BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042553
(1131 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224130996|ref|XP_002320976.1| predicted protein [Populus trichocarpa]
gi|222861749|gb|EEE99291.1| predicted protein [Populus trichocarpa]
Length = 1130
Score = 1097 bits (2838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/1161 (53%), Positives = 790/1161 (68%), Gaps = 93/1161 (8%)
Query: 3 ALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLAR 62
+ VLLLP ++P+WY M KH+++ + +++ + S + S+IE+IA LHPI+SSA NLA+
Sbjct: 19 VIGVLLLPCVVVPWWYNMIKHMKKHMDFNAHVVQSGLLSEIENIAKYLHPINSSAINLAK 78
Query: 63 VISSSLNNGTELSFSEIETK-----------------ISYIGLDGLFISYYVDGNQTLAL 105
V+SSS+N G++LS ++E K ISYIGL GLF SYY +GNQT A+
Sbjct: 79 VMSSSIN-GSKLSSYDVENKVAPSLFQAFSIIPFISQISYIGLGGLFFSYYYEGNQTFAM 137
Query: 106 YSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTD 165
YSNS+ S N ++WY+QPVD DTG++YG+A+ + P + ++W +ALNS+
Sbjct: 138 YSNSTASNERN--------FSWYRQPVDSDTGRVYGDAVKSLPFIKTNASWIEQALNSSQ 189
Query: 166 GLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDG 225
G S +GW+ A+D LFLNT + G +GA+SLGF K +T+ + LYGG L +AT G
Sbjct: 190 GYASFESGWNDAQDPLFLNTVSLRG-QGALSLGFSAKALTSFLNNVELYGGSLYLATQSG 248
Query: 226 KVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLS-----IGKIH 280
KVLV G+PNT+ I +S+S + TK Q++ V NVSC NG L +G+
Sbjct: 249 KVLVGGLPNTQTVIKENSVSLYM---TKLNGDQIDHVGNVSCMPNNGKLEDSVLYLGEAK 305
Query: 281 YKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSA 340
Y+ +CS+ E+ GV+SVYALA P GL S V+R+ K +LIL I+M + IS+++F+
Sbjct: 306 YRVFCSRVEIVGVQSVYALAFPYNGLASSVNRSIKISLILFIIMIAAIFISIVSFILLVV 365
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R+AR+EMHLC++LIKQMEATQQAERKSMNKSLAFA ASHDIRAALAGITGLIE+CY E
Sbjct: 366 RSARREMHLCSTLIKQMEATQQAERKSMNKSLAFATASHDIRAALAGITGLIEICYAEVR 425
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
GSEL+TNLRQM+ C DL+GLLNSILDTSK+EAGKMQL EE+FD+ +LLED VDL+HPV
Sbjct: 426 AGSELDTNLRQMDGCTKDLVGLLNSILDTSKIEAGKMQLEEEEFDLAKLLEDAVDLYHPV 485
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
M+KGV+VVLDP DGS+LK S+VKGDR KLKQ+L NLLSNAVKFT EGH+SVRA +KPS
Sbjct: 486 GMKKGVDVVLDPYDGSILKHSRVKGDRGKLKQVLCNLLSNAVKFTFEGHVSVRAWTQKPS 545
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
+ N ++S+++G + SCLF KNKK NA + +++MEF FEV+DTGKGIPK
Sbjct: 546 -LENKIMASNQNGLWRCFSCLFSKNKKE------FNAMKPKQSSMEFVFEVNDTGKGIPK 598
Query: 581 EKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
EK+K+VFEN+VQVKE G+GGTGLGLGIVQSLVRLMGG+I IV+KENGE+GTCF+FNVF
Sbjct: 599 EKQKSVFENFVQVKETALGQGGTGLGLGIVQSLVRLMGGEIGIVNKENGEKGTCFKFNVF 658
Query: 638 LAIREASANDN-NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSP 696
L I E S+ DN N + E E GDS G + LT++ PSP L IRT SPRL+IL
Sbjct: 659 LDICEISSTDNKNAEVEIE---GDSMPGGEH-NYSELTIRTPSPGLVIRTPSPRLSILGS 714
Query: 697 GSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPH 756
+ EGSHVVLLI NEER R +QK++E LGI VS+V WE LHSTLKR+K++ SPH
Sbjct: 715 SPKIEGSHVVLLIQNEERLRSSQKYIEGLGIKVSSVKEWEHLHSTLKRIKARQNV--SPH 772
Query: 757 SSLGKSDLSSRSDS-ESASFKEVPLSAMEGTEHKLQGY---KRRGAPSFILLVIDATAGP 812
SS GKSDL SRSD S S K+VPLS+M+G + K RGAP F+LLVIDA AGP
Sbjct: 773 SSSGKSDLGSRSDHFNSRSMKDVPLSSMDGIDQKPSASGSSNLRGAPGFVLLVIDAGAGP 832
Query: 813 FLELFNIVAEFRRDLQCNC-KVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLY 871
F EL +VAEF+RDL +C KVVWLDKPTSRSIN E + +DP DD+LLKPFHGSRLY
Sbjct: 833 FQELCRVVAEFKRDLHSSCCKVVWLDKPTSRSINLRSFEQDLIDPRDDILLKPFHGSRLY 892
Query: 872 KVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSR 931
+VI+LLPEFGG H SR + + + + +++ GSSSS HS+
Sbjct: 893 QVIRLLPEFGG-----HELISR-------------SKRENAIQATNALKDPGSSSSTHSQ 934
Query: 932 RDIMPNASVL---LKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGS-SRYKQTEIEEEDG 987
+ + S + +S EG ++ + LL + S S SR+K
Sbjct: 935 KTKLKVPSTCENSFQQVDSQAEGSSKNEKNRKNPLLDDPDHSHVRSKSRHKG-------- 986
Query: 988 ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
K L G K LVADD+ + RRV L+ GATVE CENGE A QLVR GL++QR+
Sbjct: 987 ------KSLSGLKFLVADDNEISRRVTRHILKGHGATVEVCENGEEAFQLVRIGLHNQRE 1040
Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE 1107
+LPYDYILMDCEMP M+G EATR+IR+EEK VHIPI+A +A SG E K E
Sbjct: 1041 HSHSIVLPYDYILMDCEMPKMDGCEATRQIRKEEKFYGVHIPILAFSADNSGGEGKKMEE 1100
Query: 1108 AGMDVHLGKPLNRDHLMEAIK 1128
AG D + K +N + L E I+
Sbjct: 1101 AGTDGRVNKKINMEQLEETIR 1121
>gi|224102477|ref|XP_002312692.1| predicted protein [Populus trichocarpa]
gi|222852512|gb|EEE90059.1| predicted protein [Populus trichocarpa]
Length = 1136
Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/1149 (51%), Positives = 778/1149 (67%), Gaps = 89/1149 (7%)
Query: 16 YWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLARVISSSLNNGTELS 75
+WY M K +++ + +++ + S + S+IE+IA LLHPI+SSA NLARV+SSS+N G+ LS
Sbjct: 32 WWYNMIKQMQKHMDFNAHVVQSGLVSEIENIAKLLHPINSSAINLARVMSSSIN-GSILS 90
Query: 76 FSEIETK-----------------ISYIGLDGLFISYYVDGNQTLALYSNSSFSPNPNGF 118
++E K IS+IGL GLF SYY +GNQ A+YSNS+ S N
Sbjct: 91 SYDVENKVAPSLFQAFPVIPFISQISFIGLGGLFFSYYYEGNQVFAMYSNSTASNARN-- 148
Query: 119 PIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGWSKAR 178
++WY+QPVD DTGK+YG+A+ T P + ++W +ALNS+ G S +GW+ A+
Sbjct: 149 ------FSWYRQPVDSDTGKVYGDAVKTLPFITTNASWIEQALNSSQGYASFESGWNGAQ 202
Query: 179 DALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGIPNTRMT 238
D LFLNT ++G + +SLGF K +T+ F + LYGG L +AT GKVLV G+PNT++
Sbjct: 203 DPLFLNTVSLHG-QAVLSLGFSAKALTSFFNNVELYGGSLYLATQSGKVLVGGLPNTQIV 261
Query: 239 IVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIH-----YKAYCSQFEVAGV 293
I +S+S + TK Q++ V NVSC NG L ++ Y+ CSQ E+ GV
Sbjct: 262 IKENSVSLYM---TKLNGDQIDHVGNVSCMPNNGKLQDSVLYLEEAKYRVLCSQVEIVGV 318
Query: 294 KSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASL 353
+SVYALA P GL S V+R+ + +L+L I+M + IS+++F+ RAA +E+HLC++L
Sbjct: 319 QSVYALAFPYNGLASSVNRSIEISLVLFIIMIAAIFISIVSFILLVVRAAGREIHLCSAL 378
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
IKQMEATQQAERKSMNKSLAFA+ASHDIRAALAGITGLIE+CY EA GSEL+TNL+QM+
Sbjct: 379 IKQMEATQQAERKSMNKSLAFASASHDIRAALAGITGLIEICYAEARAGSELDTNLQQMD 438
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
C DL+GLLNSILDTSK+EAGKMQL EE+FD+ +LLED VDL+HPV M+KGV+VVLDP
Sbjct: 439 DCTKDLVGLLNSILDTSKIEAGKMQLEEEEFDLAKLLEDAVDLYHPVGMKKGVDVVLDPY 498
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
DGS+LK S+VKGDRVKLKQ+L NLLSNAVKFT EGH+SVRA +KPS + N ++S+++G
Sbjct: 499 DGSILKHSRVKGDRVKLKQVLCNLLSNAVKFTFEGHVSVRAWTQKPS-LENKIIASNQNG 557
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+ CLF+KNKK + ++ ++++EF FEV+DTGKGIP+EK+K+VFEN+VQV
Sbjct: 558 LWRCFLCLFFKNKK------EFDEVKQKQSSIEFVFEVNDTGKGIPREKQKSVFENFVQV 611
Query: 594 KE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE-ASANDNN 649
KE G+GGTGLGLGIVQSLVRLMGG+I IV+KENG++GTCF+FNVFL I E SA N
Sbjct: 612 KETALGQGGTGLGLGIVQSLVRLMGGEIGIVNKENGKKGTCFKFNVFLDICEIPSAYIKN 671
Query: 650 TQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLI 709
+ E E GDS D +L + L ++ PSP L IRT SPRL+IL + EGSHVVLLI
Sbjct: 672 AEVEIE---GDSMP-DGELNYSVLPIQTPSPGLVIRTPSPRLSILGSSPKIEGSHVVLLI 727
Query: 710 ANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSD 769
NEER R + K++E LGI S+V +W+ LHSTLKR+K + SP+ S GKSDL SRSD
Sbjct: 728 QNEERLRSSHKYIEGLGIKASSVKQWKHLHSTLKRIKVRQNV--SPYGSSGKSDLGSRSD 785
Query: 770 S-ESASFKEVPLSAMEGTEHKLQGYKR---RGAPSFILLVIDATAGPFLELFNIVAEFRR 825
S S K+VPL++M+G + K + RGA F+LLVIDA AGPF EL +VAEF+R
Sbjct: 786 HFNSRSMKDVPLNSMDGIDQKPSASRSSNLRGASGFVLLVIDAGAGPFQELCRVVAEFKR 845
Query: 826 DLQCNC-KVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQ 884
DL +C KVVWLDKPTSRSIN G E + ++P DD+LLKPFHGSRLY+VI+LLPEFG
Sbjct: 846 DLPSSCYKVVWLDKPTSRSINLRGFEHDLINPRDDILLKPFHGSRLYQVIRLLPEFGATN 905
Query: 885 SKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQE-----EGSSSSEHSRRDIMPNAS 939
A +D GSSS S H T + Q+ EGSS +E +R++
Sbjct: 906 ------ALKDPGSSS-STHSQGTKLKVPSTCENSFQQVDSQAEGSSKNEKNRKN------ 952
Query: 940 VLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGK 999
P D ++ V K+ S E + +EI+E G S+ K L G
Sbjct: 953 ------------PLLDDPDHSHVKSKSRQSPTE-RLPVRSSEIQEARGNPSK-DKSLSGL 998
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+LV DD+ + R+V L+ GATVE ENGE A QLVR GL++QR+ +LPYDYI
Sbjct: 999 KLLVVDDNEISRKVTRHILKGHGATVEVFENGEEAFQLVRIGLHNQREHSHSIVLPYDYI 1058
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMDCEMP M+G EATR+IR+EEK VHIPI+A +A SG + K EAG D + K +N
Sbjct: 1059 LMDCEMPKMDGCEATRQIRKEEKFYGVHIPILAFSADNSGGQGKKMKEAGTDGRVNKKIN 1118
Query: 1120 RDHLMEAIK 1128
+ L E I+
Sbjct: 1119 MEQLEETIR 1127
>gi|224104183|ref|XP_002333975.1| predicted protein [Populus trichocarpa]
gi|222839404|gb|EEE77741.1| predicted protein [Populus trichocarpa]
Length = 1119
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/1162 (51%), Positives = 775/1162 (66%), Gaps = 106/1162 (9%)
Query: 3 ALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLAR 62
A+ V+LLP ++ +WY M K +++ + +++ + S + S+IE+IA LLHPI+SSA NLAR
Sbjct: 19 AIGVVLLPCVVVSWWYNMIKQMKKHMDFNAHVVQSGLLSEIENIAKLLHPINSSAINLAR 78
Query: 63 VISSSLNNGTELSFSEIETK-----------------ISYIGLDGLFISYYVDGNQTLAL 105
V++SS+N G+ LS ++E K ISYIGL GLF SYY +GNQT A+
Sbjct: 79 VMTSSIN-GSILSSYDVENKVAPSLFQAFSVIPFISQISYIGLGGLFFSYYYEGNQTFAM 137
Query: 106 YSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTD 165
YSNS+ S N ++WY+QPVD DTG +YG+A+ + P + ++W +ALNS+
Sbjct: 138 YSNSTASNERN--------FSWYRQPVDSDTGTVYGDAVKSLPFIKTNASWIEQALNSSQ 189
Query: 166 GLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDG 225
G S +GW+ A+D LFLNT + +G +SLGF K +T+ + LYGG L +AT G
Sbjct: 190 GYASFESGWNDAQDPLFLNTVSL-LRQGVLSLGFSAKALTSFLNNVELYGGSLYLATQSG 248
Query: 226 KVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNG-----TLSIGKIH 280
KVLV G+PNT+ I +S+S + TK Q++ V NVSC NG L +G+
Sbjct: 249 KVLVGGLPNTQTVIKENSVSLYM---TKLNGDQIDHVGNVSCMPNNGKQEDSVLYLGEAK 305
Query: 281 YKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSA 340
Y+ CSQ E+ GV+SVYAL P GL S V+R+ K +LIL I++ + IS+++FV
Sbjct: 306 YRVSCSQVEIVGVQSVYALVFPYNGLASSVNRSIKISLILFIILIAAIFISIVSFVLLVV 365
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
RAAR+E+HLC++LIKQMEATQQAERKSMNKSLAFA ASHDIRAALAGITGLIE+CY E
Sbjct: 366 RAARREIHLCSALIKQMEATQQAERKSMNKSLAFATASHDIRAALAGITGLIEICYAEVR 425
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
GSEL+TNLRQM+ C DL+GLLNSILDTSK+EAGKMQL EE+FD+ +LLED VDL+HPV
Sbjct: 426 AGSELDTNLRQMDGCTKDLVGLLNSILDTSKIEAGKMQLEEEEFDLAKLLEDAVDLYHPV 485
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
M+KGV+VVLDP DGS+LK S+VKGDR KLKQ+L NLLSNAVKFT EG +SVRA +KPS
Sbjct: 486 GMKKGVDVVLDPYDGSILKHSRVKGDRGKLKQVLCNLLSNAVKFTFEGQVSVRAWTQKPS 545
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
+ N ++S+++G + SCLF+KNKK D+ ++ +++MEF FEV+DTGKGIPK
Sbjct: 546 -LENKIIASNQNGLWRCFSCLFFKNKKEFNDV------KQKQSSMEFVFEVNDTGKGIPK 598
Query: 581 EKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
EK+K+VFEN+VQVKE G+GGTGLGLGIVQSLVRLMGG+I IV+KENGE+GTCF+FNVF
Sbjct: 599 EKQKSVFENFVQVKETALGQGGTGLGLGIVQSLVRLMGGEIGIVNKENGEKGTCFKFNVF 658
Query: 638 LAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPG 697
L I E + DN E E+ G G +L + LT++ PSP L IRT SPRL+ILS
Sbjct: 659 LDICEIPSTDNKN-AEVEIEGDSMPNG--ELNYSELTIRTPSPGLVIRTPSPRLSILSSS 715
Query: 698 SRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHS 757
+ EGSHVVLLI NEER R +QK++E LGI VS+V +WE LHSTLKR+K++ SPHS
Sbjct: 716 PKIEGSHVVLLIQNEERLRSSQKYIEGLGIKVSSVKQWEHLHSTLKRIKARQNV--SPHS 773
Query: 758 SLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKR---RGAPSFILLVIDATAGPFL 814
S GKSD S S K+VPLS+M+G + KL + RGAP F+LLVIDA AGPF
Sbjct: 774 SSGKSD-----HFNSRSMKDVPLSSMDGIDQKLSASRNSNLRGAPGFVLLVIDAGAGPFQ 828
Query: 815 ELFNIVAEFRRDLQCN-CKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKV 873
EL +VAEF+RDL + CKVVWLDK TSRS+N G E + +DP DD+LLKPFHGSRLY+V
Sbjct: 829 ELCRVVAEFKRDLHSSCCKVVWLDKQTSRSMNLRGFEQDLIDPRDDILLKPFHGSRLYQV 888
Query: 874 IKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQE-----EGSSSSE 928
I+LLPEFG +D GSSS S H +T + Q+ EGSS +E
Sbjct: 889 IRLLPEFGATN------VLKDPGSSS-STHSQKTKLKVPSTCENSFQQVDSQAEGSSKNE 941
Query: 929 HSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGE 988
+R++ LL + S + P +L+++ +EI+E G
Sbjct: 942 KNRKN------PLLDDPDHSHVRSKSRQSPIERLLVRS-------------SEIQEVCGN 982
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
S+ K L G K LVADD+ + RRV L+ GATVE CENGE + QLVR
Sbjct: 983 LSKG-KSLSGLKFLVADDNEISRRVTRHILKGHGATVEVCENGEESFQLVR--------- 1032
Query: 1049 GAPHILPYDYILMDC--EMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI 1106
I+ +++L+ C +MP M+G EATR+IR++EK VHIPI+A +A SG E K
Sbjct: 1033 ----IVYGNHVLISCIQQMPKMDGCEATRQIRKKEKFYGVHIPILAFSADNSGGEGKKMK 1088
Query: 1107 EAGMDVHLGKPLNRDHLMEAIK 1128
EAG D + K +N + L E I+
Sbjct: 1089 EAGTDGRVNKKINTEQLEETIR 1110
>gi|255548469|ref|XP_002515291.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223545771|gb|EEF47275.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 1138
Score = 1028 bits (2658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/1169 (51%), Positives = 773/1169 (66%), Gaps = 113/1169 (9%)
Query: 10 PASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLARVISSSLN 69
P+ +IP+WYK+ + +++ V + ++ S MQS+IE+ A LLHP++SSATNLAR++SSSLN
Sbjct: 26 PSVVIPWWYKIIQQMKDQVDMDASMSSSGMQSEIENTAKLLHPLNSSATNLARILSSSLN 85
Query: 70 NGTELSFSEIETK-----------------ISYIGLDGLFISYYVDGNQTLALYSNSSFS 112
G+ LS I+ K ISY GL+G F +YY DGN+T A+YSNSS +
Sbjct: 86 -GSTLSQLAIQNKVAPMLFQTFSVIPHISQISYFGLEGPFFAYYRDGNETYAIYSNSSIA 144
Query: 113 PNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGT 172
P+ + + K TWYKQ D DTGKLYG A ++ + ++ ++W +AL+S +G S+G
Sbjct: 145 PSNSSALSLQIKCTWYKQAADPDTGKLYGNASESQANILANASWIQEALSSGNGHASIGN 204
Query: 173 GWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGI 232
GWS A+D +FLN+ I G +GA+SLGFPV + N F I YGG L +AT G VL G+
Sbjct: 205 GWSSAQDIIFLNSVSILG-QGAISLGFPVNAVINFFNAIEFYGGSLCLATVKGDVLSNGL 263
Query: 233 PNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTL-----SIGKIHYKAYCSQ 287
PNT++ I SISF L+ + ++ + VSC G L IG+ Y AYCSQ
Sbjct: 264 PNTQLVITGKSISFNLMN---SDGDHIDHIGKVSCMPNKGMLRPSLLKIGEAKYMAYCSQ 320
Query: 288 FEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEM 347
E+ GV+SVYALA P G+VS V R++K ALILL+VM V V IS+ +FV RAA +E+
Sbjct: 321 LEIMGVQSVYALAFPHHGVVSTVDRSTKVALILLLVMVVAVFISIFSFVVLMVRAATREI 380
Query: 348 HLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET 407
HL ++LI+QMEATQQAERKSMNKSLAFA+ASHDIRAALAGITGLIE+ Y E P EL+T
Sbjct: 381 HLSSALIRQMEATQQAERKSMNKSLAFASASHDIRAALAGITGLIEISYGEVSP-YELQT 439
Query: 408 NLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE 467
NL QM+ CA DL+GLLNSILD SKVEAGKMQ+ E+FD+ LLEDVVDLFHPV M+KG++
Sbjct: 440 NLHQMDDCAKDLVGLLNSILDMSKVEAGKMQVELEEFDLANLLEDVVDLFHPVGMQKGLD 499
Query: 468 VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
V+LDP DGSVLKFS VKGDR KLKQ+L NLL NAVKFTSEGH+SVRA +KPS + + +
Sbjct: 500 VILDPCDGSVLKFSNVKGDRGKLKQVLCNLLGNAVKFTSEGHVSVRAWARKPS-LEDKII 558
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
+SS+ G + SC F ++K D E +++ +++ N MEF FEVDDTG GIPKE +K+VF
Sbjct: 559 ASSQKGLWRHCSCWFMEHKDH--DAETMDSMKQNPNCMEFLFEVDDTGIGIPKEMQKSVF 616
Query: 588 ENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
EN+VQ KE G+GGTGLGLGIVQSLVRLMGG+I IVDKEN E+GTCF+FN FL E
Sbjct: 617 ENFVQAKETAFGQGGTGLGLGIVQSLVRLMGGEIGIVDKENNEKGTCFKFNTFLITSEIP 676
Query: 645 ANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSH 704
+ + T+G+ E+ G DS + Q+ LTVKAP+ S + SPRL+IL + +GSH
Sbjct: 677 ST-SYTRGDIEM-GRDSISNKAH-QYSELTVKAPT-SFTSFAASPRLSILGSSLKIDGSH 732
Query: 705 VVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDL 764
VVLLI N++R+RI QKF+E LGI +S VS+WERL STL +++SK SP+S GKSDL
Sbjct: 733 VVLLIQNKQRQRIVQKFIERLGIRISVVSKWERLSSTLTKIRSKQNV--SPYSYSGKSDL 790
Query: 765 SSRSD-SESASFKEVPLSAMEGTEHKLQGYKR-----RGAPSFILLVIDATAGPFLELFN 818
SR++ S S K+VPLS ++G E K ++ +GAPSFILLVID + GPF +L
Sbjct: 791 GSRNEISSSRPKKDVPLSYLDGAEQKPLSHRSSSSILKGAPSFILLVIDTSTGPFEKLQQ 850
Query: 819 IVAEFRRDLQ-CNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLL 877
+ EFRR L CKVVWLDKPT R I+ G+ED+ +D +D++ LKPFHGSRLY VI+ L
Sbjct: 851 AITEFRRGLHSARCKVVWLDKPTLRRIH-GGIEDDIIDSDDEISLKPFHGSRLYHVIRFL 909
Query: 878 PEFGGV-------------QSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQE--- 921
PEFGG + R KA +D GSSS K R +H +QE
Sbjct: 910 PEFGGTLHHGVSSSKPKRESTIRARKAIKDPGSSSAIKLQRR---------QHSLQEGHM 960
Query: 922 --EGSSSSEHSRRDIMPNASVLLKTGNSSGEGP-RRDIMPNASVLLKTGNSSGEGSSRYK 978
EGS+ EH + ++G+ P R+D + GSS
Sbjct: 961 VVEGSTIREHHK---------------TTGQYPARKDSI---------------GSS--- 987
Query: 979 QTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV 1038
EI + + + KPL G + LVADD R VA+ NL LGA+V+ C NGE AL+LV
Sbjct: 988 --EIHDRECGNQSSDKPLSGVRFLVADDDQASRMVAKGNLSKLGASVKLCANGEEALELV 1045
Query: 1039 RSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHIS 1098
R GL +Q + PYDYILMDCEMPIMNGYEATR+IR EE+ +H+P+IALTA
Sbjct: 1046 RYGLQNQNKNRRYSVAPYDYILMDCEMPIMNGYEATRQIRLEERSYDIHMPVIALTA--D 1103
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ +K EAGMD HL KPLNRD L++AI
Sbjct: 1104 DDNGEKMEEAGMDDHLHKPLNRDQLLKAI 1132
>gi|225437547|ref|XP_002270319.1| PREDICTED: histidine kinase CKI1-like [Vitis vinifera]
Length = 1110
Score = 1010 bits (2611), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/1158 (51%), Positives = 773/1158 (66%), Gaps = 115/1158 (9%)
Query: 10 PASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLARVISSSLN 69
P+ +IP WY K IE D LSS +LH+ + S+I+S A L+HP+++SA NLARV+++S++
Sbjct: 26 PSVVIPLWYDTIKKIEHDAKLSSQKLHTELLSEIKSTAELVHPMNASAMNLARVLNASVS 85
Query: 70 NGTELSFSEIE-----------------TKISYIGLDGLFISYYVDGNQTLALYSNSSFS 112
G +L FSEI+ ++ISYIG+DGL SYY G++ ALYSNSS S
Sbjct: 86 -GMKLPFSEIKNRVAPMLFQALSITPHVSQISYIGIDGLLFSYYAHGSEIFALYSNSSIS 144
Query: 113 PNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGT 172
N + YTWY Q D DTGKLYG+ I + P V ++WF +A+NST+G SLGT
Sbjct: 145 VNSSS--PNATAYTWYIQRADSDTGKLYGKVITSPPLVVVNASWFEEAMNSTNGYSSLGT 202
Query: 173 GWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGI 232
W+ +D LFLNTA ++G RGAVSLGFPVK +T+ + I+L+ G L +AT D KVL++G+
Sbjct: 203 EWNSVQD-LFLNTAKVDG-RGAVSLGFPVKEVTDFLSVIDLHDGSLCLATEDNKVLIEGL 260
Query: 233 PNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGT-----LSIGKIHYKAYCSQ 287
PNT++ + NDSISF+++ N Q++ V NVSC + + T L+I Y YCSQ
Sbjct: 261 PNTQIMVSNDSISFKVVENQD--GDQISHVGNVSCKADDRTPKASVLNISNKDYVVYCSQ 318
Query: 288 FEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEM 347
E+ GVKSVYALA P +GL S VH++S+ ALIL IVM V ++I + F+F AAR+EM
Sbjct: 319 LEIMGVKSVYALAFPYRGLESRVHKSSRSALILHIVMVVIMVILVSMFMFLLVGAARREM 378
Query: 348 HLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET 407
+L A LIKQM+ATQQAERKSMNKSLAFA+ASHD+RA+LAG+TGLI++ E PGSE+ET
Sbjct: 379 YLRAKLIKQMDATQQAERKSMNKSLAFASASHDVRASLAGLTGLIDISKDEVAPGSEIET 438
Query: 408 NLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE 467
NL QM C DLLG+LNSILDTSK+EAGKMQL EE+F++ ELLEDVVDL+HPV M+KGV+
Sbjct: 439 NLIQMEGCTKDLLGILNSILDTSKIEAGKMQLEEEEFNLEELLEDVVDLYHPVGMKKGVD 498
Query: 468 VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
VVLDP DGSV KFS+VKGDR+KLKQ+L NLLSNAVKFTSEGH+S+RA KKPS+ +
Sbjct: 499 VVLDPHDGSVAKFSRVKGDRMKLKQVLCNLLSNAVKFTSEGHVSIRAWAKKPSSESSVLA 558
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
SS + L + F KN +A DLEA N Q++ N MEF FEVDDTGKG+PKEK+K+VF
Sbjct: 559 SSQK-SMLNRLWSFFCKNNEAFKDLEASNKVQKNPNCMEFVFEVDDTGKGVPKEKQKSVF 617
Query: 588 ENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
ENYVQVKE G GGTGLGLGIVQSLVRLMGGDI IVDKE G +GTCFRFN+FL +
Sbjct: 618 ENYVQVKETALGTGGTGLGLGIVQSLVRLMGGDIGIVDKEIGAKGTCFRFNIFLTTCDTV 677
Query: 645 ANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILS---PGSRHE 701
+D+ + + E G A Q ++L +++ T +P LNIL+ P R E
Sbjct: 678 PSDHGKEEDIEAQG--HATSSYSYQPLDLRIQS--------TCNPGLNILTSPRPSPRAE 727
Query: 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGK 761
GSHV++L+ ++ERRRI Q+ E LGI VS + WER LK+++ K H SS G
Sbjct: 728 GSHVIILMQSDERRRITQRLFETLGIKVSVLKEWERFLYALKKIRRKVSLSH--RSSSGI 785
Query: 762 SDLS-----SRSDSESASFKEVPLSAMEGTEHKLQGYKR---RGAPSFILLVIDATAGPF 813
S+ S S S S +A K++PLSAM+GT+ L ++ RG P FIL++I+ATAGPF
Sbjct: 786 SEFSPRSFRSGSFSSNAGPKDMPLSAMDGTDLTLPTPRKTYARGTPRFILILIEATAGPF 845
Query: 814 LELFNIVAEFRRDLQ--CNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLY 871
EL VAEFR+DLQ C C+ VWLDKPT RS+NF + +E + PND V+LKPFHGSRLY
Sbjct: 846 PELCRAVAEFRKDLQNTC-CRAVWLDKPTLRSVNFRDVPEEMISPNDLVMLKPFHGSRLY 904
Query: 872 KVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSR 931
+V KLLPEFGG G I + G + E
Sbjct: 905 QVAKLLPEFGG-----------------------------PMLGISAISQVGKAGPE--- 932
Query: 932 RDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQ 991
P+ S L T ++ PR+ + V L K+ EI+E S
Sbjct: 933 ----PSLSSLPTTNRTT---PRKS---RSRVRL------------VKEPEIQEVG--TSS 968
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
Q PLRGK++L+A+DSM+L ++A ++ LG TVEAC+NG A++LV +GL + A
Sbjct: 969 NQNPLRGKRVLIAEDSMVLCKLATAHVTRLGGTVEACDNGAKAVELVCNGLRNNTKNNAS 1028
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
ILPYDYILMDCEMP M+GYEAT++IREEE++ VHIPIIALTAH +GEEA +TIEAGMD
Sbjct: 1029 IILPYDYILMDCEMPEMDGYEATKRIREEEQQYGVHIPIIALTAHANGEEAKRTIEAGMD 1088
Query: 1112 VHLGKPLNRDHLMEAIKY 1129
HL KPL R+ LM AI+Y
Sbjct: 1089 YHLSKPLKRETLMGAIEY 1106
>gi|356503926|ref|XP_003520750.1| PREDICTED: histidine kinase CKI1-like [Glycine max]
Length = 1056
Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/1140 (48%), Positives = 713/1140 (62%), Gaps = 115/1140 (10%)
Query: 20 MTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLARVISSSLNNGTELSFSEI 79
M HIE V L+S + S QS+IE A L+HPI+SS+TN A+++SS+L + T LSFS+I
Sbjct: 1 MVMHIEHHVILNSEYVLSQFQSEIEHSAGLIHPINSSSTNFAKLLSSTLQD-TNLSFSDI 59
Query: 80 ETK-----------------ISYIGLDGLFISYYVDGNQTLALYSNSSFSPNPNGFPIAK 122
+TK ISYI GLF SYY D Q LA+YSNSS F A
Sbjct: 60 KTKVAPLLFKAFETVPNLAQISYIEKKGLFFSYYTDYGQVLAMYSNSSSLSTS--FGGAS 117
Query: 123 GKYTWYKQPVDRDTGKLYGEAIVTK-PSSVSTSTWFLKALNSTDGLGSLGTGWSKARDAL 181
+Y QPV+RDTG+LYG+AI+++ PS++ ++WF+KA+NS+ SLGT W+ D L
Sbjct: 118 NLSIYYIQPVNRDTGELYGKAIISEVPSNIINTSWFVKAVNSSLSYASLGTKWNNDHDLL 177
Query: 182 FLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGIPNTRMTIVN 241
F++++ I GT+ +SLG PV IT+ F + G LS+ T DGK+LV+GI NTR+ N
Sbjct: 178 FVSSSRIKGTQ-VISLGIPVTTITDFFTPV---GANLSLVTKDGKMLVEGIQNTRLGFSN 233
Query: 242 DSISFQLITNTKTRAQQMNPVKNVSCTSGNG----TLSIGKIHYKAYCSQFEVAGVKSVY 297
D + FQ + Q + VSC G+ L+I + Y CS ++ +KSVY
Sbjct: 234 DMVYFQ---SVNANGDQTSYDGVVSCKDGDAEAASILNIQGVEYLIRCSTIDIMEIKSVY 290
Query: 298 ALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQM 357
LA+PRKGL V K+ L LL M V +LI+M++F++ + R+ R+EMHLC SLIKQ
Sbjct: 291 VLAVPRKGLDHFVLDIKKKGLALLTTMIVMILIAMVSFLYINVRSLRREMHLCWSLIKQN 350
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EATQQAERK MNKSLAFA+ASHD+RA+LAG+TGLIE+ + E P SEL TNLRQM+ C
Sbjct: 351 EATQQAERKCMNKSLAFASASHDVRASLAGLTGLIEMSFHEVSPDSELGTNLRQMDSCTK 410
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
DLLGLLNSILD SKVEAGKM L EE+FDV +LLEDVVDL+H VAM+KGV++VLDP +GSV
Sbjct: 411 DLLGLLNSILDASKVEAGKMLLEEEEFDVFQLLEDVVDLYHSVAMKKGVDIVLDPCNGSV 470
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L++S+ KGDR KLKQ+L NLLSNAVKFT EGHI+VRA +KPS + + +++ ++G +
Sbjct: 471 LRYSRTKGDRGKLKQVLCNLLSNAVKFTEEGHIAVRAWAQKPS-LQSSMIATHQYGSSRL 529
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE-- 595
+S L + +AR D+E +N Q+D N M+FT EVDDTGKGIPKEK K+VFENYVQVKE
Sbjct: 530 LSRLCCRQNEARDDVEDLN-IQQDPNCMDFTIEVDDTGKGIPKEKHKSVFENYVQVKETT 588
Query: 596 -GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
G+ GTGLGLGIVQSLVRLM GDIEI+DK+ GE+GTCFRFNV L E ND+
Sbjct: 589 LGQEGTGLGLGIVQSLVRLMHGDIEIMDKDIGEKGTCFRFNVLLTAHETQMNDDTRD--- 645
Query: 655 ELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEER 714
D A + Q LT+ SP LSI T SP R E S VVLLI NEER
Sbjct: 646 -----DQAGSGNKNQSHGLTM---SPKLSIWTRSP---------RSEASRVVLLIQNEER 688
Query: 715 RRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESAS 774
R Q+FME LGI V V W +LH TLK++ + G H + S SS S S S+
Sbjct: 689 RGTTQRFMERLGIKVKVVKEWRQLHYTLKKIIKQKG----LHPNSSSSPESSDSPSASSC 744
Query: 775 FKEVPLSAMEGTEHKLQGYKR---RGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNC 831
VPLSA +GT + +KR + F+L+VIDA AGPF EL +VAEF+R L C
Sbjct: 745 TNGVPLSAQDGTNYISSIFKRTDIEASSGFVLIVIDANAGPFSELCKVVAEFKRGLCYPC 804
Query: 832 KVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKA 891
+VVWL+ P S++ L + + ND VL KP HG RL++VI++LPE+GGV +
Sbjct: 805 RVVWLENPLIPSVDNKILNKDVSNSNDIVLSKPLHGHRLFQVIRILPEYGGVWPCSSSET 864
Query: 892 SRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEG 951
++ G S + G R R E+QE GSS
Sbjct: 865 KKEKGQVSLTDE----GAIR----RVELQECGSS-------------------------- 890
Query: 952 PRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLR 1011
SV ++ + S S Q EI+E E +KPL G K LV +D ++LR
Sbjct: 891 ---------SVTQQSYDRSRARKSHIHQGEIQE--CEELSNEKPLWGMKCLVVEDVVLLR 939
Query: 1012 RVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGY 1071
R+ + L LGA+V CENGE A+Q V GL P D+ILMDC+MP+M+GY
Sbjct: 940 RITKSTLDRLGASVMECENGEQAVQTVEEGLTRNSSNR-----PCDFILMDCQMPVMDGY 994
Query: 1072 EATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH 1131
EATR+IRE EK + VHIPI ALTA+ +G+EA +IEAGMD HL KP+N++ L++AIK ++
Sbjct: 995 EATRRIREIEKSHGVHIPIFALTAN-TGKEAILSIEAGMDDHLIKPINKEALLKAIKRIY 1053
>gi|449454135|ref|XP_004144811.1| PREDICTED: histidine kinase CKI1-like [Cucumis sativus]
Length = 1038
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/1082 (47%), Positives = 695/1082 (64%), Gaps = 84/1082 (7%)
Query: 88 LDGLFISYYVDGNQTLALYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTK 147
+DGLF SYY D NQT A+Y+NS+F+ +P + +Y+W Q + TG+LYG
Sbjct: 1 MDGLFFSYYTDKNQTFAVYANSTFTAK--FYPHPRREYSWLTQLANSTTGELYGNMTEIL 58
Query: 148 PSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNL 207
P S ++WF ALNS G S+GT WS + LFLNT +NG++G VS GF K +L
Sbjct: 59 PLVTSNTSWFRDALNSNQGCASIGTKWSSNHERLFLNTVRVNGSKGVVSFGFSFKTFIDL 118
Query: 208 F-AGINLYGGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVS 266
F I GGRL +A+N+G++LV G + +M +VN S +FQ + ++ + N+S
Sbjct: 119 FFTSIERQGGRLYLASNEGEILVLGSQDIKMVLVNGSATFQFLN---PNGGEIARLGNIS 175
Query: 267 CTS-------GNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALI 319
C + + ++ +Y YC E+ GV+ VY+L +P+K L SL+ ++S+ LI
Sbjct: 176 CQARKEDFDPKDSFFNLLGTNYNIYCYPVEILGVQLVYSLVLPQKELASLIFKSSRMGLI 235
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
LLI++ +I++ FVF R ++EMHLCA LI+QMEATQQAERKSMNKS+AF ASH
Sbjct: 236 LLILIMAITIITVFIFVFIVIRGTKREMHLCAKLIQQMEATQQAERKSMNKSVAFTRASH 295
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQL 439
DIRA+LAGI GLIE+C+ E+ PGSEL+ +L+QM+ C DLLG+LNSILDTSK+EAGK+QL
Sbjct: 296 DIRASLAGIIGLIEICHNESTPGSELDISLKQMDGCTKDLLGILNSILDTSKIEAGKIQL 355
Query: 440 IEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLS 499
EE+F +G+LLEDVVDL+HPV ++KG+++VLDP DGS++KFS+VKGDR KLKQ+L NLLS
Sbjct: 356 EEEEFHLGQLLEDVVDLYHPVGVKKGIDLVLDPYDGSIIKFSQVKGDRGKLKQVLCNLLS 415
Query: 500 NAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAV-NAA 558
NAVKFTSEG ++VRA VK + N +SS+ + + N + +A+ N
Sbjct: 416 NAVKFTSEGQVTVRAWVKNLPTMQNNMISSNHNDEILKYFSFLVCNTSTFQEQQAMDNGV 475
Query: 559 QRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMG 615
+ MEFTFE+DDTGKGIPKEKRK VFENYVQVKE G+GGTGLGLGIVQSLVRLMG
Sbjct: 476 NLNPGCMEFTFEIDDTGKGIPKEKRKLVFENYVQVKETAFGQGGTGLGLGIVQSLVRLMG 535
Query: 616 GDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTV 675
GDI I+DKE GE+GTCFRF+V L + E + N G D+ + LT
Sbjct: 536 GDIAILDKEIGEKGTCFRFSVLLLVLEDNVN----------TGDDTRQPSPTSK---LTF 582
Query: 676 KAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRW 735
AP+ SL +SPR I + S+ E S V+LLI N++RR I +KF+E+LG+ V A+ +W
Sbjct: 583 WAPTTSL----HSPRA-IRTTSSKTETSRVILLIQNDQRRLICKKFLESLGVKVLAMKQW 637
Query: 736 ERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLSAM----------EG 785
E+L +TL+++ K HS H+S G+S SS SD S S + + +
Sbjct: 638 EQLLTTLQKILDK--QSHSMHNSRGRSGTSSPSDCLSKSTSGDSRNGLNMHISSGARKDE 695
Query: 786 TEHKLQGYKR---RGAPSFILLVIDATAGPFLELFNIVAEFRRDLQ-CNCKVVW-LDKPT 840
T + L +K+ RG SFIL+VIDA AGPF E+ N+VA FRR LQ +CKVVW L+
Sbjct: 696 TNYFLSVFKKTNLRGGNSFILIVIDARAGPFKEICNMVANFRRRLQGSHCKVVWLLENQM 755
Query: 841 SRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAG--SS 898
SR N G++ ND + +PFHGSRLY+VI+LLPEFGG S +G S
Sbjct: 756 SRISNDKGIDSNIYKSNDVFISRPFHGSRLYEVIRLLPEFGGTLETGESSTSYWSGNVSK 815
Query: 899 SYSKHPYRTGKSRSKAGRHEI---------QEEGSSSSEHSRRDIMPNASVLLKTGNSSG 949
S PY+ +S+SK G I Q+E +SS+ S +++ N + G+ +
Sbjct: 816 DLSSSPYQC-QSKSKEGNSPIFRGHIETRVQKETTSSNGTSPKNLSTN-QIHSCIGSKTR 873
Query: 950 EGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMM 1009
P I+ S+ EI EE + S +KPL GKK+LVA+D+++
Sbjct: 874 SSP---IVEQKSL----------------HQEIREEKYKHSSGEKPLSGKKVLVAEDNLV 914
Query: 1010 LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN 1069
L+++A +NL LGAT E CENG+ AL+LV +GL +QR GA + LPYDYILMDCEMPIM+
Sbjct: 915 LQKLARLNLERLGATTEICENGKEALELVCNGLGNQRKHGASNTLPYDYILMDCEMPIMD 974
Query: 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
GYEATR+IR+ E+ HIPIIALTAH +GEEA KTIEAGMDVHLGKPL ++ L+EAI
Sbjct: 975 GYEATREIRKVERYYNTHIPIIALTAHTTGEEAGKTIEAGMDVHLGKPLRKEKLLEAITC 1034
Query: 1130 LH 1131
+H
Sbjct: 1035 IH 1036
>gi|147861778|emb|CAN78916.1| hypothetical protein VITISV_032223 [Vitis vinifera]
Length = 1143
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/978 (53%), Positives = 667/978 (68%), Gaps = 68/978 (6%)
Query: 2 QALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLA 61
A VLLLP+ +IP WY K IE D LSS +LH+ + S+I+S A L+HP+++SA NLA
Sbjct: 51 HAFLVLLLPSVVIPLWYDTIKKIEHDAKLSSQKLHTELLSEIKSTAELVHPMNASAMNLA 110
Query: 62 RVISSSLNNGTELSFSEIE-----------------TKISYIGLDGLFISYYVDGNQTLA 104
RV+++S++ G +L FSEI+ ++ISYIG+DGL SYY G++ A
Sbjct: 111 RVLNASVS-GMKLPFSEIKNRVAPMLFQALSITPHVSQISYIGIDGLLFSYYAHGSEIFA 169
Query: 105 LYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNST 164
LYSNSS S N + YTWY Q D DTGKLYG+ I + P V ++WF +A+NST
Sbjct: 170 LYSNSSISVNXSS--PNATAYTWYIQRADSDTGKLYGKVITSPPLVVVNASWFEEAMNST 227
Query: 165 DGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATND 224
+G SLGT W+ +D LFLNTA ++G RGAVSLGFPVK +T+ + I+L+ G L +AT D
Sbjct: 228 NGYSSLGTEWNSVQD-LFLNTAKVDG-RGAVSLGFPVKEVTDFLSVIDLHDGSLCLATED 285
Query: 225 GKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGT-----LSIGKI 279
KVL++G+PNT++ + NDSISF+++ N Q++ V NVSC + + T L+I
Sbjct: 286 NKVLIEGLPNTQIMVSNDSISFKVVENQD--GDQISHVGNVSCKADDRTPKASVLNISNK 343
Query: 280 HYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKS 339
Y YCSQ E+ GVKSVYALA P +GL S VH++S+ ALIL IVM V ++I + F+F
Sbjct: 344 DYVVYCSQLEIMGVKSVYALAFPYRGLESRVHKSSRSALILHIVMVVIMVILVSMFMFLL 403
Query: 340 ARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEA 399
AAR+EM+L A LIKQM+ATQQAERKSMNKSLAFA+ASHD+RA+LAG+TGLI++ E
Sbjct: 404 VGAARREMYLRAKLIKQMDATQQAERKSMNKSLAFASASHDVRASLAGLTGLIDISKDEV 463
Query: 400 GPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHP 459
PGSE+ETNL QM C DLLG+LNSILDTSK+EAGKMQL EE+F++ ELLEDVVDL+HP
Sbjct: 464 APGSEIETNLIQMEGCTKDLLGILNSILDTSKIEAGKMQLEEEEFNLEELLEDVVDLYHP 523
Query: 460 VAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
V M+KGV+VVLDP DGSV KFS+VKGDR+KLKQ+L NLLSNAVKFTSEGH+S+RA KKP
Sbjct: 524 VGMKKGVDVVLDPHDGSVAKFSRVKGDRMKLKQVLCNLLSNAVKFTSEGHVSIRAWAKKP 583
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
S+ + SS + L + F KN +A DLEA N Q++ N MEF FEVDDTGKG+P
Sbjct: 584 SSESSVLASSQK-SMLNRLWSFFCKNNEAFKDLEASNKVQKNPNCMEFVFEVDDTGKGVP 642
Query: 580 KEKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
KEK+K+VFENYVQVKE G GGTGLGLGIVQSLVRLMGGDI IVDKE G +GTCFRFN+
Sbjct: 643 KEKQKSVFENYVQVKETALGTGGTGLGLGIVQSLVRLMGGDIGIVDKEIGAKGTCFRFNI 702
Query: 637 FLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILS- 695
FL + +D+ + + E G A Q ++L +++ T +P LNIL+
Sbjct: 703 FLTTCDTVPSDHGKEEDIEAQG--HATSSYSYQPLDLRIQS--------TCNPGLNILTS 752
Query: 696 --PGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIH 753
P R EGSHV++L+ ++ERRRI Q+ E LGI VS + WER LK+++ K H
Sbjct: 753 PRPSPRAEGSHVIILMQSDERRRITQRLFETLGIKVSVLKEWERFLYALKKIRRKVSLSH 812
Query: 754 SPHSSLGKSDLS-----SRSDSESASFKEVPLSAMEGTEHKLQGYKR---RGAPSFILLV 805
SS G S+ S S S S +A K++PLSAM+GT+ L ++ RG P FIL++
Sbjct: 813 --RSSSGISEFSPRSFRSGSFSSNAGPKDMPLSAMDGTDLTLPTPRKTYARGTPRFILIL 870
Query: 806 IDATAGPFLELFNIVAEFRRDLQ--CNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLK 863
I+ATAGPF EL VAEFR+DLQ C C+ VWLDKPT RS+NF + +E + PND V+LK
Sbjct: 871 IEATAGPFPELCRAVAEFRKDLQNTC-CRAVWLDKPTLRSVNFRDVPEEMISPNDLVMLK 929
Query: 864 PFHGSRLYKVIKLLPEFGGVQ-----SKRHGKASRDAGSSSYSKHPYRTG-KSRSK---A 914
PFHGSRLY+V KLLPEFGG + GKA + SS T KSRS
Sbjct: 930 PFHGSRLYQVAKLLPEFGGPMLGISAISQVGKAGPELSLSSLPTTNRTTPRKSRSXVRLV 989
Query: 915 GRHEIQEEGSSSSEHSRR 932
EIQE G+SS+++ R
Sbjct: 990 KESEIQEVGTSSNQNPLR 1007
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 117/152 (76%), Gaps = 2/152 (1%)
Query: 978 KQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
K++EI+E S Q PLRGK++L+A+DSM+L ++A ++ LG TVEAC+NG A++L
Sbjct: 990 KESEIQEVG--TSSNQNPLRGKRVLIAEDSMVLCKLATAHVTRLGGTVEACDNGAKAVEL 1047
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
V +GL + A ILPYDYILMDCEMP M+GYEAT++IREEE++ VHIPIIALTAH
Sbjct: 1048 VCNGLRNNXKNNASIILPYDYILMDCEMPEMDGYEATKRIREEEQQYGVHIPIIALTAHA 1107
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
+GEEA +TIEAGMD HL KPL R+ LM AI+Y
Sbjct: 1108 NGEEAKRTIEAGMDYHLSKPLKRETLMGAIEY 1139
>gi|449490917|ref|XP_004158748.1| PREDICTED: LOW QUALITY PROTEIN: histidine kinase CKI1-like [Cucumis
sativus]
Length = 1001
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/1020 (48%), Positives = 657/1020 (64%), Gaps = 82/1020 (8%)
Query: 148 PSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNL 207
P S ++WF ALNS G S+GT WS + LFLNT +NG++G VS GF K +L
Sbjct: 6 PLVTSNTSWFRDALNSNQGCASIGTKWSSNHERLFLNTVRVNGSKGVVSFGFSFKTFIDL 65
Query: 208 F-AGINLYGGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVS 266
F I GGRL +A+N+G++LV G + +M +VN S +FQ + ++ + N+S
Sbjct: 66 FFTSIERQGGRLYLASNEGEILVLGSQDIKMVLVNGSATFQFLN---PNGGEIARLGNIS 122
Query: 267 CTS-------GNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALI 319
C + + ++ +Y YC E+ GV+ VY+L +P+K L SL+ ++S+ LI
Sbjct: 123 CQARKEDFDPKDSFFNLLGTNYNIYCYPVEILGVQLVYSLVLPQKELASLIFKSSRMGLI 182
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
LLI++ +I++ FVF R ++EMHLCA LI+QMEATQQAERKSMNKS+AF ASH
Sbjct: 183 LLILIMAITIITVFIFVFIVIRGTKREMHLCAKLIQQMEATQQAERKSMNKSVAFTRASH 242
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQL 439
DIRA+LAGI GLIE+C+ E+ PGSEL+ +L+QM+ C DLLG+LNSILDTSK+EAGK+QL
Sbjct: 243 DIRASLAGIIGLIEICHNESTPGSELDISLKQMDGCTKDLLGILNSILDTSKIEAGKIQL 302
Query: 440 IEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLS 499
EE+F +G+LLEDVVDL+HPV ++KG+++VLDP DGS++KFS+VKGDR KLKQ+L NLLS
Sbjct: 303 EEEEFHLGQLLEDVVDLYHPVGVKKGIDLVLDPYDGSIIKFSQVKGDRGKLKQVLCNLLS 362
Query: 500 NAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAV-NAA 558
NAVKFTSEG ++VRA VK + N +SS+ + + N + +A+ N
Sbjct: 363 NAVKFTSEGQVTVRAWVKNLPTMQNNMISSNHNDEILKYFSFLVCNTSTFQEQQAMDNGV 422
Query: 559 QRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMG 615
+ MEFTFE+DDTGKGIPKEKRK VFENYVQVKE G+GGTGLGLGIVQSLVRLMG
Sbjct: 423 NLNPGCMEFTFEIDDTGKGIPKEKRKLVFENYVQVKETAFGQGGTGLGLGIVQSLVRLMG 482
Query: 616 GDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTV 675
GDI I+DKE GE+GTCFRF+V L + E + N G D+ + LT
Sbjct: 483 GDIAILDKEIGEKGTCFRFSVLLLVLEDNVN----------TGDDTRQPSPTSK---LTF 529
Query: 676 KAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRW 735
AP+ SL +SPR I + S+ E S V+LLI N++RR I +KF+E+LG+ V A+ +W
Sbjct: 530 WAPTTSL----HSPRA-IRTTSSKTETSRVILLIQNDQRRLICKKFLESLGVKVLAMKQW 584
Query: 736 ERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLSAM----------EG 785
E+L +TL+++ K HS H+S G+S SS SD S S + + +
Sbjct: 585 EQLLTTLQKILDK--QSHSMHNSRGRSGTSSPSDCLSKSTSGDSRNGLNMHISSGARKDE 642
Query: 786 TEHKLQGYKR---RGAPSFILLVIDATAGPFLELFNIVAEFRRDLQ-CNCKVVW-LDKPT 840
T + L +K+ RG SFIL+VIDA AGPF E+ N+VA FRR LQ +CKVVW L+
Sbjct: 643 TNYFLSVFKKTNLRGGNSFILIVIDARAGPFKEICNMVANFRRRLQGSHCKVVWLLENQM 702
Query: 841 SRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAG--SS 898
SR N G++ ND + +PFHGSRLY+VI+LLPEFGG S +G S
Sbjct: 703 SRISNDKGIDSNIYKSNDVFISRPFHGSRLYEVIRLLPEFGGTLETGESSTSYWSGNVSK 762
Query: 899 SYSKHPYRTGKSRSKAGRHEI---------QEEGSSSSEHSRRDIMPNASVLLKTGNSSG 949
S PY+ +S+SK G I Q+E +SS+ S +++ N + G+ +
Sbjct: 763 DLSSSPYQC-QSKSKEGNSPIFRGHIETRVQKETTSSNGTSPKNLSTN-QIHSCIGSKTR 820
Query: 950 EGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMM 1009
P I+ S+ EI EE + S +KPL GKK+LVA+D+++
Sbjct: 821 SSP---IVEQKSL----------------HQEIREEKYKHSSGEKPLSGKKVLVAEDNLV 861
Query: 1010 LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN 1069
L+++A +NL LGAT E CENG+ AL+LV +GL ++ GA + LPYDYILMDCEMPIM+
Sbjct: 862 LQKLARLNLERLGATTEICENGKEALELVCNGLXQSKEHGASNTLPYDYILMDCEMPIMD 921
Query: 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
GYEATR+IR+ E+ HIPIIALTAH +GEEA KTIEAGMDVHLGKPL ++ L+EAI Y
Sbjct: 922 GYEATREIRKVERYYNTHIPIIALTAHTTGEEAGKTIEAGMDVHLGKPLRKEKLLEAITY 981
>gi|15226594|ref|NP_182265.1| histidine kinase CKI1 [Arabidopsis thaliana]
gi|75097398|sp|O22267.1|CKI1_ARATH RecName: Full=Histidine kinase CKI1; AltName: Full=Protein
CYTOKININ-INDEPENDENT 1
gi|1679803|dbj|BAA13416.1| histidine kinase homolog [Arabidopsis thaliana]
gi|2529684|gb|AAC62867.1| putative histidine kinase [Arabidopsis thaliana]
gi|330255746|gb|AEC10840.1| histidine kinase CKI1 [Arabidopsis thaliana]
Length = 1122
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/1155 (42%), Positives = 688/1155 (59%), Gaps = 103/1155 (8%)
Query: 3 ALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISS-SATNLA 61
A V++ I W T+++ ++VA + L +++ S+IE+I + ++ S LA
Sbjct: 21 AFLVVVFECIWISNWRTTTENLVKEVASFTEDLRTSLVSEIENIGKFTYAKTNLSTIGLA 80
Query: 62 RVISSSLNNGTELSFSEIETKI-----------------SYIGLDGLFISYYVDGNQTLA 104
RVI S + N + F+EI+T+I SYI DGL SY + N ++A
Sbjct: 81 RVIDSYITN-NDTGFTEIQTQIAPLLFVAYSTILQVSQVSYISRDGLMFSYIAESNTSVA 139
Query: 105 LYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNST 164
+++NSS + ++G YTWY Q VD+ TG+L G + ++ V+ + WF A ++
Sbjct: 140 VFANSSSNS-------SRGDYTWYTQTVDQLTGRLNGNSTKSQSLDVTHTDWFQAAQSNN 192
Query: 165 DGLGSLGTGWS-KARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATN 223
+GT + + L + + +G VSLGFPVK +T + +NL+G L + T
Sbjct: 193 YTTAFVGTSLGGEDNETLIQSVVSLYSKKGLVSLGFPVKTLTEVLNSLNLHGEELYMWTK 252
Query: 224 DGKVLV-QGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYK 282
DG VLV +G N I N SI F +N+ Q P +C+S + I ++ Y+
Sbjct: 253 DGTVLVREGSLNDSFFISNGSICFGRESNS--LWSQCIPE---NCSSSGYEVEIKRLRYQ 307
Query: 283 AYCSQFEVAGVKSVYALAMPRKGLVSLV-HRTSKRALILLIVMTVGVLISMLTFVFKSAR 341
A+CS EV+GV Y L P KG + + H+ K L++VM + FV+ +
Sbjct: 308 AFCSVIEVSGVPLRYTLMFPNKGGATRIKHQAEKAKYQLIVVMIFLGFGWPVWFVWFMMQ 367
Query: 342 AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
A R+EMH+ A+LI QMEATQQAERKSMNKS AFANASHDIR ALAG+ GLI++C P
Sbjct: 368 ATRREMHMRATLINQMEATQQAERKSMNKSQAFANASHDIRGALAGMKGLIDICRDGVKP 427
Query: 402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
GS+++T L Q+NVCA DL+ LLNS+LD SK+E+GKMQL+EEDF++ +LLEDV+D +HPVA
Sbjct: 428 GSDVDTTLNQVNVCAKDLVALLNSVLDMSKIESGKMQLVEEDFNLSKLLEDVIDFYHPVA 487
Query: 462 MRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
M+KGV+VVLDP DGSV KFS V+GD +LKQIL+NL+SNAVKFT +GHI+VRA ++P +
Sbjct: 488 MKKGVDVVLDPHDGSVFKFSNVRGDSGRLKQILNNLVSNAVKFTVDGHIAVRAWAQRPGS 547
Query: 522 IGNPSLSSSRHGFLQSISCLFYKNKKARG--DLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
+ L+S G + + +F KNK+ + E N+ + + N MEF FEVDDTGKGIP
Sbjct: 548 NSSVVLASYPKGVSKFVKSMFCKNKEESSTYETEISNSIRNNANTMEFVFEVDDTGKGIP 607
Query: 580 KEKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
E RK+VFENYVQV+E G GTGLGLGIVQSLVRLMGG+I I DK GE+GTCF+FNV
Sbjct: 608 MEMRKSVFENYVQVRETAQGHQGTGLGLGIVQSLVRLMGGEIRITDKAMGEKGTCFQFNV 667
Query: 637 FLAIREA-SANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAP-SPSLSIRTNSPRL-NI 693
L E+ +D + E E AGGD + ++ LT+ S++IR SPR N
Sbjct: 668 LLTTLESPPVSDMKVRQEIE-AGGDYVS----TPNLGLTINTSLGGSMNIRNLSPRFNNC 722
Query: 694 LSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIH 753
LS + EGS VVLL+ NEERRR+ +K+++NLGI V+ V +WE L L+RL FG
Sbjct: 723 LSSSPKQEGSRVVLLLKNEERRRVTEKYIKNLGIKVTVVEKWEHLSYALERL---FG--F 777
Query: 754 SPHSSLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGA--PSFILLVIDATAG 811
SP SS+G+++ S S +E+P M+G + + Q KRR + +LLVIDA G
Sbjct: 778 SPQSSMGRAECSLSCPSS----RELPFIGMDGIDSRSQLPKRRSISFSAVVLLVIDAKTG 833
Query: 812 PFLELFNIVAEFRRDLQ--CNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSR 869
PF EL +IV +FRR L +CKVVWL++ ++R + D +P HGSR
Sbjct: 834 PFFELCDIVKQFRRGLPHGISCKVVWLNESSTR----------VSERGDISCSRPLHGSR 883
Query: 870 LYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEH 929
L +V+K+LPEFGG K + + S +H + +S +H++QEEG SS +
Sbjct: 884 LMEVLKMLPEFGGTVLK---EPPTELQRESLLRHSFVAERS----PKHKVQEEGPSSMFN 936
Query: 930 SR--RDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDG 987
+ + IM + +T S R+ I GN +E++
Sbjct: 937 KKLGKRIMASTDSESETRVKSVRTGRKPI----------GNPE------------DEQET 974
Query: 988 ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQR 1046
+ + LRGK++LV DD+ + R+VA L+ +G + VE C++G+ AL+LV GL +
Sbjct: 975 SKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQRE 1034
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG-EEADKT 1105
+ G+ LP+DYI MDC+MP M+GYEATR+IR+ EK V PIIA++ H G EEA +T
Sbjct: 1035 EQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARET 1094
Query: 1106 IEAGMDVHLGKPLNR 1120
I+AGMD L K LN+
Sbjct: 1095 IQAGMDAFLDKSLNQ 1109
>gi|297813131|ref|XP_002874449.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
gi|297320286|gb|EFH50708.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1113
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/1150 (40%), Positives = 680/1150 (59%), Gaps = 104/1150 (9%)
Query: 3 ALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISS-SATNLA 61
A V++ I W TK + +DVA + L +++ S+I++I + ++ S LA
Sbjct: 20 AFMVVVFGCIWISNWRTTTKSVAKDVASFTEDLRTSLVSEIQNIGKFTYLKTNLSTIGLA 79
Query: 62 RVISSSLNNGTELSFSEIETKI-----------------SYIGLDGLFISYYVDGNQTLA 104
R++ S L N + F+EI+T+I SYI DGL SY + N ++A
Sbjct: 80 RMVDSYLTNN-DTGFTEIQTQIAPLLFEAYSTIPQVSQVSYISRDGLLFSYIAESNTSVA 138
Query: 105 LYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNST 164
+++NSS + + G YTWY Q VD+ TG+L G A +K ++ + W A ++
Sbjct: 139 VFANSSSTS-------SGGDYTWYTQTVDQLTGRLNGNATKSKALDLTHTYWIQAAQSNN 191
Query: 165 DGLGSLGTGWS-KARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATN 223
LGT + + L + + +G VSLGFPVK +T++ +NL+G L + T
Sbjct: 192 YTTAFLGTSLGGEDSETLIQSVVSLYSKKGLVSLGFPVKTLTDVLNRLNLHGEELYMWTK 251
Query: 224 DGKVLV-QGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYK 282
DG VLV +G N I N SI F +K+ Q P +C+S + I + ++
Sbjct: 252 DGTVLVREGSLNASFFISNGSICFG--RESKSVWSQCIPD---NCSSSGYEVEIKRSTFQ 306
Query: 283 AYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISM-LTFVFKSAR 341
A+CS EV+GV Y L P KG + + +++A+ LIV+T+ + + L FV+ +
Sbjct: 307 AFCSVLEVSGVPLRYTLMFPNKGGATRIRHQAEKAMYQLIVVTIFLGLGWPLWFVWFMMQ 366
Query: 342 AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
A RKEMH+ A+LI QMEATQQAERKSMNKS AFANASHDIR ALAGI GLI++C E P
Sbjct: 367 ATRKEMHMRATLINQMEATQQAERKSMNKSQAFANASHDIRGALAGIKGLIDICCDEVKP 426
Query: 402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
GS ++T L+Q+NVC+ DL+ LLNS+LD SK+E+GKMQL+EEDF++ +LLEDV+D +HPVA
Sbjct: 427 GSNVDTTLKQVNVCSKDLVVLLNSVLDMSKIESGKMQLVEEDFNLAKLLEDVIDFYHPVA 486
Query: 462 MRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
M+KGV+VV DP DGS+ KF+ V+GD KLKQIL+NL+SN+VKFT++GHIS+RA ++P +
Sbjct: 487 MKKGVDVVFDPHDGSIFKFTNVRGDSCKLKQILNNLVSNSVKFTTDGHISIRAWAQRPGS 546
Query: 522 IGNPSLSSSRHGFLQSISCLFYKNKKARG--DLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
+ L+S G + + +F KNK ++E N+ + + N MEF FE DDTGKGIP
Sbjct: 547 KSSVVLASDIQGVSKILKSMFCKNKDQSSTYEIEISNSIRNNANTMEFVFEADDTGKGIP 606
Query: 580 KEKRKTVFENYVQVK-EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
E RK+VFENY+QV+ G GTGLGLGIVQSLVRLMGG+I I DK GE+GTCF FNV L
Sbjct: 607 IEMRKSVFENYIQVRGTGHQGTGLGLGIVQSLVRLMGGEIRITDKAMGEKGTCFEFNVLL 666
Query: 639 AIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAP-SPSLSIRTNSPRL-NILSP 696
E+ +N + AGGD + ++ LT+ S+++R SP+ N LS
Sbjct: 667 TTLESPPMNNMKVKQDIEAGGDYVS----TPNLGLTINTSLGGSMNLRNLSPKFNNCLSS 722
Query: 697 GSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPH 756
+ E S VVLL+ +EERRR+ +K+++N+GI VS V +WE L L+RL FG SP
Sbjct: 723 SPKQEWSRVVLLLKSEERRRVTEKYIKNVGIKVSVVEKWEHLSYALERL---FG--FSPQ 777
Query: 757 SSLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRR--GAPSFILLVIDATAGPFL 814
SS+G+++ S S +++PL M+G + + Q KRR P+ +LLVIDA GPF
Sbjct: 778 SSMGRAECSLSCSSS----RKLPLIGMDGIDSRSQLPKRRRNSFPALVLLVIDAKTGPFF 833
Query: 815 ELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVI 874
EL++ V +F +VWL++ ++ + D +P HGSRL +V+
Sbjct: 834 ELYDTVKQF---------LVWLNESST----------HVSERGDISCSRPLHGSRLMEVL 874
Query: 875 KLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSRRDI 934
K+LPEFGG R+ + + P R ++ +H+ QEEG SS +++
Sbjct: 875 KMLPEFGGT-------LLRETPTELQRESPLRYSFVAERSLKHKFQEEGLSSLRFNKK-- 925
Query: 935 MPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDG-ERSQAQ 993
L+ +S E + +L GN G +E+E G +
Sbjct: 926 --LGKTLMAPTSSESE-------TSVKLLRIGGNPIG---------NLEDEQGTSKPSDD 967
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQR-DLGAP 1051
+ LR K++LV DD+ + R+VA L+ +G + V+ C+NG+ AL+LV GL +R + G+
Sbjct: 968 EFLREKRVLVVDDNFLTRKVAIGKLKKMGVSEVKQCDNGKEALRLVTEGLTQRREEQGSV 1027
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG-EEADKTIEAGM 1110
LP+DYI MDC+MP M+GYEATR+IR+ EK VHIP+IA++ H G EA +TI+AGM
Sbjct: 1028 DNLPFDYIFMDCQMPDMDGYEATREIRKVEKSYGVHIPVIAVSGHDPGSREARETIQAGM 1087
Query: 1111 DVHLGKPLNR 1120
D L K LN+
Sbjct: 1088 DAFLDKNLNQ 1097
>gi|224125030|ref|XP_002319485.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222857861|gb|EEE95408.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1001
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/1072 (42%), Positives = 635/1072 (59%), Gaps = 131/1072 (12%)
Query: 81 TKISYIGLDGLFISYYVDGNQTLALYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLY 140
+++SYIGLDGL S+Y D +QT ++YSN+SFS W+ QPV+RDTGKLY
Sbjct: 30 SQVSYIGLDGLLFSFYNDEDQTFSIYSNTSFSSQ------------WFTQPVNRDTGKLY 77
Query: 141 GEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFP 200
G+A+ + P S+WF KALNST G S+ TGW+KA+D+LFLNTA ++G RG VSLGFP
Sbjct: 78 GDAVASDPKVTVNSSWFQKALNSTSGHSSMDTGWNKAQDSLFLNTAAVDG-RGVVSLGFP 136
Query: 201 VKPITNLFAGINLYGGRLSIATNDGKVLVQG-IPNTRMTIVNDSISFQLITNTKTRAQQM 259
V+ + N FA ++ +GG + T +G+V+VQ +PN+++ I ND++ Q T +
Sbjct: 137 VEVVINHFAALDFHGGFFHLGTANGQVVVQTKLPNSQIEIHNDTVMVQ------TMKRNG 190
Query: 260 NPV--KNVSCTSGNGTL-----SIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHR 312
+P+ N+SC +G L I I Y YCS ++AG+KSVY LA PR GLV LVHR
Sbjct: 191 DPLGHYNISCDPEDGRLRPLHKKIVGIKYMFYCSTLDIAGLKSVYVLAYPRNGLVHLVHR 250
Query: 313 TSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSL 372
S +L+LL ++ + ++IS+ T++F +ARA +EM LCASLIKQ EATQQAERKSMNK+
Sbjct: 251 NSMLSLLLLALVFIFIVISLCTYLFLTARATNREMFLCASLIKQTEATQQAERKSMNKTK 310
Query: 373 AFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKV 432
AFA A+HD+R +LA + I C EA P S+L L Q+ DLLG+LNSILD SK+
Sbjct: 311 AFAGANHDVRNSLAAVRASIHFCQEEANPESKLAAQLVQLENHTKDLLGILNSILDMSKI 370
Query: 433 EAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQ 492
EAGK L EDF++ ELLE+VVD+F+P+ M KG+++VLDP DGS LK + V+GDR+KLKQ
Sbjct: 371 EAGKTSLEIEDFNLAELLEEVVDMFYPLGMNKGIDIVLDPCDGSTLKSANVRGDRLKLKQ 430
Query: 493 ILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDL 552
IL NL++NA+KFTSEGH+S+R VKK + ++S+R ++ +S YKN+ + DL
Sbjct: 431 ILCNLVNNAIKFTSEGHVSIRTVVKKKN-FRKEIIASNRTTVMKFLSRFCYKNQDSFNDL 489
Query: 553 EAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE---GEGGTGLGLGIVQS 609
+A+N + + N +EF FEVDDTGKGIPK+K+K++FE+YVQVKE G+ GTGLGLGIVQS
Sbjct: 490 DALNTVEENPNEVEFEFEVDDTGKGIPKDKQKSLFEDYVQVKETATGQEGTGLGLGIVQS 549
Query: 610 LVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQ 669
LVR+M G++ IV+KE GERGTCF+FNVFL+ E + E E SA
Sbjct: 550 LVRVMKGELRIVEKELGERGTCFKFNVFLSSVEPKS------AEPEEDRRSSAF------ 597
Query: 670 HMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINV 729
H + +P P EGSHV++ I EERR++ +K++E L I V
Sbjct: 598 HQHFPFMSPKP--------------------EGSHVIIFIPGEERRKVLKKYIERLNIKV 637
Query: 730 SAVSRWERLHSTLKRLKSKFGSIH----SPHSSLGKSDLSSRSDSESASFKEVPLSAMEG 785
+ + + L L+++K K + P ++L S S + + L+ +
Sbjct: 638 TIIKQVMNLQLELEKVKRKLDLSYFISGKPENTLDDYLSKSASTNSDRGSLDGSLNIKDE 697
Query: 786 TEHKLQGY---KRRGAPSFILLVID---ATAGPFLELFNIVAEFRRDL-QCNCKVVWLDK 838
+H Y + + S ILLVID AT+ P + NI+A R+D+ + CKVVWL+
Sbjct: 698 GDHITPHYKKTNSKSSSSIILLVIDVNEATSYPNFQ--NILANLRKDIGKSLCKVVWLED 755
Query: 839 PTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSS 898
P + D ++D D VL KP HGS L +V+ LLPE G A
Sbjct: 756 PIMGHSS-DEVKDRVTAEGDYVLHKPLHGSCLSQVLSLLPERKG------------ASHC 802
Query: 899 SYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMP 958
++SK RT +QE + + D+ + + L + P
Sbjct: 803 NFSKSTRRTT----------VQEVQDCADSNLSNDLSCSEIIELDLAS-----------P 841
Query: 959 NASVLLKT--GNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEI 1016
+S L T + E S+ PL GK +LV +DSM+L+R+
Sbjct: 842 QSSSLQPTTANKPTVEAGSK------------------PLNGKNVLVVEDSMLLQRLTSS 883
Query: 1017 NLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076
L+ LGA+VE C NG+ A V L+DQ+ G LPYD I MDCEMP+MNG+EATR
Sbjct: 884 VLKKLGASVEVCTNGKEAFDEVSKSLSDQKKEGDSISLPYDIIFMDCEMPVMNGFEATRL 943
Query: 1077 IR-EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
IR EEE+ + VHIPIIALTAH E+ K +AGMD HL KPL ++E I
Sbjct: 944 IRMEEEQYSGVHIPIIALTAHAMPEQTSKVFDAGMDFHLTKPLEERKMLEVI 995
>gi|297828473|ref|XP_002882119.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
gi|297327958|gb|EFH58378.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1125
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/1158 (41%), Positives = 685/1158 (59%), Gaps = 109/1158 (9%)
Query: 3 ALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISS-SATNLA 61
A V++ I W T ++ +DVA + L +++ S+IE+I +P ++ S LA
Sbjct: 21 AFLVVVFGCITISEWRTTTDNVAKDVASFTKDLRTSIVSEIENIGKFTYPKTNLSTIGLA 80
Query: 62 RVISSSLNNGTELSFSEIETKI-----------------SYIGLDGLFISYYVDGNQTLA 104
RVI S L N ++ F+EI+T+I SYI DGLF SY + N ++A
Sbjct: 81 RVIDSYLTNN-DIGFAEIQTQIAPLLFEAYSTIPQVSQVSYISRDGLFFSYIAESNTSVA 139
Query: 105 LYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNST 164
+++NSS + + G YTWY Q +D+ TG+L G A ++P ++ + WF A ++
Sbjct: 140 VFANSSSN-------SSGGDYTWYTQNIDQLTGRLNGNATKSQPLDLTHTDWFQAAQSNN 192
Query: 165 DGLGSLGTGW-SKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATN 223
LGT K + L + + +G VSLGFPVK +T++ +NL+G L + T
Sbjct: 193 YTTTFLGTSLGEKDNETLIQSVVSLYNKKGLVSLGFPVKTLTDVLNSLNLHGEELYMWTK 252
Query: 224 DGKVLV-QGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYK 282
DG VLV +G N I N SI F ++K+ Q + +C++ + I + Y+
Sbjct: 253 DGTVLVREGSLNASFFISNGSICFG--RDSKSVWSQ---CISENCSTIGYKVEIKRSTYQ 307
Query: 283 AYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISM-LTFVFKSAR 341
A+CS EV+GV Y L P +G + + + +A+ LIV+ + + + + FV+ +
Sbjct: 308 AFCSVLEVSGVPLRYTLMFPNEGGATRIKHQADKAMYQLIVVVIFLGLGWPVWFVWFMMQ 367
Query: 342 AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
A R+EM + A LI QMEATQQAERKSMNKS AFANASHDIR ALA + GLI++C E P
Sbjct: 368 ATRREMRMRAMLINQMEATQQAERKSMNKSQAFANASHDIRGALAAMKGLIDICRDEVKP 427
Query: 402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
GS+++T L+Q+N C+ DL+ LLNS+LD SK+E+GKMQL+EEDF++ +LLEDV D +HPVA
Sbjct: 428 GSDIDTTLKQVNACSKDLVVLLNSVLDMSKIESGKMQLVEEDFNLSKLLEDVTDFYHPVA 487
Query: 462 MRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
M+KGV+VVLD DGS+ KFS V+GD KLKQIL+NL+SNAVKFT +GHI +RA ++P +
Sbjct: 488 MKKGVDVVLDSHDGSIFKFSNVRGDSGKLKQILNNLVSNAVKFTVDGHILIRAWAQRPGS 547
Query: 522 IGNPSLSSSRHG---FLQSISCLFYKNKKARGDLEA--VNAAQRDENAMEFTFEVDDTGK 576
+ L+S G FL+S+ C KNK + EA N+ + + N MEF FEVDDTGK
Sbjct: 548 KSSVILASDPQGVSKFLKSMLC---KNKDQSSNYEAEISNSIRNNANTMEFVFEVDDTGK 604
Query: 577 GIPKEKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFR 633
GIP E RK+VFENYVQV+E G+ GTGLGLGIVQSLVRLMGG+I I DK GE+GTCF+
Sbjct: 605 GIPMEMRKSVFENYVQVRETAQGQQGTGLGLGIVQSLVRLMGGEIRITDKAMGEKGTCFQ 664
Query: 634 FNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAP-SPSLSIRTNSPRL- 691
FNV L E+ + AGGD + + LT+ S++IR SPR
Sbjct: 665 FNVLLTTLESPPVSDMKVRPDIQAGGDYIS----TPDLGLTINTSLGGSMNIRNLSPRFN 720
Query: 692 NILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGS 751
N LS + E S VVLL+ NEERRR+ +K+++NLGI V+ V +WE L L+RL FG
Sbjct: 721 NCLSSSPKQECSRVVLLLKNEERRRVTEKYIKNLGIKVTMVEKWEHLSYALERL---FG- 776
Query: 752 IHSPHSSLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGA--PSFILLVIDAT 809
SP SS+G+++ S S +E+PL M+G + + Q KRR + +LLVIDA
Sbjct: 777 -FSPQSSMGRAE----SSLSCPSSRELPLIGMDGIDSRSQLPKRRSTSFSAVVLLVIDAK 831
Query: 810 AGPFLELFNIVAEFRRDLQ--CNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHG 867
GP LEL++IV +FR+ L CKVVWL++ ++R + D +P HG
Sbjct: 832 TGPLLELYDIVKQFRKGLPHGITCKVVWLNESSTR----------VSERGDISCSRPLHG 881
Query: 868 SRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSS 927
SRL +V+K+LPEFGG K + + S +H + +S +H+ QEEG S
Sbjct: 882 SRLMEVLKMLPEFGGTVLK---ETPTELQRESLLRHSFVAERS----PKHKFQEEGPCSM 934
Query: 928 EHSR--RDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSG-EGSSRYKQTEIEE 984
+ + + IM + +T S R+ I GN+ EG+S+ E
Sbjct: 935 FNKKLGKTIMAPTASESETRIKSVSSGRKPI----------GNAEDEEGTSKPSDDEF-- 982
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLN 1043
LRGK++LV DD+ + R+VA L+ +G + V C++G+ AL+LV GL
Sbjct: 983 -----------LRGKRVLVVDDNFLTRKVATGKLKKMGVSEVLQCDSGKEALRLVTEGLT 1031
Query: 1044 DQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG-EEA 1102
+ + + + LP+DYI MDC+MP M+GYEATR+IR+ EK V IP+IA++ H G EA
Sbjct: 1032 QKEEQCSVNKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRIPVIAVSGHDPGSREA 1091
Query: 1103 DKTIEAGMDVHLGKPLNR 1120
+T++AGMD L K LN+
Sbjct: 1092 RETVQAGMDAFLDKSLNQ 1109
>gi|297819670|ref|XP_002877718.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
gi|297323556|gb|EFH53977.1| cytokinin-independent 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1063
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/1085 (40%), Positives = 629/1085 (57%), Gaps = 125/1085 (11%)
Query: 68 LNNGTELSFSEIETKI-----------------SYIGLDGLFISYYVDGNQTLALYSNSS 110
L++ + FSEI+TKI SYI GL SY + N ++A+++NSS
Sbjct: 56 LSHQQDTDFSEIQTKIAPLLFEAYSTIPQVSQVSYISRAGLLFSYIAESNTSVAVFANSS 115
Query: 111 FSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSL 170
+ + G YTWY Q VD+ TG+L G A ++P ++ + WF A + L
Sbjct: 116 STS-------SGGDYTWYTQTVDQLTGRLNGNATKSQPLDLTHTDWFQVAQSDNYTTAFL 168
Query: 171 GTGWS-KARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLV 229
GT + + L + + +G VSLGFPVK +T++ +NL+G L + T D +LV
Sbjct: 169 GTSLGGEDNETLIQSVVSLYNNKGLVSLGFPVKTLTDVLNSLNLHGEELYMWTKDETMLV 228
Query: 230 -QGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQF 288
QG N + N SI F +K+ Q P +C+S + I + ++A+CS
Sbjct: 229 RQGSLNASFFVSNGSICFS--RESKSIGSQCIPY---NCSSSGYEVEIKRSKFQAFCSVL 283
Query: 289 EVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISM-LTFVFKSARAARKEM 347
EV+GV Y L P K + + +++A+ LIV+T+ + L FV+ +A R+EM
Sbjct: 284 EVSGVSLRYTLMFPNKSGATRIRDQAEKAMYQLIVVTIFFGLGWPLWFVWFMMQATRREM 343
Query: 348 HLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET 407
H+ A LI QMEATQQAERKSMNKS AFANASHDIR ALAGI GLI++C E PGS+++T
Sbjct: 344 HMRAVLINQMEATQQAERKSMNKSQAFANASHDIRGALAGIKGLIDICRDEVKPGSDVDT 403
Query: 408 NLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE 467
LRQ+NVC+ DL+ LLNS+LD SK+E+GKM L+EEDF++ +LLED++D +HPVAM+KGV+
Sbjct: 404 TLRQVNVCSKDLVVLLNSVLDMSKIESGKMHLVEEDFNLAKLLEDIIDFYHPVAMKKGVD 463
Query: 468 VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
VVLD +GS+ KFS V+GD KLKQIL+NL+SNAVKFT +GHIS+RA ++PS+ + L
Sbjct: 464 VVLDLHNGSIFKFSNVRGDSGKLKQILNNLISNAVKFTVDGHISIRAWAQRPSSKSSVVL 523
Query: 528 SSSRHGFLQSISCLFYKNK--KARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
+S G + + +F KNK + + E N+ + + N MEF FEVDDTG+GIP E RK+
Sbjct: 524 ASDPQGVSKILKSMFCKNKDQSSTCETEISNSIRNNANTMEFVFEVDDTGRGIPMEMRKS 583
Query: 586 VFENYVQVKEG-EGGTGLGLGIVQ-SLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
VFEN VQV+E GTGLGLGIVQ SLVRLMGG+I I DK GE+GTCF+FNV L ++
Sbjct: 584 VFENNVQVRETRHQGTGLGLGIVQSSLVRLMGGEIRITDKAMGEKGTCFQFNVLLTTLDS 643
Query: 644 SANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRL-NILSPGSRHEG 702
+ + GG+ + +N ++ A ++IR SPR N LS + E
Sbjct: 644 PPVSDMKAKQDIEVGGEYVSTPNLGLTINTSLGAI---MNIRNLSPRFNNCLSSSPKQEC 700
Query: 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKS 762
S VVLL+ NEERRR+ +K+++NLGI VS V +WE L L+RL FG SP SS+G++
Sbjct: 701 SRVVLLLKNEERRRVTEKYIKNLGIKVSVVEKWEHLSYALERL---FG--FSPQSSMGRA 755
Query: 763 DLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRR--GAPSFILLVIDATAGPFLELFNIV 820
+ S + S +E+PL M+G + + Q K+R + +LLVIDA GPF EL++IV
Sbjct: 756 ECSLSNPSS----RELPLIGMDGIDSRSQLPKKRSNSFSALVLLVIDAKTGPFFELYDIV 811
Query: 821 AEFRRDLQ--CNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLP 878
+FRR L CKVVWL++ ++R + D +P HGS L +V+K+LP
Sbjct: 812 KQFRRGLPHGITCKVVWLNESSTR----------VSEKGDISCSRPLHGSHLMEVLKMLP 861
Query: 879 EFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSRRDIMPNA 938
EFGG K + + S +H + +S + R SS SE + +
Sbjct: 862 EFGGTFLK---ETPTELQRESLLRHSFVAERSPKQNSR-------SSESETWVKSVRTGG 911
Query: 939 SVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRG 998
+++ GN E +G+S+ E LRG
Sbjct: 912 NLI---GNPEDE---------------------QGTSKPSDDEF-------------LRG 934
Query: 999 KKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQR-DLGAPHILPY 1056
K++LV DD+ ++R+VA L+ +G + V+ C++G+ AL+LV GL +R + G+ + LP+
Sbjct: 935 KRVLVVDDNFLIRKVATGKLKKMGVSEVKQCDSGKEALRLVTEGLAQRREEQGSIYNLPF 994
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG-EEADKTIEAGMDVHLG 1115
DYI MDC+ IR+ EK V IP+IA++ H G EA +TI+AGMD L
Sbjct: 995 DYIFMDCQ------------IRKVEKSYGVRIPVIAVSGHDHGSREARETIQAGMDAFLD 1042
Query: 1116 KPLNR 1120
K LN+
Sbjct: 1043 KNLNQ 1047
>gi|255576481|ref|XP_002529132.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223531411|gb|EEF33245.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 671
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/657 (54%), Positives = 464/657 (70%), Gaps = 33/657 (5%)
Query: 3 ALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLAR 62
++ VLLLP+ ++P+WYK+ + ++ +V L++ S M S+IE+ A LLHPI+S+ATNL R
Sbjct: 19 SIGVLLLPSVVVPWWYKIIQQMKNEVDLNARMFGSGMLSEIENTAKLLHPINSTATNLVR 78
Query: 63 VISSSLNNGTELSFSEIETK-----------------ISYIGLDGLFISYYVDGNQTLAL 105
++SSSLN G LS EIE+K ISY GL+G F +YY DGN+T AL
Sbjct: 79 ILSSSLN-GNNLSQFEIESKVAPMLFQTFSVTPLISQISYFGLEGPFFAYYRDGNKTYAL 137
Query: 106 YSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTD 165
YSNSS + + KYTWYKQ VD DTGKLYG A ++ S ++ ++W +AL S +
Sbjct: 138 YSNSSAYSSSSSALKLPIKYTWYKQAVDPDTGKLYGNANESQVSFLANASWIQEALASGN 197
Query: 166 GLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDG 225
G S+G GW+ A+D +FLN+ + G +G +SL FPV + N F I+LYGG L +AT G
Sbjct: 198 GYASIGNGWNSAQDLMFLNSVTMLG-QGVISLWFPVNALINFFNAIDLYGGCLYLATLSG 256
Query: 226 KVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNG-----TLSIGKIH 280
VL G+PNT+M + S+SF L+ Q+ + + SC NG L IG
Sbjct: 257 NVLANGLPNTQMVVTGKSVSFSLM---NLNGDQIEHLGSFSCMPDNGMLRPSILKIGDTE 313
Query: 281 YKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSA 340
Y AYCSQ E+ GV+SVYALA P LVS V R++K ALILL+VM V S+L+FV
Sbjct: 314 YMAYCSQLEIVGVQSVYALAFPYHKLVSSVDRSTKVALILLMVMIAAVFFSILSFVLLMV 373
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
RAA +E+HLC++LIKQMEATQQAERKSMNKSLAFA+A+HDIRAALAGITGLIE+ Y E
Sbjct: 374 RAATREIHLCSALIKQMEATQQAERKSMNKSLAFASATHDIRAALAGITGLIEISYGEVS 433
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
P +L+TNL+QM+ C DL+GLLNS+LDTSK+EAGKMQ+ E+FD+ LLEDVVDLFH V
Sbjct: 434 P-YQLQTNLQQMDDCVKDLVGLLNSVLDTSKIEAGKMQVELEEFDLANLLEDVVDLFHAV 492
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
M+KG++++LDP DGS+LKFS VKGDR KLKQ+L NLL NAVKFTSEGH+SVR +K S
Sbjct: 493 GMKKGLDIILDPCDGSILKFSNVKGDRGKLKQVLCNLLGNAVKFTSEGHVSVRVWAQKAS 552
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
+ N ++S+ + SC F N K D+E +N+ +++ N +EF FEVDDTG GIPK
Sbjct: 553 -MENMIIASNPKELWKLCSCWF-MNHKEDHDVEIMNSMKQNPNCIEFMFEVDDTGIGIPK 610
Query: 581 EKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
EK+K+VFEN+VQVKE G+GGTGLGLGIVQSLVRLMGG+I IVDKE E+GTCFRF
Sbjct: 611 EKQKSVFENFVQVKETAFGQGGTGLGLGIVQSLVRLMGGEIGIVDKELSEKGTCFRF 667
>gi|297743973|emb|CBI36943.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/683 (55%), Positives = 477/683 (69%), Gaps = 70/683 (10%)
Query: 1 MQALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNL 60
MQA VLLLP+ +IP WY K IE D LSS +LH+ + S+I+S A L+HP+++SA NL
Sbjct: 1 MQAFLVLLLPSVVIPLWYDTIKKIEHDAKLSSQKLHTELLSEIKSTAELVHPMNASAMNL 60
Query: 61 ARVISSSLNNGTELSFSEIE-----------------TKISYIGLDGLFISYYVDGNQTL 103
ARV+++S++ G +L FSEI+ ++ISYIG+DGL SYY G++
Sbjct: 61 ARVLNASVS-GMKLPFSEIKNRVAPMLFQALSITPHVSQISYIGIDGLLFSYYAHGSEIF 119
Query: 104 ALYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNS 163
ALYSNSS S N + YTWY Q D DTGKLYG+ I + P V ++WF +A+NS
Sbjct: 120 ALYSNSSISVNSSS--PNATAYTWYIQRADSDTGKLYGKVITSPPLVVVNASWFEEAMNS 177
Query: 164 TDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATN 223
T+G SLGT W+ +D LFLNTA ++G RGAVSLGFPVK +T+ + I+L+ G L +AT
Sbjct: 178 TNGYSSLGTEWNSVQD-LFLNTAKVDG-RGAVSLGFPVKEVTDFLSVIDLHDGSLCLATE 235
Query: 224 DGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGT-----LSIGK 278
D KVL++G+PNT++ + NDSISF+++ N Q++ V NVSC + + T L+I
Sbjct: 236 DNKVLIEGLPNTQIMVSNDSISFKVVENQD--GDQISHVGNVSCKADDRTPKASVLNISN 293
Query: 279 IHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFK 338
Y YCSQ E+ GVKSVYALA P +GL S VH++S+ ALIL IVM V ++I + F+F
Sbjct: 294 KDYVVYCSQLEIMGVKSVYALAFPYRGLESRVHKSSRSALILHIVMVVIMVILVSMFMFL 353
Query: 339 SARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVE 398
AAR+EM+L A LIKQM+ATQQAERKSMNKSLAFA+ASHD+RA+LAG+TGLI++ E
Sbjct: 354 LVGAARREMYLRAKLIKQMDATQQAERKSMNKSLAFASASHDVRASLAGLTGLIDISKDE 413
Query: 399 AGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFH 458
PGSE+ETNL QM C DLLG+LNSILDTSK+EAGKMQL EE+F++ ELLEDVVDL+H
Sbjct: 414 VAPGSEIETNLIQMEGCTKDLLGILNSILDTSKIEAGKMQLEEEEFNLEELLEDVVDLYH 473
Query: 459 PVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK 518
PV M+KGV+VVLDP DGSV KFS+VKGDR+KLKQ+L NLLSNAVKFTSEGH+S+RA KK
Sbjct: 474 PVGMKKGVDVVLDPHDGSVAKFSRVKGDRMKLKQVLCNLLSNAVKFTSEGHVSIRAWAKK 533
Query: 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
P Q++ N MEF FEVDDTGKG+
Sbjct: 534 P--------------------------------------IQKNPNCMEFVFEVDDTGKGV 555
Query: 579 PKEKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
PKEK+K+VFENYVQVKE G GGTGLGLGIVQSLVRLMGGDI IVDKE G +GTCFRFN
Sbjct: 556 PKEKQKSVFENYVQVKETALGTGGTGLGLGIVQSLVRLMGGDIGIVDKEIGAKGTCFRFN 615
Query: 636 VFLAIREASANDNNTQGEKELAG 658
+FL + +D+ + + E G
Sbjct: 616 IFLTTCDTVPSDHGKEEDIEAQG 638
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 116/152 (76%), Gaps = 2/152 (1%)
Query: 978 KQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
K+ EI+E S Q PLRGK++L+A+DSM+L ++A ++ LG TVEAC+NG A++L
Sbjct: 737 KEPEIQEVG--TSSNQNPLRGKRVLIAEDSMVLCKLATAHVTRLGGTVEACDNGAKAVEL 794
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
V +GL + A ILPYDYILMDCEMP M+GYEAT++IREEE++ VHIPIIALTAH
Sbjct: 795 VCNGLRNNTKNNASIILPYDYILMDCEMPEMDGYEATKRIREEEQQYGVHIPIIALTAHA 854
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
+GEEA +TIEAGMD HL KPL R+ LM AI+Y
Sbjct: 855 NGEEAKRTIEAGMDYHLSKPLKRETLMGAIEY 886
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 3/66 (4%)
Query: 797 GAPSFILLVIDATAGPFLELFNIVAEFRRDLQ--CNCKVVWLDKPTSRSINFDGLEDETM 854
G P FIL++I+ATAGPF EL VAEFR+DLQ C C+ VWLDKPT RS+NF + +E +
Sbjct: 642 GTPRFILILIEATAGPFPELCRAVAEFRKDLQNTC-CRAVWLDKPTLRSVNFRDVPEEMI 700
Query: 855 DPNDDV 860
PND V
Sbjct: 701 SPNDLV 706
>gi|255542874|ref|XP_002512500.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223548461|gb|EEF49952.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 912
Score = 583 bits (1504), Expect = e-163, Method: Compositional matrix adjust.
Identities = 338/750 (45%), Positives = 469/750 (62%), Gaps = 66/750 (8%)
Query: 154 STWFLKALNSTDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINL 213
++WF KA NST G S+GTGW++A+D+LFLNTA ++G RG +SLGFP K I + F+ ++
Sbjct: 6 ASWFEKAKNSTSGYSSIGTGWNRAQDSLFLNTAAMDG-RGVISLGFPTKAIIDNFSALDF 64
Query: 214 YGGRLSIATNDGKVLVQGIP-NTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNG 272
+GG + T DG+V++Q IP +T++ ++N S++ Q+ + Q N+SC S +G
Sbjct: 65 HGGYFYLGTVDGQVIMQTIPPDTQIDMLNGSVTVQIFNPNGGKMGQ----DNLSCFSVDG 120
Query: 273 TLSI--GKI---HYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVG 327
L GKI Y YCS +AGV+SVY LA PR GLV+LV R K + ILL ++ V
Sbjct: 121 KLRPLHGKIVGNRYIFYCSNLYIAGVQSVYVLAYPRDGLVNLVQRNIKLSTILLALVFVF 180
Query: 328 VLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAG 387
+ S L ++ + RA ++EM LCA+LIKQ EATQQAERKSMNK+ A+A A+HD+RA+LA
Sbjct: 181 IFTSFLIYMVMTVRATKREMFLCAALIKQTEATQQAERKSMNKTKAYAGANHDVRASLAA 240
Query: 388 ITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447
ITGLIELC + GSEL TNL QM C DLL +LNS+LD SK+EAGK L E+F++
Sbjct: 241 ITGLIELCQDDVKSGSELATNLDQMQNCTRDLLEILNSVLDMSKIEAGKTSLEIEEFNLA 300
Query: 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE 507
+LLEDVV +++P+ M+K V++VLDP D S K V+GDR+KLKQIL NLLSNA+KFTS
Sbjct: 301 QLLEDVVGMYYPLGMKKCVDIVLDPCDAS--KLPDVRGDRIKLKQILCNLLSNAIKFTSA 358
Query: 508 GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEF 567
GH+SVRA VKK + I ++SS L+ +S + +NK A DL+A + + + N MEF
Sbjct: 359 GHVSVRAVVKKKN-IEKEIIASSTTA-LKFLSWMRRRNKDACTDLDAFHTVKENPNEMEF 416
Query: 568 TFEVDDTGKGIPKEKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKE 624
FEVDDTG+GIPK+K+ ++FE+YVQVKE G+ G GLGLGIVQSLVR+M G++ I++KE
Sbjct: 417 EFEVDDTGQGIPKDKQTSIFEDYVQVKETAIGQEGCGLGLGIVQSLVRVMKGELTIIEKE 476
Query: 625 NGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSI 684
GERGTCFRFNVFL+ + + + PS
Sbjct: 477 PGERGTCFRFNVFLST-------------------------CESESFSTEESRPSSGF-- 509
Query: 685 RTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKR 744
+SP S EGSH++L I +ERRR+ ++++E+L I V+ + S L++
Sbjct: 510 ---HQHFQFMSPKS--EGSHMILFIKGDERRRVLKRYIESLNIKVTIIKHGRYFRSELEK 564
Query: 745 LK-----SKFGSIHSPHSSLG--KSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRG 797
+K S F S + SS+ + SS SD E+ S + LS +G + L +K+
Sbjct: 565 IKRRLDLSYFASGKTDSSSVDYLSASTSSHSDPEANSKR---LSIKDGADSGLPQFKKTN 621
Query: 798 APS---FILLVIDATA-GPFLELFNIVAEFRRD-LQCNCKVVWLDKPTSRSINFDGLEDE 852
+ S IL VID+ A + E + + FR+D ++ +CKVVWLD SR +D
Sbjct: 622 SKSSSGIILFVIDSDAVSSYREFEHTLVSFRKDIIKSSCKVVWLDDQISRQAGSQE-QDR 680
Query: 853 TMDPNDDVLLKPFHGSRLYKVIKLLPEFGG 882
+ D V KPFHGSRL +V+ LLPE G
Sbjct: 681 RISEGDYVTYKPFHGSRLTQVLSLLPERKG 710
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 106/154 (68%), Gaps = 2/154 (1%)
Query: 975 SRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAA 1034
S ++Q + + D + + KPL GKK+LV +D+ +LRR+ L LGA VEAC NGE A
Sbjct: 756 SSFQQVVMNKPDEKHND--KPLNGKKVLVVEDAELLRRIVTTTLGKLGANVEACTNGEEA 813
Query: 1035 LQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALT 1094
L V L+DQ+ G +PYDYI MDCEMP+MNGYEATR IR EE+++ VHIPIIALT
Sbjct: 814 LTQVCKALSDQKKEGDSKSIPYDYIFMDCEMPVMNGYEATRLIRIEERKHDVHIPIIALT 873
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
AH EEA K+I+AGMD HL KPL D L+ I+
Sbjct: 874 AHAMPEEASKSIDAGMDFHLNKPLQVDKLLGVIQ 907
>gi|357442269|ref|XP_003591412.1| Signal transduction histidine-protein kinase barA [Medicago
truncatula]
gi|355480460|gb|AES61663.1| Signal transduction histidine-protein kinase barA [Medicago
truncatula]
Length = 646
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 322/654 (49%), Positives = 426/654 (65%), Gaps = 65/654 (9%)
Query: 3 ALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLAR 62
A L++ ASL P WY M HIE+ V L S + S +QS+IE A LLHP+ SS+TNL+
Sbjct: 14 AYGALIVLASLTPCWYLMVTHIEKSVNLHSANIVSQLQSEIEYSAELLHPMKSSSTNLST 73
Query: 63 VISSSLNNGTELSFSEIETK-----------------ISYIGLDGLFISYYVDGNQTLAL 105
++SS+LN+ T ++FS++ TK ISYIG++GLF ++Y DG+Q LA+
Sbjct: 74 LLSSTLNS-TNITFSDVHTKVAPLLFQALKTIPHLTQISYIGMEGLFFTHYNDGDQVLAM 132
Query: 106 YSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTD 165
YSNSS A K +Y Q V+ DTG ++GEAI++ + ++W +N T+
Sbjct: 133 YSNSSSGG-------ASNKTLYYIQHVNHDTGMVFGEAIISNNTINIDASW----INGTN 181
Query: 166 G-----LGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGI-NLYGGRLS 219
SLGT + D LF+N+A IN G +SLGF K IT+ I + G +
Sbjct: 182 NNISHEFASLGTKLNNVSDLLFMNSARINKI-GGISLGFSTKVITDYITRIVDRQGTKSY 240
Query: 220 IATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKN---VSC--TSGNGTL 274
+AT DGKV+V+GI N R+ I NDS+S Q + + ++N VSC + +L
Sbjct: 241 LATKDGKVIVKGIQNIRLMIFNDSVSIQAVNGNG------DLIRNEGAVSCKDQAVGSSL 294
Query: 275 SIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRA--LILLIVMTVGVLISM 332
+I Y +C ++ G++SV+ LA+P+ G SL+ S + L LLIVM V + I++
Sbjct: 295 NIHDTPYLIHCYPIDIMGIESVHVLAVPQNG--SLIFNPSHKGKGLTLLIVMMVMIFIAI 352
Query: 333 LTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLI 392
L+F+F + ++EMHLCASL++Q EAT+QAERK+ NKSLAFA ASHD+RA LAG+ GLI
Sbjct: 353 LSFLFLNLGVTKREMHLCASLMQQKEATEQAERKNTNKSLAFATASHDLRAYLAGLIGLI 412
Query: 393 EL----------CYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEE 442
E+ P SELETNL+QM+ CA DLLGLLNSILDTSK+EAGKMQL EE
Sbjct: 413 EMSSKLVVTNSKLETNLKPSSELETNLKQMDNCAQDLLGLLNSILDTSKIEAGKMQLEEE 472
Query: 443 DFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAV 502
+FD+ LLEDVVDL+HP+AM+KGVEVVLD +GSV+K S+VKGDR KLKQ+L NLLSNAV
Sbjct: 473 EFDLSNLLEDVVDLYHPMAMKKGVEVVLDSCNGSVIKHSRVKGDRRKLKQVLCNLLSNAV 532
Query: 503 KFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562
KFT EGHI+VRA +K + + N ++ ++ +S LF K K D+EAVN AQ+D
Sbjct: 533 KFTDEGHITVRAWTQK-AKLQNSKTKTNHKSVMKHLSWLFNKKDKECEDIEAVNLAQQDP 591
Query: 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRL 613
M+F FEVDDTGKGIPKE K+VFENYVQVKE G+ GTGLGLGIVQSLV L
Sbjct: 592 CLMDFVFEVDDTGKGIPKENHKSVFENYVQVKENSVGQVGTGLGLGIVQSLVLL 645
>gi|242094944|ref|XP_002437962.1| hypothetical protein SORBIDRAFT_10g005590 [Sorghum bicolor]
gi|241916185|gb|EER89329.1| hypothetical protein SORBIDRAFT_10g005590 [Sorghum bicolor]
Length = 1035
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 328/862 (38%), Positives = 462/862 (53%), Gaps = 118/862 (13%)
Query: 281 YKAYCSQFEVAGVKSVYALAM--PRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFK 338
YKA C+ +V+GV+ L + P +G ++ ++L + V ++S V
Sbjct: 273 YKAACAMLDVSGVQVALRLVLRPPVQG--HMLQALCVAVIVLACALLVLAVVSCAFAVRA 330
Query: 339 SARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVE 398
RA+ +EM L A L++Q EA +QAERKSMNKS AFA+ASHDIR+ALA I GL+++ E
Sbjct: 331 LRRASAREMALNADLVRQKEALRQAERKSMNKSNAFASASHDIRSALAAIAGLVDMSRPE 390
Query: 399 AG--PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDL 456
A P + NL QM VC N L +LNSILDTSKVE+GKMQL E +F + ++L++ VD+
Sbjct: 391 AQSLPAPGIVENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMSDVLQESVDM 450
Query: 457 FHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACV 516
+ +R+GVEV+ DP D SVL+ + V GD +LKQIL NLL NA+KFT EGH+ +R
Sbjct: 451 ANVTGVRRGVEVIWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTHEGHVLLRGWA 510
Query: 517 KKP---SAIGNPS-LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVD 572
+P S +G PS + R S++ LF + D + + Q D N +EF FEV
Sbjct: 511 TRPIAGSGVGTPSRFAHPRRSAGGSLARLFRGRAE---DPDGQDHVQNDPNLVEFYFEVV 567
Query: 573 DTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
DTG GIPKEKR +VFENYVQV G+GGTGLGLGIVQS VRLMGG+I I DKE GERGTCF
Sbjct: 568 DTGIGIPKEKRMSVFENYVQVNNGQGGTGLGLGIVQSFVRLMGGEICIKDKEPGERGTCF 627
Query: 633 RFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLN 692
FNV L + E Q H ++ P ++ ++ R +
Sbjct: 628 AFNVLLKMSE-----------------------VQQTHQDIEEGPSVPLGTLNGSNYRAS 664
Query: 693 ILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSI 752
S +G H VL + E RRI Q +ME++G+ V V + E + +TL++++S S+
Sbjct: 665 AFQEASSFKGVHCVLYVHGSETRRILQTWMESMGVKVWLVRQAEFISATLEKVQSS--SV 722
Query: 753 HSPHSSLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRR---GAPSFILLVIDAT 809
+ + G D S KE+ T G KR G PS ILLVID +
Sbjct: 723 ATAAADCGGGD-------RCFSSKEMVNQLRNNT-----GPKRASLGGIPSGILLVIDVS 770
Query: 810 AGPFLELFNIVAEF-RRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGS 868
G E++ +A+ R Q CKVV L+ + S L+++ VL KP HGS
Sbjct: 771 GGALEEIYQDMAKLARTKQQAPCKVVLLEDIKTPSNELRRLKEQGCYL---VLRKPVHGS 827
Query: 869 RLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSE 928
RL+ ++ L R +AS DA + S P G + + G ++
Sbjct: 828 RLFTLLMTL---------RDLQAS-DAHAQSSQVGPEIAGNNSQQQGLPDV--------- 868
Query: 929 HSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGE 988
++P ++ +S E P Q + E+D
Sbjct: 869 -----VVP----CVQEAAASAEAP-----------------------CLVQKQKPEDD-- 894
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
KPL G +IL+A+D+ +L+ + L LGATV +G A+ L++ L +Q ++
Sbjct: 895 -----KPLAGMQILLAEDTFVLQTIQRKILNQLGATVTVAVDGSVAVNLLKQAL-EQANV 948
Query: 1049 GAPHI--LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI 1106
I LPY I MDC+MP M+GYEAT+ IREEE+R +H PIIALTAH + E+ K I
Sbjct: 949 SGEEIVPLPYHVIFMDCQMPNMDGYEATKLIREEEQRYGIHTPIIALTAHDTQEDLQKAI 1008
Query: 1107 EAGMDVHLGKPLNRDHLMEAIK 1128
+AGMD+HL KP+ ++EA++
Sbjct: 1009 DAGMDLHLTKPILGKKIVEAVR 1030
>gi|413942530|gb|AFW75179.1| hypothetical protein ZEAMMB73_171957 [Zea mays]
Length = 1059
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 372/1110 (33%), Positives = 543/1110 (48%), Gaps = 179/1110 (16%)
Query: 51 HPISSSATNLARVISSSLNNGTELSFSEIETKISYIGLDG-LFISYYVDGNQTLALYSNS 109
+P SS+ ++ A + + + ++SY G DG F Y + + AL+++S
Sbjct: 88 NPASSNESSPASISQVRPKMFMAFAMQPLLAQVSYAGADGHAFAFYRTEHGEARALFTDS 147
Query: 110 SFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGS 169
+ W Q VD TG+L G + + S + + N++ S
Sbjct: 148 --------------QKRWCTQAVDPATGRLVG----SAAVAASKDAALVASKNASPA--S 187
Query: 170 LGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFA-------GINLY---GGRL- 218
L GW++ + +A + G VS V + A G+N+Y G ++
Sbjct: 188 LRAGWARPDVRMLFFSAPVGDAAGVVSAAIAVHDVFEAAAARIGVQDGLNVYYAVGDKVA 247
Query: 219 SIATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSG---NGTLS 275
S AT + K L S+ +Q T T ++++ ++C + + T
Sbjct: 248 SAATTNYKPL--------------SLGYQYGTAEDTAEEKLS-FSRLTCAASAIDDATPE 292
Query: 276 IGKI--------HYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVG 327
+G++ YKA C+ F+V+GV+ L + ++ + L V+ +
Sbjct: 293 LGQLVPGGPKYRRYKAACTTFDVSGVQVALRLVLRPSIQGHMLQALCVSVVFLACVLVLA 352
Query: 328 VLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAG 387
+S V AA +EM L L +Q EA +QAE KS AFA+ASHDIR+AL+
Sbjct: 353 AAVSCALAVRALRWAAAREMALNVDLARQKEALRQAEFKSN----AFASASHDIRSALSA 408
Query: 388 ITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447
I GL+++ E + NL QM VC N L +LNS+LDTSKV AGKMQL E +F +
Sbjct: 409 IAGLVDMSRPEVQSVPGIMENLDQMGVCTNKLFDILNSVLDTSKVGAGKMQLEEAEFTMA 468
Query: 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE 507
++L++ VD+ + +++GVEVV DP D SVL+ + V GD +LKQIL NLL NA+KFT E
Sbjct: 469 DVLQESVDMANVTGVQRGVEVVWDPCDFSVLRCTAVIGDSKRLKQILDNLLGNALKFTDE 528
Query: 508 GHISVRACVKKP---SAIGNPS-LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDEN 563
GH+ +R +P S + PS RH S C F +A+ D + Q D N
Sbjct: 529 GHVVLRCWATRPIVGSNVRAPSRFMHPRHASGGSFGCFF----RAQEDPSHQDHLQNDPN 584
Query: 564 AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDK 623
+EF FEV DTG GIPKE R +VFENYVQV G+GGTGLGLGIVQS VRLMGG+I I DK
Sbjct: 585 LVEFYFEVVDTGIGIPKENRMSVFENYVQVNNGQGGTGLGLGIVQSFVRLMGGEISIKDK 644
Query: 624 ENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLS 683
E GERGTCF FNV L I E Q +++ G S PS +L+
Sbjct: 645 EPGERGTCFAFNVLLKISE-------MQQPQDIEEGPS---------------VPSGTLN 682
Query: 684 IRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743
+ + N +G H +L + E RRI Q +ME++G+ V V + + + STL+
Sbjct: 683 LASAFQEAN------NFKGVHCILYVRGYETRRIMQTWMESIGVKVWLVPQAKFIGSTLE 736
Query: 744 RLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRR---GAPS 800
+++S +I + + + SFKE T G +R G PS
Sbjct: 737 KVRSNSTTIIA---------MDYNNADRCFSFKEKVNQLRNNT-----GIRRVSLGGIPS 782
Query: 801 FILLVIDATAGPFLELFNIVAEFRR-DLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDD 859
IL+VID + G E+F +A+ R Q CKVV L + S + L+D D
Sbjct: 783 GILIVIDVSGGETEEIFQEMAKLARIKHQAPCKVVLLKDIKTPSNDLRKLKDLGCDL--- 839
Query: 860 VLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEI 919
VL KP HGSRL+ ++ L R + S SS+ P G S+
Sbjct: 840 VLRKPVHGSRLFTLLMTL---------RDLQVSNAQAQSSHVVGPGIAGNSQ-------- 882
Query: 920 QEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQ 979
+H D+ ++P ++ N+S E +S Q
Sbjct: 883 --------QHGLPDV---------------------VVP----CVQETNASTELASCLAQ 909
Query: 980 TEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR 1039
+ E+D KPL G +IL+A+D+++L+ + + L LGA V +NG A+ L+R
Sbjct: 910 EQKPEDD-------KPLSGMQILLAEDTLVLQTIQKKVLNQLGALVTVAQNGAVAVNLLR 962
Query: 1040 SGLNDQRDLGAPHI--LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
L +Q + I LPY ILMDC+MP M+GYEAT+ IREEE+R +H PIIALTAH
Sbjct: 963 EAL-EQANASKEDIVSLPYHVILMDCQMPEMDGYEATKLIREEEQRYGIHTPIIALTAHD 1021
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
E+ K +AGMD+HL KP+ + ++EAI
Sbjct: 1022 MEEDLQKAFDAGMDLHLTKPILQKKIVEAI 1051
>gi|357118508|ref|XP_003560996.1| PREDICTED: histidine kinase CKI1-like [Brachypodium distachyon]
Length = 1017
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 376/1130 (33%), Positives = 536/1130 (47%), Gaps = 183/1130 (16%)
Query: 45 SIATLLHPISSSATNLARVISSSLNNGTELSFSEIETKISYIGLDGLFISYYV--DGNQT 102
++A L PI+++ ++L+ V GT L F+ + + + SYY DG
Sbjct: 24 AVANALPPITTNQSSLSYV-------GTTL-FTAFAMQPAVAEM-----SYYAGPDGAAA 70
Query: 103 LALYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEA-IVTKPSSVSTSTW-FLKA 160
Y + P A G+ W+ Q D DTG+L G A V +P + T +
Sbjct: 71 FTYYRAADGQPRAM---FAGGRRRWFTQAADPDTGRLVGPASPVARPHHLPNYTARLITD 127
Query: 161 LNSTDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKP-----------ITNLFA 209
+ + SLG GW++ + + +A G G VS P+ IT+ F
Sbjct: 128 IKAGSPRASLGAGWARPGVRMVVFSAQAAG--GVVSADVPIDDVVLAGAAAAARITSGFR 185
Query: 210 GINLYGGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTS 269
+++Y A +D + G P + S L + + + + + V CT+
Sbjct: 186 LLHVY-----YALSDSR----GAPPS-----AGYRSLVLESRSHSAEEMEGLFEKVRCTA 231
Query: 270 GNGTLSIGKIH------YKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIV 323
++H Y C+ F V+GV L + ++ R LL V
Sbjct: 232 SAIDAPKLELHDVGPHTYSVACTNFNVSGVNLGIRLVLRNWHEAAMFRRMGIAVACLLCV 291
Query: 324 MTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRA 383
++++L R+A +E L A L + EA QQAERKSMNKS AFA+ASHDIR+
Sbjct: 292 TVALAVVALLVMGRSMRRSAAREAALGADLARHKEAVQQAERKSMNKSNAFASASHDIRS 351
Query: 384 ALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEED 443
ALA + GLI + EA L NL QM+VC N LL +LNSILD KVE+GKMQL E +
Sbjct: 352 ALAAVAGLIAVSRPEARANPVLADNLSQMDVCTNKLLDILNSILDMGKVESGKMQLEEVE 411
Query: 444 FDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVK 503
F + ++LE+ VD+ + M KG+EVV DP D SVL+ V GD ++KQIL NLL NA+K
Sbjct: 412 FTMAKVLEESVDMANVTGMAKGIEVVWDPCDFSVLRCGAVVGDCKRVKQILDNLLGNAMK 471
Query: 504 FTSEGHISVRACVKKP--SAIGNPSLSSSRHGFLQSIS-CLFYKNKKARGDLEAVNAA-- 558
FT EG++ +RA +P SA G + SS G ++ LF + KK G + N+A
Sbjct: 472 FTHEGNVVLRAWANRPIASAAGACADDSSCGGAPSRLAGGLFRRWKKDGGCADQQNSAGP 531
Query: 559 ---QRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMG 615
+ +++EF EV DTG GIP EKR++VFENYVQVKEG GGTGLGLGIVQS VRLMG
Sbjct: 532 KSLRNHPDSVEFYLEVVDTGVGIPMEKRQSVFENYVQVKEGHGGTGLGLGIVQSFVRLMG 591
Query: 616 GDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTV 675
G+I I KE GE GTCF NVF+ ++E A +G E+ +
Sbjct: 592 GEISIKYKEPGEAGTCFGLNVFMKLKERPA-----EGAVEI----------------MID 630
Query: 676 KAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRW 735
+ PS S S S + S +G H VLL+ E RRI Q +ME+LG+ V V
Sbjct: 631 QGPSSSSSDVYES---RLFREASCFKGLHCVLLVHGAETRRILQAWMESLGVKVWLVPGA 687
Query: 736 ERLHSTLKRLKSKFGSIHS------PHSSLGKSDLSSRSDSESASFKEVPLSAMEGTEHK 789
E L + + + + G + P L + +S A
Sbjct: 688 ELLAAAMDKAATGAGGDGAADLCFIPREMLPMARRNSSGRGGGGGNGNGHHHAFG----- 742
Query: 790 LQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFR---RDLQCNCKVVWLDKPTSRSINF 846
+L+V+D T G F + A +D + C++V L +++ +
Sbjct: 743 ------------LLVVVDVTDGGFDAICRGAAAMVPRIKDHKLPCRLVCLTD--AKTSSR 788
Query: 847 DGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYR 906
D L + D L KP HGSRL K++ + +D S YS
Sbjct: 789 DLLRFKQAVTCDLELRKPIHGSRLSKLLATM---------------KDLHQSYYSPSQVS 833
Query: 907 TGKSRSKAGRHEIQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKT 966
G A +++Q ++SSE + P PR +
Sbjct: 834 PGIKGKAAVVYQVQASAAASSEIEELPVEP---------------PRPKV---------- 868
Query: 967 GNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVE 1026
D ER KPL G ++L+A+DS ML+ + + L LGATVE
Sbjct: 869 -------------------DAER----KPLEGMRVLLAEDSRMLQAIQKKVLNLLGATVE 905
Query: 1027 ACENGEAALQLVRSGLND------QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREE 1080
E+G AL + +S L + Q GA LPYD + MDC MP MNGYEATR+IREE
Sbjct: 906 IAEDGSVALAMFKSALEEAIGASSQGSAGA-LALPYDVVFMDCLMPEMNGYEATRRIREE 964
Query: 1081 EKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
E R+ + PIIALTAH E +TI+AGMD+HL KP+ +++++EA+ +
Sbjct: 965 ESRHGIRTPIIALTAHSLEEGLQETIQAGMDLHLTKPILKENIVEAVSQI 1014
>gi|242034271|ref|XP_002464530.1| hypothetical protein SORBIDRAFT_01g020200 [Sorghum bicolor]
gi|241918384|gb|EER91528.1| hypothetical protein SORBIDRAFT_01g020200 [Sorghum bicolor]
Length = 755
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 302/799 (37%), Positives = 419/799 (52%), Gaps = 108/799 (13%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R+ +E L A+L++Q +A +QAERKS+NK+ AFA ASHDIR+ALA I+GL+++ VEA
Sbjct: 39 RSMAREASLRANLVRQNDALRQAERKSLNKTNAFAGASHDIRSALAAISGLVDVSRVEAQ 98
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
++ +L QM+VC N LLG+LNSILDTSKVE+GKMQL E +F+V +LE+ +D+ + V
Sbjct: 99 TNPQVLHHLDQMDVCTNKLLGILNSILDTSKVESGKMQLDESEFNVASVLEESMDMINIV 158
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP- 519
+ KG+EVV DP D S+LK V GD +LKQIL N+L N+VKFT +GH+ +RA +P
Sbjct: 159 GLSKGLEVVWDPCDLSILKCGNVVGDCRRLKQILDNVLGNSVKFTQQGHVVLRAWANRPV 218
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
A + SR G + CLF K ++ D + ++ Q D +++E FEVDDTG GIP
Sbjct: 219 VARSSVCCVPSRFG-CSNFLCLFIKGREHHEDCCSFSSIQNDPDSVELYFEVDDTGIGIP 277
Query: 580 KEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
KEKR+ VFE+YVQVKEG+GGTGLGLGIVQS VRLMGG+I I DK G+ GTC FNVF+
Sbjct: 278 KEKRELVFEDYVQVKEGQGGTGLGLGIVQSFVRLMGGEISIKDKGPGKAGTCIGFNVFMK 337
Query: 640 IREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSR 699
+ G + QH + S I ++ R +
Sbjct: 338 M----------------------GGIHEQQHDIEQGSSSSSQCCIGASAFR----EANTS 371
Query: 700 HEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSI--HSPHS 757
EG H +LL+ +E RRI Q ++ENLGI V V + + S L+ + S +P
Sbjct: 372 FEGGHCMLLVHGDETRRILQSWLENLGIKVWLVPQLDSFPSALENVCHVVSSASPRTPSD 431
Query: 758 SL-GKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLEL 816
S +D RS + +P+S + K G S +L+VIDA G +
Sbjct: 432 SFECHADFCFRSRDTVSEI--LPVSLKSSSSFKRSGAFGANNLSGVLVVIDAHYGKMENI 489
Query: 817 FNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKL 876
V Q CK+V L + S + L T D VL KP HGSRLY ++
Sbjct: 490 CTEVNFPEIKKQIPCKIVCLADANTSSGDLGRLRHHTC--CDLVLQKPIHGSRLYALLNT 547
Query: 877 LPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSRRDIMP 936
L + Q++ H S ++ +++P G
Sbjct: 548 LRDLQMAQARHH--PSHVNPENAETRNPENAG---------------------------- 577
Query: 937 NASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPL 996
S ++ SS P+RD +EE K L
Sbjct: 578 -TSAMVALAQSSSSEPKRD---------------------------DEE--------KSL 601
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG----APH 1052
G+++L+ +D++ L+ + + L LGA V E+G A+ + + L G A
Sbjct: 602 TGRRVLLVEDTLTLQTIGKKILYQLGADVAVAEDGAKAVSMFEAALAQANKAGSRMDAAA 661
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHI--SGEEADKTIEAG 1109
PYD ILMDC+MP+M+GYEATR+IRE E VH PIIALTAH E+ KTI AG
Sbjct: 662 STPYDVILMDCQMPVMDGYEATRRIREVESCYGVVHTPIIALTAHAMEDEEQWQKTIAAG 721
Query: 1110 MDVHLGKPLNRDHLMEAIK 1128
MD+HL KP+ R + EAI+
Sbjct: 722 MDLHLTKPMERRSIAEAIR 740
>gi|357168523|ref|XP_003581688.1| PREDICTED: histidine kinase CKI1-like [Brachypodium distachyon]
Length = 759
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 289/788 (36%), Positives = 410/788 (52%), Gaps = 109/788 (13%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +QAERKSMNKS AFA+ASHDIR+ALA G IE+ EA + NL M+VC
Sbjct: 51 EALRQAERKSMNKSNAFASASHDIRSALAAFAGYIEVSRPEAQTNPIVMHNLNAMDVCTK 110
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
L +LN+I+DTSKVE+GKMQL E +F++ + LE+ VD+ + + KGVEVV DP D SV
Sbjct: 111 KLFDILNTIMDTSKVESGKMQLEEVEFNMADALEESVDMVSVIGINKGVEVVWDPCDFSV 170
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP---SAIGNPSLSSSRHGF 534
L V GD + KQIL NLL NA+KFT EGH+ +RA +P S+I PS + R
Sbjct: 171 LLCENVVGDCRRFKQILDNLLGNALKFTQEGHVVLRAWANRPIARSSICTPSRFAHRRSG 230
Query: 535 LQSISCLFYKNK-KARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
K + N+ D +++EF FEV DTG GIP EKR+ VFENYVQV
Sbjct: 231 GGGGFWGSVFGKGRNCTKQNPCNSLWNDPDSVEFYFEVVDTGIGIPMEKREAVFENYVQV 290
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGE 653
KEG GGTGLGLGIVQS VRLMGG+I I DKE GE GTCF FNV L I E
Sbjct: 291 KEGHGGTGLGLGIVQSFVRLMGGEIGIKDKEPGETGTCFGFNVSLKISERQ--------- 341
Query: 654 KELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEE 713
D Q+ + S +S + R + + +G H +L++ E
Sbjct: 342 -----------DQQVADIEQGTYTSSSKMS--DSDIRALLFRETNCFKGGHCLLVVHEYE 388
Query: 714 RRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESA 773
RRI +ME++G+ V + R + + STL+R+ S S+ +SL S L +
Sbjct: 389 TRRILHTWMESIGMKVWIIPRVDLISSTLERIHST--SVSPSRASLSHSGLDCETTDWCF 446
Query: 774 SFKE-----VPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEF-RRDL 827
S KE +P++ + G P L+++D + ++ VA +
Sbjct: 447 SPKEMVNQVLPMALRNNN--NMGGNSGGDHPFGALVILDVSNERLDDISREVASLGKIKN 504
Query: 828 QCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKR 887
Q CK+V L + S +F LE D VL KP HGSRLY++++ +
Sbjct: 505 QAPCKLVCLADLKTSSEDFARLERSF----DLVLRKPMHGSRLYRLLRTM---------- 550
Query: 888 HGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSRRDIMPNASVLLKTGNS 947
RD S ++HPY+ S P AS G +
Sbjct: 551 -----RDIQVSP-AQHPYQACPSN------------------------PGASQKYFHGIA 580
Query: 948 SGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDS 1007
E P + S E + ++ +I+++ + L G ++L+A+D+
Sbjct: 581 IREQPDQ------------TAGSAETACLPQEPKIQDD--------RLLDGMRVLMAEDN 620
Query: 1008 MMLRRVAEINLRHLGATVEACENGEAALQLV-----RSGLNDQRDLGAPHILPYDYILMD 1062
+L+ + E L LGATVE +G A+ + R+G+++ G LPYD + MD
Sbjct: 621 QVLQIIQERMLSQLGATVEVAGDGSRAVDMFIDALERAGVSE----GHTVPLPYDLVFMD 676
Query: 1063 CEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDH 1122
C+MP+M+GYEAT++IREEE ++H PI+ALTAH E+ +TI+AGMD+HL KP+ R+
Sbjct: 677 CQMPLMDGYEATKRIREEETHYKIHTPIVALTAHALEEDLHQTIQAGMDLHLTKPIQREQ 736
Query: 1123 LMEAIKYL 1130
+++A+ +
Sbjct: 737 IVDALHQI 744
>gi|413932658|gb|AFW67209.1| hypothetical protein ZEAMMB73_026273 [Zea mays]
Length = 737
Score = 335 bits (858), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 234/539 (43%), Positives = 309/539 (57%), Gaps = 51/539 (9%)
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
EM L L +Q EA +QAERKSMNKS AFA+ASHDIR+AL+ I GL+++ EA +
Sbjct: 42 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAI 101
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
NL QM VC N L +LNSILDTSKVE+GKMQL E +F + ++L++ VD+ + +R+G
Sbjct: 102 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 161
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP---SAI 522
VEVV DP D SVL+ + V GD +LKQIL NLL NA+KFT EGH+ +R+ +P S +
Sbjct: 162 VEVVWDPCDFSVLRCATVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPIIGSNV 221
Query: 523 GNPS-LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
PS RHG + CLF + +K GD + V Q D N +EF FEV DTG GIP+E
Sbjct: 222 RAPSRFVHPRHGGGSFLGCLF-RARKGPGDQDHV---QNDPNLVEFYFEVVDTGIGIPQE 277
Query: 582 KRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR 641
KR +VFENYVQV G+GGTGLGLGIVQS VRLMGG+I I DKE GERGTCF FNV L I
Sbjct: 278 KRMSVFENYVQVNNGQGGTGLGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLLKIS 337
Query: 642 EASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHE 701
E Q +++ G S DT +N ++ S S +
Sbjct: 338 E-------VQQPQDIEEGPSVPLDT----LNRSIYIASA-------------FQEASNFK 373
Query: 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGK 761
G H VL + E RRI + +ME++ + V V + E + STL++++S S + + G
Sbjct: 374 GVHCVLYVHGYETRRILKTWMESIEVKVWLVPQAEFIGSTLEKVQS--NSTATATAECGS 431
Query: 762 SD--LSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNI 819
+D SS+ P A+ G G PS IL+VID + G E+
Sbjct: 432 ADRCFSSKEMVNLLRNNSSPRRAILG-----------GIPSGILVVIDVSGGETEEICQE 480
Query: 820 VAEFRR-DLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLL 877
+A+ R Q CKVV L+ + S + L+D D VL KP HGSR + ++ L
Sbjct: 481 MAKLARIKHQAPCKVVLLEDIKTPSNDLRRLKDMGCDL---VLRKPVHGSRQFTLLMTL 536
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 93/137 (67%), Gaps = 3/137 (2%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
KPL G +IL+A+D+++L+ + + LGA V +NG A+ L+R L +Q + I
Sbjct: 595 KPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGAMAVNLLREAL-EQANASEEDI 653
Query: 1054 --LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
LPY I MDC+MP M+GYEAT+ IREEE+R +H PIIALTAH E+ K I+AGMD
Sbjct: 654 VSLPYHVIFMDCQMPGMDGYEATKLIREEEQRYGIHTPIIALTAHDMEEDLQKAIDAGMD 713
Query: 1112 VHLGKPLNRDHLMEAIK 1128
+HL KP++R +++A++
Sbjct: 714 LHLAKPISRKKIVDAVR 730
>gi|55771375|dbj|BAD72542.1| putative histidine kinase 1 [Oryza sativa Japonica Group]
gi|118790664|tpd|FAA00247.1| TPA: histidine kinase [Oryza sativa Japonica Group]
gi|125554320|gb|EAY99925.1| hypothetical protein OsI_21926 [Oryza sativa Indica Group]
Length = 1048
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 233/631 (36%), Positives = 339/631 (53%), Gaps = 60/631 (9%)
Query: 281 YKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSA 340
Y+ C+ F+++GV+ + + + + +V + R + + ++ +
Sbjct: 303 YRFACTNFDISGVQMGFRVVLRKSAMVGVFRRGGVTMVAVACAAAAAATVACVLMARALR 362
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
RA +E L A L + +A +QAERKSMNKS AFA+ASHDIR+ALA + GL+E+ EA
Sbjct: 363 RAVAREAALGADLARHRDALRQAERKSMNKSNAFASASHDIRSALAAVAGLVEVSRPEAN 422
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
P + NL QM +C N LL +LNSILDT+KVE+GK+QL E +F++ ++LE+ VD+ + V
Sbjct: 423 PN--IVDNLNQMELCTNKLLDILNSILDTTKVESGKVQLEEVEFNMADVLEESVDMANVV 480
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
+ KG+EV+ DP D SV+K + GD + KQIL NLL NA+KFT EGH+ +RA +P
Sbjct: 481 GITKGIEVIWDPCDFSVMKCDNIIGDSKRFKQILDNLLGNAMKFTQEGHVILRAWANRPI 540
Query: 521 A---IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKG 577
A IG PS + R + F+ K+ R + N Q D N++EF FEV DTG G
Sbjct: 541 ARGSIGAPSRFAYR-SLENNFFSFFFGAKEDRVSQNSFNPLQNDPNSVEFYFEVVDTGIG 599
Query: 578 IPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
IPKEKR++VFENYVQVKEG GGTGLGLGIVQS VRLMGG+I I +KE GERGTCF FNV
Sbjct: 600 IPKEKRESVFENYVQVKEGHGGTGLGLGIVQSFVRLMGGEISIKEKEPGERGTCFGFNVL 659
Query: 638 LAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPG 697
L N E+++ G S + + R ++
Sbjct: 660 L------KTSGNQAAEEDIEEGPSTVSELDI---------------------RASVFRET 692
Query: 698 SRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHS 757
+ +G H +L + +E RR+ Q +ME++G+ V V E + STL++ +S
Sbjct: 693 NCFKGWHCILFVHGDETRRVLQAWMESIGMKVWMVPGVESISSTLEKARSSRDDCDVDRC 752
Query: 758 SLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELF 817
K +S + + + + A EH P +LL++D + G +L
Sbjct: 753 FSSKEMVSQVLPT---TLRNNNIMARNLGEHH---------PLGMLLIVDVSNG---QLE 797
Query: 818 NIVAEFRRDL-----QCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYK 872
NI + RD Q CK V L + +F E+ + D +L KP HGSRLY
Sbjct: 798 NIQRQ-ARDFTQMRSQVPCKFVCLTDLRTSYKDFRRFEEMSCDL---ILRKPVHGSRLYS 853
Query: 873 VIKLLPEFGGVQSKRHGKASRDAGSSSYSKH 903
++ L + VQS ++S + ++H
Sbjct: 854 LLMTLRD---VQSSPMHRSSLVGHENYVTRH 881
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 92/145 (63%), Gaps = 3/145 (2%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+ G +++ +PL G +L+ +D+++L+ + L LGA VE +G A+ + R + +
Sbjct: 897 DQGLKTEEDRPLDGMHVLLVEDTLVLQTIQRKMLNQLGAIVELAGDGAKAVDMFRDAI-E 955
Query: 1045 QRDLGAPHI--LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEA 1102
+ + H LPYD I MDC+MP M+GYEATR+IREEE R + PIIALTAH ++
Sbjct: 956 RASVSEEHSVPLPYDVIFMDCQMPRMDGYEATRRIREEESRYGIRTPIIALTAHSMEDDL 1015
Query: 1103 DKTIEAGMDVHLGKPLNRDHLMEAI 1127
K I+ GMD+H+ KP+ R ++EA+
Sbjct: 1016 QKAIDVGMDLHMTKPIERRRIVEAV 1040
>gi|125596271|gb|EAZ36051.1| hypothetical protein OsJ_20358 [Oryza sativa Japonica Group]
Length = 1024
Score = 327 bits (837), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 233/631 (36%), Positives = 339/631 (53%), Gaps = 60/631 (9%)
Query: 281 YKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSA 340
Y+ C+ F+++GV+ + + + + +V + R + + ++ +
Sbjct: 279 YRFACTNFDISGVQMGFRVVLRKSAMVGVFRRGGVTMVAVACAAAAAATVACVLMARALR 338
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
RA +E L A L + +A +QAERKSMNKS AFA+ASHDIR+ALA + GL+E+ EA
Sbjct: 339 RAVAREAALGADLARHRDALRQAERKSMNKSNAFASASHDIRSALAAVAGLVEVSRPEAN 398
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
P + NL QM +C N LL +LNSILDT+KVE+GK+QL E +F++ ++LE+ VD+ + V
Sbjct: 399 PN--IVDNLNQMELCTNKLLDILNSILDTTKVESGKVQLEEVEFNMADVLEESVDMANVV 456
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
+ KG+EV+ DP D SV+K + GD + KQIL NLL NA+KFT EGH+ +RA +P
Sbjct: 457 GITKGIEVIWDPCDFSVMKCDNIIGDSKRFKQILDNLLGNAMKFTQEGHVILRAWANRPI 516
Query: 521 A---IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKG 577
A IG PS + R + F+ K+ R + N Q D N++EF FEV DTG G
Sbjct: 517 ARGSIGAPSRFAYR-SLENNFFSFFFGAKEDRVSQNSFNPLQNDPNSVEFYFEVVDTGIG 575
Query: 578 IPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
IPKEKR++VFENYVQVKEG GGTGLGLGIVQS VRLMGG+I I +KE GERGTCF FNV
Sbjct: 576 IPKEKRESVFENYVQVKEGHGGTGLGLGIVQSFVRLMGGEISIKEKEPGERGTCFGFNVL 635
Query: 638 LAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPG 697
L N E+++ G S + + R ++
Sbjct: 636 L------KTSGNQAAEEDIEEGPSTVSELDI---------------------RASVFRET 668
Query: 698 SRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHS 757
+ +G H +L + +E RR+ Q +ME++G+ V V E + STL++ +S
Sbjct: 669 NCFKGWHCILFVHGDETRRVLQAWMESIGMKVWMVPGVESISSTLEKARSSRDDCDVDRC 728
Query: 758 SLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELF 817
K +S + + + + A EH P +LL++D + G +L
Sbjct: 729 FSSKEMVSQVLPT---TLRNNNIMARNLGEHH---------PLGMLLIVDVSNG---QLE 773
Query: 818 NIVAEFRRDL-----QCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYK 872
NI + RD Q CK V L + +F E+ + D +L KP HGSRLY
Sbjct: 774 NIQRQ-ARDFTQMRSQVPCKFVCLTDLRTSYKDFRRFEEMSCDL---ILRKPVHGSRLYS 829
Query: 873 VIKLLPEFGGVQSKRHGKASRDAGSSSYSKH 903
++ L + VQS ++S + ++H
Sbjct: 830 LLMTLRD---VQSSPMHRSSLVGHENYVTRH 857
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 92/145 (63%), Gaps = 3/145 (2%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+ G +++ +PL G +L+ +D+++L+ + L LGA VE +G A+ + R + +
Sbjct: 873 DQGLKTEEDRPLDGMHVLLVEDTLVLQTIQRKMLNQLGAIVELAGDGAKAVDMFRDAI-E 931
Query: 1045 QRDLGAPHI--LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEA 1102
+ + H LPYD I MDC+MP M+GYEATR+IREEE R + PIIALTAH ++
Sbjct: 932 RASVSEEHSVPLPYDVIFMDCQMPRMDGYEATRRIREEESRYGIRTPIIALTAHSMEDDL 991
Query: 1103 DKTIEAGMDVHLGKPLNRDHLMEAI 1127
K I+ GMD+H+ KP+ R ++EA+
Sbjct: 992 QKAIDVGMDLHMTKPIERRRIVEAV 1016
>gi|413932654|gb|AFW67205.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 875
Score = 323 bits (828), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 230/542 (42%), Positives = 307/542 (56%), Gaps = 57/542 (10%)
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
EM L L +Q EA +QAERKSMNKS AFA+ASHDIR+AL+ I GL+++ EA +
Sbjct: 43 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAV 102
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
NL QM VC N L +LNSILDTSKVE+GKMQL E +F + ++L++ VD+ + +R+G
Sbjct: 103 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 162
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP---SAI 522
VEVV DP D SVL+ + V GD +LKQIL NLL NA+KFT EGH+ +R+ +P S +
Sbjct: 163 VEVVWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPITGSNV 222
Query: 523 GNPS-LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
PS RHG + ++ +K GD + V Q D N +EF FEV DTG GIP+E
Sbjct: 223 RAPSRFVHPRHGGGGFLG-CLFRARKRPGDQDHV---QNDPNLVEFYFEVVDTGIGIPQE 278
Query: 582 KRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR 641
K+ +VFENYVQV G+GGTGLGLGIVQS VRLMGG+I I DKE GERGTCF FNV L I
Sbjct: 279 KKMSVFENYVQVNNGQGGTGLGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLLRIS 338
Query: 642 EASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSP---GS 698
E + +G PS+ + T + ++I S S
Sbjct: 339 EVQQPQDIEEG---------------------------PSVPLGTLNRSISIASAFQEAS 371
Query: 699 RHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSS 758
+G H VL + E RRI Q +ME++ + V V + E + STL++++S S + +
Sbjct: 372 NFKGVHCVLYVHGYETRRILQTWMESIEVKVWLVPQAEFIGSTLEKVQS--NSTATATAE 429
Query: 759 LGKSD--LSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLEL 816
G +D SS+ P A+ G G PS IL+VID + G E+
Sbjct: 430 CGSADRCFSSKEMVNLLRNNSSPRRAILG-----------GIPSGILVVIDVSGGETEEI 478
Query: 817 FNIVAEFRR-DLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIK 875
+A+ R Q CKVV L+ + S + L+D D VL KP HGSR + ++
Sbjct: 479 CQEMAKLSRIKHQAPCKVVLLEDIKTPSNDLRRLKDMGCDL---VLRKPVHGSRQFTLLM 535
Query: 876 LL 877
L
Sbjct: 536 TL 537
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 93/137 (67%), Gaps = 3/137 (2%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
KPL G +IL+A+D+++L+ + + LGA V +NG A+ L+R L +Q + I
Sbjct: 593 KPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGTMAVNLLREAL-EQANASEEDI 651
Query: 1054 --LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
LPY I MDC+MP M+GYEAT+ IREEE+R +H PIIALTAH E+ K I+AGMD
Sbjct: 652 VSLPYHVIFMDCQMPGMDGYEATKLIREEEQRYGIHAPIIALTAHDMEEDLQKAIDAGMD 711
Query: 1112 VHLGKPLNRDHLMEAIK 1128
+HL KP++R +++A++
Sbjct: 712 LHLAKPISRKKIVDAVR 728
>gi|413932650|gb|AFW67201.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 1021
Score = 323 bits (827), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 227/541 (41%), Positives = 303/541 (56%), Gaps = 55/541 (10%)
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
EM L L +Q EA +QAERKSMNKS AFA+ASHDIR+AL+ I GL+++ EA +
Sbjct: 43 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAV 102
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
NL QM VC N L +LNSILDTSKVE+GKMQL E +F + ++L++ VD+ + +R+G
Sbjct: 103 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 162
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP---SAI 522
VEVV DP D SVL+ + V GD +LKQIL NLL NA+KFT EGH+ +R+ +P S +
Sbjct: 163 VEVVWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPITGSNV 222
Query: 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK 582
PS ++ +K GD + V Q D N +EF FEV DTG GIP+EK
Sbjct: 223 RAPSRFVHPRHGGGGFLGCLFRARKRPGDQDHV---QNDPNLVEFYFEVVDTGIGIPQEK 279
Query: 583 RKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
+ +VFENYVQV G+GGTGLGLGIVQS VRLMGG+I I DKE GERGTCF FNV L I E
Sbjct: 280 KMSVFENYVQVNNGQGGTGLGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLLRISE 339
Query: 643 ASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSP---GSR 699
+ +G PS+ + T + ++I S S
Sbjct: 340 VQQPQDIEEG---------------------------PSVPLGTLNRSISIASAFQEASN 372
Query: 700 HEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSL 759
+G H VL + E RRI Q +ME++ + V V + E + STL++++S S + +
Sbjct: 373 FKGVHCVLYVHGYETRRILQTWMESIEVKVWLVPQAEFIGSTLEKVQS--NSTATATAEC 430
Query: 760 GKSD--LSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELF 817
G +D SS+ P A+ G G PS IL+VID + G E+
Sbjct: 431 GSADRCFSSKEMVNLLRNNSSPRRAILG-----------GIPSGILVVIDVSGGETEEIC 479
Query: 818 NIVAEFRR-DLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKL 876
+A+ R Q CKVV L+ + S + L+D D VL KP HGSR + ++
Sbjct: 480 QEMAKLSRIKHQAPCKVVLLEDIKTPSNDLRRLKDMGCDL---VLRKPVHGSRQFTLLMT 536
Query: 877 L 877
L
Sbjct: 537 L 537
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 93/137 (67%), Gaps = 3/137 (2%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
KPL G +IL+A+D+++L+ + + LGA V +NG A+ L+R L +Q + I
Sbjct: 593 KPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGTMAVNLLREAL-EQANASEEDI 651
Query: 1054 --LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
LPY I MDC+MP M+GYEAT+ IREEE+R +H PIIALTAH E+ K I+AGMD
Sbjct: 652 VSLPYHVIFMDCQMPGMDGYEATKLIREEEQRYGIHAPIIALTAHDMEEDLQKAIDAGMD 711
Query: 1112 VHLGKPLNRDHLMEAIK 1128
+HL KP++R +++A++
Sbjct: 712 LHLAKPISRKKIVDAVR 728
>gi|413932651|gb|AFW67202.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 990
Score = 323 bits (827), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 230/542 (42%), Positives = 307/542 (56%), Gaps = 57/542 (10%)
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
EM L L +Q EA +QAERKSMNKS AFA+ASHDIR+AL+ I GL+++ EA +
Sbjct: 43 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAV 102
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
NL QM VC N L +LNSILDTSKVE+GKMQL E +F + ++L++ VD+ + +R+G
Sbjct: 103 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 162
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP---SAI 522
VEVV DP D SVL+ + V GD +LKQIL NLL NA+KFT EGH+ +R+ +P S +
Sbjct: 163 VEVVWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPITGSNV 222
Query: 523 GNPS-LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
PS RHG + ++ +K GD + V Q D N +EF FEV DTG GIP+E
Sbjct: 223 RAPSRFVHPRHGGGGFLG-CLFRARKRPGDQDHV---QNDPNLVEFYFEVVDTGIGIPQE 278
Query: 582 KRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR 641
K+ +VFENYVQV G+GGTGLGLGIVQS VRLMGG+I I DKE GERGTCF FNV L I
Sbjct: 279 KKMSVFENYVQVNNGQGGTGLGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLLRIS 338
Query: 642 EASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSP---GS 698
E + +G PS+ + T + ++I S S
Sbjct: 339 EVQQPQDIEEG---------------------------PSVPLGTLNRSISIASAFQEAS 371
Query: 699 RHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSS 758
+G H VL + E RRI Q +ME++ + V V + E + STL++++S S + +
Sbjct: 372 NFKGVHCVLYVHGYETRRILQTWMESIEVKVWLVPQAEFIGSTLEKVQS--NSTATATAE 429
Query: 759 LGKSD--LSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLEL 816
G +D SS+ P A+ G G PS IL+VID + G E+
Sbjct: 430 CGSADRCFSSKEMVNLLRNNSSPRRAILG-----------GIPSGILVVIDVSGGETEEI 478
Query: 817 FNIVAEFRR-DLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIK 875
+A+ R Q CKVV L+ + S + L+D D VL KP HGSR + ++
Sbjct: 479 CQEMAKLSRIKHQAPCKVVLLEDIKTPSNDLRRLKDMGCDL---VLRKPVHGSRQFTLLM 535
Query: 876 LL 877
L
Sbjct: 536 TL 537
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 93/137 (67%), Gaps = 3/137 (2%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
KPL G +IL+A+D+++L+ + + LGA V +NG A+ L+R L +Q + I
Sbjct: 593 KPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGTMAVNLLREAL-EQANASEEDI 651
Query: 1054 --LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
LPY I MDC+MP M+GYEAT+ IREEE+R +H PIIALTAH E+ K I+AGMD
Sbjct: 652 VSLPYHVIFMDCQMPGMDGYEATKLIREEEQRYGIHAPIIALTAHDMEEDLQKAIDAGMD 711
Query: 1112 VHLGKPLNRDHLMEAIK 1128
+HL KP++R +++A++
Sbjct: 712 LHLAKPISRKKIVDAVR 728
>gi|413932652|gb|AFW67203.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
gi|413932653|gb|AFW67204.1| hypothetical protein ZEAMMB73_308871 [Zea mays]
Length = 886
Score = 322 bits (826), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 230/542 (42%), Positives = 307/542 (56%), Gaps = 57/542 (10%)
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
EM L L +Q EA +QAERKSMNKS AFA+ASHDIR+AL+ I GL+++ EA +
Sbjct: 43 EMALNVDLARQKEALRQAERKSMNKSNAFASASHDIRSALSAIAGLVDMSRQEAQSLPAV 102
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
NL QM VC N L +LNSILDTSKVE+GKMQL E +F + ++L++ VD+ + +R+G
Sbjct: 103 MENLDQMGVCTNKLFDILNSILDTSKVESGKMQLEEAEFSMADVLQESVDMAYVTGVRRG 162
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP---SAI 522
VEVV DP D SVL+ + V GD +LKQIL NLL NA+KFT EGH+ +R+ +P S +
Sbjct: 163 VEVVWDPCDFSVLRCAAVLGDSKRLKQILDNLLGNALKFTDEGHVVLRSWATRPITGSNV 222
Query: 523 GNPS-LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
PS RHG + ++ +K GD + V Q D N +EF FEV DTG GIP+E
Sbjct: 223 RAPSRFVHPRHGGGGFLG-CLFRARKRPGDQDHV---QNDPNLVEFYFEVVDTGIGIPQE 278
Query: 582 KRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR 641
K+ +VFENYVQV G+GGTGLGLGIVQS VRLMGG+I I DKE GERGTCF FNV L I
Sbjct: 279 KKMSVFENYVQVNNGQGGTGLGLGIVQSFVRLMGGEISIKDKEPGERGTCFAFNVLLRIS 338
Query: 642 EASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSP---GS 698
E + +G PS+ + T + ++I S S
Sbjct: 339 EVQQPQDIEEG---------------------------PSVPLGTLNRSISIASAFQEAS 371
Query: 699 RHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSS 758
+G H VL + E RRI Q +ME++ + V V + E + STL++++S S + +
Sbjct: 372 NFKGVHCVLYVHGYETRRILQTWMESIEVKVWLVPQAEFIGSTLEKVQS--NSTATATAE 429
Query: 759 LGKSD--LSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLEL 816
G +D SS+ P A+ G G PS IL+VID + G E+
Sbjct: 430 CGSADRCFSSKEMVNLLRNNSSPRRAILG-----------GIPSGILVVIDVSGGETEEI 478
Query: 817 FNIVAEFRR-DLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIK 875
+A+ R Q CKVV L+ + S + L+D D VL KP HGSR + ++
Sbjct: 479 CQEMAKLSRIKHQAPCKVVLLEDIKTPSNDLRRLKDMGCDL---VLRKPVHGSRQFTLLM 535
Query: 876 LL 877
L
Sbjct: 536 TL 537
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 93/137 (67%), Gaps = 3/137 (2%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
KPL G +IL+A+D+++L+ + + LGA V +NG A+ L+R L +Q + I
Sbjct: 593 KPLAGMRILLAEDNLVLQSIQRKIMNQLGAFVTVAQNGTMAVNLLREAL-EQANASEEDI 651
Query: 1054 --LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
LPY I MDC+MP M+GYEAT+ IREEE+R +H PIIALTAH E+ K I+AGMD
Sbjct: 652 VSLPYHVIFMDCQMPGMDGYEATKLIREEEQRYGIHAPIIALTAHDMEEDLQKAIDAGMD 711
Query: 1112 VHLGKPLNRDHLMEAIK 1128
+HL KP++R +++A++
Sbjct: 712 LHLAKPISRKKIVDAVR 728
>gi|357442267|ref|XP_003591411.1| Hybrid signal transduction histidine kinase I [Medicago truncatula]
gi|355480459|gb|AES61662.1| Hybrid signal transduction histidine kinase I [Medicago truncatula]
Length = 486
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 216/526 (41%), Positives = 297/526 (56%), Gaps = 78/526 (14%)
Query: 611 VRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQH 670
VRLM GDI IVDKE G+RGTCF+FNV L + E N T G +A +Q
Sbjct: 27 VRLMHGDIGIVDKEVGKRGTCFKFNVLLTLCE-----NETVN---YEYGSTAGDKSQTLE 78
Query: 671 MNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVS 730
LT++ S SI + SP+L++ SP R E SHV+L I +EERRR +Q F+E+LGI V
Sbjct: 79 KKLTIRTASSGSSICSLSPKLHV-SPSQRPEPSHVILYITDEERRRTSQLFIESLGIKVK 137
Query: 731 AVSRWERLHSTLKRLKSKFGS-IHSPHSSLGKSDLSSRSDSESASFKEVPLSAME-GTEH 788
V L TLK++K + G + S S + S+ + VP AM+ G E+
Sbjct: 138 VVKSRNHLVHTLKKIKKEKGDHLSDQSSPESSEMSSRCTSYSSSCSRRVPFKAMDHGNEY 197
Query: 789 KLQGYKRR--GAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINF 846
+K+ APSF+L++IDA AGPF +L IV+ F++DL KVVWL+KP S+++
Sbjct: 198 LSSMFKKNNGAAPSFVLIIIDANAGPFSKLCKIVSNFKKDLLNPSKVVWLEKPFESSVDY 257
Query: 847 DGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYR 906
+ +D +D+V+ KPFHGSRL++VIKLLPEFGG
Sbjct: 258 -----QAIDQDDNVISKPFHGSRLFQVIKLLPEFGG------------------------ 288
Query: 907 TGKSRSKAGRHEIQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKT 966
+ S S R+E++ + ++ E SV L G +G ++ +K
Sbjct: 289 SWISNSSKPRNELRSQEPTNDE----------SVCLSVGQ-CWKGTQKS-------YVKM 330
Query: 967 GNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGA-TV 1025
G +GS Q EIEE GE S + PL GKK LV DDS MLR++ LR LG T+
Sbjct: 331 GR---KGSVH--QGEIEESGGESSNPE-PLSGKKFLVVDDSPMLRKICMATLRSLGVTTI 384
Query: 1026 EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQ 1085
+ CENGE A++ V+ GL +D P PYDYILMDC+MP+ +G+EATR+IRE EK+
Sbjct: 385 DQCENGEEAVRTVQEGLT--KDFTNP---PYDYILMDCQMPVKDGFEATREIREMEKQYG 439
Query: 1086 VHIPIIALTAHISGEEADK-TIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+HI IIAL+A I DK T E GMD H+ KP+ ++HL++AI Y+
Sbjct: 440 LHISIIALSAEI-----DKLTTETGMDFHITKPIKKEHLLKAITYI 480
>gi|297836494|ref|XP_002886129.1| hypothetical protein ARALYDRAFT_480680 [Arabidopsis lyrata subsp.
lyrata]
gi|297331969|gb|EFH62388.1| hypothetical protein ARALYDRAFT_480680 [Arabidopsis lyrata subsp.
lyrata]
Length = 1194
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 285/1064 (26%), Positives = 459/1064 (43%), Gaps = 181/1064 (17%)
Query: 127 WYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTA 186
WY+Q +D TG+ G+ + P + L+ DG S SK D+ L+ A
Sbjct: 234 WYQQQLDPVTGEKLGKPLKIPPDDLINIAGILQV---PDGEASWHVTVSKYMDSPLLSAA 290
Query: 187 GINGTRGAVSLGFPVKPITNLFAG-------INLYGGRLSIATNDGKVLVQGIPNTRMTI 239
S+ V T L++ ++++GG + + + +G +L
Sbjct: 291 LPVFDASNKSIVDVVGVTTALYSVGQLMRDLVDVHGGHIYLTSQEGYLLAT--------- 341
Query: 240 VNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVK----- 294
S + L+ NT + M + + G + K + + VK
Sbjct: 342 ---STNGPLLKNTTNGPKLMKAIDSEEWVIRAGAQWLEKTYGSKRPQEVHAENVKLGNQR 398
Query: 295 ----SVY----------ALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSA 340
S Y + +PRK ++ V + + LI+LI +V + +
Sbjct: 399 YYIDSFYLNLKRLPIIGVVIIPRKFIMGKVDERAFKTLIILISASVCIFFIGCVCILILT 458
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
KEM L A LI+Q++A ++AE S KS AN SH++R +A + GL+++ +
Sbjct: 459 NGVSKEMKLRAELIRQLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDC 518
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
+E + Q+ C+ LL LLN+ILD SKVE+GK+ L E +FD+G LE +VD+F
Sbjct: 519 LSNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQ 578
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
+ VE VLD SD + V+GD +L QI +NL+SN++KFT+ GHI +R + +
Sbjct: 579 CINHNVETVLDLSDDMP---ALVRGDSARLVQIFANLISNSIKFTTTGHIILRGWCENIN 635
Query: 521 AIGNP-SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
++ + L+ R + + + K + R L+ + ++ N M FEVDDTG GI
Sbjct: 636 SLHDEMRLTVDRK---KPWAPMKTKLVQHRNHLQ---KSCKNANKMVLWFEVDDTGCGIE 689
Query: 580 KEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
K +VFE++ Q GGTGLGL IV++LV MGG+I++V K NG GT R
Sbjct: 690 SSKWDSVFESFEQADPSTTRTHGGTGLGLCIVRNLVNKMGGEIKVVQK-NG-LGTLMRLY 747
Query: 636 VFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILS 695
+ L+ E + D N Q
Sbjct: 748 LILSTPETA--DQNIQ-------------------------------------------- 761
Query: 696 PGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSP 755
P G V+L + R I K++ GI S W L ++ L
Sbjct: 762 PDFSKYGLVVLLSMYGSTARMITSKWLRKHGIATVEASDWNELTQIIRDLL--------- 812
Query: 756 HSSLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLE 815
+G D S S + A LS +E ++ + + V+D T + E
Sbjct: 813 --EMGSRDNSFDSQNNIADSLRAELSNIEEIKNPVFVVVVD------IGVLDLTTDIWKE 864
Query: 816 LFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGL--EDETMDPNDDVLLKPFHGSRLYKV 873
N + F K WL K + +I L + M N KP + +++ ++
Sbjct: 865 QLNYLDRFSN----KAKFAWLLKHDTSNIVKTELRRKGHVMMVN-----KPLYKAKMIQI 915
Query: 874 IKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSRRD 933
++ + +++++ R+ G+ S H + +S +H +
Sbjct: 916 LEAV-----IKNRKRCNGLRNRGNGSDESHDFLEIDPTQFDTCSSDDSSETSGEKHIDKS 970
Query: 934 IMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSS-RYKQTEIEEEDGE---- 988
+ P S+ P ++ N L+ NS+ + +S Q +EEED +
Sbjct: 971 VQP----------STLHSP---VLKN--YLIDANNSNDDSTSASTTQKNLEEEDWKDRLY 1015
Query: 989 -----RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ-LVRSGL 1042
+ QK L G +IL+A+D+ +L+RVA I L +GATV A +G+ A+ L +
Sbjct: 1016 SGIALDGKNQKSLEGIRILLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYRSI 1075
Query: 1043 NDQRDLGAP-------------------HILPYDYILMDCEMPIMNGYEATRKIREEEKR 1083
N Q G P + PYD ILMDC+MP M+GY+AT+ IR E
Sbjct: 1076 NVQDPTGEPTSSEEETANNSINPQSSLRNSSPYDLILMDCQMPKMDGYDATKAIRRAEIG 1135
Query: 1084 NQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++HIPI+ALTAH + K +E GMD +L KP++R ++ I
Sbjct: 1136 TELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTI 1179
>gi|357517985|ref|XP_003629281.1| Histidine kinase [Medicago truncatula]
gi|355523303|gb|AET03757.1| Histidine kinase [Medicago truncatula]
Length = 1173
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 295/1110 (26%), Positives = 483/1110 (43%), Gaps = 193/1110 (17%)
Query: 89 DGLFISYYVD--GNQTLALYSNSSFSPNPNGFPIAKGKYT-----WYKQPVDRDTGKLYG 141
+G +++ D N +Y++ S+ N F + ++ WY++ +D G+ G
Sbjct: 172 NGFVQAFHRDLKDNNIFYIYTDLSYHET-NSFAAHEDTHSNKSAIWYREQLDPVNGEKIG 230
Query: 142 EAIVTKP-SSVS----------TSTWFLKALNSTDG--LGSLGTGWSKARDALFLNTAGI 188
+A+ P S+S ++W + TD L + W + ++ A +
Sbjct: 231 KAMKIAPEDSISIAGLSQVPDGVASWHVSVGKFTDSPLLSAALPVWDSSNKSI---VAVV 287
Query: 189 NGTRGAVSLGFPVKPITNLFAGINLY-----GGRLSIATNDGKVLVQGI--PNTRMTIV- 240
T S+G +K + + +G ++Y G L+ +TND +L P +M +
Sbjct: 288 GVTTALYSVGQLMKELVDKHSG-HMYLTSQEGYLLATSTND-PLLTNSTKKPKLKMAVDC 345
Query: 241 -NDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKS--VY 297
N+ I + KT P V N L H + Y F + K V
Sbjct: 346 DNEVIREGAMWLKKTYENNFPPSHEVH--EENARLG----HQQYYIDSFFLILKKLPLVG 399
Query: 298 ALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQM 357
+ +PRK ++ + + L++LI ++ +++ + KEM+L A LI +
Sbjct: 400 VIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMNLRAELISHL 459
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA ++AE S KS AN SH++R +A + GL+++ + +E + Q+ C+
Sbjct: 460 EARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDRLTNEQCATVTQIRKCST 519
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL LLN+ILD SKVE+GK+ L E +FD G LE +VD+F + VE++LD SD
Sbjct: 520 ALLHLLNNILDISKVESGKLVLEEAEFDFGRELEGLVDMFSVQCINHNVEIILDLSDDMP 579
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG---NPSLSSSRHGF 534
V+GD ++ QI +NL++N++KFT GHI +R + P++ G N +L G
Sbjct: 580 ---KLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSYGDSENFTLEQKPFGC 636
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+ ++N + A +N M FEVDDTG GI K +VFE++ Q
Sbjct: 637 SRKTKMKQHENHSKK--------ASNIDNKMILWFEVDDTGCGIDPSKWDSVFESFEQAD 688
Query: 595 EG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
GGTGLGL IV+SLV MGG+I+IV KE GT R
Sbjct: 689 LSTTRLHGGTGLGLCIVRSLVNKMGGEIKIVKKEGP--GTLMRL---------------- 730
Query: 651 QGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIA 710
+M LT + + + N++ V+L +
Sbjct: 731 -------------------YMQLTAPVDATEQHCQVDFANNNLM----------VLLALH 761
Query: 711 NEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDS 770
R I K+++ G+ S W L LK L S H+ +D +
Sbjct: 762 GNMSRLITSKWLQKNGVLTMEASEWNGLTQILKELFEAKTSTHN-------NDFDTH--- 811
Query: 771 ESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLV----IDATAGPFLELFNIVAEFRRD 826
A EG K + P+F+++V +D + + E N + ++
Sbjct: 812 ---------FPAPEGLNSKFISIQELPNPTFVIVVDIDLLDLSTDIWKEQLNFLHKY--- 859
Query: 827 LQCNCKVVWLDKPTSRSINFDGLEDE--TMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQ 884
K VWL S + L + + N KP + +++ +++ + + V+
Sbjct: 860 -YARAKFVWLQNHDSSNTVKTELRKKGHILTVN-----KPLYKAKMIHILEDVIKERNVE 913
Query: 885 SKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSRRDIMPNASVLLKT 944
++ D S ++ + + S +I E GSS+ L T
Sbjct: 914 VQKKNMKEDDLHESLEIEYTHHCDVASSDGS--DISEIGSSN---------------LVT 956
Query: 945 GNSSGEGPRRDIM--------PNASVLLKTGNSSGEGSSRYKQTEIEEED---GERSQA- 992
N GE R +++ ++ LL N E + T + ED GE S+
Sbjct: 957 AN--GEKQREEVVRINPSSLYQKSNCLLGLSNGYMEHKEAFISTRAKGEDSKGGETSRVS 1014
Query: 993 --------QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV------ 1038
+K L G +IL+A+D+ +++RVA I L +GATV A +G+ A+ +
Sbjct: 1015 GSSKAMNGKKSLEGLRILLAEDTAVIQRVATIMLEKMGATVVAVGDGQQAVDALNGMPGV 1074
Query: 1039 -RSGLNDQRD-LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAH 1096
R+ + Q + L P YD ILMDC+MP M+GYEAT++IR+ E HIPI+ALTAH
Sbjct: 1075 ERNTITSQTEILSFP---SYDLILMDCQMPKMDGYEATKEIRKSEIGTSFHIPIVALTAH 1131
Query: 1097 ISGEEADKTIEAGMDVHLGKPLNRDHLMEA 1126
+ K +E GMD +L KP++ LME+
Sbjct: 1132 AMSCDEAKCLEVGMDAYLTKPIDFK-LMES 1160
>gi|18398532|ref|NP_565424.1| histidine kinase 1 [Arabidopsis thaliana]
gi|332278154|sp|Q9SXL4.2|AHK1_ARATH RecName: Full=Histidine kinase 1; AltName: Full=Arabidopsis histidine
kinase 1; Short=AtHK1; AltName: Full=Protein AUTHENTIC
HIS-KINASE 1
gi|330251597|gb|AEC06691.1| histidine kinase 1 [Arabidopsis thaliana]
Length = 1207
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 250/885 (28%), Positives = 398/885 (44%), Gaps = 170/885 (19%)
Query: 296 VYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIK 355
V + +PRK ++ V + + LI+LI +V + + KEM L A LI+
Sbjct: 425 VGVVIIPRKFIMGKVDERAFKTLIILISASVCIFFIGCVCILILTNGVSKEMKLRAELIR 484
Query: 356 QMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
Q++A ++AE S KS AN SH++R +A + GL+++ + +E + Q+ C
Sbjct: 485 QLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKC 544
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
+ LL LLN+ILD SKVE+GK+ L E +FD+G LE +VD+F + VE VLD SD
Sbjct: 545 STALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDD 604
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP-SLSSSRHGF 534
+ V+GD +L QI +NL+SN++KFT+ GHI +R + +++ + S+S R
Sbjct: 605 MP---ALVRGDSARLVQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMSVSVDRR-- 659
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ-- 592
+ + + K + R L+ + ++ N M FEVDDTG GI K +VFE++ Q
Sbjct: 660 -KPWAPMKTKQVQHRNHLQ---KSCKNANKMVLWFEVDDTGCGIDPSKWDSVFESFEQAD 715
Query: 593 --VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
GGTGLGL IV++LV MGG+I++V K NG GT R ++L + D N
Sbjct: 716 PSTTRTHGGTGLGLCIVRNLVNKMGGEIKVVQK-NG-LGTLMR--LYLILSTPDTVDQNI 771
Query: 651 QGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIA 710
Q P G V+L +
Sbjct: 772 Q--------------------------------------------PDFSKYGLVVMLSMY 787
Query: 711 NEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDS 770
R I K++ GI S W L ++ L +S S SD
Sbjct: 788 GSTARMITSKWLRKHGIATVEASDWNELTQIIRDLLETGSRDNSFDSQHNISD------- 840
Query: 771 ESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILL----VIDATAGPFLELFNIVAEFRRD 826
PL A +L P F+++ V+D T + E N + F
Sbjct: 841 --------PLRA------ELSNIVEIKNPVFVIVVDIGVLDLTTNIWKEQLNYLDRFSN- 885
Query: 827 LQCNCKVVWLDK-PTSRSINFDGLEDETMDPNDDVLL--KPFHGSRLYKVIKLLPEFGGV 883
K WL K TS ++ + + V++ KP + +++ ++++ + +
Sbjct: 886 ---KAKFAWLLKHDTSNTVKTE------LRRKGHVMMVNKPLYKAKMIQILEAV-----I 931
Query: 884 QSKRHGKAS--RDAGSSSYSKH------PYR-----TGKSRSKAGRHEIQEEGSSSSEHS 930
++++ G + R+ G+ S H P + + S +G ++ + S+ HS
Sbjct: 932 KNRKRGLCNDLRNRGNGSDESHDCLEIDPTQFDTCSSDDSSETSGEKQVDKSVKPSTLHS 991
Query: 931 RRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGER- 989
++ N + T N +S ++ EE+ +R
Sbjct: 992 ------------------------PVLKNYLIDATTSNDDSTSASMTQKNPEEEDWKDRL 1027
Query: 990 -------SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ-LVRSG 1041
+ QK L G +IL+A+D+ +L+RVA I L +GATV A +G+ A+ L
Sbjct: 1028 YSGIALDGKNQKSLEGIRILLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYKS 1087
Query: 1042 LNDQ-------------------RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK 1082
+N Q R+ + PYD ILMDC+MP M+GYEAT+ IR E
Sbjct: 1088 INAQAPTEEHKSFEEETANKVTTRETSLRNSSPYDLILMDCQMPKMDGYEATKAIRRAEI 1147
Query: 1083 RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++HIPI+ALTAH + K +E GMD +L KP++R ++ I
Sbjct: 1148 GTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTI 1192
>gi|168003958|ref|XP_001754679.1| SNLA osmosensory protein [Physcomitrella patens subsp. patens]
gi|162694300|gb|EDQ80649.1| SNLA osmosensory protein [Physcomitrella patens subsp. patens]
Length = 1189
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 292/1114 (26%), Positives = 477/1114 (42%), Gaps = 198/1114 (17%)
Query: 100 NQTLALYSNSS----------FSPNPNGFPIAKGKYT-WYKQPVDRDTGKLYGEAI---- 144
N T+ +Y+N+S SP+P P+ T W PV+ Y E +
Sbjct: 179 NNTIYVYTNASAGDPLGGVDLLSPSPAAAPLTDAPVTTWPDGPVNTSNITWYTETVNSYT 238
Query: 145 --VTKPSSVSTSTWFLKALNSTDGLGSLGTGW----SKARDALFLNTAGINGTRGAVSLG 198
+ P +V+ S K+++ L + W S+ D L++A +G+ +
Sbjct: 239 GGSSSPPNVTQSYDLSKSIDDVLFLRNTEVTWRVTVSEFEDTPLLSSAAPIRHQGS-DMI 297
Query: 199 FPVKPITNLFAGINLY--------GGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLIT 250
V IT + I+ + G L + T+ G++L N+ M + I ++
Sbjct: 298 VAVTGITTALSSISQFLRELTSTHSGYLYLTTSKGQLLAAST-NSSMINTSGPIRTLVMA 356
Query: 251 N------TKTRAQQMNP-------VKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVY 297
N K AQ +N V+ V + N L + + +C + +K V
Sbjct: 357 NESSDAVIKAGAQWLNERYGFEGLVQTV-VHAENVVLEGKRYYIDTFC--LSLPRLKMVG 413
Query: 298 ALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQM 357
+ +PR ++ V R K L +LI ++ +L+ F+ EM L A LIK +
Sbjct: 414 VIIIPRTYVMGEVDRRGKATLAILIAISSCILLVGCVFIIFFTSGVSTEMKLRAELIKHL 473
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A ++AE S KS AN SH++R +A + GL+++ + SE + Q+ C+
Sbjct: 474 DARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDCLSSEQVNMVSQIRRCST 533
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL LLN+ILD SKVE+GK+ L DFD+ LE +VD+F + +E+VLD +D
Sbjct: 534 ALLRLLNNILDISKVESGKLVLEAADFDLNRELEGLVDMFSVQCVDHDIEIVLDLADDMP 593
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
V+GD + QI +NL++N+VKFTS GH+ +R S N S ++ R G L
Sbjct: 594 ---RMVRGDSARTVQIFANLIANSVKFTSSGHVILRGW----SGSTNMSANAMRSGLLFG 646
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+ ++ N + GD+ +D FEV+DTG GI K + VF+++VQ
Sbjct: 647 TNDMWEPNWQ--GDVTG-GTNNQDLGKFLLWFEVEDTGCGIDSSKWEAVFDSFVQADPST 703
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGE 653
GGTGLGL IV+SLVR MGGDI+IV KE GT R +L + + E
Sbjct: 704 TRTYGGTGLGLCIVRSLVRKMGGDIKIVKKEGP--GTLLRL--YLVVGQP------VDSE 753
Query: 654 KELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEE 713
E+ PR+++L L + +
Sbjct: 754 PEM--------------------------------PRMSVL------------LAMKGDV 769
Query: 714 RRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESA 773
R I ++M G++V S W+ L+ DL + S S
Sbjct: 770 GRGILAQWMHYRGLHVYEASEWDEAVQVLE-------------------DLLTDEHSASR 810
Query: 774 SFKEVPLS----AMEGT--EHKLQGYKRRGAPSFILLVIDATAGPFLE-------LFNIV 820
KE+P + G + ++Q +K L V+D+ P+ E + +++
Sbjct: 811 DAKEIPDDEVSLVLSGNPEQWEMQNFKS-------LAVLDSELIPWSENSKQVESMLDVL 863
Query: 821 AEFRRDLQCNCKVVWL---DKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLL 877
EFR + WL D P + ++ N +P + S+L +++ +
Sbjct: 864 DEFRDR---GILISWLFTHDTPNALKTQLRR-RGYSITAN-----QPLYKSKLLQLLTSM 914
Query: 878 PEFGGVQ--SKRHGKASRDAG---SSSYSKHPYRTGKSRSKAGRHEIQEE-------GSS 925
G ++ S RH A S+ + Y + R+E++++ G
Sbjct: 915 --LGCIERGSSRHSIFDLQASPVMSNGHRNSGYFDDIKSAAIDRYELEKQQSQVCVLGDG 972
Query: 926 SSEHSRRDIMPNASVLLKTGNSSGEGPR------RDIMPNASVLLKTGNSSGEGSSRYKQ 979
S H I P+ S+L +S P+ L+ N + E S K
Sbjct: 973 SDGHHVVHISPSMSLLSNQSHSEASKPQDASNWSNQDATKTQALVTHSNETKEPSIPRKA 1032
Query: 980 TEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR 1039
+ R L G +IL+A+D+ +L +VA I L +GA V A +G A++ +
Sbjct: 1033 S------ANRLGPSNALAGIRILLAEDTPVLAKVATIMLEKMGARVVAVGDGLQAVETIG 1086
Query: 1040 SGLNDQ------RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIAL 1093
Q P + +D +LMDC+MP M+GYEAT+ IR+ E+ H+P++AL
Sbjct: 1087 RSREAQNVAETGESTTPPTVDKFDLVLMDCQMPRMDGYEATKAIRKAEEGKDWHLPVVAL 1146
Query: 1094 TAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
TAH + K ++ GMD +L KP++ ++ I
Sbjct: 1147 TAHAMSSDEAKCLQVGMDAYLTKPIDSKLMVSTI 1180
>gi|4586626|dbj|BAA32085.1| histidine kinase 1 [Arabidopsis thaliana]
Length = 1207
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 249/885 (28%), Positives = 397/885 (44%), Gaps = 170/885 (19%)
Query: 296 VYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIK 355
V + +PRK ++ V + + LI+LI +V + + KEM L A LI+
Sbjct: 425 VGVVIIPRKFIMGKVDERAFKTLIILISASVCIFFIGCVCILILTNGVSKEMKLRAELIR 484
Query: 356 QMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
Q++A ++AE S KS AN SH++R +A + GL+++ + +E + Q+ C
Sbjct: 485 QLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKC 544
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
+ LL LLN+ILD SKVE+GK+ L E +FD+G LE +VD+F + VE VLD SD
Sbjct: 545 STALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDD 604
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP-SLSSSRHGF 534
+ V+GD +L QI +NL+SN++KFT+ GHI +R + +++ + S+S R
Sbjct: 605 MP---ALVRGDSARLVQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMSVSVDRR-- 659
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ-- 592
+ + + K + R L+ + ++ N M FEVDDTG GI K +VFE++ Q
Sbjct: 660 -KPWAPMKTKQVQHRNHLQ---KSCKNANKMVLWFEVDDTGCGIDPSKWDSVFESFEQAD 715
Query: 593 --VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
GGTGLGL IV++LV MGG+I++V K NG GT R ++L + D N
Sbjct: 716 PSTTRTHGGTGLGLCIVRNLVNKMGGEIKVVQK-NG-LGTLMR--LYLILSTPDTVDQNI 771
Query: 651 QGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIA 710
Q P G V+L +
Sbjct: 772 Q--------------------------------------------PDFSKYGLVVMLSMY 787
Query: 711 NEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDS 770
R I K++ GI S W L ++ L +S S SD
Sbjct: 788 GSTARMITSKWLRKHGIATVEASDWNELTQIIRDLLETGSRDNSFDSQHNISD------- 840
Query: 771 ESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILL----VIDATAGPFLELFNIVAEFRRD 826
PL A +L P F+++ V+D T + E N + F
Sbjct: 841 --------PLRA------ELSNIVEIKNPVFVIVVDIGVLDLTTNIWKEQLNYLDRFSN- 885
Query: 827 LQCNCKVVWLDK-PTSRSINFDGLEDETMDPNDDVLL--KPFHGSRLYKVIKLLPEFGGV 883
K WL K TS ++ + + V++ KP + +++ ++++ + +
Sbjct: 886 ---KAKFAWLLKHDTSNTVKTE------LRRKGHVMMVNKPLYKAKMIQILEAV-----I 931
Query: 884 QSKRHGKAS--RDAGSSSYSKH------PYR-----TGKSRSKAGRHEIQEEGSSSSEHS 930
++++ G + R+ G+ S H P + + S +G ++ + S+ HS
Sbjct: 932 KNRKRGLCNDLRNRGNGSDESHDCLEIDPTQFDTCSSDDSSETSGEKQVDKSVKPSTLHS 991
Query: 931 RRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGER- 989
++ N + T N +S ++ EE+ +R
Sbjct: 992 ------------------------PVLKNYLIDATTSNDDSTSASMTQKNPEEEDWKDRL 1027
Query: 990 -------SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ-LVRSG 1041
+ QK L G + L+A+D+ +L+RVA I L +GATV A +G+ A+ L
Sbjct: 1028 YSGIALDGKNQKSLEGIRFLLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYKS 1087
Query: 1042 LNDQ-------------------RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK 1082
+N Q R+ + PYD ILMDC+MP M+GYEAT+ IR E
Sbjct: 1088 INAQAPTEEHKSFEEETANKVTTRETSLRNSSPYDLILMDCQMPKMDGYEATKAIRRAEI 1147
Query: 1083 RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++HIPI+ALTAH + K +E GMD +L KP++R ++ I
Sbjct: 1148 GTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTI 1192
>gi|357483831|ref|XP_003612202.1| Histidine kinase osmosensor protein [Medicago truncatula]
gi|355513537|gb|AES95160.1| Histidine kinase osmosensor protein [Medicago truncatula]
Length = 1218
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 251/883 (28%), Positives = 400/883 (45%), Gaps = 171/883 (19%)
Query: 293 VKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCAS 352
+ V + +PRK ++ V S + L++LI ++ + + + KEM+L A
Sbjct: 451 ITKVGVIIIPRKYIMGQVDERSFKTLVILISASLCIFVIGCVCILILTNGVSKEMNLRAE 510
Query: 353 LIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM 412
LI Q+EA ++AE S KS AN SH++R +A + GL+++ + +E + + Q+
Sbjct: 511 LISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQI 570
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
C+ LL LLN+ILD SKVE+GK+ L + +FD+G LE +VD+F + VE VLD
Sbjct: 571 RKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDL 630
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
SD V+GD ++ Q+ +NL++N++KFT+ GH+ +R + P+ S + S +
Sbjct: 631 SDDMP---KLVRGDSGRVVQVFANLINNSIKFTTSGHVILRGWCEYPN-----SCNDSPN 682
Query: 533 GFL-QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
+L Q S +K+K+ A + RD N + FEV+DTG GI K +VFE++
Sbjct: 683 FYLDQKKSRNLHKSKEKPNASHAKRISMRD-NKVILWFEVEDTGCGIDPSKWDSVFESFE 741
Query: 592 QVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
Q GGTGLGL IV++LV MGG+I++ KE +GT R + L
Sbjct: 742 QADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEG--QGTLMRLCLLL--------- 790
Query: 648 NNTQGEKELAGGDSAAGDTQLQH-MNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVV 706
SA D QH +NLT G V+
Sbjct: 791 -------------SAPVDVTEQHALNLT-------------------------DNGLVVL 812
Query: 707 LLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSS 766
L + R I K++ G+ S W L L+ L SIH+
Sbjct: 813 LALQGNMGRIITSKWLTKKGVCTMEASEWNGLTQILRELFHARSSIHN------------ 860
Query: 767 RSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLV----IDATAGPFLELFNIVAE 822
S++ A + P++ +EG + KL K P F+++V +D + + E N + +
Sbjct: 861 -SNNFDAHY---PIN-LEGFKSKLLSIKDMRNPIFVIVVDIGLLDLSTDIWKEQLNFLHK 915
Query: 823 FRRDLQCNCKVVW-LDKPTSRSINFDGLEDETMDPNDDVLL--KPFHGSRLYKVIKL--- 876
+ K VW L+ TS +I + + +L+ KP + +++ +++
Sbjct: 916 YFG----RAKFVWMLNHDTSNTIKTE------LRRKGHLLMVNKPLYKAKMIHILEAVIK 965
Query: 877 ---------------LPEFGGVQSKRHGKA--SRDAGSSSYSKHP-YRTGKSRSKAGRHE 918
L EF + S A S D+ S S+ P + +
Sbjct: 966 ERNHELQKKNMKEGDLHEFLEIDSTHFDAATSSDDSDISEISEKPIVKLTNENEHLEENN 1025
Query: 919 IQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYK 978
++E S SSE + K N + +G R
Sbjct: 1026 SRKEESCSSEEKKA--------------------------------KETNFATQGYDRVT 1053
Query: 979 QTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV 1038
+T E D +K L G +IL+A+D+ +++RVA I L +GA V A +G+ A+ +
Sbjct: 1054 RTRKEVND------KKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDAL 1107
Query: 1039 ----------RSGLNDQRDL-GAPHILP---YDYILMDCEMPIMNGYEATRKIREEEKRN 1084
R L R+ IL YD ILMDC+MP M+GYEAT++IR+ E+
Sbjct: 1108 NYMASAEDCRRESLQKDRNTRSQTEILTCHQYDLILMDCQMPKMDGYEATKEIRKSEEGT 1167
Query: 1085 QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
HIPI+ALTAH + K ++ GMD +L KP++ ++ I
Sbjct: 1168 GKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKLMVSTI 1210
>gi|255576483|ref|XP_002529133.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223531412|gb|EEF33246.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 354
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 167/357 (46%), Positives = 218/357 (61%), Gaps = 46/357 (12%)
Query: 780 LSAMEGTEHKLQGYKR----RGAPSFILLVIDATAGPFLELFNIVAEFRRDL-QCNCKVV 834
LSA++GTE K Y+ +GAP FILLVID GPF EL+ V E R+ L + CKV+
Sbjct: 30 LSALDGTERKSPSYRSSSILKGAPGFILLVIDTGTGPFEELYEAVTEIRKSLHRACCKVI 89
Query: 835 WLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRD 894
WLDKPTS SI GLED+T+ +D++LLKPFHGSRLY V++ LPE GG + HG +S +
Sbjct: 90 WLDKPTSHSIIRRGLEDDTIGSDDEILLKPFHGSRLYHVMRFLPELGG--TLHHGVSSSE 147
Query: 895 AGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSE-HSRRDIMPNASVLLKTGNSSGEGPR 953
S + +T I++ GSSSS H +RD+ LK G SS E
Sbjct: 148 PKKES-TVQSIKT-----------IKDPGSSSSAIHLQRDLG------LK-GTSSRE--- 185
Query: 954 RDIMPNASVLLKTGNSSGEGSSRYK--QTEIEEEDGERSQAQKPLRGKKILVADDSMMLR 1011
+ + + RY +E+ + + +KPL G + LVADD+ L+
Sbjct: 186 -----------QHKTTREYSARRYSVGSSEVHDRECSNKSNEKPLSGMRFLVADDNQALQ 234
Query: 1012 RVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG 1070
VA+ NL +LGA+ V+ C +G ALQLVR GL +Q+ G + PYDYILMDCEMPIMNG
Sbjct: 235 MVAKANLSNLGASSVKLCPSGAEALQLVRFGLQEQKKNGGYIVAPYDYILMDCEMPIMNG 294
Query: 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
YEATR IR EE+ +HIPIIALTAH ++ ++T EAGMD HL KPLNRD L++AI
Sbjct: 295 YEATRLIRIEERSYGIHIPIIALTAH--DDKGEETKEAGMDDHLCKPLNRDKLLKAI 349
>gi|224133676|ref|XP_002327653.1| histidine kinase osmosensor protein [Populus trichocarpa]
gi|222836738|gb|EEE75131.1| histidine kinase osmosensor protein [Populus trichocarpa]
Length = 1258
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 282/1091 (25%), Positives = 464/1091 (42%), Gaps = 187/1091 (17%)
Query: 127 WYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNST-DGLGSLGTGWSKARDALFLNT 185
WY++P+D +G+ G+A P + + L+ DG+ S SK D+ L
Sbjct: 257 WYREPLDPISGEKKGKASPIPPDDLIN----IAGLSQVPDGVASWHVAVSKYTDSPLLQA 312
Query: 186 AGINGTRGAVSLGFPVKPITNLFAG-------INLYGGRLSIATNDGKVLVQGIPNTRMT 238
A S+ V T+L++ + ++ G + + + +G +L +T
Sbjct: 313 ALPVWDASNKSIVAVVGVTTSLYSVGQLMRELVEVHSGYIYLTSQEGYLLATSTNAPLLT 372
Query: 239 IVNDSISFQLITNTKTR-------AQQMNPVKNVSCTSGN----GTLSIGKIHYKAYCSQ 287
N + LI T A+ + V T G +G Y
Sbjct: 373 --NSTTRPNLIMAVDTEEPIIRMGARWLEKVYGNKLTPGQIVQVENAKLGNQQYYIDSFF 430
Query: 288 FEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEM 347
+ + V + +PR+ ++ V + + L++LI ++ +L+ + KEM
Sbjct: 431 LNLKRLPIVGVIIIPRRYIMGKVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEM 490
Query: 348 HLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET 407
L A LI ++A ++AE + KS AN SH++R +A + GL+++ + +E
Sbjct: 491 KLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYA 550
Query: 408 NLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE 467
+ Q+ C+ LL LLN+ILD SKVE+GK+ L + +FD+G LE ++D+F + VE
Sbjct: 551 TVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQCINHNVE 610
Query: 468 VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
VLD SD V+GD ++ QI +NL+SN++KFT+ GHI +R + + +
Sbjct: 611 AVLDLSDDMP---KLVRGDSARVVQIFANLISNSIKFTTTGHIILRGWCENFNTYNDARF 667
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
H + + C + +G+ A + +N FE+DDTG GI K ++VF
Sbjct: 668 ----HLDQKKMRCAPKPKLRQQGN--HTKKAWKKDNKTILWFEIDDTGCGIDPSKWESVF 721
Query: 588 ENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
E++ Q GGTGLGL IV++LV MGG+I++V K+NG GT R + L
Sbjct: 722 ESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVV-KKNGS-GTLMRLYLLL----- 774
Query: 644 SANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGS 703
+AA D L + + NI+
Sbjct: 775 -----------------NAAAD-------------GADLQCQVDFSSQNIV--------- 795
Query: 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSD 763
V+L + R I +++ +G+ VS W L L++L H G
Sbjct: 796 -VLLALYGSMGRVIMSQWLHKIGLATLGVSDWNELTQVLRKL------FHVRRRENG--- 845
Query: 764 LSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLV----IDATAGPFLELFNI 819
+V S E + +++ + P FI++V +D + + E N
Sbjct: 846 ------------FDVNCSLNEPLKSEVRNIEDMKDPIFIIVVDIGLLDLSTDIWKEQINF 893
Query: 820 VAEFRRDLQCNCKVVW-LDKPTSRSINFDGLEDETMDPNDDVLL--KPFHGSRLYKVIK- 875
V +F K W L+ TS +I + + +L+ KP + +++ +++
Sbjct: 894 VDKF----SGKAKFAWMLNHDTSNAIKME------LRKKGHLLMVNKPLYKAKMIHILET 943
Query: 876 LLPEFGGVQSKRHGKASR-------------------DAGSSSYSKHPYRTGKSRSKAGR 916
++ E K+ A+R D SS S GKS S +
Sbjct: 944 VIKEKDLENQKKSSNATRATTKDIDMHECLEIDSTHFDTASSEESDTA-EMGKSNSPSIF 1002
Query: 917 H--EIQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMPN--------------- 959
H E Q+E + S+ V L ++ I PN
Sbjct: 1003 HLREKQKETEKIATESQCQSFKKCLVELADVDAEAREDPCQIRPNLPSTQYGKDMLVCNK 1062
Query: 960 -ASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQA-----QKPLRGKKILVADDSMMLRRV 1013
A T N S + R ++ +E G + QK L G +IL+A+D+ +L+RV
Sbjct: 1063 QAPFSTATQNESSKHEERISESSSHKEQGNSYSSKAGNQQKALDGLRILLAEDTPVLQRV 1122
Query: 1014 AEINLRHLGATVEACENGEAALQLVRSGLND----------------QRDLG-APHILPY 1056
A I L +GA V A +G A++ + L++ Q D+ +P PY
Sbjct: 1123 ATIMLEKMGAKVIAVGDGLQAVEALNCVLSEKDLKRESPGDDGERGLQTDIQESP---PY 1179
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D ILMDC+MP M+GYEAT+ IR+ E HIPI+ALTAH + K +E GMD +L K
Sbjct: 1180 DLILMDCQMPKMDGYEATKAIRKSEAGTGFHIPIVALTAHAMSSDEAKCLEVGMDAYLTK 1239
Query: 1117 PLNRDHLMEAI 1127
P++ ++ I
Sbjct: 1240 PIDYKLMVSTI 1250
>gi|449495060|ref|XP_004159723.1| PREDICTED: histidine kinase 1-like [Cucumis sativus]
Length = 1222
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 273/1053 (25%), Positives = 461/1053 (43%), Gaps = 141/1053 (13%)
Query: 127 WYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTA 186
W+++P+D +G+ G+A P + + DG+ S SK D L+ A
Sbjct: 251 WFREPLDPISGEKIGKARQIPPEDLINIAGISQV---ADGVASWHVTVSKYMDTPLLSAA 307
Query: 187 GINGTRGAVSLGFPVKPITNLFAG-------INLYGGRLSIATNDGKVLVQG-----IPN 234
S+ V T L++ + + G + + + +G +L + N
Sbjct: 308 LPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRN 367
Query: 235 T----RMTIVNDS----ISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCS 286
T ++T+ DS I KT P V + +G Y
Sbjct: 368 TSRGPKLTMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVH----EENVKLGDRQYYIDSF 423
Query: 287 QFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKE 346
+ + V + +PR+ ++ V + + L++LI ++ +L+ + + KE
Sbjct: 424 FLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKE 483
Query: 347 MHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELE 406
M L A LI ++A ++AE S KS AN SH++R +A + GL+++ + +E
Sbjct: 484 MKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQF 543
Query: 407 TNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV 466
+ Q+ C+ LL LLN+ILD SKVE+GK+ L + +FD+G LE +VD+F + V
Sbjct: 544 ATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNV 603
Query: 467 EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI---G 523
E VLD SD + KF V+GD ++ QI +NL+SN++KFT+ GHI +R + + + G
Sbjct: 604 ETVLDLSD-DMPKF--VRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMG 660
Query: 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKR 583
+ + F + K + A NA ++D N M FE+DDTG GI K
Sbjct: 661 KFCIDQKKSRFPN-------RTKMKQHGEHAKNAFKKD-NKMTLWFELDDTGCGIDSSKW 712
Query: 584 KTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
++VFE++ Q GGTGLGL IV++ +V+K GE
Sbjct: 713 ESVFESFEQADPSTTRTHGGTGLGLCIVRT----------LVNKMGGE------------ 750
Query: 640 IREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSR 699
I+ N G L L + P +S + ++
Sbjct: 751 IKVVKKN-----------------GPGTLMRFYLVLSTP-------VDSTDHHCQFDFAK 786
Query: 700 HEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRL------KSKFGSIH 753
H V+L + R I +++ +G+ S W L L+ L ++K G
Sbjct: 787 HNAV-VLLALRGSMSRLITSQWLRKVGLFTLEASEWNELTLILQELFQPRSNENKKG--F 843
Query: 754 SPHSSLG---KSDLSSRSDSESASF---KEVPLSAMEGTEHKLQGY---KRRGAPSFILL 804
SP SLG +++L D +S F ++ + + K Q Y K G F +
Sbjct: 844 SPQDSLGETLRAELMRIKDMKSQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWM 903
Query: 805 VIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKP 864
+ T+ + +L+ ++ +KP RS LE D N ++ K
Sbjct: 904 LNHDTSNAI----------KMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNLELQRK- 952
Query: 865 FHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGS 924
++ + + G +++ +SS + G S S+ +
Sbjct: 953 -------NALRNVSKEGDYHECLEIDSTQFETASSDDSDVFELGNSNSQCAIQVRDGQEE 1005
Query: 925 SSSEHSRRDIMPNASVLLK-TGNSSGEG-----PRRDIMPNASVLLKTGNSSGEGS--SR 976
++ + + +P + L++ T S EG + D+ N+S+ + S E + S
Sbjct: 1006 TTMKPCQSSFLPIKNSLVELTHVHSIEGNVKTSDQYDVRQNSSMSQCQSSESNEQNLGSN 1065
Query: 977 YKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ 1036
Y +++ E Q +K L G +IL+A+D+ +L+RV I L +GA V A +G A++
Sbjct: 1066 YPKSQ-GESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVE 1124
Query: 1037 LVRSGLN--DQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALT 1094
+ + L+ +QR YD ILMDC+MP M+GYEAT+ IR+ E +HIPI+ALT
Sbjct: 1125 ALTAMLSAEEQRREFPTR---YDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALT 1181
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
AH + K +E GMD +L KP++ ++ I
Sbjct: 1182 AHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTI 1214
>gi|449456825|ref|XP_004146149.1| PREDICTED: histidine kinase 1-like [Cucumis sativus]
Length = 1221
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 273/1053 (25%), Positives = 461/1053 (43%), Gaps = 141/1053 (13%)
Query: 127 WYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTA 186
W+++P+D +G+ G+A P + + DG+ S SK D L+ A
Sbjct: 250 WFREPLDPISGEKIGKARQIPPEDLINIAGISQV---ADGVASWHVTVSKYMDTPLLSAA 306
Query: 187 GINGTRGAVSLGFPVKPITNLFAG-------INLYGGRLSIATNDGKVLVQG-----IPN 234
S+ V T L++ + + G + + + +G +L + N
Sbjct: 307 LPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRN 366
Query: 235 T----RMTIVNDS----ISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCS 286
T ++T+ DS I KT P V + +G Y
Sbjct: 367 TSRGPKLTMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVH----EENVKLGDRQYYIDSF 422
Query: 287 QFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKE 346
+ + V + +PR+ ++ V + + L++LI ++ +L+ + + KE
Sbjct: 423 FLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKE 482
Query: 347 MHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELE 406
M L A LI ++A ++AE S KS AN SH++R +A + GL+++ + +E
Sbjct: 483 MKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQF 542
Query: 407 TNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV 466
+ Q+ C+ LL LLN+ILD SKVE+GK+ L + +FD+G LE +VD+F + V
Sbjct: 543 ATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNV 602
Query: 467 EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI---G 523
E VLD SD + KF V+GD ++ QI +NL+SN++KFT+ GHI +R + + + G
Sbjct: 603 ETVLDLSD-DMPKF--VRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMG 659
Query: 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKR 583
+ + F + K + A NA ++D N M FE+DDTG GI K
Sbjct: 660 KFCIDQKKSRFPN-------RTKMKQHGEHAKNAFKKD-NKMTLWFELDDTGCGIDSSKW 711
Query: 584 KTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
++VFE++ Q GGTGLGL IV++ +V+K GE
Sbjct: 712 ESVFESFEQADPSTTRTHGGTGLGLCIVRT----------LVNKMGGE------------ 749
Query: 640 IREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSR 699
I+ N G L L + P +S + ++
Sbjct: 750 IKVVKKN-----------------GPGTLMRFYLVLSTP-------VDSTDHHCQFDFAK 785
Query: 700 HEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRL------KSKFGSIH 753
H V+L + R I +++ +G+ S W L L+ L ++K G
Sbjct: 786 HNAV-VLLALRGSMSRLITSQWLRKVGLFTLEASEWNELTLILQELFQPRSNENKKG--F 842
Query: 754 SPHSSLG---KSDLSSRSDSESASF---KEVPLSAMEGTEHKLQGY---KRRGAPSFILL 804
SP SLG +++L D +S F ++ + + K Q Y K G F +
Sbjct: 843 SPQDSLGETLRAELMRIKDMKSQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWM 902
Query: 805 VIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKP 864
+ T+ + +L+ ++ +KP RS LE D N ++ K
Sbjct: 903 LNHDTSNAI----------KMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNLELQRK- 951
Query: 865 FHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGS 924
++ + + G +++ +SS + G S S+ +
Sbjct: 952 -------NALRNVSKEGDYHECLEIDSTQFETASSDDSDVFELGNSNSQCAIQVRDGQEE 1004
Query: 925 SSSEHSRRDIMPNASVLLK-TGNSSGEG-----PRRDIMPNASVLLKTGNSSGEGS--SR 976
++ + + +P + L++ T S EG + D+ N+S+ + S E + S
Sbjct: 1005 TTMKPCQSSFLPIKNSLVELTHVHSIEGNVKTSDQYDVRQNSSMSQCQSSESNEQNLGSN 1064
Query: 977 YKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ 1036
Y +++ E Q +K L G +IL+A+D+ +L+RV I L +GA V A +G A++
Sbjct: 1065 YPKSQ-GESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVE 1123
Query: 1037 LVRSGLN--DQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALT 1094
+ + L+ +QR YD ILMDC+MP M+GYEAT+ IR+ E +HIPI+ALT
Sbjct: 1124 ALTAMLSAEEQRREFPTR---YDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALT 1180
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
AH + K +E GMD +L KP++ ++ I
Sbjct: 1181 AHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTI 1213
>gi|167998684|ref|XP_001752048.1| sensory histidine protein kinase, osmosensor [Physcomitrella patens
subsp. patens]
gi|162697146|gb|EDQ83483.1| sensory histidine protein kinase, osmosensor [Physcomitrella patens
subsp. patens]
Length = 1436
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 231/906 (25%), Positives = 404/906 (44%), Gaps = 156/906 (17%)
Query: 293 VKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCAS 352
VK + +PR + ++ I L ++++GV+ + ++ + E L A
Sbjct: 522 VKLSVVVMIPRHSFWGPMDYYTRITWISLPLLSIGVVFIGCSLIYLLVEQVQAEEKLRAE 581
Query: 353 LIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM 412
+ +Q EA +AE K+ ++ SH++R +A I GL+++ +E E E ++RQ+
Sbjct: 582 IQRQSEAKCRAEASRDAKTNFLSSMSHELRTPMACIIGLLDMLLME-NLTVEHEGSVRQI 640
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
+ CA L+ LLNS LD +KVE+GK+ L + +F++ L ++D+F K + + LD
Sbjct: 641 HRCATSLVSLLNSALDIAKVESGKLVLEKAEFNLEAELTALIDVFSVQCDNKNLFISLDL 700
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
++ SV + V GD ++ QI +NL+ N++KFTS+G I VR V S + S R
Sbjct: 701 AE-SVPAY--VIGDSARVMQIFTNLIGNSIKFTSKGRIVVRGRVSN-SESSSGSGKGHRR 756
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
F + LE + + FE+DDTG GI R+ VFEN+VQ
Sbjct: 757 SF-------------SPFSLERCTEEATVPDTVVLVFEIDDTGPGIEPALREKVFENFVQ 803
Query: 593 ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
GGTGLGLGIV+SLV+LMGG I IV+K G F+F++
Sbjct: 804 GNASTTRIHGGTGLGLGIVRSLVQLMGGSIRIVEKTGA--GAVFQFSICF---------- 851
Query: 649 NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLL 708
SL+ T +L P HE + VV+
Sbjct: 852 ------------------------------QRSLTPETLPYKL----PPFYHE-AEVVIG 876
Query: 709 IANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRL--------KSKFGSIHSPHSSLG 760
+ + + R +A +++ G+ V V WE++ L+ L S+ + S G
Sbjct: 877 VPDADTRAVASEWIVRHGLMVHQVETWEQILLHLRALHGRNPQDKNSETSEMEHTKSIDG 936
Query: 761 KSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYK------RRGAPSFI--LLVIDATAGP 812
++ DS S F + ++ ++ + ++ R + + L++ID + P
Sbjct: 937 SQKFLNKVDSASDYFTNLSPQNLQSPNNRFEFWRSWKNIGERPSSEQVRQLMLIDTSLLP 996
Query: 813 FLELFNIVAEFR-----------------------------RDLQCNCKVVWLDKPTSRS 843
L + E+ RDLQ VVW+
Sbjct: 997 KHVLPRDLEEYLQESGFLTGLSTQCLDKSGIHKRDMNQRQIRDLQQKLSVVWV------- 1049
Query: 844 INFDGLEDETMDP---------NDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRD 894
+ T +P + ++ +P H +RL ++ +L+ + S RH +++ +
Sbjct: 1050 -----MASNTHEPIKAALRAVRSSFIVRRPLHAARLKEIFQLVAQNSDAFSSRHSESAPE 1104
Query: 895 AGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSRRDIMPNASV--LLKTGNSSGEGP 952
+SS + + A E+ SSS S + A+V + ++ P
Sbjct: 1105 VLASSTINYVKQQEWDDPYACDSEVPLAQESSSRASTIGVTHGATVRNVRHRPTAAKSVP 1164
Query: 953 RRDIMPNASVLLKTGNSSGEGS------SRYKQTEIEEE---DGER--SQAQKPLRGKKI 1001
+ +I + + +++ + + S S++ + + +G + + KPL +I
Sbjct: 1165 QEEI-SYSEMEIRSSRQTDQPSQSMVTPSKHMKKTVRTTTHVNGSKKMNNVPKPLENLEI 1223
Query: 1002 LVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILM 1061
LVA+D+ +LR++A LR LGA NG+ L+ V + + + P++ ILM
Sbjct: 1224 LVAEDTPLLRKLAAAMLRRLGAVTYEASNGQEVLEAVMNRMQCGQS-------PFNCILM 1276
Query: 1062 DCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRD 1121
DC+MP+M+GYEA + IRE EK I+ALTA+ + K ++AGMD L KP++++
Sbjct: 1277 DCQMPVMDGYEACKAIREFEKDVTWRTSIVALTANAMASDEQKCLKAGMDAFLTKPIDQE 1336
Query: 1122 HLMEAI 1127
++++ I
Sbjct: 1337 YMVQVI 1342
>gi|168015329|ref|XP_001760203.1| SNLB osmosensory protein [Physcomitrella patens subsp. patens]
gi|162688583|gb|EDQ74959.1| SNLB osmosensory protein [Physcomitrella patens subsp. patens]
Length = 1191
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 173/553 (31%), Positives = 268/553 (48%), Gaps = 53/553 (9%)
Query: 118 FPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGW--- 174
P+ G TWYK+P++ TGK +T P ++ TS K ++ L S W
Sbjct: 220 IPLENGNITWYKEPINPYTGKASSPINIT-PINI-TSYDLSKNIDYVLALKSTEVSWRLV 277
Query: 175 -SKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLY--------GGRLSIATNDG 225
+++ D L++A R + + V +T + I+ + G L + T DG
Sbjct: 278 VTESDDTPLLSSATPVRYRDS-GIVVAVTGVTAALSSISQFLRELTSSHSGYLYLTTADG 336
Query: 226 KVLVQGI---------PNTRMTIVNDSISFQLITNTKTRAQQMNP-------VKNVSCTS 269
++L P + + N+S S +I K AQ + VK V
Sbjct: 337 QLLATSTNASLIDSSGPRRTLVLANES-SDPVI---KAGAQWLYARHGFEGLVKTV--VH 390
Query: 270 GNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVL 329
+ GK +Y S ++G++ V + +PR ++ V R+ + L +LI ++ +L
Sbjct: 391 AENVVLEGKRYYIDTFS-LSLSGLQMVGVIIIPRTYVMGEVDRSGRATLAILIAISCCIL 449
Query: 330 ISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGIT 389
F+ EM L A LI ++A ++AE S KS AN SH++R +A +
Sbjct: 450 FVGCFFIIFFTSGVSTEMKLRAELINHLDARRRAEASSNYKSQFLANMSHELRTPMAAVI 509
Query: 390 GLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449
GL+++ + SE + Q+ C+ LL LLN+ILD SKVE+GK+ L DFD+
Sbjct: 510 GLLDILLCDDCLSSEQINMVSQIRRCSTALLRLLNNILDISKVESGKLVLEAADFDLNRE 569
Query: 450 LEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGH 509
LE +VD+F + +E+VLD +D V+GD ++ QI +NL++N+VKFTS GH
Sbjct: 570 LEGLVDMFSVQCVDHDIEIVLDLADDMP---RMVRGDSARIVQIFANLIANSVKFTSSGH 626
Query: 510 ISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTF 569
+ +R P N S ++ R G L ++ + + + N + + M F
Sbjct: 627 VILRGWCSSP----NMSATAMRSGLLFGMNDSTWNQNRLSHEGGVTNNYEPSQFLM--WF 680
Query: 570 EVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKEN 625
EV+DTG GI K + VFE++VQ GGTGLGL IV+SLVR MGGDI+IV KE
Sbjct: 681 EVEDTGCGIDSSKWEAVFESFVQADPSTTRTYGGTGLGLCIVRSLVRKMGGDIKIVKKEG 740
Query: 626 GERGTCFRFNVFL 638
GT RF +
Sbjct: 741 P--GTLLRFYLLF 751
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 84/138 (60%), Gaps = 6/138 (4%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV-RS----GLNDQRDLGA 1050
L G +IL+A+D+ +L +VA I L +GA V A +G A++ + RS + D +
Sbjct: 1045 LAGIRILLAEDTPVLAKVATIMLEKMGACVVAVGDGLQAVETIGRSRGEHNVGDTEESTT 1104
Query: 1051 P-HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
P I +D +LMDC+MP M+GYEAT+ IR+ E+ H+P++ALTAH + K ++ G
Sbjct: 1105 PAEIDGFDLVLMDCQMPRMDGYEATKAIRKAEEGKNWHLPVVALTAHAMSSDEAKCLQVG 1164
Query: 1110 MDVHLGKPLNRDHLMEAI 1127
MD +L KP++ ++ I
Sbjct: 1165 MDAYLTKPIDSKLMVSTI 1182
>gi|302796237|ref|XP_002979881.1| hypothetical protein SELMODRAFT_111212 [Selaginella moellendorffii]
gi|300152641|gb|EFJ19283.1| hypothetical protein SELMODRAFT_111212 [Selaginella moellendorffii]
Length = 325
Score = 209 bits (531), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 123/271 (45%), Positives = 171/271 (63%), Gaps = 13/271 (4%)
Query: 378 SHDIRAALAGITGLIELC--YVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAG 435
SHD+R LA I GLI+LC Y E ELE+N+ QM CA LLG+LNSILD SK E G
Sbjct: 2 SHDLRTPLAAIIGLIDLCLSYKER-LSVELESNMLQMKTCATTLLGILNSILDMSKAEVG 60
Query: 436 KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILS 495
K++L DFD+ ++LE+ VD+F V +KG+EVVL+ D S+ V+GD ++KQ+L
Sbjct: 61 KLELEVADFDLIKVLEEAVDIFAVVGAKKGIEVVLELPDDSIELVRWVRGDAGRVKQLLC 120
Query: 496 NLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG-FLQS--ISCLFYKNKKARGDL 552
+LLSN VKFTS G++ +RA K+ S+ + +S R G + Q +SCL +
Sbjct: 121 DLLSNGVKFTSRGYVILRAFPKQSSSQSWVASASRRSGRWFQKTFVSCLRTSGSSSSRSS 180
Query: 553 EAVNAAQ-RDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIV 607
+ +Q + +EF FEVDDTG+GIP+ +R+ VF N+VQ V GGTGLGL IV
Sbjct: 181 QIPARSQGSSSDTLEFEFEVDDTGQGIPQSRREAVFRNFVQGSSKVHCTYGGTGLGLAIV 240
Query: 608 QSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+SLV +MGG I++ +K+ GT F+FN+
Sbjct: 241 RSLVHMMGGQIKVANKDG--PGTLFKFNLLF 269
>gi|302813527|ref|XP_002988449.1| hypothetical protein SELMODRAFT_128087 [Selaginella moellendorffii]
gi|300143851|gb|EFJ10539.1| hypothetical protein SELMODRAFT_128087 [Selaginella moellendorffii]
Length = 325
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/270 (45%), Positives = 171/270 (63%), Gaps = 11/270 (4%)
Query: 378 SHDIRAALAGITGLIELCYVEAGPGS-ELETNLRQMNVCANDLLGLLNSILDTSKVEAGK 436
SHD+R LA I GLI+LC S ELE+N+ QM CA LLG+LNSILD SK E GK
Sbjct: 2 SHDLRTPLAAIIGLIDLCLSHKERLSVELESNMLQMKTCATTLLGILNSILDMSKAEVGK 61
Query: 437 MQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSN 496
++L DFD+ ++LE+ VD+F V +KG+EVVL+ D S+ V+GD ++KQ+L +
Sbjct: 62 LELEVADFDLIKVLEEAVDIFAVVGAKKGIEVVLELPDDSIELVRWVRGDAGRVKQLLCD 121
Query: 497 LLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG-FLQS--ISCLFYKNKKARGDLE 553
LLSN VKFTS G++ +RA K+ S+ + +S R G + Q +SCL + + +
Sbjct: 122 LLSNGVKFTSRGYVILRAFPKQSSSQSWVASASRRSGRWFQKTFVSCLRTSSSSSNRSSQ 181
Query: 554 AVNAAQ-RDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQ 608
+Q + +EF FEVDDTG+GIP+ +R+ VF N+VQ V GGTGLGL IV+
Sbjct: 182 IPARSQGSSSDTLEFEFEVDDTGQGIPQSRREAVFRNFVQGSSKVHCTYGGTGLGLAIVR 241
Query: 609 SLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
SLV +MGG I++ +K+ GT F+FN+
Sbjct: 242 SLVHMMGGQIKVANKDG--PGTLFKFNLLF 269
>gi|62433091|emb|CAI78447.1| osmosensor histidine-aspartate kinase [Populus x canadensis]
Length = 1249
Score = 199 bits (505), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 158/540 (29%), Positives = 265/540 (49%), Gaps = 50/540 (9%)
Query: 127 WYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNST-DGLGSLGTGWSKARDALFLNT 185
WY++P+D +G+ G+A P + + L+ DG+ S SK D+ L+
Sbjct: 250 WYREPLDPTSGEKIGKASPIPPDDLIN----IAGLSQVPDGVASWHVAVSKYTDSPLLSA 305
Query: 186 A---------GINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGIPNTR 236
A I G + + V + + ++ G + + + +G +L +T
Sbjct: 306 ALPVWDAYNKSIVAVVGVTTALYSVGQLMREL--VEVHKGYIYLTSQEGYLLAT---STN 360
Query: 237 MTIVNDSISFQLITNTKTR-------AQQMNPVKNVSCTSGN----GTLSIGKIHYKAYC 285
++ +S LI T A+ + V G+ +GK + Y
Sbjct: 361 APLLTNSTRPNLIMAVDTEEPTIRMGARWLERVYGNKFPPGHVVHVENAKLGK--QQCYI 418
Query: 286 SQF--EVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAA 343
F + + V + +PR+ ++ V + + L++LI ++ +L+ F+
Sbjct: 419 DSFFLNLKKLPIVGVIIIPRRYIMGKVDERAFKTLVILISASLCILVIGCVFILILTNGV 478
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS 403
KEM L A LI ++A ++AE + KS AN SH++R +A + GL+++ + +
Sbjct: 479 SKEMKLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTN 538
Query: 404 ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
E N+ Q+ C+ LL LLN+ILD SKVE+GK+ L + +FD+G LE ++D+F +
Sbjct: 539 EQYANVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQCIN 598
Query: 464 KGVEVVLDPSDGSVLKFSK-VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI 522
VE VLD SD + K V+GD ++ QI +NL+SN++KFT+ GHI +R + +
Sbjct: 599 HNVEAVLDLSD----EMPKLVRGDSARVVQIFANLISNSIKFTTTGHIILRGWCEN---L 651
Query: 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK 582
N + H + + C + +G+ + A + EN M FE+DDTG GI K
Sbjct: 652 NNTYNDTQFHLDQKKMRCAIKPKLRQQGN--HLKKACKKENKMILWFEIDDTGCGIDPSK 709
Query: 583 RKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
++VFE++ Q GGTGLGL IV++LV MGG+I++V K+NG GT R + L
Sbjct: 710 WESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVV-KKNGP-GTLMRLYLLL 767
Score = 106 bits (265), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 96/183 (52%), Gaps = 23/183 (12%)
Query: 966 TGNSSGEGSSRYKQTEIEEEDG-----ERSQAQKPLRGKKILVADDSMMLRRVAEINLRH 1020
T N S + R +T +E G + QK L G +IL+A+D+ +L+RVA I L
Sbjct: 1061 TRNESSKHDERNSETSSHKEQGNSYSNKAGNQQKALDGLRILLAEDTPVLQRVATIMLEK 1120
Query: 1021 LGATVEACENGEAALQLVRSGLND----------------QRDLGAPHILPYDYILMDCE 1064
+GA V +G A++ + L++ Q D+ YD ILMDC+
Sbjct: 1121 MGAKVITVGDGLQAVEALNCSLSEKDCRRESPGNDGNTGLQTDIQESQ--SYDLILMDCQ 1178
Query: 1065 MPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLM 1124
MP M+GYEAT+ IR+ E +HIPI+ALTAH + K +E GMD +L KP++ ++
Sbjct: 1179 MPKMDGYEATKAIRKSETGTDLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMV 1238
Query: 1125 EAI 1127
I
Sbjct: 1239 STI 1241
>gi|224071327|ref|XP_002303406.1| histidine kinase osmosensor protein [Populus trichocarpa]
gi|222840838|gb|EEE78385.1| histidine kinase osmosensor protein [Populus trichocarpa]
Length = 1149
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 158/540 (29%), Positives = 264/540 (48%), Gaps = 50/540 (9%)
Query: 127 WYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNST-DGLGSLGTGWSKARDALFLNT 185
WY++P+D +G+ G+A P + + L+ DG+ S SK D+ L+
Sbjct: 228 WYREPLDPTSGEKIGKASPIPPDDLIN----IAGLSQVPDGVASWHVAVSKYTDSPLLSA 283
Query: 186 A---------GINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGIPNTR 236
A I G + + V + + ++ G + + + +G +L +T
Sbjct: 284 ALPVWDAYNKSIVAVVGVTTALYSVGQLMREL--VEVHKGYIYLTSQEGYLLA---TSTN 338
Query: 237 MTIVNDSISFQLITNTKTR-------AQQMNPVKNVSCTSGN----GTLSIGKIHYKAYC 285
++ +S LI T A+ + V G+ +GK + Y
Sbjct: 339 APLLTNSTRPNLIMAVDTEEPTIRMGARWLERVYGNKFPPGHVVHVENAKLGK--QQCYI 396
Query: 286 SQF--EVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAA 343
F + + V + +PR+ ++ V + + L++LI ++ +L+ F+
Sbjct: 397 DSFFLNLKRLPIVGVIIIPRRYIMGKVDERAFKTLVILISASLCILVIGCVFILILTNGV 456
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS 403
KEM L A LI ++A ++AE + KS AN SH++R +A + GL+++ + +
Sbjct: 457 SKEMKLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTN 516
Query: 404 ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
E N+ Q+ C+ LL LLN+ILD SKVE+GK+ L + +FD+G LE ++D+F +
Sbjct: 517 EQYANVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQCIN 576
Query: 464 KGVEVVLDPSDGSVLKFSK-VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI 522
VE VLD SD + K V+GD ++ QI +NL+SN++KFT+ GHI +R + +
Sbjct: 577 HNVEAVLDLSD----EMPKLVRGDSARVVQIFANLISNSIKFTTTGHIILRGWCEN---L 629
Query: 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK 582
N + H + + C + G+ + A + EN M FE+DDTG GI K
Sbjct: 630 NNTYNDTQFHLDQKKMRCAIKPKLRQHGN--HLKKACKKENKMILWFEIDDTGCGIDPSK 687
Query: 583 RKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
++VFE++ Q GGTGLGL IV++LV MGG+I++V K+NG GT R + L
Sbjct: 688 WESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVV-KKNGP-GTLMRLYLLL 745
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 85/151 (56%), Gaps = 18/151 (11%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND-------- 1044
QK L G +IL+A+D+ +L+RVA I L +GA V +G A++ + L++
Sbjct: 993 QKALDGLRILLAEDTPVLQRVATIMLEKMGAKVITVGDGLQAVEALNCSLSEKDCRRESP 1052
Query: 1045 --------QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAH 1096
Q D+ YD ILMDC+MP M+GYEAT+ IR+ E +HIPI+ALTAH
Sbjct: 1053 GNDGNTGLQTDIQESQ--SYDLILMDCQMPKMDGYEATKAIRKSETGTDLHIPIVALTAH 1110
Query: 1097 ISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ K +E GMD +L KP++ ++ I
Sbjct: 1111 AMSSDEAKCLEVGMDAYLTKPIDYKLMVSTI 1141
>gi|60545052|gb|AAQ10680.2| cold inducible histidine kinase 1 [Catharanthus roseus]
Length = 1205
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 161/538 (29%), Positives = 262/538 (48%), Gaps = 45/538 (8%)
Query: 127 WYKQPVDRDTGKLYGEAIVTKPSSV-----------STSTWFLKALNSTDG--LGSLGTG 173
WY++P+D TG+ G++ P + ++W + TD L +
Sbjct: 236 WYREPLDPATGEKIGKSSPISPDELINIAGISQVPDGQASWHVAVSKYTDSPLLSAALPV 295
Query: 174 WSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLY-----GGRLSIATNDGKVL 228
W ++ + A + T S+G +K + +G ++Y G L+ +TN +L
Sbjct: 296 WDSTKEII---VAVVGVTTALYSVGQLMKETCRVHSG-HIYLTSQEGWWLATSTN-TPLL 350
Query: 229 VQGIPNTRMTIVNDSISFQLITNT----KTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAY 284
+ ++ + DS F + + KT + P V + +G Y
Sbjct: 351 MNSSTGPKLMMAVDSQEFVIRSGAECLQKTYGNKFPPNHEVHIENAK----LGNQLYYID 406
Query: 285 CSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAAR 344
+ + V + +PRK ++ V + + L+ LI ++ +L+ +F
Sbjct: 407 SFFLNLKRLPMVGVIILPRKYVMGKVDERAFKTLLALISASLCILVIGCVCIFILTNGVS 466
Query: 345 KEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE 404
+EM L A I ++A ++AE S KS AN SH++R +A + GL+++ + +E
Sbjct: 467 REMKLRAEFISHLDARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMSDDCLTNE 526
Query: 405 LETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK 464
N+ Q+ C+ LL LLN+ILD SKVE+GK+ L E +FD+G LE +VD+F +
Sbjct: 527 QFANVTQIRKCSTALLRLLNNILDLSKVESGKLVLEETEFDLGRELEGLVDMFSVQCINH 586
Query: 465 GVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN 524
VE +LD S+ + KF V+GD ++ QI +NL+SN++KFT+ GHI VR + N
Sbjct: 587 NVETILDLSE-DMPKF--VRGDSARVVQIFANLISNSMKFTTSGHIIVRGWCENQ----N 639
Query: 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRK 584
PS+S Q C + K + + R EN + FEV+DTG GI K +
Sbjct: 640 PSISIRSSSINQK-ECWRLQRLKLKHQDSNDQKSFRKENKVVLWFEVEDTGCGIDPSKWE 698
Query: 585 TVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+VFE++ Q GGTGLGL IV++LV MGG+I++V K+NG GT R + L
Sbjct: 699 SVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVV-KKNGA-GTLMRLCLLL 754
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 96/166 (57%), Gaps = 14/166 (8%)
Query: 976 RYKQTEIEEED------GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACE 1029
R+K + + +D G QK L G +IL+A+D+ +L+RVA I L LGA V A
Sbjct: 1030 RHKNSSVNSKDRDTQSNGTLWNEQKSLDGLRILLAEDTPVLQRVATIMLEKLGAKVVAVG 1089
Query: 1030 NGEAALQLVRSGLN-DQRDLGAPH-------ILPYDYILMDCEMPIMNGYEATRKIREEE 1081
+G A+ +R + +Q +L +P LPY ILMDC+MP M+GY AT+ IR+ E
Sbjct: 1090 DGLQAVDALRFMFDSNQSNLESPEEDVINSTSLPYHLILMDCQMPKMDGYAATKAIRKSE 1149
Query: 1082 KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+HIPI+ALTAH + K +E GMD +L KP++R ++ I
Sbjct: 1150 MGTGLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTI 1195
>gi|225431092|ref|XP_002265248.1| PREDICTED: histidine kinase 1-like [Vitis vinifera]
Length = 1235
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 197/367 (53%), Gaps = 14/367 (3%)
Query: 276 IGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTF 335
+G HY + + V + +PRK ++ V + + LI+LI ++ +L+
Sbjct: 388 LGHEHYYIDSFFLNLKRLPMVGVIIIPRKYIMGKVEERALKTLIILISASLCILVIGCVC 447
Query: 336 VFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELC 395
+ KEM L A LI ++A ++AE S KS AN SH++R +A + GL+++
Sbjct: 448 ILILTNGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDIL 507
Query: 396 YVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVD 455
+ +E + Q+ C+ LL LLN+ILD SKVE+GK+ L + +FD+G LE +VD
Sbjct: 508 ICDDCLTNEQYATVTQIRKCSTALLRLLNNILDISKVESGKLVLEDAEFDLGRELEGLVD 567
Query: 456 LFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRAC 515
+F + VE VLD SD V+GD ++ QI +NL+SN++KFT+ GHI +R
Sbjct: 568 MFSVQCINHNVETVLDLSDDMP---KLVRGDSARVVQIFANLISNSIKFTTSGHIILRGW 624
Query: 516 VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTG 575
+ +A GN S + Q S K K + A A +++ N M FEVDDTG
Sbjct: 625 CENSNAYGN----SGKFPLNQKASRSALKAKFKQHRNHAKRACKKN-NKMTLWFEVDDTG 679
Query: 576 KGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTC 631
GI K ++VFE++ Q GGTGLGL IV++LV MGG+I++V K + GT
Sbjct: 680 CGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNSP--GTI 737
Query: 632 FRFNVFL 638
+ + L
Sbjct: 738 MQLYLLL 744
Score = 114 bits (286), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 90/155 (58%), Gaps = 14/155 (9%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSG----- 1041
G+ QK L G +IL+A+D+ +L+RVA I L +GATV A +G A+ ++
Sbjct: 1073 GKTVNGQKSLEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAVDALKCMPGAEE 1132
Query: 1042 ------LNDQRDLGAPHI---LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIA 1092
L D R I LPYD ILMDC+MP M+GYEAT+ IR+ E+ +HIPI+A
Sbjct: 1133 SRGKCLLQDGRTRCQTQIHDSLPYDLILMDCQMPKMDGYEATKTIRKSEEGTSLHIPIVA 1192
Query: 1093 LTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
LTAH + K +E GMD +L KP++ ++ I
Sbjct: 1193 LTAHAMSSDEAKCLEVGMDAYLTKPIDYRLMVSTI 1227
>gi|297734988|emb|CBI17350.3| unnamed protein product [Vitis vinifera]
Length = 1168
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 197/367 (53%), Gaps = 14/367 (3%)
Query: 276 IGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTF 335
+G HY + + V + +PRK ++ V + + LI+LI ++ +L+
Sbjct: 388 LGHEHYYIDSFFLNLKRLPMVGVIIIPRKYIMGKVEERALKTLIILISASLCILVIGCVC 447
Query: 336 VFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELC 395
+ KEM L A LI ++A ++AE S KS AN SH++R +A + GL+++
Sbjct: 448 ILILTNGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDIL 507
Query: 396 YVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVD 455
+ +E + Q+ C+ LL LLN+ILD SKVE+GK+ L + +FD+G LE +VD
Sbjct: 508 ICDDCLTNEQYATVTQIRKCSTALLRLLNNILDISKVESGKLVLEDAEFDLGRELEGLVD 567
Query: 456 LFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRAC 515
+F + VE VLD SD V+GD ++ QI +NL+SN++KFT+ GHI +R
Sbjct: 568 MFSVQCINHNVETVLDLSDDMP---KLVRGDSARVVQIFANLISNSIKFTTSGHIILRGW 624
Query: 516 VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTG 575
+ +A GN S + Q S K K + A A +++ N M FEVDDTG
Sbjct: 625 CENSNAYGN----SGKFPLNQKASRSALKAKFKQHRNHAKRACKKN-NKMTLWFEVDDTG 679
Query: 576 KGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTC 631
GI K ++VFE++ Q GGTGLGL IV++LV MGG+I++V K + GT
Sbjct: 680 CGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNSP--GTI 737
Query: 632 FRFNVFL 638
+ + L
Sbjct: 738 MQLYLLL 744
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 90/155 (58%), Gaps = 14/155 (9%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSG----- 1041
G+ QK L G +IL+A+D+ +L+RVA I L +GATV A +G A+ ++
Sbjct: 1006 GKTVNGQKSLEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAVDALKCMPGAEE 1065
Query: 1042 ------LNDQRDLGAPHI---LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIA 1092
L D R I LPYD ILMDC+MP M+GYEAT+ IR+ E+ +HIPI+A
Sbjct: 1066 SRGKCLLQDGRTRCQTQIHDSLPYDLILMDCQMPKMDGYEATKTIRKSEEGTSLHIPIVA 1125
Query: 1093 LTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
LTAH + K +E GMD +L KP++ ++ I
Sbjct: 1126 LTAHAMSSDEAKCLEVGMDAYLTKPIDYRLMVSTI 1160
>gi|255577536|ref|XP_002529646.1| histidine kinase 1 plant, putative [Ricinus communis]
gi|223530872|gb|EEF32733.1| histidine kinase 1 plant, putative [Ricinus communis]
Length = 1206
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 158/538 (29%), Positives = 256/538 (47%), Gaps = 47/538 (8%)
Query: 127 WYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTA 186
WY++P+D TG G+A +P + F + DG S SK D+ L+ A
Sbjct: 251 WYREPLDPTTGNKIGKASEIQPDDLINIAGFSQV---PDGAASWHVAVSKYTDSPLLSAA 307
Query: 187 GINGTRGAVSLGFPVKPITNLFAG-------INLYGGRLSIATNDGKVLVQGI------- 232
S+ V T L++ + ++ G + + + +G +L
Sbjct: 308 LPVWDASNKSIVAVVGVTTALYSVGQLMKELVEVHSGHIYLTSQEGYLLATSTNAPLLRN 367
Query: 233 ----PNTRMTI-VNDSISFQLITNTKTRAQQMNP--VKNVSCTSGNGTLSIGKIHYKAYC 285
P M + D I ++R P V + GN I
Sbjct: 368 SSRGPKLMMAVDSEDDIIRMGAQWLESRYGNKFPHAVHEENAELGNQQYYIDSFFLN--L 425
Query: 286 SQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARK 345
+ + GV + +PR+ ++ V + + L++LI +V +L+ + K
Sbjct: 426 KRLPIVGV-----IIIPRRYIMGKVDERAFKTLVILISASVCILVIGCVCILILTNGVSK 480
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
EM L A LI ++A ++AE + KS AN SH++R +A + GL+++ + +E
Sbjct: 481 EMKLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQ 540
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
+ Q+ C+ LL LLN+ILD SKVE+GK+ L + +FD+G LE ++D+F +
Sbjct: 541 YATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLIDMFSVQCINHN 600
Query: 466 VEVVLDPSDGSVLKFSK-VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN 524
VE VLD SD + K V+GD ++ QI +NL+SN++KFT+ GHI +R + S +
Sbjct: 601 VEAVLDLSD----EMPKLVRGDSARVVQIFANLISNSIKFTTSGHIVLRGWCENISTSND 656
Query: 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRK 584
+ S + + C + +G+ + A + EN + FEVDDTG GI K +
Sbjct: 657 TAKSPLEQ---KKLRCALKTKLRQQGN--HMKKASKKENKVILWFEVDDTGCGIDPSKWE 711
Query: 585 TVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+VFE++ Q GGTGLGL IV++LV MGG+I++V K+NG GT R + L
Sbjct: 712 SVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVV-KKNGP-GTLMRLYLLL 767
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 88/149 (59%), Gaps = 14/149 (9%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV-----------RSG 1041
QK L G +IL+A+D+ +L+RVA I L +GATV A +G A+ + S
Sbjct: 1050 QKALEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAVDALNCRLSGRESRRESV 1109
Query: 1042 LNDQRDLGAPHIL---PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHIS 1098
D+ + +L PYD ILMDC+MP M+GYEAT+ IR+ E + +HIPI+ALTAH
Sbjct: 1110 FQDENNTSQTEMLDPPPYDLILMDCQMPKMDGYEATKAIRKSEAGSGLHIPIVALTAHAM 1169
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ K +E GMD +L KP++ ++ I
Sbjct: 1170 SSDEAKCLEVGMDAYLTKPIDYKLMVSTI 1198
>gi|356502102|ref|XP_003519860.1| PREDICTED: histidine kinase 1-like [Glycine max]
Length = 1193
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 189/348 (54%), Gaps = 14/348 (4%)
Query: 296 VYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIK 355
V + +PRK ++ + + L++LI ++ +++ + KEM L A LI
Sbjct: 410 VGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELIS 469
Query: 356 QMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
+EA ++AE S KS AN SH++R +A + GL+++ + +E + Q+ C
Sbjct: 470 HLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKC 529
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
+ LL LLN+ILD SKVE+GK+ L + +FD+G LE +VD+F + VE VLD SD
Sbjct: 530 STALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDD 589
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
V+GD ++ QI +NL++N++KFT GHI +R + P++ + + L
Sbjct: 590 MP---KLVRGDSARVVQIFANLINNSIKFTLSGHIVLRGWCENPNSCSDNTNFPLEQKKL 646
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+ K + + + A + RD N M FEVDDTG GI K ++VFE++ Q
Sbjct: 647 RCSQ----KTRAKQHENHAKRTSNRD-NKMILWFEVDDTGCGIDPSKWESVFESFEQADP 701
Query: 596 G----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL IV++LV MGG+I++V KE GT R + L+
Sbjct: 702 STTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGS--GTLMRLCLRLS 747
Score = 107 bits (267), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 89/152 (58%), Gaps = 22/152 (14%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR--SGLNDQRD--- 1047
+K L G +IL+A+D+ +++RVA I L +GA V A +G A+ + SG+ D R
Sbjct: 1036 KKSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGRQAVDALNGMSGVEDCRRETL 1095
Query: 1048 -------------LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALT 1094
L P PYD ILMDC+MP M+GYEAT+ IR+ E+ +HIPI+ALT
Sbjct: 1096 LKERNTRSSQTEILSCP---PYDLILMDCQMPKMDGYEATKAIRKSEEGTGLHIPIVALT 1152
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEA 1126
AH + K +E GMD +L KP++ LME+
Sbjct: 1153 AHAMSCDEAKCLEVGMDAYLTKPIDFK-LMES 1183
>gi|356561130|ref|XP_003548838.1| PREDICTED: histidine kinase 1-like [Glycine max]
Length = 1197
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/348 (34%), Positives = 190/348 (54%), Gaps = 14/348 (4%)
Query: 296 VYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIK 355
V + +PRK ++ + + L++LI ++ +++ + KEM L A LI
Sbjct: 410 VGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELIS 469
Query: 356 QMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
+EA ++AE S KS AN SH++R +A + GL+++ + +E + Q+ C
Sbjct: 470 HLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKC 529
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
+ LL LLN+ILD SKVE+GK+ L + +FD+G LE +VD+F + VE VLD SD
Sbjct: 530 STALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDD 589
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
V+GD ++ QI +NL++N++KFT GHI +R + P++ + ++
Sbjct: 590 MP---KLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSCSD----NTNFPLE 642
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+ S K + + + A + RD N + FEVDDTG GI K ++VFE++ Q
Sbjct: 643 KKKSRCSQKTRAKQHENHAKRTSNRD-NKIILWFEVDDTGCGIDPSKWESVFESFEQADP 701
Query: 596 G----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL IV++LV MGG+I++V KE GT R + L+
Sbjct: 702 STTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGP--GTLMRLCLRLS 747
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 97/176 (55%), Gaps = 22/176 (12%)
Query: 969 SSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEAC 1028
S+ + S Y +T +K L G +IL+A+D+ +++RVA I L +GA V A
Sbjct: 1016 STQDEDSEYGETRRASSSSRAVIGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAV 1075
Query: 1029 ENGEAALQ----------LVRSGLNDQRD--------LGAPHILPYDYILMDCEMPIMNG 1070
+G+ A+ +R L +R+ LG P PYD ILMDC+MP M+G
Sbjct: 1076 GDGQQAVDALNGMPGVEDCIRESLLKERNTRSSQTEILGCP---PYDLILMDCQMPKMDG 1132
Query: 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEA 1126
YEAT+ IR+ E +HIPI+ALTAH + K +E GMD +L KP++ LME+
Sbjct: 1133 YEATKAIRKSEVGTDLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFK-LMES 1187
>gi|302793927|ref|XP_002978728.1| hypothetical protein SELMODRAFT_109471 [Selaginella moellendorffii]
gi|300153537|gb|EFJ20175.1| hypothetical protein SELMODRAFT_109471 [Selaginella moellendorffii]
Length = 1086
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 197/380 (51%), Gaps = 48/380 (12%)
Query: 282 KAYCSQF--EVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLI--SMLTFVF 337
K Y F + G+ + + +PR ++ V + LI+L+ + + +L+ +L +F
Sbjct: 365 KFYIDSFYWNLTGLPLIGVILLPRSYVLGDVDDRGRTTLIILVSVAISILVVGCLLILIF 424
Query: 338 KSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYV 397
S + EM L + LIK + A Q+AE S KS AN SH++R +A + GL+++
Sbjct: 425 TSGVST--EMKLRSELIKHLHARQRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLT 482
Query: 398 EAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLF 457
+A E + Q+ C+ LL LLN+ILD SKVE+GK+ L + DF++ LE V+D+F
Sbjct: 483 DACLTVEQIAIVSQIRHCSTALLRLLNNILDLSKVESGKLVLEKVDFNIRHELEAVIDMF 542
Query: 458 HPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVK 517
+ +++VLD +D V+GD + QI +NL+ N++KFTS G+I++R
Sbjct: 543 SVQCV--DIDIVLDLADNVP---QMVRGDLTRTVQIFANLIGNSIKFTSSGYITIR---- 593
Query: 518 KPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTG-K 576
G+ + + + + G +E FEVDD+G
Sbjct: 594 ---------------GWAEPFVSRYEPLEASGGHIE----------KFLLWFEVDDSGCA 628
Query: 577 GIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GI K +TVF+++VQ GGTGLGL IV+SLV MGG+I++V KE E GT
Sbjct: 629 GIDPSKWETVFDSFVQADTSTSRTHGGTGLGLCIVRSLVSKMGGEIKVVKKE--EPGTLM 686
Query: 633 RFNV-FLAIREASANDNNTQ 651
RF + + + E S DN T
Sbjct: 687 RFYLMYDSPFEVSTPDNTTH 706
Score = 115 bits (288), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 4/156 (2%)
Query: 967 GNSSGEGSS--RYKQTEIEE-EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGA 1023
G SS GS ++ E++E D E + + L G IL+A+D+ ++++VA + L+ LGA
Sbjct: 914 GFSSTRGSQDISHRAMELKEYTDEEGKEPRASLTGIHILLAEDTPVIQKVAVVLLKKLGA 973
Query: 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKR 1083
TV A +G+AA++ + L D + P+D ILMDC+MP M+GY ATR+IR+ E+
Sbjct: 974 TVVAVADGQAAVEAWKGSLKDHAVVDEER-KPFDLILMDCQMPRMDGYGATREIRKAEEG 1032
Query: 1084 NQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+ H+PI+ALTAH + ++ +E GMD +L KP++
Sbjct: 1033 SGSHVPIVALTAHAMSSDEERCLEVGMDAYLTKPID 1068
>gi|302787437|ref|XP_002975488.1| hypothetical protein SELMODRAFT_104037 [Selaginella moellendorffii]
gi|300156489|gb|EFJ23117.1| hypothetical protein SELMODRAFT_104037 [Selaginella moellendorffii]
Length = 1086
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 197/380 (51%), Gaps = 48/380 (12%)
Query: 282 KAYCSQF--EVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLI--SMLTFVF 337
K Y F + G+ + + +PR ++ V + LI+L+ + + +L+ +L +F
Sbjct: 365 KFYIDSFYWNLTGLPLIGVILLPRSYVLGDVDDRGRTTLIILVSVAISILVVGCLLILIF 424
Query: 338 KSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYV 397
S + EM L + LIK + A Q+AE S KS AN SH++R +A + GL+++
Sbjct: 425 TSGVST--EMKLRSELIKHLHARQRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLT 482
Query: 398 EAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLF 457
+A E + Q+ C+ LL LLN+ILD SKVE+GK+ L + DF++ LE V+D+F
Sbjct: 483 DACLTVEQIAIVSQIRHCSTALLRLLNNILDLSKVESGKLVLEKVDFNIRHELEAVIDMF 542
Query: 458 HPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVK 517
+ +++VLD +D V+GD + QI +NL+ N++KFTS G+I++R
Sbjct: 543 SVQCV--DIDIVLDLADNVP---QMVRGDLTRTVQIFANLIGNSIKFTSSGYITIR---- 593
Query: 518 KPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTG-K 576
G+ + + + + G +E FEVDD+G
Sbjct: 594 ---------------GWAEPFVSRYEPLEASGGHIE----------KFLLWFEVDDSGCA 628
Query: 577 GIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GI K +TVF+++VQ GGTGLGL IV+SLV MGG+I++V KE E GT
Sbjct: 629 GIDPSKWETVFDSFVQADTSTSRTHGGTGLGLCIVRSLVSKMGGEIKVVKKE--EPGTLM 686
Query: 633 RFNV-FLAIREASANDNNTQ 651
RF + + + E S DN T
Sbjct: 687 RFYLMYDSPFEVSTPDNTTH 706
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 101/156 (64%), Gaps = 4/156 (2%)
Query: 967 GNSSGEGSS--RYKQTEIEE-EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGA 1023
G SS GS ++ E++E D ER + + L G IL+A+D+ ++++VA + L+ LGA
Sbjct: 914 GFSSTRGSQDISHRAMELKEYTDEERKEPRASLTGIHILLAEDTPVIQKVAVVLLKKLGA 973
Query: 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKR 1083
TV A +G+AA++ + L DQ + P+D ILMDC+MP M+GY ATR+IR+ E+
Sbjct: 974 TVVAVADGQAAVEAWKGSLKDQAVVDEER-KPFDLILMDCQMPRMDGYGATREIRKAEEG 1032
Query: 1084 NQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+ H+PI+ALTAH + ++ +E GMD +L KP++
Sbjct: 1033 SGSHVPIVALTAHAMSSDEERCLEVGMDAYLTKPID 1068
>gi|224152027|ref|XP_002337182.1| histidine kinase osmosensor protein [Populus trichocarpa]
gi|222838420|gb|EEE76785.1| histidine kinase osmosensor protein [Populus trichocarpa]
Length = 318
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 168/301 (55%), Gaps = 14/301 (4%)
Query: 316 RALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFA 375
+ L++LI ++ +L+ F+ KEM L A LI ++A ++AE + KS A
Sbjct: 10 KTLVILISASLCILVIGCVFILILTNGVSKEMKLRAELISHLDARRRAEASNNYKSQFLA 69
Query: 376 NASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAG 435
N SH++R +A + GL+++ + +E N+ Q+ C+ LL LLN+ILD SKVE+G
Sbjct: 70 NMSHELRTPMAAVIGLLDILICDDCLTNEQYANVTQIRKCSTALLRLLNNILDLSKVESG 129
Query: 436 KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK-VKGDRVKLKQIL 494
K+ L + +FD+G LE ++D+F + VE VLD SD + K V+GD ++ QI
Sbjct: 130 KLVLEDAEFDLGRELEGLIDMFSVQCINHNVEAVLDLSD----EMPKLVRGDSARVVQIF 185
Query: 495 SNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEA 554
+NL+SN++KFT+ GHI +R + + N + H + + C + G+
Sbjct: 186 ANLISNSIKFTTTGHIILRGWCEN---LNNTYNDTQFHLDQKKMRCAIKPKLRQHGN--H 240
Query: 555 VNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSL 610
+ A + EN M FE+DDTG GI K ++VFE++ Q GGTGLGL IV++L
Sbjct: 241 LKKACKKENKMILWFEIDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTL 300
Query: 611 V 611
V
Sbjct: 301 V 301
>gi|14530758|emb|CAC42409.1| putative osmosensor histidine Kinase [Populus x canadensis]
Length = 331
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 152/265 (57%), Gaps = 16/265 (6%)
Query: 379 HDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQ 438
H++R +A + GL+++ + +E N+ Q+ C+ LL LLN+ILD SKVE+GK+
Sbjct: 1 HELRTPMAAVIGLLDILICDDCLTNEQYANVTQIRKCSTALLRLLNNILDLSKVESGKLV 60
Query: 439 LIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK-VKGDRVKLKQILSNL 497
L + +FD+G LE ++D+F VE VLD SD + K ++GD ++ QI +NL
Sbjct: 61 LEDAEFDLGRELEGLIDMFSVQCTNHNVEAVLDLSD----EMPKLLRGDSARVVQIFANL 116
Query: 498 LSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNA 557
+SN++KFT+ GHI +R + + N + H + + C + +G+ +
Sbjct: 117 ISNSIKFTTTGHIILRGWCEN---LNNTYNDTQFHLDQKKMRCAIKPKLRQQGN--HLKK 171
Query: 558 AQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRL 613
A + EN M FE+DDTG GI K ++VFE++ Q GGTGLGL IV++LV
Sbjct: 172 ACKKENKMILWFEIDDTGCGIDPRKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNK 231
Query: 614 MGGDIEIVDKENGERGTCFRFNVFL 638
MGG+I++V K+NG GT R + L
Sbjct: 232 MGGEIKVV-KKNGP-GTLMRLYLLL 254
>gi|302802654|ref|XP_002983081.1| hypothetical protein SELMODRAFT_117531 [Selaginella moellendorffii]
gi|300149234|gb|EFJ15890.1| hypothetical protein SELMODRAFT_117531 [Selaginella moellendorffii]
Length = 229
Score = 153 bits (387), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 143/265 (53%), Gaps = 45/265 (16%)
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKM 437
SH++R +AGI G++++ + E ET++ Q+ CA LL ++N++LD SKVEAGKM
Sbjct: 5 SHELRTPMAGIIGMLDILSCDT-LTPEQETSVGQIRRCATGLLSMVNNVLDISKVEAGKM 63
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
L F++ LE +VD+F + V+V LD SD +KGD +++QI SNL
Sbjct: 64 DLDLAPFNLASELESLVDMFAAQSYAASVDVALDLSDTIP---QALKGDACRIRQIFSNL 120
Query: 498 LSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNA 557
LSN++KFT GHI +R + P +SS F+ I
Sbjct: 121 LSNSMKFTENGHIVIRGWADE-----KPEISSDGPSFINVI------------------- 156
Query: 558 AQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRL 613
FEVDDTG GIP +TVF+++VQ GG+GLGL IV+SLV+
Sbjct: 157 -----------FEVDDTGCGIPSHMHETVFDSFVQADASSTRIHGGSGLGLYIVRSLVQK 205
Query: 614 MGGDIEIVDKENGERGTCFRFNVFL 638
MGG+++++ K+ GT RFN+ +
Sbjct: 206 MGGEVQVICKQG--PGTLIRFNIVM 228
>gi|302764822|ref|XP_002965832.1| hypothetical protein SELMODRAFT_84050 [Selaginella moellendorffii]
gi|300166646|gb|EFJ33252.1| hypothetical protein SELMODRAFT_84050 [Selaginella moellendorffii]
Length = 229
Score = 153 bits (386), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 143/265 (53%), Gaps = 45/265 (16%)
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKM 437
SH++R +AGI G++++ + E ET++ Q+ CA LL ++N++LD SKVEAGKM
Sbjct: 5 SHELRTPMAGIIGMLDILSCDT-LTPEQETSVGQIRRCATGLLSMVNNVLDISKVEAGKM 63
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
L F++ LE +VD+F + V+V LD SD +KGD +++QI SNL
Sbjct: 64 DLDLAPFNLASELESLVDMFAAQSYAASVDVALDLSDTIP---QALKGDACRIRQIFSNL 120
Query: 498 LSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNA 557
LSN++KFT GHI +R + P +SS F+ I
Sbjct: 121 LSNSMKFTENGHIVIRGWADE-----KPEISSDGPSFINLI------------------- 156
Query: 558 AQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRL 613
FEVDDTG GIP +TVF+++VQ GG+GLGL IV+SLV+
Sbjct: 157 -----------FEVDDTGCGIPSHMHETVFDSFVQADASSTRIHGGSGLGLYIVRSLVQK 205
Query: 614 MGGDIEIVDKENGERGTCFRFNVFL 638
MGG+++++ K+ GT RFN+ +
Sbjct: 206 MGGEVQVICKQG--PGTLIRFNIVM 228
>gi|254413568|ref|ZP_05027338.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196179675|gb|EDX74669.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1315
Score = 151 bits (381), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 48/305 (15%)
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS 403
RK++ L + EA AE + KS AN SH++R L I G +L + +
Sbjct: 830 RKQIELALT-----EAKDAAETANRAKSTFLANMSHELRTPLNAIMGFTQLMQRSSTFPA 884
Query: 404 ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
+ + NL+ + + LL L+N +LD SK+EAG++ L + FD+ LL DV +LF A
Sbjct: 885 DYQENLQIIYRSSEHLLTLINQVLDLSKIEAGRITLNQTVFDLYALLRDVENLFQIKARD 944
Query: 464 KGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG 523
KG++++ D SD V ++ V+ D VKL+Q+L NLLSNA KFT EG ISV
Sbjct: 945 KGLQLLFDYSD-QVPQY--VQTDAVKLRQVLINLLSNAFKFTQEGGISV----------- 990
Query: 524 NPSLSSSRHGFLQSISCLFYKNKKARG-DLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK 582
K +RG D+ A + E + FE++DTG G+ E+
Sbjct: 991 ----------------------KVSRGIDVGETPTANKPEE-ITLQFEIEDTGAGMAAEE 1027
Query: 583 RKTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
+++F+ ++Q K G + GTGLGL I + V+LMGGD+ + + ++GT FRF + +
Sbjct: 1028 LESIFDAFIQSKTGKQHQEGTGLGLSISRKFVQLMGGDLTVASQ--VDQGTVFRFEIRVK 1085
Query: 640 IREAS 644
+ +AS
Sbjct: 1086 LADAS 1090
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ DD + R++ L LG ++ NG+ A+ + ++ PH+ I
Sbjct: 1112 RILIVDDQIDNRQLLIQLLNPLGFLLQEATNGKDAIAIWQNW--------QPHL-----I 1158
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MPIM+GYEAT++I+ + IIA+TA + + G D + KP
Sbjct: 1159 FMDMRMPIMDGYEATQQIKATTQGQAT--AIIAVTASSLDSQKAVILSMGCDGFISKPFR 1216
Query: 1120 RDHLMEAI 1127
+ +AI
Sbjct: 1217 DGEIFDAI 1224
>gi|297819676|ref|XP_002877721.1| hypothetical protein ARALYDRAFT_906322 [Arabidopsis lyrata subsp.
lyrata]
gi|297323559|gb|EFH53980.1| hypothetical protein ARALYDRAFT_906322 [Arabidopsis lyrata subsp.
lyrata]
Length = 148
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Query: 302 PRKGLVSLVHRTSKRALILLIVMTVGVLISM-LTFVFKSARAARKEMHLCASLIKQMEAT 360
P K + + +++ + LI++T+ + L FV+ +A R+EMH+ A LI QMEAT
Sbjct: 3 PNKRGATRIRDQAEKTMYQLIMVTIFFGLGWPLWFVWFMMQATRREMHMRAMLINQMEAT 62
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
QQAERKSMNKS AFANASHD R ALAGI GLI++C E PGS+++T LRQ+NVC+ DL+
Sbjct: 63 QQAERKSMNKSQAFANASHDNRGALAGIKGLIDICRDEVKPGSDVDTTLRQVNVCSKDLV 122
Query: 421 GLLNSILDTSKVEAGKMQLIE 441
LLNS+LD SK+E+GKM L++
Sbjct: 123 VLLNSVLDMSKIESGKMHLVK 143
>gi|383764048|ref|YP_005443030.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381384316|dbj|BAM01133.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 731
Score = 146 bits (368), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 147/279 (52%), Gaps = 41/279 (14%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLG 421
+AE S KS AN SH+IR L + G+ L +++ +E + + LL
Sbjct: 199 EAEAASRAKSEFLANISHEIRTPLNAVIGMTTLL-LDSALTAEQREFAETIRISGEALLS 257
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFS 481
LLN +LD SK+EAG+++L FD + +E+ V LF A KG+E+VL P + VL
Sbjct: 258 LLNDVLDFSKIEAGRLELERIPFDAMKCVEEAVSLFARQASAKGIELVLLPEN--VLP-D 314
Query: 482 KVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCL 541
+V GD V+L+QIL NL++NAVKFT EG I V V+ +A+ +P+ + ++S+ C
Sbjct: 315 RVMGDPVRLRQILINLVNNAVKFTHEGEIVVSVWVEWDAAMSSPAEA------MESVPC- 367
Query: 542 FYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE---- 597
F V DTG GIP E+R +F+ + QV
Sbjct: 368 ------------------------TLRFSVRDTGVGIPAERRGRLFQAFSQVDSSTTRKY 403
Query: 598 GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GG+GLGL I ++L RLMGGD+ V+ E G G+ F F V
Sbjct: 404 GGSGLGLAIARNLCRLMGGDM-WVESEPGV-GSTFFFTV 440
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 17/133 (12%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R IL+ +D+ + ++VA + LR LG T + NG A+ +R+ Y
Sbjct: 603 RPLSILLVEDNPVNQKVALMMLRRLGYTPDLATNGAEAV-----AAQQRRE--------Y 649
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPII-ALTAHISGEEADKTIEAGMDVHLG 1115
D +LMD MP M+G+EA ++IR R Q P+I A+TA ++ + EAGMD +
Sbjct: 650 DLVLMDLHMPEMDGFEAAQRIRRLPLRRQ---PLIYAMTAAVTEADLAGVREAGMDGVIP 706
Query: 1116 KPLNRDHLMEAIK 1128
KP+ + L+ +K
Sbjct: 707 KPVRVEQLIAGLK 719
>gi|224053503|ref|XP_002297846.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|190148359|gb|ACE63262.1| histidine kinase 3A [Populus trichocarpa]
gi|222845104|gb|EEE82651.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1020
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 137/486 (28%), Positives = 225/486 (46%), Gaps = 66/486 (13%)
Query: 320 LLIVMTVGVLIS--MLTFVFKSA--RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFA 375
L I ++G+L+ ++ ++F + R A+ E K ME T+QAE + KS A
Sbjct: 394 LAITTSIGILVIALLIGYIFHATMNRIAKVE----DDCHKMMELTKQAEAADVAKSQFLA 449
Query: 376 NASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND----LLGLLNSILDTSK 431
SH+IR + G+ G++ + ++L+ N + A D L+ L+N +LD +K
Sbjct: 450 TVSHEIRTPMNGVLGMLHMLM-----DTDLDANQQDYVRTAQDSGKALVSLINEVLDQAK 504
Query: 432 VEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLK 491
+E+GK++L E FD+ +++DV+ LF A KG+E+ + SDG + GD + +
Sbjct: 505 IESGKIELEEMQFDLRAIMDDVLALFSGKAHEKGIELAVYVSDGVP---EMLIGDPGRFR 561
Query: 492 QILSNLLSNAVKFTSEGHI--SVRACVKKPSAIGNPSLSSSRHGFL------QSISCLFY 543
QI++NL+ N++KFT +GHI +V + +I + SSS + + SC +
Sbjct: 562 QIITNLMGNSIKFTKKGHIFLTVHPVEEVMDSIDVETESSSLNTLSGLPVADRRRSCAGF 621
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGG 599
K G ++ + D + V+DTG+GIP E + VF ++QV GG
Sbjct: 622 KIFSREGSSHTLSPSSSD--LVNLIVSVEDTGEGIPLEAQPRVFTPFMQVDPSISRKYGG 679
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGG 659
TG+GL I + LV LM G+I + G+ F F R +N N+++ +K+
Sbjct: 680 TGIGLSISKCLVGLMNGEIGFASIP--DTGSTFTFTA--VFRNGCSNSNDSKQQKQRIKN 735
Query: 660 DSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLL--------IAN 711
++ Q M V P P +R N R I + G HV L+ I +
Sbjct: 736 QCNTTPSEFQDMTALVVDPKP---VRANVSRYQI-----QRLGIHVELVSDLNQGLSIIS 787
Query: 712 EERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSS----LGKSDLSSR 767
E R F+E WE+ S + I SS LG S SSR
Sbjct: 788 NENRIFKMIFVEQ--------EVWEKDSSISAHFVNNLQKIERGVSSKLFLLGNSLSSSR 839
Query: 768 SDSESA 773
+++ ++
Sbjct: 840 TNTATS 845
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 14/132 (10%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G+KIL+ DD+ + VA L+ GA V ++G+ A++L++ PH
Sbjct: 891 LVGRKILIVDDNKVNLIVAAAALKKYGAEVICADSGKMAIKLLK----------PPH--Q 938
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D MD +MP M+G+EATR+IR+ E HIPI+A+TA + ++ GMD ++
Sbjct: 939 FDACFMDIQMPEMDGFEATRRIRDMESNG--HIPILAMTADVIQATYEECQRCGMDGYVS 996
Query: 1116 KPLNRDHLMEAI 1127
KP + L + +
Sbjct: 997 KPFEAEQLYQEV 1008
>gi|168010744|ref|XP_001758064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690941|gb|EDQ77306.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 311
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 177/377 (46%), Gaps = 72/377 (19%)
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVE 433
F SH++R +A I GL+++ E E+ +++RQ++ CA L+ +LNS LD +KVE
Sbjct: 2 FFRVSHELRTPMACIIGLLDMLLSEKLL-DEIASSVRQIHRCATSLIAILNSALDIAKVE 60
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQI 493
+GK+ L + +FD+ L ++D+F KG+ + L +D +V K V GD ++ Q+
Sbjct: 61 SGKLVLEKAEFDLEAELTALIDVFSVQCDNKGLFISLQLAD-NVPK--NVVGDSARVMQV 117
Query: 494 LSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLE 553
+NL+ N++KFTS G ISV A + NPS R S S +
Sbjct: 118 FTNLIGNSIKFTSSGRISVSARLATVEDGVNPSRVHRRS--FSSFSLDMFTELPT----- 170
Query: 554 AVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQS 609
+ + FEVDDTG GI R+ VFEN+VQ GGTGLGLGIV+S
Sbjct: 171 --------SDEVIILFEVDDTGPGIEPALRERVFENFVQGDASTTRMHGGTGLGLGIVKS 222
Query: 610 LVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQ 669
LV +MGG+I IV+K G+ F+F +
Sbjct: 223 LVHIMGGNIRIVEKAG--PGSVFQFTICFQ------------------------------ 250
Query: 670 HMNLTVKAPSPSLSIRTNSP-RLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGIN 728
R+ P R+ + P S +G+ VVL I N + R +A +++ G+
Sbjct: 251 ---------------RSLKPERMPYILPSSL-QGAEVVLGIPNADCRAVAAHWVKTWGLK 294
Query: 729 VSAVSRWERLHSTLKRL 745
V WE + ++ L
Sbjct: 295 AHEVGSWEEILIHMRTL 311
>gi|218887540|ref|YP_002436861.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758494|gb|ACL09393.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1177
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 149/285 (52%), Gaps = 31/285 (10%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ-MNVC-- 415
A + ER S KS A +H++R + + G++++ G++L R+ +N+
Sbjct: 258 AQARVERASRAKSEFLAGVTHELRTPMNAVIGMVDITL-----GTDLAPKQREYLNLVRS 312
Query: 416 -ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
A LLG++N +LD SK+EAG++ L F +LLE+V DLFH K +E+V+D
Sbjct: 313 SARSLLGVVNGVLDFSKLEAGRLALEAIPFRTRDLLEEVTDLFHDRLAIKDIELVVDIDT 372
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
G + GD ++L+Q+L NL +NA KFT G + +R +G ++
Sbjct: 373 GVP---PVLVGDPLRLRQVLVNLAANAFKFTERGEVVIR--------VGRADTEANAGAG 421
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY---- 590
++I A G ++ N +E F V DTG GI E R+ +FE+Y
Sbjct: 422 AENI-----PEAPADGTTDSPQTGGAHGNGVELAFSVRDTGIGIAPEARERLFESYSQAD 476
Query: 591 VQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
V V GGTGLGL IV++LV LMGGD+ VD E G RG+ FRF
Sbjct: 477 VSVSRRFGGTGLGLSIVRALVHLMGGDVG-VDSEPG-RGSTFRFT 519
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 35/173 (20%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ-LVRS-----GLN 1043
+Q LRG ++L+ DD+ + R VA L G VEA +GE AL L RS G +
Sbjct: 801 AQPVPDLRGTRVLLVDDNPINRAVATEMLHAAGVEVEAVPSGETALDTLARSVRPAYGPS 860
Query: 1044 DQRDLGAPHI-------------------------LPYDYILMDCEMPIMNGYEATRKIR 1078
+ + G P + +D +L+D +MP M+GY+ IR
Sbjct: 861 EHGEPGEPDRPDGPDGPDGPDRPDGAIVRKTDTQNVAFDAVLLDIQMPGMDGYQTAAAIR 920
Query: 1079 EEEKRNQVHI----PIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ + P+IA TA + GE+ + AG+ L KP++R L+ +
Sbjct: 921 ARNASGGLRLRPGAPVIAFTARVEGEDEEALHRAGIVGRLPKPVDRQELLATL 973
>gi|218888070|ref|YP_002437391.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218759024|gb|ACL09923.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1228
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 146/283 (51%), Gaps = 20/283 (7%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E+ + E S KS AN SH+IR L I GL EL E PG E NLR V A
Sbjct: 577 ESARGLEEASRAKSEFLANMSHEIRTPLNAIIGLTELSLQERLPGDVAE-NLRAALVSAE 635
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLG++N +LD S+VEAGK++L DF L+ V+ + A RKG+ + L D V
Sbjct: 636 ALLGIVNDLLDLSRVEAGKLRLECIDFAPARLVRGVMRVMGHTAERKGLSLTLH-IDRDV 694
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK-PSAIGNPSLSSSRHGFLQ 536
+ ++GD +L+Q+L N +SNA+KFT EG + V C P A+ P S G
Sbjct: 695 PR--HLRGDPGRLRQVLVNFISNAIKFTDEGGVHVAVCRSDGPDAVNAPEAS----GMGG 748
Query: 537 SISCLFYKNKKARGDL--EAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
++C A G + +A + D + F V DTG GIP +K + +FEN+ Q
Sbjct: 749 GVTC---AEPLASGTVFGDASSGLHTDGDTQWLCFSVRDTGIGIPDDKHELIFENFRQAD 805
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFR 633
GG+GLGL I + +MGG I ++D G+ G+ FR
Sbjct: 806 ASTARRYGGSGLGLAICRKFTDMMGGRI-VLDSTPGQ-GSTFR 846
>gi|322417907|ref|YP_004197130.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320124294|gb|ADW11854.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 870
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 146/298 (48%), Gaps = 54/298 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A Q AE S KS AN SH++R + G+ G+++L +++ +E + A
Sbjct: 483 QAKQAAEEASRTKSRFVANMSHELRTPMTGVLGMLDLA-LQSCDETERTDYIETAQRSAR 541
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL +LN +LD +KVEAGK L + F + + VD+ P RKG+E+ L D
Sbjct: 542 SLLRILNDVLDLAKVEAGKFSLDSKPFSLRTCIGQAVDVVMPEVRRKGLELALQIEDHLP 601
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEG--HISVRACVKKPSAIGNPSLSSSRHGFL 535
V GD+V+L+Q+L+NL+ NAVKFT G I++RA + P
Sbjct: 602 ---DHVLGDQVRLRQVLTNLIGNAVKFTERGSVRIALRAGGRSP---------------- 642
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+ MEF F V DTG GIP++KR +F ++ Q+ +
Sbjct: 643 --------------------------QGPMEFRFSVRDTGIGIPQDKRHLLFVSFSQLDD 676
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNN 649
GGTGLGL I + +V MGG I + + E GE G+CF F V L + E +A +
Sbjct: 677 SNTRSYGGTGLGLAISKEIVERMGGSIAL-EGEKGE-GSCFSFTVLLGLAEGAAEKES 732
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 13/123 (10%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
RG+++L+A+D +R+V L VE E+G A+Q + PY
Sbjct: 748 RGRRLLIAEDDPTIRQVLGTMLARFEYQVEYAEDGHQAVQRWQQS-------------PY 794
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D I+MD +MP ++G+EATR IR++E +PI+A+TAH E+ + I AGMD ++ K
Sbjct: 795 DMIIMDVQMPGLDGFEATRAIRQKELERGGRLPILAMTAHAMKEDEQRCIAAGMDDYISK 854
Query: 1117 PLN 1119
P++
Sbjct: 855 PID 857
>gi|148534233|gb|ABQ85241.1| CKI1 [Arabidopsis thaliana]
gi|148534235|gb|ABQ85242.1| CKI1 [Arabidopsis thaliana]
gi|148534237|gb|ABQ85243.1| CKI1 [Arabidopsis thaliana]
gi|148534239|gb|ABQ85244.1| CKI1 [Arabidopsis thaliana]
gi|148534241|gb|ABQ85245.1| CKI1 [Arabidopsis thaliana]
gi|148534243|gb|ABQ85246.1| CKI1 [Arabidopsis thaliana]
gi|148534245|gb|ABQ85247.1| CKI1 [Arabidopsis thaliana]
gi|148534247|gb|ABQ85248.1| CKI1 [Arabidopsis thaliana]
gi|148534249|gb|ABQ85249.1| CKI1 [Arabidopsis thaliana]
gi|148534251|gb|ABQ85250.1| CKI1 [Arabidopsis thaliana]
gi|148534253|gb|ABQ85251.1| CKI1 [Arabidopsis thaliana]
gi|148534255|gb|ABQ85252.1| CKI1 [Arabidopsis thaliana]
gi|148534257|gb|ABQ85253.1| CKI1 [Arabidopsis thaliana]
gi|148534259|gb|ABQ85254.1| CKI1 [Arabidopsis thaliana]
gi|148534261|gb|ABQ85255.1| CKI1 [Arabidopsis thaliana]
gi|148534263|gb|ABQ85256.1| CKI1 [Arabidopsis thaliana]
gi|148534265|gb|ABQ85257.1| CKI1 [Arabidopsis thaliana]
gi|148534267|gb|ABQ85258.1| CKI1 [Arabidopsis thaliana]
gi|148534269|gb|ABQ85259.1| CKI1 [Arabidopsis thaliana]
gi|148534271|gb|ABQ85260.1| CKI1 [Arabidopsis thaliana]
gi|148534273|gb|ABQ85261.1| CKI1 [Arabidopsis thaliana]
gi|148534275|gb|ABQ85262.1| CKI1 [Arabidopsis thaliana]
gi|148534277|gb|ABQ85263.1| CKI1 [Arabidopsis thaliana]
Length = 264
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 161/310 (51%), Gaps = 54/310 (17%)
Query: 711 NEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDS 770
NEERRR+ +K+++NLGI V+ V +WE L L+RL FG SP SS+G+++ S
Sbjct: 1 NEERRRVTEKYIKNLGIKVTVVEKWEHLSYALERL---FG--FSPQSSMGRAECS----L 51
Query: 771 ESASFKEVPLSAMEGTEHKLQGYKRRGA--PSFILLVIDATAGPFLELFNIVAEFRRDLQ 828
S +E+P M+G + + Q KRR + +LLVIDA GPF EL +IV +FRR L
Sbjct: 52 SCPSSRELPFIGMDGIDSRSQLPKRRSISFSAVVLLVIDAKTGPFFELCDIVKQFRRGLP 111
Query: 829 --CNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSK 886
+CKVVWL++ ++R + D +P HGSRL +V+K+LPEFGG K
Sbjct: 112 HGISCKVVWLNESSTR----------VSERGDISCSRPLHGSRLMEVLKMLPEFGGTVLK 161
Query: 887 RHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSR--RDIMPNASVLLKT 944
+ + S +H + +S +H++QEEG SS + + + IM + +T
Sbjct: 162 ---EPPTELQRESLLRHSFVAERS----PKHKVQEEGPSSMFNKKLGKRIMASTDSESET 214
Query: 945 GNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVA 1004
S R+ I GN +E++ + + LRGK++LV
Sbjct: 215 RVKSVRTGRKPI----------GNPE------------DEQETSKPSDDEFLRGKRVLVV 252
Query: 1005 DDSMMLRRVA 1014
DD+ + R+VA
Sbjct: 253 DDNFISRKVA 262
>gi|222055917|ref|YP_002538279.1| histidine kinase [Geobacter daltonii FRC-32]
gi|221565206|gb|ACM21178.1| histidine kinase [Geobacter daltonii FRC-32]
Length = 645
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 153/310 (49%), Gaps = 59/310 (19%)
Query: 349 LCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN 408
L ++ ++ ++ Q AE + KS AN SH++R + GI G+++L +G +LE
Sbjct: 243 LASTYLELEQSRQAAEEGNRAKSQFLANMSHELRTPMNGILGVLQLLL--SGHAGQLEKK 300
Query: 409 LRQMNVCAND----LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK 464
R++ + A LL +++ ILD SK+EAGK+Q+ E+ F + + L D VD F A K
Sbjct: 301 QRELLLKATKSGDLLLQIISDILDLSKIEAGKLQIHEQPFSLRKCLSDAVDYFSSEAQGK 360
Query: 465 GVEVVLD--PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI 522
G+ + L P V VKGD+V+L+Q+L NL+ NAVKFT G + V+A +A
Sbjct: 361 GLHLTLSIAPDVPDV-----VKGDQVRLRQVLLNLIGNAVKFTDHGRVEVKAVTGNKTAT 415
Query: 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK 582
G E TF ++DTG GIP +K
Sbjct: 416 GET----------------------------------------EITFTINDTGIGIPADK 435
Query: 583 RKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ +F ++ QV + GGTGLGL I +V +MGG I D GE G+ F F V L
Sbjct: 436 KHLLFRSFSQVDSSDRRRYGGTGLGLAISSQIVEMMGGRIAF-DSREGE-GSTFFFTVPL 493
Query: 639 AIREASANDN 648
A+ +D+
Sbjct: 494 AVEGEGRDDS 503
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL A+D + + + L G ++ + G+ A+++ G YD I
Sbjct: 525 QILAAEDDALAGELLKQILELFGLEMDLAKTGQEAVEMWEKG-------------HYDLI 571
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+MD +MP M+G ATR IR++E+ HIPIIA+TAH E+ ++ AGMD +L KPL+
Sbjct: 572 IMDVQMPRMDGITATRIIRQKEEAVGGHIPIIAMTAHAYREDEERCYAAGMDGYLTKPLD 631
>gi|373957347|ref|ZP_09617307.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
gi|373893947|gb|EHQ29844.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
Length = 1437
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 173/359 (48%), Gaps = 64/359 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I++ A +AE+ + KS+ A SH+IR + G+ G+ L VE +E +
Sbjct: 908 IQEQAARLEAEKANQAKSVFLATMSHEIRTPMNGVIGMASLL-VETDLNTEQREYAETII 966
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
C + L+ ++N ILD SK+E+GKM + DFD+ +E+V+DLF P +G++++ +
Sbjct: 967 TCGDSLVNVINDILDFSKIESGKMDIEHIDFDLRHSIEEVMDLFGPRVALRGIDLIYEI- 1025
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V + ++ GD ++LKQ+L NL++NA+KFT +G + V+ + K
Sbjct: 1026 DYNVPR--QIIGDSLRLKQVLINLINNAIKFTEKGEVFVKISLLK--------------- 1068
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
Q D ++ F V DTG GIP+EK +F+ + QV
Sbjct: 1069 -------------------------QDDHGGIDLAFTVTDTGIGIPEEKLSNLFKPFSQV 1103
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA------ 643
GGTGLGL I + LV+LMG EI + N +G+ F F++ I A
Sbjct: 1104 DSSTTRKYGGTGLGLVISERLVKLMGD--EIWAESNFGKGSVFSFSIKAEISTAQLKRIQ 1161
Query: 644 -SANDNNTQGEKELAGGDSAAG----DTQLQHMNL---TVKAPSPSLSIRTNSPRLNIL 694
S N + +G+K L D+ TQLQ L T + +L+I N++
Sbjct: 1162 VSVNMDGLEGKKILVVDDNQTNLTILKTQLQQWKLIPVTASSAKEALAILAADNSFNLV 1220
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 16/129 (12%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+++ +++ + L +G T+E NG L+ + + YD IL
Sbjct: 1315 ILVAEDNLINQKLIQRILNKMGYTIEIVANGYEVLEQMM-------------LKTYDVIL 1361
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP M+G E T+ IR+ + + IIA+TA+ E+ + I AGMD ++ KP+
Sbjct: 1362 MDVQMPEMDGLETTQLIRKGKFKQPF---IIAMTANAMLEDKEICISAGMDDYIAKPMKL 1418
Query: 1121 DHLMEAIKY 1129
D L+ +K+
Sbjct: 1419 DELVALLKH 1427
>gi|442609712|ref|ZP_21024446.1| putative two-component hybrid sensor and regulator
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441748728|emb|CCQ10508.1| putative two-component hybrid sensor and regulator
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 1267
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 141/289 (48%), Gaps = 53/289 (18%)
Query: 355 KQMEATQQ-AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
++++ +Q+ AE+ S KS AN SH+IR + G+ G++ L + E LR
Sbjct: 729 EELQKSQEIAEKASKAKSEFLANMSHEIRTPMNGVLGMLNLLR-DTKLNDEQSHKLRLAT 787
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
A +LL +LN ILD SKV+AGK++L DF+ LL ++ + K +E++LD
Sbjct: 788 TSAENLLTILNDILDFSKVDAGKLELEFIDFNPARLLGELAETMALKTSEKQLELILDLR 847
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D L VKGD +L+QIL+NL+ NA+KFT +G + VRAC+K+
Sbjct: 848 D---LPLQFVKGDPSRLRQILNNLIGNAIKFTQQGEVIVRACMKQ--------------- 889
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
++ FT V DTG GI K + +F + Q
Sbjct: 890 ---------------------------EDKGWRFTCSVSDTGIGISKSAQNRLFSAFTQA 922
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + L +LM GDI + KEN G+ F FN+F
Sbjct: 923 DASTTRHFGGTGLGLAICKQLCQLMNGDISLESKEN--EGSTFHFNLFF 969
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 20/125 (16%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D+M+ + VA L + T + NG AL+ ++ P YD +
Sbjct: 1143 RILLVEDNMVNQIVASKMLGQMSLTCDVANNGALALEALKQS--------TP---SYDLV 1191
Query: 1060 LMDCEMPIMNGYEATRKIR-----EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
LMDC+MP M+G+EAT IR E+ K + IIA+TA+ + + +E GM+ ++
Sbjct: 1192 LMDCQMPEMDGFEATTAIRAGIAGEQNKA----VTIIAMTANAMHSDKLRCLEVGMNDYV 1247
Query: 1115 GKPLN 1119
KP+N
Sbjct: 1248 SKPIN 1252
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L+ +LV DD+ R V L + G A ++G AL+ + N +
Sbjct: 984 LKSLHVLVVDDNQTNREVICGQLTNWGIESVAVDSGRQALETLNEYQNKR---------S 1034
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
++ ++D +MP M+G + R IRE+ + + + + ++ + E+ + + G + +
Sbjct: 1035 FNLAILDMQMPSMDGEQLGRAIREQARFDSLKLVMMTSIGQLG--ESHRFADIGFNAYFP 1092
Query: 1116 KPLNRDHLMEAIKYL 1130
KP+ + L A+ L
Sbjct: 1093 KPVTAEDLFNALSLL 1107
>gi|379011380|ref|YP_005269192.1| putative sensor protein [Acetobacterium woodii DSM 1030]
gi|375302169|gb|AFA48303.1| putative sensor protein [Acetobacterium woodii DSM 1030]
Length = 1012
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 152/290 (52%), Gaps = 53/290 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE + KS AN SH+IR L GI G++ L + + E + N++ + C N
Sbjct: 517 AKEEAESANQAKSEFLANMSHEIRTPLNGIVGMVNLMRL-SNLNQEQQENVKIIKTCVNA 575
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N ILD SK+EAGKM++ ++FD+ L+E + +A KG+E+ S S
Sbjct: 576 LLNVINDILDFSKMEAGKMEIKIKNFDIKSLIEHTIKAQSSIATNKGIELNYAFS-ASTP 634
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
++ +KGD +++QIL+NL+SNA+KFT +G I V+ VK S
Sbjct: 635 RY--IKGDFHRIQQILNNLISNAIKFTDDGEIWVK--VKTLSV----------------- 673
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
DEN ++ F V+DTG GI +E R+ +FE++ QV +G
Sbjct: 674 ----------------------DENQVQLLFIVEDTGIGITEENRQRIFESFSQV-DGSF 710
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
GGTGLGL I + LV LMGG I + + + G+ F F + + +A
Sbjct: 711 TRRFGGTGLGLAITRQLVELMGGKIWV--ESEADVGSRFFFQLIFELGQA 758
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 17/136 (12%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
+K R KIL+ +D + + V L+ G +V+ NG A +V+
Sbjct: 770 EKINREYKILLTEDDKINQLVISRMLKECGYSVDIANNGFDAENMVKKN----------- 818
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
YD ILMD +MP M+G EAT++I++ K ++P++A+TA+ + +K + GMD
Sbjct: 819 --NYDIILMDIQMPEMDGMEATKRIKKINK----NVPVLAMTAYALQGDREKFLSLGMDG 872
Query: 1113 HLGKPLNRDHLMEAIK 1128
++ KP+ + L+E I+
Sbjct: 873 YISKPIKVETLVEEIE 888
>gi|300868651|ref|ZP_07113263.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300333345|emb|CBN58455.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 663
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 165/319 (51%), Gaps = 39/319 (12%)
Query: 342 AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
AARK L A L EA ++AE + KS+ AN SH++R+ L I G ++
Sbjct: 164 AARKVDELNAEL---AEAKEKAEVANEAKSIFLANMSHELRSPLNAILGFSQIMTRSKTL 220
Query: 402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
SE N+ ++ LL L+N++LD SK+EAG L E++FD+ LL+D+ D+FH A
Sbjct: 221 PSEHIENVGIISRSGEHLLSLINNVLDLSKIEAGHTTLNEKNFDLYRLLDDLEDMFHLKA 280
Query: 462 MRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
+ ++++ + S V ++ V+ D VKL+QIL NLL+NA+KFT G +SVR S
Sbjct: 281 DDRRLQLIFERS-PDVPRY--VRTDEVKLRQILINLLNNALKFTQVGGVSVRVVTDGGSL 337
Query: 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
+ + E M FEV+D+G GI E
Sbjct: 338 VTGTATK---------------------------QITDESEKTM-LRFEVEDSGPGIAPE 369
Query: 582 KRKTVFENYVQV---KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ ++FE +VQ KE + GTGLGL I + V+LMGG+I V E G GT F+FN+ +
Sbjct: 370 ELDSLFEVFVQTQTGKEAQEGTGLGLPISRKFVQLMGGEIA-VSSEVGS-GTNFKFNIQV 427
Query: 639 AIREASANDNNTQGEKELA 657
+ +AS ++ + +A
Sbjct: 428 NVVDASEIESKQLARRAIA 446
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 17/151 (11%)
Query: 980 TEIEEED-GERSQAQKPLRGK-KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
+EIE + R+ A +P + + +IL+ DD + R++ L G ++ +G+ A+++
Sbjct: 433 SEIESKQLARRAIALEPNQPQYRILIVDDKPLNRQLLIQLLNPFGFALKEAMDGKEAVEI 492
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
D PH+ I MD MP+M+GYEAT++I+ K IIALTA +
Sbjct: 493 A--------DSWEPHL-----IWMDMRMPVMDGYEATKQIKGSTKGQAT--AIIALTASV 537
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
EE + AG D + KP + AI+
Sbjct: 538 LEEERAVILSAGCDDFMRKPFREADIFTAIE 568
>gi|333923713|ref|YP_004497293.1| multi-sensor hybrid histidine kinase [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333749274|gb|AEF94381.1| multi-sensor hybrid histidine kinase [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 1274
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 137/271 (50%), Gaps = 48/271 (17%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH+IR + GI G E+ ++ S+ E ++R + C +LL L+N ILD
Sbjct: 544 KSEFLANMSHEIRTPMNGILGFAEIL-LQTNLNSQQEESVRIIQQCGENLLDLINDILDL 602
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+E+GKM L + F + +L+ + V++ P + KGVE+ + F KGD +
Sbjct: 603 SKIESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISIQKDLPDYF---KGDPTR 659
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
++Q+L+NLLSNA KFT EGH+ V+ +K ++ S +
Sbjct: 660 IRQVLNNLLSNAAKFTHEGHVEVKVNGQKDHSVETDSFT--------------------- 698
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLG 605
F V DTG GIP+EK +FE++ Q GGTGLGL
Sbjct: 699 -----------------LVFSVSDTGIGIPREKLDLIFESFTQADGSTTRKYGGTGLGLT 741
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
I +SL+ LMGG I + + N RG+ F F++
Sbjct: 742 ISRSLINLMGGQITVESEVN--RGSKFSFSI 770
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 15/128 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ +R+ + L G V ENG+ AL+++ +D +L
Sbjct: 1055 VLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEMLNQS-------------NFDIVL 1101
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP+M+GYE TR IR +E+ +PIIALTAH + +K + AG D +L KP+ R
Sbjct: 1102 MDMQMPVMDGYETTRVIRSDERYKS--LPIIALTAHAMKGDNEKCLAAGCDDYLAKPVKR 1159
Query: 1121 DHLMEAIK 1128
D L++ IK
Sbjct: 1160 DILIKTIK 1167
>gi|428312058|ref|YP_007123035.1| ATPase [Microcoleus sp. PCC 7113]
gi|428253670|gb|AFZ19629.1| putative ATPase [Microcoleus sp. PCC 7113]
Length = 2014
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 157/290 (54%), Gaps = 37/290 (12%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE + KS AN SH++R L I G +L E N+ ++
Sbjct: 1521 AKEKAEVANKAKSTFLANMSHELRTPLNAILGFSQLMTRSKTLPPEHIENVGIISRSGEH 1580
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N++LD SK+EAG+ L E +FD+ LL+D+ D+F A KG++++ + + V
Sbjct: 1581 LLTLINNVLDLSKIEAGRTTLNETNFDLYRLLDDLEDMFRFKANDKGLQLICERA-SDVP 1639
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
++ ++ D KL+QIL NLLSNA+KFT +G +SVR + ++
Sbjct: 1640 QY--MRTDETKLRQILINLLSNALKFTKQGGVSVRVGMNNSQSL---------------- 1681
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG-- 596
KA G ++ + + TFE++DTG G+ E+ T+FE +VQ K G
Sbjct: 1682 --------KATGKESGISPKK-----LAITFEIEDTGAGMAAEELDTLFEAFVQTKTGKE 1728
Query: 597 -EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
+ GTGLGL I +S V+LMGG I + + + +GT F+F++ ++ +A++
Sbjct: 1729 SQEGTGLGLPITRSFVQLMGGKITV--RSSVGKGTLFKFDILVSPVDAAS 1776
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 95/226 (42%), Gaps = 32/226 (14%)
Query: 918 EIQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTG------NSSG 971
EI++ G+ + D + A V KTG S EG + S + G +S G
Sbjct: 1700 EIEDTGAGMAAE-ELDTLFEAFVQTKTGKESQEGTGLGLPITRSFVQLMGGKITVRSSVG 1758
Query: 972 EGSSRYKQTEIEEEDGERSQAQKPLRG----------KKILVADDSMMLRRVAEINLRHL 1021
+G+ + D ++P R +IL+ADD R++ L L
Sbjct: 1759 KGTLFKFDILVSPVDAASITTKQPTRQVIALEPNQPRYRILIADDKWSNRQLLIKLLNPL 1818
Query: 1022 GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEE 1081
G + NG+ A+++ D PH+ I MD +MP+M+GYEAT++I+
Sbjct: 1819 GFELREASNGKEAVEI--------WDEWEPHL-----IWMDMQMPVMDGYEATKQIKATI 1865
Query: 1082 KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
K +IALTA EE + AG D + KP + + +
Sbjct: 1866 KGQAT--AVIALTATSLEEERAVVLSAGCDDFIRKPFREADIFDTM 1909
>gi|428202001|ref|YP_007080590.1| signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
gi|427979433|gb|AFY77033.1| signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
Length = 954
Score = 140 bits (354), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 154/290 (53%), Gaps = 35/290 (12%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + AER + KS AN SH++R L I G +L E + + N+ +N
Sbjct: 468 QAKEVAERANRAKSDFLANMSHELRTPLNAILGFSQLLNRETSLTKQQQENIGIINRSGE 527
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +LD +K+E+GKM L DFD+ LL+ + ++ A KG++ +++ S+ +
Sbjct: 528 HLLSLINDVLDLAKIESGKMALYPTDFDLYALLDLIEEMLALRAESKGLQFIIERSN-DL 586
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ + D KL+Q+L NLL NA+KFT EG + +RA S + + SL+
Sbjct: 587 PRY--INTDDKKLRQVLINLLGNAIKFTHEGSVILRAS----SVMSHDSLA--------- 631
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV---K 594
+N K + +N D+ FE++DTG GI E+ T+FE +VQ K
Sbjct: 632 ------RNHKE----QRIN----DQGQTTIYFEIEDTGAGIAPEEIDTLFEAFVQTETGK 677
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
+ + GTGLGL I + V LMGG I + K +G+ F+FN+ + EAS
Sbjct: 678 QSQQGTGLGLPITKKFVELMGGTITVSSKVG--QGSIFKFNIQAQLSEAS 725
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 26/171 (15%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQKPLR----------GKKILVADDSMMLRRVAEINLRH 1020
G+GS + + + + AQKP + +ILV DD R++ L+
Sbjct: 708 GQGSIFKFNIQAQLSEASKITAQKPTQRVIGLEPNQQEYRILVVDDRWENRQLLLKLLQP 767
Query: 1021 LGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREE 1080
G V+ NG+ A+++ +S PH+ I MD MP+MNGYEAT++I+
Sbjct: 768 TGFQVKEASNGQEAIEIWQSW--------QPHL-----IWMDMRMPVMNGYEATQQIK-S 813
Query: 1081 EKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
+ Q + I+ALTA EE + AG D + KP + + E + +YL
Sbjct: 814 HIQGQATV-IVALTASTLEEEKAVILSAGCDDFVRKPFREEVIFEKMAQYL 863
>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
DSM 574]
gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
DSM 574]
Length = 1274
Score = 140 bits (354), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 137/271 (50%), Gaps = 48/271 (17%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH+IR + GI G E+ ++ S+ E ++R + C +LL L+N ILD
Sbjct: 544 KSEFLANMSHEIRTPMNGILGFAEIL-LQTNLNSQQEESVRIIQQCGENLLDLINDILDL 602
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+E+GKM L + F + +L+ + V++ P + KGVE+ + F KGD +
Sbjct: 603 SKIESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISIQKDLPDYF---KGDPTR 659
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
++Q+L+NLLSNA KFT EGH+ V+ +K ++ S +
Sbjct: 660 IRQVLNNLLSNAAKFTHEGHVEVKVNGQKDHSVETDSFT--------------------- 698
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLG 605
F V DTG GIP+EK +FE++ Q GGTGLGL
Sbjct: 699 -----------------LVFSVSDTGIGIPREKLDLIFESFTQADGSTTRKYGGTGLGLT 741
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
I +SL+ LMGG I + + N RG+ F F++
Sbjct: 742 ISRSLINLMGGQITVESEVN--RGSKFSFSI 770
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 15/128 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ +R+ + L G V ENG+ AL+++ +D +L
Sbjct: 1055 VLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEMLNQS-------------NFDIVL 1101
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP+M+GYE TR IR +E+ +PIIALTAH + +K + AG D +L KP+ R
Sbjct: 1102 MDMQMPVMDGYETTRVIRSDERYKS--LPIIALTAHAMKGDNEKCLAAGCDDYLAKPVKR 1159
Query: 1121 DHLMEAIK 1128
D L++ IK
Sbjct: 1160 DILIKTIK 1167
>gi|170076780|ref|YP_001733418.1| two-component hybrid sensor kinase/response regulator
[Synechococcus sp. PCC 7002]
gi|169884449|gb|ACA98162.1| two-component hybrid sensor and regulator; PAS domain S-box protein
[Synechococcus sp. PCC 7002]
Length = 1076
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 133/270 (49%), Gaps = 51/270 (18%)
Query: 371 SLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTS 430
S+ A SH+IR + GI G++ L G +E + + A LL LLN ILD S
Sbjct: 553 SMFLATMSHEIRTPMNGIIGMLNLLLYSEGLTTEQQEHAHIALSSAESLLMLLNDILDFS 612
Query: 431 KVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKL 490
K+EAGK+QL DFD+ + E+ L A KG+ ++ D L+ ++GD +L
Sbjct: 613 KMEAGKLQLETVDFDLHQFFENFAKLMAFAAQEKGLNLIFDLRG---LRHGSIQGDPGRL 669
Query: 491 KQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARG 550
+QIL+NL+SNA+KFT++G + +R
Sbjct: 670 RQILTNLVSNAIKFTNQGEVMIRC------------------------------------ 693
Query: 551 DLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGI 606
+R + ++FT V DTG GI EK +FE + Q++ G GGTGLGL I
Sbjct: 694 ------QTERVGDRLDFTCSVTDTGIGIAAEKLNDLFEPFTQLEAGTTRRYGGTGLGLAI 747
Query: 607 VQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
Q L ++MGG IE++ GE G+CF F +
Sbjct: 748 TQRLCQVMGGTIEVISTP-GE-GSCFTFTL 775
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 990 SQAQKPLRGKKI----LVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQ 1045
SQ +G+KI L+ +D+ + + + + G +V+ G ALQ++++ +Q
Sbjct: 932 SQPSASKQGQKISARLLLVEDNPVNQIIIRGLCQQFGFSVDVAPGGTEALQMLQATPENQ 991
Query: 1046 RDLGAPHILPYDYILMDCEMPIMNGYEATRKI-REEEKRNQVHIPIIALTAHISGEEADK 1104
PY ILMDC MP MNG++ ++ I R IPIIALT + ++
Sbjct: 992 ---------PYRLILMDCLMPKMNGFQTSQHIRRGGGGDRHRQIPIIALTTTLGEANQEQ 1042
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
+ AGM+ +L KPLN L E + +
Sbjct: 1043 YLAAGMNDYLSKPLNPQTLRETLNH 1067
>gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
Length = 923
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 138/271 (50%), Gaps = 59/271 (21%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ----MNV 414
A + AE S KS A SH+IR + G+ G+ EL G+ELE RQ +
Sbjct: 259 AKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTELLL-----GTELEPTQRQFVEAVER 313
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PS 473
LL ++N ILD SK+EAGK++L DFD+ LLE+ ++LF A RKG+E+V D P
Sbjct: 314 SGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLELVADLPP 373
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D ++ V+GD ++L+QI++NLL NAVKFT G I +R V +P
Sbjct: 374 DEKLI----VRGDPLRLRQIVTNLLGNAVKFTETGEILLRLLVVEP-------------- 415
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
RD N ++ V DTG GIP + ++ +FE+++Q
Sbjct: 416 --------------------------RD-NGLKLALVVSDTGIGIPLDAQEKIFEHFLQA 448
Query: 594 K----EGEGGTGLGLGIVQSLVRLMGGDIEI 620
GGTGLGL I + LV +MGG I +
Sbjct: 449 DGSTTRKYGGTGLGLAICRHLVDMMGGRIHV 479
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 14/131 (10%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
+ LRG+ +LVA+D+ VA L +G V A +G+ AL ++
Sbjct: 653 RKLRGR-VLVAEDNESNLVVARAQLERMGLEVIAASDGQQALDILAEE------------ 699
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
D +LMDC+MP+++G+ AT +RE E + H+P+IALTA+ + ++ +AGMD +
Sbjct: 700 -TVDLVLMDCQMPVLDGFAATMALREREAVSGRHLPVIALTANAMKGDRERCKDAGMDEY 758
Query: 1114 LGKPLNRDHLM 1124
L KP + + L+
Sbjct: 759 LAKPYSGEELL 769
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
P G ++LV DDS R V LR G E + A L ++++ + +
Sbjct: 511 PATGARVLVVDDSSTQREVLLALLRGRGFIAEGAASSLAGLSVLKAAVEEGE-------- 562
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
PY +L+D +MP + G + R +R ++ N +I ++A + + + L
Sbjct: 563 PYALLLIDTQMPDLPGCDVVRALRADQ--NLAPTRVIIISAQVDALSKAERASLQIAACL 620
Query: 1115 GKPLNRDHLMEAIK 1128
KP+ + L+ AI+
Sbjct: 621 PKPVRQAELLRAIE 634
>gi|218778728|ref|YP_002430046.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
gi|218760112|gb|ACL02578.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
Length = 1022
Score = 140 bits (353), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 153/296 (51%), Gaps = 54/296 (18%)
Query: 354 IKQMEATQQ---AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR 410
++ +EA Q+ AE S+ KS A SH+IR L + G+ EL E L+ +
Sbjct: 331 LRLLEADQKRQLAEAASLAKSDFLARMSHEIRTPLNAVVGMAELASNEK-MNQNLKKIIE 389
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ +N L+ L+N ILD SK+EA KM+L E FD+G LLED+ D A +KG+E +L
Sbjct: 390 TITSESNALVALVNRILDFSKIEAQKMELEEFPFDLGYLLEDIADSMGLEAYKKGLEFIL 449
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+ + +VKGD +++Q+L+NL+ NA+KFTSEG + V+A
Sbjct: 450 HINPEIPV---QVKGDPGRIRQVLTNLIGNAIKFTSEGEVFVKA---------------- 490
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+LE + DE A+ F + DTG GIP+EKR +FE +
Sbjct: 491 --------------------ELE----TRTDEKAI-IKFHIQDTGIGIPEEKRGLIFEAF 525
Query: 591 VQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
Q + GGTGLG I + +V LMGG+I + +E G+ F F V LA+++
Sbjct: 526 TQADDSTTRKYGGTGLGTTISKKIVELMGGEIGLESREGC--GSIFWFTVVLALQQ 579
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 23/135 (17%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+ +D + +A +L G V ENG+ A++ R +D +
Sbjct: 747 ILLVEDYPANQFIAMEHLTSDGYRVALAENGQKAVEAFRKK-------------TFDLVF 793
Query: 1061 MDCEMPIMNGYEATRKIREEEKRN----------QVHIPIIALTAHISGEEADKTIEAGM 1110
MD +MPIM+GYEAT++IR E N + PIIA+TAH +K +EA M
Sbjct: 794 MDIQMPIMDGYEATKQIRALEAENAGEGNGDGSKKERCPIIAMTAHAFNGYREKCLEADM 853
Query: 1111 DVHLGKPLNRDHLME 1125
D ++ KP+++ L+E
Sbjct: 854 DDYITKPISKKELLE 868
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
GKKILV ++++ R V + L G V+ N E A++ + S Q G L
Sbjct: 594 GKKILVIENNLSYREVIQSYLLSWGGIVDTAPNIEEAIRYLES----QSSQGEKPAL--- 646
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVH--IPIIALTAHISGEEADKTIEAGMDVHLG 1115
I+MD +P + + + KR+ + IP+I LT + K E G+D +L
Sbjct: 647 -IVMDLNLPSLIDLDLAGSL----KRSPLMKGIPLIVLTNVGRMGDGKKCRELGIDGYLA 701
Query: 1116 KPLNRDHLMEAIK 1128
KP+ RD L + ++
Sbjct: 702 KPVRRDDLCKVVR 714
>gi|428769178|ref|YP_007160968.1| Cache sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428683457|gb|AFZ52924.1| Cache sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 899
Score = 140 bits (352), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 146/282 (51%), Gaps = 47/282 (16%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +AE + KS AN SH++R L I G ++ E + ++ +N
Sbjct: 430 EAKDKAEVANQAKSEFLANMSHELRTPLNAILGFAQIMRKSPTLPEEHQESIEIINRSGE 489
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N+ILD SK+EAGK+ L +E+ D+ +LL+++ D+F A +KG+ ++ + D ++
Sbjct: 490 HLLTLINNILDLSKIEAGKITLNKENIDLYKLLDEIEDIFKYKAEKKGIHLIFEKLD-NL 548
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+F +K D KL+QI+ NL+SNA+KFT EG +S++
Sbjct: 549 PQF--IKTDAPKLRQIIINLVSNAIKFTEEGGVSLQGT---------------------- 584
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+N +E +E F + DTGKGI ++ T+F+ + Q K G+
Sbjct: 585 -----------------INKLNNNEKKVELLFIIRDTGKGIKHQELATLFQPFTQTKSGK 627
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GTGLGL I + V LMGG+I++ +EN GT F F V
Sbjct: 628 EVNEGTGLGLSISKKFVELMGGNIKVSSEEN--VGTIFSFTV 667
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KIL+ DD + ++ L+ G ++ NG+ A+++ PH+ I
Sbjct: 697 KILIVDDKEINCQLLVKLLKPFGFELKEANNGKQAVKIWEKW--------QPHL-----I 743
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+M+GYEAT+ I+ K N IIA+TA + EE + AG D + KP
Sbjct: 744 FMDMRMPVMDGYEATKIIKGTTKGNAT--AIIAVTASVLEEEKAIILSAGCDDFVRKPFR 801
Query: 1120 RDHLM 1124
++ +
Sbjct: 802 QETIF 806
>gi|347733498|ref|ZP_08866555.1| HAMP domain protein [Desulfovibrio sp. A2]
gi|347517732|gb|EGY24920.1| HAMP domain protein [Desulfovibrio sp. A2]
Length = 1132
Score = 139 bits (350), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 153/300 (51%), Gaps = 44/300 (14%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ-MNVC-- 415
A + ER S KS A +H++R + + G++++ G++L R+ +N+
Sbjct: 257 ARARVERASHAKSEFLAGVTHELRTPMNAVIGMVDITL-----GTDLSPKQREYLNLVRS 311
Query: 416 -ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
A LLG++N +LD SK+EAG++ L F +LLE+V DLFH K +E+V+D D
Sbjct: 312 SARSLLGVVNGVLDFSKLEAGRLTLESIPFRTRDLLEEVTDLFHDRLAVKDIELVVD-ID 370
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP---SAIGNPSLSSSR 531
V + GD ++L+Q+L NL +NA KFT G + +R + G +L+ +R
Sbjct: 371 TDVPPV--LVGDPLRLRQVLVNLAANAFKFTERGEVVIRVALPATEVGPGEGPDTLADAR 428
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
G A + + F V DTG GI E R +FE+Y
Sbjct: 429 AG--------------------ATPGRPSGMSDVTLAFSVRDTGIGIAPEARARLFESYS 468
Query: 592 Q----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI---REAS 644
Q V GGTGLGL IV++LV+LMGGD++ VD E G RG+ FRF + REA+
Sbjct: 469 QADASVSRRFGGTGLGLSIVRALVQLMGGDVD-VDSEPG-RGSTFRFTARFGLPPEREAA 526
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ-LVRSGLNDQRDLGAPHIL 1054
LRG ++L+ DD+ + R VA L G VE +GE AL L Q G PH L
Sbjct: 774 LRGTRVLLVDDNPINRAVAMEMLTSAGVAVETAPSGEEALAALAHGNGTPQGPGGPPHAL 833
Query: 1055 P-------YDYILMDCEMPIMNGYEATRKIREEEKRNQVHI----PIIALTAHISGEEAD 1103
P +D +L+D +MP M+GY+ IRE N + + P+IA TA + GE+ D
Sbjct: 834 PETLADAPFDAVLLDIQMPGMDGYQVATAIREHGAANGLRLRPGAPVIAFTARVEGEDED 893
Query: 1104 KTIEAGMDVHLGKPLNRDHLMEAIK 1128
AG+ L KP+ R L+ ++
Sbjct: 894 ALRRAGIATRLPKPVERGELLSTLR 918
>gi|90022133|ref|YP_527960.1| ribosomal-protein-alanine acetyltransferase [Saccharophagus
degradans 2-40]
gi|89951733|gb|ABD81748.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
2-40]
Length = 1109
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/326 (35%), Positives = 159/326 (48%), Gaps = 58/326 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
++ + A +AE S KS A SH+IR + G+ G++ L + + E E L
Sbjct: 403 LELLAAKNEAESSSRAKSEFLACMSHEIRTPMNGVLGMLGLV-LNSSLTPEQERKLLLAQ 461
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
LL ++N ILD SKVEAGK++L DFD LL DVV F+ A KG+E+VLD
Sbjct: 462 SSGQSLLSVINDILDYSKVEAGKLELEHLDFDPHRLLSDVVQSFNYSAQEKGIELVLDDI 521
Query: 474 --DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
G VL +GD +L+QI++NLLSNA+KFTS+G I VRA L S
Sbjct: 522 GLGGKVL-----RGDPSRLRQIINNLLSNALKFTSQGEIIVRA-----------KLDSEI 565
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
+G L + C V DTG GIP +K +F+++
Sbjct: 566 NG-LNQLRC-----------------------------SVTDTGIGIPSDKISGLFDSFT 595
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
QV GGTGLGL I + L R+MGGDI +V E G +GT F F V + D
Sbjct: 596 QVDSSTTRRYGGTGLGLSICKMLTRIMGGDIFVV-SEVG-KGTRFDFVVHVETGSCLPVD 653
Query: 648 NNTQGEKELAGGDSAAGDTQLQHMNL 673
N E ++ G + D L ++++
Sbjct: 654 N---AESDVTGLNVLLVDDNLTNLDV 676
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 10/129 (7%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D+++ ++V L G ++G+ A+ ++ D R Y ++
Sbjct: 820 RILVVEDNLVNQQVIAGILEDFGLAFTLVDDGQQAISALKENTGDLR---------YHFV 870
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHI-PIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MDC+MP+++GY AT++IRE + I PI+ALTA+ + DK + AGM+ ++ KP+
Sbjct: 871 FMDCQMPVLDGYNATKQIREGAAGEECKIVPIVALTANAMQGDRDKCLRAGMNDYVAKPV 930
Query: 1119 NRDHLMEAI 1127
+ D + A+
Sbjct: 931 DADEVRLAL 939
>gi|434393557|ref|YP_007128504.1| Cache sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428265398|gb|AFZ31344.1| Cache sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 925
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 151/298 (50%), Gaps = 45/298 (15%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA Q AE + KS AN SH++R L + G L +A +E NL+ +N
Sbjct: 447 EAKQAAEAANRAKSEFLANMSHELRTPLNAVLGFTTLMNQDASLTAEQRENLKIINRSGE 506
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +LD +K+EAG++ L +++FD+ LL+ + ++F A KG+++ ++ +
Sbjct: 507 HLLTLINDVLDMAKIEAGRITLNKKNFDLYSLLDTIEEMFSCKAQLKGLQLQIEHT---- 562
Query: 478 LKFSK-VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
L+ + + D +KL+QIL NL+ NA+KFT EG++ +R
Sbjct: 563 LEVPRYINSDEIKLRQILINLVGNAIKFTQEGYVFLRVTT-------------------- 602
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+E + + FEV+DTG GI + + +F+ +VQ + G
Sbjct: 603 ---------------VENQDTTPKPTPQTTLHFEVEDTGIGIAAHETEMLFKPFVQTETG 647
Query: 597 ---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
E GTGLGL I V+LMGG I + K +GT F+F++ + + EA++ + TQ
Sbjct: 648 RKSEQGTGLGLAITHKFVQLMGGAITLSSKLG--KGTIFQFDIPVELAEATSQETETQ 703
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 15/129 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD + +RR+ + L ++G V ENG+ A+ L ++ PH +I
Sbjct: 716 RILVVDDHLAMRRILKQTLTNIGFEVREAENGQDAIAL--------WNIWEPH-----FI 762
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD MPI++GYEAT+ I+ + K Q I I+A TA +E + G D + KP
Sbjct: 763 LMDMRMPIVDGYEATQYIKSQPK-GQSTI-IVAFTASAFEQERATVLATGCDDFIRKPFR 820
Query: 1120 RDHLMEAIK 1128
+ + E +K
Sbjct: 821 EEVIWEKLK 829
>gi|395226150|ref|ZP_10404647.1| PAS domain S-box [Thiovulum sp. ES]
gi|394445654|gb|EJF06541.1| PAS domain S-box [Thiovulum sp. ES]
Length = 1429
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 158/300 (52%), Gaps = 55/300 (18%)
Query: 339 SARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVE 398
S R +E L + +I A + AE+ + KS+ AN SH+IR L GI GL EL ++
Sbjct: 705 SVRDVTEEKILQSEIII---AKESAEKGNRAKSVFLANMSHEIRTPLNGIIGLTELV-LD 760
Query: 399 AGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFH 458
+E L++ + +N LL ++N ILD SK+EAGK+ ++++ F++ ELLE++ +LF
Sbjct: 761 TELTNEQREYLQKAKLSSNALLNVINDILDYSKIEAGKLDIVKQKFELDELLENITNLFS 820
Query: 459 PVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK 518
+A KG+E + F + GD +++ QIL+NL+ NA+KFT +G +S+
Sbjct: 821 LLANNKGLEFLFFIEKD--FHFDLI-GDSLRITQILTNLIGNAIKFTEKGLVSL------ 871
Query: 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
+VN +RDE M F+++D+G GI
Sbjct: 872 -----------------------------------SVNILERDE-KMTLLFQIEDSGIGI 895
Query: 579 PKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
+E +K +F+++ Q + GGTGLGL I + L++LMGGDI + + N GT F F
Sbjct: 896 SEENQKKLFQSFEQGDQSNTKKYGGTGLGLMISKQLLKLMGGDIWV--ESNLGIGTKFIF 953
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 17/129 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K++L+A+D+ + VA +++G + NGE A++L + H +D
Sbjct: 1108 KRVLIAEDNETNQIVASNIFKNMGFHFKIANNGEEAVKLSKE----------EH---FDI 1154
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
I MD +MP ++G EA+R+IR + IPIIAL+A + + + ++ AGM+ HL KP+
Sbjct: 1155 IFMDIQMPKLDGLEASREIR----NLGITIPIIALSAAVMKSDVELSLSAGMNGHLVKPI 1210
Query: 1119 NRDHLMEAI 1127
++ L + I
Sbjct: 1211 DKKALFDTI 1219
>gi|224029415|gb|ACN33783.1| unknown [Zea mays]
gi|413938768|gb|AFW73319.1| putative histidine kinase family protein [Zea mays]
Length = 974
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 160/352 (45%), Gaps = 45/352 (12%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
I +G + + + A A + + K E QAE + KS A SH+I
Sbjct: 312 ITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATVSHEI 371
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGLLNSILDTSKVEAGKM 437
R + G+ G++++ G++L + +C L+ L+N +LD +K+EAGK+
Sbjct: 372 RTPMNGVLGMLDMLL-----GTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKL 426
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
+L FD+ L++DVV LF + K +E+ + D +V K V GD + +QIL+NL
Sbjct: 427 ELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD-NVPKV--VIGDPWRFRQILTNL 483
Query: 498 LSNAVKFTSEGHISVRACVKKPSAI-GNPSL--------------------------SSS 530
+ NAVKFT GH+ VR C+ + S + N L ++
Sbjct: 484 VGNAVKFTERGHVFVRVCLAENSNVEANQVLHGAMNGKGGRVESTTNGAFNTLSGFEAAD 543
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
R Q L + DLE N+ Q D N + ++DTG GIP + + VF +
Sbjct: 544 RRNSWQYFKLLLSDKESLLDDLEGENSNQSDSNHVTLAISIEDTGVGIPLQAQDRVFTPF 603
Query: 591 VQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+Q GGTG+GL I + L LMGG I + G+ F F+ L
Sbjct: 604 MQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPS--VGSTFTFSATL 653
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 29/152 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + RVA L+ GA V E+G+ A+ L L PH
Sbjct: 826 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISL----------LQPPH--R 873
Query: 1056 YDYILMDCEMPIMNGYEATRKIRE------EEKRNQV-----------HIPIIALTAHIS 1098
+D MD +MP M+G+EAT +IR+ EE++N++ H+P++A+TA +
Sbjct: 874 FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVI 933
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
++ I++GMD ++ KP + + L +A+ L
Sbjct: 934 QATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 965
>gi|162459625|ref|NP_001104859.1| histidine kinase 1 [Zea mays]
gi|12060392|dbj|BAB20583.1| histidine kinase 1 [Zea mays]
Length = 974
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 162/352 (46%), Gaps = 45/352 (12%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
I +G + + + A A + + K E QAE + KS A ASH+I
Sbjct: 312 ITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEI 371
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGLLNSILDTSKVEAGKM 437
R + G+ G++++ G++L + +C L+ L+N +LD +K+EAGK+
Sbjct: 372 RTPMNGVLGMLDMLL-----GTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKL 426
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
+L FD+ L++DVV LF + K +E+ + D +V K V GD + +QIL+NL
Sbjct: 427 ELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD-NVPKV--VIGDPWRFRQILTNL 483
Query: 498 LSNAVKFTSEGHISVRACVKKPSAI-GNPSL--------------------------SSS 530
+ NAVKFT GH+ VR C+ + S + N L ++
Sbjct: 484 VGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAAD 543
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
R Q L + DLE+ N+ Q D + + ++DTG GIP + + VF +
Sbjct: 544 RRNSWQYFKLLLSDKESLLDDLESENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPF 603
Query: 591 VQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+Q GGTG+GL I + L LMGG I + G+ F F+ L
Sbjct: 604 MQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPS--VGSTFTFSATL 653
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 29/152 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + RVA L+ GA V E+G+ A+ L L PH
Sbjct: 826 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISL----------LQPPH--R 873
Query: 1056 YDYILMDCEMPIMNGYEATRKIRE------EEKRNQV-----------HIPIIALTAHIS 1098
+D MD +MP M+G+EAT +IR+ EE++N++ H+P++A+TA +
Sbjct: 874 FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVI 933
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
++ I++GMD ++ KP + + L +A+ L
Sbjct: 934 QATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 965
>gi|428319759|ref|YP_007117641.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428243439|gb|AFZ09225.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1700
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 154/299 (51%), Gaps = 55/299 (18%)
Query: 357 MEATQQAERKSMN----KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL--- 409
E QQA ++ KSL AN SH+IR + G+ G+ +L L+TNL
Sbjct: 1005 FEQAQQAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLL---------LKTNLTPE 1055
Query: 410 -----RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK 464
+ + + +LL ++N ILD SK+EAG+M+L +F++ + +V+DL A K
Sbjct: 1056 QLDFVQTLKLSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEK 1115
Query: 465 GVEVV-LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG 523
G+EVV L SD V ++KGD +L+QIL+NL++NA+KFT G + + +
Sbjct: 1116 GIEVVALIDSDVPV----QIKGDAARLRQILTNLINNAIKFTEAGEVVIEV-----ANAS 1166
Query: 524 NPSL--SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
NP L +S L++I L +N DL M F+V DTG GI E
Sbjct: 1167 NPGLLAASENQKILENIEKLKIEN----NDL------------MLLLFKVTDTGIGIAPE 1210
Query: 582 KRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+K +F+++ QV GGTGLGL I + LV LMGG I + + +G+ F F V
Sbjct: 1211 DKKKLFQSFTQVDASTTRKYGGTGLGLAISKELVELMGGQIGV--ESTPGQGSTFWFTV 1267
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 20/137 (14%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
+ L KIL+ +D+ + ++V LR LG T + NG AL +V +
Sbjct: 1438 RELASLKILLVEDTPINQKVGLNQLRVLGCTADVANNGAEALSMV-------------AL 1484
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQV-------HIPIIALTAHISGEEADKTI 1106
YD +LMDC+MP+++GYEATR++R E + +IA+TA+ + +K +
Sbjct: 1485 KKYDIVLMDCQMPVLDGYEATRELRRREAADAAGNMEPHQKTVVIAMTANALKGDREKCL 1544
Query: 1107 EAGMDVHLGKPLNRDHL 1123
AGMD ++ KP++ + L
Sbjct: 1545 AAGMDDYISKPISIEKL 1561
>gi|403380383|ref|ZP_10922440.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JC66]
Length = 755
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 144/286 (50%), Gaps = 50/286 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A Q AE + KS A SH+IR + GI G+ +L E L+ +
Sbjct: 363 LQAKQTAEATNQAKSEFLAMLSHEIRTPMNGIIGMTDLLLETTSINEEQLEYLKIIRKSG 422
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+ LL ++N ILD SK+++GK +L+ E FD+ E +V+DL P A+ KG+ + L D S
Sbjct: 423 HTLLAIINDILDFSKIDSGKTELVHEVFDLKECFHEVIDLLTPSALEKGLPIHL-TIDES 481
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ + KVKGD +LKQ++ NL+ N++KFT G +SV VK+
Sbjct: 482 LPE--KVKGDAKRLKQVVLNLVGNSIKFTLHGSVSVH--VKR------------------ 519
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV--- 593
+ C ++ EV DTG GIP++KR +FE + QV
Sbjct: 520 KLQCC---------------------GKVQLLVEVSDTGLGIPEDKRDRLFEPFYQVDAF 558
Query: 594 -KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
K GTGLGL I + LV+LMGGDI +V + G+ F+F V L
Sbjct: 559 MKRETEGTGLGLAISKKLVQLMGGDIWLV--PDSSPGSTFQFTVLL 602
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 22/136 (16%)
Query: 997 RGKKILVADD----SMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
R +IL+A+D M+LR++ + N+ H A VE NG ++V+ LN++
Sbjct: 625 RRLRILIAEDHPINQMVLRKMLD-NMGHHTAVVE---NGA---EVVKEALNNK------- 670
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
YD I MD MP+MNG EA +RE + + I+A+TA+ + +K + +GMD
Sbjct: 671 ---YDLIFMDVHMPLMNGIEAAVTLRETLGEKECPV-IVAVTANALKGDREKYLASGMDD 726
Query: 1113 HLGKPLNRDHLMEAIK 1128
+L KP+ +ME I+
Sbjct: 727 YLSKPITSGRVMEVIR 742
>gi|386394368|ref|ZP_10079149.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385735246|gb|EIG55444.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1526
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 157/299 (52%), Gaps = 30/299 (10%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA + AE S KS AN SH+IR L+GI G+ +L + A P L + A
Sbjct: 1120 LEAKRTAEDASQAKSEFLANMSHEIRTPLSGIIGMTDLL-LGADPNERQRLYLESIQESA 1178
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+ L+ ++N ILD SK+EA K++L E+ FD+ ++++ + F P+A +KG+ + G
Sbjct: 1179 DSLMAIINDILDFSKIEARKLELQEQPFDLAQIMDATLKGFKPLAEKKGLALTTFVHSGV 1238
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ + GD V+LKQIL NL+ NA+KFTS+G + ++ +G +L + F +
Sbjct: 1239 P---TDLFGDPVRLKQILVNLVGNAIKFTSKGGVDIQ--------VGTLNLPDEMNIFPK 1287
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+ N D V+ + F V DTG GIP + ++++F + Q
Sbjct: 1288 RPT-----NGPPPDDASRVSRVR-------LLFSVRDTGIGIPLKNQQSIFGMFSQGDVG 1335
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
K+ GTGLGL I +SL+ +M G+I +V +E +G+ F +V L I+ + T+
Sbjct: 1336 TKKQYAGTGLGLSITKSLITMMDGNIWVVSQEG--KGSTFYCSVLLKIQNQHGSKTTTE 1392
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 26/160 (16%)
Query: 961 SVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRH 1020
SVLLK N G +T EE A P R KIL+A+D+ + R + LR+
Sbjct: 1376 SVLLKIQNQHG------SKTTTEE------AAPAPGRPLKILLAEDNPINRLFLQELLRN 1423
Query: 1021 LGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR-E 1079
G T++ +G+ AL+ +++ +D +LMD MP M+G EATR+IR
Sbjct: 1424 DGHTIKPAVDGQEALEALQNEA-------------FDLVLMDISMPGMDGIEATRRIRGS 1470
Query: 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+ IPIIALTAH E+ ++ ++AGMD +L KP++
Sbjct: 1471 VSDKIDAKIPIIALTAHAFREDEERFLKAGMDGYLSKPID 1510
>gi|239625873|ref|ZP_04668904.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520103|gb|EEQ59969.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 840
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 171/367 (46%), Gaps = 70/367 (19%)
Query: 291 AGVKSVYALAMPRKG-----LVSLVHRTSKRALILL----IVMTVGVLISMLTFVFKSAR 341
G + Y MP +G + S+ + R ++ L + + VG+ + +LT V
Sbjct: 238 VGNRHDYIYYMPIQGTDWYMVTSMAYEIVNRQILYLSQFMVTVCVGIFLIILTTVLAFFL 297
Query: 342 AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
R L + L+ + ++AE + KS + SH+IR L GI G+ EL G
Sbjct: 298 LLRHREKLSSELL--LAEKERAEAANRAKSDFLSQMSHEIRTPLNGIMGMAELGKSHTGE 355
Query: 402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
+ L ++ + + LL L+N ILD SK+E+GK++L E FD+G+LL + +FH A
Sbjct: 356 PDRMRNCLDKITLSSTHLLSLINDILDMSKIESGKIELHMERFDLGQLLRALTTVFHVQA 415
Query: 462 MRKGVEVVLDPSDGSVLKFSKVK----GDRVKLKQILSNLLSNAVKFT-SEGHISVRACV 516
+ + + D + + +++ GD ++L QIL+NLLSNA+KFT ++G +S+
Sbjct: 416 VSRQI-------DYHIFLYGEIEEYLTGDSLRLNQILTNLLSNALKFTPAQGQVSLN--- 465
Query: 517 KKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGK 576
V+ +RDE+ + FEV DTG+
Sbjct: 466 --------------------------------------VSELRRDESGIWLRFEVRDTGR 487
Query: 577 GIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GI E VFE + Q G GGTGLGL I ++ V +MGG I + K G+ F
Sbjct: 488 GIAPENIDRVFEAFTQENSGIARQYGGTGLGLPITKNFVEMMGGSITVSSKVGA--GSIF 545
Query: 633 RFNVFLA 639
++ A
Sbjct: 546 TVDIPFA 552
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G+++LV +D+ + +A L GA V NG+ A++ R AP
Sbjct: 704 LNGEQVLVVEDNEINLYIAVALLEDAGAIVTTASNGQEAVKRFRE---------APEGF- 753
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
Y ILMD +MP+M+GY ATR IR + + IIA+TA+ E+ K +++GMD H+
Sbjct: 754 YKLILMDVQMPVMDGYSATRAIRALPRSDAKRAIIIAMTANSFHEDIQKCLDSGMDAHIA 813
Query: 1116 KPL 1118
KP
Sbjct: 814 KPF 816
>gi|118580297|ref|YP_901547.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
2379]
gi|118503007|gb|ABK99489.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
2379]
Length = 604
Score = 137 bits (346), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 156/315 (49%), Gaps = 55/315 (17%)
Query: 338 KSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYV 397
++A+A R E + SL ++ EA + A R K AN SH++R + G+ G+++L +
Sbjct: 192 ETAKALRLEKEISESLRREKEAAESATRA---KDQFLANMSHELRTPMTGVLGMLQLA-L 247
Query: 398 EAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLF 457
E L L + AN LL +LN ILD +K+EAGK+ + E F + VD+
Sbjct: 248 EEELAPTLRNYLGTAHSSANSLLQILNDILDMTKIEAGKIIIEEMPFSPRRCVTGAVDII 307
Query: 458 HPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVK 517
P RKG+++ + ++ K+ GD+++L+Q+L NL++NAVKFT+EG ++V+
Sbjct: 308 TPEVRRKGLDIAISVAEEVP---DKLVGDQMRLRQVLINLIANAVKFTNEGKVAVQVTAG 364
Query: 518 KPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKG 577
++ G E+TF V DTG G
Sbjct: 365 GTNSDGK----------------------------------------REYTFAVTDTGIG 384
Query: 578 IPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFR 633
IP++K+ +F + QV GGTGLGL I + LV LMGG I+ KE G+ F
Sbjct: 385 IPEDKKDLLFHVFSQVDASHTRTYGGTGLGLAICKELVELMGGMIDFDSKEG--VGSTFY 442
Query: 634 FNVFLAIREASANDN 648
F + ++REA + N
Sbjct: 443 FTI--SLREAKSERN 455
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 91/173 (52%), Gaps = 26/173 (15%)
Query: 968 NSSGEGSSRYKQTEIEEEDGERS--QAQKPL--------RGKKI---LVADDSMMLRRVA 1014
+ G GS+ Y + E ER+ A +PL +G++I L+A+D ++++
Sbjct: 433 SKEGVGSTFYFTISLREAKSERNAPTAAEPLSPETFTAPKGERIPHLLLAEDDPTIQQIL 492
Query: 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074
E+ L +++ ++G+ A+++ G YD +LMD +MP+++G++ T
Sbjct: 493 EMMLTKSNYSLDIAKDGKQAVEMWEQG-------------EYDLVLMDVQMPLLSGFDVT 539
Query: 1075 RKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
IRE E+ H PI+A+TAH E K I AGMD ++ KP++ + ++ I
Sbjct: 540 LAIRERERERGGHTPIVAMTAHTGKEAEKKCIAAGMDHYISKPIDFNECLKLI 592
>gi|428318926|ref|YP_007116808.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428242606|gb|AFZ08392.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 856
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 177/388 (45%), Gaps = 62/388 (15%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET--NLRQMNVCANDLLGLLNSIL 427
KS AN SH++R L I G ++ +E P +E N+R + LL L+N +L
Sbjct: 322 KSTFIANMSHELRTPLNSILGFAQI--MEPSPDLTVENRENMRIIRRSGEHLLTLINEVL 379
Query: 428 DTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDR 487
D SK+EAG+M L ++FD+ LL+D+ D+F + +++ D V ++ V+ D
Sbjct: 380 DLSKIEAGRMTLNPKNFDLYRLLDDLQDMFQLRVHNEELQLHFQ-RDADVPQY--VRTDD 436
Query: 488 VKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCL-FYKNK 546
+KL+Q+L NLLSNA+KFT G I +R + S + L S + F + S F +
Sbjct: 437 IKLRQVLINLLSNAIKFTQTGEIILRVIKLEKSGFLD-LLDSPKACFDTTRSIRDFSRTS 495
Query: 547 KARGDLEAVNAAQRDENAMEF--TFEVDDTGKGIPKEKRKTVFENYVQVKEG---EGGTG 601
+E + A+ D +F FE++DTG GI E+ +F+ +VQ G + GTG
Sbjct: 496 SDFAKVECSDEAE-DSTVPDFFLLFEIEDTGVGIASEELGNIFKAFVQTASGQKIQKGTG 554
Query: 602 LGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDS 661
LGL I + VRLMGG EIV + E GT F+F E+ G
Sbjct: 555 LGLKISRQFVRLMGG--EIVVESQLELGTTFKF--------------------EIPVGAV 592
Query: 662 AAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKF 721
A D +N V P N P IL R E+ R++ K
Sbjct: 593 YAADIPDPQLNREVSGLEP------NQPCYRILIVDDR------------EDNRQLLVKM 634
Query: 722 MENLGINV-------SAVSRWERLHSTL 742
+ LG V A+ WE H L
Sbjct: 635 LSPLGFGVEQATNGQEAIELWENWHPHL 662
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 37/155 (23%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ DD R++ L LG VE NG+ A++L + PH+ I
Sbjct: 617 RILIVDDREDNRQLLVKMLSPLGFGVEQATNGQEAIELWENW--------HPHL-----I 663
Query: 1060 LMDCEMPIMNGYEATRKIREE---------------EKRNQVHIP-IIALTAH-ISGEEA 1102
LMD MP+M+GYEAT++I+ + IP IIALTA I G +A
Sbjct: 664 LMDVRMPVMDGYEATKQIKARIKQREQEQQEKEEMNLDEPESPIPKIIALTASTIEGRQA 723
Query: 1103 DKTIEAGMDVHLGKPLNRDHLMEAI------KYLH 1131
+ G D + KP + + + I KYL+
Sbjct: 724 FALL-VGCDDFISKPFRKTDIFDTINKHLGVKYLY 757
>gi|428320718|ref|YP_007118600.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
gi|428244398|gb|AFZ10184.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
Length = 2192
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 151/299 (50%), Gaps = 52/299 (17%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
+ + + + L +I++ A A+ + KS AN SH++R L I G +L +
Sbjct: 1687 QVSDRTLELQREIIERQRAEDAAQAANRAKSTFLANMSHELRTPLNAILGFSQLLNRSSN 1746
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
E + +L + LL L+N +LD SK+EAG+ L + +FD+ LL+D+ ++F
Sbjct: 1747 LLQEQQEHLNIITRSGEHLLELINQVLDLSKIEAGRATLNQTNFDLHRLLDDIENMFQLP 1806
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
A KG++++++ G V ++ V+ D +KL+QIL NL+SNA+KFTSEG I V+
Sbjct: 1807 AQNKGLQLLVERMVG-VPQY--VRTDEIKLRQILINLISNAIKFTSEGGIYVK------- 1856
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
I N L A + FEV+DTG GI
Sbjct: 1857 -IKNSEL------------------------------------AHQIYFEVEDTGAGIDA 1879
Query: 581 EKRKTVFENYVQVKEGE---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ +FE +VQ K GE GTGLGL I +S V+LMGG++ + + GT F+F++
Sbjct: 1880 SELDKIFEAFVQTKTGEESQQGTGLGLTIARSFVQLMGGEMTVSSRAGC--GTIFKFDI 1936
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 36/173 (20%)
Query: 978 KQTEIEEEDGERSQAQKPLRG-------KKILVADDSMMLRRVAEINLRHLGATVEACEN 1030
K +E D +R Q + + +ILVADD+ R++ L +G V +N
Sbjct: 1937 KVNSVESADRQREQPTRRVMAIAPNQPRYRILVADDAFDNRQLLVKLLSAIGFEVYEAKN 1996
Query: 1031 GEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKR------N 1084
G A+ ++ + +PH+ I MD MP+M+GYEAT++I+E R N
Sbjct: 1997 GREAI--------EKWEQYSPHL-----IFMDMRMPVMDGYEATKQIKEGNHRGIAPTEN 2043
Query: 1085 QVHI----------PIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ + IIA+TA EE + G D + KP ++ + +
Sbjct: 2044 EDFVGVVPPCLPQTAIIAITASSFEEEKAVVLSTGCDDFIRKPFREANIFDVL 2096
>gi|158521107|ref|YP_001528977.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
gi|158509933|gb|ABW66900.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
Length = 1721
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 155/299 (51%), Gaps = 38/299 (12%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL-----RQM 412
+ATQ+A + KS AN SH+IR + GI G+ L LET L R
Sbjct: 1269 QATQRARAATQAKSEFLANMSHEIRTPMNGILGMTSLL---------LETELTGEQRRFA 1319
Query: 413 NVCAND---LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
+ N+ LL ++N ILD SK+EAGK++L DF + +LLE + A +KG+E++
Sbjct: 1320 EIVRNNGDALLEIINDILDFSKIEAGKLELEMVDFSLNKLLEGLAGALSVQAHKKGIELI 1379
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
D G+ S V+GD +L+QIL+NL+ NA+KFT +G + V+ +K A+ +++
Sbjct: 1380 YDIEPGTP---SHVRGDPGRLRQILANLMGNAIKFTEKGEVFVQ--IKTGEAVAADTVAE 1434
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
+ G + K+ AV+ + D A+ F V DTG GI EK +T+FE+
Sbjct: 1435 TEAG---------APDVKSTEPEVAVSVSDNDAPAVTLLFSVKDTGIGISPEKIETIFES 1485
Query: 590 YVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV-FLAIREA 643
+ Q + GGTGLGL I + L ++GG + + N G+ F F F A EA
Sbjct: 1486 FTQADSSITRNFGGTGLGLTISRKLAGMLGGKLWVT--SNPGAGSTFAFTARFEAPEEA 1542
Score = 40.4 bits (93), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD+ R + L GA+V ++ L R ++ P+
Sbjct: 1558 RILVVDDNATNRLILNRTLTGYGASVTEADSAIRGLFEFRRAADEGN--------PFRLA 1609
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+DC MP M+G+ ++ + R I+ LT+ + +K G+ +L KP++
Sbjct: 1610 LIDCRMPGMDGFGLAERMHKAPVRTGT-TEIMMLTSDNRSGDLEKCRNLGISRYLIKPIS 1668
Query: 1120 RDHLMEA 1126
R +++A
Sbjct: 1669 RKDILDA 1675
>gi|162458665|ref|NP_001105857.1| histidine kinase [Zea mays]
gi|89242031|dbj|BAE80686.1| histidine kinase [Zea mays]
Length = 975
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 161/352 (45%), Gaps = 45/352 (12%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
I +G + + + A A + + K E QAE + KS A SH+I
Sbjct: 313 ITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATVSHEI 372
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGLLNSILDTSKVEAGKM 437
R + G+ G++++ G++L + +C L+ L+N +LD +K+EAGK+
Sbjct: 373 RTPMNGVLGMLDMLL-----GTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKL 427
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
+L FD+ L++DV+ LF + K +E+ + D +V K V GD + +QIL+NL
Sbjct: 428 ELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCD-NVPK--DVLGDPWRFRQILTNL 484
Query: 498 LSNAVKFTSEGHISVRACVKKPS-----AIGNPSL----------------------SSS 530
+ NAVKFT GH+ VR C+ S + N ++ ++
Sbjct: 485 VGNAVKFTERGHVFVRVCLADNSNMEAGQVLNGAMNGKDGRVDSTTNGAFNTLSGFEAAD 544
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
R Q L + DLE N+ Q D + + ++DTG GIP + + VF +
Sbjct: 545 RRNSWQYFKMLLSDKESLLDDLEGTNSDQSDSDHVTLAISIEDTGVGIPLQAQDRVFTPF 604
Query: 591 VQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+Q GGTG+GL I + L LMGG I V + G+ F F+ L
Sbjct: 605 MQADSSTSRNYGGTGIGLSISKCLAELMGGQISFVSRPF--VGSTFTFSTTL 654
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 29/152 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + RVA L+ GA V E+G+ A+ L L PH
Sbjct: 827 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISL----------LQPPHC-- 874
Query: 1056 YDYILMDCEMPIMNGYEATRKIRE------EEKRNQV-----------HIPIIALTAHIS 1098
+D MD +MP M+G+EATR+IR+ EE++N++ H+P++A+TA +
Sbjct: 875 FDACFMDVQMPEMDGFEATRQIRQTEMRVNEERKNKLVLIEGSTFVEYHLPVLAMTADVI 934
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+K I++GMD ++ KP + + L +A+ L
Sbjct: 935 QATYEKCIKSGMDGYVSKPFDEEQLYQAVSRL 966
>gi|413923913|gb|AFW63845.1| putative histidine kinase family protein [Zea mays]
Length = 975
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 161/352 (45%), Gaps = 45/352 (12%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
I +G + + + A A + + K E QAE + KS A SH+I
Sbjct: 313 ITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATVSHEI 372
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGLLNSILDTSKVEAGKM 437
R + G+ G++++ G++L + +C L+ L+N +LD +K+EAGK+
Sbjct: 373 RTPMNGVLGMLDMLL-----GTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKL 427
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
+L FD+ L++DV+ LF + K +E+ + D +V K V GD + +QIL+NL
Sbjct: 428 ELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCD-NVPK--DVLGDPWRFRQILTNL 484
Query: 498 LSNAVKFTSEGHISVRACVKKPS-----AIGNPSL----------------------SSS 530
+ NAVKFT GH+ VR C+ S + N ++ ++
Sbjct: 485 VGNAVKFTERGHVFVRVCLADNSNMEAGQVLNGAMNGKDGRVDSTTNGAFNTLSGFEAAD 544
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
R Q L + DLE N+ Q D + + ++DTG GIP + + VF +
Sbjct: 545 RRNSWQYFKMLLSDKESLLDDLEGTNSDQSDSDHVTLAISIEDTGVGIPLQAQDRVFTPF 604
Query: 591 VQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+Q GGTG+GL I + L LMGG I V + G+ F F+ L
Sbjct: 605 MQADSSTSRNYGGTGIGLSISKCLAELMGGQISFVSRPF--VGSTFTFSTTL 654
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 29/152 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + RVA L+ GA V E+G+ A+ L L PH
Sbjct: 827 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISL----------LQPPHC-- 874
Query: 1056 YDYILMDCEMPIMNGYEATRKIRE------EEKRNQV-----------HIPIIALTAHIS 1098
+D MD +MP M+G+EATR+IR+ EE++N++ H+P++A+TA +
Sbjct: 875 FDACFMDVQMPEMDGFEATRQIRQTEMRVNEERKNKLVLIEGSTFVEYHLPVLAMTADVI 934
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+K I++GMD ++ KP + + L +A+ L
Sbjct: 935 QATYEKCIKSGMDGYVSKPFDEEQLYQAVSRL 966
>gi|428311457|ref|YP_007122434.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428253069|gb|AFZ19028.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 716
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 157/312 (50%), Gaps = 28/312 (8%)
Query: 336 VFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELC 395
V ++A A+ E L S EA + AER + KS AN SH++R L I G +L
Sbjct: 163 VERTAALAKTEAELRQSEATMQEAKEAAERANRAKSQFLANMSHELRTPLNAILGFTQLL 222
Query: 396 YVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVD 455
++ E ++ +N LL L+N +L SK+E GK+ L ++ FD+ LL+ +
Sbjct: 223 IRDSSLTIEQRESIEIINRSGEHLLELINDVLQMSKIEVGKVTLDQQSFDLYRLLDSLEA 282
Query: 456 LFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRAC 515
+F A +KG++++ D + G V+ D KL+Q+L NLL NA+KFT+ G +++R
Sbjct: 283 MFQLPAQKKGLQLIFDYAPGLP---QHVQTDENKLRQVLINLLGNALKFTAFGSVTLRVS 339
Query: 516 VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTG 575
+K G+ L + S L +L+ V F V+DTG
Sbjct: 340 -RKLKVEGSHELQVEKFNVESSTPPL---------NLQPVT----------LYFAVEDTG 379
Query: 576 KGIPKEKRKTVFENYVQVKEGEG---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GI E +FE ++Q G GTGLGL I + V+LMGGDI V+ G +GT F
Sbjct: 380 PGIEPEDLDLIFEAFIQTAIGRKSSEGTGLGLPISRKFVQLMGGDI-TVNSTLG-KGTIF 437
Query: 633 RFNVFLAIREAS 644
+F V +++ A+
Sbjct: 438 QFEVQVSLSSAT 449
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 32/150 (21%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD+ R + L LG V+ NG+ AL +Q + PH+ I
Sbjct: 471 RILVVDDAPESRLLLVKLLAALGFEVQEAVNGQEAL--------EQWNRFQPHL-----I 517
Query: 1060 LMDCEMPIMNGYEATRKI--REEEK---------RNQVH-------IPIIALTAHISGEE 1101
MD MPI++GYEAT++I RE+E+ R +H IIALTA EE
Sbjct: 518 WMDMRMPILDGYEATQQIKAREQERGKDGKSTQGREVIHPSAPIGKTVIIALTASAFEEE 577
Query: 1102 ADKTIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
+ G D + KP + + + + +YL
Sbjct: 578 RHLVVSVGCDDFVRKPFREEMIFDKMAQYL 607
>gi|428320626|ref|YP_007118508.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428244306|gb|AFZ10092.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1375
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 158/341 (46%), Gaps = 69/341 (20%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH++R L I G +L E + N+R +N LL L+N ILD
Sbjct: 912 KSTFLANMSHELRTPLNAILGFSQLMQRSTNLTREQQENIRIINRSGEHLLALINQILDL 971
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
+K+E G++ L DF + LL +V ++F A + ++++ D S + ++ V+ D++K
Sbjct: 972 AKIETGRITLNPTDFKLSSLLNEVEEMFQLQAREQQLQLIFDCS-SDIPEY--VQTDQLK 1028
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+Q+L NLLSNA+KFT+EG I+VR + + R G Q + + Y
Sbjct: 1029 LRQVLINLLSNAIKFTNEGGIAVR-------------VRAVREGENQQLPIINY------ 1069
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG---EGGTGLGLGI 606
+ FE++DTG GI ++ +F+ +VQ G + GTGLGL I
Sbjct: 1070 ----------------QLYFEIEDTGAGIAADELDKLFQAFVQTTTGTKSQQGTGLGLAI 1113
Query: 607 VQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDT 666
Q V+LMGG I + + G GT F F++ ++ +A A
Sbjct: 1114 SQQFVKLMGGVITVRSEVGG--GTTFAFDIPVSAVDAPATQ------------------- 1152
Query: 667 QLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVL 707
V+ P + + N PR IL R + +++
Sbjct: 1153 -------PVQPPRRVMGLERNQPRYRILIVDDRSDNRQLLI 1186
>gi|339500954|ref|YP_004698989.1| Hpt sensor hybrid histidine kinase [Spirochaeta caldaria DSM 7334]
gi|338835303|gb|AEJ20481.1| Hpt sensor hybrid histidine kinase [Spirochaeta caldaria DSM 7334]
Length = 837
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 138/285 (48%), Gaps = 54/285 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA + AER KS AN SH+IR + I G+ EL + E RQ+ A
Sbjct: 146 LEAKEIAERAIETKSQFLANMSHEIRTPIQTIIGMSELLQ-DTRLDHEQSEYARQIRFSA 204
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDG 475
+ LL L+N ILD SK+EAGK+ L DF V E++E VD+ A +KG+E+ +D P D
Sbjct: 205 DVLLSLVNDILDYSKIEAGKLALEHIDFSVEEMIEQSVDMISLEAHKKGLEIAIDIPKDA 264
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ +KGD + +QI+ NL+ NAVKFT EG I V
Sbjct: 265 AL----HIKGDPNRFRQIIINLVKNAVKFTHEGSIIV----------------------- 297
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
SC K D EA+ T V DTG GI E R +F + Q
Sbjct: 298 ---SC----RKTKYHDSEAI------------TITVADTGIGIAPELRPKLFTTFFQGDP 338
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL I + LV+ MGG+I +V E G G+ FRF +
Sbjct: 339 STTRRFGGTGLGLAISRHLVQSMGGEISMVPNEGG--GSIFRFII 381
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
P+D I MD +MP MNGYE TRK+R+ RN PIIA+TA +E ++ IEAGM+ L
Sbjct: 614 PFDIIFMDIQMPRMNGYETTRKLRQ---RNFTG-PIIAVTASALADEREQCIEAGMNDVL 669
Query: 1115 GKPLNR 1120
KP R
Sbjct: 670 IKPYKR 675
>gi|167628755|ref|YP_001679254.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
gi|167591495|gb|ABZ83243.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
Length = 940
Score = 137 bits (344), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 147/291 (50%), Gaps = 62/291 (21%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQMNVCAN 417
A ++A+ S KS A SH+IR + G+ G++EL +EA P E + + + C+N
Sbjct: 418 AKEEADLASRAKSDFLATMSHEIRTPMNGMLGMLEL--LEATPLDEEQREYVSVVRDCSN 475
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDG 475
LL L+N +LD S++E G + L E+DF+ + +V L P+A RKG++ V PS
Sbjct: 476 LLLSLINDVLDLSRIEKGAVSLEEKDFETKSMKRYLVSLIEPMAARKGLDFVSEFSPSVP 535
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
VL +GD V+L+Q+L NLL+NAVKFT++G I++RA V GN
Sbjct: 536 PVL-----RGDPVRLRQVLLNLLNNAVKFTAKGCITLRAYVT-----GN----------- 574
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
E TFEV+DTG GI +E R ++F+ + +
Sbjct: 575 ------------------------------EITFEVEDTGPGILEEIRGSIFKPFTRGHS 604
Query: 596 G----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
G GG GLGL I + LV LMGG I + G+ FRF V L I +
Sbjct: 605 GTDSMHGGAGLGLSICRRLVELMGGGISF--ETTAGVGSLFRFTVPLKISD 653
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 13/123 (10%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVADD RRV + L LG E G+ A+++ Q++ Y +L
Sbjct: 681 VLVADDFEFNRRVLTMQLGKLGLEAETAAGGQEAVEMF-----SQKN--------YALVL 727
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MDC MP M+G++A IR E H PIIA+TA + EE ++++ AGMD ++ KP+
Sbjct: 728 MDCRMPGMDGFQAAAAIRRLEAGKNRHTPIIAVTAGAAPEEKERSLAAGMDDYVKKPVLL 787
Query: 1121 DHL 1123
D L
Sbjct: 788 DAL 790
>gi|334119823|ref|ZP_08493907.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457464|gb|EGK86087.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1702
Score = 136 bits (343), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 153/299 (51%), Gaps = 55/299 (18%)
Query: 357 MEATQQAERKSMN----KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL--- 409
E QQA ++ KSL AN SH+IR + G+ G+ +L L+TNL
Sbjct: 1006 FEQAQQAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLL---------LKTNLTPE 1056
Query: 410 -----RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK 464
+ + + +LL ++N ILD SK+EAG+M+L +F++ + +V+DL A K
Sbjct: 1057 QIDFVQTLKLSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEK 1116
Query: 465 GVEVV-LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG 523
G+EVV L +D + ++KGD +L+QIL+NL++NA+KFT G + + +
Sbjct: 1117 GIEVVALIDTDVPL----QIKGDAARLRQILTNLINNAIKFTEAGEVVIEV-----ADAS 1167
Query: 524 NPSL--SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
NP L +S L+ I L +N ++M F+V DTG GI E
Sbjct: 1168 NPGLLAASDNQKILEKIEPLKIENN----------------DSMLLLFKVTDTGIGIATE 1211
Query: 582 KRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+K +F+++ QV GGTGLGL I + LV LMGG I + + +G+ F F V
Sbjct: 1212 DQKKLFQSFTQVDASTTRKYGGTGLGLAISKELVELMGGQIGV--ESTPGQGSTFWFTV 1268
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 21/138 (15%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
+ L KIL+ +D+ + ++V LR LG + NG AL +V +
Sbjct: 1439 RDLASLKILLVEDTPINQKVGLNQLRVLGCAADVANNGAEALSMV-------------AL 1485
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEK--------RNQVHIPIIALTAHISGEEADKT 1105
YD +LMDC+MP+++GYEAT ++R E + +IA+TA+ + +K
Sbjct: 1486 KKYDIVLMDCQMPVLDGYEATLQLRGLEAADLAAGKMESHQKTVVIAMTANALKGDREKC 1545
Query: 1106 IEAGMDVHLGKPLNRDHL 1123
+ AGMD ++ KP++ + L
Sbjct: 1546 LAAGMDDYISKPISIEKL 1563
Score = 41.2 bits (95), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G+K+L+A D +R+V G VE ENG + + L L +P
Sbjct: 1290 LAGRKMLIASDKPTVRKVLVRMAVVWGMEVEEVENGWMTI----ASLYKAVSLNSP---- 1341
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD +L+D ++P M R +R E Q + LT+ EA + +++G +L
Sbjct: 1342 YDIVLVDIQLPEMVAGSLER-LRISEPAMQ-QTKWVVLTSMTQLAEAKRLVDSGFSGYLT 1399
Query: 1116 KPLNRDHLMEAI 1127
KP+ L + +
Sbjct: 1400 KPVKAHRLFDCL 1411
>gi|434406889|ref|YP_007149774.1| signal transduction histidine kinase [Cylindrospermum stagnale PCC
7417]
gi|428261144|gb|AFZ27094.1| signal transduction histidine kinase [Cylindrospermum stagnale PCC
7417]
Length = 1055
Score = 136 bits (342), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 155/314 (49%), Gaps = 45/314 (14%)
Query: 330 ISMLTFVFKSARAARKEMHLCASLIKQME----ATQQAERKSMNKSLAFANASHDIRAAL 385
I ++T + A ++ L A +Q E A + A+ ++ KS AN SH++R L
Sbjct: 530 IQIVTQIGNQLGVAVQQAELFAQTQQQAEDLKLAKEAADAANLAKSEFLANMSHELRTPL 589
Query: 386 AGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFD 445
I G +L + SE + +N LLGL+N +L+ SK+EAG++ L E +FD
Sbjct: 590 NAILGFTQLMQQDQSLTSEHQRYTEIINQSGEHLLGLINDVLEMSKIEAGRITLSEIEFD 649
Query: 446 VGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFT 505
+ +LL + + A+ KG+++ D D +V + +K D KL+Q+L NLL NA+KFT
Sbjct: 650 LHKLLNSLFAMLQLKALSKGLQLSFD-YDATVPQC--IKTDENKLRQVLINLLGNAIKFT 706
Query: 506 SEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAM 565
+G +++R ++ S L S+ H L
Sbjct: 707 QQGSVTLRIRNQESSQFHKRELESTPHTLL------------------------------ 736
Query: 566 EFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG---GTGLGLGIVQSLVRLMGGDIEIVD 622
FEV+DTG GI E+ +F+ + Q + G+ GTGLGL I Q +LMGG+I V
Sbjct: 737 ---FEVEDTGPGIAPEELGNLFQAFQQTRAGQQSKEGTGLGLRISQKFAQLMGGEI-TVS 792
Query: 623 KENGERGTCFRFNV 636
E G +G+CF F +
Sbjct: 793 SEPG-KGSCFAFYI 805
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 24/143 (16%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D R + L LG V+ ENG+ A+ L + PH+ I
Sbjct: 835 RILIVEDHPANRLLLNTILSRLGFEVQEAENGQMAIALWQQW--------RPHL-----I 881
Query: 1060 LMDCEMPIMNGYEATRKIREEEKR---NQVHIP--IIALTAHISGEEADKTIEAGMDVHL 1114
MD MPI++GYEA R+IR E++ Q+ P IIALTA ++ ++++AG D +
Sbjct: 882 FMDMYMPIIDGYEAARQIRNWEQKLADEQIFTPTKIIALTASAFADQRQESLDAGCDDFV 941
Query: 1115 GKPLNRDHLMEA------IKYLH 1131
KP + ++E ++YL+
Sbjct: 942 SKPFRWEEILETLALHLGVQYLY 964
>gi|422341206|ref|ZP_16422147.1| sensor protein [Treponema denticola F0402]
gi|325474777|gb|EGC77963.1| sensor protein [Treponema denticola F0402]
Length = 676
Score = 136 bits (342), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 173/361 (47%), Gaps = 54/361 (14%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q AE+ + +SL AN SH+IR + I G++EL E E RQ+N A
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELIN-ETNLDEEQSEYTRQVNFSAEV 191
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +LD SK+E+G M + F++ + +E VDL A +KG+E+V+D SD +
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISD-KIP 250
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
F + GD +L+Q+L N + NAVKFT G++SV + + +P +++H F+
Sbjct: 251 DF--IYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDP--YAAKHFFI--- 303
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
FEV DTG G+ E++ +F ++ Q +
Sbjct: 304 -----------------------------LFEVADTGIGVNNEQKSKIFNSFYQGNAAIN 334
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL------AIREASANDN 648
GGTGLGL I ++++ +M G I I K+N RG+ F F + L A E+ D
Sbjct: 335 RKYGGTGLGLAISKNIITMMKGQIGI--KDNISRGSVFWFKIPLVPSKKKAPHESILLDK 392
Query: 649 NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLL 708
NT + L D+ T L+ M L +L + + + ++ + H+ V+
Sbjct: 393 NT---RFLIVDDNMQTRTILKRMLLKFGFEDIAL-VSSGEQAIGVMKTAAEHKNPFNVVF 448
Query: 709 I 709
I
Sbjct: 449 I 449
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G K+LV DD + +++ +I L V +GE A+ S H +D
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAIDTASS----------EH---FD 604
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
I MD +MP +NGYEAT+ +R + PIIA TA E + G++ + KP
Sbjct: 605 IIFMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKP 660
Query: 1118 LNRDHLMEAIK 1128
N+ L E +K
Sbjct: 661 FNKKQLFEMVK 671
>gi|449108510|ref|ZP_21745152.1| hypothetical protein HMPREF9722_00848 [Treponema denticola ATCC
33520]
gi|448961311|gb|EMB42016.1| hypothetical protein HMPREF9722_00848 [Treponema denticola ATCC
33520]
Length = 676
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 173/361 (47%), Gaps = 54/361 (14%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q AE+ + +SL AN SH+IR + I G++EL E E RQ+N A
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELIN-ETNLDEEQSEYTRQVNFSAEV 191
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +LD SK+E+G M + F++ + +E VDL A +KG+E+V+D SD +
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISD-KIP 250
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
F + GD +L+Q+L N + NAVKFT G++SV + + +P +++H F+
Sbjct: 251 DF--IYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDP--YAAKHFFI--- 303
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
FEV DTG G+ E++ +F ++ Q +
Sbjct: 304 -----------------------------LFEVADTGIGVNNEQKSKIFNSFYQGNAAIN 334
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL------AIREASANDN 648
GGTGLGL I ++++ +M G I I K+N RG+ F F + L A E+ D
Sbjct: 335 RKYGGTGLGLAISKNIITMMKGQIGI--KDNIPRGSVFWFKIPLVPSKKKAPHESILLDK 392
Query: 649 NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLL 708
NT + L D+ T L+ M L +L + + + ++ + H+ V+
Sbjct: 393 NT---RFLIVDDNMQTRTILKRMLLKFGFEDIAL-VSSGEQAIGVMKTAAEHKNPFNVVF 448
Query: 709 I 709
I
Sbjct: 449 I 449
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G KILV DD + +++ +I L V +GE A+ S H +D
Sbjct: 558 GCKILVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAIDTASS----------EH---FD 604
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
I MD +MP +NGYEAT+ +R + PIIA TA E + G++ + KP
Sbjct: 605 IIFMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKP 660
Query: 1118 LNRDHLMEAIK 1128
N+ L E +K
Sbjct: 661 FNKKQLFEMVK 671
>gi|428316987|ref|YP_007114869.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428240667|gb|AFZ06453.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1561
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 143/291 (49%), Gaps = 49/291 (16%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + AE + KS+ N SH++R L I G +L E+ L+ NL+ +N
Sbjct: 1089 QAKEAAEAANQAKSVFLTNMSHELRTPLNSILGFTQLMSYESNLTPSLQENLQIVNRSGR 1148
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N ILD SK+E+G+M L DF + LL + ++ K ++++ + D +
Sbjct: 1149 HLLDLINDILDLSKIESGRMTLNPSDFALTSLLTSIEEMLQIKVQSKELQLIFE-LDPDI 1207
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+F V D KL Q+L NLL NA+KFT++G I++R
Sbjct: 1208 PQF--VHSDEKKLYQVLVNLLGNAIKFTNQGRITLR------------------------ 1241
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
V AAQRD+ + FEV+DTG GI + ++F+ +VQ + G
Sbjct: 1242 -----------------VRAAQRDKTSCYLCFEVEDTGVGIAPTEIDSLFKVFVQAQAGN 1284
Query: 598 G---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
GTGLGL I Q +V+LMGG I + K RG+ F F + + + +A +
Sbjct: 1285 NLSQGTGLGLAISQKIVQLMGGKIRV--KSTLNRGSTFSFELRVQLPQAES 1333
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D RR+ L +G V G A+ L S L PH+ I
Sbjct: 1354 RILVVEDLEENRRLLVEILTSIGFEVREATQGVEAISLWESWL--------PHL-----I 1400
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MPIM+GY AT+ I+ E +NQ I IIALTA + +E K + AG + + KP
Sbjct: 1401 FMDLRMPIMDGYTATKYIK-EHPQNQETI-IIALTASVFEQERQKVLRAGFNDFISKPFQ 1458
Query: 1120 RDHLMEAI-KYL 1130
+ + + I KYL
Sbjct: 1459 QREIFDKIAKYL 1470
>gi|334116803|ref|ZP_08490895.1| PAS sensor protein [Microcoleus vaginatus FGP-2]
gi|333461623|gb|EGK90228.1| PAS sensor protein [Microcoleus vaginatus FGP-2]
Length = 2286
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 151/315 (47%), Gaps = 48/315 (15%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A + A ++ KS AN SH++R L I G +L + +E + NL +
Sbjct: 1787 AKEAAVAANLAKSTFLANMSHELRTPLNAILGFSQLMNQDTNLLTEQKENLNIIQRSGEH 1846
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +LD SKVEAG M L E + ++ L ++ D+F A + + + + + V
Sbjct: 1847 LLSLINQVLDLSKVEAGGMTLSENNLNLHHFLAEIEDIFALKANDQSLHLRFECA-ADVP 1905
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
K+ + D VKL+Q+L N +SNAVKFTS G +S+
Sbjct: 1906 KY--ICADEVKLRQVLINFISNAVKFTSSGSVSLEV------------------------ 1939
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG 598
KNK+ + EA + + TFEV DTG GI E+ + +F+ +VQ G+
Sbjct: 1940 -----KNKQVKAQSEAGTKTTNNPQSTTITFEVKDTGVGIAAEELENLFKPFVQTASGQK 1994
Query: 599 ---GTGLGLGIVQSLVRLMGGDIEIVD-----------KENGE--RGTCFRFNVFLAIRE 642
GTGLGL I + VRLMGG+I ++ KE E GT F+F++ + I +
Sbjct: 1995 VQQGTGLGLTISRQFVRLMGGEITVISHGKAFTPGMPLKEFLEDTTGTTFKFDIPVGIAD 2054
Query: 643 ASANDNNTQGEKELA 657
ASA N + +A
Sbjct: 2055 ASAIQNQPHSRRVVA 2069
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD R++ L+ +G VE NG AL++ D +PH+ I
Sbjct: 2078 RILVVDDRDYNRQLLVKLLKPVGFEVEEASNGIEALEI--------WDSYSPHL-----I 2124
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+M+GYEAT++I+ K +IA+TA + EE + AG D + KP +
Sbjct: 2125 WMDMRMPVMDGYEATKRIKGTLKGQAT--AVIAITASVWEEEKAVILSAGCDDFVRKPFH 2182
Query: 1120 RDHLMEAI 1127
+ + + +
Sbjct: 2183 TEAIFDIM 2190
>gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1112
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 152/292 (52%), Gaps = 53/292 (18%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I+ +A +QAE+ SM KS AN SH+IR ++GI G +++ E+ S +L M
Sbjct: 566 IELYQAKEQAEKASMAKSEFLANMSHEIRTPISGIIGALDMLASESADQSR--KDLVDMT 623
Query: 414 V-CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
+ A L ++N ILD SKVEAGK+ L+ EDF + L+ V+ L+ A +G+ + +D
Sbjct: 624 LESARSLEQIINDILDLSKVEAGKLDLVHEDFSLRSLVRRVLGLYSIQARNQGIALKVD- 682
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+D + ++ V+GD +L+Q+L NL+SNAVKFT GH+ +R
Sbjct: 683 ADSRLPEY--VRGDAHRLEQVLRNLVSNAVKFTQAGHVLIR------------------- 721
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
V A DE+ F+V+D+G+GI + ++F+++ Q
Sbjct: 722 ----------------------VKAMDIDEHKATVEFQVEDSGEGISGDFLPSLFDSFTQ 759
Query: 593 VKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
G G+GLGL I Q LV++MGG+I++ + RG+ F F + L I
Sbjct: 760 ADITYGKKHQGSGLGLAISQRLVQMMGGEIQV--QSTPGRGSVFSFALTLGI 809
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 34/148 (22%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILV +D + R L G V+ NGE A+ G +D IL
Sbjct: 835 ILVVEDVELNREYMGYLLESRGHRVQFASNGEEAVSAFEPG-------------RFDLIL 881
Query: 1061 MDCEMPIMNGYEATRKIREEE---------------------KRNQVHIPIIALTAHISG 1099
MD +MP ++G EATR+IR E R+ +PIIALTA+
Sbjct: 882 MDIQMPGIDGLEATRRIRSMEGERLGERGMEHGARGGTPDVGSRDSARVPIIALTAYAMP 941
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ +K +E GMD ++ KP++ L++ I
Sbjct: 942 GDREKFLEEGMDGYVSKPVDPSKLLQEI 969
>gi|449105633|ref|ZP_21742335.1| hypothetical protein HMPREF9729_00600 [Treponema denticola ASLM]
gi|451969936|ref|ZP_21923165.1| hypothetical protein HMPREF9728_02372 [Treponema denticola US-Trep]
gi|448967016|gb|EMB47660.1| hypothetical protein HMPREF9729_00600 [Treponema denticola ASLM]
gi|451701391|gb|EMD55863.1| hypothetical protein HMPREF9728_02372 [Treponema denticola US-Trep]
Length = 676
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 173/361 (47%), Gaps = 54/361 (14%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q AE+ + +SL AN SH+IR + I G++EL E E RQ+N A
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELIN-ETNLDEEQSEYTRQVNFSAEV 191
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +LD SK+E+G M + F++ + +E VDL A +KG+E+V+D SD +
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISD-KIP 250
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
F + GD +L+Q+L N + NAVKFT G++SV + + +P +++H F+
Sbjct: 251 DF--IYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDP--YAAKHFFI--- 303
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
FEV DTG G+ E++ +F ++ Q +
Sbjct: 304 -----------------------------LFEVADTGIGVNNEQKSKIFNSFYQGNAAIN 334
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL------AIREASANDN 648
GGTGLGL I ++++ +M G I I K+N RG+ F F + L A E+ D
Sbjct: 335 RKYGGTGLGLAISKNIITMMKGQIGI--KDNIPRGSVFWFKIPLVPSKKKAPHESILLDK 392
Query: 649 NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLL 708
NT + L D+ T L+ M L +L + + + ++ + H+ V+
Sbjct: 393 NT---RFLIVDDNMQTRTILKRMLLKFGFEDIAL-VSSGEQAIGVMKTAAEHKNPFNVVF 448
Query: 709 I 709
I
Sbjct: 449 I 449
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G K+LV DD + +++ +I L V +GE A+ S H +D
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAIDTASS----------EH---FD 604
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
I MD +MP +NGYEAT+ +R + PIIA TA E + G++ + KP
Sbjct: 605 IIFMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKP 660
Query: 1118 LNRDHLMEAIK 1128
N+ L E +K
Sbjct: 661 FNKKQLFEMVK 671
>gi|406660793|ref|ZP_11068921.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Cecembia lonarensis
LW9]
gi|405555346|gb|EKB50380.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Cecembia lonarensis
LW9]
Length = 1441
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 152/302 (50%), Gaps = 64/302 (21%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
+ A+KE++L A ++AE+ S KS + SH+IR + + G+ L +E
Sbjct: 1050 KEAQKELYL---------AKEKAEQASKVKSQFLSIMSHEIRTPMNAVIGMAHLL-IEDN 1099
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
P + NL+ + A +LLGL+N ILD +K+++GK++L DF++ ++ ++ +
Sbjct: 1100 PRPDQLENLKTLQFSAENLLGLINDILDFTKIDSGKVELEHVDFELKNVINRIIHSYTYQ 1159
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
A K ++++ + + SK+ GD V+L QI++NL+SNAVKFT +G I +
Sbjct: 1160 AREKALDILFEYDEEIP---SKLLGDPVRLGQIVNNLVSNAVKFTPQGFIRIALT----- 1211
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT--FEVDDTGKGI 578
+ DEN+ E F+ +DTG GI
Sbjct: 1212 --------------------------------------RIDENSEEIAIKFDFEDTGIGI 1233
Query: 579 PKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
P+EK +VFE + Q GGTGLGL IV+ LV L GGDI+++ +E G GT F F
Sbjct: 1234 PEEKLDSVFEAFTQASAETTRKFGGTGLGLAIVKKLVALFGGDIQVIPREGG--GTLFTF 1291
Query: 635 NV 636
V
Sbjct: 1292 VV 1293
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGA 1050
+K L KILVA+D+++ + + L G V ENG+ A++ + D
Sbjct: 1312 TEKDLHQAKILVAEDNLVNQVMINKFLMKWGVNEVVIAENGKEAIK--------EFDDSD 1363
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGM 1110
H+ +L+D +MP M+G+E IR ++ PIIALTA + + E GM
Sbjct: 1364 FHL-----VLLDLQMPEMDGFEVASYIRAHLDPHKKKTPIIALTASSLIDVKQQLDEVGM 1418
Query: 1111 DVHLGKPLNRDHLM-EAIKYLH 1131
D + KP N D+L + IKYL+
Sbjct: 1419 DDFIPKPFNPDNLYAKIIKYLN 1440
>gi|449116753|ref|ZP_21753199.1| hypothetical protein HMPREF9726_01184 [Treponema denticola H-22]
gi|448953008|gb|EMB33804.1| hypothetical protein HMPREF9726_01184 [Treponema denticola H-22]
Length = 676
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 173/361 (47%), Gaps = 54/361 (14%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q AE+ + +SL AN SH+IR + I G++EL E E RQ+N A
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELIN-ETNLDEEQSEYTRQVNFSAEV 191
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +LD SK+E+G M + F++ + +E VDL A +KG+E+V+D SD +
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISD-KIP 250
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
F + GD +L+Q+L N + NAVKFT G++SV + + +P +++H F+
Sbjct: 251 DF--IYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDP--YAAKHFFI--- 303
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
FEV DTG G+ E++ +F ++ Q +
Sbjct: 304 -----------------------------LFEVADTGIGVNNEQKSKIFNSFYQGNAAIN 334
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL------AIREASANDN 648
GGTGLGL I ++++ +M G I I K+N RG+ F F + L A E+ D
Sbjct: 335 RKYGGTGLGLAISKNIITMMKGQIGI--KDNIPRGSVFWFKIPLVPSKKKAPHESILLDK 392
Query: 649 NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLL 708
NT + L D+ T L+ M L +L + + + ++ + H+ V+
Sbjct: 393 NT---RFLIVDDNMQTRTILKRMLLKFGFEDIAL-VSSGEQAIGVMKTAAEHKNPFNVVF 448
Query: 709 I 709
I
Sbjct: 449 I 449
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G K+LV DD + +++ +I L V +GE A+ S H +D
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAIDTASS----------EH---FD 604
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
I MD +MP +NGYEAT+ +R + PIIA TA E + G++ + K
Sbjct: 605 IIFMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKS 660
Query: 1118 LNRDHLMEAIK 1128
N+ L E +K
Sbjct: 661 FNKKQLFEMVK 671
>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1175
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 152/292 (52%), Gaps = 28/292 (9%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE + KS AN SH+IR + G+ G+ L ++ SE + R + A
Sbjct: 388 IQAKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGL-LLDTDLDSEQQHYARTVRSSA 446
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSD 474
LL ++N ILD SK+EAG++ + DFD+ +L D + A KG+E++ +DP+
Sbjct: 447 ESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMDPNV 506
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
S+ V+GD +L+QIL NL+ NAVKFT G + +R V K + S S +
Sbjct: 507 PSM-----VRGDSGRLRQILMNLVGNAVKFTEHGEVEIR--VSKSEVVDQRSEVSDQPAN 559
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
S K++ D +E F++ DTG GIP++K+ ++FE++ QV
Sbjct: 560 RLSHEQTGIKDQYG------------DSRIVELCFQIRDTGIGIPQDKQDSLFESFSQVD 607
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GGTGLGL I + L +MGG + E+ +G+ F F V L +++
Sbjct: 608 ASTTRKFGGTGLGLAISRQLAEMMGGTAGLESVED--QGSTFWFTVRLGVQD 657
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 13/82 (15%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILVA+D+M+ ++VA L+ +G +A NG+ AL + + +PYD +
Sbjct: 826 RILVAEDNMVNQQVALGILKKMGLRADAVANGQEALHALEN-------------IPYDLV 872
Query: 1060 LMDCEMPIMNGYEATRKIREEE 1081
LMD +MP M G EATR+IR E
Sbjct: 873 LMDVQMPEMGGLEATRRIRSME 894
Score = 43.1 bits (100), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILV DD+ +R + + L V A NG AL + A +P D IL
Sbjct: 9 ILVVDDTQTIRHITKKTLEADNYVVLAASNGPEALSI------------AADKIP-DLIL 55
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
+D MP M+G+E +++ + IP++ +TA + E K ++ G + + KP +
Sbjct: 56 LDVMMPDMDGFEVCSRLKADICTRD--IPVVFITASGNKEHEVKGLDLGAEDFVHKPFHE 113
Query: 1121 DHLM 1124
L+
Sbjct: 114 GVLL 117
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1085 QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
+ IPIIA+TA E+ ++ IEAGMD + KP+N D L + K+L
Sbjct: 964 EFRIPIIAMTAGAMQEDRERCIEAGMDDYTAKPVNPDELARVLEKWL 1010
>gi|449124538|ref|ZP_21760857.1| hypothetical protein HMPREF9723_00901 [Treponema denticola OTK]
gi|449129541|ref|ZP_21765771.1| hypothetical protein HMPREF9724_00436 [Treponema denticola SP37]
gi|448942869|gb|EMB23763.1| hypothetical protein HMPREF9723_00901 [Treponema denticola OTK]
gi|448945589|gb|EMB26459.1| hypothetical protein HMPREF9724_00436 [Treponema denticola SP37]
Length = 676
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 173/361 (47%), Gaps = 54/361 (14%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q AE+ + +SL AN SH+IR + I G++EL E E RQ+N A
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELIN-ETNLDEEQSEYTRQVNFSAEV 191
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +LD SK+E+G M + F++ + +E VDL A +KG+E+V+D SD +
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISD-KIP 250
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
F + GD +L+Q+L N + NAVKFT G++SV + + +P +++H F+
Sbjct: 251 DF--IYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDP--YAAKHFFI--- 303
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
FEV DTG G+ E++ +F ++ Q +
Sbjct: 304 -----------------------------LFEVADTGIGVNNEQKSKIFNSFYQGNAAIN 334
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL------AIREASANDN 648
GGTGLGL I ++++ +M G I I K+N RG+ F F + L A E+ D
Sbjct: 335 RKYGGTGLGLAISKNIITMMKGQIGI--KDNIPRGSIFWFKIPLVPSKKKAPHESILLDK 392
Query: 649 NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLL 708
NT + L D+ T L+ M L +L + + + ++ + H+ V+
Sbjct: 393 NT---RFLIVDDNMQTRTILKRMLLKFGFEDIAL-VSSGEQAIGVMKTAAEHKNPFNVVF 448
Query: 709 I 709
I
Sbjct: 449 I 449
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G K+LV DD + +++ +I L V +GE A+ S H +D
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAIDTASS----------EH---FD 604
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
I MD +MP +NGYEAT+ +R + PIIA TA E + G++ + KP
Sbjct: 605 IIFMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKP 660
Query: 1118 LNRDHLMEAIK 1128
N+ L E +K
Sbjct: 661 FNKKQLFEMVK 671
>gi|381197114|ref|ZP_09904455.1| GacS-like sensor kinase protein [Acinetobacter lwoffii WJ10621]
Length = 937
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 142/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA S +KS+ AN SH++R L I G I L + ++ L+ +
Sbjct: 273 ITYRQARDQAISASQSKSVFLANISHELRTPLNSIDGFIHLLLRQDNLNNDQNLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K +++ +
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELDTATFDLEEAIFDVMDMLSPLAAQKHIDMAFYYA 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D V GD ++ KQIL+NL+SNA+KFT +G I VRA +++ IG
Sbjct: 393 DNVP---KHVVGDALRFKQILTNLISNAIKFTPDGEIIVRARMEQDD-IG---------- 438
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 439 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + E
Sbjct: 469 DASVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFMVNE 524
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 13/141 (9%)
Query: 979 QTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV 1038
Q EE++ E Q G IL DD + V E L L +G+ AL+++
Sbjct: 649 QPLFEEDEMESFNGQ----GLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQQALEIL 704
Query: 1039 RSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR--EEEKRNQVHIPIIALTAH 1096
+ + D A +D + MD +MP+M+G + TR IR E N +PIIALTAH
Sbjct: 705 QE--RAEHDSKA-----FDLVFMDIQMPVMSGVDTTRAIRALESTIENHKRLPIIALTAH 757
Query: 1097 ISGEEADKTIEAGMDVHLGKP 1117
+E K ++ GMD ++ KP
Sbjct: 758 ALADEKQKLLQVGMDDYVTKP 778
>gi|119487282|ref|ZP_01621033.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
gi|119455837|gb|EAW36972.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
Length = 1259
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 141/272 (51%), Gaps = 49/272 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE + KS+ AN SH++R+ L I G ++ + ++ + NL +
Sbjct: 769 VKAKEAAEVANQAKSIFLANMSHELRSPLNAILGFTQVINGSSNLTTQQQNNLNIIQRSG 828
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE--VVLDPSD 474
LLGL+N ILD SK+EAGK+ LI+E FD+ +L+E++ DLF A +K ++ V+++P+
Sbjct: 829 EHLLGLINEILDLSKIEAGKIILIQEPFDLWKLIEELQDLFRIKASQKNLKLTVIINPNL 888
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA---IGNPSLSSSR 531
++ DRVKL+QIL NLLSNA+KFT +G + + A + + S IG +L
Sbjct: 889 PRY-----IQTDRVKLRQILINLLSNAIKFTQKGTVCLEADLSETSPVCLIGTETLPVQL 943
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
H F V DTG GI ++ +F +V
Sbjct: 944 H------------------------------------FRVSDTGVGIEPDEIDNLFSPFV 967
Query: 592 QVKEG---EGGTGLGLGIVQSLVRLMGGDIEI 620
Q + G + GTGLGL I + ++L GG IE+
Sbjct: 968 QTQSGIQSQQGTGLGLAICKGYIKLFGGKIEV 999
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 991 QAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGA 1050
Q +PL +IL+ DD R++ E L +G ++ NG A+ DQ
Sbjct: 1037 QPNQPLY--RILIVDDEPYNRQLLEQILTPVGFELQTANNGLEAI--------DQWQNFQ 1086
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV----HIPIIALTAHISGEEADKTI 1106
P D I MD +MP+++GYEA R+IR+ E++NQ IIALTA + + +
Sbjct: 1087 P-----DLIWMDLKMPVLDGYEAIRQIRQLEQQNQASASPRTVIIALTASAYNYQKEAAL 1141
Query: 1107 EAGMDVHLGKPL 1118
+AG D + KPL
Sbjct: 1142 QAGCDDFVYKPL 1153
>gi|168018625|ref|XP_001761846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686901|gb|EDQ73287.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 308
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 149/266 (56%), Gaps = 30/266 (11%)
Query: 379 HDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQ 438
H++R +A I GL+++ E ++ ++RQ++ CA L+ +LNS LD +KVE+GK+
Sbjct: 1 HELRTPMACIIGLLDMLLSEKLL-DDIANSVRQIHRCATSLVAILNSALDIAKVESGKLV 59
Query: 439 LIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLL 498
L +FD+ L ++D+F KG+ + L +D V K V GD ++ Q+ +NL+
Sbjct: 60 LEMAEFDLEAELTALIDVFSVQCDNKGLFICLQLAD-DVPK--NVVGDSARVMQVFTNLI 116
Query: 499 SNAVKFTSEGHISVRACVKKPSAIGNPSLSS-SRHGFLQSISCLFYKNKKARGDLEAVNA 557
N++KFTS G ISVRA + P NP+ S R GF + LE +
Sbjct: 117 GNSIKFTSCGRISVRARLATPEDGVNPTSSRLQRRGF-------------SSFSLETMFT 163
Query: 558 AQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGT-------GLGLGIVQSL 610
R + + FEVDDTG GI R+ VFEN+VQ G T GLGLGIV+SL
Sbjct: 164 DLRTSDEVIILFEVDDTGPGIEPTLRERVFENFVQ---GAASTTRTHGGTGLGLGIVKSL 220
Query: 611 VRLMGGDIEIVDKENGERGTCFRFNV 636
V++MGGDI IV+KE +G+ F+F +
Sbjct: 221 VQIMGGDIRIVEKEG--QGSVFQFTI 244
>gi|449104263|ref|ZP_21741003.1| hypothetical protein HMPREF9730_01900 [Treponema denticola AL-2]
gi|448963282|gb|EMB43960.1| hypothetical protein HMPREF9730_01900 [Treponema denticola AL-2]
Length = 676
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 173/361 (47%), Gaps = 54/361 (14%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q AE+ + +SL AN SH+IR + I G++EL E E RQ+N A
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELIN-ETNLDEEQSEYTRQVNFSAEV 191
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +LD SK+E+G M + F++ + +E VDL A +KG+E+V+D SD +
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISD-KIP 250
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
F + GD +L+Q+L N + NAVKFT G++SV + + +P +++H F+
Sbjct: 251 DF--IYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDP--YAAKHFFI--- 303
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
FEV DTG G+ E++ +F ++ Q +
Sbjct: 304 -----------------------------LFEVADTGIGVNNEQKSKIFNSFYQGNAAIN 334
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL------AIREASANDN 648
GGTGLGL I ++++ +M G I I K+N RG+ F F + L A E+ D
Sbjct: 335 RKYGGTGLGLAISKNIITMMKGQIGI--KDNIPRGSVFWFKIPLVPSKKKAPHESILLDK 392
Query: 649 NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLL 708
NT + L D+ T L+ M L +L + + + ++ + H+ V+
Sbjct: 393 NT---RFLIVDDNMQTRTILKRMLLKFGFEDIAL-VSSGEQAIGVMKTAAEHKNPFNVVF 448
Query: 709 I 709
I
Sbjct: 449 I 449
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G K+LV DD + +++ +I L V +GE A+ S H +D
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAIDTASS----------EH---FD 604
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
I MD +MP +NGYEAT+ +R + PIIA TA E + G++ + KP
Sbjct: 605 IIFMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKP 660
Query: 1118 LNRDHLMEAIK 1128
N+ L E +K
Sbjct: 661 FNKKQLFEMVK 671
>gi|392542571|ref|ZP_10289708.1| sensor protein [Pseudoalteromonas piscicida JCM 20779]
Length = 1103
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 171/371 (46%), Gaps = 84/371 (22%)
Query: 339 SARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVE 398
+A A+KE+ +A Q AE+ + KS A+ SH+IR + G+ G++ L E
Sbjct: 541 AAVEAKKELE---------QAKQAAEQGAQAKSEFLASMSHEIRTPMNGVIGMLSLLEDE 591
Query: 399 AGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFH 458
++L M A LL L+N ILD SK+EAGK++L DFDV LL ++V+
Sbjct: 592 HLTQTQLHKVSLAMG-SAKSLLNLINDILDFSKIEAGKLELESLDFDVRALLGELVESVA 650
Query: 459 PVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK 518
A +KG+E++LD + L+ V+GD +++QI++NL+SNA+KFT +G I +RA +
Sbjct: 651 LQAQKKGLELILDVTQ---LEKPLVQGDPSRIRQIITNLISNAIKFTEQGEIIIRAWFSE 707
Query: 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
+N + F V+DTG GI
Sbjct: 708 V------------------------------------------DNKLRFHCSVEDTGIGI 725
Query: 579 PKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
P++K +F + QV GGTGLGL IV+ L LM GDI + + G+ F F
Sbjct: 726 PEDKADRLFAKFSQVDASTTRKYGGTGLGLAIVRQLCELMDGDITVSSRFG--HGSQFEF 783
Query: 635 NVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNIL 694
V L + NNTQ E A LQ + + L + N L L
Sbjct: 784 FVTL------IHGNNTQFE---------AAKIDLQGIKI--------LLVDDNLSALTSL 820
Query: 695 SPGSRHEGSHV 705
RH G++V
Sbjct: 821 ESQLRHWGANV 831
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 14/138 (10%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPH 1052
KP R IL+ +D+ + + VA L+ LG T +E ENG A++L++S ++ +
Sbjct: 961 KPCR---ILLVEDNKVNQVVALSMLKKLGITHIEVAENGLLAIELLKSHQDECQ------ 1011
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMD 1111
++ ILMDC+MP M+GY T IR+ + I+A+TA+ + +K + AGM+
Sbjct: 1012 ---FELILMDCQMPEMDGYRTTELIRDGAAGESYQGVKILAMTANAMSGDREKCLNAGMN 1068
Query: 1112 VHLGKPLNRDHLMEAIKY 1129
+L KP++ + L E ++Y
Sbjct: 1069 DYLTKPISEEPLSEKLQY 1086
Score = 41.2 bits (95), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 10/161 (6%)
Query: 971 GEGSS-RYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACE 1029
G GS + T I + + A+ L+G KIL+ DD++ E LRH GA V
Sbjct: 776 GHGSQFEFFVTLIHGNNTQFEAAKIDLQGIKILLVDDNLSALTSLESQLRHWGANVYKAS 835
Query: 1030 NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP 1089
+G AL L + QRD +D L+D + M+G + ++ +++ I
Sbjct: 836 SGIQALSLCEAEY--QRDKNV-----FDIALLDMTLRGMSGEQLGAALKNDKRFKA--IK 886
Query: 1090 IIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+I +T + + E G + KP+ L +A+ L
Sbjct: 887 LIMMTQMGTKGDGQFYAERGYSGYFPKPVTTKDLFDALTIL 927
>gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 1095
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 151/294 (51%), Gaps = 55/294 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AER + KS AN SH+IR L GI G+ +L E P +E ++ +N+ +
Sbjct: 390 IKAKENAERANQAKSTFLANMSHEIRTPLNGIIGIAQLLKNENLPKHVVEY-VKHLNMAS 448
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE--VVLDPSD 474
+ LL L+N I D S++E+G+M++I + F + + + +VV + + A K +E V +DP
Sbjct: 449 HHLLDLINDIFDFSRIESGEMKIINDIFSLKDTINEVVKVLYYRAKEKNIELTVFVDP-- 506
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
L SK+ GD +++KQIL+NLL NA+KFT G++S+ +K +
Sbjct: 507 ---LIPSKIIGDSLRVKQILTNLLGNAIKFTEVGYVSLDVFIKNST-------------- 549
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ-- 592
E +++ F + DTG GI +K++ +F + Q
Sbjct: 550 ---------------------------EKSVDILFVIKDTGIGISGDKKQKLFTPFFQGD 582
Query: 593 --VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
V + GGTGLGL IV+ L+ M GDI + E G +GT F + I E+S
Sbjct: 583 QSVTKKYGGTGLGLTIVKRLIDAMNGDINFI-SEPG-KGTTFYVTLKFGIYESS 634
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 15/126 (11%)
Query: 1002 LVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILM 1061
L+ +D+ + + V + L+ + + +G A+ L + YD + M
Sbjct: 776 LIVEDNAINQIVLQNMLKQFNISSDFANDGLEAVNLAKKK-------------KYDIVFM 822
Query: 1062 DCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRD 1121
D +MP M+GYEATR++R+ + V PIIA++AH +ADK++EAGM+ HL KP++ +
Sbjct: 823 DIQMPNMDGYEATRQLRKIPEYTDV--PIIAVSAHAFKTDADKSLEAGMNDHLTKPVSIN 880
Query: 1122 HLMEAI 1127
L +A+
Sbjct: 881 DLFKAL 886
>gi|428310547|ref|YP_007121524.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252159|gb|AFZ18118.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1113
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 159/304 (52%), Gaps = 43/304 (14%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A + AE + KSL A+ SH++R L + G ++ ++ SE +L+ +N +
Sbjct: 625 AKEAAEVANRAKSLFLASMSHELRTPLNIMLGFTQVMNRDSSLTSEQRESLQIINRSGHH 684
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +LD SK+EAG++ L E FD+ LL + ++F+ A KG+++ L+ + V
Sbjct: 685 LLALINDVLDLSKIEAGRLTLDESSFDLISLLRSLREMFNQKAESKGLQLHLEIA-SDVP 743
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
++ V D KL+Q+L NLL NA+KFT +G +S++ K P + L +
Sbjct: 744 QY--VSADPNKLRQVLINLLGNAIKFTQKGSVSLKVKTKNEKEKTEPRKN------LDKL 795
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
+CL TFEV DTG GI + ++F+ +VQ + G+
Sbjct: 796 ACL--------------------------TFEVSDTGVGIDPNEINSIFDAFVQTQSGKV 829
Query: 598 --GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND-NNTQGEK 654
GTGLGL I + VRLMGGDI V GE G+ FRF + +R A A+D TQ ++
Sbjct: 830 APEGTGLGLAISRKFVRLMGGDI-TVRSTLGE-GSRFRFEI--PVRLALASDVTPTQHQR 885
Query: 655 ELAG 658
++ G
Sbjct: 886 QVIG 889
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 66/132 (50%), Gaps = 18/132 (13%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q P R ILVADD R++ L LG V+ +NGE A+ L + PH
Sbjct: 894 QPPYR---ILVADDQAENRQLLVRLLTPLGLEVQEAKNGEEAVILWQQW--------QPH 942
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
+ I MD MP M+GYEAT++IR + Q I IIALTAH+S + + AG +
Sbjct: 943 L-----IWMDIRMPQMDGYEATQRIRSSVE-GQATI-IIALTAHVSSRDRTLALSAGCND 995
Query: 1113 HLGKPLNRDHLM 1124
+ KP + L
Sbjct: 996 FISKPFQEETLF 1007
>gi|383777032|ref|YP_005461598.1| putative multi-sensor signal transduction histidine kinase
[Actinoplanes missouriensis 431]
gi|381370264|dbj|BAL87082.1| putative multi-sensor signal transduction histidine kinase
[Actinoplanes missouriensis 431]
Length = 1072
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 140/291 (48%), Gaps = 60/291 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ----MN 413
EA QA + KS A+ SH+IR + G+ GL L GS+L+ R+ ++
Sbjct: 419 EARDQAIETARLKSQFLASMSHEIRTPMNGVIGLTGLLL-----GSDLDEKQRRYAEGIS 473
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLD 471
LL ++N +LD SK+EAGK+ L E +F +G L++DVV L P R V V V D
Sbjct: 474 AAGTTLLAVINDVLDFSKLEAGKVLLEEANFQIGRLIDDVVSLVAPPGTRDAVTVGGVCD 533
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
P V GD KL+Q+L NL NAVKFT+EG ++V A + + + G
Sbjct: 534 PR-----LPETVCGDPTKLRQVLLNLAGNAVKFTTEGRVTVTAALDEGQSTG-------- 580
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
+A+ FEV DTG GI E+++ +FE +
Sbjct: 581 ------------------------------PDAVPIRFEVRDTGIGIDGERQEELFEAFT 610
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
Q G GGTGLGL I + LV LMGG I V+ E G G+ F F V L
Sbjct: 611 QADAGTTRRFGGTGLGLAISRDLVELMGGSIG-VESEPGH-GSMFWFTVTL 659
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 15/122 (12%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
RG +LV D+ + R VA L +LG + + NG A+ L +R+ Y
Sbjct: 817 RGHLLLVEDNDIN-RTVALGVLANLGYSADVAVNGLEAVALA-----TRRE--------Y 862
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
I MDC MP M+GY AT +IR E + H+PIIALTA E+ + + AGMD H+ K
Sbjct: 863 RAIFMDCLMPEMDGYAATAEIRRREPEGR-HVPIIALTASALAEDRARCLAAGMDAHIAK 921
Query: 1117 PL 1118
PL
Sbjct: 922 PL 923
>gi|310827685|ref|YP_003960042.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308739419|gb|ADO37079.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612]
Length = 856
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 125/431 (29%), Positives = 200/431 (46%), Gaps = 73/431 (16%)
Query: 219 SIATNDGKVLVQ-------GIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGN 271
SI T++G +++ G + +I+N +F + T Q + + SG
Sbjct: 197 SIVTDEGDFIIESDLPEMAGQGSNLFSILNRKAAFDQGYDLDTILQDIGQGR-----SGM 251
Query: 272 GTLSIGKIHYKAYCSQFEVAGVKSVYAL-AMPRKGLVSLVHRTSKRALILLIVMTVGVLI 330
+L IG H AY + G Y +M + S V S+ +++ GV++
Sbjct: 252 VSLRIGDYHEYAYYTPIPETGW---YVFTSMGYDTVNSQVSSLSR----FMMLAACGVML 304
Query: 331 SMLTFVFKSARAA-RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGIT 389
S+L + S RKE + L+ + E +AER S KS + SH+IR + GI
Sbjct: 305 SVLMILAASFLLYNRKERQIQRLLMAEKE---KAERASQAKSDFLSQMSHEIRTPMNGIV 361
Query: 390 GLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449
G+ E+ + +E L ++++ LL L+N ILD SK+E+GK++L EE FD G+L
Sbjct: 362 GMTEVGRRYTHNPARIENCLDKISLSTQHLLSLVNDILDMSKIESGKIELHEESFDFGQL 421
Query: 450 LEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGH 509
+ + +F+ A +G+E + +G++ ++ GD ++L QIL+NLLSNA+KFT +G
Sbjct: 422 FKALTTVFYTQARERGIEYNV-YVNGALE--DELVGDALRLNQILTNLLSNAMKFTPKGG 478
Query: 510 ISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTF 569
+ C+ +R E+ F
Sbjct: 479 ---KVCM-------------------------------------TAEEIRRGEDRFWIGF 498
Query: 570 EVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKEN 625
EV D+G GI KE +FE + Q G GGTGLGL I + V +MGG I V+ +
Sbjct: 499 EVRDSGCGIAKENLGRIFEVFTQEDSGVARKYGGTGLGLPITKRFVEMMGGSIS-VESQV 557
Query: 626 GERGTCFRFNV 636
G G+CFR +
Sbjct: 558 GS-GSCFRVEI 567
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 12/150 (8%)
Query: 977 YKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ 1036
+ + E D +++ + L+ K +L+ +D+ + +AE L+ A V+ NG+ A++
Sbjct: 702 FDKLEFGAADLQKAPQEDSLKDKNVLIVEDNPLNMEIAEELLKIADARVQGAANGQEAVE 761
Query: 1037 -LVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA 1095
RS P +D ILMD +MP+M+G ATR IR + + +PI+A+TA
Sbjct: 762 AFTRS----------PEGF-FDLILMDMQMPVMDGAAATRVIRALNRSDADAVPIVAMTA 810
Query: 1096 HISGEEADKTIEAGMDVHLGKPLNRDHLME 1125
+ E+ K +++GMD H+ KP + +++
Sbjct: 811 NAFQEDIRKCLDSGMDAHISKPFMLEDILQ 840
>gi|347734151|ref|ZP_08867202.1| sensory box protein [Desulfovibrio sp. A2]
gi|347517020|gb|EGY24214.1| sensory box protein [Desulfovibrio sp. A2]
Length = 1067
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 148/304 (48%), Gaps = 36/304 (11%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E+ + S KS AN SH+IR L I GL EL E P +++ NLR V A
Sbjct: 503 ESARGLHEASRAKSEFLANMSHEIRTPLNAIIGLTELSLQERLP-ADVAENLRASLVSAE 561
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLG++N +LD S+VEAGK++L DF L+ VV + A RKG+ + L D V
Sbjct: 562 ALLGIVNDLLDLSRVEAGKLRLECIDFAPARLVRGVVRVMGHTAERKGLALTLH-IDRDV 620
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ +++GD +L+Q+L N +SNA+KFT EG + V C +P GF
Sbjct: 621 PR--RLRGDPGRLRQVLVNFISNAIKFTDEGGVHVVVCRAEPPG-----------GFGGD 667
Query: 538 ISCLF---YKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
C + GD+ F V DTG GIP++K + +FEN+ Q
Sbjct: 668 AECALPTGMPDAVPTGDIHW------------LCFSVRDTGIGIPEDKHELIFENFRQAD 715
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
GG+GLGL I + +MGG I ++D G+ G+ FR + EA+ + +
Sbjct: 716 ASTARRYGGSGLGLAICRKFTDMMGGRI-VLDSTPGQ-GSVFRVLLPFGAGEAAPHASAA 773
Query: 651 QGEK 654
E+
Sbjct: 774 LSEE 777
>gi|308050680|ref|YP_003914246.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
gi|307632870|gb|ADN77172.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
Length = 1756
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 144/293 (49%), Gaps = 58/293 (19%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + A+ S K+ AN SH+IR + I G+ +LC P + + LR+++ +
Sbjct: 1027 QAKEAADAASKAKTDFLANMSHEIRTPMNAIIGMTQLCLQTDLPPRQADY-LRKIDSASQ 1085
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDG 475
LLG++N +LD SK+EAG+++L +E F + ELLE + DLF A KGVE++ ++P
Sbjct: 1086 SLLGIINDVLDYSKIEAGRLELEQEPFALDELLEQLSDLFAVRAKEKGVELLFAVEPEVP 1145
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHI--SVRACVKKPSAIGNPSLSSSRHG 533
+++ GD ++L QIL NLLSNA+KFT G + ++R P
Sbjct: 1146 -----ARLNGDMLRLGQILINLLSNAIKFTDHGEVVLAIRQLDGAPPG------------ 1188
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
TF V DTG G+ E++ +F+++ Q
Sbjct: 1189 ------------------------------QTRLTFSVRDTGIGMSPEQQARLFQSFSQA 1218
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GGTGLGL I Q LV LMGG I++ G+ F F++ LA+ E
Sbjct: 1219 DSSTTRKYGGTGLGLAISQRLVSLMGGQIQVNSAAGA--GSTFHFSIELALPE 1269
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 86/147 (58%), Gaps = 21/147 (14%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D +RS + K++L+ +D+ + + VA LR LG V E+G AL+ ++SG
Sbjct: 1417 DDTQRS----AIANKRVLLVEDNQVNQEVACEFLRQLGLRVSVAEHGGVALEKLKSG--- 1469
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
YD +LMDC+MP+M+GY+ATR IR++ + +P++A+TA+ E+ +K
Sbjct: 1470 ----------EYDLVLMDCQMPVMDGYQATRAIRDQLN---MTLPVVAMTANAMQEDREK 1516
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
+ AGM+ H+ KP++ L + +YL
Sbjct: 1517 CLAAGMNEHIAKPIDLSQLHRVLWRYL 1543
Score = 43.1 bits (100), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGA 1023
++ +++G GS+ + E+ + L G+++L+ DD+ + E NL G
Sbjct: 1247 IQVNSAAGAGSTFHFSIELALPEQPPQPELFELEGRQVLLVDDNDTALEILERNLSAFGF 1306
Query: 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKR 1083
V + E AL L+ P + ++ D +MP MNG E E +
Sbjct: 1307 DVIPAHSAEQALALL------------PELSDMVLVITDYDMPKMNGLELA-----EAMK 1349
Query: 1084 NQVHIPIIALTAHISGEEA--DKTIEAGMDVHLGKPLNRDHLMEAI 1127
Q H + L G+EA + + G+ L KP N L++ I
Sbjct: 1350 QQGHNTAMVLMISAYGDEALQQQAEQTGIGALLSKPANPSRLLDTI 1395
>gi|42528002|ref|NP_973100.1| sensor histidine kinase/response regulator [Treponema denticola
ATCC 35405]
gi|449111016|ref|ZP_21747615.1| hypothetical protein HMPREF9735_00664 [Treponema denticola ATCC
33521]
gi|449114168|ref|ZP_21750648.1| hypothetical protein HMPREF9721_01166 [Treponema denticola ATCC
35404]
gi|41819047|gb|AAS13019.1| sensor histidine kinase/response regulator [Treponema denticola
ATCC 35405]
gi|448957165|gb|EMB37917.1| hypothetical protein HMPREF9721_01166 [Treponema denticola ATCC
35404]
gi|448959279|gb|EMB40000.1| hypothetical protein HMPREF9735_00664 [Treponema denticola ATCC
33521]
Length = 676
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 144/282 (51%), Gaps = 44/282 (15%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q AE+ + +SL AN SH+IR + I G++EL E E RQ+N A
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELIN-ETNLDEEQSEYTRQVNFSAEV 191
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +LD SK+E+G M + F++ + +E VDL A +KG+E+V+D SD +
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISD-KIP 250
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
F + GD +L+Q+L N + NAVKFT G++SV + + +P +++H F+
Sbjct: 251 DF--IYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDP--YAAKHFFI--- 303
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
FEV DTG G+ E++ +F ++ Q +
Sbjct: 304 -----------------------------LFEVADTGIGVNNEQKSKIFNSFYQGNAAIN 334
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL I ++++ +M G I I K+N RG+ F F +
Sbjct: 335 RKYGGTGLGLAISKNIITMMKGQIGI--KDNIPRGSVFWFKI 374
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G K+LV DD + +++ +I L V +GE A+ S H +D
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAIDTASS----------EH---FD 604
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
I MD +MP +NGYEAT+ +R + PIIA TA E + G++ + KP
Sbjct: 605 IIFMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKP 660
Query: 1118 LNRDHLMEAIK 1128
N+ L E +K
Sbjct: 661 FNKKQLFEMVK 671
>gi|262369862|ref|ZP_06063189.1| sensor protein gacS [Acinetobacter johnsonii SH046]
gi|262314901|gb|EEY95941.1| sensor protein gacS [Acinetobacter johnsonii SH046]
Length = 937
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 142/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA S +KS+ AN SH++R L I G I L + ++ L+ +
Sbjct: 273 ITYRQARDQAISASQSKSVFLANISHELRTPLNSIDGFIHLLLRQDNLNNDQNLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K +++ +
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKIELDTATFDLEEAIFDVMDMLSPLAAQKHIDMAFYYA 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D V GD ++ KQIL+NL+SNA+KFT +G I VRA +++ IG
Sbjct: 393 DNVP---KHVVGDALRFKQILTNLISNAIKFTPDGEIIVRARMEQDD-IG---------- 438
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 439 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + E
Sbjct: 469 DASVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFMVNE 524
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 979 QTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV 1038
Q EE++ E Q G IL DD + V E L L T +G+ AL+++
Sbjct: 649 QPLFEEDEMESFNGQ----GLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQQALEIL 704
Query: 1039 RSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR--EEEKRNQVHIPIIALTAH 1096
+ + D A +D + MD +MP+M+G + TR IR E N +PIIALTAH
Sbjct: 705 QE--RAEHDSKA-----FDLVFMDIQMPVMSGVDTTRAIRALESTIENHKRLPIIALTAH 757
Query: 1097 ISGEEADKTIEAGMDVHLGKP 1117
+E K ++ GMD ++ KP
Sbjct: 758 ALADEKQKLLQVGMDDYVTKP 778
>gi|399889500|ref|ZP_10775377.1| PAS/PAC sensor hybrid histidine kinase [Clostridium arbusti SL206]
Length = 787
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 154/304 (50%), Gaps = 55/304 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q+A++ + KS AN SH+IR + GI G+ +L ++E L + +N
Sbjct: 401 AKQEADKANAAKSQFLANMSHEIRTPMNGILGVAQLLEFTQLNKQQIEY-LDILKSSSNH 459
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGS 476
LL ++NSILD SK+E+GK+QL E F++ E+++ ++ +A +KG+E++ LDP
Sbjct: 460 LLDIINSILDISKIESGKLQLNFEVFNIREVIDMIIKELSVIARKKGIEIMYYLDP---- 515
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+K+ + GD V+L QIL NL++NAVKFT GHI ++
Sbjct: 516 FIKYDLI-GDVVRLNQILINLINNAVKFTDSGHIYLK----------------------- 551
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK-- 594
VN D + ++ F ++DTG GI + + +F+ + Q +
Sbjct: 552 ------------------VNKVFEDTDKVKLEFSIEDTGIGIEDDFKDKIFKIFTQAETT 593
Query: 595 --EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
+ GGTGLGL I + LVR+M GDI + E G +G+ F F ++ + N+ +
Sbjct: 594 YTKKYGGTGLGLAISRELVRMMNGDIWF-ESEIG-KGSTFYFTAEFSLNKRYENNIENKN 651
Query: 653 EKEL 656
KE
Sbjct: 652 SKEF 655
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 23/170 (13%)
Query: 971 GEGSSRYKQTE----------IEEEDGERSQAQKPL--RGKKILVADDSMMLRRVAEINL 1018
G+GS+ Y E IE ++ + Q +K + + K ILV +D+ + R +A L
Sbjct: 626 GKGSTFYFTAEFSLNKRYENNIENKNSKEFQEKKIIEPKEKTILVVEDNEINREIALGFL 685
Query: 1019 RHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078
LG +C NG+ A+ +V N HI D ILMD +MPI+NG+EAT IR
Sbjct: 686 NQLGYKYISCSNGKEAISVVEDRNN--------HI---DIILMDIQMPILNGFEATDTIR 734
Query: 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ EK + H PII +TA+ + +K IE GMD ++ KP + D L +K
Sbjct: 735 KAEKLTENHTPIIGMTAYAMAGDREKAIECGMDDYISKPFSIDTLRIVLK 784
>gi|359446280|ref|ZP_09235975.1| hypothetical protein P20439_2310 [Pseudoalteromonas sp. BSi20439]
gi|358039883|dbj|GAA72224.1| hypothetical protein P20439_2310 [Pseudoalteromonas sp. BSi20439]
Length = 1573
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/357 (32%), Positives = 172/357 (48%), Gaps = 67/357 (18%)
Query: 297 YALAMPRKGLVSLVHRTSKRALILLIVMTVG-----------VLISMLTFVFKSARAARK 345
YA+ + K ++ V T L +L V TVG L S+ T V S + R+
Sbjct: 977 YAIPLNVKSMLDAVIATGDGNLGILCVETVGEPRHWTQGEETYLRSLATLVGSSLVSQRR 1036
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
+ A +K A QA+ + KS A SH+IR + G+ G++EL +E P +
Sbjct: 1037 KQ--TAEKLKV--ALVQAKEAGVAKSQFLATMSHEIRTPMNGVLGMLELIQLEPLP-KHV 1091
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
ET + A+ LL ++N ILD SKVEAGK++L +F+ +L+ V + A KG
Sbjct: 1092 ETKVGIAKQSAHSLLAVINDILDFSKVEAGKVELESINFNARDLIGYVAEAQALSAQGKG 1151
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP 525
+E++LD ++ S +KGD +++Q+L+NLLSNAVKFTS+G + + A + KP+ G
Sbjct: 1152 IEIILDL---VAVEPSHLKGDPSRIRQVLTNLLSNAVKFTSQGEVVISASI-KPTDQG-- 1205
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
+EF V D+G GI KEK+K
Sbjct: 1206 ---------------------------------------LEFKVSVKDSGIGISKEKQKQ 1226
Query: 586 VFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+F + QV GGTGLGL I + L LMGG I V E G +G+ F + L
Sbjct: 1227 LFSPFTQVDASTTREYGGTGLGLAICKQLCELMGGYIS-VSSEIG-KGSVFTAQMIL 1281
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 16/142 (11%)
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
+ +A KP +IL+ +D+ + ++V+ + L+ L V ENG+ A+++ L
Sbjct: 1443 KDEADKP---AEILLVEDNPINQQVSTLMLKKLSCEVTVAENGQQAIEI----------L 1489
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH--IPIIALTAHISGEEADKTI 1106
A + +LMDC+MP+M+GY AT IR Q H I IIALTA+ + + I
Sbjct: 1490 SAHEKGHFSLVLMDCQMPVMDGYSATTAIRNNAAGEQ-HKAIKIIALTANAMESDKQRCI 1548
Query: 1107 EAGMDVHLGKPLNRDHLMEAIK 1128
+AGMD +L KP+ D L + ++
Sbjct: 1549 DAGMDDYLSKPIQLDVLKQKLE 1570
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 10/158 (6%)
Query: 971 GEGSSRYKQTEIEE-EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACE 1029
G+GS Q +EE E+ ER + ILV DD+ R V L H GA VE
Sbjct: 1270 GKGSVFTAQMILEEGEEQERYVPNVNINELTILVVDDNQTNRLVISEQLGHWGAHVELAS 1329
Query: 1030 NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP 1089
+ + AL++ + + +Q+ + YD ++D +MP M+G E + ++ + N +P
Sbjct: 1330 DAKQALEMCENRIKNQQKV-------YDIAVLDMQMPDMDGIELCKILKADA--NYQPMP 1380
Query: 1090 IIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ +T+ E+A + +AG + KP+ L+ A+
Sbjct: 1381 LVMMTSIAGMEDAQRYSDAGFQAYFPKPVTTADLISAL 1418
>gi|392545118|ref|ZP_10292255.1| sensor protein [Pseudoalteromonas rubra ATCC 29570]
Length = 1107
Score = 135 bits (340), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 146/286 (51%), Gaps = 53/286 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC-A 416
EA QAE+ S KS A+ SH+IR + G+ G++ L + E +T+ ++ + A
Sbjct: 557 EAKSQAEQASRAKSEFLASMSHEIRTPMNGVLGMLNLLL--SNELDEQQTHRVKLAMSSA 614
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
N LL L+N ILD SKV+AGK++L DFD+ + ED + A KG+E+VLD D
Sbjct: 615 NSLLNLINDILDFSKVDAGKLELEMLDFDLRGMFEDFAEAAALQAQCKGLELVLDTLD-- 672
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
++ S KGD +++QIL+NL+ NA+KFT +G + ++ +
Sbjct: 673 -IEESMAKGDPSRIRQILANLVGNAIKFTEQGEVIIQGKL-------------------- 711
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
++ +N + + DTG GIPK K +F+++ QV
Sbjct: 712 ---------------------IEQGDNVLRLECAITDTGIGIPKAKSAALFDSFSQVDSS 750
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL IV+ L +LMGGD+ + E GE G+ F F V L
Sbjct: 751 TTRKYGGTGLGLAIVRKLCQLMGGDVSVQSIE-GE-GSTFTFTVLL 794
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 15/139 (10%)
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGA 1050
A KP +IL+A+D+ + + V L+ L +V+ +G AL+ +R Q G
Sbjct: 970 APKP----RILLAEDNQVNQIVTVSMLQKLDIESVDVVSDGNEALRNLREY---QYSEG- 1021
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
Y +LMDC+MP M+G+ AT+ IR+ + ++ I I+ALTA+ + K +EAG
Sbjct: 1022 -----YSLVLMDCQMPEMDGFHATKAIRKGQAGKSNTDITIVALTANAMVGDEKKCLEAG 1076
Query: 1110 MDVHLGKPLNRDHLMEAIK 1128
M+ +L KP++ + L+ +K
Sbjct: 1077 MNDYLSKPVSIEALLTCLK 1095
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 17/162 (10%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQKPLRGKKI--LVADDSMMLRRVAEINLRHLGATVEAC 1028
GEGS+ + T + E+ + Q L ++ LV DD+ R V LRH GA V
Sbjct: 783 GEGST-FTFTVLLEKSAQSKQVLPDLDMSQLELLVVDDNQTNRTVLGQQLRHWGAQVFES 841
Query: 1029 ENGEAALQLVRSGLND-QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH 1087
+G AAL +D +R + +D L+D +MP M+G + + I+ E+KR Q
Sbjct: 842 SSGIAALAECEKRHHDGERRM-------FDIALLDMQMPNMDGAQLGKTIK-EDKRFQ-G 892
Query: 1088 IPIIALTAHISGEEADKTIEA--GMDVHLGKPLNRDHLMEAI 1127
I +I +T+ G + D + A G + KP + L A+
Sbjct: 893 IKLIMMTS--IGHQGDASFFADLGFSGYFPKPATTEDLFNAL 932
>gi|411120682|ref|ZP_11393054.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
gi|410709351|gb|EKQ66866.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
Length = 1333
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 144/279 (51%), Gaps = 29/279 (10%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS+ AN SH++R L I G +L + E + L +N LL L+N IL+
Sbjct: 839 KSIFLANMSHELRTPLNAILGFSQLLSRDPALNQEQQKQLSIINNSGEHLLNLINDILEV 898
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAGK+Q+ E FD+ +LL+++ +F A +G+ + + S V +F V D K
Sbjct: 899 SKIEAGKVQINENRFDLYQLLDNLEQMFQLKARDRGLNLSFEHS-SDVPRF--VVTDEGK 955
Query: 490 LKQILSNLLSNAVKFTSEGHISVR---ACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNK 546
L+Q+L NL+SNA+KFT+ G ++VR + P AI + S + H CL
Sbjct: 956 LRQVLLNLISNAIKFTNSGSVTVRTMSVIEQSPMAIAENTTSINHH------ECL----- 1004
Query: 547 KARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG---GTGLG 603
AV + FEV DTG GI E+ ++F +VQV+ + GTGLG
Sbjct: 1005 -------AVPKLIDSTEQTKLYFEVIDTGCGIAAEEINSLFNAFVQVRTNQQSSEGTGLG 1057
Query: 604 LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
L I + V LMGGDI + K +G+ F F++ + + E
Sbjct: 1058 LTISRHFVNLMGGDITVQSKVG--QGSTFAFDISVKVAE 1094
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 21/136 (15%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D R++ L +G + +NG+ A+ L S PH+ I
Sbjct: 1118 RILIVEDHQQNRQLLVELLSPIGFAIHEAQNGQEAIALWSSW--------NPHL-----I 1164
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVH--------IPIIALTAHISGEEADKTIEAGMD 1111
LMD MP+M+G+EA R+IR +EK Q + II LTA E T AG D
Sbjct: 1165 LMDLRMPVMDGFEAMRQIRNQEKSRQENRNDKKVELTKIIVLTADAFEETKIATFIAGCD 1224
Query: 1112 VHLGKPLNRDHLMEAI 1127
+ KP+ + L+ I
Sbjct: 1225 DFIRKPIQANLLLTKI 1240
>gi|428297287|ref|YP_007135593.1| integral membrane sensor hybrid histidine kinase [Calothrix sp. PCC
6303]
gi|428233831|gb|AFY99620.1| integral membrane sensor hybrid histidine kinase [Calothrix sp. PCC
6303]
Length = 759
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 153/292 (52%), Gaps = 48/292 (16%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
A+ + KS AN SH++R+ L I G ++ G E + N+ + LL L
Sbjct: 294 ADAANQAKSTFIANMSHELRSPLNAILGFAQIMTRSQALGKENQENVGIIYRSGEHLLTL 353
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N++LD SK+EAGK L ++FD+ LL+D+ D+F A K ++++++ + V ++
Sbjct: 354 INNVLDLSKIEAGKTTLNPKNFDLHRLLDDIHDMFQIKAEEKNLQLIME-YEPDVPQY-- 410
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLF 542
++ D VKL+Q+L NL++N +KFT G +S+R +G+
Sbjct: 411 IRTDEVKLRQVLINLINNGLKFTQSGGVSIR--------VGHQ----------------- 445
Query: 543 YKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV---KEGEGG 599
KN A D + +N FEV+D+G GI E+ +FE + Q K+ + G
Sbjct: 446 -KNTLANEDADTIN------------FEVEDSGAGIAPEELGELFEAFSQTTTGKQAQEG 492
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
TGLGL I + V LMGGDI++ K E+GT F F++ + +AN+ +T+
Sbjct: 493 TGLGLPISRQFVSLMGGDIQV--KSQVEKGTTFFFDI--QVTRVNANEIDTR 540
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ DD + R++ L LG ++ NG+ A+ + + PH+ I
Sbjct: 557 RLLIVDDKPLNRQLLIKLLSPLGFQLQEASNGQEAINIWETW--------EPHL-----I 603
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD M +M+GYEAT++I+ K +IA+TA + EE + AG D L KP
Sbjct: 604 WMDMRMTVMDGYEATQRIKNTTKGQAT--AVIAVTASVLEEEKAVVLSAGCDDFLRKPFR 661
Query: 1120 RDHLMEAI 1127
+ + + +
Sbjct: 662 EEEIFQVM 669
>gi|168044281|ref|XP_001774610.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674030|gb|EDQ60544.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 308
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 183/375 (48%), Gaps = 76/375 (20%)
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKM 437
SH++R +A I GL+++ +E E E ++RQ++ CA L+ LLNS LD +KVE+GK+
Sbjct: 3 SHELRTPMACIIGLLDMLLME-NLTVEHEGSIRQIHRCATSLVSLLNSALDIAKVESGKL 61
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
L + +F++ L ++D+F K + + LD +D V K +V GD ++ Q+ +NL
Sbjct: 62 VLEKAEFNLEAELTALIDVFSVQCDNKNLFISLDVAD-DVPK--RVIGDSARVMQVFTNL 118
Query: 498 LSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNA 557
+ N++KFTS+G I VR + P A +S ++ + LE N
Sbjct: 119 VGNSLKFTSKGRIMVRVRIANPEA---------------DVSGKLHQRSFSPFSLERFNE 163
Query: 558 AQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGT-------GLGLGIVQSL 610
A + + FEVDDTG GI R+ +FEN+VQ G T GLGLGIV+SL
Sbjct: 164 ASNAPDLVVLVFEVDDTGPGIEPALREKIFENFVQ---GNASTTRTHGGTGLGLGIVRSL 220
Query: 611 VRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQH 670
V+LMGG I IV+K G F+F++ + A++ D
Sbjct: 221 VQLMGGSIRIVEKSGP--GVVFQFSI--CFQRATSCDCT--------------------- 255
Query: 671 MNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVS 730
P P ++G+ +++ I + + R +A +++ LG++V
Sbjct: 256 ---PFSLPPP-------------------YQGTEIIVGIPDPDCRAVACEWITKLGLSVH 293
Query: 731 AVSRWERLHSTLKRL 745
V WE++ ++ L
Sbjct: 294 QVESWEQILLYMRAL 308
>gi|410029174|ref|ZP_11279010.1| PAS domain-containing protein [Marinilabilia sp. AK2]
Length = 1441
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 149/298 (50%), Gaps = 60/298 (20%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
+ A++E++L A ++AE+ S KS + SH+IR + + G+ L +E
Sbjct: 1050 KEAQRELYL---------AKEKAEQASKVKSQFLSIMSHEIRTPMNAVIGMAHLL-IEDN 1099
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
P + NL+ + A +LLGL+N ILD +K+++GK++L DF++ L+ ++ +
Sbjct: 1100 PRPDQLENLKTLQFSAENLLGLINDILDFTKIDSGKVELEHVDFELKNLINRIIHSYTYQ 1159
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
A K ++++ D + SK+ GD V+L QI++NL+SNAVKFT +G+I +
Sbjct: 1160 AREKALDIIFDYDEEIP---SKLLGDPVRLGQIVNNLVSNAVKFTPQGYIRI-------- 1208
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
A+ + + F+ +DTG GIP+
Sbjct: 1209 ---------------------------------ALTRVDDNSEEIAIKFDFEDTGIGIPE 1235
Query: 581 EKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
EK KT+F+ + Q GGTGLGL IV+ LV L GGDI++ + G GT F F
Sbjct: 1236 EKSKTIFDAFTQASAETTRKFGGTGLGLAIVKKLVDLFGGDIQVKPRIGG--GTLFTF 1291
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 15/142 (10%)
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGA 1050
++K L+ KILVA+D+++ + + L G V ENG+ A++ D+ D
Sbjct: 1312 SEKDLQKAKILVAEDNLVNQVMINKFLMKWGVNEVVIAENGKEAIKEF-----DKTD--- 1363
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGM 1110
+ +L+D +MP M+G+E IR + ++PIIALTA + + E GM
Sbjct: 1364 -----FHLVLLDLQMPEMDGFEVASYIRSHPDIKKRNMPIIALTASSLIDVKQQLDEVGM 1418
Query: 1111 DVHLGKPLNRDHLM-EAIKYLH 1131
D + KP N D L + IK+L+
Sbjct: 1419 DDFIPKPFNPDDLYAKIIKFLN 1440
>gi|350563713|ref|ZP_08932534.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium aerophilum
AL3]
gi|349778848|gb|EGZ33199.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium aerophilum
AL3]
Length = 1253
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 145/286 (50%), Gaps = 52/286 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A ++A+ + KS AN SH+IR + GI G+ EL E P ++ L ++N
Sbjct: 782 QAKREADAANKAKSEFLANMSHEIRTPMNGIIGMSELGLTETDP-QKMHHQLERVNQSGR 840
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS--DG 475
LLG++N ILD SK+EAGK++L + F + +L +++ DLF +A KG+ + + D
Sbjct: 841 LLLGIINDILDFSKIEAGKLELDPQQFQLSQLKDELTDLFEGLAHEKGLAFSVQCACKDN 900
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
V + GD ++L+Q+L+NL+ NAVKFT G VR +K S NP
Sbjct: 901 CV---QCLYGDNLRLRQVLTNLIGNAVKFTDRG--EVRLSIKLDSPANNPF--------- 946
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+ +FE+ DTG G+ E+++ +F + Q
Sbjct: 947 ----------------------------GVFLSFEIQDTGIGMTAEQQQKLFNAFTQADT 978
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGG-DIEIVDKENGERGTCFRFNV 636
+ GGTGLGL I + LVRLMGG DI I + N +G+ F F+V
Sbjct: 979 SITRKHGGTGLGLVISERLVRLMGGDDIHIQSQPN--KGSIFSFSV 1022
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 17/128 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ +D+ + + VA L LG +E ENG+ A++ + Q D +D I
Sbjct: 1050 RVLLVEDNEINQEVAATMLTQLGLALELAENGQIAVEKAK-----QPD--------FDLI 1096
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP+M+GY+A + IR+ +PI+ALTA E+ K + GM+ HL KPLN
Sbjct: 1097 LMDIQMPVMDGYQACQAIRQ----FNASMPIVALTAAAMVEDRAKALSVGMNDHLAKPLN 1152
Query: 1120 RDHLMEAI 1127
D L +
Sbjct: 1153 SDDLYRVL 1160
>gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
Length = 1369
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 147/289 (50%), Gaps = 45/289 (15%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +QAE S KS AN SH+IR + G+ G+ EL ++ E R +
Sbjct: 621 EAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELL-LDTPLTPEQREYARTIRSSGE 679
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDG 475
LL +LN ILD SK+EAG++ L F++ + +E+VV L P A KG+E++ ++P
Sbjct: 680 ALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVP 739
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ +KGD +L+Q+L+NL+ NA+KFT EG + V A + K
Sbjct: 740 PL-----IKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSASLSKEE--------------- 779
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
K K A A +R +E FEV D+G GI +E++K +FE + Q
Sbjct: 780 --------KKKSA-------PAGERG-GEIELRFEVKDSGIGIQEEQQKHLFEAFSQADA 823
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I + LV +MGG+I + K + + G+ F F+ +
Sbjct: 824 STTRRYGGTGLGLAISRQLVEMMGGEIGL--KSSPKEGSTFHFSARFVL 870
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 83/137 (60%), Gaps = 9/137 (6%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV------RSGLNDQRDLGAPHIL 1054
IL+A+D+ + ++VA L+ LG VE +NGE AL+ + + + + G
Sbjct: 1073 ILLAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGSPKK 1132
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP---IIALTAHISGEEADKTIEAGMD 1111
Y +LMD +MP M+G EATR+IR +E+ + +P IIA++AH E+ ++ ++AGMD
Sbjct: 1133 KYAAVLMDIQMPKMDGLEATRRIRSKEEEGVLRLPRTPIIAMSAHAMQEDRERALKAGMD 1192
Query: 1112 VHLGKPLNRDHLMEAIK 1128
++ KP+ ++ L EA++
Sbjct: 1193 HYISKPVKKEQLKEALE 1209
>gi|374622312|ref|ZP_09694838.1| multi-sensor hybrid histidine kinase [Ectothiorhodospira sp. PHS-1]
gi|373941439|gb|EHQ51984.1| multi-sensor hybrid histidine kinase [Ectothiorhodospira sp. PHS-1]
Length = 1126
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 53/288 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+ A + AE + KS A SH+IR + I GL EL + P + + + A
Sbjct: 578 ISAREAAESANQAKSEFLARMSHEIRTPMNAILGLSELVLLNQ-PAGQSRDFMHIIEHSA 636
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAG+M+L+E DFD+ ++L +V++ A KG+ + L+ +
Sbjct: 637 RHLLTIINDILDLSKIEAGRMELVEADFDLHQVLAEVIETLRVPAEDKGLALTLELAP-D 695
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRA-CVKKPSAIGNPSLSSSRHGFL 535
+ ++ +KGD +L Q+L NL+ NAVKFT +G + ++ C+ KP
Sbjct: 696 LPRY--LKGDAHRLTQVLINLIGNAVKFTQQGSVRLQTHCLGKP---------------- 737
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK- 594
+ + FEV DTG+GIP E+ + +F+ + QV
Sbjct: 738 --------------------------DQRLRLAFEVIDTGEGIPPERHREIFQAFTQVDG 771
Query: 595 ---EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL I + LV MGG+I V +GE G+ FRF V +A
Sbjct: 772 SAGRRHGGTGLGLTITRQLVEKMGGEI-TVSSRSGE-GSTFRFTVAMA 817
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 14/135 (10%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
+P R +L+ +D+ VA L+ LG V +N +AA + + D
Sbjct: 836 QPTRSWHVLLVEDTPANVVVAVHLLKRLGHRVTVADNAQAAFGYLTTDCPD--------- 886
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDV 1112
+LMD EMP +NG+EATR+IR+ + +P+IALTAH E ++ + AGM+
Sbjct: 887 ----LVLMDVEMPGINGFEATRRIRQGQAGEACRELPVIALTAHALSEYRERGLAAGMND 942
Query: 1113 HLGKPLNRDHLMEAI 1127
++ KP++ L +AI
Sbjct: 943 YIFKPISLAGLGQAI 957
>gi|428206402|ref|YP_007090755.1| integral membrane sensor hybrid histidine kinase [Chroococcidiopsis
thermalis PCC 7203]
gi|428008323|gb|AFY86886.1| integral membrane sensor hybrid histidine kinase [Chroococcidiopsis
thermalis PCC 7203]
Length = 964
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 148/294 (50%), Gaps = 43/294 (14%)
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
E+ + I+ A AE + KS AN SH++R L I G +L E +
Sbjct: 474 ELRVEKRTIELQHAKIAAELANRAKSEFLANMSHELRTPLNAILGFSQLMNREPSLSNRQ 533
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
+ NLR +N LL L+N +LD +K+E+GKM L DFD+ LL+ + ++ A KG
Sbjct: 534 QENLRIINRSGEHLLSLINDVLDLAKIESGKMTLYPTDFDLYVLLDSIKEMLALRAESKG 593
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP 525
+++ ++ S+ +K D KL+Q+L NLL NA+KFTS G +++R
Sbjct: 594 LQLTIERSNNLP---QYIKTDDKKLRQVLINLLGNAIKFTSVGSVTLRV----------- 639
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
L+ +R Q I+ ++ + FEV DTG GI + +
Sbjct: 640 ELAGAR----QPIT--------------------NNQQPITLHFEVADTGAGIAPTEINS 675
Query: 586 VFENYVQV---KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
VFE +VQ K+ + GTGLGL I +S V LMGG I V+ E G +GT F+FN+
Sbjct: 676 VFEAFVQTETGKQSQQGTGLGLPITKSFVELMGGKI-TVNSELG-KGTVFQFNI 727
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 16/147 (10%)
Query: 982 IEEEDGERSQAQKPLRGK-KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRS 1040
+E++ R +P + K +ILV DD R++ L+ +G V+ NG+ A+++ +
Sbjct: 738 VEQKRTYRVVGIQPNQQKYRILVVDDRWENRQLLLKLLQPIGFQVKEAVNGQDAIKIWQQ 797
Query: 1041 GLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGE 1100
PH+ I MD MP+MNGY+AT++I+ + IIALTA E
Sbjct: 798 W--------QPHL-----IWMDMRMPVMNGYDATQQIKSHLQGQAT--AIIALTASTLEE 842
Query: 1101 EADKTIEAGMDVHLGKPLNRDHLMEAI 1127
E + AG D + KP + + + + +
Sbjct: 843 EKAIVLSAGCDDFVRKPFHEEVIFDKM 869
>gi|300865030|ref|ZP_07109857.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300336967|emb|CBN55007.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1162
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 139/282 (49%), Gaps = 49/282 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + AE + KS+ AN SH++R L I G +L E S L+ L+ +N
Sbjct: 690 QAKEAAEAANQAKSVFLANMSHELRTPLNSILGFTQLMSYENNLTSSLQERLQIINRSGR 749
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N ILD SK+E+G+M L DFD+ LL + ++ K ++++++ + +
Sbjct: 750 HLLDLINDILDLSKIESGRMTLNPSDFDLINLLTSIEEMLQVKVQSKSLQLIVE-RESEL 808
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
F V D KL Q+L NLLSNA+KFT +G I++R
Sbjct: 809 PNF--VHTDEKKLYQVLVNLLSNALKFTQQGSITLR------------------------ 842
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
V A Q+++++ FEV+DTG GI + +F+ +VQ + G
Sbjct: 843 -----------------VRAEQKEKHSCRLCFEVEDTGVGIAPTEIDKLFKVFVQAQAGN 885
Query: 598 G---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GTGLGL I Q LV+LMGG I++ N RG+ F F +
Sbjct: 886 NLSQGTGLGLAISQKLVQLMGGQIQVQSTLN--RGSTFSFEI 925
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV +D RR+ L +G V + G AL L S L PH+ I
Sbjct: 955 RLLVVEDIEENRRLLVEILTSIGFDVREAKQGIEALSLWESWL--------PHL-----I 1001
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP ++GY AT++IRE K + IIALTA + E+ + + G + + KP
Sbjct: 1002 FMDLRMPSLDGYTATKRIRENPKSRET--VIIALTASVFEEDRENVLTNGFNDFISKPFQ 1059
Query: 1120 RDHLMEAI-KYL 1130
+ + + I +YL
Sbjct: 1060 QRDIFDKIAQYL 1071
>gi|303248367|ref|ZP_07334628.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
gi|302490275|gb|EFL50189.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
Length = 1178
Score = 134 bits (338), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 115/367 (31%), Positives = 166/367 (45%), Gaps = 69/367 (18%)
Query: 293 VKSVYALAMPRKGL----VSLVHRTSKRALILLIVMTVGVLISMLTFVFKSA-RAARKEM 347
+++ + L + R+G+ ++ RT + L + I + VL M + A R RK+
Sbjct: 582 MRTAHPLRVTRRGMRLSGITCSRRTPEVWLGVPIRVRQEVLGVMAVLHYTDATRYGRKDA 641
Query: 348 HLCASLIKQME--------------ATQQAERKSMNKSLAFANASHDIRAALAGITGLIE 393
L S+ +Q+ A ++A+R + KS A+ SH+IR + I GL E
Sbjct: 642 ELLLSVAEQLALGVERRRTLDALCAAKEEADRANEAKSRFLASMSHEIRTPMNAILGLTE 701
Query: 394 LCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDV 453
+ + E + + A LL +LN ILD SK+EA +M + D+D+ ELL V
Sbjct: 702 VT-LRTRLSEEQRDYIDTVRDSARHLLDILNDILDFSKIEACQMTVDVVDYDLHELLRRV 760
Query: 454 VDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVR 513
+ A KG+ + LD G V+GD K++Q+L NL+ NAVKFT G ++VR
Sbjct: 761 IKTLGGAARDKGLWLTLDIDVGVP---RNVRGDPGKVRQVLVNLVGNAVKFTEAGGVTVR 817
Query: 514 ACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDD 573
A + P A G P L EV D
Sbjct: 818 AALMMPGAGGLPLLG----------------------------------------VEVAD 837
Query: 574 TGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERG 629
TG GIP E R+ VFE++ Q GGTGLGL I + L RLMGGDI + G G
Sbjct: 838 TGIGIPAEMREAVFESFRQADNSTARRFGGTGLGLAISRELARLMGGDIHVRSTPGG--G 895
Query: 630 TCFRFNV 636
+ F F V
Sbjct: 896 SLFTFTV 902
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 17/145 (11%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
S P R ++LVA+D+ + ++ I+L LG T +GEAAL L+ +G
Sbjct: 919 SDIAAPCRPLRVLVAEDNPVNIKLMSIHLNKLGHTAVVATSGEAALALLAAG-------- 970
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIR----EEEKRNQVHIPIIALTAHISGEEADKT 1105
+D +LMD EMP M+G A R IR ++ IPIIA+TAH++ E +
Sbjct: 971 -----GFDLVLMDVEMPSMDGLTAARVIRAGGTDDAPIACKDIPIIAVTAHVTSEAREAC 1025
Query: 1106 IEAGMDVHLGKPLNRDHLMEAIKYL 1130
AGMD ++GKP+N + L I L
Sbjct: 1026 AAAGMDDYVGKPVNLEELGHIIDRL 1050
>gi|428318322|ref|YP_007116204.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428242002|gb|AFZ07788.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 1219
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 172/331 (51%), Gaps = 26/331 (7%)
Query: 336 VFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELC 395
+F+ A+ E L + +++ A A+ + KS ++ SH++R L I G ++
Sbjct: 666 LFEQAQTEIAERKLAETALQK--AVVAADTANRAKSEFLSSMSHELRTPLNAILGFSQVM 723
Query: 396 YVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVD 455
++ ++ + +L +N LL L+N IL+ SK+EAG+ QL E F++ LL+ + +
Sbjct: 724 VRDSSLNNQHQQHLEIINRAGEHLLALINDILEMSKIEAGRSQLNESSFNLMRLLKTLEE 783
Query: 456 LFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRAC 515
+F A K +++ L+ G V +F V GD KL+QIL NL+ NA+KFT G +++R
Sbjct: 784 MFRLKAKSKKLQLNLEVGQG-VPQF--VSGDEGKLRQILINLVGNAIKFTERGSVTLRVK 840
Query: 516 VKKPSAIG--NPSLSSSRHGFLQSISCLFYK------NKKARGDLEAVNA-------AQR 560
K ++G LS ++ + + K N+ A+ D + V+A Q+
Sbjct: 841 KKVEESLGAETAELSDTQESLAVETAAIQTKPAYAGSNQSAQADFDCVDANSIRPVFLQK 900
Query: 561 DENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG---GTGLGLGIVQSLVRLMGGD 617
E + FE++DTG GI E+ +FE + Q K G+ GTGLGL I V++MGGD
Sbjct: 901 SE-LLRLQFEIEDTGLGIAPEEINKLFEPFEQTKTGQKSQQGTGLGLPISHKFVQMMGGD 959
Query: 618 IEIVDKENGERGTCFRFNVFLAIREASANDN 648
I + K E G+ F F++ +++ S N
Sbjct: 960 ITVSSKH--ELGSKFAFDIQISLATPSEIKN 988
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD V + L LG V + +G+ A+ + PH+ I
Sbjct: 1006 RILVVDDRADNGLVIDRLLSPLGIVVRSARDGQEAIAIWEDW--------QPHL-----I 1052
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD +MP+M+GYEATR+I+ Q I+ALTA + EE + AG D + KP
Sbjct: 1053 WMDMQMPVMDGYEATRQIKAHPLGKQT--VIVALTASVFEEERQTILGAGCDDFMRKPF 1109
>gi|375146975|ref|YP_005009416.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
gi|361061021|gb|AEW00013.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
Length = 1019
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 140/270 (51%), Gaps = 49/270 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
M A + AE S KS AN SH++R + GI G +L ++ + L+ ++ A
Sbjct: 493 MAAKENAEAASKAKSDFMANMSHELRTPMNGIIGFTDLVLTTDLQKTQRDY-LKNVSKSA 551
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSD 474
+LL ++N ILD SK+EAGK+ + E FD+ EL+E+ V++ A KG+EVV +DP
Sbjct: 552 YNLLNIINDILDFSKIEAGKLLIDEVPFDLSELIEETVEILSIKAEEKGLEVVCSIDPEL 611
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
S++ GD +++KQ+L+NL+ NAVKFT+EG I V+ +P+ + N
Sbjct: 612 P-----SQLIGDPLRIKQVLTNLMGNAVKFTAEGEIFVKV---QPNGVHN---------- 653
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
G+L M+ V DTG GIP +K +FE++ Q
Sbjct: 654 -------------CNGNL-----------YMDIDITVKDTGIGIPDDKLHAIFESFTQAD 689
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEI 620
GGTGLGL I +SLV LMGG + +
Sbjct: 690 NSTTRKFGGTGLGLTISKSLVELMGGRLAV 719
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 15/128 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
++V D+ M + ++E+ LR +G V NG+ AL +V + AP D +
Sbjct: 901 LVVEDEPMNMLLISEV-LRKMGVEVLKAGNGKEALVMVA--------VHAP-----DLVF 946
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD MP+M+G+ ATR+IR IPIIALTA E+ ++ +E+GM+ ++ KP
Sbjct: 947 MDVNMPVMDGFAATRQIR-TSTTGLSKIPIIALTADAMEEDKERCLESGMNDYISKPFKL 1005
Query: 1121 DHLMEAIK 1128
+ + ++
Sbjct: 1006 EEIYSVVR 1013
Score = 40.4 bits (93), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
KPL +++LV DD+ + +L + C +G AL ++ + D
Sbjct: 749 KPLL-REVLVVDDNETNCNLMRGIFDYLHIPCKVCYSGAEALSVITQSIRDNE------- 800
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA---HISGEEADKTIEAGM 1110
P+D I+ D +MP+M+G ++I++ K Q I+ L++ + EA+KT G+
Sbjct: 801 -PFDLIITDHQMPVMDGITLVKEIKKLLK-GQTEPFILMLSSLEKTLYQSEAEKT---GI 855
Query: 1111 DVHLGKPL 1118
+ L KP+
Sbjct: 856 NKFLSKPV 863
>gi|428318929|ref|YP_007116811.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428242609|gb|AFZ08395.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1315
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 145/277 (52%), Gaps = 39/277 (14%)
Query: 371 SLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTS 430
S AN SH++R+ L I G ++ E + ++ + LL L+N +LD S
Sbjct: 844 STFLANMSHELRSPLNAIIGFAQVMIRSKTLSPENQEDVAIILRSGEHLLALINQVLDLS 903
Query: 431 KVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKL 490
K+EAG+ + E++FD+ +L++D+ D+F A +KG++++ D D V + + D VKL
Sbjct: 904 KIEAGRTTINEKNFDLYQLIDDLEDMFALKAEQKGLQLIFD-RDAEVPHY--ICTDEVKL 960
Query: 491 KQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARG 550
+Q+L NLL+NA+KFTSEG +S++ K R
Sbjct: 961 RQVLINLLNNAIKFTSEGGVSMQV-------------------------------KGGRR 989
Query: 551 DLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG---EGGTGLGLGIV 607
++ N+ + FEV DTG GI E+ +FE +VQ K G + GTGLGL I
Sbjct: 990 NIHNKNSTDQLPGRYWLHFEVQDTGTGIAAEEIHQLFEAFVQTKTGKDSQEGTGLGLAIS 1049
Query: 608 QSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
+ V+LMGG+I V E G +G F+F++ + + EA+
Sbjct: 1050 RQFVQLMGGEI-TVSSEIG-KGAVFQFDIQVNLVEAT 1084
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ DD + R++ L LG + NG+ A+ + PH+ I
Sbjct: 1106 RLLIVDDKPLNRQLLVKLLSPLGFELREANNGKEAVDIFMEW--------EPHL-----I 1152
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+M+GYEAT++I+ I+ALTA + EE + AG D + KP
Sbjct: 1153 WMDMRMPVMDGYEATKQIKTTTGGQAT--AIVALTASVLEEERAVILSAGCDDFMRKPFR 1210
Query: 1120 RDHLMEAI 1127
+ + A+
Sbjct: 1211 EEDIFVAM 1218
>gi|224075549|ref|XP_002304678.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222842110|gb|EEE79657.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1029
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 135/481 (28%), Positives = 233/481 (48%), Gaps = 57/481 (11%)
Query: 320 LLIVMTVGVLIS--MLTFVFKSA--RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFA 375
L I ++G+L+ ++ ++F + R A+ E + ME ++AE + KS A
Sbjct: 404 LAITTSIGILVIALLIGYIFHATMNRIAKVE----DDYNEMMELKKRAEAADVAKSQFLA 459
Query: 376 NASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND----LLGLLNSILDTSK 431
SH+IR + G+ G++ + +EL+ + A D L+ L+N +LD +K
Sbjct: 460 TVSHEIRTPMNGVLGMLHMLM-----DTELDATQQDYVRTAQDSGKALVSLINEVLDQAK 514
Query: 432 VEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLK 491
+E+GK++L FD+ ++++V+ LF A KGVE+ + SDG + GD + +
Sbjct: 515 IESGKIELEAMQFDLRAIMDEVLALFSGKAHEKGVELAVYVSDGVP---EILIGDPGRFR 571
Query: 492 QILSNLLSNAVKFTSEGHI--SVRACVKKPSAIGNPSLSSSRH---GFLQSISC---LFY 543
QI++NL+ N++KFT +GHI +V + +I + SSSR+ G + C + +
Sbjct: 572 QIITNLMGNSIKFTKKGHIFLTVHLVEEVMDSIDVETESSSRNTLSGLPVADRCRSWVGF 631
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGG 599
K G ++ + D + V+DTG+GIP E + VF ++QV GG
Sbjct: 632 KTFNPEGSSHTLSPSSSD--LINLIVSVEDTGEGIPLEAQPRVFTPFMQVDPSISRKYGG 689
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGG 659
TG+GL I + LV LM GDI V + G+ F F + +N N+++ +K+
Sbjct: 690 TGIGLSISKCLVGLMNGDIGFVSIP--DIGSTFTFTAVFS--NGCSNSNDSKLQKQRLKT 745
Query: 660 DSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLI-ANEERRRIA 718
+ ++ Q M V P P +R R I + G HV L++ N+ I+
Sbjct: 746 QTNTMSSKFQGMTALVVDPKP---VRAKVSRYQI-----QRLGIHVELVLDLNQGLSSIS 797
Query: 719 QKFMENLGINVSAVSR--WERLHSTLKRLKSKFGSIHSPHSS----LGKSDLSSRSDSES 772
EN +N+ + + W++ S +K I S S+ LG S LSSR+++ +
Sbjct: 798 N---ENKVVNMVFIEQEVWDKDSSISALFVNKLQKIVSGVSTKLFLLGNS-LSSRTNTAT 853
Query: 773 A 773
+
Sbjct: 854 S 854
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 14/135 (10%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
+K L G+K+L+ DD+ + VA L+ GA V ++G+ A++L++ PH
Sbjct: 897 RKLLVGRKMLIVDDNKVNLMVAAAALKKYGADVVCADSGQKAIKLLK----------PPH 946
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
+D MD +MP M+G+EATR+IR+ E + HIPI+A+TA + ++ GMD
Sbjct: 947 --KFDACFMDIQMPEMDGFEATRRIRDME--SNWHIPILAMTADVIQATYEECQRCGMDG 1002
Query: 1113 HLGKPLNRDHLMEAI 1127
++ KP + L +
Sbjct: 1003 YVSKPFEAEQLYHEV 1017
>gi|376297280|ref|YP_005168510.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
ND132]
gi|323459842|gb|EGB15707.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
ND132]
Length = 1033
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 152/311 (48%), Gaps = 62/311 (19%)
Query: 347 MHLCASL--IKQMEA-----TQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYV-E 398
MH+ A + IK M A +AE S+ K+ AN SH+IR L G+ G+++L + E
Sbjct: 633 MHMAADITEIKTMAAELEKAMAKAEAASLAKNEFLANMSHEIRTPLNGLLGMLQLMQMSE 692
Query: 399 AGPGSE--LETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDL 456
P L+T L LL +LN ILD SKVE+GK++L F++GE+L+ VV
Sbjct: 693 LAPLQRDYLDTALNS----GRSLLQVLNDILDLSKVESGKLELEPIPFELGEVLDQVVST 748
Query: 457 FHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACV 516
F A +GV + + + F KG +L+QIL NL+ NAVKFT G I VRAC
Sbjct: 749 FRHCAEERGVSMRWEIDETLPRHFVADKG---RLRQILFNLVGNAVKFTESGSIEVRAC- 804
Query: 517 KKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGK 576
P S + G ++ FEV DTG
Sbjct: 805 --------PLDSGAEDGTIR------------------------------LLFEVSDTGI 826
Query: 577 GIPKEKRKTVFENYVQVKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GIP++K TVF+ + QV GTGLGLGIV+ LV LMGG I VD E G +GT
Sbjct: 827 GIPRDKVSTVFDPFTQVDGSSTRKYQGTGLGLGIVRRLVALMGGSI-TVDTEEG-KGTSL 884
Query: 633 RFNVFLAIREA 643
F + I E+
Sbjct: 885 YFTIRTRIIES 895
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D + R V + L LG +GE AL ++R +D L
Sbjct: 914 ILVAEDERVNRVVVQRILEKLGHRTVCVGSGEEALNILRE-------------RSFDLFL 960
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D +MP ++G TR IR E K + IP+IALTAH + D+ I AGM+ ++ KP
Sbjct: 961 TDIQMPGLDGVATTRVIRNELK---LDIPVIALTAHAMQGDRDRFIAAGMNGYVSKPFEI 1017
Query: 1121 DHLMEAIK 1128
D L I+
Sbjct: 1018 DSLQREIE 1025
>gi|449127546|ref|ZP_21763819.1| hypothetical protein HMPREF9733_01222 [Treponema denticola SP33]
gi|448944279|gb|EMB25160.1| hypothetical protein HMPREF9733_01222 [Treponema denticola SP33]
Length = 676
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 168/358 (46%), Gaps = 48/358 (13%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q AE+ + +SL AN SH+IR + I G++EL + E RQ+N A
Sbjct: 133 AKQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELIK-DTNLDEEQSEYTRQVNFSAEV 191
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +LD SK+E+G M + F++ + +E VDL A +KG+E+V+D SD +
Sbjct: 192 LLALVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISD-KIP 250
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
F + GD +L+Q+L N + NAVKFT +G++SV K GNP+ + F
Sbjct: 251 DF--IYGDPARLQQVLLNFVKNAVKFTEKGYVSVSV---KVVLEGNPNNIDTEKRF---- 301
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
FEV DTG G+ E++ +F ++ Q +
Sbjct: 302 ---------------------------SILFEVADTGIGVNAEQKSKIFNSFYQGSASIN 334
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
GGTGLGL I ++++ +M G I I K+N G+ F F + L + A N +K
Sbjct: 335 RKYGGTGLGLAISKNIITMMRGKIGI--KDNIPAGSVFWFKIPLIPSKKKAPHENILLDK 392
Query: 655 E---LAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLI 709
L D+ T L+ M L +L + + L I+ + H+ V+ I
Sbjct: 393 STRFLIVDDNMQTRTILKRMLLKFGFEDIAL-VSSGKQALEIIKTAAEHKNPFNVVFI 449
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 22/157 (14%)
Query: 972 EGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENG 1031
E + KQTE E + G K+LV DD + +++ +I L TV +G
Sbjct: 537 EAGEQSKQTETVHTSDEEN-----FFGCKVLVVDDHPVNQKLLKIILEKTNCTVSTANDG 591
Query: 1032 EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPII 1091
E A ++ ++ +D I MD +MP +NGYEAT+ +RE+ PII
Sbjct: 592 ENA---IKEAAKEE----------FDIIFMDIQMPGINGYEATQILREKGYSK----PII 634
Query: 1092 ALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
A TA E G++ + KP N+ L E +K
Sbjct: 635 ACTAGSQDNERKLCESMGLNDIIKKPFNKKQLFEMVK 671
>gi|190148361|gb|ACE63263.1| histidine kinase 3B [Populus trichocarpa]
Length = 1019
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 135/481 (28%), Positives = 233/481 (48%), Gaps = 57/481 (11%)
Query: 320 LLIVMTVGVLIS--MLTFVFKSA--RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFA 375
L I ++G+L+ ++ ++F + R A+ E + ME ++AE + KS A
Sbjct: 394 LAITTSIGILVIALLIGYIFHATMNRIAKVE----DDYNEMMELKKRAEAADVAKSQFLA 449
Query: 376 NASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND----LLGLLNSILDTSK 431
SH+IR + G+ G++ + +EL+ + A D L+ L+N +LD +K
Sbjct: 450 TVSHEIRTPMNGVLGMLHMLM-----DTELDATQQDYVRTAQDSGKALVSLINEVLDQAK 504
Query: 432 VEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLK 491
+E+GK++L FD+ ++++V+ LF A KGVE+ + SDG + GD + +
Sbjct: 505 IESGKIELEAMQFDLRAIMDEVLALFSGKAHEKGVELAVYVSDGVP---EILIGDPGRFR 561
Query: 492 QILSNLLSNAVKFTSEGHI--SVRACVKKPSAIGNPSLSSSRH---GFLQSISC---LFY 543
QI++NL+ N++KFT +GHI +V + +I + SSSR+ G + C + +
Sbjct: 562 QIITNLMGNSIKFTKKGHIFLTVHLVEEVMDSIDVETESSSRNTLSGLPVADRCRSWVGF 621
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGG 599
K G ++ + D + V+DTG+GIP E + VF ++QV GG
Sbjct: 622 KTFNPEGSSHTLSPSSSD--LINLIVSVEDTGEGIPLEAQPRVFTPFMQVDPSISRKYGG 679
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGG 659
TG+GL I + LV LM GDI V + G+ F F + +N N+++ +K+
Sbjct: 680 TGIGLSISKCLVGLMNGDIGFVSIP--DIGSTFTFTAVFS--NGCSNSNDSKLQKQRLKT 735
Query: 660 DSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLI-ANEERRRIA 718
+ ++ Q M V P P +R R I + G HV L++ N+ I+
Sbjct: 736 QTNTMSSKFQGMTALVVDPKP---VRAKVSRYQI-----QRLGIHVELVLDLNQGLSSIS 787
Query: 719 QKFMENLGINVSAVSR--WERLHSTLKRLKSKFGSIHSPHSS----LGKSDLSSRSDSES 772
EN +N+ + + W++ S +K I S S+ LG S LSSR+++ +
Sbjct: 788 N---ENKVVNMVFIEQEVWDKDSSISALFVNKLQKIVSGVSTKLFLLGNS-LSSRTNTAT 843
Query: 773 A 773
+
Sbjct: 844 S 844
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 14/135 (10%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
+K L G+K+L+ DD+ + VA L+ GA V ++G+ A++L++ PH
Sbjct: 887 RKLLVGRKMLIVDDNKVNLMVAAAALKKYGADVVCADSGQKAIKLLK----------PPH 936
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
+D MD +MP M+G+EATR+IR+ E + HIPI+A+TA + ++ GMD
Sbjct: 937 --KFDACFMDIQMPEMDGFEATRRIRDME--SNWHIPILAMTADVIQATYEECQRCGMDG 992
Query: 1113 HLGKPLNRDHLMEAI 1127
++ KP + L +
Sbjct: 993 YVSKPFEAEQLYHEV 1007
>gi|298528353|ref|ZP_07015757.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512005|gb|EFI35907.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1437
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 142/292 (48%), Gaps = 46/292 (15%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
AE + KS AN SH+IR + G+ G+ L ++ SE + R + A LL +
Sbjct: 692 AEEATKAKSEFLANMSHEIRTPMNGVIGMTGLL-LDTDLDSEQQHYARTVRSSAESLLTV 750
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGSVLKF 480
+N ILD SK+EAG++ + DFD+ +L D + A KG+E++ +DP+ S+
Sbjct: 751 INDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMDPNVPSM--- 807
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS-------RHG 533
V+GD +L+QIL NL+ NAVKFT G + ++ NP+ + R
Sbjct: 808 --VRGDSGRLRQILMNLVGNAVKFTEHGEVEIKVSRMVNDECENPNAETQENSHDLYRSS 865
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
F SCL + F V DTG GIP++K+ ++FE++ QV
Sbjct: 866 FTTQHSCLMH-------------------------FSVRDTGIGIPEDKQDSLFESFSQV 900
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR 641
GGTGLGL I + L +MGG + E RG+ F F V L I+
Sbjct: 901 DASTTRKFGGTGLGLAISRQLAEIMGGTAGLESVEG--RGSTFWFTVRLGIQ 950
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 60/178 (33%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILVA+D+M+ ++VA L+ +G +A NG L +++ +PYD +
Sbjct: 1120 RILVAEDNMVNQQVALGILKKMGLRADAVANGREVLHALQN-------------IPYDLV 1166
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQ---------------------------------- 1085
LMD +MP M+G +ATR+IR E R Q
Sbjct: 1167 LMDVQMPEMDGLKATRRIRASEVRGQKSEIRSQKSEVSDQRLESESQNSSIPESPNSSTP 1226
Query: 1086 ------------VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
IPIIA+TA E+ ++ IEAGMD + KP+N D L + K+L
Sbjct: 1227 KSPNSSIPESQNPRIPIIAMTAGAMQEDRERCIEAGMDDYTAKPVNPDELARVLEKWL 1284
Score = 47.8 bits (112), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 982 IEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSG 1041
I+ E + A L+G + L+ DD+ R + L G E NG AL ++
Sbjct: 949 IQHEQQQERPAPACLQGVRTLIVDDNSTNRETLRVRLGSWGMRSEEAANGSTALSMLHQA 1008
Query: 1042 LNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEE 1101
D P++ ++D +MP M+G R I+E+ + + +++ +G +
Sbjct: 1009 KADND--------PFEVAVLDMQMPDMDGETLGRNIKEDGQLKDTRLIMMSSATGQTG-D 1059
Query: 1102 ADKTIEAGMDVHLGKPL 1118
A + EAG D + KP+
Sbjct: 1060 AKRLHEAGFDSIMNKPV 1076
>gi|359437875|ref|ZP_09227924.1| hypothetical protein P20311_1967 [Pseudoalteromonas sp. BSi20311]
gi|358027362|dbj|GAA64173.1| hypothetical protein P20311_1967 [Pseudoalteromonas sp. BSi20311]
Length = 1573
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 171/357 (47%), Gaps = 67/357 (18%)
Query: 297 YALAMPRKGLVSLVHRTSKRALILLIVMTVG-----------VLISMLTFVFKSARAARK 345
YA+ + K ++ V T L +L TVG L S+ T V S + R+
Sbjct: 977 YAIPLNVKSMLDAVIATGDGNLGILCAETVGEPRHWTQGEETYLRSLATLVGSSLVSQRR 1036
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
+ A +K A QA+ + KS A SH+IR + G+ G++EL +E P +
Sbjct: 1037 KQ--TAEKLKV--ALVQAKEAGVAKSQFLATMSHEIRTPMNGVLGMLELIQLEPLP-KHV 1091
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
ET + A+ LL ++N ILD SKVEAGK++L +F+ +L+ V + A KG
Sbjct: 1092 ETKVGIAKQSAHSLLAVINDILDFSKVEAGKVELESINFNARDLIGYVAEAQALSAQGKG 1151
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP 525
+E++LD ++ S +KGD +++Q+L+NLLSNAVKFTS+G + + A + KP+ G
Sbjct: 1152 IEIILDL---VAVEPSHLKGDPSRIRQVLTNLLSNAVKFTSQGEVVISASI-KPTDQG-- 1205
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
+EF V D+G GI KEK+K
Sbjct: 1206 ---------------------------------------LEFKVSVKDSGIGISKEKQKQ 1226
Query: 586 VFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+F + QV GGTGLGL I + L LMGG I V E G +G+ F + L
Sbjct: 1227 LFSPFTQVDASTTREYGGTGLGLAICKQLCELMGGYIS-VSSEIG-KGSVFTAQMIL 1281
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 14/141 (9%)
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
+ +A KP +IL+ +D+ + ++V+ + L+ L V ENG+ A+++ L
Sbjct: 1443 KDEADKP---AEILLVEDNPINQQVSTLMLKKLSCEVTVAENGQQAIEI----------L 1489
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIE 1107
A + +LMDC+MP+M+GY AT IR Q I IIALTA+ + + I+
Sbjct: 1490 SAHEKGHFSLVLMDCQMPVMDGYSATTAIRNNAAGEQHKAIKIIALTANAMESDKQRCID 1549
Query: 1108 AGMDVHLGKPLNRDHLMEAIK 1128
AGMD +L KP+ D L + ++
Sbjct: 1550 AGMDDYLSKPIQLDVLKQKLE 1570
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 10/158 (6%)
Query: 971 GEGSSRYKQTEIEE-EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACE 1029
G+GS Q +EE E+ ER + ILV DD+ R V L H GA VE
Sbjct: 1270 GKGSVFTAQMILEEGEEQERYVPNVNINELTILVVDDNQTNRLVISEQLGHWGAHVELAS 1329
Query: 1030 NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP 1089
+ + AL++ + + +Q+ + YD ++D +MP M+G E + ++ + N +P
Sbjct: 1330 DAKQALEMCENRIKNQQKV-------YDIAVLDMQMPDMDGIELCKILKADA--NYQPMP 1380
Query: 1090 IIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ +T+ E+A + +AG + KP+ L+ A+
Sbjct: 1381 LVMMTSIAGMEDAQRYSDAGFQAYFPKPVTTADLISAL 1418
>gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74]
gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74]
Length = 1407
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 147/295 (49%), Gaps = 56/295 (18%)
Query: 349 LCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN 408
L + + +A +AE + KS+ A SH+IR L G+ G+ L +E P SE +
Sbjct: 873 LAQQSVLEQQARLEAETANKAKSVFLATMSHEIRTPLNGVIGMTAL--LEDTPLSEEQRE 930
Query: 409 L-RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE 467
+ C LLG++N ILD SK+E+GKM+L ++ ++ LE+V+D+F A + G++
Sbjct: 931 YAHTIRSCGESLLGVINDILDFSKIESGKMELEQQPIELRSCLEEVLDMFAGKAGQTGLD 990
Query: 468 VV--LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP 525
++ +DP L ++ GD ++L+QIL NL+ NAVKFT +G + V +
Sbjct: 991 LIYQIDP-----LVPPQILGDSLRLRQILINLVGNAVKFTHQGEVMVGVQL--------- 1036
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
A R + A+E F V DTG GIP K
Sbjct: 1037 -------------------------------VAVRPDQAVELAFTVRDTGIGIPGSKIGQ 1065
Query: 586 VFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+F+ + QV GGTGLGL I Q L+ LMGG I V+ E G +GT FRF +
Sbjct: 1066 LFKAFSQVDSSHSRQYGGTGLGLIISQRLIELMGGVIR-VESEVG-KGTAFRFTL 1118
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 20/136 (14%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q PL +IL+A+D+ + ++ L LG + NG+ L + G
Sbjct: 1279 QYPL---QILIAEDNPINVKLLVRVLNKLGYSPTVANNGQEVLSRLHEG----------- 1324
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
+D ILMD +MP M+G EATR IR++ R IIALTA E+ + + GM+
Sbjct: 1325 ---FDLILMDIQMPEMDGLEATRLIRQQAIRQPW---IIALTADAMLEDRELCLAVGMND 1378
Query: 1113 HLGKPLNRDHLMEAIK 1128
++ KP L +A++
Sbjct: 1379 YMSKPPVLSQLTKALQ 1394
>gi|358011449|ref|ZP_09143259.1| Sensor protein gacS [Acinetobacter sp. P8-3-8]
Length = 937
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 142/292 (48%), Gaps = 51/292 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A QA + KS+ AN SH++R L I G I L + ++ L+ + +
Sbjct: 280 QARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNDQSLYLQTIRKSSA 339
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K +E+ +D +V
Sbjct: 340 HLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIEMAFYFAD-NV 398
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
K+ V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 399 HKY--VIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG-------------- 441
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
CL + F V D+G G+ RK +FE++ Q V
Sbjct: 442 -QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQGDASV 475
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
GGTGLGL I + LV LM G I D + E+G+ F F + E
Sbjct: 476 TRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFVVNE 527
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLN-DQRDLGAPHILP 1055
R IL DD + V E L L ++G+ AL L++ ++ D++
Sbjct: 665 RDLHILAVDDHLPNLIVLEALLGELNVKTTKAQSGQEALNLIQHRIDHDEK--------A 716
Query: 1056 YDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
+D I MD +MP+M+G + TR IR E + + +PIIALTAH +E K ++ GMD ++
Sbjct: 717 FDLIFMDIQMPVMSGIDTTRAIRSLESTLDDLRMPIIALTAHALADEKQKLLKVGMDDYV 776
Query: 1115 GKP 1117
KP
Sbjct: 777 TKP 779
>gi|224373295|ref|YP_002607667.1| sensor histidine kinase/response regulator [Nautilia profundicola
AmH]
gi|223588528|gb|ACM92264.1| sensor histidine kinase/response regulator [Nautilia profundicola
AmH]
Length = 1030
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 149/290 (51%), Gaps = 56/290 (19%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E+ ++AE + KSL AN SH+IR L GI G +EL +L+ + + A
Sbjct: 383 ESVRKAEEATKAKSLFLANMSHEIRTPLNGILGFLELLNTTDLTEEQLDY-VNTIAQSAK 441
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDG 475
+LL ++N+ILD SK+E+ K+ L DF + E+ ++LF A +K +E+ + P+
Sbjct: 442 NLLQIVNNILDVSKIESNKVSLELIDFKAVDEFENTIELFGTPAAQKNIELTTQISPNIP 501
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFT-SEGHISVRACVKKPSAIGNPSLSSSRHGF 534
S+ +KGD +K+K+IL+NLLSNA+KFT + GHI V+ ++K
Sbjct: 502 SI-----IKGDILKIKEILTNLLSNAIKFTPNNGHIHVKIQLEKII-------------- 542
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+N + FEV D+G G+ +E+++ +FE + Q
Sbjct: 543 ---------------------------DNKAKIYFEVRDSGIGMSEEQKEKIFEAFSQAD 575
Query: 595 EG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
E GGTGLGL IV+S + +MGG I + + N +GT F FN+ I
Sbjct: 576 ESVTRKYGGTGLGLTIVKSYIEMMGGKIYLESELN--KGTKFYFNLMFDI 623
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 12/143 (8%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
E K + K L+A+D+ + +++ + L+ LG + NG A + +N +
Sbjct: 757 AEEKPQHKDIYSLKALIAEDNPINQKLLQTTLKSLGIESDLANNGLEAFN--KYTINPDK 814
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKT 1105
YD I MD +MP+M+G EAT++I E E+ ++ H PIIA+TA++ + ++
Sbjct: 815 ---------YDVIFMDVQMPVMDGLEATQEILEFEQEEEIPHTPIIAVTANVLKGDRERF 865
Query: 1106 IEAGMDVHLGKPLNRDHLMEAIK 1128
+ +GMD ++ KP+ +D L++ ++
Sbjct: 866 LGSGMDEYISKPIEKDALLKILE 888
>gi|334118365|ref|ZP_08492454.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333459372|gb|EGK87985.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1376
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 142/280 (50%), Gaps = 43/280 (15%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH++R L I G +L E + N+R +N LL L+N ILD
Sbjct: 913 KSTFLANMSHELRTPLNAILGFSQLMQRSTNLNREQQENIRIINRSGEHLLALINQILDL 972
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
+K+EAG++ + F + LL D+ ++F AM + ++++ D S V ++ V+ D++K
Sbjct: 973 AKIEAGRITINPTSFQLSSLLNDLEEMFQLQAMEQQLQLIFDCS-SEVPEY--VQTDQMK 1029
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+Q+L NLLSNA+KFT +G I +R +S + +
Sbjct: 1030 LRQVLINLLSNAIKFTKQGVIKLR------------------------VSAFIDRENQ-- 1063
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG---EGGTGLGLGI 606
Q + + FE++DTG GI ++ +F+ +VQ K G + GTGLGL I
Sbjct: 1064 ---------QLPISNYQLHFEIEDTGAGIAADELDKLFQAFVQTKTGTKSQQGTGLGLAI 1114
Query: 607 VQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
Q V+LMGG I V E G RGT F F++ ++ +A A
Sbjct: 1115 SQQFVKLMGGVI-TVRSEVG-RGTTFAFDIPVSAVDAPAT 1152
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 28/137 (20%)
Query: 1000 KILVADDS-----MMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
+IL+ DD ++++ +A N AT NG A+++ S PH+
Sbjct: 1172 RILIVDDQSDNRQLLIKLLAAFNFELQEAT-----NGIEAIEMWSSF--------EPHL- 1217
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
I MD MP+M+G+EAT++I+ K IIA++A + E T+ D +
Sbjct: 1218 ----IFMDMWMPVMDGHEATKRIKATVKGQAT--AIIAVSAGNAEETQTVTVSDDCDDFI 1271
Query: 1115 GKPLNRDHLMEAIKYLH 1131
KP RD E + LH
Sbjct: 1272 HKPF-RD--TEILATLH 1285
>gi|90022762|ref|YP_528589.1| putative periplasmic ligand-binding sensor protein [Saccharophagus
degradans 2-40]
gi|89952362|gb|ABD82377.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
2-40]
Length = 1653
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 159/325 (48%), Gaps = 63/325 (19%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
+V + LI+ + + ++ RA R+ + +L+K A + A R KS A SH+I
Sbjct: 961 LVDWLAPLINTVGQMIENTRAIRERDNAQQALVKAKNAAELAAR---TKSEFLAMMSHEI 1017
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLR-QMNVC---ANDLLGLLNSILDTSKVEAGKM 437
R L G+ G++ L ++LE R Q+++ A LL L+N ILD SKV+AGK+
Sbjct: 1018 RTPLNGVLGMLNLV-----KRTQLEDKQRYQIDIAKSSAESLLNLINDILDFSKVDAGKL 1072
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
L DF++ LLED+ A+ +G E+++D + L+F+ + GD +L+QIL NL
Sbjct: 1073 DLEVVDFNIITLLEDIAHAMAGRALERGNELIIDTTK---LEFTYLSGDPSRLRQILVNL 1129
Query: 498 LSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNA 557
+ NA+KFT G ++V A SL+ + GF +IS
Sbjct: 1130 IGNAIKFTQNGEVTVTA-----------SLTKNTSGFNLNIS------------------ 1160
Query: 558 AQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRL 613
V DTG GI +EK +F + QV GGTGLGL I + L L
Sbjct: 1161 -------------VADTGIGIAEEKIPLLFSAFTQVDASTTRKYGGTGLGLAICKKLCAL 1207
Query: 614 MGGDIEIVDKENGERGTCFRFNVFL 638
MGGDI I +E G+ F F + +
Sbjct: 1208 MGGDINITSQEGN--GSEFSFQILV 1230
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 970 SGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACE 1029
S + S +QT + + Q + +IL+ DD+ + + VA++ L G ++
Sbjct: 1368 SNQAESEQQQTSEKLTLPQSPQGEASQFAARILLVDDNTVNQDVAKMMLEDFGLIIDVAN 1427
Query: 1030 NG-EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVH 1087
NG EA L + + PY ILMDC+MP ++GYE T++IR+ +
Sbjct: 1428 NGLEAIAALDACSIRE----------PYSLILMDCQMPELDGYETTKRIRKGATDFDNTK 1477
Query: 1088 IPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
IPIIA+TA+ + +K I AGMD +L KP+ D L +K
Sbjct: 1478 IPIIAMTANAMKGDKEKCIAAGMDDYLSKPIEADALEHMLK 1518
>gi|357138197|ref|XP_003570684.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
Length = 970
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 162/338 (47%), Gaps = 48/338 (14%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM-- 412
K E QAE + KS A SH+IR + G+ G++++ G++L +
Sbjct: 342 KMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLL-----GTDLTMTQKDFAQ 396
Query: 413 --NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+C L+ L+N +LD +K+EAG+++L FD+ L++DV+ LF + K +E+ +
Sbjct: 397 TAQMCGRALITLINDVLDRAKIEAGRLELEAVPFDLRSLMDDVISLFSSKSREKCIELAV 456
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI-------- 522
D V K V GD + +QIL+NL+ NAVKFT GH+ VR C+ + S +
Sbjct: 457 FVCD-DVPKL--VVGDPWRFRQILTNLVGNAVKFTDRGHVFVRVCLAENSNVEANQVLNV 513
Query: 523 ----GNPSLSSSRHGFLQSIS---------------CLFYKNKKARGDLEAVNAAQRDEN 563
+ + S+ +G L ++S L + +LE + Q D +
Sbjct: 514 TLNGKDGKVESTANGALNTLSGFQAADERNSWEYFKLLLSDKESLSNELEGEKSNQNDSD 573
Query: 564 AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIE 619
+ ++DTG GIP + VF ++Q GGTG+GL I + L LMGG I
Sbjct: 574 HVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAGLMGGQIS 633
Query: 620 IVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELA 657
+ + G+ F F+ A+ + S D ++ ++ L+
Sbjct: 634 FTSRPS--IGSTFTFS---AVVKRSCKDTSSDSKRSLS 666
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 28/151 (18%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + RVA L+ GA V E+G+ A+ L L PH
Sbjct: 824 LVGKNILVVDDNKVNLRVAAAALKKYGAKVHCVESGKDAISL----------LQPPH--H 871
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRN----------------QVHIPIIALTAHISG 1099
+D MD +MP M+G+EATR+IRE EK+ + H P++A+TA +
Sbjct: 872 FDACFMDVQMPEMDGFEATRQIREMEKKANEEQKKLTSTEGSTFVEWHSPVLAMTADVIQ 931
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+K +++GMD ++ KP + + L +A+ L
Sbjct: 932 ATYEKCMKSGMDGYVSKPFDEEQLYQAVSRL 962
>gi|348029065|ref|YP_004871751.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
gi|347946408|gb|AEP29758.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
Length = 1045
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 150/286 (52%), Gaps = 52/286 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+ AT+ A+ S KS A SH+IR + G+ G+I+L ++ S+ L+ A
Sbjct: 304 LNATKAAQEASNAKSEFLARMSHEIRTPMNGVLGMIDLL-LDTRLTSDQTHKLKVAKNSA 362
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+ LL ++N ILD S+VEAG+M++ DF++ + +E+V + KG+E+++D SD
Sbjct: 363 SSLLTIINDILDFSRVEAGRMEIESLDFNLPQQIENVAQTLAIRSDAKGIELIVDVSD-- 420
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
++ V GD V+L+Q+L+NL+SNA+KFT G I VRA
Sbjct: 421 -IQQKMVVGDAVRLRQVLTNLISNAIKFTEVGQIVVRA---------------------- 457
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+ +N Q D +E + V+DTG GIP K + +FE+++QV
Sbjct: 458 ----------------KTIN--QGDTTRLECS--VEDTGIGIPDSKLEHLFESFMQVDTS 497
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GG+GLGL I + L+ LMGG I++ N +GT F F++ L
Sbjct: 498 TTRVYGGSGLGLAICERLIELMGGRIQVSSSIN--KGTIFSFDINL 541
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 80/130 (61%), Gaps = 12/130 (9%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ-LVRSGLNDQRDLGAPHILPYDY 1058
K+L+ +D+ + + VAE L+ G +G A+Q L++S L DQ PY
Sbjct: 708 KVLIVEDNSVNQLVAEGLLKKFGLQYGVAIDGSIAIQTLIQSEL-DQ---------PYTL 757
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
ILMDC+MP+++GY+AT KIR+ + + +IPIIA+TA+ + +K +++GM+ ++ KP
Sbjct: 758 ILMDCQMPVLDGYKATAKIRQGDAGERYKNIPIIAMTANAMKGDREKCLQSGMNDYVPKP 817
Query: 1118 LNRDHLMEAI 1127
++ L +A+
Sbjct: 818 IDVGVLQKAL 827
>gi|209965866|ref|YP_002298781.1| sensory box histidine kinase [Rhodospirillum centenum SW]
gi|209959332|gb|ACI99968.1| sensory box histidine kinase [Rhodospirillum centenum SW]
Length = 1057
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 144/305 (47%), Gaps = 50/305 (16%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R R+ + A ++ A AE S KS A SH++R + G+ G+I+L +
Sbjct: 652 RLERQASEMTALALELQTARDAAEAASRAKSRFLAVMSHELRTPMTGVIGMIDLL-LGTT 710
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
S+ L ++ A+ LL +LN ILD SK+EAG++ + + LL+DV+DLF P
Sbjct: 711 VTSDQRRYLETLHSSADALLVVLNDILDFSKIEAGQLVIEAIPVRLQALLDDVIDLFAPA 770
Query: 461 AMRKGVEV-VLDPSDGSVLKFSK-VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK 518
A +KGVE+ V P + K + GD +L+Q+L NL+ NAVKFT G I +RA
Sbjct: 771 ASQKGVELRVRQPERRQKNRLPKELTGDPTRLRQVLMNLVGNAVKFTPAGSIELRA---- 826
Query: 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
A + D FEV+DTG GI
Sbjct: 827 -------------------------------------EAQREDGGTWLLRFEVEDTGIGI 849
Query: 579 PKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
P + +FE++ Q GGTGLGL I + LV +MGG+I + + RG+ F F
Sbjct: 850 PPDVVPMLFESFTQADASTTRRFGGTGLGLAICKRLVTMMGGEIGV--RSEPRRGSVFWF 907
Query: 635 NVFLA 639
V +A
Sbjct: 908 TVRMA 912
Score = 56.6 bits (135), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G ++L+A+D+ + R + L +G +A NG A++ V QR+ PYD
Sbjct: 934 GARVLLAEDNPVNRLLITTMLERMGFRPDAVANGREAVEAV------QRE-------PYD 980
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGM-DVHLGK 1116
+LMD +MP M+G A IR+ + +PI+ALTA E + + A + D +L K
Sbjct: 981 VVLMDMQMPEMDGDTAAGVIRDLPE-PLCRLPIVALTADALPENRARHLRARLFDEYLTK 1039
Query: 1117 PLNRDHLMEAIKYL 1130
P++ L E I L
Sbjct: 1040 PIDWPRLGEVIAAL 1053
>gi|404494931|ref|YP_006719037.1| sensor histidine kinase response regulator, Cache_2 and HAMP
domain-containing [Geobacter metallireducens GS-15]
gi|418067585|ref|ZP_12704924.1| integral membrane sensor hybrid histidine kinase [Geobacter
metallireducens RCH3]
gi|78192559|gb|ABB30326.1| sensor histidine kinase response regulator, Cache_2 and HAMP
domain-containing [Geobacter metallireducens GS-15]
gi|373558583|gb|EHP84919.1| integral membrane sensor hybrid histidine kinase [Geobacter
metallireducens RCH3]
Length = 661
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 131/467 (28%), Positives = 200/467 (42%), Gaps = 101/467 (21%)
Query: 338 KSARAARKEMHLCASLIKQMEATQ-QAERKSMNKSLAFANASHDIRAALAGITGLIELCY 396
KS + +H ++ ++ ++ +AE S K AN SH+IR + I G+ EL
Sbjct: 245 KSHDETHQVLHTIERMVNDLKRSRDEAESASRMKGEFLANMSHEIRTPMNAIIGMTELTL 304
Query: 397 VEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDL 456
S+ E NL + A LLGLLN ILD S++EAG++ L + FD+ +E +D+
Sbjct: 305 ETPLSPSQRE-NLEIIGSSAESLLGLLNDILDFSRIEAGRLLLEKVPFDLRNTVEGALDV 363
Query: 457 FHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACV 516
P A KG+E++LD + F GD +L+Q+L NLLSNAVKFT++G + ++
Sbjct: 364 VAPQAHGKGLELILDVARDLPEAFI---GDPTRLRQVLINLLSNAVKFTAKGEVGLK--- 417
Query: 517 KKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGK 576
+E ++ D+ M F V DTG
Sbjct: 418 -----------------------------------VERAPSSGTDDGVM-LLFTVSDTGI 441
Query: 577 GIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GIP +K +FE++ Q GG+GLGL I ++LV +MGGDI + K G+ F
Sbjct: 442 GIPADKLSLIFESFTQADGSTTRKYGGSGLGLAICRALVSMMGGDISV--KSAVGVGSTF 499
Query: 633 RFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLN 692
RF L G LQ+ + + PR
Sbjct: 500 RFTARL-------------------------GTCALQNREIR----------QAGIPRF- 523
Query: 693 ILSPGSRHEGSHVVLLIA--NEERRRIAQKFMENLGINVSAVSRWERLHSTLK--RLKSK 748
G V +L+A N ++++ +E +G V AV + S +K R
Sbjct: 524 ---------GREVKILLAEDNPMNLKVSRLLLEMMGCQVVAVENGGDVVSAMKGERFDVV 574
Query: 749 FGSIHSPHSSLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKR 795
I P ++ RS SE + P+ AM T H L+GY++
Sbjct: 575 LMDIQMPVLDGLEATRVIRSGSERGIDQTTPVIAM--TAHALKGYEK 619
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 985 EDGERSQAQKPLRGK--KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGL 1042
++ E QA P G+ KIL+A+D+ M +V+ + L +G V A ENG V S +
Sbjct: 511 QNREIRQAGIPRFGREVKILLAEDNPMNLKVSRLLLEMMGCQVVAVENGGD----VVSAM 566
Query: 1043 NDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTAHISGEE 1101
+R +D +LMD +MP+++G EATR IR +R P+IA+TAH
Sbjct: 567 KGER---------FDVVLMDIQMPVLDGLEATRVIRSGSERGIDQTTPVIAMTAHALKGY 617
Query: 1102 ADKTIEAGMDVHLGKPLNRDHLMEAI 1127
EAGM+ + KP+ L I
Sbjct: 618 EKVCHEAGMNDFISKPVRAGELYNVI 643
>gi|126738369|ref|ZP_01754090.1| sensor histidine kinase/response regulator [Roseobacter sp.
SK209-2-6]
gi|126720866|gb|EBA17571.1| sensor histidine kinase/response regulator [Roseobacter sp.
SK209-2-6]
Length = 764
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 145/288 (50%), Gaps = 50/288 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE + KS AN SH+IR + G+ G+ EL + E + +
Sbjct: 205 ARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLS-DTSLSEEQKLYANTIKNSGEA 263
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N +LD SK+EA KM L EE FD+ + ++V L P A KG+ +++ D +
Sbjct: 264 LLVIINDVLDYSKIEADKMVLHEEPFDLERAIHEIVMLLQPTARDKGLTMLV---DYDLF 320
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
++ GDR +++Q+++NL NAVKFT+EGH+++R + I NP + S+
Sbjct: 321 LPTRFVGDRGRIRQVMTNLAGNAVKFTNEGHVTLRV-----TGISNPDEGTC------SV 369
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG 598
CL ++DTG GIP +K VF + QV++
Sbjct: 370 HCL-----------------------------IEDTGIGIPADKVDHVFGEFNQVEDERN 400
Query: 599 ----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GTGLGL I + L+ LM G+I V+ + GE G+CF F + L + E
Sbjct: 401 RKFEGTGLGLAISKKLIELMDGEI-WVESDEGE-GSCFGFRIPLPVAE 446
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LR ++L A+D+ + V ++ + NG AL L S
Sbjct: 629 LRQMRVLAAEDNKTNQLVFRKMVKSYNIDLCFANNGLEALNLYES-------------FK 675
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D I MD MP M+G EAT++IR+ E H+PI+ALTAH +++ + AG+D +L
Sbjct: 676 PDLIFMDISMPEMDGKEATQEIRKIEAETGKHVPIVALTAHAMSGDSEGILAAGLDHYLT 735
Query: 1116 KPLNRDHLMEAIK 1128
KPL + + E I+
Sbjct: 736 KPLRKGLIGEKIE 748
>gi|350563582|ref|ZP_08932403.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium
aerophilum AL3]
gi|349778717|gb|EGZ33068.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium
aerophilum AL3]
Length = 932
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 153/299 (51%), Gaps = 56/299 (18%)
Query: 355 KQME-ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
+Q+E A Q+AE + KS AN SH+IR + GI GL EL E PG ++ L ++N
Sbjct: 398 EQLERARQEAELANSAKSEFLANMSHEIRTPMNGIIGLSELGMSETNPG-KMRDKLEKVN 456
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP- 472
LLG++N ILD SK+EAGKM L + F + LL+ + LF A +KG+++V D
Sbjct: 457 RSGRLLLGIINDILDFSKIEAGKMSLDPQPFLLSTLLDHLHSLFAHTAEQKGLQLVFDVE 516
Query: 473 -SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
+DG + D+++L Q+LSNL++NA+KFTS+G + +R
Sbjct: 517 GNDGLC-----IVADQLRLHQVLSNLINNAIKFTSQGSVVLRIS---------------- 555
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
A++ +N FE+ D+G G+ +E+ +F+ +
Sbjct: 556 ------------------------RASKGTDNQAWLRFEIADSGIGMTEEQASKLFKAFS 591
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGD-IEIVDKENGERGTCFRFNVFLAIREASA 645
Q GGTGLGL I Q L +LMG + IE+ K +G+CF F++ + + E +A
Sbjct: 592 QADTSTTRKYGGTGLGLVISQRLAKLMGANKIEV--KTQFNQGSCFWFDLPVELCEPAA 648
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 17/129 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ + + VA L+ G V+ ENG+ A++ ++ +D IL
Sbjct: 671 VLLVEDNEINQIVAAEQLKKAGLVVDLAENGQIAVEKAQNQ-------------AFDLIL 717
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP+M GYEATRKIR + +PIIALTA E+ +K + GM HL KPLN
Sbjct: 718 MDIQMPVMGGYEATRKIRAFNAK----VPIIALTAAAMIEDREKALAVGMQDHLSKPLNT 773
Query: 1121 DHLMEAIKY 1129
L+ + +
Sbjct: 774 AELISVLNH 782
>gi|242066054|ref|XP_002454316.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
gi|241934147|gb|EES07292.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
Length = 973
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 159/352 (45%), Gaps = 45/352 (12%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
I +G+ + + + A A + + K E QAE + KS A SH+I
Sbjct: 311 ITNPLGLFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATVSHEI 370
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGLLNSILDTSKVEAGKM 437
R + G+ G++++ G++L + +C L+ L+N +LD +K+EAGK+
Sbjct: 371 RTPMNGVLGMLDMLL-----GTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKL 425
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
+L FD+ L++DV+ LF + K +E+ + D V K V GD + +QIL+NL
Sbjct: 426 ELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCD-DVPKV--VLGDPWRFRQILTNL 482
Query: 498 LSNAVKFTSEGHISVRACVKKPSAI-GNPSL--------------------------SSS 530
+ NAVKFT GH+ VR C+ + S + N L ++
Sbjct: 483 VGNAVKFTERGHVFVRVCLAENSNMEANQVLHGTMNGKDGKVESTTNGAFNTLSGFEAAD 542
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
R Q L + DLE N+ D + + ++DTG GIP + + VF +
Sbjct: 543 RRNSWQYFKLLLSNKESLLDDLEGENSNLSDSDHVTLAISIEDTGVGIPLQAQDRVFTPF 602
Query: 591 VQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+Q GGTG+GL I + L LMGG I + G+ F F+ L
Sbjct: 603 MQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPF--VGSTFTFSATL 652
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 29/152 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + RVA L+ GA V E+G+ A+ L L PH
Sbjct: 825 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISL----------LQPPH--S 872
Query: 1056 YDYILMDCEMPIMNGYEATRKIRE------EEKRNQV-----------HIPIIALTAHIS 1098
+ MD +MP M+G+EATR+IR+ EE++N++ +P++A+TA +
Sbjct: 873 FHACFMDVQMPEMDGFEATRQIRQMEMKANEERKNKLSLTEASTFVEYRLPVLAMTADVI 932
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
++ I++GMD ++ KP + + L + + L
Sbjct: 933 QATYEECIKSGMDGYVSKPFDEEQLCQVVSRL 964
>gi|449119179|ref|ZP_21755578.1| hypothetical protein HMPREF9725_01043 [Treponema denticola H1-T]
gi|449121571|ref|ZP_21757918.1| hypothetical protein HMPREF9727_00678 [Treponema denticola MYR-T]
gi|448950170|gb|EMB30993.1| hypothetical protein HMPREF9727_00678 [Treponema denticola MYR-T]
gi|448951105|gb|EMB31921.1| hypothetical protein HMPREF9725_01043 [Treponema denticola H1-T]
Length = 676
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 108/361 (29%), Positives = 172/361 (47%), Gaps = 54/361 (14%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q AE+ + +SL AN SH+IR + I ++EL E E RQ+N A
Sbjct: 133 ARQDAEKANSMRSLFLANVSHEIRTPIQTIIDMMELIN-ETNLDEEQSEYTRQVNFSAEV 191
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +LD SK+E+G M + F++ + +E VDL A +KG+E+V+D SD +
Sbjct: 192 LLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISD-KIP 250
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
F + GD +L+Q+L N + NAVKFT G++SV + + +P +++H F+
Sbjct: 251 DF--IYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDP--YAAKHFFI--- 303
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
FEV DTG G+ E++ +F ++ Q +
Sbjct: 304 -----------------------------LFEVADTGIGVNNEQKSKIFNSFYQGNAAIN 334
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL------AIREASANDN 648
GGTGLGL I ++++ +M G I I K+N RG+ F F + L A E+ D
Sbjct: 335 RKYGGTGLGLAISKNIITMMKGQIGI--KDNIPRGSVFWFKIPLVPSKKKAPHESILLDK 392
Query: 649 NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLL 708
NT + L D+ T L+ M L +L + + + ++ + H+ V+
Sbjct: 393 NT---RFLIVDDNMQTRTILKRMLLKFGFEDIAL-VSSGEQAIGVMKTAAEHKNPFNVVF 448
Query: 709 I 709
I
Sbjct: 449 I 449
Score = 56.6 bits (135), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G K+LV DD + +++ +I L V +GE A+ S H +D
Sbjct: 558 GCKVLVVDDHPVNQKLLKIILEKAHCIVSTANDGEEAIDTASS----------EH---FD 604
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
I MD +MP +NGYEAT+ +R + PIIA TA E + G++ + KP
Sbjct: 605 IIFMDIQMPGINGYEATQILRGKGYSR----PIIACTAGSQDNERNLCKSMGLNDIIKKP 660
Query: 1118 LNRDHLMEAIK 1128
N+ L E +K
Sbjct: 661 FNKKQLFEMVK 671
>gi|158338757|ref|YP_001519934.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158308998|gb|ABW30615.1| two-component hybrid sensor and regulator, putative [Acaryochloris
marina MBIC11017]
Length = 834
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 47/280 (16%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q+A++ + KS A+ SH++R L I G +L + ++ + L+ +N
Sbjct: 360 ARQKADQANRAKSEFLASMSHELRTPLNAILGFSQLMSEDQAISTQQQNTLQIINRSGEH 419
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +LD SK+EAG+ L DF++ LL+ + D+F+ A KG+++ L D +
Sbjct: 420 LLELINDVLDMSKIEAGRTTLNPADFNLHGLLQSLYDMFNLKAQSKGLKLALK-LDDHLP 478
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+F + GD KL+Q+L NL+ NA+KFT G +S+ A + + + G SL
Sbjct: 479 QF--IHGDESKLRQVLINLIGNAIKFTEAGEVSITAGMAEQTGDGELSL----------- 525
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK--EG 596
TF V+D+G GI ++ + +F+ ++Q K +
Sbjct: 526 -----------------------------TFAVEDSGPGIAPDEVERIFDPFIQAKSSQA 556
Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ GTGLGL I VRLM GDI + K + RG+ FRF +
Sbjct: 557 QQGTGLGLAISAQFVRLMKGDISVCSKLS--RGSIFRFTI 594
Score = 47.4 bits (111), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D + + + + L +G V+ NG A+ Q H+ I
Sbjct: 623 RILVVEDHLDSQLLLQSWLTSVGFEVKTANNGREAV--------SQFQAWHSHL-----I 669
Query: 1060 LMDCEMPIMNGYEATRKIRE--EEKRNQVHIPII-ALTAHISGEEADKTIEAGMDVHLGK 1116
MD MP+M+G +ATR IR +E +Q P+I ALTA + E +K + AG + + K
Sbjct: 670 WMDMRMPVMDGMQATRAIRALVQESESQAPEPVILALTASVFEENREKILSAGCNKFVRK 729
Query: 1117 P 1117
P
Sbjct: 730 P 730
>gi|333995699|ref|YP_004528312.1| sensor histidine kinase/response regulator [Treponema
azotonutricium ZAS-9]
gi|333736045|gb|AEF81994.1| sensor histidine kinase/response regulator [Treponema
azotonutricium ZAS-9]
Length = 848
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 141/287 (49%), Gaps = 54/287 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+E + AE+ KS AN SH+IR + I G++EL + + E + Q+ A
Sbjct: 141 LEDKEIAEKAMEAKSQFLANMSHEIRTPIQTIIGMVELLQDTSLDHEQSEYS-SQVKFSA 199
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDG 475
LL L+N ILD SK+EAGKM+L DFD+ + +E V++ A RKG+ + D P +
Sbjct: 200 EVLLSLINDILDFSKIEAGKMELEHIDFDLEQTIEQAVEMISMEAHRKGLSIATDVPLEA 259
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ ++GD K +QIL NL NAVKFT EG ++V A + +
Sbjct: 260 CII----IRGDPNKFRQILINLAKNAVKFTKEGGVTVTAQLTE----------------- 298
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
G EA+ + V DTG GI +E R +F ++Q
Sbjct: 299 -------------LGKQEAIRVS------------VHDTGIGISEEARSRLFTTFMQADA 333
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I ++LV LMGG IE+V E G G+ FRF + L
Sbjct: 334 SNTRRFGGTGLGLAISKNLVELMGGIIEMVPGEEG--GSVFRFTIPL 378
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 21/172 (12%)
Query: 953 RRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKK----ILVADDSM 1008
RR++ + L + E + +E+E E ++ P R + +L+A+D
Sbjct: 510 RRNLAATINTALNKNEETDEPAEMEPVSELEALPDEEAKRPPPARANENKPTVLIAEDHP 569
Query: 1009 MLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM 1068
+ +++ + + LG ++G+ A++ L + L I MD +MP M
Sbjct: 570 VNQKLFAMIMDKLGYPSILADDGQDAME---KALANNIAL----------IFMDIQMPRM 616
Query: 1069 NGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
NGYEAT +R++ + PIIA+TA +E + + G+D L KP R
Sbjct: 617 NGYEATENLRKKGFKK----PIIAVTASAFADEREHCLSIGIDDILTKPFKR 664
Score = 43.1 bits (100), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
ILV DD R + L LG +E +G+ AL+L+R A P+
Sbjct: 399 ILVVDDRSRPRTITCSYLVDLGYRRIEPASSGDEALKLMREA--------AARGTPFKIC 450
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+D MP+M+G+ +I +EK N + I+ + + G + T+ ++ KP+
Sbjct: 451 FIDMIMPVMDGWRLAAEIHNDEKINNADL-ILMVPHGLLGTDTKMTLLRWFKAYISKPIK 509
Query: 1120 RDHLMEAI 1127
R +L I
Sbjct: 510 RRNLAATI 517
>gi|334117195|ref|ZP_08491287.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333462015|gb|EGK90620.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 856
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 173/395 (43%), Gaps = 76/395 (19%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET--NLRQMNVCANDLLGLLNSIL 427
KS AN SH++R L I G ++ +E P +E N+R + LL L+N +L
Sbjct: 322 KSTFLANMSHELRTPLNSILGFAQI--MEPSPDLSVENRENMRIIRRSGEHLLTLINEVL 379
Query: 428 DTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDR 487
D SK+EAG+M L ++FD+ LL+D+ D+F + +++ D V ++ V+ D
Sbjct: 380 DLSKIEAGRMTLNPKNFDLYRLLDDLQDMFQLRVENQDLQLRFQ-RDADVPQY--VRADD 436
Query: 488 VKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKK 547
+KL+Q+L NLLSNA+KFT G I +R + S + L S + F +
Sbjct: 437 IKLRQVLINLLSNAIKFTQTGEIILRVIKLEKSGYLD---------LLDSPTACFDTTRS 487
Query: 548 ----ARGDLEAVNAAQRDEN------AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+R + RDE A FE++DTG GI E+ +F+ +VQ G+
Sbjct: 488 IRDFSRTSSDFARDRWRDEAEDSTVPAFFLLFEIEDTGVGIAPEELGNIFKAFVQTASGK 547
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
GTGLGL I + VRLMGG EIV + E GT F+F
Sbjct: 548 KNPKGTGLGLKISRQFVRLMGG--EIVVESELELGTTFKF-------------------- 585
Query: 655 ELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEER 714
E+ G A + +N V P N P IL R E+
Sbjct: 586 EIPVGAVYAAELPDPQLNREVSGLEP------NQPCYRILIVDDR------------EDN 627
Query: 715 RRIAQKFMENLGINV-------SAVSRWERLHSTL 742
R++ K + LG V A+ WE H L
Sbjct: 628 RQLLVKMLSPLGFGVEQATNGQEAIEMWENWHPHL 662
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 35/154 (22%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ DD R++ L LG VE NG+ A+++ + PH+ I
Sbjct: 617 RILIVDDREDNRQLLVKMLSPLGFGVEQATNGQEAIEMWENW--------HPHL-----I 663
Query: 1060 LMDCEMPIMNGYEATRKI------REEEKR-----NQVH----IP-IIALTAHISGEEAD 1103
LMD MP+M+GYEAT++I RE+E++ N H IP IIALTA +
Sbjct: 664 LMDVRMPVMDGYEATKQIKARIKQREQEQQGNGEMNISHPDSPIPKIIALTASTIEGKRS 723
Query: 1104 KTIEAGMDVHLGKPLNRDHLMEA------IKYLH 1131
+ G D + KP + + + +KY++
Sbjct: 724 FALLVGCDDFISKPFRKTDIFDTLSKHLGVKYVY 757
>gi|403051784|ref|ZP_10906268.1| barA [Acinetobacter bereziniae LMG 1003]
Length = 934
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 139/292 (47%), Gaps = 51/292 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A QA + KS+ AN SH++R L I G I L + ++ L+ + +
Sbjct: 278 QARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNDQSLYLQTIRKSSA 337
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K +E+ +D
Sbjct: 338 HLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIEMAFYFADNVP 397
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
V GD ++ KQ+L+NL+SNA+KFT +G I VRA ++ IG
Sbjct: 398 ---KHVIGDALRFKQVLTNLISNAIKFTPDGEIIVRARMEHDD-IG-------------- 439
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
CL + F V D+G G+ RK +FE++ Q V
Sbjct: 440 -QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
GGTGLGL I + LV LM G I D + E+G+ F F L E
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAMLTTNE 525
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 10/130 (7%)
Query: 991 QAQKPLRGK--KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
+ K +G+ IL DD + V E L L ++G+ AL +++ +
Sbjct: 655 EQHKDFKGQDLHILAVDDHLPNLIVLEALLGELNVKTTKAQSGQEALTIIQQAVEQ---- 710
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIE 1107
G+ P+D I MD +MP+M+G + TR IR E + + +PIIALTAH +E K ++
Sbjct: 711 GSK---PFDLIFMDIQMPVMSGIDTTRAIRSLESTLDGMRMPIIALTAHALADEKQKLLK 767
Query: 1108 AGMDVHLGKP 1117
GMD ++ KP
Sbjct: 768 VGMDDYVTKP 777
>gi|254411326|ref|ZP_05025103.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196181827|gb|EDX76814.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1210
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 150/301 (49%), Gaps = 47/301 (15%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A AE + KS+ AN SH++R L I G ++ + E + NL +N N
Sbjct: 707 QAKADAEAANQAKSMFLANMSHELRTPLNIILGFTQVMSRDPAITPEEQENLDIINKSGN 766
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +LD SK+EAG + + E FD+ L+ + ++F A KG+++ L+ + V
Sbjct: 767 HLLSLINDVLDLSKIEAGCISVEESRFDLIALMRSLQEMFQHKARAKGLQLHLNIA-ADV 825
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN-----------PS 526
+ ++ D KL+Q+L NLLSNA+KFT G I++R + K A GN P
Sbjct: 826 PHY--IQADSNKLRQVLINLLSNAIKFTQNGSINLRVALLK--AEGNDHGSDAEDMITPP 881
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTV 586
S +RHG A FEV DTG GI + ++
Sbjct: 882 SSQTRHG--------------------------TSLQASHLHFEVSDTGVGIAPTELGSI 915
Query: 587 FENYVQVKEGE---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
F+ ++Q G+ GTGLGL I + V+LMGGDI++ + N +G+ F F + + + +A
Sbjct: 916 FDAFIQTHAGKVANEGTGLGLAISRKFVQLMGGDIQVSSQLN--QGSTFSFEIPVHLADA 973
Query: 644 S 644
S
Sbjct: 974 S 974
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+I+V DD R++ L G V ENG+ AL L + Q DL I
Sbjct: 996 RIIVTDDKPENRQILVKLLTFPGLEVREVENGQEALTLWQQW---QPDL----------I 1042
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MPIM+GY+AT++IR + +Q I IIALTA+ S + +EAG + ++ KP
Sbjct: 1043 WMDMRMPIMDGYQATQQIRCQSD-SQTPI-IIALTAYASKSDRASALEAGCNDYVTKPFQ 1100
Query: 1120 RDHLM 1124
+ L
Sbjct: 1101 VETLF 1105
>gi|258514818|ref|YP_003191040.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
gi|257778523|gb|ACV62417.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
Length = 1172
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 47/310 (15%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I+ A +QAE + KS A SH+IR + GI G E+ +A SE + +++ ++
Sbjct: 415 IEAERAKEQAESANRAKSDFLAVMSHEIRTPMNGILGFAEILLNQA-LSSEQKESVQAIS 473
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+C LL L+N ILD SK+E+GKM L E DF + +++DV+ A KG+E+ ++
Sbjct: 474 LCGEQLLDLINEILDLSKIESGKMVLEETDFSLENIIKDVITTVRQKAQDKGLEIRVNFL 533
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +F GD ++++QILSNLL NAVKFT +G + + ++
Sbjct: 534 DDIPQRFI---GDSIRIRQILSNLLFNAVKFTMQGSVIISVSKRQEE------------- 577
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
+RD + EV DTG GI ++KR+ +F+ + Q
Sbjct: 578 -----------------------CHERD-DIFPLQIEVADTGIGISQDKRELIFDAFTQA 613
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNN 649
+ + GG+GLGL I +SL+ LMGG+I + N +GT F F + + I A ++N
Sbjct: 614 EGVIAQKFGGSGLGLTICRSLLDLMGGEIWV--NSNKPQGTIFTFCLPVKIHFDGAKESN 671
Query: 650 TQGEKELAGG 659
+ ++ G
Sbjct: 672 NFENESVSDG 681
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 20/147 (13%)
Query: 981 EIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRS 1040
+IE + GE + + ILVA+D ++ +++ E L G V ++G L ++S
Sbjct: 932 DIESDGGESGK-----KAYNILVAEDHILNQKIIESFLVTEGHRVTMVKDGAEVLHALKS 986
Query: 1041 GLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGE 1100
+D ILMD +MP M+GYE +IR E+K +PI+A+TA+
Sbjct: 987 N-------------NFDLILMDMQMPTMDGYETMARIRAEKKWGS--MPIVAITAYAMKG 1031
Query: 1101 EADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ +K EAG + +L KP+ + L+ I
Sbjct: 1032 DEEKCFEAGCNYYLSKPIRKADLISLI 1058
>gi|443477473|ref|ZP_21067318.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena
biceps PCC 7429]
gi|443017406|gb|ELS31856.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena
biceps PCC 7429]
Length = 758
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 143/281 (50%), Gaps = 48/281 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE S KS AN SH++R+ L I G ++ E N+ ++
Sbjct: 292 AKDRAEVASKAKSAFIANMSHELRSPLNAIIGFSQVMLRTKNLSPEQYENINIIHRSGEY 351
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N++LD SK+EAGK L +D D+ +LL+D+ D+ H A+ G+E++LD G++
Sbjct: 352 LLTLINNVLDFSKIEAGKNTLNSKDIDLYQLLDDLEDMLHLRAVNAGLELILD-RGGNLP 410
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
++ + D VKL+Q+L NLL NA+KFT +G + +R +SS + QS
Sbjct: 411 RY--IHTDGVKLRQVLLNLLGNAIKFTQQGEVVLR-------------MSSIENSEPQSY 455
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV---KE 595
S F+V DTG GI E+ +FE + Q +E
Sbjct: 456 S---------------------------LNFQVSDTGVGIAPEELDQLFEAFSQTESGRE 488
Query: 596 GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ GTGLGL I + VRLMGGDI V E G +GT F F++
Sbjct: 489 AQEGTGLGLTISRQFVRLMGGDI-TVTSELG-KGTTFNFSI 527
Score = 60.8 bits (146), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KILV DD + R++ L LG V+ NG+ A+ + + PH+ I
Sbjct: 556 KILVVDDKPINRQLLVKLLAPLGFEVKEASNGQEAIVMWEAW--------QPHL-----I 602
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+M+GYEAT+ I+ + N IIALTA + +E + AG D + KP
Sbjct: 603 WMDMRMPVMDGYEATKYIKSTTQGNAT--AIIALTASVLEQEKAIILSAGCDDFMRKPFK 660
Query: 1120 RDHLMEAI 1127
+ A+
Sbjct: 661 EQTIFAAL 668
>gi|445414131|ref|ZP_21433856.1| GHKL domain protein [Acinetobacter sp. WC-743]
gi|444764950|gb|ELW89255.1| GHKL domain protein [Acinetobacter sp. WC-743]
Length = 934
Score = 133 bits (334), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 139/292 (47%), Gaps = 51/292 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A QA + KS+ AN SH++R L I G I L + ++ L+ + +
Sbjct: 278 QARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNDQSLYLQTIRKSSA 337
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K +E+ +D
Sbjct: 338 HLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIEMAFYFADNVP 397
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
V GD ++ KQ+L+NL+SNA+KFT +G I VRA ++ IG
Sbjct: 398 ---KHVIGDALRFKQVLTNLISNAIKFTPDGEIIVRARMEHDD-IG-------------- 439
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
CL + F V D+G G+ RK +FE++ Q V
Sbjct: 440 -QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQGDASV 473
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
GGTGLGL I + LV LM G I D + E+G+ F F L E
Sbjct: 474 TRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAMLTTNE 525
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 10/130 (7%)
Query: 991 QAQKPLRGK--KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
+ K +G+ IL DD + V E L L ++G+ AL +++ +
Sbjct: 655 EQHKDFKGQDLHILAVDDHLPNLIVLEALLGELNVKTTKAQSGQEALTIIQQAVEQ---- 710
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIE 1107
G+ P+D I MD +MP+M+G + TR IR E + + +PIIALTAH +E K ++
Sbjct: 711 GSK---PFDLIFMDIQMPVMSGIDTTRAIRSLESTLDGMRMPIIALTAHALADEKQKLLK 767
Query: 1108 AGMDVHLGKP 1117
GMD ++ KP
Sbjct: 768 VGMDDYVTKP 777
>gi|397690654|ref|YP_006527908.1| multi-sensor hybrid histidine kinase [Melioribacter roseus P3M]
gi|395812146|gb|AFN74895.1| multi-sensor hybrid histidine kinase [Melioribacter roseus P3M]
Length = 749
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 148/305 (48%), Gaps = 60/305 (19%)
Query: 338 KSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYV 397
K+ A R+E IK A Q+A ++S K+ AN SH++R + + G + L
Sbjct: 333 KALEALRQEK------IKSDVAAQKARQESSYKTKFLANMSHEVRTPMNSVMGFLTLIEN 386
Query: 398 EAGPGSE-LETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDL 456
+ E L+ R + A LL ++N+ILD SK+EAGKM+L E +FD+ + + V +
Sbjct: 387 DLFESEEELKKFARDARLAAESLLDIINNILDISKIEAGKMELEENEFDLSDEIHKVSSI 446
Query: 457 FHPVAMRKGVEV--VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRA 514
A +KG+++ +DP K+ GD + +Q++ NL+SNAVK+T EG +++
Sbjct: 447 IGQTARQKGIDIKEQIDPDLP-----DKIYGDATRYRQVVLNLVSNAVKYTDEGSVTISV 501
Query: 515 CVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDT 574
+K R +++E V+DT
Sbjct: 502 EIK-----------------------------------------NRTTSSIEILTSVEDT 520
Query: 575 GKGIPKEKRKTVFENYVQVKEGEG---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTC 631
G GIP +K +FE YVQVK+ + GTGLGL I + V+LMGGDI + K G+
Sbjct: 521 GSGIPNDKIPLLFEPYVQVKDKKSQKEGTGLGLVIAKEFVKLMGGDISVESKPGA--GSK 578
Query: 632 FRFNV 636
F F V
Sbjct: 579 FYFTV 583
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 14/126 (11%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
K++L+ +D+ + + + LR +G V+A +G A+ V++G Y
Sbjct: 625 AKRLLLVEDNPISQDLELKILREVGYLVDAVSSGSDAIDAVKTG-------------RYS 671
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
ILMD EM M+G AT++IR + IPIIA+TAH S ++ +K + AGM+ ++ KP
Sbjct: 672 LILMDIEMSDMDGIAATKQIRNIPG-DMGKIPIIAVTAHSSMKDREKCLAAGMNDYIAKP 730
Query: 1118 LNRDHL 1123
+N L
Sbjct: 731 INIQFL 736
>gi|443314808|ref|ZP_21044338.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
gi|442785576|gb|ELR95386.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
Length = 1070
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 137/270 (50%), Gaps = 33/270 (12%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH++R L I G ++ + E +TNL+ +N LLGL+N +L+
Sbjct: 571 KSEFLANMSHELRTPLNAILGFTQIISRDLSLAQEHQTNLKIINRSGQHLLGLINDVLEM 630
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAG++QL FD+ LL D+ + A K ++++ GS L V+GD K
Sbjct: 631 SKIEAGRVQLNLNSFDLSRLLYDLEAMLGVRAQEKKLKLIF--KYGSELP-RYVEGDEGK 687
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+Q+L NLL NA+KFT+ GH+ +R K + +P+ + ++
Sbjct: 688 LRQVLLNLLGNAIKFTTMGHVILRV---KSVPLQSPTADTDTDTDTDAVP---------- 734
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG---GTGLGLGI 606
+A+ FE++DTG GI E +F+ ++Q K + GTGLGL I
Sbjct: 735 ------------PSAITLEFEIEDTGPGIAAEDLTAIFQPFIQAKSAQNVREGTGLGLVI 782
Query: 607 VQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
Q +RLMGG+I I +G+ F+F +
Sbjct: 783 SQKFIRLMGGEITICSALG--QGSTFKFFI 810
Score = 43.1 bits (100), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 37/156 (23%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D + L LG ++ NG+ +++ PH+ I
Sbjct: 840 RILIVEDQWENSQFLVKLLVPLGFAIKEARNGQEGIRIWAQW--------HPHL-----I 886
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVH----------------IP--IIALTAHISGEE 1101
LMD +M +MNG +AT+ IR E+ Q +P I+ALTA++
Sbjct: 887 LMDMKMSVMNGVDATQAIRTMERGRQFQNRHRDPSQGTLPPYTLVPTKILALTANVFESM 946
Query: 1102 ADKTIEAGMDVHLGKPLNRDHLME------AIKYLH 1131
K +E G D L KP+ L+ ++YL+
Sbjct: 947 QLKAVEIGCDDFLRKPIQGTMLLAKLAEHLGVQYLY 982
>gi|302878534|ref|YP_003847098.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302581323|gb|ADL55334.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 963
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 146/303 (48%), Gaps = 58/303 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A AE ++ KS+ AN SH++R L + G L + E TNL +N
Sbjct: 499 ARNAAETANLAKSVFLANMSHELRTPLNAVLGFSSLLRKDPLLSKEQRTNLNIINRSGEY 558
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +L+ +K+EAG +QL D+G L+ DV D+ A KG+++++D S
Sbjct: 559 LLALINDVLEMAKIEAGWVQLDSAPLDLGMLVRDVTDMMQVRAQEKGLQLLIDQSS---- 614
Query: 479 KFSK-VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+F + ++GD +L+QIL NL+ NAVKFT +G ++VR +K P+ + +
Sbjct: 615 EFPRYIRGDEARLRQILINLVGNAVKFTQQGGVTVRFGLK-------PNTTPA------- 660
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE-- 595
EV+DTG GI E ++ +FE +VQV E
Sbjct: 661 ----------------------------HLLIEVEDTGSGIAAEDQEKIFEPFVQVGEVA 692
Query: 596 GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND-----NNT 650
+ GTGLGL I + V+LMGG + + N + G+ F V L I A D +
Sbjct: 693 MQKGTGLGLTITRQFVQLMGGSVTL----NSKPGSGSLFRVELPINMVRAQDMIEAKSTL 748
Query: 651 QGE 653
QGE
Sbjct: 749 QGE 751
Score = 47.4 bits (111), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 23/132 (17%)
Query: 1000 KILVADDS----MMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+IL+ +D ++LR++ E LG V+ +G AL+L S P
Sbjct: 763 RILIVEDQQENQLLLRQLME----RLGLPVKVASDGVEALELFNSW--------HP---- 806
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D I MD MP+M+G EA R+IR IIA+TA E+ + + AGM+ +
Sbjct: 807 -DLIWMDRRMPVMDGIEAARRIRALPGGEATK--IIAVTASAFMEQRTEMLAAGMNDFVR 863
Query: 1116 KPLNRDHLMEAI 1127
KP + + +A+
Sbjct: 864 KPYRFNEIYDAL 875
>gi|407688248|ref|YP_006803421.1| diguanylate cyclase [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|407291628|gb|AFT95940.1| GGDEF domain protein [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 1373
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 144/294 (48%), Gaps = 60/294 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ-MNVC- 415
+A +QAE + KS AN SH+IR + G+ G++ L S L T Q +N+
Sbjct: 819 KALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLL-----KKSNLTTEQSQRVNIAS 873
Query: 416 --ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
AN LL L+N ILD SK+EA K+++ +FDV EL+E + +A KG++VV+D S
Sbjct: 874 SSANSLLALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKGLDVVVDLS 933
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
S SK+ D +++QIL+NLLSNAVKFT +G +SV A
Sbjct: 934 KVSE---SKINSDPSRIQQILTNLLSNAVKFTEQGELSVTA------------------- 971
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+L N ++N V DTG GIP K +F+ + QV
Sbjct: 972 -----------------ELLPTN----NQNTALMHIAVADTGIGIPASKLPHLFDAFTQV 1010
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
GGTGLGL I + L +L+GGDI + E G RF+V IR A
Sbjct: 1011 DASTTRRYGGTGLGLSITKKLCQLLGGDISVT----TELGKGSRFDVTCEIRYA 1060
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 23/163 (14%)
Query: 972 EGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENG 1031
EG++++ Q+ EE+ + + R IL+ +D+ + + VA L G V+ NG
Sbjct: 1223 EGNTQHVQSP--EENAKYTSDDNAYR---ILLVEDNAINQIVATNVLESEGYVVDVANNG 1277
Query: 1032 EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR-----EEEKRNQV 1086
AL+L++S L A Y I+MDC+MP M+G+EAT+ IR + KR
Sbjct: 1278 VEALELLKSS-----KLKAY----YSAIVMDCQMPEMDGFEATKLIRYGAAGDVYKR--- 1325
Query: 1087 HIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
+PIIA+TA+ + D ++AGMD L KP+ + + +++
Sbjct: 1326 -VPIIAMTANAMQGDKDMCMKAGMDDFLTKPIEHNKVTSTLQH 1367
>gi|428212441|ref|YP_007085585.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428000822|gb|AFY81665.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 992
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 152/310 (49%), Gaps = 56/310 (18%)
Query: 353 LIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIEL-CYVEAGPGSELETNLRQ 411
LI+ EA +A + KS AN SH+IR + G+ G+ L + E P +
Sbjct: 430 LIQTREAALEA---AHAKSQFLANMSHEIRTPMHGVLGIAGLMLHTELTPKQQ--EYAET 484
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
+ + A LLGL+N ILD SK+EAG+M L DF++ E L+DVV+LF P A +G+ + L
Sbjct: 485 IRISAKHLLGLINDILDFSKLEAGEMHLENLDFNLYECLQDVVNLFKPQAEDQGLTLKLQ 544
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
+ ++ +F V+GD +L+QIL NL+SNA+KFT G ISV A L ++
Sbjct: 545 FQE-NLPRF--VRGDPSRLRQILLNLVSNAIKFTPSGSISVEA-----------KLEATT 590
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
H K R F+V DTG GIP E + +F+++
Sbjct: 591 HS-------------KTR-----------------VYFQVTDTGIGIPPEAQAKLFQSFS 620
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
QV GGTGLGL I + LV +M G+I + + N +G+ F F +
Sbjct: 621 QVDPSTSRQYGGTGLGLAICEQLVSMMQGEIGVTSEVN--QGSTFWFTLQFQQALHQETT 678
Query: 648 NNTQGEKELA 657
+ GE+E
Sbjct: 679 GESPGEREFC 688
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 14/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KILV +D ++ + V L LG + NG AL+ + + +D YD +
Sbjct: 706 KILVVEDHLINQTVILSQLEILGYEADCVANGLEALKCLEA-----KD--------YDIV 752
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMDC+MP+M+GY ATR++R E NQ +IALTAH + +K + +GMD +L KP++
Sbjct: 753 LMDCQMPLMDGYTATRELRRREG-NQNRTVVIALTAHAMKADREKCLASGMDDYLSKPVD 811
Query: 1120 RDHLMEAIK 1128
+ L ++
Sbjct: 812 EEDLARIVQ 820
>gi|407684320|ref|YP_006799494.1| diguanylate cyclase [Alteromonas macleodii str. 'English Channel
673']
gi|407245931|gb|AFT75117.1| GGDEF domain protein [Alteromonas macleodii str. 'English Channel
673']
Length = 1373
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 144/294 (48%), Gaps = 60/294 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ-MNVC- 415
+A +QAE + KS AN SH+IR + G+ G++ L S L T Q +N+
Sbjct: 819 KALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLL-----KKSNLTTEQSQRVNIAS 873
Query: 416 --ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
AN LL L+N ILD SK+EA K+++ +FDV EL+E + +A KG++VV+D S
Sbjct: 874 SSANSLLALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKGLDVVVDLS 933
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
S SK+ D +++QIL+NLLSNAVKFT +G +SV A
Sbjct: 934 KVSE---SKINSDPSRIQQILTNLLSNAVKFTEQGELSVTA------------------- 971
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+L N ++N V DTG GIP K +F+ + QV
Sbjct: 972 -----------------ELLPTN----NQNTALMHIAVADTGIGIPASKLPHLFDAFTQV 1010
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
GGTGLGL I + L +L+GGDI + E G RF+V IR A
Sbjct: 1011 DASTTRRYGGTGLGLSITKKLCQLLGGDISVT----TELGKGSRFDVTCEIRYA 1060
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 23/163 (14%)
Query: 972 EGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENG 1031
EG++++ Q+ EE+ + + R IL+ +D+ + + VA L G V+ NG
Sbjct: 1223 EGNTQHVQSP--EENAKSTSDDNAYR---ILLVEDNAINQIVATNVLESEGYVVDVANNG 1277
Query: 1032 EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR-----EEEKRNQV 1086
AL+L++S L A Y I+MDC+MP M+G+EAT+ IR E KR
Sbjct: 1278 VEALELLKSS-----KLKAH----YSAIVMDCQMPEMDGFEATKLIRYGAAGEVYKR--- 1325
Query: 1087 HIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
+PIIA+TA+ + D ++AGMD L KP+ + + +++
Sbjct: 1326 -VPIIAMTANAMQGDKDMCMKAGMDDFLTKPIEHNKVTSTLQH 1367
>gi|153870045|ref|ZP_01999526.1| two-component system sensor histidine kinase/response regulator
[Beggiatoa sp. PS]
gi|152073490|gb|EDN70475.1| two-component system sensor histidine kinase/response regulator
[Beggiatoa sp. PS]
Length = 1258
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 160/314 (50%), Gaps = 32/314 (10%)
Query: 338 KSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYV 397
K+ + L S + A ++AE + KS A+ SH++R L I G ++ +
Sbjct: 742 KTEELMQSHQELAQSYQQLETAKEKAEVANRAKSTFLASMSHELRTPLNAILGFAQIMHR 801
Query: 398 EAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLF 457
+ +E NL +N N LL L+N +LD SK+EAGK+ L E++FD+ LL+++ DLF
Sbjct: 802 SSTLPTEHRDNLNIINRSGNYLLSLINDVLDMSKIEAGKITLDEQNFDLYRLLDEIYDLF 861
Query: 458 HPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVK 517
+ A K +++ ++ SD + ++ ++ D KL+Q++ NL+SNA+KFT +G +S+ A
Sbjct: 862 YLKAESKQLQLQVERSD-HLPRY--IRTDGKKLRQVIINLISNALKFTQDGGVSLYADKI 918
Query: 518 KPSAIGNPSLSSSRHGFLQSISCLFYKNKKARG----DLEAVNAAQRDENAMEFTFEVDD 573
+ G S R + RG D E VN F V D
Sbjct: 919 ASNTSGEVPPPSGR---------------RLRGGKNPDGEDVNTE-----ITTLHFSVAD 958
Query: 574 TGKGIPKEKRKTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGT 630
TG G+ +E+ +FE + Q G + G+GLGL I + +LMGG+I+ V E G +GT
Sbjct: 959 TGAGVAQEEMDKLFEAFSQTATGRASQEGSGLGLPISRQFTQLMGGNIQ-VRSEVG-KGT 1016
Query: 631 CFRFNVFLAIREAS 644
F + I EA+
Sbjct: 1017 VFEVTIRAQIVEAA 1030
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ DD R++ L G + NG+ A+ + PH+ I
Sbjct: 1052 RLLIVDDKWENRQLLIQLLNPFGFELREATNGQEAIDIFEHW--------QPHL-----I 1098
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD MPIM+G +AT++I+ + + V IIALTA + EE + + G D L KP
Sbjct: 1099 WMDIRMPIMDGLQATQQIKAKPQGQSV--AIIALTASVLEEERENILAVGCDDFLHKPF 1155
>gi|406597307|ref|YP_006748437.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126]
gi|406374628|gb|AFS37883.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
Length = 1373
Score = 132 bits (333), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 144/294 (48%), Gaps = 60/294 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ-MNVC- 415
+A +QAE + KS AN SH+IR + G+ G++ L S L T Q +N+
Sbjct: 819 KALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLL-----KKSNLTTEQSQRVNIAS 873
Query: 416 --ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
AN LL L+N ILD SK+EA K+++ +FDV EL+E + +A KG++VV+D S
Sbjct: 874 SSANSLLALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKGLDVVVDLS 933
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
S SK+ D +++QIL+NLLSNAVKFT +G +SV A
Sbjct: 934 KVSE---SKINSDPSRIQQILTNLLSNAVKFTEQGELSVTA------------------- 971
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+L N ++N V DTG GIP K +F+ + QV
Sbjct: 972 -----------------ELLPTN----NQNTALMHIAVADTGIGIPASKLPHLFDAFTQV 1010
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
GGTGLGL I + L +L+GGDI + E G RF+V IR A
Sbjct: 1011 DASTTRRYGGTGLGLSITKKLCQLLGGDISVT----TELGKGSRFDVTCEIRYA 1060
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 23/163 (14%)
Query: 972 EGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENG 1031
EG++++ Q+ EE+ + + R IL+ +D+ + + VA L G V+ NG
Sbjct: 1223 EGNTQHVQSP--EENAKYTSDDNAYR---ILLVEDNAINQIVATNVLESEGYVVDVANNG 1277
Query: 1032 EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR-----EEEKRNQV 1086
AL+L++S L A Y I+MDC+MP M+G+EAT+ IR E KR
Sbjct: 1278 VEALELLKSS-----KLKAH----YSAIVMDCQMPEMDGFEATKLIRYGAAGEVYKR--- 1325
Query: 1087 HIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
+PIIA+TA+ + D ++AGMD L KP+ + + +++
Sbjct: 1326 -VPIIAMTANAMQGDKDMCMKAGMDDFLTKPIEHNKVTSTLQH 1367
>gi|348028909|ref|YP_004871595.1| multi-sensor hybrid histidine kinase [Glaciecola nitratireducens
FR1064]
gi|347946252|gb|AEP29602.1| multi-sensor hybrid histidine kinase [Glaciecola nitratireducens
FR1064]
Length = 987
Score = 132 bits (333), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 141/284 (49%), Gaps = 54/284 (19%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL-ETNLRQMNVCA 416
+A +QAE S KS +N SH++R L GI G +EL E ++L NL +++
Sbjct: 467 KAKKQAEATSHTKSSFISNVSHEMRTPLNGILGTLELIRAEGLNDNQLGYMNLTDISIT- 525
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+L L+N ILD SK+EAGK++ E+ D+ LED V LF P+ KGV++ LD +
Sbjct: 526 -NLSNLINDILDLSKIEAGKLEFRHENIDLLATLEDTVALFQPLTAAKGVKLHLDTAGLD 584
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+L + GD ++KQ+L+NLLSNAVKFT++G I V V + +G
Sbjct: 585 ILNYY---GDGHRVKQVLNNLLSNAVKFTAKGSIVV---VARSQIVG------------- 625
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY----VQ 592
+ F V DTG GI K K + +F + V
Sbjct: 626 --------------------------KRISFGCSVIDTGVGIAKVKHEQIFVAFDQGGVN 659
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ GGTGLGL I + L +LM G I +++ +GTCF F +
Sbjct: 660 TAQTYGGTGLGLSITKQLCKLMDGKIWFTSEQS--KGTCFSFEI 701
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+ADD+ + + L TV +NG+ + + + L D +L
Sbjct: 858 ILIADDNEINLAILRGMLEDTPFTVFTTKNGQEVIDFLNKTNKSE--------LKVDLLL 909
Query: 1061 MDCEMPIMNGYEATRKIRE---EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+DC MPIM+G+E IR+ E+ +H +IA TA + +K + AGMD ++ KP
Sbjct: 910 LDCNMPIMDGFECVHLIRDGQAGEENKALH--VIAATADAMLGDREKCLAAGMDDYIAKP 967
Query: 1118 LNRDHLMEAI 1127
+++ L I
Sbjct: 968 ISKKVLFAHI 977
>gi|381158343|ref|ZP_09867576.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380879701|gb|EIC21792.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 938
Score = 132 bits (333), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 147/292 (50%), Gaps = 55/292 (18%)
Query: 374 FANASHDIRAALAGITGLIELCYVE-AGPGSELETNLRQMNVCANDLLGLLNSILDTSKV 432
A+ SH+IR + GI GL EL + P + L Q++ +LLG+LN ILD SK+
Sbjct: 326 LAHMSHEIRTPMNGIIGLSELALQQTVNPITR--RYLEQLHHSGINLLGILNDILDQSKI 383
Query: 433 EAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQ 492
+AG++ L E FD LLE LF P+A KG+E+ ++ +D V ++ + GD ++L+Q
Sbjct: 384 DAGQLSLEETPFDRDRLLESERSLFAPIATGKGLELAIE-ADPKVPRW--LVGDELRLRQ 440
Query: 493 ILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDL 552
+LSNLLSNA+KFT G I+++ I+C +
Sbjct: 441 VLSNLLSNAIKFTETGRITLQ------------------------IAC-----------I 465
Query: 553 EAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQ 608
E A R + V DTG G+ +E R +F+ + Q + GGTGLGL I +
Sbjct: 466 ECTEAVTR------LRWTVTDTGIGMDRETRARLFQPFTQGDDSIARRFGGTGLGLSISR 519
Query: 609 SLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA--SANDNNTQGEKELAG 658
L+ +MGG +E+ G G+ F F V L I EA +A + +L+G
Sbjct: 520 RLIEMMGGQLEVESALEG--GSRFSFEVRLKIAEAPSAAAQTDVSARVDLSG 569
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 968 NSSGEGSSRYK---QTEIEEEDGERSQ----AQKPLRGKKILVADDSMMLRRVAEINLRH 1020
S+ EG SR+ + +I E +Q A+ L G ++LVA+D + ++V L
Sbjct: 532 ESALEGGSRFSFEVRLKIAEAPSAAAQTDVSARVDLSGVRVLVAEDQPINQQVIRGMLAL 591
Query: 1021 LGATVEACENGEAAL-QLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079
LG +G+ AL QL S P D +LMD +MP M+G ATR++R
Sbjct: 592 LGTEAIIVGDGQQALEQLAASA-------------PPDLVLMDIQMPRMDGLTATRQLRA 638
Query: 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHL 1123
+ +P+IALTA ++ E +K AGM L KP+ D L
Sbjct: 639 NPAWRE--LPVIALTAGVTAAEREKITTAGMSDLLPKPVTLDTL 680
>gi|225419699|ref|ZP_03762002.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme
DSM 15981]
gi|225041663|gb|EEG51909.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme
DSM 15981]
Length = 926
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 156/303 (51%), Gaps = 57/303 (18%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
I++ LI +++ + S R+ + A L ++EA AE KS KS+ + SH+I
Sbjct: 516 ILILSCALIFIMSVILMSVRSRMRN----ALLQSRLEA---AEAKSTAKSVFLSQMSHEI 568
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE 441
R + I GL +L E E+E L+++ + LL L+N ILD S++E GKM++ +
Sbjct: 569 RTPMNAIIGLTDLTCKERDVPPEIEKKLKKIRSSSQYLLALINDILDMSRIENGKMEIEQ 628
Query: 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNA 501
+DF + +L+++ + A +KG+E +D + + GD V+L+Q+L NLLSNA
Sbjct: 629 KDFSLSLVLQELQSMMSTQAEQKGLEFQVD----FYVSHDWLAGDPVRLRQVLINLLSNA 684
Query: 502 VKFT-SEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQR 560
VKFT + G +++R N+++ G+
Sbjct: 685 VKFTPAGGKVTLRV------------------------------NEQSCGE--------- 705
Query: 561 DENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGD 617
ME+ F V DTG GIP E ++ +F ++ Q++ GTGLGL I +++ RLMGGD
Sbjct: 706 ---EMEYRFSVQDTGVGIPYEDQERIFSSFEQLRPSISHSAGTGLGLPISRNIARLMGGD 762
Query: 618 IEI 620
+E+
Sbjct: 763 LEV 765
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G K+L+A+D+ + +A+ L G V NG+ A+ D+ G P
Sbjct: 800 LEGMKVLLAEDNDLNAEIAQELLAMAGVAVCRAANGQEAV--------DRFCAGPPG--E 849
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+ +LMD MP+ NG+EA R+IR R ++PIIA+ A+ E+ ++ +GM+ +
Sbjct: 850 FQAVLMDIRMPVKNGHEAAREIR-ASGRPDANVPIIAMIANTFKEDEEEARASGMNGFVP 908
Query: 1116 KPLNRDHLMEAIK 1128
KP++ D L A++
Sbjct: 909 KPIDPDRLFTALR 921
>gi|386829552|ref|ZP_10116659.1| PAS domain S-box [Beggiatoa alba B18LD]
gi|386430436|gb|EIJ44264.1| PAS domain S-box [Beggiatoa alba B18LD]
Length = 1259
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 135/282 (47%), Gaps = 49/282 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A QAE + KS AN SH++R + I G +L +A L+ NL +N
Sbjct: 790 QAKNQAEAANRAKSAFLANMSHELRTPMNAILGFSQLMQRDAHITPSLQENLEIINRSGE 849
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +L SK+EAG+M L E++FD+ LL + DLFH A K + ++ D
Sbjct: 850 HLLALINDVLAMSKIEAGRMMLNEQNFDLYHLLNGLHDLFHLQATNKNLNLIFQRPDTLP 909
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
V+ D KL+Q+L NLL NA+KFT+ G+IS+ KP A
Sbjct: 910 ---HYVRTDENKLRQVLINLLGNAIKFTNTGNISLIITHTKPEA---------------- 950
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+ + F+V DTG GI + + +F+ + Q G+
Sbjct: 951 -------------------------DKVRLFFKVKDTGLGIAQHELSQLFKAFGQTTTGQ 985
Query: 598 G---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GTGLGL I Q VRLMGG+I V+ G+ GT F F++
Sbjct: 986 QAQEGTGLGLRISQEFVRLMGGEI-TVESWVGQ-GTTFSFDI 1025
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV +D R + L LG V+ NG+ A+ + PH+ I
Sbjct: 1055 RLLVVEDRWENRELISRLLEPLGFAVQKAANGQEAVAIWAKW--------QPHL-----I 1101
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+M+G ATR I+ + ++ IIALTA EE +EAG D + KP
Sbjct: 1102 WMDIRMPVMDGVAATRSIKARKTGHRT--VIIALTAGAFEEERAAMLEAGCDDFVTKPFK 1159
Query: 1120 RDHLMEAI-KYL 1130
+ + E + +YL
Sbjct: 1160 EEVIFEKLAQYL 1171
>gi|220925264|ref|YP_002500566.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
gi|219949871|gb|ACL60263.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
Length = 713
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 136/291 (46%), Gaps = 64/291 (21%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +AE S+ KS A SH+ R L GI G+ +L ++ E ET +R +
Sbjct: 191 EARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLV-LDTPLSPEQETYIRAVKTSGE 249
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L++ ILD SK+EAG++ L E FD L+E VV+L P A KG+E+ D ++
Sbjct: 250 ALLSLIDGILDFSKIEAGRLDLAAEPFDPAGLVESVVELLAPRAQDKGLEIAADLAEDLP 309
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L +V GD +++QIL NL NAVKFT G + V A
Sbjct: 310 L---QVVGDSDRVRQILLNLAGNAVKFTESGGVGVTA----------------------- 343
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+ E V DTG GIP+E+ +FE + Q G+
Sbjct: 344 -----------------------ERAGAEIALTVRDTGPGIPEERLPLLFEEFEQ---GD 377
Query: 598 G-------GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR 641
G GTGLGL I + LV MGG IE+ + + G+CFR V L +R
Sbjct: 378 GSASRRHEGTGLGLAITRRLVDRMGGRIEVTSRPD--EGSCFR--VVLPLR 424
Score = 41.6 bits (96), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP---IIALTAHISGEEADKTIEAGMDV 1112
+D L+D MP ++G EA R++R E+ IP +IA+TA++ E+ AG D
Sbjct: 634 FDLALLDIRMPRLDGLEAARRLRAFERAR--GIPPQHLIAVTANVGAEDEAAARAAGFDG 691
Query: 1113 HLGKPLN 1119
L KPL+
Sbjct: 692 FLSKPLD 698
>gi|424056899|ref|ZP_17794416.1| hypothetical protein W9I_00225 [Acinetobacter nosocomialis Ab22222]
gi|407440432|gb|EKF46949.1| hypothetical protein W9I_00225 [Acinetobacter nosocomialis Ab22222]
Length = 935
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTHQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|428771474|ref|YP_007163264.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
aponinum PCC 10605]
gi|428685753|gb|AFZ55220.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
aponinum PCC 10605]
Length = 932
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 144/286 (50%), Gaps = 46/286 (16%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA Q+AE + KS+ AN SH++R + I G ++ E N+ + N
Sbjct: 459 EAKQKAEIANKTKSIFLANMSHELRTPMNAILGFSQIMMRSQTLSPEQLENISIIQRSGN 518
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N++LD SK+EAGKM L E++FD+ LLE++ DL A KG+++ L+ D V
Sbjct: 519 YLLNLINNVLDLSKIEAGKMTLNEKNFDLHALLEEIEDLLQLKAEDKGLQLNLEI-DTYV 577
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+F V D KL+Q+L NL++N +KFT EG +++ L S
Sbjct: 578 PRF--VCTDETKLRQVLINLVNNGIKFTEEGGVNI----------------------LVS 613
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG- 596
+S N EN F V+DTG GI +E VFE + Q + G
Sbjct: 614 LS----------------NQTLEMENQRYIKFAVEDTGAGIAQEDLSKVFEAFTQTEVGR 657
Query: 597 --EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
+ GTGLGL I + V+LMGGDIEI GE G+ F F + + +
Sbjct: 658 NVQEGTGLGLPISRRFVQLMGGDIEI-QSTLGE-GSIFSFEIVVTL 701
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 17/129 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+ILV DD + R + L+ LG + EAC NG+ A+ + ++ D PH+
Sbjct: 729 RILVVDDRPINRLLLIKLLQPLGFELKEAC-NGQEAI-----AIWEEWD---PHL----- 774
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
I MD MP+M+GYEAT+ I+ K N IIALTA + EE + AG D + KP
Sbjct: 775 IWMDMRMPVMDGYEATQYIKGTLKGNAT--AIIALTASVLEEEKAVILSAGCDDFIRKPF 832
Query: 1119 NRDHLMEAI 1127
+ +AI
Sbjct: 833 RESVIFDAI 841
>gi|411117040|ref|ZP_11389527.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
gi|410713143|gb|EKQ70644.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
Length = 1270
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 138/282 (48%), Gaps = 57/282 (20%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A QQAER S KS A SH+IR + G+ G+ L ++ +E + +
Sbjct: 578 ARQQAERASQMKSTFLATMSHEIRTPMNGVLGMTSL-LLDTQLNAEQRDFVETIRCSGET 636
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N ILD SK+EAG+M+L +FD+ +E+V DL A KG+E+ + L
Sbjct: 637 LLTLINQILDFSKLEAGEMELETLEFDLNTCIEEVADLVAATAHAKGLEL-------ATL 689
Query: 479 KF----SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
+ +++KGD +L+Q+L+NL+SNAVKFT++G + ++A +K
Sbjct: 690 VYRNLPTRLKGDVSRLRQVLTNLVSNAVKFTAQGEVVIQAALK----------------- 732
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
A+ D A F V DTG GIP E ++ +F+ + QV
Sbjct: 733 -----------------------AETDTTAT-IMFSVTDTGIGIPLEAQRKLFKPFSQVD 768
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GGTGLGL I + LV LMGG+I + E E F
Sbjct: 769 ASTTRRYGGTGLGLAISKQLVELMGGEIGVDSTEGKEARFWF 810
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 79/130 (60%), Gaps = 14/130 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+L+ +D+++ ++V L++LG + NG+ ALQ++ +PYD I
Sbjct: 1008 KLLLVEDNVINQKVTLNQLKNLGYKADVAANGKEALQMLEQ-------------IPYDLI 1054
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMDC+MP+++GY T++IR E ++ H ++ALTA+ E+ + I+AGMD +L KP+
Sbjct: 1055 LMDCQMPVLDGYSTTQEIRRIEGTDR-HTIVVALTANALREDRARCIQAGMDDYLSKPIL 1113
Query: 1120 RDHLMEAIKY 1129
+D L ++Y
Sbjct: 1114 KDKLAAKLRY 1123
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K LV DD R+V + G V+ N AL+++R DQ G PY
Sbjct: 837 KALVVDDHTTNRKVLCHQISAWGMRVDEAANARTALKMLR----DQAIAGT----PYHVA 888
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
++D +MP M+G I+ ++ + ++ H G A ++ G +L KP+
Sbjct: 889 ILDMQMPEMDGEMLGACIKSDQLLQTTRLIMMTSLNHWGG--ARNALQLGFSAYLVKPVK 946
Query: 1120 RDHLMEAI 1127
+ L++ I
Sbjct: 947 QSRLLDCI 954
>gi|410665695|ref|YP_006918066.1| putative hybrid histidine kinase [Simiduia agarivorans SA1 = DSM
21679]
gi|409028052|gb|AFV00337.1| putative hybrid histidine kinase [Simiduia agarivorans SA1 = DSM
21679]
Length = 1261
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 156/297 (52%), Gaps = 54/297 (18%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM-N 413
K A ++A++ + KS AN SH+IR + G+ G++ L + P SE + + ++ +
Sbjct: 627 KAQRAAERADKANKAKSAFLANMSHEIRTPMNGVLGMLNLLGRQ--PLSEAQAHYHELAS 684
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
A LL ++N ILD SK++AGK+ L DFD+ +L+ DVV+ A KG+ +VLD S
Sbjct: 685 SSARALLSIINDILDFSKIDAGKLALEVMDFDLPDLISDVVESQAQRAEEKGIGLVLDMS 744
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ SV V+GD +L+QIL+NLLSNA+KFT +G +++ + +L+SS G
Sbjct: 745 EVSV---DFVRGDPGRLRQILTNLLSNAIKFTDQGGVTL-----------HFALASSESG 790
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
S +C V DTG GI E + +F + Q
Sbjct: 791 LRLS-AC------------------------------VKDTGIGIEPEVQLRLFSAFSQA 819
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
E GGTGLGL I + LV LMGG I ++D + G +G+ F F V L + ++ AN
Sbjct: 820 DESTTRRFGGTGLGLVISKQLVELMGGTI-VLDSKPG-KGSAFSFTVQLELPQSDAN 874
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 1018 LRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077
L LG V NGE AL +R+ HI + +LMDC MP+M+GYEATR +
Sbjct: 1022 LDDLGCEVTVANNGEQALAALRTA--------GRHI---ELVLMDCRMPVMDGYEATRVL 1070
Query: 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHL 1123
R + +P++ALTA+ + + AGM+ HL KP++ + L
Sbjct: 1071 RSWGGYYE-QLPVVALTANALAGDKATCLAAGMNDHLAKPIHPELL 1115
>gi|260551959|ref|ZP_05825821.1| sensor protein gacS [Acinetobacter sp. RUH2624]
gi|260405362|gb|EEW98857.1| sensor protein gacS [Acinetobacter sp. RUH2624]
Length = 935
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|425741583|ref|ZP_18859728.1| GHKL domain protein [Acinetobacter baumannii WC-487]
gi|425492148|gb|EKU58418.1| GHKL domain protein [Acinetobacter baumannii WC-487]
Length = 935
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
Length = 1069
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 146/289 (50%), Gaps = 47/289 (16%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +QAE S KS AN SH+IR + G+ G+ EL ++ E R +
Sbjct: 317 EAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAEL-LLDTPLTPEQREYARTIRSSGE 375
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDG 475
LL +LN ILD SK+EAG++ L F++ + +E+VV L P A KG+E++ ++P
Sbjct: 376 ALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVP 435
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ +KGD +L+Q+L+NL+ NA+KFT EG + V + K
Sbjct: 436 PL-----IKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSVSLSK----------------- 473
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+ ++ A +R +E FEV D+G GI +E++K +FE + Q
Sbjct: 474 ---------------EEKSAPAGERG-GEIELRFEVKDSGIGIQEEQQKHLFEAFSQADA 517
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I + LV +MGG+I + K + + G+ F F+ +
Sbjct: 518 STTRRYGGTGLGLAISRQLVEMMGGEIGL--KSSPKEGSTFHFSARFVL 564
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 83/137 (60%), Gaps = 9/137 (6%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV------RSGLNDQRDLGAPHIL 1054
IL+A+D+ + ++VA L+ LG VE +NGE AL+ + + + + G
Sbjct: 767 ILLAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGSPKK 826
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP---IIALTAHISGEEADKTIEAGMD 1111
Y +LMD +MP M+G EATR+IR +E+ + +P IIA++AH E+ ++ ++AGMD
Sbjct: 827 KYAAVLMDIQMPKMDGLEATRRIRSKEEEGVLRLPRTPIIAMSAHAMQEDRERALKAGMD 886
Query: 1112 VHLGKPLNRDHLMEAIK 1128
++ KP+ ++ L EA++
Sbjct: 887 HYISKPVKKEQLKEALE 903
>gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
P7]
gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
P7]
Length = 945
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 155/307 (50%), Gaps = 66/307 (21%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R A KE++ +A +QAE + KS AN SH+IR + GI G +EL
Sbjct: 303 RLAEKELY---------KAKEQAEAANTAKSRFLANMSHEIRTPMNGIFGFLELLQA-TN 352
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
E + +R+ + LL ++N ILD SK+EA K+ + + F++ +ED V L P
Sbjct: 353 LSLEQKEFIREAKSASEILLHIINDILDFSKIEAKKLTMEKIKFNLRNSIEDAVSLLAPK 412
Query: 461 AMRKGVEV--VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK 518
A K +E+ +++P+ +V GD +L+Q+L+NL+SNAVKFTS+G ISV+
Sbjct: 413 AAEKNLELYTMINPNVPE-----EVIGDPSRLRQVLNNLISNAVKFTSKGEISVK----- 462
Query: 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEF-TFEVDDTGKG 577
+ CL ++EN + F FEV DTG G
Sbjct: 463 -------------------VDCL------------------KEENKIAFLNFEVKDTGIG 485
Query: 578 IPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFR 633
I KE T+F+++ Q GGTGLGL I LV++MGG I+ V+ GE G+ F+
Sbjct: 486 IRKEHINTIFKSFSQADASTTRKYGGTGLGLAISSELVKMMGGKIQ-VESIVGE-GSTFK 543
Query: 634 FNVFLAI 640
F+V L I
Sbjct: 544 FDVKLKI 550
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 20/132 (15%)
Query: 1000 KILVADDSMMLRRVAEINLRHL-GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
KIL+ +D++M R++ IN+ L T + NG AL+ V ++D YD
Sbjct: 717 KILLVEDNVMNRKIV-INILKLHDMTCDVAVNGSEALKAVS-----EKD--------YDV 762
Query: 1059 ILMDCEMPIMNGYEATRKIR--EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
+ MDC+MP+M+GYE T KIR E +K+ H IIA+TA+ +++K IEAGMD ++ K
Sbjct: 763 VFMDCQMPVMDGYECTAKIRILEGDKK---HTTIIAMTANAMEGDSEKCIEAGMDAYISK 819
Query: 1117 PLNRDHLMEAIK 1128
P+N D + + I+
Sbjct: 820 PINFDTMFKMIE 831
Score = 45.1 bits (105), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LRG +LV DD+ R++ L+ G V +N AA+ + S N + +
Sbjct: 564 LRGMNVLVVDDNDNNRKIVVSYLQETGLMVFEAKNAAAAITTIISKANTKNKINTA---- 619
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
++D +M M+ YE ++ V + ++A + + G E + E G +LG
Sbjct: 620 ----IIDYQMTDMSAYELATTLKTMPFAKDVKLILLA-SVNQKG-ETKSSKEYGFSCYLG 673
Query: 1116 KPLNRDHLMEAI 1127
KP+ RD L+ I
Sbjct: 674 KPVKRDDLLNCI 685
>gi|445439648|ref|ZP_21441773.1| GHKL domain protein [Acinetobacter baumannii OIFC021]
gi|444751880|gb|ELW76578.1| GHKL domain protein [Acinetobacter baumannii OIFC021]
Length = 935
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|336126086|ref|YP_004578042.1| sensory transduction protein kinase [Vibrio anguillarum 775]
gi|335343803|gb|AEH35085.1| Sensory transduction protein kinase [Vibrio anguillarum 775]
Length = 888
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 150/304 (49%), Gaps = 60/304 (19%)
Query: 345 KEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE 404
K+ ++L++ EA A R KS AN SH+IR L GI G+ E+ G+E
Sbjct: 372 KQQQYESALVETKEAAIAANRA---KSAFLANMSHEIRTPLNGIIGMTEILSRSEFTGNE 428
Query: 405 LETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK 464
E L ++ + LL L+N ILD SK+E+G ++L F++ EL+ D V+L + A+ +
Sbjct: 429 REI-LADIDTSSQALLILINDILDLSKIESGNLELAPHRFELAELVYDTVNLVNAKALSQ 487
Query: 465 GVE--VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI 522
+E + LDP ++ +F + D +LKQ+L NLLSNAVKFT +G+++ ++
Sbjct: 488 HIELNIYLDP---ALPRF--IIADEYRLKQVLMNLLSNAVKFTKDGYVNTGLTLET---- 538
Query: 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK 582
GD+ ++ F V DTG GI KE
Sbjct: 539 ---------------------------GDITSIR------------FAVSDTGSGIDKEM 559
Query: 583 RKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
T+F+ ++Q + GGTGLGL I + LV LM GDI + + G+CF F V +
Sbjct: 560 LNTIFDPFIQEDSSITRRFGGTGLGLAICRQLVDLMQGDIHV--QSTKGLGSCFEFVVPI 617
Query: 639 AIRE 642
+ E
Sbjct: 618 EVAE 621
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K+IL+ +D++M +++A L G NG+ A+ + G + +
Sbjct: 763 KRILIVEDNLMNQKIASFFLEKAGIGYVVANNGQEAVDAITQGGH------------FAA 810
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+LMDC MP+M+G AT+KIRE EK V +PIIALTA + E+ +AGMD +L KP
Sbjct: 811 VLMDCMMPVMDGLTATKKIREWEKEQGVEKLPIIALTASVLEEDIKSCFDAGMDAYLPKP 870
Query: 1118 LNRDHLME 1125
L +
Sbjct: 871 YKSKQLFD 878
>gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
12809]
gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
12809]
Length = 1005
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/311 (33%), Positives = 151/311 (48%), Gaps = 57/311 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A AE+ S KS AN SH+IR L GI GL +L ++ ++ + +R+++ A
Sbjct: 261 KARDAAEQASKAKSSFLANMSHEIRTPLNGIIGLTKLM-LDLELSNKQKDYMRKIDRSAK 319
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDG 475
LLG+LN +LD SK+EAGK+++ DF + + + DLF KG+E+ +DP
Sbjct: 320 ALLGILNDVLDLSKIEAGKLRIDNHDFVFESVFKSIDDLFTIKIEEKGLELFFEIDPEIP 379
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
L GD +++KQ+L NL+SNAVKFT EG I ++A V + +
Sbjct: 380 QHL-----TGDPLRIKQVLINLVSNAVKFTDEGEIHIKAEVTEITD-------------- 420
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
IS L F V DTG GIP + + +F + QV E
Sbjct: 421 SDISIL---------------------------FSVRDTGVGIPANELEKIFTAFTQVDE 453
Query: 596 GEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI--REASANDNN 649
GTGLGL I ++LV +MGG + + + + G+ F F + L I S+N NN
Sbjct: 454 TSTRRYEGTGLGLAITKNLVSMMGGTVTV--ESDINMGSIFSFKLTLQIPVNAVSSNPNN 511
Query: 650 TQGEKELAGGD 660
G K L D
Sbjct: 512 LYGMKTLVVDD 522
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 16/135 (11%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
GK +L+ +D+ + R VA+ L+ G TVE NG+ A++ V+S YD
Sbjct: 666 GKSVLLVEDNSVNRLVAQETLQKFGLTVEVALNGKDAVEKVKSK-------------KYD 712
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+LMD MP+M+GY AT +IR+ + Q +PIIALTA +K GM+ HL KP
Sbjct: 713 AVLMDIHMPVMDGYRATAEIRQIFDKKQ--LPIIALTADALDTHKEKCFAVGMNDHLSKP 770
Query: 1118 LNRDHLMEAI-KYLH 1131
+N + L + + K+L
Sbjct: 771 INIEILFKVLCKWLQ 785
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G K LV DD R + L V ++GE+AL+L ++ + + G+P
Sbjct: 512 LYGMKTLVVDDKETSREILRKILESWSFEVYTAKDGESALKLAQA----EHEKGSP---- 563
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA--GMDVH 1113
+ +L+D +MP M+G+E KIRE + + +H II + +E + + +
Sbjct: 564 FHLVLVDWKMPGMDGFETAEKIREFSRDSGIHDKIIMIMVTAYEKELTEKMSGNDNFNFV 623
Query: 1114 LGKPLNRDHLMEAI 1127
L KP+ L ++I
Sbjct: 624 LSKPVTPSILFDSI 637
>gi|398335499|ref|ZP_10520204.1| histidine kinase response regulator hybrid protein [Leptospira
kmetyi serovar Malaysia str. Bejo-Iso9]
Length = 830
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 148/293 (50%), Gaps = 53/293 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + ++ ++ A
Sbjct: 432 IQAKEVAEKASQVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNEEQKEYIKILSGSA 490
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L +E F + +L+++ DL +P+A RK ++ L +G
Sbjct: 491 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKRKQIDFKL---EGK 547
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD+++L+QIL NL N +KFT+ G + ++ KK S
Sbjct: 548 FDIQEYVYGDQLRLRQILWNLSGNGIKFTNRGEVVLKVSQKKIS---------------- 591
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAM-EFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
DEN + EFT V DTG GIP EK+K VF+ + Q
Sbjct: 592 ------------------------DENILIEFT--VSDTGIGIPPEKQKQVFDAFSQSDT 625
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GG+GLGL I + LV L GG + + KE +G+ F F++ I AS
Sbjct: 626 STARKFGGSGLGLSITKQLVELQGGVLSLESKEG--KGSRFSFSIAYEIPSAS 676
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILVA+D+ + E L+ LG NG ++ R L+ +D +
Sbjct: 703 RILVAEDNETNCLLIERALKKLGYDPVVVHNGSEVIE--RMQLD-----------TFDIV 749
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD MP ++G EAT+ IR +++ ++ I IIALTA +K + GM+ L KPL+
Sbjct: 750 LMDIHMPEVDGIEATKWIRSQKQNEELPI-IIALTADAIESSKEKYVSKGMNDCLIKPLD 808
Query: 1120 RDHLMEAIKY 1129
L + Y
Sbjct: 809 LAILKNTLDY 818
>gi|184156899|ref|YP_001845238.1| Signal transduction histidine kinase [Acinetobacter baumannii
ACICU]
gi|183208493|gb|ACC55891.1| Signal transduction histidine kinase [Acinetobacter baumannii
ACICU]
Length = 906
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 245 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 304
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 305 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 364
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 365 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 410
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 411 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 440
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 441 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 496
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 632 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 684
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 685 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 744
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 745 TKPIQMEQIIQIL 757
>gi|169634358|ref|YP_001708094.1| GacS-like sensor kinase protein [Acinetobacter baumannii SDF]
gi|169153150|emb|CAP02235.1| GacS-like sensor kinase protein [Acinetobacter baumannii]
Length = 935
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|421789462|ref|ZP_16225720.1| GHKL domain protein [Acinetobacter baumannii Naval-82]
gi|410398593|gb|EKP50804.1| GHKL domain protein [Acinetobacter baumannii Naval-82]
Length = 935
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|334340222|ref|YP_004545202.1| PAS sensor protein [Desulfotomaculum ruminis DSM 2154]
gi|334091576|gb|AEG59916.1| PAS sensor protein [Desulfotomaculum ruminis DSM 2154]
Length = 1276
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 142/289 (49%), Gaps = 51/289 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + AE+ S KS AN SH+IR + GI G E+ + G E + +++ + C
Sbjct: 531 QAREIAEKASQAKSEFLANMSHEIRTPMNGILGFAEVL-AQQGLNQEQQESVKIIRQCGE 589
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE--VVLDPSDG 475
L+ L+N ILD SK+E+GK+ L E F + +++ + V++ P+ M K VE + +DP
Sbjct: 590 QLMDLINDILDLSKIESGKLILEETVFSLRKMIYETVNVIEPILMEKNVEMKISIDPHLP 649
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
L KGD +++QIL+NLLSNA KFT EG + V+ G +L + H
Sbjct: 650 DYL-----KGDSFRIRQILNNLLSNAAKFTHEGCVEVKVQ-------GERTLEKTDH--- 694
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
TF V DTG GIP +K +FE + Q
Sbjct: 695 ---------------------------RNFVLTFIVSDTGIGIPSDKLAEIFETFTQADG 727
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I +SL LMGG +++ + ++G+ F + +A+
Sbjct: 728 STTRKYGGTGLGLTISRSLTELMGGQLQV--QSEFKKGSQFSLTLPVAL 774
Score = 86.7 bits (213), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 15/128 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ +++ E L G V ENG+ AL + G YD +L
Sbjct: 1055 VLLVEDNSFNQKLIEHLLTGDGYKVTMVENGQEALAALDQG-------------EYDIVL 1101
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP+M+GYEATR+IR EK + +P+IALTAH + +K + AG D +L KP+N+
Sbjct: 1102 MDMQMPVMDGYEATRQIRNMEKYKK--LPVIALTAHAMKGDCEKCLSAGCDDYLAKPVNK 1159
Query: 1121 DHLMEAIK 1128
D L++ IK
Sbjct: 1160 DMLIKTIK 1167
>gi|417554678|ref|ZP_12205747.1| GHKL domain protein [Acinetobacter baumannii Naval-81]
gi|417562565|ref|ZP_12213444.1| GHKL domain protein [Acinetobacter baumannii OIFC137]
gi|421201292|ref|ZP_15658451.1| GHKL domain protein [Acinetobacter baumannii OIFC109]
gi|421454193|ref|ZP_15903542.1| GHKL domain protein [Acinetobacter baumannii IS-123]
gi|421634178|ref|ZP_16074797.1| GHKL domain protein [Acinetobacter baumannii Naval-13]
gi|421805706|ref|ZP_16241582.1| GHKL domain protein [Acinetobacter baumannii WC-A-694]
gi|395525147|gb|EJG13236.1| GHKL domain protein [Acinetobacter baumannii OIFC137]
gi|395563324|gb|EJG24977.1| GHKL domain protein [Acinetobacter baumannii OIFC109]
gi|400212960|gb|EJO43917.1| GHKL domain protein [Acinetobacter baumannii IS-123]
gi|400391095|gb|EJP58142.1| GHKL domain protein [Acinetobacter baumannii Naval-81]
gi|408704896|gb|EKL50252.1| GHKL domain protein [Acinetobacter baumannii Naval-13]
gi|410407968|gb|EKP59943.1| GHKL domain protein [Acinetobacter baumannii WC-A-694]
Length = 935
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|374813706|ref|ZP_09717443.1| sensory box sensor histidine kinase/response regulator [Treponema
primitia ZAS-1]
Length = 1170
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 148/298 (49%), Gaps = 52/298 (17%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
+L KQ++A +AER + KS AN SH+IR + I G+ EL + P E R
Sbjct: 445 TLEKQIKALTEAERATQAKSAFLANTSHEIRTPMNAILGMAELILRKDIPQDVYE-EARS 503
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
+ ++LL ++N ILD SK+E+GK+ ++E D+ +G ++ DV+ + + +R + +L
Sbjct: 504 IKQAGSNLLSIINDILDFSKIESGKLDIVEADYQLGSVINDVISI---IRIRLSEKPILF 560
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
D ++ GD V+++Q+L NLLSNAVK+T +GHI
Sbjct: 561 TVDIDSKLPDRLAGDEVRVRQVLMNLLSNAVKYTQKGHI--------------------- 599
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
+ AV QR E+ + + V DTG GI +E +F +
Sbjct: 600 --------------------ILAVTGEQR-EDQIVLSISVTDTGIGIKQEDMGKLFGEFQ 638
Query: 592 QV----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
Q +G GTGLGL I ++L RLMGGDI +VD G +G+ F + +R + +
Sbjct: 639 QFDTHRNQGIEGTGLGLAISRNLCRLMGGDI-VVDSAYG-KGSVFTATILQLVRSSES 694
Score = 47.0 bits (110), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ DD + VA+ L + +G+ A++L++ N++ YD +
Sbjct: 833 RLLIVDDIVTNLNVAKGLLSLYQTDITTVTSGKEAIELIK---NNR----------YDMV 879
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD MP M+G E T IR E ++PII LTA+ + ++ G + + KP+
Sbjct: 880 LMDHMMPEMDGIETTAAIRALEGDYFKNLPIIVLTANAVTGMREMFLQKGFNDYFSKPIE 939
Query: 1120 RDHL 1123
L
Sbjct: 940 ISKL 943
>gi|262374290|ref|ZP_06067566.1| sensor protein gacS [Acinetobacter junii SH205]
gi|262310848|gb|EEY91936.1| sensor protein gacS [Acinetobacter junii SH205]
Length = 936
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 139/296 (46%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + +KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 393 ENIP---QHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMED-DEIG---------- 438
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 439 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + E
Sbjct: 469 DASVTRQFGGTGLGLAISKQLVHLMHGHIGFEDNQERAPTEKGSTFWFTALFKVEE 524
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G +L DD + V E L L T +G+ A+ L++ + + + P+
Sbjct: 661 QGLHVLAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDLIQERIEQK-------LPPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E + + +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDSGMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAIKY 1129
KP+ + +++ + +
Sbjct: 774 TKPIQMEQIIQILTH 788
>gi|126640645|ref|YP_001083629.1| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC
17978]
Length = 906
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 245 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 304
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 305 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 364
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 365 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 410
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 411 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 440
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 441 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 496
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 632 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 684
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 685 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 744
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 745 TKPIQMEQIIQIL 757
>gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
gi|306531995|gb|ADN01529.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
Length = 1272
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 149/318 (46%), Gaps = 59/318 (18%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K EA ++AER KS AN SH+IR L I G +L + P + + L +
Sbjct: 777 KLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLL-ASSFPSGKEASYLDAIRS 835
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
+LL L+N ILD SK+EAGKM L D+ +E++ ++F KG+ +LD +
Sbjct: 836 SGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVEHKGLSFILDYAP 895
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
V+ D ++L+Q+L NL+ NA+KFT +GH+ V
Sbjct: 896 ALP---PTVEIDELRLRQVLFNLIGNAIKFTEQGHVKV---------------------- 930
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+ RG L +E+ ++ T V+DTG GI E+R+ +F+++ Q
Sbjct: 931 ------------QVRGSLHT------EESKVDLTISVEDTGIGIRPEEREAIFQSFHQSS 972
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
+ GGTGLGL I + LV +MGG I V+ E G +GT F N+ D
Sbjct: 973 GQDTRKYGGTGLGLTISKRLVEMMGGTIS-VESEYG-KGTTFTVNI---------PDLTC 1021
Query: 651 QGEKELAGGDSAAGDTQL 668
E+ ++ + GD +
Sbjct: 1022 STERMVSATEETGGDVPM 1039
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
GK ILV DD + R + + L GATV NG+ AL + P D
Sbjct: 1042 GKVILVVDDKDLNRTLLKEYLAPTGATVIEASNGQEALSRAEAH-------------PPD 1088
Query: 1058 YILMDCEMPIMNGYEATRKI-REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
ILMD MP+M+G ++ R+ RN IP+IALTA + E ++ + G L K
Sbjct: 1089 LILMDIRMPVMDGLSFIKEYYRDPSHRN---IPVIALTASVLKERHEEFLRNGFVEVLTK 1145
Query: 1117 PLNRDHLMEAIK 1128
P+ +D L ++
Sbjct: 1146 PIQKDALFSTLR 1157
>gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium
vinosum DSM 180]
gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium
vinosum DSM 180]
Length = 778
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 141/287 (49%), Gaps = 55/287 (19%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA AER + KS AN SH+IR + GI G+ EL E + R + A
Sbjct: 258 EARDAAERANRAKSHFLANMSHEIRTPMNGIIGMTELLQ-ETDLNAAQRDCTRVIQDSAA 316
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE--VVLDPSDG 475
L+ ++N ILD S++EAG+++L DFD E +E ++ +A RKG+E + LDP
Sbjct: 317 ALMRIINDILDMSRIEAGRLELERLDFDPRESIERTLEPLREIAQRKGLEFAIELDPE-- 374
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++++GD +L+QIL+NL+SNA+KFT +G +SV
Sbjct: 375 ---LPARLRGDPGRLRQILTNLVSNAIKFTEQGRVSV----------------------- 408
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY----V 591
++ CL +R ++ + F V DTG G+ E+ +FE + V
Sbjct: 409 -TLDCL-----------------ERTDDWVRFVIAVRDTGIGLSTEECSRLFERFSQADV 450
Query: 592 QVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ GGTGLGL I + LV LMGG I++ K G+ FR + L
Sbjct: 451 STRRRYGGTGLGLAISRQLVELMGGGIDVESKPG--LGSVFRVELVL 495
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 13/131 (9%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q+P G ++LVA+D+ +RV E L L VE NG + L+ +
Sbjct: 644 QRPSLGLRVLVAEDNPANQRVIEWMLTALDCEVELHPNGRSLLESFTAR----------- 692
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
P D +LMDC+MP+M+GYE TR++R+ E +PIIA+TA + ++ I AGMD
Sbjct: 693 --PADLVLMDCQMPVMDGYETTRRLRKLESALGRRVPIIAVTAQAMAGDRERVIAAGMDD 750
Query: 1113 HLGKPLNRDHL 1123
HL KP + L
Sbjct: 751 HLSKPFTLEAL 761
>gi|421656356|ref|ZP_16096664.1| GHKL domain protein [Acinetobacter baumannii Naval-72]
gi|408505745|gb|EKK07464.1| GHKL domain protein [Acinetobacter baumannii Naval-72]
Length = 935
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|421662107|ref|ZP_16102275.1| GHKL domain protein [Acinetobacter baumannii OIFC110]
gi|421694004|ref|ZP_16133636.1| GHKL domain protein [Acinetobacter baumannii WC-692]
gi|404569843|gb|EKA74928.1| GHKL domain protein [Acinetobacter baumannii WC-692]
gi|408714910|gb|EKL60040.1| GHKL domain protein [Acinetobacter baumannii OIFC110]
Length = 935
Score = 132 bits (331), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|421808063|ref|ZP_16243920.1| GHKL domain protein [Acinetobacter baumannii OIFC035]
gi|410416242|gb|EKP68017.1| GHKL domain protein [Acinetobacter baumannii OIFC035]
Length = 935
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|167896670|ref|ZP_02484072.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 7894]
Length = 927
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 428 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 485
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 486 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLS 545
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++QILSNL+ NA+KFT GHIS+
Sbjct: 546 SIGEGVARHYA---GDPTRIRQILSNLIGNAIKFTERGHISI------------------ 584
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 585 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 621
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 622 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 655
Score = 43.1 bits (100), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 701 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 747
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 748 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 802
>gi|445486226|ref|ZP_21457284.1| GHKL domain protein [Acinetobacter baumannii AA-014]
gi|444769711|gb|ELW93879.1| GHKL domain protein [Acinetobacter baumannii AA-014]
Length = 935
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|428211837|ref|YP_007084981.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428000218|gb|AFY81061.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1044
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 144/296 (48%), Gaps = 50/296 (16%)
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPG- 402
RKE L EA AE + +KS+ AN SH++R L I G E+ EA
Sbjct: 781 RKEAQLALQ-----EAAYAAETANRSKSMFLANMSHELRTPLNAIIGYSEMLQEEADDFG 835
Query: 403 -SELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
++L +L ++ + N LL L+N ILD SK+EAGKM L EDF++ EL+E+VV P+
Sbjct: 836 YTDLIPDLEKIRIAGNHLLVLINDILDISKIEAGKMDLYLEDFNIDELIENVVSTAQPLV 895
Query: 462 MRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
R ++++ L ++ D K++QIL NLLSNA KFT G I++ + P
Sbjct: 896 ERNENTLMVECDRDLGLMYA----DLTKVRQILLNLLSNAAKFTKNGQITLSVVLFCPLN 951
Query: 522 IGNPS-LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
+ S ++ ++Q F + DTG GI
Sbjct: 952 MATASPVTGKSSSWIQ--------------------------------FAIADTGIGITP 979
Query: 581 EKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
E+R+ +F+ ++Q GGTGLGL I Q ++MGG+I + + RG+CF
Sbjct: 980 EQRQHLFKPFMQGDASTTREYGGTGLGLAISQRFCQMMGGEISV--ESQPLRGSCF 1033
>gi|169797173|ref|YP_001714966.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE]
gi|215484636|ref|YP_002326871.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294]
gi|239500717|ref|ZP_04660027.1| Sensor protein gacS [Acinetobacter baumannii AB900]
gi|260556077|ref|ZP_05828296.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|301345776|ref|ZP_07226517.1| Sensor protein gacS [Acinetobacter baumannii AB056]
gi|301511166|ref|ZP_07236403.1| Sensor protein gacS [Acinetobacter baumannii AB058]
gi|301594979|ref|ZP_07239987.1| Sensor protein gacS [Acinetobacter baumannii AB059]
gi|332856912|ref|ZP_08436321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6013150]
gi|332867184|ref|ZP_08437449.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6013113]
gi|332874024|ref|ZP_08441959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6014059]
gi|384130575|ref|YP_005513187.1| barA [Acinetobacter baumannii 1656-2]
gi|384141859|ref|YP_005524569.1| GacS-like sensor kinase protein [Acinetobacter baumannii MDR-ZJ06]
gi|385236167|ref|YP_005797506.1| GacS-like sensor kinase protein [Acinetobacter baumannii
TCDC-AB0715]
gi|387125187|ref|YP_006291069.1| signal transduction histidine kinase [Acinetobacter baumannii
MDR-TJ]
gi|407931503|ref|YP_006847146.1| signal transduction histidine kinase [Acinetobacter baumannii
TYTH-1]
gi|416146676|ref|ZP_11601339.1| Signal transduction histidine kinase [Acinetobacter baumannii
AB210]
gi|417545223|ref|ZP_12196309.1| GHKL domain protein [Acinetobacter baumannii OIFC032]
gi|417548913|ref|ZP_12199994.1| GHKL domain protein [Acinetobacter baumannii Naval-18]
gi|417564245|ref|ZP_12215119.1| GHKL domain protein [Acinetobacter baumannii OIFC143]
gi|417570614|ref|ZP_12221471.1| GHKL domain protein [Acinetobacter baumannii OIFC189]
gi|417573478|ref|ZP_12224332.1| GHKL domain protein [Acinetobacter baumannii Canada BC-5]
gi|417577140|ref|ZP_12227985.1| GHKL domain protein [Acinetobacter baumannii Naval-17]
gi|417871210|ref|ZP_12516153.1| Sensor protein gacS [Acinetobacter baumannii ABNIH1]
gi|417875880|ref|ZP_12520680.1| Sensor protein gacS [Acinetobacter baumannii ABNIH2]
gi|417879626|ref|ZP_12524183.1| Sensor protein gacS [Acinetobacter baumannii ABNIH3]
gi|417882286|ref|ZP_12526588.1| Sensor protein gacS [Acinetobacter baumannii ABNIH4]
gi|421201789|ref|ZP_15658944.1| GacS-like sensor kinase protein [Acinetobacter baumannii AC12]
gi|421535285|ref|ZP_15981547.1| GacS-like sensor kinase protein [Acinetobacter baumannii AC30]
gi|421622209|ref|ZP_16063116.1| GHKL domain protein [Acinetobacter baumannii OIFC074]
gi|421625735|ref|ZP_16066581.1| GHKL domain protein [Acinetobacter baumannii OIFC098]
gi|421630525|ref|ZP_16071228.1| GHKL domain protein [Acinetobacter baumannii OIFC180]
gi|421642970|ref|ZP_16083481.1| GHKL domain protein [Acinetobacter baumannii IS-235]
gi|421645639|ref|ZP_16086103.1| GHKL domain protein [Acinetobacter baumannii IS-251]
gi|421651950|ref|ZP_16092315.1| GHKL domain protein [Acinetobacter baumannii OIFC0162]
gi|421657789|ref|ZP_16098037.1| GHKL domain protein [Acinetobacter baumannii Naval-83]
gi|421666336|ref|ZP_16106428.1| GHKL domain protein [Acinetobacter baumannii OIFC087]
gi|421671063|ref|ZP_16111045.1| GHKL domain protein [Acinetobacter baumannii OIFC099]
gi|421677416|ref|ZP_16117308.1| GHKL domain protein [Acinetobacter baumannii OIFC111]
gi|421688310|ref|ZP_16128010.1| GHKL domain protein [Acinetobacter baumannii IS-143]
gi|421701253|ref|ZP_16140759.1| GHKL domain protein [Acinetobacter baumannii IS-58]
gi|421702304|ref|ZP_16141788.1| barA [Acinetobacter baumannii ZWS1122]
gi|421706043|ref|ZP_16145463.1| barA [Acinetobacter baumannii ZWS1219]
gi|421791460|ref|ZP_16227636.1| GHKL domain protein [Acinetobacter baumannii Naval-2]
gi|421796182|ref|ZP_16232249.1| GHKL domain protein [Acinetobacter baumannii Naval-21]
gi|421798701|ref|ZP_16234717.1| GHKL domain protein [Acinetobacter baumannii Canada BC1]
gi|424053672|ref|ZP_17791203.1| hypothetical protein W9G_02864 [Acinetobacter baumannii Ab11111]
gi|424061138|ref|ZP_17798628.1| hypothetical protein W9K_02251 [Acinetobacter baumannii Ab33333]
gi|424064609|ref|ZP_17802093.1| hypothetical protein W9M_02598 [Acinetobacter baumannii Ab44444]
gi|425747233|ref|ZP_18865243.1| GHKL domain protein [Acinetobacter baumannii WC-348]
gi|425753772|ref|ZP_18871640.1| GHKL domain protein [Acinetobacter baumannii Naval-113]
gi|445400251|ref|ZP_21429901.1| GHKL domain protein [Acinetobacter baumannii Naval-57]
gi|445459605|ref|ZP_21447628.1| GHKL domain protein [Acinetobacter baumannii OIFC047]
gi|445465096|ref|ZP_21449874.1| GHKL domain protein [Acinetobacter baumannii OIFC338]
gi|445481384|ref|ZP_21455828.1| histidine kinase A domain / GHKL domain / response regulator
receiver domain / Hpt domain multi-domain protein
[Acinetobacter baumannii Naval-78]
gi|20271376|gb|AAM18622.1|AF497904_1 GacS-like sensor kinase protein [Acinetobacter baumannii]
gi|169150100|emb|CAM87994.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE]
gi|213986830|gb|ACJ57129.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294]
gi|260410132|gb|EEX03431.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|322506795|gb|ADX02249.1| barA [Acinetobacter baumannii 1656-2]
gi|323516664|gb|ADX91045.1| GacS-like sensor kinase protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332726966|gb|EGJ58471.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6013150]
gi|332734123|gb|EGJ65255.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6013113]
gi|332737765|gb|EGJ68657.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acinetobacter baumannii 6014059]
gi|333366057|gb|EGK48071.1| Signal transduction histidine kinase [Acinetobacter baumannii
AB210]
gi|342224496|gb|EGT89526.1| Sensor protein gacS [Acinetobacter baumannii ABNIH2]
gi|342226031|gb|EGT91007.1| Sensor protein gacS [Acinetobacter baumannii ABNIH1]
gi|342227724|gb|EGT92637.1| Sensor protein gacS [Acinetobacter baumannii ABNIH3]
gi|342238027|gb|EGU02469.1| Sensor protein gacS [Acinetobacter baumannii ABNIH4]
gi|347592352|gb|AEP05073.1| GacS-like sensor kinase protein [Acinetobacter baumannii MDR-ZJ06]
gi|385879679|gb|AFI96774.1| signal transduction histidine kinase [Acinetobacter baumannii
MDR-TJ]
gi|395551062|gb|EJG17071.1| GHKL domain protein [Acinetobacter baumannii OIFC189]
gi|395556001|gb|EJG22002.1| GHKL domain protein [Acinetobacter baumannii OIFC143]
gi|395570361|gb|EJG31023.1| GHKL domain protein [Acinetobacter baumannii Naval-17]
gi|398328674|gb|EJN44797.1| GacS-like sensor kinase protein [Acinetobacter baumannii AC12]
gi|400209046|gb|EJO40016.1| GHKL domain protein [Acinetobacter baumannii Canada BC-5]
gi|400383111|gb|EJP41789.1| GHKL domain protein [Acinetobacter baumannii OIFC032]
gi|400389212|gb|EJP52284.1| GHKL domain protein [Acinetobacter baumannii Naval-18]
gi|404561053|gb|EKA66289.1| GHKL domain protein [Acinetobacter baumannii IS-143]
gi|404567855|gb|EKA72970.1| GHKL domain protein [Acinetobacter baumannii IS-58]
gi|404666820|gb|EKB34750.1| hypothetical protein W9K_02251 [Acinetobacter baumannii Ab33333]
gi|404667158|gb|EKB35079.1| hypothetical protein W9G_02864 [Acinetobacter baumannii Ab11111]
gi|404672692|gb|EKB40496.1| hypothetical protein W9M_02598 [Acinetobacter baumannii Ab44444]
gi|407194476|gb|EKE65616.1| barA [Acinetobacter baumannii ZWS1122]
gi|407194678|gb|EKE65815.1| barA [Acinetobacter baumannii ZWS1219]
gi|407900084|gb|AFU36915.1| signal transduction histidine kinase [Acinetobacter baumannii
TYTH-1]
gi|408507071|gb|EKK08773.1| GHKL domain protein [Acinetobacter baumannii OIFC0162]
gi|408511536|gb|EKK13184.1| GHKL domain protein [Acinetobacter baumannii IS-235]
gi|408518267|gb|EKK19793.1| GHKL domain protein [Acinetobacter baumannii IS-251]
gi|408696265|gb|EKL41807.1| GHKL domain protein [Acinetobacter baumannii OIFC074]
gi|408697378|gb|EKL42892.1| GHKL domain protein [Acinetobacter baumannii OIFC180]
gi|408697829|gb|EKL43335.1| GHKL domain protein [Acinetobacter baumannii OIFC098]
gi|408711578|gb|EKL56783.1| GHKL domain protein [Acinetobacter baumannii Naval-83]
gi|409986838|gb|EKO43029.1| GacS-like sensor kinase protein [Acinetobacter baumannii AC30]
gi|410383360|gb|EKP35893.1| GHKL domain protein [Acinetobacter baumannii OIFC099]
gi|410388261|gb|EKP40700.1| GHKL domain protein [Acinetobacter baumannii OIFC087]
gi|410393172|gb|EKP45526.1| GHKL domain protein [Acinetobacter baumannii OIFC111]
gi|410399697|gb|EKP51881.1| GHKL domain protein [Acinetobacter baumannii Naval-21]
gi|410402965|gb|EKP55068.1| GHKL domain protein [Acinetobacter baumannii Naval-2]
gi|410412142|gb|EKP64002.1| GHKL domain protein [Acinetobacter baumannii Canada BC1]
gi|425494121|gb|EKU60336.1| GHKL domain protein [Acinetobacter baumannii WC-348]
gi|425497666|gb|EKU63771.1| GHKL domain protein [Acinetobacter baumannii Naval-113]
gi|444770176|gb|ELW94333.1| histidine kinase A domain / GHKL domain / response regulator
receiver domain / Hpt domain multi-domain protein
[Acinetobacter baumannii Naval-78]
gi|444773799|gb|ELW97890.1| GHKL domain protein [Acinetobacter baumannii OIFC047]
gi|444779228|gb|ELX03222.1| GHKL domain protein [Acinetobacter baumannii OIFC338]
gi|444783633|gb|ELX07492.1| GHKL domain protein [Acinetobacter baumannii Naval-57]
gi|452955833|gb|EME61230.1| signal transduction histidine kinase [Acinetobacter baumannii
MSP4-16]
Length = 935
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|145299082|ref|YP_001141923.1| two-component system hybrid sensor histidine kinase/response
regulator [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142851854|gb|ABO90175.1| two-component system hybrid sensor histidine kinase/response
regulator [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 1319
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 145/305 (47%), Gaps = 61/305 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A Q+AE + KS AN SH+IR + I GL L + P L +++ A
Sbjct: 700 QAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKRDT-PDHTQHDRLEKIDNAAQ 758
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++ ILD SK++AGKM L + DF + +L++V L A KG+ +++D D
Sbjct: 759 HLLTIITDILDLSKIDAGKMVLEQGDFSLTAMLDNVSALMSEQARAKGLTIIVDIGDSP- 817
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ V GD +L+Q L N +NA+KFT +G +++R V++P + +G+L
Sbjct: 818 ---AWVHGDITRLRQALLNYAANAIKFTEQGSVTLRVRVERPLS----------NGYL-- 862
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
FEV+DTG GI E+R+ +F+ + Q
Sbjct: 863 -----------------------------LRFEVEDTGIGISPEQREKLFQAFEQADAST 893
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGE 653
GGTGLGL I L LMGG++ + + +G+CF F L++ QGE
Sbjct: 894 TRKYGGTGLGLAITSRLATLMGGEVGVESTQG--KGSCFWFTALLSL---------GQGE 942
Query: 654 KELAG 658
+ AG
Sbjct: 943 PQQAG 947
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ +D+ + R V L + G +E NG+ AL+ V P+D I
Sbjct: 964 RVLLVEDNAINREVVLELLNNSGLIIETAVNGQEALERVSQH-------------PFDLI 1010
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP+M+GY ATR IR Q PI+ALTA E+ AGM+ + KP+
Sbjct: 1011 LMDIQMPLMDGYTATRAIRTLPGWEQT--PILALTASAFEEDRKACKAAGMNDFIAKPVT 1068
Query: 1120 RDHLMEAIK 1128
L EA++
Sbjct: 1069 PAKLFEALQ 1077
>gi|421675842|ref|ZP_16115761.1| GHKL domain protein [Acinetobacter baumannii OIFC065]
gi|421692525|ref|ZP_16132176.1| GHKL domain protein [Acinetobacter baumannii IS-116]
gi|445451410|ref|ZP_21444763.1| GHKL domain protein [Acinetobacter baumannii WC-A-92]
gi|404559811|gb|EKA65062.1| GHKL domain protein [Acinetobacter baumannii IS-116]
gi|410381359|gb|EKP33925.1| GHKL domain protein [Acinetobacter baumannii OIFC065]
gi|444755081|gb|ELW79674.1| GHKL domain protein [Acinetobacter baumannii WC-A-92]
Length = 935
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|256829408|ref|YP_003158136.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256578584|gb|ACU89720.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 1070
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/312 (33%), Positives = 149/312 (47%), Gaps = 60/312 (19%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
+L++ E + A R KS AN SH++R L GI G+++L P ELE +R
Sbjct: 685 ALVRAKEIAESANRA---KSEFLANISHEVRTPLNGIMGMLQLAMQSEVP-PELEDYIRT 740
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
+ +LL +LN +LD +KV+AGKM++++ DF + +LL V+ F +AM K + +VL
Sbjct: 741 ALESSRNLLRVLNDVLDFTKVDAGKMEIVDRDFSLDDLLSQAVNFFRALAMDKKISLVLS 800
Query: 472 -PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
P D + GD +L+QIL NL+ NA+KFT G +++ A +G
Sbjct: 801 APRD-----IGRFVGDEGRLRQILFNLMGNALKFTDTGSVTLEAW-----PVGE------ 844
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+GD A F V D G GIP +K VFE++
Sbjct: 845 ------------------QGD------------ATRILFAVRDEGIGIPTDKLGYVFESF 874
Query: 591 VQVK----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA- 645
QV GTGLGL IV+ LV LMGG+I + E GE T F L +R A
Sbjct: 875 TQVDGTYSRRYQGTGLGLPIVKRLVTLMGGNISVESME-GEGTTIF---FVLPLRAAPPL 930
Query: 646 NDNNTQGEKELA 657
T + ELA
Sbjct: 931 QQVQTSAQPELA 942
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 14/137 (10%)
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
A +R IL+ +D ++ +A L +G +V NG+ AL L AP
Sbjct: 942 AMTAVRPLGILLVEDDVVNMTMARRMLEKMGHSVICARNGQEALDT----------LQAP 991
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTAHISGEEADKTIEAGM 1110
+ D +LMD +MP M+G EAT +R + +PIIALTAH G + +K + GM
Sbjct: 992 GV---DLVLMDIQMPEMDGIEATEIVRNDPLFTPYARVPIIALTAHAMGGDEEKFLSHGM 1048
Query: 1111 DVHLGKPLNRDHLMEAI 1127
D +L KP + L E +
Sbjct: 1049 DAYLSKPFDHARLQELL 1065
>gi|114766988|ref|ZP_01445907.1| cytoplasmic sensor hybrid histidine kinase [Pelagibaca bermudensis
HTCC2601]
gi|114540834|gb|EAU43897.1| cytoplasmic sensor hybrid histidine kinase [Roseovarius sp.
HTCC2601]
Length = 855
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 148/295 (50%), Gaps = 57/295 (19%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA ++AE S KS AN SH+IR + G+ G+ EL E+ E + +
Sbjct: 320 VEAKRRAEEASHAKSAFLANMSHEIRTPMNGVVGMAELLR-ESALSDEQALYVDTIRNSG 378
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EA ++QL E FD+ + +V+ + P A KG+E+++ D
Sbjct: 379 EALLVIINDILDYSKIEAERLQLKPEPFDLERTVHEVLLMLQPTAREKGLELLV---DYD 435
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRA---CVKKPSAIGNPSLSSSRHG 533
+ ++ GD +++QI +NL+ NAVKFT+EGH+ +R CV++ A
Sbjct: 436 MFLPTRFVGDPGRVRQIFTNLVGNAVKFTNEGHVLIRITGRCVEEGEA------------ 483
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
AV+A V+DTG GIP +K + +F + QV
Sbjct: 484 --------------------AVHAT------------VEDTGIGIPPDKIEHIFGEFNQV 511
Query: 594 KEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
++ GTGLGL I + L LMGG+I V+ E G RG+CF + L + E +
Sbjct: 512 EDDRNRQFEGTGLGLAITKRLTDLMGGEI-WVESEAG-RGSCFGLRMVLPVDEPA 564
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D I MD MP M+G +AT++IR E H+PIIA+TAH + D +EAG+D +L K
Sbjct: 775 DLIFMDISMPRMDGKQATQEIRALEPPG-AHLPIIAVTAHAMTGDRDGILEAGLDDYLTK 833
Query: 1117 PLNRDHLMEAIK 1128
PL + L I+
Sbjct: 834 PLRKQELARLIE 845
>gi|431798970|ref|YP_007225874.1| PAS domain-containing protein [Echinicola vietnamensis DSM 17526]
gi|430789735|gb|AGA79864.1| PAS domain S-box [Echinicola vietnamensis DSM 17526]
Length = 1172
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 148/292 (50%), Gaps = 49/292 (16%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
++ + AE+ + KS AN SH+IR L GI G +L ++ E L +N AN
Sbjct: 525 QSMRHAEQANRAKSEFLANMSHEIRTPLNGIIGFSDLV-LKTELNDRQEQYLSIVNQSAN 583
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK+EAGK+ L E +D+ EL+E D+ V +KG+E++L+ S ++
Sbjct: 584 SLLNIINDILDFSKIEAGKLDLDIERYDLYELVEQASDIITYVIHQKGLEMLLNIS-PNI 642
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+F+ + D V+LKQ+L NLL NA KFT +G I ++ P +S+++G
Sbjct: 643 PRFAWI--DSVRLKQVLVNLLGNASKFTDKGEIELKLT---------PLSNSNKNG---- 687
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY----VQV 593
M+ F V DTG GI EK+ +FE + V
Sbjct: 688 --------------------------EMDIRFSVRDTGIGIKSEKQDKIFEAFSQEDVST 721
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
+ GGTGLGL I L++LMG +++ N RG+ F F++ + + A
Sbjct: 722 TKKYGGTGLGLTISNRLLQLMGSKLQLTSTPN--RGSTFYFDLRIKCEDGQA 771
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 74/146 (50%), Gaps = 21/146 (14%)
Query: 984 EEDGERSQAQKPLRGKK--ILVADDS---MMLRRVAEINLRHLGATVEACENGEAALQLV 1038
+E E+ PL +K IL +D+ M+L + N+ +EA NG+ AL+L+
Sbjct: 905 KEPKEKRLYAPPLLTEKSSILFVEDNAINMLLGKTVIHNISPKTTVLEAS-NGKQALELL 963
Query: 1039 RSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHIS 1098
+ L D I MD +MP MNGYEAT+ IR+E K ++ I ALTA
Sbjct: 964 KVNLPDM-------------IFMDVQMPEMNGYEATKIIRKEYKNK--NLLIFALTAGNL 1008
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLM 1124
E +K +EAGMD + KP + L+
Sbjct: 1009 KGEKEKCMEAGMDDFIAKPFVEEDLI 1034
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGK----KILVADDSMMLRRVAEINLR 1019
L+ ++ GS+ Y I+ EDG+ PL G+ KIL+ DD+ R + E L
Sbjct: 746 LQLTSTPNRGSTFYFDLRIKCEDGQAI----PLEGEPNLHKILIVDDNANNRMIIERMLA 801
Query: 1020 HLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079
G +NG A+Q + G YD ILMD +MP +NG + RKIR
Sbjct: 802 LKGIQTVQAKNGYEAIQRLVDGEE------------YDVILMDFQMPYLNGIDTARKIRA 849
Query: 1080 EEKRNQVHIPIIALTAHISGEEADKTI-----EAGMDVHLGKPLNRDHLMEAI 1127
K PII L H S E DKTI E + L KP+ + +A+
Sbjct: 850 NFKEQ----PIIFL--HSSSE--DKTISLASKELSIPHRLIKPIKMQDMYDAL 894
>gi|193076366|gb|ABO11027.2| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC
17978]
Length = 935
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|403673172|ref|ZP_10935475.1| barA [Acinetobacter sp. NCTC 10304]
Length = 935
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F A+ E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDE 525
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL +++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|418357557|ref|ZP_12960249.1| two-component system hybrid sensor histidine kinase/response
regulator [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|356689146|gb|EHI53692.1| two-component system hybrid sensor histidine kinase/response
regulator [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 1318
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 145/305 (47%), Gaps = 61/305 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A Q+AE + KS AN SH+IR + I GL L + P L +++ A
Sbjct: 699 QAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKRDT-PDHTQHDRLEKIDNAAQ 757
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++ ILD SK++AGKM L + DF + +L++V L A KG+ +++D D
Sbjct: 758 HLLTIITDILDLSKIDAGKMVLEQGDFSLTAMLDNVSALMSEQARAKGLTIIVDIGDSP- 816
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ V GD +L+Q L N +NA+KFT +G +++R V++P + +G+L
Sbjct: 817 ---AWVHGDITRLRQALLNYAANAIKFTEQGSVTLRVRVERPLS----------NGYL-- 861
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
FEV+DTG GI E+R+ +F+ + Q
Sbjct: 862 -----------------------------LRFEVEDTGIGISPEQREKLFQAFEQADAST 892
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGE 653
GGTGLGL I L LMGG++ + + +G+CF F L++ QGE
Sbjct: 893 TRKYGGTGLGLAITSRLATLMGGEVGVESTQG--KGSCFWFTALLSL---------GQGE 941
Query: 654 KELAG 658
+ AG
Sbjct: 942 PQQAG 946
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ +D+ + R V L + G +E NG+ AL+ V P+D I
Sbjct: 963 RVLLVEDNAINREVVLELLNNSGLIIETAVNGQEALERVSQH-------------PFDLI 1009
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP+M+GY ATR IR Q PI+ALTA E+ AGM+ + KP+
Sbjct: 1010 LMDIQMPLMDGYTATRAIRTLPGWEQT--PILALTASAFEEDRKACKAAGMNDFIAKPVT 1067
Query: 1120 RDHLMEAIK 1128
L EA++
Sbjct: 1068 PAKLFEALQ 1076
>gi|119493873|ref|ZP_01624438.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119452385|gb|EAW33576.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1373
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 143/282 (50%), Gaps = 45/282 (15%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A AE + KS AN SH++R L I G +L + SE + +L +N
Sbjct: 889 QAKDAAEAANRAKSEFLANMSHELRTPLNAILGFSQLMNRDPSLTSEQQNSLNIINSSGE 948
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+NSILD SK+EAG+M L E FD+ LL+ + + H KG+ ++ + D +V
Sbjct: 949 HLLTLINSILDLSKIEAGRMILNENSFDLHHLLDTLEKMLHLKVETKGLSLLFE-RDENV 1007
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+F +K D KL+Q+L NLL NA+K+T +G +S++ VK+ S
Sbjct: 1008 PQF--IKTDEGKLRQVLINLLGNAIKYTDKGGVSLK--VKQQS----------------- 1046
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG- 596
Y +K+ E VN FEV DTG GI E+ T+F+ +VQ G
Sbjct: 1047 -----YPLEKSP---ETVN----------LVFEVTDTGTGISSEEISTIFDAFVQTTTGR 1088
Query: 597 --EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ GTGLGL I + V++MGGDI K GT F FN+
Sbjct: 1089 KSQQGTGLGLPISRKFVQMMGGDIRA--KSELGTGTSFEFNL 1128
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 15/130 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD R++ L +G V+ ENG+ AL L S P D+I
Sbjct: 1158 RILVVDDQWQNRQLLLQLLISVGFQVKEAENGQEALNLWNSW--------KP-----DFI 1204
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MPI++GYEAT++IR + +QV I+ALTA ++ +EAG D +GKP
Sbjct: 1205 WMDMRMPILDGYEATQQIRASSEGDQV--VIVALTASAFEQDRGAVLEAGCDDFVGKPFR 1262
Query: 1120 RDHLMEAIKY 1129
+ + E + +
Sbjct: 1263 EEIIFEKLAH 1272
>gi|219670543|ref|YP_002460978.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
DCB-2]
gi|219540803|gb|ACL22542.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
DCB-2]
Length = 896
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 144/293 (49%), Gaps = 53/293 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A ++AE + KS AN SH+IR + GI G+I+L + + ++ E NL+ CA
Sbjct: 388 QAKEKAEAANRAKSEFLANMSHEIRTPINGIIGMIDLTLLTSLEKTQRE-NLKIAKNCAY 446
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
L ++N ILD SK+EAGK+ + E +F++ E++E ++ P A RKG+++ S
Sbjct: 447 SLFKIINDILDFSKIEAGKLTVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLP 506
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ KGD ++KQ+L+NLLSNA+KFT G +S+
Sbjct: 507 DYY---KGDPERIKQVLNNLLSNALKFTERGEVSL------------------------- 538
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK--- 594
AV Q DE+ + F V DTG GI +E + +FE + QV
Sbjct: 539 ----------------AVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDGSI 582
Query: 595 -EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
GGTGLGL I + LV +MGG I + E+G F V L ++ +
Sbjct: 583 TRKYGGTGLGLAISRKLVEMMGGRIWV----ESEKGKGSSFGVVLRLKHGDKD 631
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 18/149 (12%)
Query: 976 RYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAAL 1035
R+K T+ ++ E S A R +IL+A+D ++ V L+ G V+ +GE AL
Sbjct: 634 RFKSTQNNDQSREGSTA----RSYRILLAEDHIVNSIVITEMLKIQGHRVDIAMDGEEAL 689
Query: 1036 QLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA 1095
L H PYD ILMD ++P ++G E T++IR E Q PIIALTA
Sbjct: 690 ALY-------------HQNPYDVILMDIQLPRLDGIEVTKRIRASEG-AQSRTPIIALTA 735
Query: 1096 HISGEEADKTIEAGMDVHLGKPLNRDHLM 1124
+ + + ++AGMD ++ KP+ + L+
Sbjct: 736 YALQGDREGFLQAGMDEYIPKPVMMEELI 764
>gi|423077063|ref|ZP_17065771.1| PAS domain S-box protein [Desulfitobacterium hafniense DP7]
gi|361852015|gb|EHL04303.1| PAS domain S-box protein [Desulfitobacterium hafniense DP7]
Length = 889
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 144/293 (49%), Gaps = 53/293 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A ++AE + KS AN SH+IR + GI G+I+L + + ++ E NL+ CA
Sbjct: 381 QAKEKAEAANRAKSEFLANMSHEIRTPINGIIGMIDLTLLTSLEKTQRE-NLKIAKNCAY 439
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
L ++N ILD SK+EAGK+ + E +F++ E++E ++ P A RKG+++ S
Sbjct: 440 SLFKIINDILDFSKIEAGKLTVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLP 499
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ KGD ++KQ+L+NLLSNA+KFT G +S+
Sbjct: 500 DYY---KGDPERIKQVLNNLLSNALKFTERGEVSL------------------------- 531
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK--- 594
AV Q DE+ + F V DTG GI +E + +FE + QV
Sbjct: 532 ----------------AVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDGSI 575
Query: 595 -EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
GGTGLGL I + LV +MGG I + E+G F V L ++ +
Sbjct: 576 TRKYGGTGLGLAISRKLVEMMGGRIWV----ESEKGKGSSFGVVLRLKHGDKD 624
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 18/149 (12%)
Query: 976 RYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAAL 1035
R+K T+ ++ E S A R +IL+A+D ++ V L+ G V+ +GE AL
Sbjct: 627 RFKSTQNNDQSREGSTA----RSYRILLAEDHIVNSIVITEMLKIQGHRVDIAMDGEEAL 682
Query: 1036 QLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA 1095
L H PYD ILMD ++P ++G E T++IR E Q H PIIALTA
Sbjct: 683 ALY-------------HQNPYDVILMDIQLPRLDGIEVTKRIRASEG-AQSHTPIIALTA 728
Query: 1096 HISGEEADKTIEAGMDVHLGKPLNRDHLM 1124
+ + + ++AGMD ++ KP+ + L+
Sbjct: 729 YALQGDREGFLQAGMDEYIPKPVMMEELI 757
>gi|357126560|ref|XP_003564955.1| PREDICTED: histidine kinase 3-like [Brachypodium distachyon]
Length = 1019
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 178/355 (50%), Gaps = 34/355 (9%)
Query: 320 LLIVMTVGVL-ISMLT-FVFKSA--RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFA 375
L I ++G L I++LT ++F + R A+ E ME ++AE + KS A
Sbjct: 385 LAITSSLGTLVIALLTGYIFHATVHRIAKVE----DDYQNMMELKKRAEAADIAKSQFLA 440
Query: 376 NASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAG 435
SH+IR + G+ G++++ ++ + + +R L+ L+N +LD +K+E+G
Sbjct: 441 TVSHEIRTPMNGVLGMLQML-MDTDLDTTQQDFVRTAQASGKALVSLINEVLDQAKIESG 499
Query: 436 KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILS 495
K++L FD+ + +D++ LF A KG+E+ + SD + GD +++QI++
Sbjct: 500 KLELEAVPFDLRIVCDDILSLFCGKAQEKGLELAVYVSDQVP---QTLIGDPGRMRQIIT 556
Query: 496 NLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAV 555
NL+SN++KFT GHI + V + +G + + H + ++S N+ R E+
Sbjct: 557 NLMSNSIKFTERGHIYLTVHVVE-EVMGCLEVKTGTH-YTNTLSGYPVANR--RRSWESF 612
Query: 556 NAAQRDENAMEFTF------------EVDDTGKGIPKEKRKTVFENYVQVKEG----EGG 599
D ++ E F V+DTG GIP E + +F Y+QV GG
Sbjct: 613 RLFDMDLHSSEMPFTPVTPDTIRLIISVEDTGAGIPFEAQYRIFTPYMQVGPSIARIHGG 672
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
TG+GL I + LV LM G+I V K + G+ F F L +++ N N + G K
Sbjct: 673 TGIGLSISKCLVHLMKGEIGFVSKPH--VGSTFSFTAVLTRAQSNGNLNKSSGFK 725
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 29/149 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L K+I+V DD+ + +VA L+ GA V ++G+ A+ L PHI
Sbjct: 872 LHKKQIIVVDDNAVNLKVAAGALKKYGAVVTCADSGKKAIAY----------LSPPHI-- 919
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR-----------------NQVHIPIIALTAHIS 1098
+D MD +MP M+G++AT++IR+ E + + PI+A+TA +
Sbjct: 920 FDACFMDIQMPEMDGFQATKEIRKMESKLNEKIESGDVPPECVNVRRWRTPILAMTADVI 979
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ ++ MD ++ KP + L +
Sbjct: 980 QATYEECLKCEMDGYVSKPFEGEQLYREV 1008
>gi|374299148|ref|YP_005050787.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332552084|gb|EGJ49128.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 1232
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 156/305 (51%), Gaps = 59/305 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA-- 416
A +QAE + KS AN SH+IR + G+ G+I+L ++ +L T +R+ + A
Sbjct: 836 AKEQAEIANRAKSDFLANMSHEIRTPMNGVMGMIDLSLMQ-----KLPTRVREYQIMAKK 890
Query: 417 --NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
+ LL ++ ILD SK+EAG+M+L E+ FDV +L+E V A KG++ +L D
Sbjct: 891 SADHLLSIIGDILDLSKIEAGRMELTEDIFDVRDLVEGTVRPLALTAADKGLK-LLHAVD 949
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
+ + GD V+L+Q+L+NL+SNAVKFT +G + V + R G
Sbjct: 950 ADIPPL--LCGDPVRLRQVLANLVSNAVKFTHKGRVLV---------------NVERTGH 992
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
DL RDE + F V DTG GIP+EK +FE++ Q +
Sbjct: 993 ----------------DL------PRDE--VRLLFSVSDTGIGIPREKLSLIFESFSQAE 1028
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
E GGTGLGL I + LV +MGG I V+ G +G+ F F V L R+A A
Sbjct: 1029 EATHARYGGTGLGLAISKRLVEMMGGHIG-VESVMG-KGSRFFFTVRL--RKADAMPKAE 1084
Query: 651 QGEKE 655
+ E E
Sbjct: 1085 RSETE 1089
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 21/156 (13%)
Query: 971 GEGSSRYKQTEIEEEDG----ERSQAQK---PLRGKKILVADDSMMLRRVAEINLRHLGA 1023
G+GS + + + D ERS+ ++ P R +IL+A+D+ + R +A L LG
Sbjct: 1063 GKGSRFFFTVRLRKADAMPKAERSETEEGRPPTRHLRILLAEDNEINRILAIELLHELGH 1122
Query: 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKR 1083
V A ENG AL+ L +R +D +LMD +MP M G EA R+IREE
Sbjct: 1123 EVTAVENGRLALE----ALGRER---------FDLVLMDVQMPEMGGLEAVRRIREEPPA 1169
Query: 1084 N-QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+P++ALTA+ + ++ + AGMD +L KP+
Sbjct: 1170 GVDPRLPVVALTAYALEGDRERFLAAGMDGYLSKPI 1205
>gi|226198683|ref|ZP_03794247.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei Pakistan 9]
gi|225929123|gb|EEH25146.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei Pakistan 9]
Length = 1032
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 139/272 (51%), Gaps = 51/272 (18%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET-NLRQM 412
+K EA A++ + KS A SH+IR L I G +EL + P SE ++ L +
Sbjct: 535 LKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLHVV 592
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 593 ESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSSI 652
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 653 GEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI-------------------- 689
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
D+ AA RD +A+E V+DTG GI ++ T+F+ Y Q
Sbjct: 690 ------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVYTQ 728
Query: 593 ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
+ GG+GLGL + Q LV +MGG IEI
Sbjct: 729 ADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 760
Score = 43.5 bits (101), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 806 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 852
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 853 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 907
>gi|170727652|ref|YP_001761678.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
gi|169812999|gb|ACA87583.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
Length = 1582
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 155/323 (47%), Gaps = 62/323 (19%)
Query: 327 GVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALA 386
+ IS + +A+ KE+ L + Q+A+ + KS AN SH+IR +
Sbjct: 807 AIRISGINVNIDAAKQLEKELEL---------SKQKADSANRAKSDFLANMSHEIRTPMN 857
Query: 387 GITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV 446
I G+ L +E + + ++N A LLG++N ILD SK+EAGK+ + + DF +
Sbjct: 858 AIIGMSHLA-LETDLDRKQRNYIDKVNRSAESLLGIINDILDFSKIEAGKLDIEKIDFSL 916
Query: 447 GELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS 506
++LEDV DL A KG+E++ + F+ GD ++L Q+L+NL +NA+KFT
Sbjct: 917 EDVLEDVSDLVGFKAKDKGIELLFNTESSLPFYFN---GDPLRLSQVLTNLSNNAIKFTE 973
Query: 507 EGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME 566
+G + ++ V A +E +E
Sbjct: 974 QGEVQIK-----------------------------------------VYAHSINETNIE 992
Query: 567 FTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVD 622
FE+ DTG G+ KE++ +F+ + Q GGTGLGL I Q+LV LMGG I
Sbjct: 993 LAFEISDTGIGMSKEQQLKLFKAFSQADSSTTRKHGGTGLGLVISQNLVELMGGVISFES 1052
Query: 623 KENGERGTCFRFNVFLAIREASA 645
+E G+CF+F L + ASA
Sbjct: 1053 EEG--VGSCFKF--ILPLTPASA 1071
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 15/128 (11%)
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
A K L G IL+A+D+ + R + L + T NG+ A+ +
Sbjct: 1225 ALKQLAGAHILIAEDNDLNRELIVDLLSNNQITSVVAMNGQEAIDCLLKE---------- 1274
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
+D +LMDC+MP+M+GY AT+KIRE E + +PIIA+TA+ + +K I GM
Sbjct: 1275 ---SFDGVLMDCQMPVMDGYTATKKIREVEGLSA--LPIIAMTANAMAGDREKAIGCGMT 1329
Query: 1112 VHLGKPLN 1119
H+ KP+N
Sbjct: 1330 DHISKPIN 1337
>gi|357635233|ref|ZP_09133111.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
sp. FW1012B]
gi|357583787|gb|EHJ49120.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
sp. FW1012B]
Length = 735
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 148/303 (48%), Gaps = 60/303 (19%)
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS 403
RKE L A+L +A + AER S KS AN SH+IR + GI G+I L +++ P
Sbjct: 470 RKE--LTAALC---QAKETAERASRAKSDFMANMSHEIRTPMNGIMGMIHLARLKS-PDP 523
Query: 404 ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
L L ++ A LLG++N +LD +K+EAGK++L+ E F + + ++ A
Sbjct: 524 ALAQYLDLADLSARHLLGIVNDVLDLAKMEAGKVRLLREPFALRREIRAAIEPMQAAAGE 583
Query: 464 KGVEVVL----DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
KG+ + L D D V GD +L+Q+L+N++ NAVKFT GH+ +R +
Sbjct: 584 KGLALALAVAPDVPDA-------VTGDAGRLRQVLANVVGNAVKFTGTGHVDIRVEL--- 633
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
+ A GD EAV F V DTG GIP
Sbjct: 634 -------------------------DDDAAGD-EAV--------VRRLRFTVRDTGIGIP 659
Query: 580 KEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
++ +FE++ Q GG GLGL I + LV MGG I++ +E GE G+ F F
Sbjct: 660 ADRLDDIFESFEQAHTSAHVLYGGAGLGLPISRRLVEFMGGTIDVASRE-GE-GSTFTFT 717
Query: 636 VFL 638
V+L
Sbjct: 718 VWL 720
>gi|226954327|ref|ZP_03824791.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244]
gi|226834905|gb|EEH67288.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244]
Length = 936
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 140/299 (46%), Gaps = 51/299 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + +KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 393 ENIP---QHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDD-IG---------- 438
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 439 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIREASA 645
V GGTGLGL I + LV LM G I D + E+G+ F F + E A
Sbjct: 469 DASVTRQFGGTGLGLAISKQLVHLMRGQIGFEDNQERAPTEKGSTFWFTAAFKVEEEDA 527
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G +L DD + V E L L T +G+ A+ L++ + + +P P+
Sbjct: 661 QGLHVLAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDLIQERIEQK----SP---PF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E + + +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESKLDTGMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|89896124|ref|YP_519611.1| hypothetical protein DSY3378 [Desulfitobacterium hafniense Y51]
gi|89335572|dbj|BAE85167.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 896
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 144/293 (49%), Gaps = 53/293 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A ++AE + KS AN SH+IR + GI G+I+L + + ++ E NL+ CA
Sbjct: 388 QAKEKAEAANRAKSEFLANMSHEIRTPINGIIGMIDLTLLTSLEKTQRE-NLKIAKNCAY 446
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
L ++N ILD SK+EAGK+ + E +F++ E++E ++ P A RKG+++ S
Sbjct: 447 SLFKIINDILDFSKIEAGKLTVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLP 506
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ KGD ++KQ+L+NLLSNA+KFT G +S+
Sbjct: 507 DYY---KGDPERIKQVLNNLLSNALKFTERGEVSL------------------------- 538
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK--- 594
AV Q DE+ + F V DTG GI +E + +FE + QV
Sbjct: 539 ----------------AVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDGSI 582
Query: 595 -EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
GGTGLGL I + LV +MGG I + E+G F V L ++ +
Sbjct: 583 TRKYGGTGLGLAISRKLVEMMGGRIWV----ESEKGKGSSFGVVLRLKHGDKD 631
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 18/149 (12%)
Query: 976 RYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAAL 1035
R+K T+ ++ E S A R +IL+A+D ++ V L+ G V+ +GE AL
Sbjct: 634 RFKSTQNNDQSREGSTA----RSYRILLAEDHIVNSIVITEMLKIQGHRVDIAMDGEEAL 689
Query: 1036 QLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA 1095
L H PYD ILMD ++P ++G E T++IR E Q H PIIALTA
Sbjct: 690 ALY-------------HQNPYDVILMDIQLPRLDGIEVTKRIRASEG-AQSHTPIIALTA 735
Query: 1096 HISGEEADKTIEAGMDVHLGKPLNRDHLM 1124
+ + + ++AGMD ++ KP+ + L+
Sbjct: 736 YALQGDREGFLQAGMDEYIPKPVMMEELI 764
>gi|406035762|ref|ZP_11043126.1| Sensor protein gacS [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 936
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 140/297 (47%), Gaps = 51/297 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + +KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLTNEQNLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 393 ENIP---QHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDED-IG---------- 438
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 439 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIREA 643
V GGTGLGL I + LV LM G I D + E+G+ F F + +A
Sbjct: 469 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTALFKLEQA 525
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 9/135 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G +L DD + V E L L T +G+ A+ +++ + + + P+
Sbjct: 661 QGLHVLAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDMIQQRIEQK-------LPPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQV--HIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E + +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDIGMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAIKY 1129
KP+ + +++ + +
Sbjct: 774 TKPIQMEQIIQILTH 788
>gi|359413616|ref|ZP_09206081.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
gi|357172500|gb|EHJ00675.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
Length = 940
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 141/288 (48%), Gaps = 53/288 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A +QAE ++ KS AN SH+IR + GI G +EL +E +R+ ++
Sbjct: 310 KAKEQAEAANIAKSQFIANMSHEIRTPMNGIFGFLELLQ-STDLSTEQREFIREAKSASD 368
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK+EA K+ + F++ +ED V L P A KG+E+ G
Sbjct: 369 ILLDIVNDILDFSKIEAKKLTMENIKFNLRTTIEDAVSLIAPKAATKGIELYAMIKSGVP 428
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+V GD +L+QIL+NL+SNAVKFT+EG ISV S
Sbjct: 429 ---EEVIGDPSRLRQILNNLISNAVKFTTEGEISV------------------------S 461
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+S L +EN M FEV DTG GI KE +F+++ Q
Sbjct: 462 VSYL------------------EEENEMALLNFEVKDTGIGIRKEDINKIFKSFSQADAS 503
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I LV++MGG EI + G+ F+FNV L I
Sbjct: 504 TTRKYGGTGLGLAICNELVKMMGG--EIWAQSVFGEGSTFKFNVRLKI 549
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 14/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KIL+ +D+ + R++ L+ T + NG AL V ++D YD +
Sbjct: 713 KILLVEDNEVNRKIVIRMLKSRNMTCDVAINGSDALDAVS-----KKD--------YDVV 759
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MDC+MP+M+GYE+T +IR E ++ H IIA+TA+ + +K I+AGMD ++ KP++
Sbjct: 760 FMDCQMPVMDGYESTARIRHLEG-DKKHTTIIAMTANAMAGDCEKCIKAGMDAYISKPID 818
Query: 1120 RDHLMEAIK 1128
D + + I+
Sbjct: 819 FDKMFKMIE 827
Score = 41.2 bits (95), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 16/161 (9%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQK----PLRGKKILVADDSMMLRRVAEINLRHLGATVE 1026
GEGS+ + + + +R+ QK + +L+ DD+ R + +L G +
Sbjct: 536 GEGSTF--KFNVRLKIAKRANKQKFDFEKFKNINVLIVDDNENNRNIFSSHLEKTGLNIF 593
Query: 1027 ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV 1086
E +A+ + S N + + L+D +MP MNGYE +R +
Sbjct: 594 QAEGATSAITAIISKANTENKINIA--------LIDYQMPGMNGYELATTLRTMPFAKDI 645
Query: 1087 HIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+I LT+ + E G L KP+ +D L+ I
Sbjct: 646 Q--LILLTSVTQKVDIKSIKEYGFSTLLAKPVKKDDLLSCI 684
>gi|162456717|ref|YP_001619084.1| two-component hybrid sensor and regulator [Sorangium cellulosum So
ce56]
gi|161167299|emb|CAN98604.1| two-component hybrid sensor and regulator [Sorangium cellulosum So
ce56]
Length = 553
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 143/280 (51%), Gaps = 42/280 (15%)
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSI 426
S +KS AN SH++R L I G +L + NL + LLGL+N I
Sbjct: 76 SRSKSAFLANMSHELRTPLNSILGFAQLVERDPSLADRHRENLAVICKSGEHLLGLVNDI 135
Query: 427 LDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGD 486
L+ +K+EAG+M L++ +FD+ + L + ++F A ++G+ + ++ + V GD
Sbjct: 136 LEMAKIEAGRMTLVDAEFDLHDTLSGLSEMFAVEAQKRGLTLTVERAQDVP---RHVHGD 192
Query: 487 RVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNK 546
KL+Q+L NLL NA+KFT G +++RA ++ + + +
Sbjct: 193 EGKLRQVLINLLGNALKFTPRGSVTLRASARRATGAHDGA-------------------- 232
Query: 547 KARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG---GTGLG 603
AA R + +FEV DTG+G+ K + +FE + Q G GTGLG
Sbjct: 233 ----------AAGR----VRVSFEVTDTGRGMAKAELAELFEAFAQTATGRQSREGTGLG 278
Query: 604 LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
L I + +VR+MGGDI V+ + G RGT RF+V L++ +A
Sbjct: 279 LHISRRIVRMMGGDIR-VESQVG-RGTTLRFDVRLSLADA 316
Score = 45.1 bits (105), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV DD +R L +G + NG A+ Q + APH+ +
Sbjct: 344 RVLVVDDRWDVRHCLLKLLDSVGVEARSATNGLGAVA--------QWETWAPHL-----V 390
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+D MP+++GYEA +I+ + ++ ++A+TA + EAG D + KP
Sbjct: 391 LLDLRMPLLDGYEAASRIKASARGHET--VVVAMTASAFEQNRALAAEAGCDDFVSKPFR 448
>gi|78355591|ref|YP_387040.1| multi-sensor hybrid histidine kinase [Desulfovibrio alaskensis G20]
gi|78217996|gb|ABB37345.1| multi-sensor hybrid histidine kinase [Desulfovibrio alaskensis G20]
Length = 981
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 144/298 (48%), Gaps = 64/298 (21%)
Query: 349 LCASLIKQME-ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET 407
L A +++E A AE+ S K A+ SH++R + I G+IE+ +EL
Sbjct: 247 LVAERTQELEHARHTAEQASKAKGDFVASMSHELRTPMNAIIGMIEIAL-----KTELTV 301
Query: 408 NLRQ----MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
R+ + A LLG++N ILD SK+EA KM+L F E+LE+V DLF
Sbjct: 302 KQREYLTIIRSSARSLLGVVNDILDISKIEAQKMELEHIPFSTQEMLEEVTDLFRERVGM 361
Query: 464 KGVEVVLD-PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI 522
KGVE+VLD +D + + GD ++LKQ+L NL++NA KFT +G + +R V
Sbjct: 362 KGVELVLDIEADVPAV----LVGDPLRLKQVLVNLVTNAFKFTKQGEVRIRVAV------ 411
Query: 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK 582
R ++ ++ F V DTG GI +E
Sbjct: 412 -----------------------------------GSRSQDVVQLEFSVRDTGLGIGEEA 436
Query: 583 RKTVFENYVQVKEGE-----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
R +F+ + Q EG GG+GLGL I + LVRLMGG I + + +G+ FRF
Sbjct: 437 RNRLFDTFSQA-EGSTARLFGGSGLGLSIARELVRLMGGTITVASEPG--KGSDFRFT 491
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 94/160 (58%), Gaps = 9/160 (5%)
Query: 969 SSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEAC 1028
SS + R + E+ E+ + + G + L+ +D+++ R VA L+ +G +V +
Sbjct: 622 SSLSDAIRAMRGEMTPEEQTDTAMIRQFDGMRALLVEDNIINRHVALDMLQDMGFSVVSA 681
Query: 1029 ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHI 1088
E+GE AL ++ D+ P +D + MD +MP+M+G EATR IR+ + HI
Sbjct: 682 EHGEEALAVLD-------DVEPPSGPGFDVVFMDIQMPVMDGIEATRVIRQHPRWR--HI 732
Query: 1089 PIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
PIIA+TAH+ E+ DK +EAGM+ ++ KP++R L++ ++
Sbjct: 733 PIIAMTAHVMSEDRDKALEAGMNDYVTKPVDRMMLLQVLQ 772
>gi|378733369|gb|EHY59828.1| hpt sensor hybrid histidine kinase [Exophiala dermatitidis
NIH/UT8656]
Length = 1454
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 123/425 (28%), Positives = 199/425 (46%), Gaps = 79/425 (18%)
Query: 356 QMEATQQAERK-SMNKSLAFANASHDIRAALAGITGLIELCYVEA--GPGSELETNLRQM 412
Q+ A ++A ++ S KS AN SH+IR +AG+ G+ +L A SE N+++
Sbjct: 705 QLLANERAAKEASKMKSNFLANMSHEIRTPIAGVLGMSDLLMDTALDEEQSEFAQNIQR- 763
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
AN LL ++N ILD SK+E+G++ + E F + +LEDV + A RKG+E D
Sbjct: 764 --SANSLLTVINDILDFSKIESGRLDIEEVQFSLNVVLEDVSKMLLYAAQRKGLEFCSDI 821
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
GS + + GD +++QIL+NLL+N++KFTS+G++ + AC+ ++
Sbjct: 822 RLGSSPDLA-LLGDPGRIRQILTNLLTNSIKFTSDGYVKLGACITSETS----------- 869
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+++ F V+D+G GI +E +K +F + Q
Sbjct: 870 ------------------------------DSITVEFSVEDSGIGIEEEVKKRLFSPFSQ 899
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDK-ENGERGTC--------FRFNVFLA 639
GGTGLGL I ++LV LM G I + K + G + T ++
Sbjct: 900 ADSSTARRFGGTGLGLTICKNLVALMHGTISLESKLDAGTKATFVIPFKKPEYQNTASPT 959
Query: 640 IREASANDNNTQGEKELAGGDSAAG-DTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGS 698
+ + + Q E L+ G S+ + Q ++ +K PSP +SP L P S
Sbjct: 960 LLDVGMMPDRLQSELSLSMGTSSKEVKRRSQRLSPPIKLPSPPSVTGGSSP---ALVPSS 1016
Query: 699 RHEGS---------HVVLLIANEERRRIAQKFMENLGINVSAVSRW---ERLHSTLKRLK 746
E S H++++ N ++IA +F++ LG + SAV W E L LK
Sbjct: 1017 ATETSMSDVQRGQYHILVVEDNPVNQQIALRFIKALGFSASAV--WNGKEALEYLLKATS 1074
Query: 747 SKFGS 751
S S
Sbjct: 1075 SDMTS 1079
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 20/211 (9%)
Query: 934 IMPN---ASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRY----KQTEIEEED 986
+MP+ + + L G SS E RR + + L + S GSS TE D
Sbjct: 965 MMPDRLQSELSLSMGTSSKEVKRRSQRLSPPIKLPSPPSVTGGSSPALVPSSATETSMSD 1024
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ-LVRSGLNDQ 1045
+R Q ILV +D+ + +++A ++ LG + A NG+ AL+ L+++ +D
Sbjct: 1025 VQRGQYH-------ILVVEDNPVNQQIALRFIKALGFSASAVWNGKEALEYLLKATSSDM 1077
Query: 1046 RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV----HIPIIALTAHISGEE 1101
A ILMD +MP+++GY T +R + IP++A+TA +
Sbjct: 1078 TSEQAQAYPMPSLILMDVQMPVLDGYRTTHMMRYHAPFTSIPVISRIPVVAMTASAIHGD 1137
Query: 1102 ADKTIEAGMDVHLGKPLNRDHLMEAI-KYLH 1131
+K +AGMD ++ KP+ R L + I K+++
Sbjct: 1138 REKCEKAGMDDYMAKPVKRTLLEQKIMKWIY 1168
>gi|386286488|ref|ZP_10063678.1| signal transduction histidine kinase [gamma proteobacterium BDW918]
gi|385280638|gb|EIF44560.1| signal transduction histidine kinase [gamma proteobacterium BDW918]
Length = 862
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 142/290 (48%), Gaps = 63/290 (21%)
Query: 363 AERKSMN----KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ----MNV 414
A R+++N KS AN SH+IR L GI G + SELE R+ +N
Sbjct: 254 ARREAVNASRIKSEFLANTSHEIRTPLNGIIGFSNILL-----KSELEIRQREAIETINS 308
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
AN LL ++N ILD SK+EAGK+ L ++ EL+ED + + P A K +E++L
Sbjct: 309 SANSLLTIINDILDFSKLEAGKLVLDSAPVNLRELIEDTLQILAPGATDKSLELILTIQQ 368
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
G V D ++LKQIL+NL++NA+KFT GHI + SS H
Sbjct: 369 GCP---KTVLADALRLKQILTNLINNAIKFTQAGHILINVL-------------SSDH-- 410
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ-- 592
+E T +V DTG G+ KE++K +F+++ Q
Sbjct: 411 --------------------------NEQHAAVTIQVSDTGIGLSKEQQKKIFKDFAQAD 444
Query: 593 --VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
+ GGTGLGL IV+ L+ MGG+I I + E G+ GT F F + I
Sbjct: 445 ASITRQYGGTGLGLVIVKGLIEQMGGEIGI-ESELGQ-GTTFWFTINFPI 492
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL DD+ + + L LG T + ++G A++ QR +D I
Sbjct: 624 ILAVDDNPSNLHILDRFLSDLGVTTTSAKDGSEAVE----QCTKQR---------FDLIF 670
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP M+G E +R+IR + PIIAL+A++S E + EAG++ +L KP+
Sbjct: 671 MDIQMPKMDGIETSRRIRANGLNRET--PIIALSAYLSPENPLQLREAGINDYLSKPVTE 728
Query: 1121 DHLMEAI 1127
L E +
Sbjct: 729 HQLDELL 735
>gi|254299737|ref|ZP_04967186.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 406e]
gi|157809305|gb|EDO86475.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 406e]
Length = 1035
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 536 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 593
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 594 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLS 653
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 654 SIGEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 692
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 693 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 729
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 730 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 763
Score = 43.5 bits (101), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 809 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 855
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 856 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 910
>gi|167826595|ref|ZP_02458066.1| two-component system sensor protein [Burkholderia pseudomallei 9]
Length = 923
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 424 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 481
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 482 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLS 541
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 542 SIGEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 580
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 581 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 617
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 618 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 651
Score = 43.5 bits (101), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 697 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 743
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 744 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 798
>gi|237509957|ref|ZP_04522672.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei MSHR346]
gi|235002162|gb|EEP51586.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei MSHR346]
Length = 1032
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 139/272 (51%), Gaps = 51/272 (18%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQM 412
+K EA A++ + KS A SH+IR L I G +EL + P SE ++ L +
Sbjct: 535 LKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLHVV 592
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 593 ESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSSI 652
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 653 GEGVARHYA---GDPTRIRQVLSNLIGNAIKFTERGHISI-------------------- 689
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
D+ AA RD +A+E V+DTG GI ++ T+F+ Y Q
Sbjct: 690 ------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVYTQ 728
Query: 593 ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
+ GG+GLGL + Q LV +MGG IEI
Sbjct: 729 ADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 760
Score = 43.5 bits (101), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 806 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 852
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 853 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 907
>gi|126455824|ref|YP_001074202.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1106a]
gi|242312265|ref|ZP_04811282.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1106b]
gi|403521445|ref|YP_006657014.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei BPC006]
gi|126229592|gb|ABN93005.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1106a]
gi|242135504|gb|EES21907.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1106b]
gi|403076512|gb|AFR18091.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei BPC006]
Length = 1032
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET-NLR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 533 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 590
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 591 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLS 650
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 651 SIGEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 689
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 690 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 726
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 727 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 760
Score = 43.5 bits (101), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 806 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 852
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 853 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 907
>gi|359441190|ref|ZP_09231091.1| hypothetical protein P20429_1455 [Pseudoalteromonas sp. BSi20429]
gi|358036897|dbj|GAA67340.1| hypothetical protein P20429_1455 [Pseudoalteromonas sp. BSi20429]
Length = 1587
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 147/284 (51%), Gaps = 52/284 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE ++ KS A SH+IR + G+ G++EL +E+ P +ET + A+
Sbjct: 1060 ALVKAEDAAIAKSQFLATMSHEIRTPMNGVLGMLELVQLESLP-KPIETKVGIAKTSAHS 1118
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LLG++N ILD SK EAGK++L E +F+ +L+ +V A KG+E++LD L
Sbjct: 1119 LLGVINDILDFSKAEAGKIELEEINFNGRDLIGEVAAAQALTAQEKGIEIILDL---VAL 1175
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+ S++ GD +++Q+L+NLLSNAVKFTS+G + V A +
Sbjct: 1176 EPSQLCGDPGRIRQVLTNLLSNAVKFTSKGEVVVSAKI---------------------- 1213
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
NK A+G +EF + D+G GI +EK++ +F + QV
Sbjct: 1214 ------NKVAQG--------------LEFVVSIKDSGIGISEEKQQQLFTPFSQVDASTT 1253
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GG+GLGL I + L LMGG I + E G +G+ F + L
Sbjct: 1254 REYGGSGLGLAICKQLCELMGGAISLT-SEAG-KGSTFTATIML 1295
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 26/179 (14%)
Query: 955 DIMPNASVLLKTGNSSGEG----SSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMML 1010
D++ SV+ T N +GE +S Y + +E+ E SQ IL+ +D+ +
Sbjct: 1427 DLISALSVI--TSNDAGEALPLVTSGYISSLKKEKMQESSQ---------ILLVEDNPIN 1475
Query: 1011 RRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG 1070
++VA++ L+ L V NG+ A+ ++ + D G + +LMDC+MP+M+G
Sbjct: 1476 QQVAKLMLKKLNCDVTIAGNGQLAIDILEA-----HDSGY-----FKLVLMDCQMPVMDG 1525
Query: 1071 YEATRKIREEEKRNQ-VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ AT IR+ Q +I IIA+TA+ + ++ I AGMD +L KP+ D L + ++
Sbjct: 1526 FAATAAIRKGVAGIQHKNIKIIAITANAMNSDKERCITAGMDDYLSKPIQLDILKDKLE 1584
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHI----LP 1055
+LV DD+ R V L H GA V AC+ EA D+ A H
Sbjct: 1315 VLVVDDNETNRIVISQQLEHWGAKVALACDAHEAL------------DMCAQHYKSNNCM 1362
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD ++D +MP M+G E + ++ E +P++ +T+ E A + +AG +
Sbjct: 1363 YDIAVLDMQMPGMDGIELCKALKAHEHYKS--MPLVMMTSIAGMEGAQRYSDAGFQAYFP 1420
Query: 1116 KPLNRDHLMEAI 1127
KP+ L+ A+
Sbjct: 1421 KPVTTADLISAL 1432
>gi|168005241|ref|XP_001755319.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693447|gb|EDQ79799.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 305
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 181/374 (48%), Gaps = 76/374 (20%)
Query: 379 HDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQ 438
H++R +A I GL+++ +E E E ++RQ++ CA L+ LLNS LD +KVE+GK+
Sbjct: 1 HELRTPMACIIGLLDMLLME-NLTVEHEGSIRQIHRCATSLVSLLNSALDIAKVESGKLV 59
Query: 439 LIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLL 498
L + +F++ L ++D+F K + + LD +D V K +V GD ++ Q+ +NL+
Sbjct: 60 LEKAEFNLEAELTALIDVFSVQCDNKNLFISLDVAD-DVPK--RVIGDSARVMQVFTNLV 116
Query: 499 SNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAA 558
N++KFTS+G I VR I NP +S ++ + LE A
Sbjct: 117 GNSLKFTSKGRIMVRG------RIANPE---------TDVSGRLHRRSFSPFSLERYTEA 161
Query: 559 QRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGT-------GLGLGIVQSLV 611
+ + FEVDDTG GI R+ +FEN+VQ G T GLGLGIV+SLV
Sbjct: 162 SSAPDTVVLVFEVDDTGPGIEPALREKIFENFVQ---GNASTTRTHGGTGLGLGIVRSLV 218
Query: 612 RLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHM 671
+LMGG I IV+K G F+F++ + A+ D
Sbjct: 219 QLMGGSIRIVEKSGP--GVVFQFSI--CFQRATTCD------------------------ 250
Query: 672 NLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSA 731
T + PS ++G+ +++ I + + R +A K++ G+NV
Sbjct: 251 -FTPFSLPPS------------------YQGTEIIVGIPDADCRGVACKWITKFGLNVHQ 291
Query: 732 VSRWERLHSTLKRL 745
V WE++ ++ L
Sbjct: 292 VESWEQILLYMRAL 305
>gi|409203280|ref|ZP_11231483.1| sensor protein [Pseudoalteromonas flavipulchra JG1]
Length = 1103
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 154/319 (48%), Gaps = 67/319 (21%)
Query: 339 SARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVE 398
+A A+KE+ +A Q AE+ + KS A+ SH+IR + G+ G++ L E
Sbjct: 541 AAVEAKKELE---------QAKQAAEQGAQAKSEFLASMSHEIRTPMNGVIGMLSLLEDE 591
Query: 399 AGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFH 458
++L M A LL L+N ILD SK+EAGK++L DFDV LL ++++
Sbjct: 592 HLTQTQLHKVSLAMG-SAKSLLNLINDILDFSKIEAGKLELESLDFDVRALLGELIESVA 650
Query: 459 PVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK 518
A +KG+E++LD + L+ V+GD +++QI+ NL+SNA+KFT +G I +RA +
Sbjct: 651 LQAQKKGLELILDVTQ---LEKPLVQGDPSRIRQIIINLISNAIKFTEQGEIIIRAWFSE 707
Query: 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
+N + F V+DTG GI
Sbjct: 708 V------------------------------------------DNKLRFHCSVEDTGIGI 725
Query: 579 PKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
P++K +F + QV GGTGLGL IV+ L LM GDI + + G+ F F
Sbjct: 726 PEDKADRLFAKFSQVDASTTRKYGGTGLGLAIVRQLCELMDGDIAVSSRFG--HGSQFEF 783
Query: 635 NVFLAIREASANDNNTQGE 653
V L + +NTQ E
Sbjct: 784 FVTL------IHGDNTQFE 796
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 14/138 (10%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPH 1052
KP R IL+ +D+ + + VA L+ LG T +E ENG A++L++S ++ +
Sbjct: 961 KPCR---ILLVEDNKVNQVVALSMLKKLGITHIEVAENGLLAIELLKSHQDECQ------ 1011
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMD 1111
++ ILMDC+MP M+GY T IR+ + I+A+TA+ + +K + AGM+
Sbjct: 1012 ---FELILMDCQMPEMDGYRTTELIRDGAAGESYQGVKILAMTANAMSGDREKCLNAGMN 1068
Query: 1112 VHLGKPLNRDHLMEAIKY 1129
+L KP++ + L E ++Y
Sbjct: 1069 DYLTKPISEEPLSEKLQY 1086
Score = 41.2 bits (95), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 10/161 (6%)
Query: 971 GEGSS-RYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACE 1029
G GS + T I ++ + A+ L+G KIL+ DD++ E LRH GA V
Sbjct: 776 GHGSQFEFFVTLIHGDNTQFEAAKIDLQGIKILLVDDNLSALTSLESQLRHWGADVSKAS 835
Query: 1030 NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP 1089
+G AL L + QRD +D L+D + M+G + ++ + + I
Sbjct: 836 SGIQALSLCEAEY--QRDKNV-----FDIALLDMTLRGMSGEQLGAALKNDMRFKA--IK 886
Query: 1090 IIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+I +T + + E G + KP+ L +A+ L
Sbjct: 887 LIMMTQMGTKGDGQFYAERGYSGYFPKPVTTKDLFDALTIL 927
>gi|218191539|gb|EEC73966.1| hypothetical protein OsI_08865 [Oryza sativa Indica Group]
Length = 985
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 162/338 (47%), Gaps = 48/338 (14%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM-- 412
K E QAE + KS A SH+IR + G+ G++++ G++L +
Sbjct: 356 KMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLL-----GTDLSMTQKDYAQ 410
Query: 413 --NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+C L+ L+N +LD +K+EAGK++L FD+ L++DV+ LF + K +E+ +
Sbjct: 411 TAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAV 470
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI-------- 522
D V K V GD + +QIL+NL+ NAVKFT GH+ VR C+ + S +
Sbjct: 471 FVCD-DVPKV--VIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVEANQVLNG 527
Query: 523 ----GNPSLSSSRHGFLQSISC--------------LFYKNKKARGD-LEAVNAAQRDEN 563
+ + ++ +G ++S L +K+ D LE + Q D +
Sbjct: 528 TMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCD 587
Query: 564 AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIE 619
+ ++DTG GIP + VF ++Q GGTG+GL I + L LMGG I
Sbjct: 588 CVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQIS 647
Query: 620 IVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELA 657
+ G+ F F+ A+ + S D ++ ++ L+
Sbjct: 648 FTSRPF--VGSTFTFS---AVLKRSCKDTSSDSKRSLS 680
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 28/151 (18%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK IL+ DD+ + RVA L+ GA V E+G+ A+ L L PH
Sbjct: 838 LIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDAVSL----------LQQPHC-- 885
Query: 1056 YDYILMDCEMPIMNGYEATRKIRE------EEKRN----------QVHIPIIALTAHISG 1099
+D MD +MP M+G+EATR+IR+ EE++ + H+P++A+TA +
Sbjct: 886 FDACFMDVQMPEMDGFEATRQIRQMEVKANEERKALDLMEGSTFVESHLPVLAMTADVIQ 945
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
++ I++GMD ++ KP + + L +A+ L
Sbjct: 946 ATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 976
>gi|418394962|ref|ZP_12969017.1| two-component system sensor protein [Burkholderia pseudomallei
354a]
gi|418558470|ref|ZP_13123026.1| two-component system sensor protein [Burkholderia pseudomallei
354e]
gi|385362593|gb|EIF68401.1| two-component system sensor protein [Burkholderia pseudomallei
354e]
gi|385374452|gb|EIF79331.1| two-component system sensor protein [Burkholderia pseudomallei
354a]
Length = 1014
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 515 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 572
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 573 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLS 632
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 633 SIGEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 671
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 672 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 708
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 709 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 742
Score = 43.5 bits (101), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 788 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 834
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 835 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 889
>gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1559
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 147/290 (50%), Gaps = 61/290 (21%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
A QAE S KS AN SH+IR A+ G+TGL+ +E SE + + + +
Sbjct: 885 ARHQAELASKTKSAFLANMSHEIRTPMNAVLGMTGLM----LETPLNSEQQDFIETIRIS 940
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPS 473
+ LL L+N ILD SK+EAG+M L DFD+ LE+V++L P A KG+E+ ++ P+
Sbjct: 941 GDALLSLINEILDLSKLEAGEMALETLDFDLSTCLEEVLELLAPSAHNKGLEIAALIYPN 1000
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
++++GD +L+QIL NL+SNA+KFTS G + VRA ++ SLSS+
Sbjct: 1001 VP-----TQLQGDAGRLRQILMNLISNAIKFTSNGEVVVRAELR--------SLSST--- 1044
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+ Y F + DTG GI E + +F + QV
Sbjct: 1045 -----TATIY-------------------------FAITDTGLGITFEDQCRLFTPFTQV 1074
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL I + LV LMGG+I + + +G+ F F V A
Sbjct: 1075 DASNTRKYGGTGLGLAICKQLVSLMGGEIGVESRLG--KGSKFWFEVTFA 1122
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 78/132 (59%), Gaps = 16/132 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D+++ ++VA L+ LG + + NG+ LQL+ +PYD I
Sbjct: 1304 RILLAEDNLVNQKVALKQLQSLGYSADVAGNGKEVLQLLEK-------------IPYDLI 1350
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQV---HIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
LMDC+MP+++G E T++I ++ + V +IA+TA+ E+ ++AGMD +L K
Sbjct: 1351 LMDCQMPVLDGLETTKEIHRWQESSFVSSRRPVVIAMTANAMKEDQQMCLDAGMDDYLSK 1410
Query: 1117 PLNRDHLMEAIK 1128
P+ ++ L A++
Sbjct: 1411 PVIKEKLAAALQ 1422
>gi|428214830|ref|YP_007087974.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428003211|gb|AFY84054.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1714
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 131/265 (49%), Gaps = 39/265 (14%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A AE + KS AN SH++R L I G L A E + +L +
Sbjct: 1215 AKDAAEAANRAKSAFLANMSHELRTPLTAILGFSRLLSAAANLTREQQEHLNIVRKSGEH 1274
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+ +LD SK+EAG M L E DFD+ LL DV ++F A KG+ + + S+ +V
Sbjct: 1275 LLDLIERVLDLSKIEAGTMTLSENDFDLYRLLIDVQNMFSLKAKEKGLTLTIY-SEINVP 1333
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
K+ ++ D VKL+QIL NLL+NA+KFT+EG + +R
Sbjct: 1334 KY--IRTDEVKLRQILINLLANAIKFTAEGQVCLRV------------------------ 1367
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG-- 596
+RG+ E+ +AA E + EV DTG GI + +F+ +VQ G
Sbjct: 1368 ---------SRGEQESDSAAVSGEGLSKICVEVSDTGIGIDSRYFEHLFKPFVQTGAGIY 1418
Query: 597 -EGGTGLGLGIVQSLVRLMGGDIEI 620
+ GTGLGL I +RLMGGDI +
Sbjct: 1419 SQEGTGLGLNISAQFIRLMGGDISV 1443
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 31/150 (20%)
Query: 987 GERSQAQKPLRGKKILVADD----SMMLRRVAEINLRHLGATVEACENGEAALQLVRSGL 1042
G Q Q+P G ++++ DD S +L ++ L G ++ NGE L++ + L
Sbjct: 1496 GRSLQPQQP--GYRMIIVDDHDYNSQLLMQI----LHPFGFELKRAVNGEEVLEMWQEFL 1549
Query: 1043 NDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP---IIALTAHISG 1099
PH+ I MD MP ++GYEATR+I+ +N IP I+A+TA SG
Sbjct: 1550 --------PHL-----IWMDMRMPKIDGYEATRRIK-AYCQNHPEIPVPAIVAITA--SG 1593
Query: 1100 EEADKT--IEAGMDVHLGKPLNRDHLMEAI 1127
DK+ + +G D + KP + EAI
Sbjct: 1594 WHFDKSEILASGCDGLIRKPFRDVDIFEAI 1623
>gi|217422964|ref|ZP_03454466.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 576]
gi|217393872|gb|EEC33892.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 576]
Length = 1014
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 139/272 (51%), Gaps = 51/272 (18%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQM 412
+K EA A++ + KS A SH+IR L I G +EL + P SE ++ L +
Sbjct: 517 LKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLHVV 574
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 575 ESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSSI 634
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 635 GEGVARHYA---GDPTRIRQVLSNLIGNAIKFTERGHISI-------------------- 671
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
D+ AA RD +A+E V+DTG GI ++ T+F+ Y Q
Sbjct: 672 ------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVYTQ 710
Query: 593 ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
+ GG+GLGL + Q LV +MGG IEI
Sbjct: 711 ADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 742
Score = 43.1 bits (100), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 788 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 834
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 835 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 889
>gi|167725871|ref|ZP_02409107.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei DM98]
Length = 927
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 428 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 485
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 486 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLS 545
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 546 SIGEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 584
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 585 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 621
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 622 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 655
Score = 43.1 bits (100), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 701 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 747
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 748 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 802
>gi|254189618|ref|ZP_04896128.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei Pasteur 52237]
gi|254264527|ref|ZP_04955392.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1710a]
gi|157937296|gb|EDO92966.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei Pasteur 52237]
gi|254215529|gb|EET04914.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1710a]
Length = 1014
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 515 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 572
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 573 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLS 632
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 633 SIGEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 671
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 672 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 708
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 709 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 742
Score = 43.1 bits (100), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 788 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 834
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 835 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 889
>gi|254195423|ref|ZP_04901851.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei S13]
gi|169652170|gb|EDS84863.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei S13]
Length = 1014
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 515 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 572
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 573 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLS 632
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 633 SIGEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 671
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 672 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 708
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 709 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 742
Score = 43.1 bits (100), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 788 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 834
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 835 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 889
>gi|167913353|ref|ZP_02500444.1| two-component system sensor protein [Burkholderia pseudomallei 112]
Length = 927
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 428 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 485
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 486 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLS 545
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 546 SIGEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 584
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 585 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 621
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 622 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 655
Score = 43.5 bits (101), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 701 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 747
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 748 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 802
>gi|76817983|ref|YP_336784.1| two-component system sensor protein [Burkholderia pseudomallei
1710b]
gi|76582456|gb|ABA51930.1| two-component system sensor protein [Burkholderia pseudomallei
1710b]
Length = 988
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 139/272 (51%), Gaps = 51/272 (18%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQM 412
+K EA A++ + KS A SH+IR L I G +EL + P SE ++ L +
Sbjct: 491 LKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLHVV 548
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 549 ESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLSSI 608
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 609 GEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI-------------------- 645
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
D+ AA RD +A+E V+DTG GI ++ T+F+ Y Q
Sbjct: 646 ------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVYTQ 684
Query: 593 ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
+ GG+GLGL + Q LV +MGG IEI
Sbjct: 685 ADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 716
Score = 43.1 bits (100), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 762 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 808
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 809 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 863
>gi|126444558|ref|YP_001061186.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 668]
gi|126224049|gb|ABN87554.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 668]
Length = 1014
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 515 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 572
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 573 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLS 632
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 633 SIGEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 671
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 672 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 708
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 709 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 742
Score = 43.1 bits (100), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 788 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 834
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 835 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 889
>gi|418542561|ref|ZP_13107982.1| two-component system sensor protein [Burkholderia pseudomallei
1258a]
gi|418549083|ref|ZP_13114163.1| two-component system sensor protein [Burkholderia pseudomallei
1258b]
gi|385355279|gb|EIF61493.1| two-component system sensor protein [Burkholderia pseudomallei
1258a]
gi|385356130|gb|EIF62268.1| two-component system sensor protein [Burkholderia pseudomallei
1258b]
Length = 1014
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 515 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 572
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 573 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLS 632
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 633 SIGEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 671
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 672 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 708
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 709 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 742
Score = 43.5 bits (101), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 788 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 834
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 835 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 889
>gi|167921296|ref|ZP_02508387.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei BCC215]
Length = 927
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 428 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 485
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 486 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLS 545
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 546 SIGEGVARHYA---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 584
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 585 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 621
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 622 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 655
Score = 43.1 bits (100), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 701 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 747
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 748 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 802
>gi|428319206|ref|YP_007117088.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428242886|gb|AFZ08672.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 997
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 56/317 (17%)
Query: 330 ISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGIT 389
+ ML ++ + + E+ L +A + AE + KS+ +N SH++R L I
Sbjct: 504 VEMLGYLIDISDRKQAELEL-------QQAKEAAETANRAKSMFLSNMSHELRTPLNAIL 556
Query: 390 GLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449
G +L + EL+ +L +N LL L+N ILD SK+E+GKM L DFD+ L
Sbjct: 557 GFTQLMSYDPVLTPELQKDLAIVNRSGTHLLELINDILDLSKIESGKMTLSLSDFDIKFL 616
Query: 450 LEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGH 509
L + ++ A KG++++ DP + ++ +F V D KL Q+L NLL NA+KFT +G
Sbjct: 617 LISLEEMLRMKAQLKGLKLIFDP-EPNLPQF--VHSDEKKLYQVLVNLLGNAIKFTHQGS 673
Query: 510 ISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTF 569
+++R V + Q D+ + F
Sbjct: 674 VTLR-----------------------------------------VRSEQSDQTSCRLYF 692
Query: 570 EVDDTGKGIPKEKRKTVFENYVQVKEGEG---GTGLGLGIVQSLVRLMGGDIEIVDKENG 626
EV+DTG GI + +++F+ +VQ + G GTGLGL I Q V+LMG I + N
Sbjct: 693 EVEDTGVGIAPAEVESLFKAFVQAEAGNKLNQGTGLGLAISQRYVQLMGSQIRVQSTLN- 751
Query: 627 ERGTCFRFNVFLAIREA 643
+G+ F F + + + +A
Sbjct: 752 -QGSIFYFELEVKLPQA 767
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D RR+ L +G V G AL L S +PH+ I
Sbjct: 790 RILVVEDVEENRRLLVKLLTSVGFEVRQATQGVEALSLWESW--------SPHL-----I 836
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MPI++GY AT++IRE + + IIALTA + +K + AG D + KP
Sbjct: 837 WMDLRMPIVDGYTATKRIREHPEGQET--VIIALTASAFEADREKVLMAGFDDFMSKPFQ 894
Query: 1120 RDHLMEAI 1127
+ +A+
Sbjct: 895 ESLVFDAL 902
>gi|167905032|ref|ZP_02492237.1| histidine kinase/response regulator fusion protein [Burkholderia
pseudomallei NCTC 13177]
Length = 922
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 423 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 480
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 481 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLS 540
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 541 SIGEGVARHYA---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 579
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 580 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 616
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 617 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 650
Score = 43.5 bits (101), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 696 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 742
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 743 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 797
>gi|428772854|ref|YP_007164642.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
stanieri PCC 7202]
gi|428687133|gb|AFZ46993.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
stanieri PCC 7202]
Length = 946
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 153/286 (53%), Gaps = 30/286 (10%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A ++AE + KS+ AN SH++R + I G ++ SE N+ +N N
Sbjct: 457 QAKERAEIANKTKSIFLANMSHELRTPMNAILGFSQIMMRSKKLDSEQLENISIINRSGN 516
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N++LD SK+EAGKM L ++ D+ L++++ DL + A K +++ +D +V
Sbjct: 517 YLLNLINNVLDLSKIEAGKMMLNLKNIDLYNLIDEIEDLLYLKAEEKNLQLTF-ITDENV 575
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ ++ D KL+Q+L N+++N +KFT EG +++ + I + S ++
Sbjct: 576 PRY--IRTDETKLRQVLINIINNGIKFTDEGGVNI------VTEIMSNDFSQTQ------ 621
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG- 596
NK + E +D + F V+D+G GI KE VF+ ++Q + G
Sbjct: 622 ------VNKSWNQEDE----CYQDYPYVRIKFTVEDSGIGIAKEDIDKVFDAFIQTEVGR 671
Query: 597 --EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
+ GTGLGL I + V+LMGGDI + + N +GT FRF++ I
Sbjct: 672 KSQEGTGLGLSISRKFVQLMGGDISL--RSNLGKGTVFRFDILAKI 715
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD + R + L+ LG ++ NGE A+ L PH+ I
Sbjct: 743 RILVVDDRPINRLLMVKLLQPLGFELKEAVNGEEAIALWEEW--------EPHL-----I 789
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MPIM+GY+AT+ I+ K N IIALTA + EE I AG D + KP
Sbjct: 790 WMDMRMPIMDGYQATQYIKSTLKGNAT--AIIALTASVLEEEKAIVISAGCDDFIRKPFR 847
Query: 1120 RDHLMEAI 1127
+ + +
Sbjct: 848 ESVIFDTM 855
>gi|428316967|ref|YP_007114849.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
gi|428240647|gb|AFZ06433.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
Length = 2171
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 140/267 (52%), Gaps = 35/267 (13%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A AE + KS AN SH++R L I G +L + +E + NL ++ +
Sbjct: 1666 QAKDAAEAANKAKSTFLANMSHELRTPLNAILGFSQLMNQDTNLLNEQKENLNIIHRSGD 1725
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +LD SKVEAG+M L E +F++ L ++ D+F A +G+++ + +V
Sbjct: 1726 HLLTLINQVLDLSKVEAGRMTLSETNFELHHFLGEIEDMFALKAKSQGLQLRF---ECAV 1782
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ D VKL+Q+L NL+ NA+KFT G +S+ VKK
Sbjct: 1783 DVPQYIRADEVKLRQLLINLIGNAIKFTPSGSVSL--VVKKSQ----------------- 1823
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
KN +++ ++E N Q + TFEV DTG G+ ++ + +F+ +VQ G+
Sbjct: 1824 ------KNAQSQAEIEITNNPQ----STTITFEVKDTGVGMKPDELEKLFQPFVQTASGQ 1873
Query: 598 G---GTGLGLGIVQSLVRLMGGDIEIV 621
GTGLGL I + VRLMGG+I ++
Sbjct: 1874 KVQQGTGLGLTISRQFVRLMGGEITVI 1900
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD R++ L+ LG V+ NG AL++ D +PH+ I
Sbjct: 1962 RILVVDDKDDNRQLLVKLLKPLGFEVQEASNGIEALEI--------WDSYSPHL-----I 2008
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+++GYEAT++I+ K +IALTA + EE + AG D + KP +
Sbjct: 2009 WMDMRMPVIDGYEATKRIKTTIKGQAT--AVIALTASVWEEEKAVILSAGCDDFVRKPFH 2066
Query: 1120 RDHLMEAI 1127
++ + + +
Sbjct: 2067 KEVIFDIM 2074
>gi|390950690|ref|YP_006414449.1| multi-sensor hybrid histidine kinase [Thiocystis violascens DSM
198]
gi|390427259|gb|AFL74324.1| multi-sensor hybrid histidine kinase [Thiocystis violascens DSM
198]
Length = 1162
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 144/291 (49%), Gaps = 55/291 (18%)
Query: 351 ASLIKQMEATQQ-AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
A L++++ A + AE+ S KS+ AN SH+IR + I G+ +L + S+ + L
Sbjct: 559 ARLLEELRAAKAVAEQASQAKSIFLANMSHEIRTPMNSIIGMTDLLLEQPLDDSQHKL-L 617
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
R ++ A L+G+LN ILD SK+E+G+M+L DFD +LL VVD+ A RKG+ +
Sbjct: 618 RSVSSAAQSLMGILNDILDVSKLESGRMELETIDFDPRQLLAQVVDMMAITAERKGLAIQ 677
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
L+ D ++ + V GD KL+QIL NL+ NA+KFT G SVR + PS
Sbjct: 678 LE-IDPAIPR--AVHGDPTKLRQILVNLMGNAIKFTERG--SVRLAL-APS--------- 722
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
E A E+ F V DTG GIP +FE
Sbjct: 723 --------------------------------EQAGEWLFSVKDTGIGIPAASLPRIFER 750
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ Q + GGTGLG I + +V MGG I + +E G+ FRF +
Sbjct: 751 FSQADQSTTRRYGGTGLGTAICKGIVDTMGGAIWVESEEAA--GSDFRFRL 799
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
PLR +LV DD + R + + +R ++ +G A++ G
Sbjct: 823 PLR---VLVVDDIELNRELVTLRMRQRHHEIQIAVDGAEAIERYLQG------------- 866
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
+D ILMD MP MNG++A R IR E+ HIPII LTA + + ++AG D +
Sbjct: 867 GFDLILMDAHMPTMNGFDAIRAIRAHEQDRGTHIPIIMLTASVLDSDRKMCLDAGADGFV 926
Query: 1115 GKPLNRDHLMEAI 1127
KP++ L + I
Sbjct: 927 PKPIDFPLLFDQI 939
>gi|167818207|ref|ZP_02449887.1| histidine kinase/response regulator fusion protein [Burkholderia
pseudomallei 91]
Length = 927
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 428 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 485
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 486 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLS 545
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 546 SIGEGVARHYA---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 584
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 585 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 621
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 622 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 655
Score = 43.1 bits (100), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 701 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 747
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 748 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 802
>gi|254417361|ref|ZP_05031103.1| GAF domain protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196175796|gb|EDX70818.1| GAF domain protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 1321
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 165/340 (48%), Gaps = 22/340 (6%)
Query: 330 ISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGIT 389
IS+LT V A ++ L A L EA A R KS AN SH++R L I
Sbjct: 772 ISLLTQVSNQLGVALQQAALMAQLKDAKEAADAANRA---KSEFLANMSHELRTPLNAIL 828
Query: 390 GLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449
G ++ ++ S + L + LL LLN +L+ SK+EAG++ L E FD+ L
Sbjct: 829 GFAQVMTRDSTLTSTQQEYLGIIARSGEHLLTLLNDVLEMSKIEAGRITLNETSFDLYRL 888
Query: 450 LEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGH 509
L+ + ++ A KG++++ + D V ++ V+ D KL+Q+L NLL NA+KFT EG
Sbjct: 889 LKSLEEMLQLKAASKGLQLIFN-CDSDVPQY--VRTDESKLRQVLINLLGNAIKFTGEGS 945
Query: 510 ISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME--- 566
+++ ++G S G ++ L ++ AR + +RD A
Sbjct: 946 VTLSVETCHGMSLGTSGNQSVEPGLTDKVTPL-HRRAMARLYTKPALFGERDIIAQSPIP 1004
Query: 567 -----FTFEVDDTGKGIPKEKRKTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDI 618
TF V+DTG GI + T+FE ++Q + G + GTGLGL I Q V+LMGG I
Sbjct: 1005 NPQSLITFAVEDTGPGIDSAELDTLFEAFIQTETGRKSQEGTGLGLPISQKFVQLMGGTI 1064
Query: 619 EIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAG 658
+ +GT FRF + + A A D Q K G
Sbjct: 1065 AVSSVLG--QGTTFRFTI--KVNPAQAADIEIQQSKRAIG 1100
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 23/139 (16%)
Query: 1000 KILVADDSMMLRRVAEINL-RHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+IL+ADD RV +NL +G V+ ENG+ A++ +S PH+
Sbjct: 1109 RILIADDKWE-SRVLLVNLIAPMGFEVQEAENGQQAVERCQSW--------QPHL----- 1154
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
I MD MP+M+GYEATR+IR + + Q + IIALTA + ++ + AG D + KP
Sbjct: 1155 IWMDMRMPVMDGYEATRRIR-QSLQGQATV-IIALTASVFDKQRSVVLSAGCDDFVSKPF 1212
Query: 1119 NRDHLME------AIKYLH 1131
+ + E ++YL+
Sbjct: 1213 QEEVIFEKMAQHLGVRYLY 1231
>gi|167741025|ref|ZP_02413799.1| histidine kinase/response regulator fusion protein [Burkholderia
pseudomallei 14]
Length = 927
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 428 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 485
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 486 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLS 545
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 546 SIGEGVARHYA---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 584
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 585 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 621
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 622 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 655
Score = 43.1 bits (100), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 701 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 747
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 748 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 802
>gi|392395357|ref|YP_006431959.1| PAS domain-containing protein [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526435|gb|AFM02166.1| PAS domain S-box [Desulfitobacterium dehalogenans ATCC 51507]
Length = 1007
Score = 131 bits (329), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 153/319 (47%), Gaps = 53/319 (16%)
Query: 332 MLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGL 391
MLT + + E + ++ +A ++AE + KS AN SH+IR + GI G+
Sbjct: 478 MLTLLRDITERKQIEQERKQAEVELQQAKEKAEAANRAKSEFLANMSHEIRTPINGIIGM 537
Query: 392 IELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLE 451
I+L + + + E NL+ CA L ++N ILD SK+EAGK+ + E +F++ E++E
Sbjct: 538 IDLTLLASLEDIQKE-NLKIAKNCAYSLFKIINDILDFSKIEAGKLTVEEIEFNLKEIIE 596
Query: 452 DVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHIS 511
++ P A RK +++V S ++ GD ++KQ+L+NLLSNA+KFT G +S
Sbjct: 597 QIIKTHSPEAERKDLDLVYTFSANLPDYYN---GDPERIKQVLNNLLSNALKFTERGEVS 653
Query: 512 VRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEV 571
+ + Q D++ EF F V
Sbjct: 654 L-----------------------------------------TIKRLQWDKDFSEFKFTV 672
Query: 572 DDTGKGIPKEKRKTVFENYVQVK----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGE 627
DTG GI KE++ +FE + QV GGTGLGL I + LV +MGG I + E
Sbjct: 673 KDTGIGIAKEEQINLFEEFNQVDGSITRKYGGTGLGLAISRKLVDMMGGKIWV----ESE 728
Query: 628 RGTCFRFNVFLAIREASAN 646
+G F V L ++ +
Sbjct: 729 KGKGSSFCVVLKLKHCDKD 747
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 14/125 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D + V L+ G V+ +GE AL L H YD I
Sbjct: 770 RILLAEDHAVNSVVITEMLKTQGHAVDVAMDGEEALALY-------------HKNSYDVI 816
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD ++P ++G E T++IRE E Q H PIIA+TA+ + + + AGMD ++ KP+
Sbjct: 817 LMDIQLPRLDGIEVTKRIRESEGV-QSHTPIIAITAYALKGDREGFLNAGMDEYIPKPVM 875
Query: 1120 RDHLM 1124
+ L+
Sbjct: 876 MEELI 880
>gi|254182943|ref|ZP_04889536.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1655]
gi|184213477|gb|EDU10520.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 1655]
Length = 1014
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 515 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 572
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 573 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLALLS 632
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 633 SIGEGVARHYA---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 671
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 672 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 708
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 709 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 742
Score = 43.1 bits (100), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 788 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 834
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 835 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 889
>gi|53721153|ref|YP_110138.1| histidine kinase/response regulator fusion protein [Burkholderia
pseudomallei K96243]
gi|52211567|emb|CAH37562.1| putative histidine kinase/response regulator fusion protein
[Burkholderia pseudomallei K96243]
Length = 1014
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 515 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 572
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 573 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLS 632
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 633 SIGEGVARHYA---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 671
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 672 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 708
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 709 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 742
Score = 43.1 bits (100), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 788 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 834
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 835 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 889
>gi|118790708|tpd|FAA00251.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 970
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 162/338 (47%), Gaps = 48/338 (14%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM-- 412
K E QAE + KS A SH+IR + G+ G++++ G++L +
Sbjct: 341 KMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLL-----GTDLSMTQKDYAQ 395
Query: 413 --NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+C L+ L+N +LD +K+EAGK++L FD+ L++DV+ LF + K +E+ +
Sbjct: 396 TAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAV 455
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI-------- 522
D V K V GD + +QIL+NL+ NAVKFT GH+ VR C+ + S +
Sbjct: 456 FVCD-DVPKV--VIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVEANQVLNG 512
Query: 523 ----GNPSLSSSRHGFLQSISC--------------LFYKNKKARGD-LEAVNAAQRDEN 563
+ + ++ +G ++S L +K+ D LE + Q D +
Sbjct: 513 TMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCD 572
Query: 564 AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIE 619
+ ++DTG GIP + VF ++Q GGTG+GL I + L LMGG I
Sbjct: 573 CVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQIS 632
Query: 620 IVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELA 657
+ G+ F F+ A+ + S D ++ ++ L+
Sbjct: 633 FTSRPF--VGSTFTFS---AVLKRSCKDTSSDSKRSLS 665
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 28/151 (18%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK IL+ DD+ + RVA L+ GA V E+G+ A+ L L PH
Sbjct: 823 LIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDAVSL----------LQQPHC-- 870
Query: 1056 YDYILMDCEMPIMNGYEATRKIRE------EEKRN----------QVHIPIIALTAHISG 1099
+D MD +MP M+G+EATR+IR+ EE++ + H+P++A+TA +
Sbjct: 871 FDACFMDVQMPEMDGFEATRQIRQMEVKANEERKALDLMEGSTFVESHLPVLAMTADVIQ 930
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
++ I++GMD ++ KP + + L +A+ L
Sbjct: 931 ATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 961
>gi|299771551|ref|YP_003733577.1| Sensor protein gacS [Acinetobacter oleivorans DR1]
gi|298701639|gb|ADI92204.1| Sensor protein gacS [Acinetobacter oleivorans DR1]
Length = 935
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 139/296 (46%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F I E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFVIDE 525
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL L++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNLIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|386863859|ref|YP_006276807.1| two-component system sensor protein [Burkholderia pseudomallei
1026b]
gi|418534917|ref|ZP_13100724.1| two-component system sensor protein [Burkholderia pseudomallei
1026a]
gi|385357344|gb|EIF63406.1| two-component system sensor protein [Burkholderia pseudomallei
1026a]
gi|385660987|gb|AFI68409.1| two-component system sensor protein [Burkholderia pseudomallei
1026b]
Length = 1014
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 515 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 572
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 573 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLS 632
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 633 SIGEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 671
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 672 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 708
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 709 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 742
Score = 43.1 bits (100), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 788 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 834
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 835 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 889
>gi|167848113|ref|ZP_02473621.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei B7210]
Length = 988
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 139/272 (51%), Gaps = 51/272 (18%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQM 412
+K EA A++ + KS A SH+IR L I G +EL + P SE ++ L +
Sbjct: 491 LKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLHVV 548
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 549 ESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSSI 608
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 609 GEGVARHYT---GDPTRIRQVLSNLIGNAIKFTERGHISI-------------------- 645
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
D+ AA RD +A+E V+DTG GI ++ T+F+ Y Q
Sbjct: 646 ------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVYTQ 684
Query: 593 ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
+ GG+GLGL + Q LV +MGG IEI
Sbjct: 685 ADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 716
Score = 43.1 bits (100), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 762 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 808
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 809 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 863
>gi|225569632|ref|ZP_03778657.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM
15053]
gi|225161102|gb|EEG73721.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM
15053]
Length = 870
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 166/361 (45%), Gaps = 65/361 (18%)
Query: 269 SGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGV 328
SG LS+G H Y V G +M + + + S+ +I+ + + +
Sbjct: 259 SGITLLSVGDHH--EYLYYVPVHGTDWYMVTSMAYETVNDQIVYLSRFIVIVGVGIFFII 316
Query: 329 LISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGI 388
L ++LTF R+ ++ L + ++AE + KS + SH+IR L GI
Sbjct: 317 LATVLTFFLLLRRSEKRSSELLRT------EKERAETANRAKSDFLSQMSHEIRTPLNGI 370
Query: 389 TGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGE 448
G++EL + L ++ + + LL L+N ILD SK+E+GK++L E FD+G
Sbjct: 371 MGMVELGKHHIEEPDRMRNCLDKITLSSAHLLSLINDILDMSKIESGKIELHPERFDLGR 430
Query: 449 LLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVK----GDRVKLKQILSNLLSNAVKF 504
LL + +F A K + D + + +++ GD ++L QIL+NLLSNA+KF
Sbjct: 431 LLRTLTTVFLVQAKNKQI-------DFQIFLYGELEEYLTGDALRLNQILTNLLSNALKF 483
Query: 505 T-SEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDEN 563
T + G++S+ V QRDEN
Sbjct: 484 TPAHGYVSLN-----------------------------------------VEELQRDEN 502
Query: 564 AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIE 619
+ FEV DTG+GI E + VFE + Q G GGTGLGL I ++ V++MGG +
Sbjct: 503 GIWLRFEVRDTGRGIAPENLERVFEAFTQENSGIVREYGGTGLGLPITKNFVQMMGGSVT 562
Query: 620 I 620
+
Sbjct: 563 V 563
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 10/137 (7%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
+Q Q L +IL A+D+ + +A L GA V +NG A++ R
Sbjct: 726 AQQQTMLDNVQILAAEDNEINLYIAVSLLTEAGAAVTTAQNGREAVE---------RFSE 776
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
AP +D ILMD +MP+M+GY ATR IR + + I IIA+TA+ E+ K +++G
Sbjct: 777 APEGF-FDLILMDIQMPVMDGYSATRAIRALPRADAQDIIIIAMTANSFREDVQKCLDSG 835
Query: 1110 MDVHLGKPLNRDHLMEA 1126
M+ H+ KP + + +A
Sbjct: 836 MNAHIAKPFVMNDITKA 852
>gi|134280682|ref|ZP_01767392.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 305]
gi|134247704|gb|EBA47788.1| response regulator/sensor histidine kinase [Burkholderia
pseudomallei 305]
Length = 1014
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P SE ++ L
Sbjct: 515 SELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSEQQSERLH 572
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL++ VD + P+A KG+ ++
Sbjct: 573 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLS 632
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G ++ GD +++Q+LSNL+ NA+KFT GHIS+
Sbjct: 633 SIGEGVARHYA---GDPTRIRQVLSNLIGNAIKFTERGHISI------------------ 671
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
D+ AA RD +A+E V+DTG GI ++ T+F+ Y
Sbjct: 672 --------------------DVHRAKAA-RDGSAIEIW--VNDTGIGIRPDRIATLFDVY 708
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q LV +MGG IEI
Sbjct: 709 TQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEI 742
Score = 43.1 bits (100), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 788 VLVAEDHPANRALLRDQLEALDHRVDVVENGREAL----------RAFGEHQ---YDIVL 834
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++GY R + + PI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 835 TDLGMPELDGYGFARF----ANKMRAGTPIVAMTAHATDEDYQRSKKVGIAEIVLKPLS 889
>gi|386346332|ref|YP_006044581.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
gi|339411299|gb|AEJ60864.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
Length = 1278
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 148/310 (47%), Gaps = 54/310 (17%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K EA ++AER KS AN SH+IR L I G +L + P + + L +
Sbjct: 783 KLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLL-ASSFPSGKEASYLDAIRS 841
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
+LL L+N ILD SK+EAGKM L D+ +E++ ++F KG+ +LD +
Sbjct: 842 SGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVENKGLSFILDYAP 901
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
V+ D ++L+Q+L NL+ NA+KFT +GH+ V
Sbjct: 902 ALP---PTVEIDELRLRQVLFNLIGNAIKFTEQGHVKV---------------------- 936
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+ RG L +E+ ++ T V+DTG GI E+R+ +F+++ Q
Sbjct: 937 ------------QVRGTLHT------EESKVDLTISVEDTGIGIRPEEREAIFQSFHQSS 978
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
+ GGTGLGL I + LV +MGG I V+ E G +GT F + I + + + T
Sbjct: 979 GQDSRKYGGTGLGLTISKRLVEMMGGTIS-VESEYG-KGTTFT----VRIPDLTCSAERT 1032
Query: 651 QGEKELAGGD 660
E GGD
Sbjct: 1033 ASATEETGGD 1042
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
GK ILV DD + R + + L GATV NG+ AL + P D
Sbjct: 1048 GKVILVVDDKELNRTLLKEYLAPTGATVIEASNGQEALSRAETH-------------PPD 1094
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
ILMD MP+M+G ++ + HIP+IALTA + E ++ ++ G L KP
Sbjct: 1095 LILMDIRMPVMDGLTFIKEYYRDPSHR--HIPVIALTASVLKERHEEFLKNGFVEVLTKP 1152
Query: 1118 LNRDHLMEAIK 1128
+ RD L ++
Sbjct: 1153 IQRDTLFSTLR 1163
>gi|421854961|ref|ZP_16287344.1| two-component sensor protein GacS [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|403189622|dbj|GAB73545.1| two-component sensor protein GacS [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 934
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 143/296 (48%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 273 ITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNEQNLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K +++
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDMAFYYG 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D V ++ + GD ++ KQIL+NL+SNA+KFT +G I VRA +++ G
Sbjct: 393 D-DVPQY--IVGDVLRFKQILTNLISNAIKFTPDGEIIVRARMEQD-------------G 436
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
Q CL + F V D+G G+ RK +FE++ Q
Sbjct: 437 MEQ---CLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + +
Sbjct: 469 DTSVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFGVED 524
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
RG IL DD + V E L L T +G+ AL ++ + + L +
Sbjct: 662 RGLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQEALDILHHQIERKEKL-------F 714
Query: 1057 DYILMDCEMPIMNGYEATRKIR--EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D I MD +MP+M+G + TR IR E +VH+PIIALTAH +E +K ++ GMD ++
Sbjct: 715 DLIFMDIQMPVMSGIDTTRAIRSLESTLEGEVHLPIIALTAHALADEKNKLLKVGMDDYV 774
Query: 1115 GKPLNRDHLMEAI 1127
KP+ D L+ +
Sbjct: 775 TKPIQIDQLIHIL 787
>gi|262377433|ref|ZP_06070656.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
gi|262307663|gb|EEY88803.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
Length = 935
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 141/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 273 ITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLLLRQGNLSNEQSLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K +++ +
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIDMAFYYA 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
DG + GD ++ KQIL+NL+SNA+KFT +G I VRA ++ G
Sbjct: 393 DGVP---KHIIGDALRFKQILTNLISNAIKFTPDGEIIVRARMEHD-------------G 436
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
Q C+ + F V D+G G+ RK +FE++ Q
Sbjct: 437 MDQ---CVLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + E
Sbjct: 469 DTSVTRQFGGTGLGLAISKQLVSLMHGQIGFEDNQERAPTEKGSTFWFTAQFLVDE 524
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 18/143 (12%)
Query: 977 YKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ 1036
+ Q + EE +G+ G IL DD + V E L L T +G+ A+
Sbjct: 650 FDQEQHEEFNGQ---------GLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQEAID 700
Query: 1037 LVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH--IPIIALT 1094
+++ ++ +D + MD +MP+M+G + TR IR E + H +PIIALT
Sbjct: 701 IIQRRYEQEQP-------AFDLVFMDIQMPVMSGIDTTRAIRSLESTFENHNRLPIIALT 753
Query: 1095 AHISGEEADKTIEAGMDVHLGKP 1117
AH +E K ++ GMD ++ KP
Sbjct: 754 AHALSDEKHKLLQNGMDDYVTKP 776
>gi|255320871|ref|ZP_05362045.1| sensor protein GacS [Acinetobacter radioresistens SK82]
gi|262380236|ref|ZP_06073391.1| sensor protein gacS [Acinetobacter radioresistens SH164]
gi|255302040|gb|EET81283.1| sensor protein GacS [Acinetobacter radioresistens SK82]
gi|262298430|gb|EEY86344.1| sensor protein gacS [Acinetobacter radioresistens SH164]
Length = 934
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 143/296 (48%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 273 ITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNEQNLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K +++
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDMAFYYG 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D V ++ + GD ++ KQIL+NL+SNA+KFT +G I VRA +++ G
Sbjct: 393 D-DVPQY--IVGDVLRFKQILTNLISNAIKFTPDGEIIVRARMEQD-------------G 436
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
Q CL + F V D+G G+ RK +FE++ Q
Sbjct: 437 MEQ---CLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + +
Sbjct: 469 DTSVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFGVED 524
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
RG IL DD + V E L L T +G+ AL ++ + + L +
Sbjct: 662 RGLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQEALDILHHQIERKEKL-------F 714
Query: 1057 DYILMDCEMPIMNGYEATRKIR--EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D I MD +MP+M+G + TR IR E +VH+PIIALTAH +E +K ++ GMD ++
Sbjct: 715 DLIFMDIQMPVMSGIDTTRAIRSLESTLEGEVHLPIIALTAHALADEKNKLLKVGMDDYV 774
Query: 1115 GKPLNRDHLMEAI 1127
KP+ D L+ +
Sbjct: 775 TKPIQIDQLIHIL 787
>gi|262280993|ref|ZP_06058776.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
gi|262257893|gb|EEY76628.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
Length = 935
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 139/296 (46%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFVVDE 525
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL L++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNLIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|63095199|gb|AAY32330.1| AHK1 [Phyllostachys praecox]
Length = 409
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 43/299 (14%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL----ETNLR 410
K E QAE + KS A SH+IR + G+ G++++ G++L + + +
Sbjct: 117 KMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLL-----GTDLTLTQKDHAQ 171
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+C L+ L+N +LD +K+EAGK++L FD+ L++DV+ LF + K +E+ +
Sbjct: 172 TAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAV 231
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPS---- 526
D V GD + +QIL+NL+ NAVKFT GH+ VR C+ + S + +
Sbjct: 232 FVCDDVP---EVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNVEDDQVLNG 288
Query: 527 --------LSSSRHGFLQSISC--------------LFYKNKKARGD-LEAVNAAQRDEN 563
+ S+ +G L ++S L +K++ D LE + Q D +
Sbjct: 289 TLNGKDGKIESTANGALNTLSGFQAADERNSWEYFKLLLSDKESLLDELEGEKSNQNDSD 348
Query: 564 AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDI 618
++ ++DTG GIP + VF ++Q GGTG+GL I + L LMGG I
Sbjct: 349 SVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 407
>gi|421464586|ref|ZP_15913276.1| GHKL domain protein [Acinetobacter radioresistens WC-A-157]
gi|400205339|gb|EJO36320.1| GHKL domain protein [Acinetobacter radioresistens WC-A-157]
Length = 934
Score = 130 bits (328), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 143/296 (48%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 273 ITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQDNLSNEQNLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K +++
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDMAFYYG 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D V ++ + GD ++ KQIL+NL+SNA+KFT +G I VRA +++ G
Sbjct: 393 D-DVPQY--IVGDVLRFKQILTNLISNAIKFTPDGEIIVRARMEQD-------------G 436
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
Q CL + F V D+G G+ RK +FE++ Q
Sbjct: 437 MEQ---CLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + +
Sbjct: 469 DTSVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTFWFTAMFGVED 524
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
RG IL DD + V E L L T +G+ AL ++ + + L +
Sbjct: 662 RGLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQEALDILHHQIERKEKL-------F 714
Query: 1057 DYILMDCEMPIMNGYEATRKIR--EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D I MD +MP+M+G + TR IR E +VH+PIIALTAH +E +K ++ GMD ++
Sbjct: 715 DLIFMDIQMPVMSGIDTTRAIRSLESTLEGEVHLPIIALTAHALADEKNKLLKVGMDDYV 774
Query: 1115 GKPLNRDHLMEAI 1127
KP+ D L+ +
Sbjct: 775 TKPIQIDQLIHIL 787
>gi|303327881|ref|ZP_07358321.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
3_1_syn3]
gi|302862242|gb|EFL85176.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
3_1_syn3]
Length = 976
Score = 130 bits (328), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 152/327 (46%), Gaps = 61/327 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+ A +QAE S KS A SH+IR + I G+ LC +L LR++
Sbjct: 310 LAAKEQAEEASRAKSDFLARMSHEIRTPMNAILGITYLCLQTTHENKQL-YYLRKILSAG 368
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSD 474
LLG++N ILD SK+EAGKM L E F + EL+E++ DL + K +EV+ +DP+
Sbjct: 369 RGLLGIINDILDVSKIEAGKMTLQNEAFALQELVENLSDLCGALVGGKNIEVLFHVDPN- 427
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
F V+GD ++L Q+L+NLL NAVKFT +G + +R
Sbjct: 428 ----VFVTVEGDLLRLTQVLTNLLGNAVKFTEKGRVVLR--------------------- 462
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ-- 592
+ R + + V DTG G+ +E+ +F+ + Q
Sbjct: 463 --------------------IEELGRGADTITLGISVSDTGIGLTEEELARLFKPFEQAD 502
Query: 593 --VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
+ GGTGLGL I Q VR+MGG++E V E G +G+ F F++ L R +N
Sbjct: 503 GSITRRYGGTGLGLVICQRFVRMMGGELE-VRSEPG-KGSAFSFSLTLPYRPVRHAWDNP 560
Query: 651 Q------GEKELAGGDSAAGDTQLQHM 671
E+ L D A T LQ +
Sbjct: 561 DPPDPAGAERLLVVDDCEAARTILQEV 587
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 18/140 (12%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
EDG SQ RG ++L+ +D+ + + VA + +G +V ENG A+ ++
Sbjct: 707 EDGALSQR----RGTRVLLVEDNEINQEVASSLMERMGMSVTLAENGLNAVNACKAKT-- 760
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEAD 1103
+D I MD +MP+M+G EA R++R +E + PIIA+TAH E+ +
Sbjct: 761 -----------FDIIFMDIQMPVMDGLEAARRLRAQEADDGAEPTPIIAMTAHAMREDRE 809
Query: 1104 KTIEAGMDVHLGKPLNRDHL 1123
K+ AGMD H+ KP++ D L
Sbjct: 810 KSRNAGMDDHITKPIDPDML 829
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 22/131 (16%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAAL-QLVRSGLNDQRDLGAPHI 1053
P +++LV DD R + + L H G V+A +G+ AL +LVR+ D
Sbjct: 565 PAGAERLLVVDDCEAARTILQEVLIHFGFRVDAVASGQEALDRLVRAARTDT-------- 616
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDV 1112
PY +L+D +MP MNG E I K IP ++ ++AH G EA + E G ++
Sbjct: 617 -PYSLVLLDWKMPGMNGMEVADNI---HKLPLESIPQLLMISAH--GLEAYR--EKGENL 668
Query: 1113 H----LGKPLN 1119
H L KP+N
Sbjct: 669 HFAGFLVKPVN 679
>gi|424743166|ref|ZP_18171479.1| GHKL domain protein [Acinetobacter baumannii WC-141]
gi|422943427|gb|EKU38443.1| GHKL domain protein [Acinetobacter baumannii WC-141]
Length = 935
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 139/296 (46%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFVVDE 525
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL L++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNLIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|392551218|ref|ZP_10298355.1| GGDEF domain protein [Pseudoalteromonas spongiae UST010723-006]
Length = 1380
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 155/326 (47%), Gaps = 68/326 (20%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q+AE + KS AN SH+IR + G+ G+++L ++ E + + A
Sbjct: 850 ALQKAETATKLKSEFLANMSHEIRTPMNGVIGMLQLLK-DSRLSDEQAHRVSIASSSAKS 908
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N ILD SK+EA +++L DFD+ LLE + + A K VEV+LD + SV
Sbjct: 909 LLTLINDILDFSKIEADRIELEYIDFDLRNLLEKLAESVALDAQLKDVEVILDINAISV- 967
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
S V D +++QIL+N+LSNAVKFT G I +RA + S + GF Q +
Sbjct: 968 --SHVNSDPGRIRQILTNILSNAVKFTESGQIVIRAEL----------CDSEKIGFSQ-L 1014
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
+C E+ DTG GI K+K ++F+ + Q
Sbjct: 1015 NC-----------------------------EIQDTGIGIAKDKVTSLFDAFSQGDASTT 1045
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN------------------V 636
GGTGLGL I + L L+ GD+ + K GE G+CF
Sbjct: 1046 RKYGGTGLGLSITRKLCNLLQGDVTVTSKL-GE-GSCFNVTCLVKNIAQPTKVNDGPLFA 1103
Query: 637 FLAIREASANDNNTQGEKELAGGDSA 662
FL + A AND N Q K+L G+SA
Sbjct: 1104 FLTMLIADANDTNCQVIKQLLEGESA 1129
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 75/130 (57%), Gaps = 10/130 (7%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ + + VA L++LG T + NG AL +++ + P Y I+
Sbjct: 1252 VLLVEDNPVNQMVALSVLKNLGVTADVASNGHDALAALKA-------MDKPS--DYAAII 1302
Query: 1061 MDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MDC+MP M+GYE T KI+ E ++ +IPIIA+TA+ + K + AGMD ++ KP+
Sbjct: 1303 MDCQMPEMDGYETTSKIKSGEAGKSAANIPIIAMTANAMQGDEQKCLAAGMDDYMTKPIE 1362
Query: 1120 RDHLMEAIKY 1129
++ + +K+
Sbjct: 1363 KETVYRKLKH 1372
>gi|359427982|ref|ZP_09219025.1| putative two-component hybrid sensor and regulator [Acinetobacter
sp. NBRC 100985]
gi|358236644|dbj|GAB00564.1| putative two-component hybrid sensor and regulator [Acinetobacter
sp. NBRC 100985]
Length = 936
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 140/296 (47%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + +KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 393 ENIP---QHVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDD-IG---------- 438
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 439 -----QCLLH-------------------------FSVQDSGIGLSGTDRKRLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D ++ ++G+ F F + E
Sbjct: 469 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQDRAPTDKGSTFWFTALFKVEE 524
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 9/135 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L T +G+ A+ +++ + ++ P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDIIQERIEQ-------NLPPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E + +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDTGMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAIKY 1129
KP+ + +++ + +
Sbjct: 774 TKPIQMEQIIQILTH 788
>gi|425744147|ref|ZP_18862207.1| GHKL domain protein [Acinetobacter baumannii WC-323]
gi|425491535|gb|EKU57816.1| GHKL domain protein [Acinetobacter baumannii WC-323]
Length = 936
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 139/296 (46%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + +KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 393 ENIP---QHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMED-DEIG---------- 438
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 439 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + E
Sbjct: 469 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTASFKVEE 524
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G +L DD + V E L L T +G+ A+ +++ + + +P P+
Sbjct: 661 QGLHVLAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDIIQERIEQK----SP---PF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E N + +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDNGMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAIKY 1129
KP+ + +++ + +
Sbjct: 774 TKPIQMEQIIQILTH 788
>gi|407700554|ref|YP_006825341.1| diguanylate cyclase [Alteromonas macleodii str. 'Black Sea 11']
gi|407249701|gb|AFT78886.1| GGDEF domain protein [Alteromonas macleodii str. 'Black Sea 11']
Length = 1395
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 144/294 (48%), Gaps = 62/294 (21%)
Query: 351 ASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR 410
AS +KQ A +QAE + KS AN SH+IR + G+ G++ L S L T
Sbjct: 834 ASDLKQ--ALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLL-----KKSNLTTEQY 886
Query: 411 Q-MNVC---ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV 466
Q +N+ AN LL L+N ILD SK+EA K++L DFDV L+E + +A KG+
Sbjct: 887 QRVNIASSSANSLLVLINDILDFSKIEADKLELESVDFDVRGLIESIAQSVAHLAQEKGL 946
Query: 467 EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPS 526
EVV+D S + SK+ D +++QIL+NLLSNAVKFT +G +SV A + PS N +
Sbjct: 947 EVVVDVSK---ISESKINSDPSRIQQILTNLLSNAVKFTEKGELSVTAEL-LPSDGKNSA 1002
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTV 586
L V DTG GIP K +
Sbjct: 1003 L---------------------------------------LHISVADTGIGIPASKLPHL 1023
Query: 587 FENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
F+ + QV GGTGLGL I + L +L+GGDI + E G RF+V
Sbjct: 1024 FDAFTQVDASTTRRYGGTGLGLSITKKLCQLLGGDISVTT----ELGNGSRFDV 1073
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 956 IMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAE 1015
+ P+A+ + N E + ++ E + E + L K++L+ +D+++ + VA
Sbjct: 1226 VTPSATHIQNKTNPHAELAMQH--IEAKPSQAEETNPASSLGKKRVLLVEDNVINQMVAT 1283
Query: 1016 INLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075
+ G V+ NG AL L++ ++Q Y+ I+MDC+MP M+G+EAT+
Sbjct: 1284 NVIESGGYEVDVANNGVEALDLLKRSKHEQ---------AYNAIVMDCQMPEMDGFEATK 1334
Query: 1076 KIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
IR N IPIIA+TA+ + D +EAGMD L KP+ D + ++
Sbjct: 1335 LIRYGAAGENYKTIPIIAMTANAMQGDKDMCMEAGMDDFLTKPIEHDKVTSTLQ 1388
>gi|345893544|ref|ZP_08844340.1| hypothetical protein HMPREF1022_03000 [Desulfovibrio sp.
6_1_46AFAA]
gi|345046103|gb|EGW49997.1| hypothetical protein HMPREF1022_03000 [Desulfovibrio sp.
6_1_46AFAA]
Length = 953
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 152/327 (46%), Gaps = 61/327 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+ A +QAE S KS A SH+IR + I G+ LC +L LR++
Sbjct: 287 LAAKEQAEEASRAKSDFLARMSHEIRTPMNAILGITYLCLQTTHENKQL-YYLRKILSAG 345
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSD 474
LLG++N ILD SK+EAGKM L E F + EL+E++ DL + K +EV+ +DP+
Sbjct: 346 RGLLGIINDILDVSKIEAGKMTLQNEAFALQELVENLSDLCGALVGGKNIEVLFHVDPN- 404
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
F V+GD ++L Q+L+NLL NAVKFT +G + +R
Sbjct: 405 ----VFVTVEGDLLRLTQVLTNLLGNAVKFTEKGRVVLR--------------------- 439
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ-- 592
+ R + + V DTG G+ +E+ +F+ + Q
Sbjct: 440 --------------------IEELGRGADTITLGISVSDTGIGLTEEELARLFKPFEQAD 479
Query: 593 --VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
+ GGTGLGL I Q VR+MGG++E V E G +G+ F F++ L R +N
Sbjct: 480 GSITRRYGGTGLGLVICQRFVRMMGGELE-VRSEPG-KGSAFSFSLTLPYRPVRHAWDNP 537
Query: 651 Q------GEKELAGGDSAAGDTQLQHM 671
E+ L D A T LQ +
Sbjct: 538 DPPDPAGAERLLVVDDCEAARTILQEV 564
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 18/140 (12%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
EDG SQ RG ++L+ +D+ + + VA + +G +V ENG A+ ++
Sbjct: 684 EDGALSQR----RGTRVLLVEDNEINQEVASSLMERMGMSVTLAENGLNAVNACKAK--- 736
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEAD 1103
+D I MD +MP+M+G EA R++R +E + PIIA+TAH E+ +
Sbjct: 737 ----------TFDIIFMDIQMPVMDGLEAARRLRAQEADDGAEPTPIIAMTAHAMREDRE 786
Query: 1104 KTIEAGMDVHLGKPLNRDHL 1123
K+ AGMD H+ KP++ D L
Sbjct: 787 KSRNAGMDDHITKPIDPDML 806
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 22/131 (16%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAAL-QLVRSGLNDQRDLGAPHI 1053
P +++LV DD R + + L H G V+A +G+ AL +LVR+ D
Sbjct: 542 PAGAERLLVVDDCEAARTILQEVLIHFGFRVDAVASGQEALDRLVRAARTDT-------- 593
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDV 1112
PY +L+D +MP MNG E I K IP ++ ++AH G EA + E G ++
Sbjct: 594 -PYSLVLLDWKMPGMNGMEVADNI---HKLPLESIPQLLMISAH--GLEAYR--EKGENL 645
Query: 1113 H----LGKPLN 1119
H L KP+N
Sbjct: 646 HFAGFLVKPVN 656
>gi|402758666|ref|ZP_10860922.1| barA [Acinetobacter sp. NCTC 7422]
Length = 936
Score = 130 bits (327), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 139/296 (46%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + +KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 393 ENIP---KHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMED-DEIG---------- 438
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 439 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + E
Sbjct: 469 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTASFKVEE 524
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G +L DD + V E L L T +G+ A+ +++ + + +P P+
Sbjct: 661 QGLHVLAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDIIQERIEQK----SP---PF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E N + +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDNGMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAIKY 1129
KP+ + +++ + +
Sbjct: 774 TKPIQMEQIIQILTH 788
>gi|386392260|ref|ZP_10077041.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385733138|gb|EIG53336.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 943
Score = 130 bits (327), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 148/309 (47%), Gaps = 60/309 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +QAE S KS AN SH+IR L+GI GL ++ + GP E+ NL + +
Sbjct: 434 ARRQAEAASRAKSDFLANMSHEIRTPLSGIIGLTQMTLSQ-GPRPEVRENLEMILDSSRS 492
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LLG++N ILD SK+EAGKM+ DFD+ E L+ + F + +KG+++ SV
Sbjct: 493 LLGIVNDILDFSKIEAGKMEFSSVDFDLREALDRTMKPFQFSSRQKGLKL-------SVR 545
Query: 479 KFSKV----KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
S V GD ++ Q++ NL+ NA+KFT +G ++V + +P G+P L
Sbjct: 546 IASDVPEVLNGDPDRIMQVVRNLVGNALKFTDQGEVAVEFRLLRP---GDPLL------- 595
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+ C V DTG GIP+++ +F+ + Q++
Sbjct: 596 ---VEC-----------------------------SVRDTGIGIPEDRLPDLFQVFTQLE 623
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
GGTGLGL I + LV +MGG I + + N G+ F F V L D
Sbjct: 624 ASRTKRFGGTGLGLAISRRLVEMMGGTIGVESRSN--HGSTFSFTVSLRPAREEQRDQAR 681
Query: 651 QGEKELAGG 659
E LAGG
Sbjct: 682 VEEVGLAGG 690
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 14/132 (10%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G ++L+A+D+ + R + L G V +G AL L+ G P D
Sbjct: 693 GLRVLLAEDNQVNRLFLKHFLVEAGCEVRLAGSGGEALALLAQG-------------PVD 739
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
+LMD +MP M+G EATR+IR+ E +P++ALTA+ + ++ + AG+D ++ K
Sbjct: 740 LVLMDIQMPEMDGTEATRRIRDGEVGEAARRLPVVALTAYSMKGDRERFLSAGLDDYVSK 799
Query: 1117 PLNRDHLMEAIK 1128
P++ D L ++
Sbjct: 800 PVDVDELFMVMR 811
>gi|375137100|ref|YP_004997750.1| GacS-like sensor kinase protein [Acinetobacter calcoaceticus
PHEA-2]
gi|325124545|gb|ADY84068.1| GacS-like sensor kinase protein [Acinetobacter calcoaceticus
PHEA-2]
Length = 935
Score = 130 bits (327), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 139/296 (46%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFVVDE 525
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL L++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVRTTKAISGQEALNLIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|293610389|ref|ZP_06692690.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427424185|ref|ZP_18914319.1| GHKL domain protein [Acinetobacter baumannii WC-136]
gi|292827621|gb|EFF85985.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425698925|gb|EKU68547.1| GHKL domain protein [Acinetobacter baumannii WC-136]
Length = 935
Score = 130 bits (327), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 139/296 (46%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 274 ITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLNNEQNLYLQTIR 333
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D +V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 394 DNIP---QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 439
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 440 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 469
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + E
Sbjct: 470 DASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFVVDE 525
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L +G+ AL L++ + DQ+ + P+
Sbjct: 661 QGLHILAVDDHLPNLIVLEALLGELNVRTTKVISGQEALNLIQERI-DQK------LKPF 713
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E ++ +PIIALTAH +E K ++ GM+ ++
Sbjct: 714 DLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYV 773
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 774 TKPIQMEQIIQIL 786
>gi|125974329|ref|YP_001038239.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC
27405]
gi|256003451|ref|ZP_05428441.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
2360]
gi|385779796|ref|YP_005688961.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
1313]
gi|419723943|ref|ZP_14251046.1| ATP-binding region ATPase domain protein [Clostridium thermocellum
AD2]
gi|419725975|ref|ZP_14253009.1| ATP-binding region ATPase domain protein [Clostridium thermocellum
YS]
gi|125714554|gb|ABN53046.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum ATCC
27405]
gi|255992475|gb|EEU02567.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
2360]
gi|316941476|gb|ADU75510.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
1313]
gi|380770751|gb|EIC04637.1| ATP-binding region ATPase domain protein [Clostridium thermocellum
YS]
gi|380780046|gb|EIC09741.1| ATP-binding region ATPase domain protein [Clostridium thermocellum
AD2]
Length = 932
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 159/321 (49%), Gaps = 61/321 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +A++ + KS A+ SH+IR + I G L + E + + + A +
Sbjct: 328 ARDEADKANRAKSEFLASMSHEIRTPINSIIGYQYLLKNSVLSPKQREY-VENIGLAAKN 386
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N ILD SK+EAG+M L E DF++ ++L +++ + A RKG+E+ + D V
Sbjct: 387 LLAIINQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRI-KVDEDVP 445
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+F +KGD +LKQ++ NL+SN +KFT EG+IS+R
Sbjct: 446 RF--LKGDITRLKQVVMNLVSNGIKFTHEGYISIR------------------------- 478
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
V +++E F V DTG GI E++K +F+ + Q
Sbjct: 479 ----------------VELVEKNEENACIKFSVTDTGIGISDEQKKLLFQAFTQGDASTS 522
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
GGTGLGL I + LV LM G+I V+ E G +G+ F F++ L I AS N+N
Sbjct: 523 RKYGGTGLGLAICKRLVELMKGEIN-VESEVG-KGSTFSFSLRLKI--ASCNENR----- 573
Query: 655 ELAGGDSAAGDTQLQHMNLTV 675
G S + DT+ Q+ N+ +
Sbjct: 574 ---NGKSKSVDTEEQYKNVKI 591
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 17/130 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K +LV D S+ L+ EI L ++G + ++GE A++ S Y+
Sbjct: 590 KILLVEDSSVNLQMTKEI-LENMGIDTDTAQSGEEAVKKAESN-------------EYEL 635
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
ILMD MP M+GYEATR+IR+ E+ + +PI+ALTA A K EAGM+ +L KPL
Sbjct: 636 ILMDIRMPGMDGYEATRRIRKLERGS---MPIVALTADAVEGVAQKAKEAGMNGYLTKPL 692
Query: 1119 NRDHLMEAIK 1128
+ L+E I+
Sbjct: 693 EPEKLLEVIR 702
>gi|334117721|ref|ZP_08491812.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333460830|gb|EGK89438.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 959
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 148/289 (51%), Gaps = 16/289 (5%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE + KS AN SH++R+ L I G +L E + N+ ++
Sbjct: 433 AKDKAEVANQAKSTFLANMSHELRSPLNAIMGFSQLMTRSQTLCPEHQENISIISSSGEH 492
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N++LD SK+E+G+ L + FD+ LL D+ D+F A K +++V D S V
Sbjct: 493 LLTLINNVLDLSKIESGRTTLNLKKFDLYRLLNDLEDMFELKADDKQLQLVFDRSP-EVP 551
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
++ V+ D VKL+QIL NLL+N++KFT EG ++VR + I + H +
Sbjct: 552 QY--VEADEVKLRQILINLLNNSLKFTHEGGVTVRVSKQSLGRIQQAEGENFAHSEVSPN 609
Query: 539 SCLFYKNKKARGDL----EAVNAAQRDENA----MEFTFEVDDTGKGIPKEKRKTVFENY 590
+ N L V A Q D++A FEV+DTG GI + +FE +
Sbjct: 610 TEFSASNGLKISQLSHSKNQVIATQNDDSASTSSFFLHFEVEDTGCGIATNELDALFEPF 669
Query: 591 VQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
VQ K G + GTGLGL I + V LMGG + + +GT F+F++
Sbjct: 670 VQTKTGKDSQEGTGLGLPISRKFVELMGGQMSVSSAVG--KGTNFKFDI 716
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 31/211 (14%)
Query: 933 DIMPNASVLLKTGNSSGEGP------RRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEED 986
D + V KTG S EG R + + ++ G+G++ ++ D
Sbjct: 663 DALFEPFVQTKTGKDSQEGTGLGLPISRKFVELMGGQMSVSSAVGKGTNFKFDIQVIAVD 722
Query: 987 GERSQAQKPLRG----------KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ 1036
++ KP R +IL+ DD ++ R++ L LG ++ NG+ A++
Sbjct: 723 AADIESPKPSRNIIALVPNQHTYRILIVDDKLLNRQLLIKLLYPLGFELKEATNGQEAIE 782
Query: 1037 LVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAH 1096
+ D PH+ I MD MP+M+GYEAT+ I+ K IIALTA
Sbjct: 783 I--------WDSWEPHL-----IWMDMRMPVMDGYEATQYIKGTIKGQAT--AIIALTAS 827
Query: 1097 ISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ EE + AG D + KP + +A+
Sbjct: 828 VLEEERAVILSAGCDAFMRKPFREADIFDAM 858
>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
Length = 684
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 153/298 (51%), Gaps = 49/298 (16%)
Query: 370 KSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSI 426
KS A SH+IR A+ G+TG++E ++A +ET +RQ LL +N +
Sbjct: 158 KSEFLATMSHEIRTPLNAVIGLTGILENTKLDAHQQDLVET-IRQ---SGETLLITINDV 213
Query: 427 LDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGSVLKFSKVK 484
LD +K+E+GK++L + F++ + LE VDLF P A++KG+E+ +DP S L
Sbjct: 214 LDFAKIESGKLELEFKPFNLRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTL-----V 268
Query: 485 GDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYK 544
GD +L+QIL NLLSNA+KFT G +SV V+ + N + + H C+
Sbjct: 269 GDVTRLRQILINLLSNAIKFTDVGEVSVSVKVEH-CYVTNSTQNQDSHT--SPTVCIL-- 323
Query: 545 NKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGT 600
F V DTG GIPK++ +F+ + Q+ GGT
Sbjct: 324 ------------------------FSVKDTGIGIPKDRFNRLFQRFSQLDSSTTRQYGGT 359
Query: 601 GLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAG 658
GLGL I + L +MGG+I VD GE G+ F F V L++ + ++ N + +LAG
Sbjct: 360 GLGLIISKQLSEMMGGEI-WVDSTLGE-GSTFSFCVVLSVDQDASEPNLITPQPQLAG 415
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 22/162 (13%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQK-PLRGKKILVADDSMMLRRVAEINLRHLGATVEACE 1029
G ++ K E G+ AQ+ PLR IL+A+D+++ ++V + L+ LG +
Sbjct: 535 GRQATAIKSQPASPESGDSPLAQQLPLR---ILLAEDNIVNQKVELLLLKRLGYQADLVS 591
Query: 1030 NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP 1089
NG+ L + YD ILMD +MP M+G ATR I + N P
Sbjct: 592 NGQEVLDAISRQ-------------SYDVILMDVQMPEMDGLTATRYICQ----NYSQRP 634
Query: 1090 -IIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
IIALTA+ E+ + ++AGMD ++ KP+ + L+ K +
Sbjct: 635 WIIALTANAMQEDRETCLKAGMDDYISKPIRQADLIRVFKMI 676
Score = 48.9 bits (115), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
VR ++ ++ L A + P D IL+D +MP M+GYE ++++ +EK IP+I L+A
Sbjct: 37 VRRVISGKQALNAVNTDPPDLILLDIKMPEMDGYEVCQRLKADEKT--AEIPVIFLSALD 94
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ K E G ++ KP + ++ +K
Sbjct: 95 EVWDKVKAFEVGGVDYITKPFQLEEVIARVK 125
>gi|298530456|ref|ZP_07017858.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509830|gb|EFI33734.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1033
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 147/292 (50%), Gaps = 53/292 (18%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I+ + A +QAE S KS AN SH+IR +AGI G +E+ V A E L +M
Sbjct: 507 IELIVAKEQAEAASKAKSEFLANMSHEIRTPMAGIMGALEM--VSARTDDEESRRLMKMT 564
Query: 414 V-CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
+ A L ++N ILD SKVEAGK+++ ++FD L + V+DL+ A K +E+ LD
Sbjct: 565 LESARSLQQIINDILDLSKVEAGKLEIEHQEFDPQSLFKRVMDLYSIQAGEKNIELQLDT 624
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+ G + GD+ +L+Q+L NL+SNAVKFTS+G + +R P ++S
Sbjct: 625 APGIPRRLC---GDQYRLEQVLRNLVSNAVKFTSQGRVILRV---------RPVQAAS-- 670
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
KAR FEV+DTG GI ++ +F+++ Q
Sbjct: 671 -------------GKAR-----------------LNFEVEDTGVGIKEDFLPRLFDSFTQ 700
Query: 593 VKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
G GTGLGL I LV++MGGDI+ G+ F F++ AI
Sbjct: 701 ADSTYGKKHQGTGLGLAISNRLVQMMGGDIQAQSIPGA--GSIFSFSLPFAI 750
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 23/144 (15%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R KILVA+D + + L+ G NG A+Q G +
Sbjct: 771 RQLKILVAEDVKLNQDYIRFVLKQKGHQAVIAGNGLEAVQAFVPG-------------QF 817
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEK----------RNQVHIPIIALTAHISGEEADKTI 1106
D +LMD +MP ++G E R+IRE+E+ R+ +PIIALTA+ EE + +
Sbjct: 818 DLVLMDIQMPDIDGLETARRIREKEESSGRTSDVGPRDSGRVPIIALTAYAMPEERQEFL 877
Query: 1107 EAGMDVHLGKPLNRDHLMEAIKYL 1130
++GMD ++ KP++ + L I+ L
Sbjct: 878 QSGMDGYVSKPVDPEDLFREIESL 901
>gi|336429690|ref|ZP_08609651.1| hypothetical protein HMPREF0994_05657 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336002161|gb|EGN32281.1| hypothetical protein HMPREF0994_05657 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 854
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 167/352 (47%), Gaps = 76/352 (21%)
Query: 291 AGVKSVYALAMPRKG-----LVSLVHRTSKRALILL----IVMTVGVLISMLT-----FV 336
G + VY +P +G + S+ + T ++ L + ++VG+ I + + F+
Sbjct: 259 VGGQHVYLYYVPIQGTDWYIVTSMAYETVNDQIVYLSQFMVAVSVGIFIILFSTVSAFFL 318
Query: 337 FKSARAAR-KEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELC 395
S R R +E+ L ME ++AE + KS + SH+IR L GI G++EL
Sbjct: 319 LLSHREKRNRELLL-------MEK-ERAESANRAKSNFLSQMSHEIRTPLNGIMGMVELG 370
Query: 396 YVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVD 455
+ L ++ + + LL L+N ILD SK+E+GK++L E FD+G LL +
Sbjct: 371 KNHLAEPERMRNCLDKITLSSTHLLSLINDILDMSKIESGKIELHPEQFDLGRLLRALTT 430
Query: 456 LFHPVAMRKGV--EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFT-SEGHISV 512
+FH A+ K + +V L G V ++ + GD ++L QIL+NLLSNAVKFT ++G +S+
Sbjct: 431 VFHVQAISKQIDFQVFLH---GEVEEY--LVGDALRLNQILTNLLSNAVKFTPAQGRVSL 485
Query: 513 RACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVD 572
V +RDE + F V
Sbjct: 486 N-----------------------------------------VEELRRDEYWIWLRFSVR 504
Query: 573 DTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEI 620
DTG+GI E +VFE + Q G GGTGLGL I ++ LMGG I +
Sbjct: 505 DTGRGIAPENIDSVFEAFTQENSGIVRQYGGTGLGLPITKNFAELMGGSISV 556
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G +++V +D+ + +A L+ GA V NG+ A+ GAP
Sbjct: 723 LAGAQVMVVEDNDINLEIAVALLQDAGAFVTTASNGQEAVAQFS---------GAPKGF- 772
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
Y ILMD +MP+M+G A + IR +++ IIA+TA+ E+ K +++GM+ H+G
Sbjct: 773 YHLILMDVQMPVMDGCSAAQAIRALPRQDAKSTVIIAMTANSFNEDVQKCLDSGMNAHIG 832
Query: 1116 KPLNRDHLME 1125
KP + ++E
Sbjct: 833 KPFVMNDIIE 842
>gi|310823304|ref|YP_003955662.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309396376|gb|ADO73835.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 1062
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 146/286 (51%), Gaps = 51/286 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + AE + K AN SH+IR + I G+ +L ++AG E + + + A
Sbjct: 382 QAKESAEEANRAKGEFLANMSHEIRTPMNAIIGMTQLA-LDAGSPEEKRDFIVKASRSAQ 440
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLG++N ILD SK++AG++++ + EL+ + D+F A KG+E++ D D S+
Sbjct: 441 SLLGIINDILDFSKIDAGRLEIETVPVSLNELISGLADVFASAAQDKGIELLFD-VDASL 499
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ + GD ++L+QIL NL+SNA+KFT G + VR V+K + + +
Sbjct: 500 P--AALAGDPLRLRQILQNLISNALKFTPAGEVVVR--VEKVAELAS------------G 543
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
++C F V DTG GI E+ +F+++ Q V
Sbjct: 544 VAC---------------------------RFSVRDTGIGIAAEQLPRLFQSFFQTDSSV 576
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL I + LV LMGG I VD + G+ G+CF F + LA
Sbjct: 577 TRKYGGTGLGLAISKRLVELMGGRIG-VDSQPGQ-GSCFWFELTLA 620
Score = 89.7 bits (221), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 96/170 (56%), Gaps = 17/170 (10%)
Query: 959 NASVLLKTGNSS-GEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEIN 1017
AS LL + G S++++ + E G + L+G +IL+ +D+ + + VA
Sbjct: 750 TASTLLDAVQRALGHPSTQFRAAPLRRE-GASQAVLRHLQGARILLVEDNRLNQEVALHF 808
Query: 1018 LRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077
LR G V+ +G A++ + G Y+ +LMDC+MP+M+GYEATR+I
Sbjct: 809 LRRAGLKVDVAAHGAEAIERLEQG-------------AYEAVLMDCQMPVMDGYEATRRI 855
Query: 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
R + + Q +PIIA+TA+ + ++++++GM+ HL KP++ +HL + +
Sbjct: 856 RSKAQFAQ--LPIIAMTANALEGDRERSLKSGMNDHLSKPIDVNHLYQTL 903
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 18/133 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV DD+ R + G A +G AL+ + G++ Q PY +
Sbjct: 641 RVLVVDDNASARHILSAMFASFGFVAHAVADGRQALEELARGMDGQ---------PYHLM 691
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAH----ISGEEADKTIEAGMDVHLG 1115
L+D MP ++G E +R++ +++ V +P + + + I ++A EAG+ ++
Sbjct: 692 LIDYHMPGLDGIETSRRLL--QRKESVPLPTVIMASMDERPIVVQQAQ---EAGIQAYVN 746
Query: 1116 KPLNRDHLMEAIK 1128
KP+ L++A++
Sbjct: 747 KPVTASTLLDAVQ 759
>gi|428227107|ref|YP_007111204.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427987008|gb|AFY68152.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 1170
Score = 130 bits (326), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 198/437 (45%), Gaps = 81/437 (18%)
Query: 222 TNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHY 281
T G V+V+ + + D SF I + R + +++V C TL Y
Sbjct: 369 TGRGSVVVESVQAPWPATLTDDPSFWEIPSDDARQGHVRTIEDVPC----ATLPPA---Y 421
Query: 282 KAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTS-KRA-------LILLIVMTVGVLISML 333
+A ++FEV V L + + + H+ S RA L+ + VG+ ++
Sbjct: 422 QALLARFEVRASLRVPILEGTQLWGLLIAHQCSTPRAWTPFEIDLLCQLANQVGLAVAQA 481
Query: 334 TFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRA---ALAGITG 390
+ + + ++ +L A ++AER S KS+ A SH+IR A+ G+TG
Sbjct: 482 RLLSQERQQRQQLAQQNLAL---EAARKEAERASQLKSIFLATMSHEIRTPMNAVLGMTG 538
Query: 391 LIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELL 450
L+ ++ E + + V + LL L+N ILD SK+EAG+M+L +F+ + L
Sbjct: 539 LL----LDTDLNPEQRDYVETIQVSGDALLTLINEILDFSKLEAGEMELEILEFNPKDAL 594
Query: 451 EDVVDLFHPVAMRKGVEVVL--DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG 508
E+V DL P A KG+E+ + DP L GD +L+Q+L NL+ NA+KFT++G
Sbjct: 595 EEVADLLAPSAHAKGLEMAVWSDPQLPPCL-----LGDVSRLRQVLINLVGNAIKFTAQG 649
Query: 509 HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT 568
+ +RA + + SA S +R
Sbjct: 650 EVVIRAALLRASA------SEAR-----------------------------------LE 668
Query: 569 FEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKE 624
F V DTG GI E +K +F+ + QV GGTGLGL I + L LMGG I + +
Sbjct: 669 FSVSDTGIGIQPEAQKRIFQPFSQVDASMTRLYGGTGLGLAICRQLTELMGGAIGV--ES 726
Query: 625 NGERGTCFRFNVFLAIR 641
ERG+ RF V L +
Sbjct: 727 EWERGS--RFWVRLGFQ 741
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 14/124 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KILV +DS + ++VA L LG + NG+ ALQ++ + +PYD +
Sbjct: 933 KILVVEDSAVNQKVALKQLERLGYAADVAANGQEALQMLET-------------IPYDIV 979
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMDC+MP+++GY ATR +R E Q H +IA+TA+ E+ D +EAGMD +L KP+
Sbjct: 980 LMDCQMPVLDGYSATRMLRSRED-GQRHTIVIAMTANAMTEDRDLCLEAGMDDYLCKPIR 1038
Query: 1120 RDHL 1123
D L
Sbjct: 1039 IDDL 1042
>gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 919
Score = 130 bits (326), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 145/286 (50%), Gaps = 56/286 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +QAE S KS AN SH+IR L+GI GL ++ + P E+ NL + +
Sbjct: 417 ARRQAEAASQAKSGFLANMSHEIRTPLSGIIGLTQMTLTQ-NPRPEIRENLELILDSSRS 475
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE--VVLDPSDGS 476
LLG++N ILD SK+EAGKM+ + DFD+ + L+ + F A +KG+ V +DP +
Sbjct: 476 LLGIVNDILDFSKIEAGKMEFVPVDFDLRDTLDRTMKSFQFSARQKGLTLGVRIDPQVPA 535
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++ Q++ NL+ NA+KFT +G + V + +P G+P L
Sbjct: 536 M-----VHGDPDRIMQVVRNLVGNALKFTDQGEVEVTLSLARP---GDPML--------- 578
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+SC V DTG GIP+++ +F+ + Q++
Sbjct: 579 -VSC-----------------------------SVRDTGIGIPEDRLHELFQVFSQLEST 608
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + LV +MGG I+ V+ G+ G+ F F V L
Sbjct: 609 RAKRYGGTGLGLAISRRLVEMMGGAID-VESVPGQ-GSTFTFTVSL 652
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 14/130 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+A+D+ + R + L G V +G AL+L+ P D +
Sbjct: 678 RVLLAEDNQVNRLFLKHFLAEAGCQVRLAGSGLQALELLCQE-------------PADLV 724
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMD +MP M+G EATR+IRE E + +P++ALTA+ + ++ + G+D ++ KP+
Sbjct: 725 LMDIQMPEMDGAEATRRIREGEAGDAARAMPVVALTAYSMKGDRERFLSVGLDDYVSKPV 784
Query: 1119 NRDHLMEAIK 1128
+ D L ++
Sbjct: 785 DVDELFMVMR 794
>gi|254457369|ref|ZP_05070797.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|373867994|ref|ZP_09604392.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|207086161|gb|EDZ63445.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|372470095|gb|EHP30299.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
Length = 733
Score = 130 bits (326), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 117/400 (29%), Positives = 192/400 (48%), Gaps = 73/400 (18%)
Query: 297 YALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQ 356
+ LA+ K V+ + + L L+I ++ +L+ F + + L L+
Sbjct: 164 FQLALAYKKKVN----SDYKYLQLIIYASIFILLMATLFYLFAVKIKNNINTLSRELV-- 217
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELE-TNLRQMNVC 415
EA + AE K++ A+ SHDIR + G+ G++ L S+L+ T Q ++
Sbjct: 218 -EAKEIAEESVKTKAIFLASMSHDIRTPMNGVIGMLGLLM-----NSKLDDTQKHQASLA 271
Query: 416 ---ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
A LL L+N ILD SKVEAGKM L DF++ + L D + A KGVE++L+
Sbjct: 272 KSSAKALLSLINDILDFSKVEAGKMDLEYIDFNIRDELGDFAEGIAFRAQEKGVELILEV 331
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+D ++ + +K D +++QILSN++ N++KFTSEG I+++A + + P+
Sbjct: 332 TD---IEQNMIKADPGRIRQILSNIVGNSIKFTSEGFIAIKAILD----VTEPT------ 378
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
AR E+ D+G GIP++K T+F+++ Q
Sbjct: 379 --------------DAR-----------------LIIEMSDSGIGIPEDKIDTLFDSFSQ 407
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI---REASA 645
V GGTGLGL IV+ L LM G +E+ K + +G+ F ++ + + R +
Sbjct: 408 VDASTTRKYGGTGLGLAIVEKLCELMNGKVEV--KSDFGKGSIFTIDISVELSQDRSLAI 465
Query: 646 NDNNTQGEKELAGGDSA----AGDTQLQHMNLTVKAPSPS 681
N+ + +K L DS A QLQH + V + S
Sbjct: 466 PHNSVKDKKILIIDDSKFSIEAMKKQLQHWGMKVYSAIDS 505
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 19/162 (11%)
Query: 963 LLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLG 1022
L K ++ + + + IEEE Q P+ IL+ +D++ + VA L G
Sbjct: 582 LFKALDTLFKDDNFFSSENIEEE-------QDPIFESNILLVEDNITNQLVANGMLEDFG 634
Query: 1023 ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK 1082
+ NG AL+++ S Y+ I MDC+MP ++GY AT+ IR E+
Sbjct: 635 LEADIANNGIEALEMLNSSSK-----------KYNLIFMDCQMPELDGYGATQAIRAEQA 683
Query: 1083 -RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHL 1123
+IPIIA+TA+ + +K AGM +L KP++++ L
Sbjct: 684 GERYTNIPIIAMTANAMQGDQEKCRSAGMSDYLAKPIDKELL 725
>gi|117618541|ref|YP_856712.1| hypothetical protein AHA_2188 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 1323
Score = 130 bits (326), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 136/287 (47%), Gaps = 52/287 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A Q+AE + KS AN SH+IR + I GL L + P + L +++ A
Sbjct: 700 QAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKRDT-PDHTQQDRLEKIDNAAQ 758
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK++AGKM L + DF + +L++V L A KG+ +++D D
Sbjct: 759 HLLTIINDILDLSKIDAGKMALEQSDFSLTAMLDNVSALMSEQARAKGLTIIVDIGDTP- 817
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ V GD +L+Q L N +NA+KFT +G +++R V P A G+L
Sbjct: 818 ---AWVHGDITRLRQALLNYAANAIKFTEQGSVTLRVRVDHPLA----------GGYL-- 862
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY----VQV 593
FEV+DTG GI E+ + +F+ + V
Sbjct: 863 -----------------------------LRFEVEDTGIGISPEQSEKLFQAFEQADVST 893
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I L LMGG++ + +G+CF F LA+
Sbjct: 894 TRKYGGTGLGLAITSRLATLMGGEVGVTSTLG--KGSCFWFTARLAV 938
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ +D+ + R V L + G +E NG+ AL+ V +D I
Sbjct: 964 RVLLVEDNAINREVVLELLNNSGLVIETAVNGQEALERVSQH-------------AFDLI 1010
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP+M+GY ATR IR QV PI+ALTA E+ AGM+ + KP+
Sbjct: 1011 LMDIQMPLMDGYSATRAIRALPGWEQV--PILALTASAFEEDRKACESAGMNDFIAKPVT 1068
Query: 1120 RDHLMEAIK 1128
L EA++
Sbjct: 1069 PAKLFEALQ 1077
>gi|109631214|gb|ABG35783.1| SHK279 [Striga asiatica]
Length = 984
Score = 130 bits (326), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 180/397 (45%), Gaps = 48/397 (12%)
Query: 248 LITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLV 307
++ N +P+ S +G +S+ + + F + Y + P
Sbjct: 269 IVVNVYDTTNSSDPLIMYGHNSQDGDMSLKHVSKLDFGDPFRKHEMICRYLMEAPTSW-- 326
Query: 308 SLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKS 367
H AL+ +I G LI + + A + + K E QAE
Sbjct: 327 ---HALQTAALVFMI----GFLIGYMAY-----SAVSHIVKVEDDFNKMQELKVQAEAAD 374
Query: 368 MNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGLL 423
+ KS A SH+IR + GI G+++L +EL + R C L+ L+
Sbjct: 375 VAKSQFLATVSHEIRTPMNGILGMLQLLL-----DTELSSTQRDFAQTAQGCGEALITLI 429
Query: 424 NSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV 483
N +LD +K+EAGK++L FD+ +L+DV+ LF + +KG+E+ + SD V
Sbjct: 430 NEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRQKGIELAVFVSDKVP---EIV 486
Query: 484 KGDRVKLKQILSNLLSNAVKFTSEGHISVR---ACVKKPSAIG---------NPSLSSSR 531
GD + +Q++ NL+ N+VKFT EGHI V+ A +KP+ + + S+
Sbjct: 487 VGDPGRFRQVIINLVGNSVKFTEEGHIFVQVHLAEQRKPTKDAKIETYSNGDSETTPKSQ 546
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDEN------AMEFTFEVDDTGKGIPKEKRKT 585
++S + + D E + RDEN ++ T V+DTG GIP++ +K
Sbjct: 547 SWSFNTLSGKQVADNCSSLDEEFLYDPTRDENNNAKSESVRLTVSVEDTGIGIPEQAQKR 606
Query: 586 VFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDI 618
VF ++Q GGTG+GL I + LV LMGG +
Sbjct: 607 VFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQM 643
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 25/152 (16%)
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
+++A+ LRGKKILV DD+++ RRVA L GA V +G AL L
Sbjct: 834 KAKAKGLLRGKKILVVDDNVVNRRVAAGALNKFGAEVRCVGSGHEALAC----------L 883
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV-------------HIPIIALTA 1095
PH +D MD +MP M+G+EATR IRE E + ++ H+PI+A+TA
Sbjct: 884 QIPH--DFDACFMDIQMPQMDGFEATRLIREMESKAKMGNNNKSDGIGEWRHMPILAMTA 941
Query: 1096 HISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ D+ ++ GMD ++ KP L +A+
Sbjct: 942 DVIHATLDECLKCGMDGYVPKPFKEKSLYQAV 973
>gi|411120737|ref|ZP_11393109.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
gi|410709406|gb|EKQ66921.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
Length = 1202
Score = 130 bits (326), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 150/285 (52%), Gaps = 44/285 (15%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + AE + KS AN SH++R L I G ++ E + L +N
Sbjct: 703 QAKEAAELSNRAKSEFLANMSHELRTPLNAILGFTQVVMRECVSNQVIYEYLEIINRSGE 762
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +L+ S++EAGK+ L DFD+ LL+++ D+ A K ++++ + D V
Sbjct: 763 HLLNLINDVLEMSRIEAGKVALNISDFDLHYLLKNLEDMLRLKADSKDLDLICE-IDPDV 821
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ V+GD KL+Q+L N+L NA+KFT+EG +++R
Sbjct: 822 PQY--VQGDEGKLRQVLINILGNAIKFTTEGGVALRV----------------------- 856
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFT---FEVDDTGKGIPKEKRKTVFENYVQV- 593
+++ ++ D N + D+ +E T FEV+DTG GI ++ +T+FE +VQ
Sbjct: 857 ------RSQVSQND----NGQEEDKGTVEETTLFFEVEDTGPGIAPDEVETIFEPFVQAR 906
Query: 594 KEG--EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+EG GTGLGL I ++ V+LMGGDI I N +GT +F V
Sbjct: 907 REGVLHEGTGLGLSISRTFVQLMGGDIRIHSIPN--QGTLVQFEV 949
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D R++ LR L V++ NG+ AL L +S PH+ I
Sbjct: 979 RILVVEDHWANRQLLCKLLRSLNFDVQSAVNGQQALYLWQSW--------HPHL-----I 1025
Query: 1060 LMDCEMPIMNGYEATRKIREEEKR-----NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
MD MP+M+GYEAT+KIR E ++ IIALTA E+ + +E G +
Sbjct: 1026 WMDIRMPVMDGYEATQKIRAMEADRGETGSEPKTVIIALTASAFEEDRARALEVGCTDFV 1085
Query: 1115 GKPLNRDHLMEAI 1127
GKP ++E I
Sbjct: 1086 GKPFREGVILEKI 1098
Score = 46.6 bits (109), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
VR N + L + P D IL+D +MP M+GY+ K++ E+ HIP+I L+
Sbjct: 37 VRLAANGEEALLDVQLTPPDLILLDIQMPGMDGYQVCEKLKSNEQTR--HIPVIFLSVAQ 94
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
++ K G + KP L+ I++
Sbjct: 95 ETDDKVKAFAIGAADFVTKPFATQELLARIEH 126
>gi|334117198|ref|ZP_08491290.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333462018|gb|EGK90623.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1314
Score = 130 bits (326), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 152/306 (49%), Gaps = 51/306 (16%)
Query: 353 LIKQMEATQQAERKSMNK-----------SLAFANASHDIRAALAGITGLIELCYVEAGP 401
IK + ++QAE K S AN SH++R+ L + G ++
Sbjct: 815 FIKDITDSKQAEIKMQQAKEAAEAANKAKSTFLANMSHELRSPLNAVIGFAQVLIRSQTL 874
Query: 402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
E + ++ + LL L+N +LD SK+EAG+ L + FD+ +L++D+ D+F A
Sbjct: 875 SQENQEDVGIILRSGEHLLALINQVLDLSKIEAGRTTLNAKSFDLYQLIDDLEDMFALKA 934
Query: 462 MRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
+KG++++ D D V + + D VKL+Q+L NLL+NA+KFTSEG +SV+
Sbjct: 935 EQKGLQLIFD-RDAEVPHY--ICTDEVKLRQVLINLLNNAIKFTSEGGVSVQV------- 984
Query: 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
K R ++ N+ + + FEV DTG GI E
Sbjct: 985 ------------------------KGERRNIHK-NSTDQLPSPYWLHFEVQDTGAGIAAE 1019
Query: 582 KRKTVFENYVQVKEGEG---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ +FE +VQ K G+ GTGLGL I + V+LMGG+I V E G +G F+F + +
Sbjct: 1020 EIHQLFEAFVQTKTGKDSHEGTGLGLAISRQFVQLMGGEI-TVSSEIG-KGALFQFYIQV 1077
Query: 639 AIREAS 644
+ EAS
Sbjct: 1078 HLVEAS 1083
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 116/292 (39%), Gaps = 52/292 (17%)
Query: 858 DDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHG------KASRDAGSSSYSKHPYRTGKSR 911
D+V L+ + L IK E GGV + G K S D S Y H
Sbjct: 956 DEVKLRQVLINLLNNAIKFTSE-GGVSVQVKGERRNIHKNSTDQLPSPYWLH-------- 1006
Query: 912 SKAGRHEIQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGP------RRDIMPNASVLLK 965
E+Q+ G+ + + A V KTG S EG R + +
Sbjct: 1007 -----FEVQDTGAGIAAEEIHQLF-EAFVQTKTGKDSHEGTGLGLAISRQFVQLMGGEIT 1060
Query: 966 TGNSSGEGS--SRYKQTE-IEEEDGERSQAQKPLRG-------KKILVADDSMMLRRVAE 1015
+ G+G+ Y Q +E D E ++Q+ + ++L+ DD + R++
Sbjct: 1061 VSSEIGKGALFQFYIQVHLVEASDIESKKSQRRVIALEPNQPSYRLLIVDDKPLNRQLLV 1120
Query: 1016 INLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075
L LG + NG+ A+ + PH+ I MD MP+M+GYEAT+
Sbjct: 1121 KLLSPLGFELREANNGKEAVDIFMEW--------EPHL-----IWMDMRMPVMDGYEATK 1167
Query: 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+I+ I+ALTA + EE + AG D + KP + + A+
Sbjct: 1168 QIKTTTGGQAT--AIVALTASVLEEERAVILSAGCDDFMRKPFREEDIFVAM 1217
>gi|345870773|ref|ZP_08822723.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343921242|gb|EGV31963.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1050
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 141/268 (52%), Gaps = 40/268 (14%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA +AE + KS ++ SH++R + I G+ E+ + G + +R +
Sbjct: 392 IEAKHRAEAATEAKSRFLSSMSHELRTPMNAIIGVGEVL-ADTELGRDQVHFIRILQSAG 450
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+DLL ++N ILD SK+E+G++ L DFD+ +L+E++ D+ A KG+++ L G
Sbjct: 451 DDLLNVINDILDISKIESGELTLESIDFDLSQLVEEICDMLAIRARTKGLDLAL--RLGR 508
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
L ++ GD +L+QIL NL+ NAVKFT +G++SV +++ S PS + G
Sbjct: 509 YLP-KRIVGDPHRLRQILINLIGNAVKFTEQGYVSVEVSLEETSV---PSAAEKPPG--- 561
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+ + F + DTG GIP++K++ +FE++ QV
Sbjct: 562 --------------------------SQVALVFSIRDTGIGIPEDKQEQIFESFTQVDSS 595
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEI 620
GGTGLGLGI + L LMGG IE+
Sbjct: 596 TTRQYGGTGLGLGISRRLATLMGGTIEV 623
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 20/156 (12%)
Query: 966 TGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATV 1025
T ++G G+S +Q E+DG + L +ILV +DS R + + L V
Sbjct: 782 TQIATGPGTSSGEQGATTEDDG------RSLPAARILVVEDSPHNRTLIQAFLARTPLRV 835
Query: 1026 EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK-RN 1084
+ ENG A++ + Y +LMD +MP+M+GYEAT IRE+E+
Sbjct: 836 DYAENGAEAIEKWNAN-------------AYTLVLMDMQMPVMDGYEATTAIREQERTEG 882
Query: 1085 QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
+ PI+ALTA + D + AG D HL KP+ +
Sbjct: 883 RAPTPIVALTAFALTADVDTCLAAGCDAHLAKPIRK 918
>gi|434405267|ref|YP_007148152.1| bacteriophytochrome (light-regulated signal transduction histidine
kinase) [Cylindrospermum stagnale PCC 7417]
gi|428259522|gb|AFZ25472.1| bacteriophytochrome (light-regulated signal transduction histidine
kinase) [Cylindrospermum stagnale PCC 7417]
Length = 998
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 142/292 (48%), Gaps = 44/292 (15%)
Query: 335 FVFKSARAARKEMHLCASLIKQM---EATQQAERKSMNKSLAFANASHDIRAALAGITGL 391
F + A+ R + L A QM EA QQAE + KS A SH++R L I G
Sbjct: 495 FAIEVAQEMRNNLMLAALEFSQMALQEAAQQAEIANRAKSHFLAKMSHELRTPLNAILGF 554
Query: 392 IELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLE 451
+L E + NL +N LL L++ +L+ SK+EAG++ L E FD+ L+
Sbjct: 555 TQLITRNGSLSPEDQENLDIINRSGEHLLILISDVLEMSKIEAGQLTLNESYFDLHRLIY 614
Query: 452 DVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHIS 511
+ ++ A KG+ +V + ++ +V +F V GD KL+QIL NL+ NAVKFT G+I+
Sbjct: 615 SIQEMLALKASDKGLSLVTEIAE-NVSQF--VCGDEGKLRQILINLIGNAVKFTIVGYIA 671
Query: 512 VRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEV 571
+R + PS SSS D+ + FE+
Sbjct: 672 LR--------VSYPSTSSS---------------------------LATDQGKIVVEFEL 696
Query: 572 DDTGKGIPKEKRKTVFENYVQVKEGE---GGTGLGLGIVQSLVRLMGGDIEI 620
+DTG GI + +FE +VQ K G GTGLGL I + RLMGGD+ +
Sbjct: 697 EDTGPGIAIDDLGLIFEAFVQAKSGRQFMQGTGLGLAISRQFARLMGGDVTV 748
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D R++ L+ +G V A ENG A+ + + PH +I
Sbjct: 793 RILVVEDVPENRQLIVKLLKSVGFEVRAAENGLEAIDICQEW--------EPH-----FI 839
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD +MP+M+G EAT++IR +R + IIALTA E+ +E G D + KP
Sbjct: 840 WMDIQMPVMDGREATQRIRAITQRKD--LKIIALTASAFEEDRKAILEIGCDDFVTKPFE 897
Query: 1120 RDHLMEAIKY 1129
L + + +
Sbjct: 898 ETILFDKMAH 907
>gi|281418385|ref|ZP_06249405.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
JW20]
gi|281409787|gb|EFB40045.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
JW20]
Length = 932
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 159/321 (49%), Gaps = 61/321 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +A++ + KS A+ SH+IR + I G L + E + + + A +
Sbjct: 328 ARDEADKANRAKSEFLASMSHEIRTPINSIIGYQYLLKNSVLSPKQREY-VENIGLAAKN 386
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N ILD SK+EAG+M L E DF++ ++L +++ + A RKG+E+ + D V
Sbjct: 387 LLAIINQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRI-KVDEDVP 445
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+F +KGD +LKQ++ NL+SN +KFT EG+IS+R
Sbjct: 446 RF--LKGDITRLKQVVMNLVSNGIKFTHEGYISIR------------------------- 478
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
V +++E F V DTG GI E++K +F+ + Q
Sbjct: 479 ----------------VELVEKNEENACIKFSVTDTGIGISDEQKKLLFQVFTQGDASTS 522
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
GGTGLGL I + LV LM G+I V+ E G +G+ F F++ L I AS N+N
Sbjct: 523 RKYGGTGLGLAICKRLVELMKGEIN-VESEVG-KGSTFSFSLRLKI--ASCNENR----- 573
Query: 655 ELAGGDSAAGDTQLQHMNLTV 675
G S + DT+ Q+ N+ +
Sbjct: 574 ---NGKSKSVDTEEQYKNVKI 591
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 17/130 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K +LV D S+ L+ EI L ++G + ++GE A++ S Y+
Sbjct: 590 KILLVEDSSVNLQMTKEI-LENMGIDTDTAQSGEEAVKKAESN-------------EYEL 635
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
ILMD MP M+GYEATR+IR+ E+ + +PI+ALTA A K EAGM+ +L KPL
Sbjct: 636 ILMDIRMPGMDGYEATRRIRKLERGS---MPIVALTADAVEGVAQKAKEAGMNGYLTKPL 692
Query: 1119 NRDHLMEAIK 1128
+ L+E I+
Sbjct: 693 EPEKLLEVIR 702
>gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 969
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 54/282 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +QAE + KS A SH+IR + + G+ E+ +E E + +
Sbjct: 588 AREQAESANRAKSDFLAAMSHEIRTPMNAVIGMGEVL-LETKLDQEQRHYIETLQHAGEA 646
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N+ILD SK+E+G+M+L+E+DFD+ +++ + LF ++G+E+ L+ + +
Sbjct: 647 LLDLINAILDLSKIESGRMELVEQDFDLHKMVVETCQLFQVQCRKQGIELNLNWEESNP- 705
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+ + GD+ +++QIL NL+ NAVKFT EG ++V ++SI
Sbjct: 706 --TYIHGDQARIRQILFNLIGNAVKFTDEGSVTVE---------------------IRSI 742
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG-- 596
E F++ D+G GIP +K++T+F+ + Q
Sbjct: 743 -----------------------EQEKTLLFKITDSGIGIPADKQETIFQKFSQADSSLS 779
Query: 597 --EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GG+GLGL I + LV M G I VD E G+ G+CF F +
Sbjct: 780 RRHGGSGLGLTICRHLVEHMKGRI-WVDSEEGQ-GSCFSFTL 819
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 1055 PYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
P+D I MD +MPIM+GY AT IR E+ R+ PI+ALTAH + ++++AG + H
Sbjct: 889 PFDLIFMDMQMPIMDGYAATAHIRALEQARHLTATPIVALTAHALQGDEQRSLQAGCNAH 948
Query: 1114 LGKPLNRDHLMEAIK 1128
L KP+ + HL+ AI+
Sbjct: 949 LTKPIRKAHLLAAIR 963
>gi|427708807|ref|YP_007051184.1| integral membrane sensor hybrid histidine kinase [Nostoc sp. PCC
7107]
gi|427361312|gb|AFY44034.1| integral membrane sensor hybrid histidine kinase [Nostoc sp. PCC
7107]
Length = 760
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 148/292 (50%), Gaps = 53/292 (18%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
A+ + KS AN SH++R+ L I G ++ G E + N+ + LL L
Sbjct: 296 ADSANQAKSTFIANMSHELRSPLNAILGFAQIMIRSQTLGREHQENVGIIYRSGEHLLTL 355
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N+ILD SK+EAGK L + FD+ LL+D+ D+FH A K ++++++ D ++++
Sbjct: 356 INNILDLSKIEAGKTTLNPKKFDLHRLLDDIHDMFHLKAEEKNLQLIME-YDPDLIRY-- 412
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLF 542
+ D VKL+Q+L NL++NA+KFT G IS+R + + N SS+ H
Sbjct: 413 ICTDEVKLRQVLINLINNAIKFTQAGGISIRVS----TLVAN---SSTLH---------- 455
Query: 543 YKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV---KEGEGG 599
FE++D+G GI +E+ +FE + Q K+ + G
Sbjct: 456 --------------------------FEIEDSGAGIAEEELGQIFEAFTQSATGKQAQEG 489
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
TGLGL I + V LMGG+I + K +GT F++ +A E A+D T
Sbjct: 490 TGLGLPISRQFVHLMGGNITV--KSVVGQGTILLFDIQVA--EVKASDITTH 537
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ DD R++ L LG + NG+ A+ + D PH+ I
Sbjct: 554 RILIVDDKPNNRQLLIKLLSPLGFEIHEAINGQEAINI--------WDSWEPHL-----I 600
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+M+GY AT++I+ K Q + IIALTA + EE I AG D + KP
Sbjct: 601 WMDMRMPVMDGYTATQQIKATTK-GQATV-IIALTASVLEEEKAVIISAGCDDFVRKPFR 658
Query: 1120 RDHLMEAI-KYL 1130
+ + A+ KY+
Sbjct: 659 EEEIFNAMNKYI 670
>gi|428203644|ref|YP_007082233.1| PAS domain-containing protein [Pleurocapsa sp. PCC 7327]
gi|427981076|gb|AFY78676.1| PAS domain S-box [Pleurocapsa sp. PCC 7327]
Length = 1092
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 149/290 (51%), Gaps = 38/290 (13%)
Query: 351 ASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR 410
A+L K +EA + A R KS +N SH++R L I G +L + + L
Sbjct: 594 AALQKAVEAAEVANRA---KSQFLSNMSHELRTPLNAILGFTQLLARSGSLDRKQQRYLD 650
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
++ LL L++ +L SK+EAG+ L E DFD LL+ + + A KG++++
Sbjct: 651 TIDRSGEHLLALIDDVLAISKIEAGRTTLNENDFDFYSLLDWLQQMLRLKAESKGLQLIF 710
Query: 471 D-PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
+ SD ++ D KL+Q+L NLL NA+KFT G + + A S IG+ S
Sbjct: 711 EIASDLP----QYIRTDESKLRQVLVNLLGNAIKFTQAGSVRLGAS----SVIGHRS--- 759
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
S + K+++ R +D+ + FEV+DTG GI E+ +++FE
Sbjct: 760 ---------SVIGTKDEEQRT---------KDKGLLTIHFEVEDTGPGIAAEELESLFEP 801
Query: 590 YVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+VQ + G + GTGLGL I Q VRLMGGD+ V+ GE GT F+F +
Sbjct: 802 FVQTQVGRRSQEGTGLGLPISQRFVRLMGGDL-TVESRLGE-GTIFQFGI 849
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 24/139 (17%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D R++ L +G V NG A+ L ++ +PH+ I
Sbjct: 880 RILIAEDKPENRQLLAELLAPVGFEVREAANGREAIALWQNW--------SPHL-----I 926
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD MP M+GYEAT++I+ ++ +P IIALTA E+ + G + + KP
Sbjct: 927 WMDLRMPEMDGYEATKQIKAAGEK----VPIIIALTASAFEEDRFAALSIGFNDFVRKPF 982
Query: 1119 NRDHLME------AIKYLH 1131
+ + ++YL+
Sbjct: 983 QTEVIFNKMAEHLGVRYLY 1001
>gi|406953060|gb|EKD82452.1| PAS/PAC sensor hybrid histidine kinase, partial [uncultured
bacterium]
Length = 483
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 154/322 (47%), Gaps = 61/322 (18%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ----MNVCAN 417
+A++ S KS AN SH+IR + GI G++EL + L+ R+ + +
Sbjct: 4 RAQQASQAKSEFLANMSHEIRTPMNGILGMLELLM-----ATSLDHRQREFAGLIYRSSQ 58
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLG+LN++LD SK+EAGK+ L E ++ LLE+VV L P+A +K +E++L +
Sbjct: 59 SLLGILNAVLDLSKIEAGKIVLERESINLRRLLEEVVGLMQPLAEKKKIEIILKYPPAAP 118
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ D +L+QIL NLLSNAVKFT EG +S
Sbjct: 119 ---EQIITDGGRLRQILINLLSNAVKFTEEGFVS-------------------------- 149
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
LE D + F F V DTG G+ E ++ VFE + Q +
Sbjct: 150 --------------LEIATTTCEDNKSGVFKFSVKDTGIGMSTEHQELVFEKFSQADSSI 195
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN---DNNT 650
GGTGLGL I Q L+++MGG+I + + GT RF++ + + S +
Sbjct: 196 TRRFGGTGLGLTICQELIKIMGGEITLESAQG--LGTKVRFSLKFELCQDSQPAQIEFPK 253
Query: 651 QGEKELAGGDSAAGDTQLQHMN 672
Q +AG +S DT + +N
Sbjct: 254 QLRTYIAGVNSPVVDTVCEIIN 275
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 15/98 (15%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G K+LV +D+ + + VA+ L LG TV +G AL+ + +Q D +D
Sbjct: 401 GFKVLVVEDNDINQEVAKGILEMLGCTVTLAGSGAIALEYL-----NQID--------FD 447
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA 1095
+L+DC+MP M+G+E ++IR EEK +P+IA+TA
Sbjct: 448 LVLLDCQMPEMDGFEVVKRIRSEEKHKD--LPVIAMTA 483
>gi|350553534|ref|ZP_08922705.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodospira sibirica
ATCC 700588]
gi|349790355|gb|EGZ44269.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodospira sibirica
ATCC 700588]
Length = 1017
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 142/287 (49%), Gaps = 45/287 (15%)
Query: 353 LIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM 412
L+ E T +A+ + KS AN SH+IR L GI G ++ + ++ ++ +
Sbjct: 544 LLHANEMTTKADTANHAKSAFLANMSHEIRTPLNGIIGFAQILSADQALNTKQRQQVQTI 603
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
LLGL+N ILD SK+EAG+++L + F + +LL D+ LF KG+ ++
Sbjct: 604 ARSGQHLLGLINDILDLSKIEAGRLKLDPKPFVLNDLLRDMQTLFAARCQDKGLYFHIEC 663
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+ + +F+ D KL+QIL NLLSNAVKFT G +++R ++ +
Sbjct: 664 APDTPQRFN---NDLAKLRQILINLLSNAVKFTDSGGVTLRVWMQAHA------------ 708
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI-PKEKRKTVFENYV 591
AAQ D FEV DTG GI P E+ +FE +
Sbjct: 709 ---------------------GAEAAQLD----ALYFEVRDTGIGIPPHEQGDCLFEPFY 743
Query: 592 QVKE--GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
Q + G+GLGL I Q LV L+GG+I++ + + +G+CFRF +
Sbjct: 744 QAHQLPDVSGSGLGLPISQRLVALLGGEIQL--ESHPAQGSCFRFYI 788
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K+L+ DD R V L +G V +AC EA L P D
Sbjct: 819 KLLIVDDKADNRDVLLELLEPVGFQVLQACNGKEAVTAFA---------LHRP-----DA 864
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
ILMD MP M+GY+AT IR + Q PII TA + + G D L KP
Sbjct: 865 ILMDLRMPEMDGYQATLHIRASPQGQQT--PIIITTASALSSDRRRIETLGADACLFKP 921
>gi|440679909|ref|YP_007154704.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428677028|gb|AFZ55794.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1543
Score = 129 bits (325), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 137/284 (48%), Gaps = 61/284 (21%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
A QAE S+ KS AN SH+IR A+ G+TGL+ +E E + + + +
Sbjct: 873 ARHQAELASLAKSAFLANMSHEIRTPMNAVLGMTGLL----LETALNREQQDFVETIRIS 928
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
+ LL L+N ILD SK+EAG+M+L DFD+ +E+V+DL P A KG+E+ G
Sbjct: 929 GDALLSLINEILDLSKLEAGEMELEHLDFDLSSCIEEVLDLLAPQAHHKGLEI------G 982
Query: 476 SVLKFS---KVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
++++ +++GD +L+QIL NL+ NA+KFTSEG + V+ + +A
Sbjct: 983 ALIRRKVPIQLQGDASRLRQILMNLIGNAIKFTSEGEVVVQVELLSETA----------- 1031
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
F + DTG GI E + +F+ + Q
Sbjct: 1032 ------------------------------TTATIKFSITDTGIGITSEDQHKLFQAFSQ 1061
Query: 593 VKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
V GGTGLGL I + LV LMGG+I + + CF
Sbjct: 1062 VDASITRQYGGTGLGLAICRQLVNLMGGEIGVTSEIGQGSKFCF 1105
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 22/136 (16%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+A+D+++ ++VA L+ LG + NGE L L+ + +PYD I
Sbjct: 1286 RVLLAEDNLVNQKVALKQLQTLGYIADTVSNGEEVLHLLET-------------VPYDLI 1332
Query: 1060 LMDCEMPIMNGYEATRKIREE------EKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
LMDC+MP+++G + TR IR +R V IIA+TA+ E+ + AGM+ +
Sbjct: 1333 LMDCQMPVLDGLQTTRAIRNWPDSHFLRRRQPV---IIAMTANAMKEDEQTCLNAGMNGY 1389
Query: 1114 LGKPLNRDHLMEAIKY 1129
+ KP+ ++ L ++Y
Sbjct: 1390 VSKPVVKEKLANILEY 1405
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
PYD L+D +MP ++G +I+ + H+P+I LT+ +E K ++ G +L
Sbjct: 1176 PYDIALVDMQMPTVDGLTLGVQIKANDAI--AHVPLIMLTSTNQRDEVQKALKIGFAGYL 1233
Query: 1115 GKPLNRDHLMEAI 1127
KP+ L + I
Sbjct: 1234 VKPVKPSRLFDTI 1246
>gi|153868900|ref|ZP_01998629.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
gi|152074529|gb|EDN71374.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
Length = 934
Score = 129 bits (325), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 152/312 (48%), Gaps = 44/312 (14%)
Query: 340 ARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEA 399
+ A++ L + +A + AE + KSL AN SH++R L I G ++ +
Sbjct: 436 SEVAKRTYWLKEKTTQLEQAKEIAEAANQAKSLFLANMSHELRTPLNAILGFAQIMHRSQ 495
Query: 400 GPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHP 459
E + N+ +N LL L+N +LD SK+EAGK+ L E + D+ LL++V DLF+
Sbjct: 496 TLSQEHQENVNVINRSGEYLLSLINDVLDMSKIEAGKITLDETNIDLYRLLDEVHDLFYL 555
Query: 460 VAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
A K +++ ++ D +V ++ G KL+Q+L NLLSNA+KFT EG I
Sbjct: 556 RAESKQLQLDIE-RDNNVPRYLYTDGK--KLRQVLINLLSNALKFTQEGGI--------- 603
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
H ++ I+ K LE F+V DTG GI
Sbjct: 604 ------------HLYINDITPPLSKETMTEVILE---------------FQVRDTGPGIA 636
Query: 580 KEKRKTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ + +FE + Q G + GTGLGL I + V+LMGGDI + K GE GT F F++
Sbjct: 637 ENEMDKLFEAFTQTATGIASQEGTGLGLPISRKFVQLMGGDISVQSK-VGE-GTTFTFSI 694
Query: 637 FLAIREASANDN 648
I A+ D+
Sbjct: 695 HTQIANAADFDS 706
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 15/126 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ DD R++ L G ++ NG+ A+++ + PH +I
Sbjct: 725 RILIVDDKKDNRQLLIKLLNPFGFELQEVTNGQEAIEMAENW--------QPH-----FI 771
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+++G +AT++I+ K + I I+ALTA EE ++ + AG D L KP
Sbjct: 772 WMDIRMPVLDGLQATQQIKASYKGKE--IVIVALTASSQDEEREQILSAGCDDFLRKPFR 829
Query: 1120 RDHLME 1125
+ E
Sbjct: 830 EFDIFE 835
>gi|242278251|ref|YP_002990380.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
gi|242121145|gb|ACS78841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
Length = 542
Score = 129 bits (325), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 137/269 (50%), Gaps = 50/269 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC- 415
++A +QAE S KS AN SH+IR L G+ G+++L +++ P E + ++ V
Sbjct: 160 IQAKEQAESASRAKSEFLANMSHEIRTPLNGVLGMLQL--LKSAPEKEKQLEYIELAVTG 217
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
L LL+ ILD S+VEAGK+ + FD+ EL++++ DL+ P A +KG+++ L
Sbjct: 218 VKRLTTLLSDILDLSRVEAGKLAVDPAPFDLLELMQNLTDLYRPSAQQKGLKLNLSLHPT 277
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ +K+ GD +L+Q+L+N++SNA+KFT++G I V + G +
Sbjct: 278 TI---TKLTGDSSRLQQVLTNIISNAIKFTNDGIIKVETYPLPHTTAGTTKI-------- 326
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
F V DTG GIP K + +F ++Q+ E
Sbjct: 327 --------------------------------LFSVSDTGPGIPDSKMEELFSPFIQLSE 354
Query: 596 G----EGGTGLGLGIVQSLVRLMGGDIEI 620
G G GLGL I + LV LMGG+I I
Sbjct: 355 GYQRTHQGAGLGLSICKQLVELMGGNISI 383
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 14/130 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+L+ +D + R A+ + G V A ENG+ A V + D+ + +
Sbjct: 423 KVLLVEDEAINRMAAKRQMELAGCEVTAVENGKLA---VEAAAKDR----------FHIV 469
Query: 1060 LMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+MD +MPIM+G AT+ IR E +IPIIA+TA+ + +K + +GM+ +L KP+
Sbjct: 470 MMDIQMPIMDGISATQAIRMGEAGPENKNIPIIAMTAYAMKGDREKFLNSGMNDYLAKPI 529
Query: 1119 NRDHLMEAIK 1128
+L++ ++
Sbjct: 530 ENKNLLKMLE 539
>gi|254506216|ref|ZP_05118360.1| PAS fold family protein [Vibrio parahaemolyticus 16]
gi|219551034|gb|EED28015.1| PAS fold family protein [Vibrio parahaemolyticus 16]
Length = 1319
Score = 129 bits (324), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 139/295 (47%), Gaps = 53/295 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY-VEAGPGSELETNLRQMNVCA 416
EA + A+ S K AN SH+IR + I G+ L E P + L ++N A
Sbjct: 596 EAKELADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQK--KYLTRINESA 653
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+LLG++N ILD SK+EAGK+ + DF + E+ +++V++ A KGVE +LD
Sbjct: 654 KNLLGIINDILDFSKIEAGKLTVESIDFSLDEVFDNLVNVVSYKAHEKGVEFLLDIDPKV 713
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ GD ++L Q+L NL SN+VKFT +G I V A V+
Sbjct: 714 PIGLV---GDPLRLGQVLVNLCSNSVKFTEKGEIVVSALVE------------------- 751
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
Q DEN F V DTG GI KEK + +F + Q
Sbjct: 752 ----------------------QLDENRATIRFSVKDTGIGIAKEKIQHLFRAFSQADSS 789
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
+ GGTGLGL I + LV LMGG++ + E G+ F F + ++EA D
Sbjct: 790 ITRQFGGTGLGLSISKQLVELMGGELVVSSSEG--TGSVFSFTIDCGLQEAKMRD 842
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+LMD +MP+M+G A ++IR++++ + +PI+A+TA+ + ++ I AGM+ H+ KP+
Sbjct: 1039 VLMDMQMPVMDGITACQEIRKKDEWQE--LPIVAMTANAMQSDVERCINAGMNGHIAKPI 1096
Query: 1119 NRDHLMEAIK 1128
N +L + ++
Sbjct: 1097 NVANLYQTLQ 1106
Score = 41.2 bits (95), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
S+ L GK+ L+ DD+ R + L + +A N AL ++
Sbjct: 844 SEPVSALAGKRALIVDDNDSARSILRTLLTAMHFDAKAVSNAYEALDELKER-------- 895
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
YD + +D MP MNG E +K +E R H + +TA+ G E T ++
Sbjct: 896 -----AYDMLFVDWTMPGMNGLELLQKAHDE--RLLPHCKVFLVTAY--GRELSLTEQSS 946
Query: 1110 --MDVHLGKPLNRDHLMEAI 1127
+D + KP+N +L++A+
Sbjct: 947 KLIDALIVKPVNPSNLLDAV 966
>gi|370988691|dbj|BAL43559.1| cytokinin receptor histidine protein kinase [Petunia x hybrida]
Length = 985
Score = 129 bits (324), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 109/359 (30%), Positives = 167/359 (46%), Gaps = 72/359 (20%)
Query: 321 LIVMTVGVLISMLTFVFKSARAARK---EMHLCASLIKQMEATQQAERKSMNKSLAFANA 377
+ + T+ VLI + KSA K + H K E QAE + KS A
Sbjct: 335 IFIFTIFVLIGYTGY--KSASHINKVEDDFH------KMQELKVQAEAADVAKSQFLATV 386
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN--------VCANDLLGLLNSILDT 429
SH+IR + GI G++ L L+T+LR C L+ L+N +LD
Sbjct: 387 SHEIRTPMNGILGMLALL---------LDTDLRSTQRDYAQTAQACGKSLITLINEVLDR 437
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
+K+EAGK++L FD+ +L+DV+ LF + RKGVE+ + SD V GD +
Sbjct: 438 AKIEAGKLELEAVPFDLRSILDDVLSLFSDESRRKGVELAVFVSDKVP---GIVMGDPGR 494
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG---NPSLSSSRHGFLQSIS------- 539
+Q+++NL+ N+VKFT +GHI V+ + + + G N L+ +++S
Sbjct: 495 FRQVITNLVGNSVKFTEQGHIFVQVHLAEQTKDGVKNNTCLTGESESVYETLSGYETAAS 554
Query: 540 --------------CLFYKN--KKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKR 583
L+YK+ K+A DL + V+DTG GIP + +
Sbjct: 555 QNTWDSLKHTIADNGLYYKSATKEANDDL---------SQNVTVMVSVEDTGIGIPIQAQ 605
Query: 584 KTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
VF ++Q GGTG+GL I + LV LMGG I + + + G+ F F + L
Sbjct: 606 DRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIGFISRP--QIGSTFSFTLNL 662
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 29/149 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GKKILV DD+++ RRVA L+ GA VE ++G+AAL L L PH
Sbjct: 837 LCGKKILVVDDNLVNRRVAAGALKKFGADVECADSGKAALSL----------LQIPH--N 884
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEE-----------------KRNQVHIPIIALTAHIS 1098
+D MD +MP M+G+EATR+IR+ E K + H+PI+A+TA +
Sbjct: 885 FDACFMDIQMPEMDGFEATRRIRDLERVANEQLNGGLNSDGATKWRKWHMPILAMTADVI 944
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+K ++ GMD ++ KP ++L +A+
Sbjct: 945 HATLEKCLKCGMDGYVSKPFEEENLYQAV 973
>gi|88857651|ref|ZP_01132294.1| putative sensor protein [Pseudoalteromonas tunicata D2]
gi|88820848|gb|EAR30660.1| putative sensor protein [Pseudoalteromonas tunicata D2]
Length = 648
Score = 129 bits (324), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 143/293 (48%), Gaps = 56/293 (19%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE-LETNLR 410
+L KQ+ Q+AE KS AN SH+IR L G+ G++EL V P S+ L+ L+
Sbjct: 129 ALEKQVLERQRAEAA---KSAFLANMSHEIRTPLNGVIGMLEL--VADEPLSDKLQQFLQ 183
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ A LL ++N ILD SK+EAGK+ + +F++ ED++ F P A +K + ++
Sbjct: 184 IASNSAESLLFIINDILDFSKIEAGKVDIDPVEFELLTFFEDIIASFIPAANKKAISLIF 243
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
D S L+ + V+ D+ +++QIL NLLSNA+KFT +G + V
Sbjct: 244 DSSH---LETTLVRADKQRVRQILVNLLSNAIKFTEQGEVVVEV---------------- 284
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+LQ I D + +V DTG GI +FE +
Sbjct: 285 ---YLQKI----------------------DSQTAQLVCKVLDTGIGIEAHVIAKLFEPF 319
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
Q + GGTGLGL I + L LMGG++ + K +G+CF F + L
Sbjct: 320 QQSDSSISRRFGGTGLGLAIAKQLCHLMGGELTLSSKVG--KGSCFEFEILLV 370
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 11/124 (8%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILV +D+ + + VA+ L+ LG E+G+AAL + + Q +L IL
Sbjct: 519 ILVVEDNPINQIVAKECLKKLGYQYAVVEHGQAALDYLNTHPTPQINL----------IL 568
Query: 1061 MDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MDC+MPIM+G+ AT KIR E HIPI+ALTA++ E ++ ++ GM+ L KP++
Sbjct: 569 MDCQMPIMDGFTATAKIRAGEATEFYQHIPILALTANVIESERERCLQIGMNDFLAKPIS 628
Query: 1120 RDHL 1123
D L
Sbjct: 629 LDIL 632
>gi|434399975|ref|YP_007133979.1| multi-sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
gi|428271072|gb|AFZ37013.1| multi-sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
Length = 811
Score = 129 bits (324), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 141/275 (51%), Gaps = 39/275 (14%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH++R L I G +L ++ + + NL +N LL L+N +L+
Sbjct: 465 KSEFLANMSHELRTPLNAILGFTQLLLQDSSLNPKHQQNLEIINSSGEHLLTLINDVLEM 524
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
S+++AG++ L E FD+ ++L D+ +F P A K +++ + D ++ +F ++ D+ K
Sbjct: 525 SRLQAGRVTLQLESFDLYQMLNDLEVMFKPRAEAKNLQLSFE-CDANIPQF--IQTDQQK 581
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+Q+L NLLSNA+KFT G I++R ++ + K
Sbjct: 582 LRQVLINLLSNALKFTQVGAIALR------------------------VAAFSFSTKAQS 617
Query: 550 GDLEAVNAAQR-------DENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK---EGEGG 599
+E +NA+ + M TFEV+DTG GI + +++F+ + Q K + G
Sbjct: 618 NTIEGINASSTFLTQGTAHQPQMTLTFEVEDTGCGIAASEFESIFDAFAQAKKVPKEHEG 677
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
TGLGL I +RL+GGDI V GE GT +F
Sbjct: 678 TGLGLAISNQFIRLLGGDIS-VSSIVGE-GTILKF 710
>gi|451820687|ref|YP_007456888.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451786666|gb|AGF57634.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 949
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 151/309 (48%), Gaps = 60/309 (19%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R A KE+ ++A +QAE ++ KS AN SH+IR + GI G +EL
Sbjct: 307 RKAEKEL---------LKAKEQAEAANVAKSQFLANMSHEIRTPMNGIFGFLELLQT-TE 356
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
E E +R+ + LL ++N ILD SK+EA K+ + F++ +ED V L
Sbjct: 357 LSLEQEEFIREAKSASEILLYIINDILDFSKIEAKKLVMESIKFNLRTTIEDAVSLLSHK 416
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
A+ KG+E+ + DG +V GD +++QIL+NL+SNAVKFT G ISV
Sbjct: 417 AVEKGLEIYVMIKDGVP---EEVIGDPSRIRQILNNLISNAVKFTESGDISV-------- 465
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
+V+ +++ + FEV DTG GI K
Sbjct: 466 ---------------------------------SVDYEEKENDMANLYFEVKDTGIGIRK 492
Query: 581 EKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
E +F+++ Q GGTGLGL I LV++M G++ V+ E G +G+ F+FNV
Sbjct: 493 EDIHKLFQSFNQADASTTRKYGGTGLGLAISSELVKMMDGEMN-VESEFG-KGSTFKFNV 550
Query: 637 FLAIREASA 645
L I + S+
Sbjct: 551 NLKIAKRSS 559
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 14/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KIL+ +D+ + R++ L+ T + NG A++ V +RD YD +
Sbjct: 721 KILLVEDNEINRKIVIGILKSREMTCDIAVNGSEAVKAVL-----ERD--------YDVV 767
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MDC+MP+M+GYE+T +IRE E + H IIA+TA+ +++K I+AGMD ++ KP+N
Sbjct: 768 FMDCQMPVMDGYESTARIRELEGEKK-HTTIIAMTANAMEGDSEKCIQAGMDYYISKPIN 826
Query: 1120 RDHLMEAIK 1128
+ + I+
Sbjct: 827 FELMFSMIE 835
>gi|431931052|ref|YP_007244098.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
gi|431829355|gb|AGA90468.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
Length = 839
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 151/307 (49%), Gaps = 54/307 (17%)
Query: 351 ASLIKQME-ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
A L++++ A +A S KS A SH++R L G+ G+ +L +++ E ++
Sbjct: 147 AVLMRRLTVAIARANEASRAKSQFLAKMSHELRTPLNGVIGMSDLL-MDSRLSREQQSFA 205
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK--GVE 467
R + A LLG++ +ILD SK+EAG++ L DFD+ LL D V +F P A RK +
Sbjct: 206 RTIQNSATTLLGIIENILDFSKIEAGRVTLEFVDFDLHRLLTDTVKMFRPQAQRKRLALN 265
Query: 468 VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
+ +DP +L KGD + ++QI+ NLLSNAVKFT +G + +R P
Sbjct: 266 LCIDPQVPFLL-----KGDPLHVRQIVMNLLSNAVKFTEDGWVELRVAQAVP-------- 312
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
+N + ++ FEV+DTG GIP ++ +F
Sbjct: 313 ---------------------------ING----QASVRLRFEVEDTGIGIPPADQRRIF 341
Query: 588 ENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
E++ Q GGTGLG I + L +LMGGDI + + +G+ F + ++E
Sbjct: 342 ESFRQADSSTTRRFGGTGLGTAIARELAQLMGGDIGL--ESTPGKGSLFWVELPFVLQEE 399
Query: 644 SANDNNT 650
+ ++ T
Sbjct: 400 TRREHGT 406
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G +ILVA+D+ R V L LG V ++GE+AL L DQ GA +D
Sbjct: 560 GMQILVAEDNETNRLVLRGLLERLGHRVTVVDDGESALD----ALADQSGAGA-----FD 610
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+++D MP +G E + R R V P I LTA + E EAG+D +L KP
Sbjct: 611 LMILDHNMPGRSGLEVYKAHRFMMLRRPV--PTIILTADATSEAQAACREAGVDAYLTKP 668
Query: 1118 LNRDHLMEAIKYL 1130
+ L+E I L
Sbjct: 669 VETARLLETIAAL 681
>gi|421092186|ref|ZP_15552941.1| GHKL domain protein [Leptospira kirschneri str. 200802841]
gi|409998996|gb|EKO49697.1| GHKL domain protein [Leptospira kirschneri str. 200802841]
Length = 838
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 147/299 (49%), Gaps = 56/299 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM-NVC 415
++A AE + KS A SH+IR L GI GLIE ++ P E + ++R +
Sbjct: 455 LKARDDAEFANKIKSQFLAAMSHEIRTPLNGIIGLIE--QFKSTPLDENQQHIRNLIQKS 512
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
LL ++N ILD SK+EA K+ L ++F E++E+ + +F A +KG+ + +D S
Sbjct: 513 GETLLKIINDILDFSKLEADKIDLELQEFCWKEIVEETIGIFLYQATQKGLVLSIDYSPD 572
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ K GD+ ++ QILSNL+SNA+KFT G I +RA
Sbjct: 573 FI---DKSVGDKRRIVQILSNLISNAIKFTDSGKIQIRAL-------------------- 609
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+++ E +E+ +V D+G GIP+EK +F+ + Q
Sbjct: 610 ----------------------SEKIETKIEYKIQVIDSGIGIPREKIDLLFQKFFQLDS 647
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
+ GGTGLGL I + LV LM G I + +N +G+ F F V L+ E + D+ T
Sbjct: 648 SISRKYGGTGLGLAISKKLVELMSGKIHVF--QNKSKGSTFEFTVLLS--EFVSKDHPT 702
>gi|170738563|ref|YP_001767218.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
gi|168192837|gb|ACA14784.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
Length = 708
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 141/308 (45%), Gaps = 64/308 (20%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
RA R+ ++ EA +AE S+ KS A SH+ R L GI G+ +L +E
Sbjct: 177 RAGREITERVEAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLV-LETP 235
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
E ET +R + LL L++ ILD SK+EAG++ L E FD L+E VV+L P
Sbjct: 236 LSPEQETYIRAIKTSGEALLTLIDGILDFSKIEAGRLDLACEPFDPAALVESVVELLAPR 295
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
A KG+E+ D +D +V GD +++QIL NL NAVKFT G + +
Sbjct: 296 AQDKGLEIAADLADDLP---PRVLGDGDRVRQILLNLAGNAVKFTEAGGVGI-------- 344
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
++ R G + V DTG GIP+
Sbjct: 345 -------TAERVG-------------------------------EDLVLAVHDTGPGIPE 366
Query: 581 EKRKTVFENYVQVKEGEG-------GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFR 633
E+ +FE + Q G+G GTGLGL I + LV MGG IE + G+CFR
Sbjct: 367 ERLPLLFEEFEQ---GDGSASRRHEGTGLGLAITRRLVDRMGGRIETTSRPGA--GSCFR 421
Query: 634 FNVFLAIR 641
V L +R
Sbjct: 422 --VVLPLR 427
>gi|77362202|ref|YP_341776.1| two-component hybrid sensor and regulator [Pseudoalteromonas
haloplanktis TAC125]
gi|76877113|emb|CAI89330.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
haloplanktis TAC125]
Length = 1585
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 137/274 (50%), Gaps = 52/274 (18%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
A+ + KS A SH+IR + G+ G++EL +E P +ET + A+ LLG+
Sbjct: 1062 AKEAGVAKSQFLATMSHEIRTPMNGVLGMLELIQLEQLP-KPIETKVAIAKTSAHSLLGV 1120
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N ILD SK EAGK++L +F+ +L+ +V A KG+E++LD L+ S+
Sbjct: 1121 INDILDFSKAEAGKIELESINFNARDLIGEVAAAQALTAQNKGIEIILDL---VALEPSQ 1177
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLF 542
+ GD +++Q+L+NLLSNAVKFT+EG + V A +
Sbjct: 1178 LSGDPGRIRQVLTNLLSNAVKFTNEGEVVVSASI-------------------------- 1211
Query: 543 YKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----G 598
+R E + V D+G GI KEK++ +F ++QV G
Sbjct: 1212 ----------------ERIEAQLMLQVSVKDSGIGISKEKQQQLFAPFMQVDASTTREYG 1255
Query: 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GTGLGL I + L LMGG I I K N +G+ F
Sbjct: 1256 GTGLGLAISKQLCELMGGAITI--KSNAGQGSEF 1287
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 11/136 (8%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
K + KIL+ +D+ + ++V+ + L+ L ENG+ AL+ +L
Sbjct: 1457 KTIEPAKILLVEDNPINQQVSTLMLKKLNCETVLAENGQRALE----------ELAKHEA 1506
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDV 1112
+ +LMDC+MP+M+GY+AT IR+ E Q I IIALTA+ + ++ I GM+
Sbjct: 1507 GYFQVVLMDCQMPVMDGYDATIAIRKGEAGEQHKAIKIIALTANAMDSDKERCIAVGMND 1566
Query: 1113 HLGKPLNRDHLMEAIK 1128
+L KP+ D L + ++
Sbjct: 1567 YLSKPIELDILKDKLE 1582
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 968 NSSGEGSSRYKQTEIEEEDG-ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVE 1026
+++G+GS E+ + D ER + + G ILV DD+ R V L+H GA VE
Sbjct: 1279 SNAGQGSEFIVTMEVLKGDQQERYMPKANINGLSILVVDDNETNRLVISEQLKHWGANVE 1338
Query: 1027 ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV 1086
N E AL + + + + + + YD ++D +MP M+G E ++
Sbjct: 1339 LANNAEHALLICENRVKNNQGM-------YDIAVLDMQMPGMDGIELCEVLKAHADYK-- 1389
Query: 1087 HIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
H+P++ +T+ E A + +AG + KP+ L+ A+
Sbjct: 1390 HMPLVMMTSIAGLEGAQRYSDAGFQAYFPKPVTTADLISAL 1430
>gi|418679656|ref|ZP_13240917.1| GHKL domain protein [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418684627|ref|ZP_13245811.1| GHKL domain protein [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|418740382|ref|ZP_13296760.1| GHKL domain protein [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|400320098|gb|EJO67971.1| GHKL domain protein [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410740827|gb|EKQ85541.1| GHKL domain protein [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|410752386|gb|EKR09361.1| GHKL domain protein [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 838
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 147/299 (49%), Gaps = 56/299 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM-NVC 415
++A AE + KS A SH+IR L GI GLIE ++ P E + ++R +
Sbjct: 455 LKARDDAEFANKIKSQFLAAMSHEIRTPLNGIIGLIE--QFKSTPLDENQQHIRNLIQKS 512
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
LL ++N ILD SK+EA K+ L ++F E++E+ + +F A +KG+ + +D S
Sbjct: 513 GETLLKIINDILDFSKLEADKIDLELQEFCWKEIVEETIGIFLYQATQKGLVLSIDYSPD 572
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ K GD+ ++ QILSNL+SNA+KFT G I +RA
Sbjct: 573 FI---DKSVGDKRRIVQILSNLISNAIKFTDSGKIQIRAL-------------------- 609
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+++ E +E+ +V D+G GIP+EK +F+ + Q
Sbjct: 610 ----------------------SEKIETKIEYKIQVIDSGIGIPREKIDLLFQKFFQLDS 647
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
+ GGTGLGL I + LV LM G I + +N +G+ F F V L+ E + D+ T
Sbjct: 648 SISRKYGGTGLGLAISKKLVELMSGKIHVF--QNKSKGSTFEFTVLLS--EFVSKDHPT 702
Score = 41.2 bits (95), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 1001 ILVA-DDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
IL+A DDS + ++ I L+ L E ++G A+ VR +D I
Sbjct: 719 ILIAEDDSTNIFLLSGI-LKKLKIRFELAKDGLEAITKVRVS-------------RFDLI 764
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP ++G A+ I + + + IIA+TA + E+ K +AGM LGKP
Sbjct: 765 FMDINMPHLDGISASNFILTDPMISPKPV-IIAVTADVLQEDKIKCRQAGMSDFLGKPYY 823
Query: 1120 RDHLMEAI-KYL 1130
+ + + I K+L
Sbjct: 824 KKDIEQMIYKWL 835
>gi|428312449|ref|YP_007123426.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428254061|gb|AFZ20020.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 655
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 139/272 (51%), Gaps = 47/272 (17%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH++R+ L I G +L + E NL + LL L+N +LD
Sbjct: 189 KSTFIANMSHELRSPLNVILGFTQLMTKSSTLAPEQRENLSIIARSGEHLLTLINQVLDL 248
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAG+ L E +FD+ LL+D+ D+F A + +++V + + + ++ V+ D VK
Sbjct: 249 SKIEAGRTTLNETNFDLHRLLDDLEDMFQLKADERHLQLVFE-RNSDIPQY--VRTDEVK 305
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+QIL NLL+NA+KFT EG + CL K + +
Sbjct: 306 LRQILINLLNNAIKFTQEGGV-----------------------------CLRVKRQTSN 336
Query: 550 GDLEAVNAAQRDENAMEF--TFEVDDTGKGIPKEKRKTVFENYVQV---KEGEGGTGLGL 604
+ E EN +F FE++DTG GI ++ + +FE +VQ K+ + GTGLGL
Sbjct: 337 DETE--------ENISQFKLNFEIEDTGYGICQDDLEAIFEAFVQSQTGKQAQEGTGLGL 388
Query: 605 GIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
I + V+LM G+I V E G GT F F++
Sbjct: 389 PIARKFVQLMDGEI-TVSSEVG-HGTIFNFDI 418
Score = 53.1 bits (126), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ DD R + L LG ++ NG+ A+++ D PH+ I
Sbjct: 448 RILIVDDKWSNRHLLMKLLSPLGFELKEASNGKEAIEV--------WDTWEPHL-----I 494
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MPI++GYEAT++I+ K IIALTA E+ + AG D + KP
Sbjct: 495 WMDMRMPILDGYEATKQIKGISKGQAT--AIIALTASTLEEDRAIVLSAGCDGFVRKPFR 552
Query: 1120 RDHLMEAI 1127
+ +A+
Sbjct: 553 EADIWDAM 560
>gi|386346558|ref|YP_006044807.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
gi|339411525|gb|AEJ61090.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
Length = 785
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 142/287 (49%), Gaps = 51/287 (17%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
++A R +KS AN SH+IR L I G+ EL + E ++Q+ LL
Sbjct: 131 EEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLE-DTRLDEEQRDYVQQIRFSGEALL 189
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
L+N ILD SK+EAGK+ + DFD+ E++E V + A +K +EVV+D +
Sbjct: 190 ALINDILDYSKIEAGKLPMEIIDFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEEVP--- 246
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
+VKGD ++++QIL NL +NAVKFT +GH+ R
Sbjct: 247 RRVKGDPLRIRQILVNLANNAVKFTEKGHVFCR--------------------------- 279
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--- 597
V Q+ + F V+DTG GIP+ K+ +F + Q+ E
Sbjct: 280 --------------VQLVQQRKGVAWVAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRR 325
Query: 598 -GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
GGTGLGL I +SLV +M G+I + +E GE G+ F F + L I E+
Sbjct: 326 FGGTGLGLAISKSLVEMMKGEIGVRSRE-GE-GSSFWFLLPLPIVES 370
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 17/128 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D ++ + + L LG VE NG+ A V GL L D I
Sbjct: 532 ILVAEDHIVNQELFFTILSRLGYRVELAGNGKEA---VEKGLA----------LKPDLIF 578
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP MNGY+A R +RE P+IA+TA E+ ++ + AGM L KP +
Sbjct: 579 MDVQMPEMNGYDAARVLREHGYEG----PVIAVTASAFREDRERALAAGMSDFLPKPFKK 634
Query: 1121 DHLMEAIK 1128
L+ ++
Sbjct: 635 KDLLPVLQ 642
>gi|328877192|pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
gi|328877193|pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With Mg2+
Length = 206
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 90/127 (70%), Gaps = 2/127 (1%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
LRGK++LV DD+ + R+VA L+ +G + VE C++G+ AL+LV GL + + G+ L
Sbjct: 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKL 118
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG-EEADKTIEAGMDVH 1113
P+DYI MDC+MP M+GYEATR+IR+ EK V PIIA++ H G EEA +TI+AGMD
Sbjct: 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAF 178
Query: 1114 LGKPLNR 1120
L K LN+
Sbjct: 179 LDKSLNQ 185
>gi|300856171|ref|YP_003781155.1| sensor histidine kinase/response regulator hybrid [Clostridium
ljungdahlii DSM 13528]
gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium ljungdahlii DSM 13528]
Length = 949
Score = 129 bits (324), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 153/304 (50%), Gaps = 60/304 (19%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R A +E++ +A +QAE ++ KS AN SH+IR + GI G ++L
Sbjct: 307 RLAERELY---------KAKEQAEAANIAKSQFLANMSHEIRTPMNGIFGFLDLLQ-STN 356
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
E + +R+ + LL ++N ILD SK+EA K+ + + F++ +ED V L P
Sbjct: 357 LSLEQKDFIREAKSASKVLLYIINDILDFSKIEAKKLTMEKIRFNLRNTIEDAVSLLVPK 416
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
A+ KG+E+ S+G +V GD +L+QIL+NL+SNAVKFT++G ISV
Sbjct: 417 AVEKGLELYTMISEGVP---EEVVGDPSRLRQILNNLISNAVKFTNKGEISV-------- 465
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
++ CL +N+ A FEV DTG GI K
Sbjct: 466 ----------------TVDCLKEENETAV-----------------LNFEVKDTGIGIRK 492
Query: 581 EKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ +F+++ Q GGTGLGL I LV++MGG+I V+ G +G+ F+F+V
Sbjct: 493 DHIDNIFKSFSQADTSTTRKYGGTGLGLAISSELVKMMGGEIH-VESIFG-KGSIFKFDV 550
Query: 637 FLAI 640
L I
Sbjct: 551 RLKI 554
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 22/176 (12%)
Query: 953 RRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRR 1012
R D++ +++L +GEG + ++E A +P +IL+ +D+ M R+
Sbjct: 682 RDDLLACIAMVLGLKKENGEGHQVITKHIVKE----VKNALEP----RILLVEDNKMNRK 733
Query: 1013 VAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYE 1072
+ L+ T + +G AL+ V Q+D YD + MDC+MP+M+GYE
Sbjct: 734 IVITMLKSHDMTCDVAVDGSEALKAVL-----QKD--------YDVVFMDCQMPVMDGYE 780
Query: 1073 ATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
T KIR E ++ H IIA+TA+ +++K I+ GMD ++ KP+N + + + I+
Sbjct: 781 CTSKIRMLEG-DKKHTTIIAMTANAMDGDSEKCIKTGMDDYISKPINFNKMFKMIE 835
Score = 47.4 bits (111), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
A + L G IL+ +D + R++ L+ G V ENG +A+ + S + + +
Sbjct: 564 AFEKLDGMNILIVNDDVNNRKIINSYLQETGLKVSEAENGSSAITTILSNASTKNKINIA 623
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
+MD +M M+GYE ++ +I +I LT+ A+ E G
Sbjct: 624 --------IMDYQMNDMSGYELANTLKTIPFAK--NIKLILLTSITQKGNAETVKEYGFS 673
Query: 1112 VHLGKPLNRDHLMEAI 1127
+L KP+ RD L+ I
Sbjct: 674 SYLSKPVRRDDLLACI 689
>gi|389709421|ref|ZP_10186814.1| GacS-like sensor kinase protein [Acinetobacter sp. HA]
gi|388610222|gb|EIM39351.1| GacS-like sensor kinase protein [Acinetobacter sp. HA]
Length = 936
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 139/296 (46%), Gaps = 51/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 273 ITYRQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLLLRQGNLSNEQSLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK++AGK++L FD+ E + DV+D+ P+A +K +++ +
Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETALFDLEEAIFDVMDMLSPLAAQKHIDMAFYYA 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 393 DNVP---KCVNGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDD-IG---------- 438
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 439 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIRE 642
V GGTGLGL I + LV LM G I D + E+G+ F F + E
Sbjct: 469 DTSVTRQFGGTGLGLAISKQLVSLMHGQIGFEDNQERAPTEKGSTFWFTAQFLVDE 524
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G IL DD + V E L L T +G+ A+ +++ + L A +
Sbjct: 662 QGLHILAVDDHLPNLIVLEALLGELNVTTTKATSGQEAIDIIQK--RHEEGLSA-----F 714
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEK--RNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E N +PIIALTAH +E K ++ GMD ++
Sbjct: 715 DLVFMDIQMPVMSGMDTTRAIRSLESTFENHRRLPIIALTAHALSDEKQKLLQGGMDDYV 774
Query: 1115 GKP 1117
KP
Sbjct: 775 TKP 777
>gi|374585381|ref|ZP_09658473.1| multi-sensor hybrid histidine kinase [Leptonema illini DSM 21528]
gi|373874242|gb|EHQ06236.1| multi-sensor hybrid histidine kinase [Leptonema illini DSM 21528]
Length = 795
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 138/288 (47%), Gaps = 52/288 (18%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS+ A+ SH++R L I G L + N+ +N LL L+N +LD
Sbjct: 346 KSVFLASMSHELRTPLNAILGFSRLLQSDRTLPDHTRKNVEIINRSGTHLLRLINDVLDM 405
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
+K+E+G MQL + FD+GELL DV DL A KG+++++D D + ++ + D +
Sbjct: 406 AKIESGSMQLQKAPFDLGELLCDVTDLMRQRAEEKGLQLIID-QDSTFPRY--IVADEGR 462
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
++QIL NL+ NAVKFT +G +++R
Sbjct: 463 VRQILINLIGNAVKFTEQGGVTLR------------------------------------ 486
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE--GEGGTGLGLGIV 607
R+ EV+D+GKGI E+ + +FE +VQ+ + G GTGLGL I
Sbjct: 487 -------LGTRENTLSHLQIEVEDSGKGIAPEECRRIFEPFVQLGDQGGSHGTGLGLAIT 539
Query: 608 QSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKE 655
+ V LMGG I + + E+G+ FR V L + EA +D E E
Sbjct: 540 KQYVELMGGSISVTS--SPEKGSVFR--VELPLEEAKEDDIQRANEAE 583
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D + + + + ++G +V NGE ++L S PH +I
Sbjct: 597 RILIVEDQRDNQLLLQTLMENIGLSVRIASNGEEGVRLFESY--------RPH-----FI 643
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
MD MP+M+G EAT+KIR + I+A+TA E+ D+ + G+D + KP
Sbjct: 644 WMDRRMPVMDGIEATKKIR--SLPGGADVRIVAVTASAFAEQRDEMLAVGLDDFVRKP 699
>gi|431795166|ref|YP_007222071.1| PAS/PAC sensor hybrid histidine kinase [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785392|gb|AGA70675.1| PAS/PAC sensor hybrid histidine kinase [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 781
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 154/303 (50%), Gaps = 55/303 (18%)
Query: 344 RKEMHLCASLIKQ--MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
R+E+ + ++Q A ++AE + KS AN SH+IR + GI G+I+L + A
Sbjct: 256 RREIEVKRKQVEQELHSAKEKAEAANRAKSEFLANMSHEIRTPINGIIGMIDLTLLTALD 315
Query: 402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
S+ E NLR + A L ++N ILD SK+EAGK+ + E F++ +++ED + P A
Sbjct: 316 ESQRE-NLRVVKSSAYSLFKIINDILDFSKIEAGKLAIDEMCFNLKKVIEDTIKTHAPEA 374
Query: 462 MRKGVEV-VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
R+G+++ + P++ + + GD ++KQ+L+NLL+NA+KFT +G +S+
Sbjct: 375 ERRGLDLNTILPANIP----NNLIGDPGRIKQVLNNLLNNAIKFTEQGEVSL-------- 422
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
S+ C+ Q D++ EF F + DTG GI K
Sbjct: 423 ----------------SLKCI-----------------QSDKDFWEFKFTIMDTGIGISK 449
Query: 581 EKRKTVFENYVQVK----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF--RF 634
+ +F+ + QV GGTGLGL I + LV +MGG I + ++ CF RF
Sbjct: 450 ADQAKLFKQFNQVDGSITRKYGGTGLGLAISKKLVEMMGGRIWLESQKGKGSSFCFILRF 509
Query: 635 NVF 637
F
Sbjct: 510 KHF 512
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 14/125 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D ++ V L+ G V+ +GEAAL L QR+ PYD I
Sbjct: 537 RILLAEDHLVNSLVITEMLKKHGHDVDVAMDGEAALALY------QRN-------PYDVI 583
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+D ++P ++G E T++IR E H PIIALTA+ + ++ + +GMD ++ KP+
Sbjct: 584 LLDIQLPKLDGMEVTKRIRHMEGAKN-HTPIIALTAYALKADRERFLSSGMDEYIPKPVM 642
Query: 1120 RDHLM 1124
+ L+
Sbjct: 643 MEELV 647
>gi|421128859|ref|ZP_15589070.1| GHKL domain protein [Leptospira kirschneri str. 2008720114]
gi|410359971|gb|EKP07011.1| GHKL domain protein [Leptospira kirschneri str. 2008720114]
Length = 838
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 147/299 (49%), Gaps = 56/299 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM-NVC 415
++A AE + KS A SH+IR L GI GLIE ++ P E + ++R +
Sbjct: 455 LKARDDAEFANKIKSQFLAAMSHEIRTPLNGIIGLIE--QFKSTPLDENQQHIRNLIQKS 512
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
LL ++N ILD SK+EA K+ L ++F E++E+ + +F A +KG+ + +D S
Sbjct: 513 GETLLKIINDILDFSKLEADKIDLELQEFCWKEIVEETIGIFLYQATQKGLVLSIDYSPD 572
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ K GD+ ++ QILSNL+SNA+KFT G I +RA
Sbjct: 573 FI---DKSVGDKRRIVQILSNLISNAIKFTDSGKIQIRA--------------------- 608
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+++ E +E+ +V D+G GIP+EK +F+ + Q
Sbjct: 609 ---------------------FSEKIETKIEYKIQVIDSGIGIPREKIDLLFQKFFQLDS 647
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
+ GGTGLGL I + LV LM G I + +N +G+ F F V L+ E + D+ T
Sbjct: 648 SISRKYGGTGLGLAISKKLVELMSGKIHVF--QNKSKGSTFEFTVLLS--EFVSKDHPT 702
Score = 41.2 bits (95), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 1001 ILVA-DDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
IL+A DDS + ++ I L+ L E ++G A+ VR +D I
Sbjct: 719 ILIAEDDSTNIFLLSGI-LKKLKIRFELAKDGLEAITKVRVS-------------RFDLI 764
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP ++G A+ I + + + IIA+TA + E+ K +AGM LGKP
Sbjct: 765 FMDINMPHLDGISASNFILTDPMISPKPV-IIAVTADVLQEDKIKCRQAGMSDFLGKPYY 823
Query: 1120 RDHLMEAI-KYL 1130
+ + + I K+L
Sbjct: 824 KKDIEQMIYKWL 835
>gi|398338431|ref|ZP_10523134.1| histidine kinase sensor protein [Leptospira kirschneri serovar Bim
str. 1051]
Length = 829
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 147/299 (49%), Gaps = 56/299 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM-NVC 415
++A AE + KS A SH+IR L GI GLIE ++ P E + ++R +
Sbjct: 446 LKARDDAEFANKIKSQFLAAMSHEIRTPLNGIIGLIE--QFKSTPLDENQQHIRNLIQKS 503
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
LL ++N ILD SK+EA K+ L ++F E++E+ + +F A +KG+ + +D S
Sbjct: 504 GETLLKIINDILDFSKLEADKIDLELQEFCWKEIVEETIGIFLYQATQKGLVLSIDYSPD 563
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ K GD+ ++ QILSNL+SNA+KFT G I +RA
Sbjct: 564 FI---DKSVGDKRRIVQILSNLISNAIKFTDSGKIQIRAL-------------------- 600
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+++ E +E+ +V D+G GIP+EK +F+ + Q
Sbjct: 601 ----------------------SEKIETKIEYKIQVIDSGIGIPREKIDLLFQKFFQLDS 638
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
+ GGTGLGL I + LV LM G I + +N +G+ F F V L+ E + D+ T
Sbjct: 639 SISRKYGGTGLGLAISKKLVELMSGKIHVF--QNKSKGSTFEFTVLLS--EFVSKDHPT 693
>gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
indicum S5]
gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum
indicum S5]
Length = 864
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 167/343 (48%), Gaps = 68/343 (19%)
Query: 310 VHRTSKRALILLIVMTVGVLISMLTFVFKSARAAR-------KEMHLCASLIKQME-ATQ 361
+HRTS + LL ++++ + +SA R + L ++E A
Sbjct: 149 MHRTSVATMELL-----SIILTSTAYALESAELYRLLSQDNERLQKLVEKRTAELERARD 203
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLG 421
QAE + KS AN SH++R L+GI G+++L ++ +E + R + A+ LL
Sbjct: 204 QAEGANRAKSQFLANMSHELRTPLSGIIGMVDL-LLDTRLDNEQQEYARLASDSAHALLA 262
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGSVLK 479
L+N ILD SK+EAGK+++ E +F +G L E V +LF A +KG+ + +DP +
Sbjct: 263 LINDILDFSKIEAGKLEIEEAEFSLGSLTEGVTELFALAAQKKGIVLTSYVDPQLPAY-- 320
Query: 480 FSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSIS 539
V+GD ++L+Q+L+NLLSNA+KFT +G + ++
Sbjct: 321 ---VRGDALRLRQVLANLLSNALKFTEKGSVQLQV------------------------- 352
Query: 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE-- 597
K GD A FEV DTG G+ E + +F+++ Q
Sbjct: 353 -------KILGD---------GGQAPLIRFEVCDTGIGVDAEVAERLFQSFTQADSSTTR 396
Query: 598 --GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I ++LV LMGG+I I + +G+ F F + L
Sbjct: 397 KYGGTGLGLAICRNLVELMGGEIGIESRLG--QGSTFWFTLPL 437
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 14/127 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ + + + L +G V +G AL+ + Y +L
Sbjct: 607 VLLVEDNRVNQLAVRMQLEKMGFEVHLAAHGREALEKLEKN-------------TYALVL 653
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MDC+MP+M+GYEATR IR +E H+PIIALTA+ ++ +K + AGMD HL KP+ R
Sbjct: 654 MDCQMPVMDGYEATRAIRAKECGTDNHLPIIALTANAMEQDREKCLAAGMDGHLTKPV-R 712
Query: 1121 DHLMEAI 1127
L++ +
Sbjct: 713 PELLQPV 719
>gi|333985386|ref|YP_004514596.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333809427|gb|AEG02097.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 1014
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 160/313 (51%), Gaps = 52/313 (16%)
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS 403
R E+ + + ++A +AE S K L AN SH+IR + I GL +L + P
Sbjct: 254 RLELEVAQRTAEYLQAKDEAEAASRAKGLFLANMSHEIRTPMNAIVGLSDLA-LNNNPPP 312
Query: 404 ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
+L L++++ + L+ + N ILD SKVEAG+++LI E F + E+LE+V++LF A
Sbjct: 313 KLLDYLQKIHTSSLALMAITNDILDYSKVEAGRLELISEAFSLEEMLENVLNLFIVRAEE 372
Query: 464 KGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG 523
KG+E+VL+ D ++ ++ GD ++L Q+L+NL+ NAVKFT G I ++ V++ +++
Sbjct: 373 KGLEIVLE-LDHTL--PPRLIGDALRLGQVLNNLVGNAVKFTEAGEIHIK--VEQLASV- 426
Query: 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKR 583
HG+ F V D+G G+ E+
Sbjct: 427 --------HGY------------------------------ATLKFSVRDSGIGMTHEQI 448
Query: 584 KTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
+F+ + Q + GGTGLGL I ++L+ +MGG++ + + + G+ F F + L
Sbjct: 449 NHLFQAFTQADGSITRRFGGTGLGLAISKNLIEMMGGELTV--QSRIDIGSVFEFTLILP 506
Query: 640 IREASANDNNTQG 652
+ E N N G
Sbjct: 507 LPE-EPNPNQASG 518
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+RG IL+ +D+ + + VA L G V NG ++ +R
Sbjct: 671 IRGAHILLVEDNEINQLVAREYLESTGLIVTVANNGREGVEAIRQS-------------K 717
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D +LMD +MP ++G EATR +R +++ +PIIA+TA + +E AGM HLG
Sbjct: 718 FDAVLMDLQMPELDGIEATRIVRRDKRF--ADLPIIAMTAAVQDKERTDCYSAGMTDHLG 775
Query: 1116 KPLNRDHLMEAI 1127
KP+ L+E +
Sbjct: 776 KPVLPQTLIEVL 787
Score = 47.4 bits (111), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
E+ +QA L ++L+ DD + R++ ++ G V GE AL +++ +
Sbjct: 509 EEPNPNQASGHLHSMRVLIVDDLDISRQILRDIMQAWGFQVVEASTGEEALAQLKAANDA 568
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEE 1101
+D ++ +L+D +MP ++G E TR IR+ ++ ++ H P+I + S E+
Sbjct: 569 GQD--------FELVLLDWKMPGLDGVEVTRTIRDMVRKAEIRHAPVIIMVTAFSREK 618
>gi|392308784|ref|ZP_10271318.1| GGDEF domain protein [Pseudoalteromonas citrea NCIMB 1889]
Length = 1385
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 156/328 (47%), Gaps = 59/328 (17%)
Query: 329 LISMLTFVFK-SARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAG 387
+I FV K + + K L A +A ++AE + KS AN SH+IR + G
Sbjct: 815 IIRQKQFVIKLEEQVSEKTASLEAQASDLADALKEAEAATQLKSEFLANMSHEIRTPMNG 874
Query: 388 ITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447
+ G+++L + S+ ++ + A LL L+N ILD SK+EA K++L DF++
Sbjct: 875 VIGMLDLLK-NSNLSSDQAHSVNIASSSAQSLLTLINDILDFSKIEADKLELEHIDFNLT 933
Query: 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE 507
EL+E + + A +KGVEV+LD +D + V D +++Q+L+N++SNA+KFT
Sbjct: 934 ELIEQLSESMTLAAQQKGVEVILDLAD---IHHPHVTSDPGRIRQVLTNIISNAIKFTEH 990
Query: 508 GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEF 567
G I V A +++A + N +
Sbjct: 991 GEIVVTA---------------------------------------KLSSADNNNNTI-L 1010
Query: 568 TFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDK 623
T ++ DTG GI K T+F+++ QV GGTGLGL I + L +L+GGDI +
Sbjct: 1011 TCQITDTGIGIEHSKIDTLFDSFSQVDASTTRKYGGTGLGLSITRRLCQLLGGDISVSST 1070
Query: 624 ENGERGTCFRFNVFLAIREASANDNNTQ 651
+G+CF L D NTQ
Sbjct: 1071 LG--KGSCFEITCLL--------DANTQ 1088
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 79/132 (59%), Gaps = 13/132 (9%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENG-EAALQLVRSGLNDQRDLGAPHILPYDY 1058
++L+ +D+ + + VA L +G ENG EA L+L S +Q+++ +
Sbjct: 1255 RVLLVEDNKVNQLVALKLLSKVGIDTVVAENGVEALLKLKES---EQKNV------LFTL 1305
Query: 1059 ILMDCEMPIMNGYEATRKIREEEK--RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
+LMDC+MP M+GYEAT++IR+ +NQ IPIIA+TA+ + K ++AGM+ ++ K
Sbjct: 1306 VLMDCQMPEMDGYEATKQIRKGSAGVQNQ-SIPIIAMTANAMQGDKQKCLDAGMNDYITK 1364
Query: 1117 PLNRDHLMEAIK 1128
P+ + ++ ++
Sbjct: 1365 PIEAEKVLNKLQ 1376
>gi|389874760|ref|YP_006374116.1| GAF sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
gi|388531940|gb|AFK57134.1| GAF sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
Length = 749
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 133/284 (46%), Gaps = 54/284 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A + AER S KS A SH++R L G+ G +L + G G ++ +
Sbjct: 224 AREAAERASFAKSRFLATMSHELRTPLNGVLGAAQLLLGDPGVGPGPRQRVQMIASAGRH 283
Query: 419 LLGLLNSILDTSKVEAGKMQLIEED-FDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLG++N +LD SK+EAGK++L D D+ LL V D+ P A KG+ ++ +D +
Sbjct: 284 LLGVINDVLDFSKIEAGKLELQPRDGVDLRGLLTVVSDVVAPQATAKGLVLI---TDAAA 340
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ D ++L+Q+L NLLSNAVKFT G + +R
Sbjct: 341 DLPHAIRADAMRLQQVLLNLLSNAVKFTPHGRVILR------------------------ 376
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
A+R E+ FEV D G GIP E+R +F+++ Q+ E
Sbjct: 377 --------------------ARRGEDGW-LCFEVQDDGPGIPPERRHLLFKDFSQLDEAA 415
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GTGLGL I L MGG +E+ D RG FRF V L
Sbjct: 416 SATAGTGLGLAISARLAAAMGGRLELDDSVT--RGALFRFEVAL 457
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LVADD M R V L+ LG VE E+G AL + G D +
Sbjct: 490 RVLVADDVEMNREVLAAMLKRLGCIVEKAEDGAEALAIAARG-------------GIDLV 536
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD MP+MNG EA R IR +PI+ALTA+ ++ EAGM+ ++ KP+
Sbjct: 537 LMDMRMPVMNGLEAARAIRGLTDPTLAGVPIVALTANAFDSAMEQCREAGMNDYMAKPVQ 596
Query: 1120 RDHLMEAIK 1128
L E ++
Sbjct: 597 LSELAEMLQ 605
>gi|431929976|ref|YP_007243022.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
gi|431828279|gb|AGA89392.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
Length = 750
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 131/268 (48%), Gaps = 50/268 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +QAE S KS AN SH+IR + G+ G++E+ + E L+ + A
Sbjct: 217 AKEQAEAASQAKSRFVANMSHEIRTPMNGMLGMLEMLS-QTRLNREQTAALQVVRRSAEG 275
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGS 476
LL +++ ILD SK+E+GK++L E FDV L E+V LF A KG+E+ PS
Sbjct: 276 LLTVIDDILDVSKIESGKLELEEIPFDVRGLTEEVATLFSASARSKGLELACFFAPSAP- 334
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD +L+QIL+NLL NA+KFT EG +++R
Sbjct: 335 ----AHVCGDPTRLRQILNNLLGNAIKFTHEGEVALR----------------------- 367
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+E A+ + N + FEV DTG G+ E +F + Q
Sbjct: 368 ---------------VEEAEASSPEANTVRLRFEVIDTGIGMSAEHMAHLFTPFHQADAS 412
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEI 620
GGTGLGL I ++L RLMGGDIE+
Sbjct: 413 TTRRFGGTGLGLAISKNLARLMGGDIEV 440
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 15/135 (11%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LRG+ +LV D+ + ++VA LR LG T + E G + S
Sbjct: 621 LRGRVLLVEDNPIN-QQVALGLLRRLGLTPDVAETGAQGIAQATSA-------------D 666
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
YD ILMD +MP M+GYE TR IR E ++ +PIIA+TA+ + ++ +EAGMD +L
Sbjct: 667 YDAILMDIQMPDMDGYETTRAIRAWEAVHHRRSVPIIAMTANTLEGDRERCLEAGMDDYL 726
Query: 1115 GKPLNRDHLMEAIKY 1129
KP+ E + +
Sbjct: 727 AKPVRLAGFAEVLGH 741
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G++ LV DD+ RRV LR+ G + L+ +R+ +++ + P
Sbjct: 471 LTGRRALVVDDNETNRRVVGYYLRNWGVVTQCAATAAEGLRQLRAAVDEGQ--------P 522
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D ++D EMP G++ R+IR + I ++ SG + + G + L
Sbjct: 523 FDVAILDLEMPDAEGFDLVRRIRTDSALAATRIMLLN-----SGGKTGLQDDLGGALVLA 577
Query: 1116 KPLN----RDHLMEAI 1127
KP+ RD L++A+
Sbjct: 578 KPIRQQLLRDALLQAL 593
>gi|372272319|ref|ZP_09508367.1| multi-sensor hybrid histidine kinase [Marinobacterium stanieri S30]
Length = 1153
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 51/286 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A Q+A + + KS AN SH+IR + GI G++EL ++A E + +R N
Sbjct: 482 VQARQEALQSTQAKSEFLANMSHEIRTPMNGILGMLELV-LDADLPPEQKDYIRIANSSG 540
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL LLNSILD SKVEAGKM+L DF++ E LE+ LF P A KG+E+ D S
Sbjct: 541 QTLLALLNSILDLSKVEAGKMELEHLDFNLRETLEETTKLFAPQAQGKGLEIAA-LIDDS 599
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V +++ GD +L+Q+++NLL NA+KFT +G I++
Sbjct: 600 VPEYA--NGDPTRLRQVITNLLGNAIKFTDQGEITL------------------------ 633
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
A + Q + + + DTG GI + ++ +FE + Q
Sbjct: 634 -----------------AADVTQEADQSWRLHIGIRDTGIGIAADAQERIFEGFTQADGS 676
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL + + + MGG I + + ++G+ F F L
Sbjct: 677 TTRRYGGTGLGLTLSRRIATRMGGQIWL--ESTLDQGSTFHFTARL 720
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 14/131 (10%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G +IL+A+D+ + R+VA +L G TV + +NG AL+ P+D
Sbjct: 885 GLRILLAEDNQVNRQVASTHLEKFGCTVVSAKNGAEALERFCQQ-------------PFD 931
Query: 1058 YILMDCEMPIMNGYEATRKIREEE-KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
+LMDC+MP+M+G EATR IR+ E ++ PIIA+TA S + AGMD +GK
Sbjct: 932 LVLMDCQMPVMDGLEATRAIRQREGEQGSDSTPIIAMTAFSSEQNLADCRAAGMDGKIGK 991
Query: 1117 PLNRDHLMEAI 1127
P + L + +
Sbjct: 992 PFRPEALYQLL 1002
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LRG + L+ DD + R + + G ++ ++G AL + +L A
Sbjct: 736 LRGLRALIVDDKVTNRVILQRFCDAWGIYHQSADSGVNALA--------KLELAAEQGKA 787
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D +L D MP M+G E R+I + + + +I T++ DK AG D L
Sbjct: 788 FDCVLSDMMMPDMDGVEVARQIHANAQLGDLKLLLI--TSYTGRGLRDKARLAGFDRLLP 845
Query: 1116 KPLNRDHLMEAIK 1128
KP+ R L +A++
Sbjct: 846 KPIGRRELHDALE 858
>gi|83717305|ref|YP_438343.1| two-component system sensor protein [Burkholderia thailandensis
E264]
gi|83651130|gb|ABC35194.1| two-component system sensor protein [Burkholderia thailandensis
E264]
Length = 952
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 148/296 (50%), Gaps = 53/296 (17%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
S +K EA +++ + KS A SH+IR L I G +EL + E L+
Sbjct: 454 SELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSNQQSE-RLQV 512
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
+ C+N LL ++N ILD SKVE+G+M L FD+ LL+++VD + P+A KG++++ +
Sbjct: 513 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKGLQLLSN 572
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
+G +S GD +++QILSNL+ NA+KFT GHISV
Sbjct: 573 LGEGVARYYS---GDPARIRQILSNLIGNAIKFTERGHISV------------------- 610
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
D+ AAQ D +A+E V+DTG GI ++ T+F+ Y
Sbjct: 611 -------------------DVHQAKAAQGD-SAIEIW--VNDTGIGIRPDRIATLFDVYT 648
Query: 592 Q----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
Q + GG+GLGL + + L +MGG IE+ + GT V L +REA
Sbjct: 649 QADTSIHRRFGGSGLGLPLCKRLATIMGGSIEV--DSLPDFGTT--VTVVLPLREA 700
Score = 42.0 bits (97), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 727 VLVAEDHPANRALLRDQLEALDHRVDVVENGRDAL----------RAFGEHQ---YDVVL 773
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++G+ + + IPI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 774 TDLGMPELDGF----GFAMFANKMRASIPIVAMTAHATAEDYRRSKKVGIAEIVLKPLS 828
>gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
Length = 962
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 140/283 (49%), Gaps = 56/283 (19%)
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN--LRQMNVCANDLLGLLN 424
S KS AN SH++R + G+ G+++L SEL+ + +R LL +LN
Sbjct: 568 SRTKSQFLANMSHELRTPMTGVLGMLDLALQST---SELQQSDYIRTAYRSGRSLLQILN 624
Query: 425 SILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVK 484
ILD SKVEAGK L ++ F + + + D+ P A RKG+E+ LD + L + V
Sbjct: 625 DILDLSKVEAGKFSLDQKPFSLRSCVTEAADIAAPEAKRKGIELELDLAQD--LPW-HVV 681
Query: 485 GDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYK 544
GD+V+L+Q+L+NL+ NAVKFT G ++V+ V +A
Sbjct: 682 GDQVRLRQVLTNLVGNAVKFTERGRVTVQVEVADKTA----------------------- 718
Query: 545 NKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGT 600
E + F V DTG GIP++KR +F+ + QV + GGT
Sbjct: 719 -----------------EAELLLRFRVSDTGIGIPQDKRHLLFQAFSQVDDSNTRNYGGT 761
Query: 601 GLGLGIVQSLVRLMGGDIEIVDKENGE-RGTCFRFNVFLAIRE 642
GLGL I + +V+ MGG+I E+GE G+ F F L I E
Sbjct: 762 GLGLAISKEIVQRMGGEIGF---ESGEGVGSTFTFTARLGIAE 801
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 13/131 (9%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G ++L+A+D +R+V L+ L V+ E+GE ++ R G YD
Sbjct: 839 GLRLLIAEDDATIRQVLAAMLQKLQFVVDFAEDGETVVEKWRQG-------------EYD 885
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
ILMD +MP ++G++ATR IRE+E+ IPIIA+TAH E+ + ++AGMD ++ KP
Sbjct: 886 LILMDVQMPRLDGFQATRAIREQEQEQGARIPIIAMTAHAMKEDQRRCLDAGMDDYISKP 945
Query: 1118 LNRDHLMEAIK 1128
+N +E +K
Sbjct: 946 INFKECIEKVK 956
>gi|392556351|ref|ZP_10303488.1| sensor protein [Pseudoalteromonas undina NCIMB 2128]
Length = 1101
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 149/289 (51%), Gaps = 57/289 (19%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC- 415
+EA AE+ ++ KS A SH+IR + G+ G++ L S E Q+++
Sbjct: 557 IEAKAAAEQANIAKSEFLAAMSHEIRTPMNGVLGMLNLIL----DSSLNEKQHHQVSIAL 612
Query: 416 --ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
AN LL ++N ILD SKV+AGK++L E +F++ +L+D ++ A K + ++LD
Sbjct: 613 NSANSLLNIINDILDFSKVDAGKLELEELEFNLCNMLDDFIETIAIHAHSKNIPLMLDIE 672
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
++++ V GD +LKQIL+NL++NA+KFT EG + V + K + I N
Sbjct: 673 H---IEYAFVIGDAGRLKQILTNLVNNALKFTHEGEVQV---IAKLTPINN--------- 717
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
N M F+ +V D+G GI ++ +F+++ QV
Sbjct: 718 -----------------------------NQMRFSCQVIDSGIGISAAQQAKLFKSFSQV 748
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL IV+ L LM GDI++ KEN +G+ F FNV L
Sbjct: 749 DSSTTRKYGGTGLGLAIVKKLCHLMEGDIQVQSKEN--KGSNFSFNVVL 795
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 83/139 (59%), Gaps = 16/139 (11%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+ +IL+ +D+ + + VA L+ +G +++ +NG+ AL+ ++ + P
Sbjct: 966 KNIRILLVEDNNINQIVASTTLKKIGINSIDIADNGQHALEYLKQTTSHN---------P 1016
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEE--KRNQVHIPIIALTAH-ISGEEADKTIEAGMDV 1112
Y ILMDC+MP+M+GY+AT IR E +N I IIA+TA+ + G+EA K ++ GM
Sbjct: 1017 YSLILMDCQMPVMDGYQATTHIRVNEVGSKNP-QITIIAMTANAMVGDEA-KCLQVGMSD 1074
Query: 1113 HLGKPLNRDHLMEA-IKYL 1130
++ KP+ +D L + +K+L
Sbjct: 1075 YISKPIAQDILFKKLLKWL 1093
>gi|402573332|ref|YP_006622675.1| PAS domain-containing protein [Desulfosporosinus meridiei DSM
13257]
gi|402254529|gb|AFQ44804.1| PAS domain S-box [Desulfosporosinus meridiei DSM 13257]
Length = 910
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 155/314 (49%), Gaps = 59/314 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVE-AGPGSELETNLRQMNVCA 416
+A + AE+ + KS AN SH+IR ++G+ G+ +L ++ G E+ + + C
Sbjct: 521 QAKEDAEKANKAKSQFLANMSHEIRTPMSGVLGMAQLLIMDLEGKQKEMA---KIIKTCG 577
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE--VVLDPSD 474
++LL ++N ILD S++EAGK+ L EDFD +L+E+V D+ P+A+RKG+ LD
Sbjct: 578 DNLLNIINDILDLSRIEAGKINLCLEDFDFRQLIEEVNDIIQPLALRKGLNYSFFLDNEI 637
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
S++ GD +LKQIL NLL NA+KFT G I +
Sbjct: 638 N-----SRLLGDTGRLKQILFNLLGNAIKFTEHGSIEL--------------------SI 672
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ-- 592
L+ C ++ ++ F + DTG GI ++K +F + Q
Sbjct: 673 LKGKVC---------------------KDRVQLLFSIKDTGMGIDEDKIGQLFTYFTQGD 711
Query: 593 --VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI-REASANDNN 649
V + GGTGLGL I + + +M G+I V+ + G G+ F F+V L R DN+
Sbjct: 712 DSVTKKYGGTGLGLAISKQFINMMNGEIS-VESQAG-VGSNFSFSVILTQSRNFERFDNH 769
Query: 650 TQGEKELAGGDSAA 663
+ K L S+A
Sbjct: 770 SPNAKALIPIYSSA 783
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
++A P+ +LV DD V+ + ++ L CE +L + +SG L
Sbjct: 773 AKALIPIYSSALLVEDDY-----VSGVLIKKL------CERKNISLMIAKSGTEAIETLK 821
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
+ +D ILMD +MP ++G+E T+ IR EK + H PIIA TA + +K + AG
Sbjct: 822 SQ---CFDLILMDIQMPDISGFETTKIIRATEKPLKKHTPIIATTAFALVGDREKCLSAG 878
Query: 1110 MDVHLGKPLNRDHLMEAI 1127
MD +L KP++ + + +
Sbjct: 879 MDDYLVKPIDAEEFYKIV 896
>gi|257059244|ref|YP_003137132.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
gi|256589410|gb|ACV00297.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
Length = 1611
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 49/282 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + A +++KS+ AN SH++R L I G +L + + + L+ +N
Sbjct: 1146 KAKETAIAANLSKSIFLANMSHELRTPLNAILGFTQLLGRDTSLSAYHQERLQIINRSGE 1205
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLGL++ ILD SK+E G++ L D D+ LL V ++ P A KG++++++ D ++
Sbjct: 1206 HLLGLIDDILDLSKIETGQIALFLTDCDLSGLLLTVEEMLSPKAESKGIKLIIEKDD-NL 1264
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ K+ D KL+QIL NLL+NA+KFT +G +++R
Sbjct: 1265 PRYIKI--DSKKLRQILINLLNNAIKFTHQGTVTLR------------------------ 1298
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
VN ++ D+ A+ F V+DTG GI ++ +F+ +VQ + G+
Sbjct: 1299 -----------------VNLSKIDQKAVIVKFIVEDTGVGIAADELDNLFQLFVQAEAGK 1341
Query: 598 G---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
G+GLGL I Q LV+LMGG IE+ N +G+ F F +
Sbjct: 1342 KINQGSGLGLAISQKLVQLMGGKIEVNSILN--QGSIFSFEI 1381
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D RR+ L +G V+ NG A+ + ++ PH+ I
Sbjct: 1411 QILVVEDVDENRRLLVELLASVGFQVKEASNGLEAVAISQTW--------HPHL-----I 1457
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD MP+M+GYEATR+I++ + P IIALTA + E+ + +EAG D + KP
Sbjct: 1458 WMDIRMPVMDGYEATRRIKQAALSQK---PVIIALTASVFEEQRETVLEAGCDDIVSKPF 1514
Query: 1119 N 1119
Sbjct: 1515 Q 1515
>gi|167614786|ref|ZP_02383421.1| two-component system sensor protein [Burkholderia thailandensis
Bt4]
gi|257141372|ref|ZP_05589634.1| two-component system sensor protein [Burkholderia thailandensis
E264]
Length = 987
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 147/294 (50%), Gaps = 53/294 (18%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
+K EA +++ + KS A SH+IR L I G +EL + E L+ +
Sbjct: 491 LKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSNQQSE-RLQVVE 549
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
C+N LL ++N ILD SKVE+G+M L FD+ LL+++VD + P+A KG++++ +
Sbjct: 550 SCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKGLQLLSNLG 609
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+G +S GD +++QILSNL+ NA+KFT GHISV
Sbjct: 610 EGVARYYS---GDPARIRQILSNLIGNAIKFTERGHISV--------------------- 645
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
D+ AAQ D +A+E V+DTG GI ++ T+F+ Y Q
Sbjct: 646 -----------------DVHQAKAAQGD-SAIEIW--VNDTGIGIRPDRIATLFDVYTQA 685
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ GG+GLGL + + L +MGG IE+ + GT V L +REA
Sbjct: 686 DTSIHRRFGGSGLGLPLCKRLATIMGGSIEV--DSLPDFGTT--VTVVLPLREA 735
Score = 42.0 bits (97), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 762 VLVAEDHPANRALLRDQLEALDHRVDVVENGRDAL----------RAFGEHQ---YDVVL 808
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++G+ + + IPI+A+TAH + E+ ++ + G+ + KPL+
Sbjct: 809 TDLGMPELDGF----GFAMFANKMRASIPIVAMTAHATAEDYRRSKKVGIAEIVLKPLS 863
>gi|254423560|ref|ZP_05037278.1| PAS fold family [Synechococcus sp. PCC 7335]
gi|196191049|gb|EDX86013.1| PAS fold family [Synechococcus sp. PCC 7335]
Length = 1070
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 147/282 (52%), Gaps = 19/282 (6%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS A SH++R L I G +L + E L +N LL L+N +L+T
Sbjct: 564 KSQFLAKMSHELRTPLNAILGFTQLLHYHETLSFEQRDRLNIINRSGEHLLSLINDVLET 623
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
S++EAG+++L E FD+ + +E + ++ A K + + ++ + V ++ V GD +K
Sbjct: 624 SRIEAGQLRLNESCFDLHQFIESIREMLTLRASNKNLLLKVNQTP-RVPQY--VWGDEIK 680
Query: 490 LKQILSNLLSNAVKFTSEGHISVR-ACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKA 548
L+Q++ NL+ NA+KFT+ G + +R +C+ S +G ++ L +
Sbjct: 681 LRQVIINLVGNAIKFTNNGEVRIRVSCL---SGMGKAPIAK-----LTEEQEEVLTEEVL 732
Query: 549 RGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE---GGTGLGLG 605
++E V+ ++ N FEV DTG GI E +FE + Q K G GTGLGL
Sbjct: 733 TNEIEGVSITEKVSNTACIQFEVSDTGCGIKSENFDAIFEPFKQTKAGRRAYEGTGLGLS 792
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
I + RLMGGDIE V + GE G+ F +V L +R +AND
Sbjct: 793 ISRQNARLMGGDIE-VHSQLGE-GSTFVCHVQLGLR--TAND 830
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R +ILV +D R++ L + V +G+ A+ L R P
Sbjct: 849 RDYRILVVEDVAENRQLLISLLTTICFEVCTANDGKEAVDLWRQW--------HP----- 895
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIP--IIALTAHISGEEADKTIEAGMDVHL 1114
D ILMD MP M+GY AT++IR E+ ++ P IIAL+A + + G D ++
Sbjct: 896 DCILMDLYMPRMDGYAATQQIRAEQAAIELTFPPAIIALSASVIDHFRSDLVSFGFDDYV 955
Query: 1115 GKPLNRDHLMEAI 1127
KP + ++E I
Sbjct: 956 SKPFQINVILEKI 968
>gi|307719098|ref|YP_003874630.1| two-component system sensor histidine kinase [Spirochaeta
thermophila DSM 6192]
gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta
thermophila DSM 6192]
Length = 776
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 141/287 (49%), Gaps = 51/287 (17%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
++A R +KS AN SH+IR L I G+ EL + E ++Q+ LL
Sbjct: 121 EEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLE-DTRLDEEQRDYVQQIRFSGEALL 179
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
L+N ILD SK+EAGK+ + +FD+ E++E V + A +K +EVV+D +
Sbjct: 180 ALINDILDYSKIEAGKLPMEIIEFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEEVP--- 236
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
KVKGD ++++QIL NL +NAVKFT +GH+ R
Sbjct: 237 RKVKGDPLRIRQILVNLANNAVKFTEKGHVFCR--------------------------- 269
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--- 597
V Q + F V+DTG GIP+ K+ +F + Q+ E
Sbjct: 270 --------------VQLVQERKGVAWVAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRR 315
Query: 598 -GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
GGTGLGL I +SLV +M G+I + KE GE G+ F F + L I E+
Sbjct: 316 FGGTGLGLAISKSLVEMMKGEIGVRSKE-GE-GSSFWFLLPLPIVES 360
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 17/128 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D ++ + + L LG VE NG+ A V GL L D I
Sbjct: 523 ILVAEDHIVNQELFLTILSRLGYRVELAGNGKEA---VEKGLA----------LKPDLIF 569
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP MNGY+A R +RE+ P+IA+TA E+ ++ + AGM L KP +
Sbjct: 570 MDVQMPEMNGYDAARVLREKGYEG----PVIAVTASAFREDRERALAAGMSDFLPKPFKK 625
Query: 1121 DHLMEAIK 1128
L+ ++
Sbjct: 626 KDLLPVLQ 633
>gi|167576610|ref|ZP_02369484.1| two-component system sensor protein [Burkholderia thailandensis
TXDOH]
Length = 926
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 148/296 (50%), Gaps = 53/296 (17%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
S +K EA +++ + KS A SH+IR L I G +EL + E L+
Sbjct: 428 SELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSNQQSE-RLQV 486
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
+ C+N LL ++N ILD SKVE+G+M L FD+ LL+++VD + P+A KG++++ +
Sbjct: 487 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKGLQLLSN 546
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
+G +S GD +++QILSNL+ NA+KFT GHISV
Sbjct: 547 LGEGVARYYS---GDPARIRQILSNLIGNAIKFTERGHISV------------------- 584
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
D+ AAQ D +A+E V+DTG GI ++ T+F+ Y
Sbjct: 585 -------------------DVHQAKAAQGD-SAIEIW--VNDTGIGIRPDRIATLFDVYT 622
Query: 592 Q----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
Q + GG+GLGL + + L +MGG IE+ + GT V L +REA
Sbjct: 623 QADTSIHRRFGGSGLGLPLCKRLATIMGGSIEV--DSLPDFGTT--VTVVLPLREA 674
Score = 41.6 bits (96), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL R G YD +L
Sbjct: 701 VLVAEDHPANRALLRDQLEALDHRVDVVENGRDAL----------RAFGEHQ---YDVVL 747
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
D MP ++G+ + + IPI+A+TAH + E+ + + G+ + KPL+
Sbjct: 748 TDLGMPELDGF----GFAMFANKMRASIPIVAMTAHATAEDYRRAKKVGIAEIVLKPLS 802
>gi|291566667|dbj|BAI88939.1| two-component hybrid histidine kinase [Arthrospira platensis
NIES-39]
Length = 1062
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 116/427 (27%), Positives = 185/427 (43%), Gaps = 88/427 (20%)
Query: 235 TRMTIVNDSISFQ------LITNTKTRAQQMNPV-KNVSCTSGNGTLSIG---------- 277
TR+ I + +FQ +I++T + Q K VS N +G
Sbjct: 445 TRIAIEQEKCAFQEINYRHVISDTYLQQNQGGIYGKGVSYRCVNDIYEMGFDACYLELLK 504
Query: 278 KIHYKAYC-----SQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISM 332
+ +AY S +++ G+ +VY PR + T++ + I +GV +
Sbjct: 505 QFQARAYIITPIFSGYQLWGLLAVYQNYHPR------IWTTAEIRTVTQIGSQLGVAVQQ 558
Query: 333 LTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLI 392
+ K+ AR+ +A + A+ + +KS AN SH++R L I G
Sbjct: 559 AELLAKTQEQARQ----------LQQAKEIADAANRSKSEFLANMSHELRTPLNAILGFA 608
Query: 393 ELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLED 452
+L E ++ +N LLGL+N IL+ S++EAG+ L FD+ E L+
Sbjct: 609 QLMSTNQNLAPENRQHIEIINRSGEHLLGLINDILEMSRIEAGRATLQVNGFDLYEFLQG 668
Query: 453 VVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISV 512
+ DLF A K + ++ + G + +K D KL+Q+L NLL NA+KFT EG ++V
Sbjct: 669 LEDLFKLRATSKNLHLIFERPKGLI---RHIKADEKKLRQVLINLLGNAIKFTDEGSVTV 725
Query: 513 RACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVD 572
R ++N+ A L+ FEV+
Sbjct: 726 RVS---------------------------HQNRDASDLLQ---------------FEVE 743
Query: 573 DTGKGIPKEKRKTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERG 629
DTG GI E + +FE + Q + G G+GLGL I Q V+LMG +I + N RG
Sbjct: 744 DTGLGIAPEDCEGLFEAFAQTETGLNASEGSGLGLAIAQQFVKLMGDEITVRSCLN--RG 801
Query: 630 TCFRFNV 636
+ F F +
Sbjct: 802 STFSFTI 808
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D R + L LG +V NG A+ + + P D I
Sbjct: 839 RILVVEDRESNRLLLVELLSVLGFSVRPANNGSEAIAIWQEW--------NP-----DLI 885
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP++NGYEATR+IR + + IIALTA E+ ++ G + L KP
Sbjct: 886 FMDMRMPVVNGYEATRQIRSQPGGGET--IIIALTASAFEEQRQDIMKVGCNDLLRKPFQ 943
Query: 1120 RDHLMEAI-KYL 1130
R L+ + +YL
Sbjct: 944 RGELLSKLSQYL 955
>gi|93006775|ref|YP_581212.1| GAF sensor hybrid histidine kinase [Psychrobacter cryohalolentis
K5]
gi|92394453|gb|ABE75728.1| GAF sensor hybrid histidine kinase [Psychrobacter cryohalolentis
K5]
Length = 603
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 152/310 (49%), Gaps = 35/310 (11%)
Query: 349 LCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN 408
+ A +K E + A+ + KS AN SH+IR + GI G++E+ + E
Sbjct: 169 MAADALKLQEQQRNAKYANEMKSAFLANMSHEIRTPMNGIIGMVEML-SDTMLSVEQREY 227
Query: 409 LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
+ + V LL ++N ILD SKVEAGKM + ++ L +VV LF A ++G +
Sbjct: 228 IENIKVSNEHLLAIINGILDLSKVEAGKMTIDSIPMNLSSLCNEVVSLFAIKARQRG--L 285
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
VLD L VKGD V+LKQ++ NL++NA+KFT EG R + NP L
Sbjct: 286 VLDYHYTESLS-PYVKGDPVRLKQVMVNLVNNAIKFTREGG---RVTIDVKHMQDNPCLD 341
Query: 529 SSRHGFLQSISCLFYK-NKKARGDLEAVNAAQRDENA------MEFTFEVDDTGKGIPKE 581
+ C K N +R D A D+N+ M EV DTG GI E
Sbjct: 342 NK--------DCDHAKGNNDSRLDF-----AIDDKNSTTIHQEMTLCIEVTDTGVGIKSE 388
Query: 582 KRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
+ +F+ Y Q + GGTGLGL + +SLV LMGG IE VD G GT FR V
Sbjct: 389 SLEAIFDAYDQANKYTHRLYGGTGLGLSVCKSLVELMGGYIE-VDSVVG-IGTTFR--VL 444
Query: 638 LAIREASAND 647
L + +A D
Sbjct: 445 LPLPCIAAED 454
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G +LV DDS+ +A+ L + G TV +G+ A+++ L +R
Sbjct: 473 LVGHILLVEDDSVN-AMIAKKALNNGGHTVTHVNDGQQAIEIF--ALYPER--------- 520
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD ILMD MPIM+G +AT K+ E + PIIALTA+ E K ++ GM +
Sbjct: 521 YDVILMDHHMPIMDGVQATIKLHELYAPQDLP-PIIALTANAMDGERKKYLDVGMQDYCT 579
Query: 1116 KPLNRDHLMEAIKY 1129
KP ++ L ++Y
Sbjct: 580 KPFKQEQLNALVQY 593
>gi|218246196|ref|YP_002371567.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
gi|218166674|gb|ACK65411.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
Length = 1578
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 49/282 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + A +++KS+ AN SH++R L I G +L + + + L+ +N
Sbjct: 1113 KAKETAIAANLSKSIFLANMSHELRTPLNAILGFTQLLGRDTSLSAYHQERLQIINRSGE 1172
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLGL++ ILD SK+E G++ L D D+ LL V ++ P A KG++++++ D ++
Sbjct: 1173 HLLGLIDDILDLSKIETGQIALFLTDCDLSGLLLTVEEMLSPKAESKGIKLIIEKDD-NL 1231
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ K+ D KL+QIL NLL+NA+KFT +G +++R
Sbjct: 1232 PRYIKI--DSKKLRQILINLLNNAIKFTHQGTVTLR------------------------ 1265
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
VN ++ D+ A+ F V+DTG GI ++ +F+ +VQ + G+
Sbjct: 1266 -----------------VNLSKIDQKAVIVKFIVEDTGVGIAADELDNLFQLFVQAEAGK 1308
Query: 598 G---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
G+GLGL I Q LV+LMGG IE+ N +G+ F F +
Sbjct: 1309 KINQGSGLGLAISQKLVQLMGGKIEVNSILN--QGSIFSFEI 1348
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D RR+ L +G V+ NG A+ + ++ PH+ I
Sbjct: 1378 QILVVEDVDENRRLLVELLASVGFQVKEASNGLEAVAISQTW--------HPHL-----I 1424
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD MP+M+GYEATR+I++ R + P IIALTA + E+ + + AG D + KP
Sbjct: 1425 WMDIRMPVMDGYEATRRIKQAALRQK---PVIIALTASVFEEQRETVLAAGCDDIVSKPF 1481
Query: 1119 N 1119
Sbjct: 1482 Q 1482
>gi|254429940|ref|ZP_05043647.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Alcanivorax sp. DG881]
gi|196196109|gb|EDX91068.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Alcanivorax sp. DG881]
Length = 846
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 137/286 (47%), Gaps = 61/286 (21%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
A +S K L A SH+IR L G+ GL EL E P + + ++ L L
Sbjct: 342 ARAESQAKGLFLARMSHEIRTPLNGVIGLAELLR-ETDPSPRQQEYISLIDSAGRTLTAL 400
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-----PSDGSV 477
+N +LD +K+EAGK++L+EE FD+ LL + V +F+ A G V+LD PSD
Sbjct: 401 INDVLDFAKIEAGKLELVEERFDLPTLLAECVQMFNLPASDNGTLVILDVDPHTPSD--- 457
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
V GD ++L+QIL NL+ NAVKFT G + + SL RHG
Sbjct: 458 -----VVGDAIRLRQILINLIGNAVKFTRNGRVVL-------------SLVCRRHG---- 495
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
G++ FTF V DTG G+ ++++ +F+ + Q
Sbjct: 496 ------------GEVPL------------FTFAVTDTGIGLTQDEQTQLFQRFTQASANT 531
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL I + LV LMGG+I + G+ F F++ +A
Sbjct: 532 ARRYGGTGLGLSISRELVGLMGGEIHVHSAPG--LGSRFSFSIQMA 575
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 1057 DYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +LMD +MP+M+G+ + IRE E + ++AL+AH E+ + AGM+ L
Sbjct: 767 DLVLMDLDMPVMDGFTSAHHIRELEAQHGWAPCQVLALSAHAISEQGGRVSRAGMNGQLI 826
Query: 1116 KPLNRDHLMEAI-KYL 1130
KPL+ + +A+ +YL
Sbjct: 827 KPLSLAAMKQALSQYL 842
>gi|86137029|ref|ZP_01055607.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
gi|85826353|gb|EAQ46550.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
Length = 782
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 143/290 (49%), Gaps = 50/290 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE + KS AN SH+IR + G+ G+ EL + E + +
Sbjct: 210 ARERAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLN-DTTLSDEQKLYANTIKNSGEA 268
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N +LD SK+EA K+ L EE FD+ + ++V L P A KG+ +++ D +
Sbjct: 269 LLVIINDVLDYSKIEADKLVLHEEVFDLERCIHEIVMLLQPTARDKGLTILV---DYDLF 325
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
++ GD +++Q+L+NL NAVKFT+EGH+++R + I NP + ++
Sbjct: 326 LPTQFVGDPGRIRQVLTNLAGNAVKFTNEGHVTLRV-----TGISNPEEGTC------AV 374
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG 598
C+ ++DTG GIP EK VF + QV++
Sbjct: 375 HCM-----------------------------IEDTGIGIPVEKIDHVFGEFNQVEDERN 405
Query: 599 ----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GTGLGL I + L+ LM G+I + E +G+CF F + L I E S
Sbjct: 406 RKFEGTGLGLAISRRLIELMKGEIWVESDEG--KGSCFGFRIPLPIVEGS 453
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R +IL A+D+ + V ++ L ++ NG A+ L +S
Sbjct: 648 RQMRILAAEDNRTNQLVFRKMVKDLNIELQFANNGVEAVALYQS-------------FEP 694
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D + MD MP M+G EAT +IR+ E H+PI+ALTAH ++D + AG+D +L K
Sbjct: 695 DLVFMDISMPEMDGKEATGEIRKLEALTGRHVPIVALTAHAMTGDSDGILAAGLDHYLTK 754
Query: 1117 PLNRDHLMEAI 1127
PL + ++E I
Sbjct: 755 PLRKAVILERI 765
>gi|410465120|ref|ZP_11318485.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409981762|gb|EKO38286.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 919
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 144/286 (50%), Gaps = 56/286 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +QAE S KS AN SH+IR L+GI GL ++ + P E+ NL + +
Sbjct: 417 ARRQAEAASQAKSGFLANMSHEIRTPLSGIIGLTQMTLTQ-NPRPEIRENLELILDSSRS 475
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE--VVLDPSDGS 476
LLG++N ILD SK+EAGKM+ + DFD + L+ + F A +KG+ V +DP +
Sbjct: 476 LLGIVNDILDFSKIEAGKMEFVPVDFDPRDTLDRTMKSFQFSARQKGLTLGVRIDPQVPA 535
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++ Q++ NL+ NA+KFT +G + V + +P G+P L
Sbjct: 536 M-----VHGDPDRVMQVVRNLVGNALKFTDQGEVEVTLSLARP---GDPML--------- 578
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+SC V DTG GIP+++ +F+ + Q++
Sbjct: 579 -VSC-----------------------------SVRDTGIGIPEDRLHELFQVFSQLEST 608
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + LV +MGG I+ V+ G+ G+ F F V L
Sbjct: 609 RAKRYGGTGLGLAISRRLVEMMGGAID-VESVPGQ-GSTFTFTVSL 652
Score = 63.9 bits (154), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 14/132 (10%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G ++L+A+D+ + R + L G V +G AL+L+ P D
Sbjct: 676 GLRVLLAEDNQVNRLFLKHFLAEAGCQVRLAGSGLQALELLCQE-------------PAD 722
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDVHLGK 1116
+LMD +MP M+G EATR+IRE E +P++ALTA+ + ++ + G+D ++ K
Sbjct: 723 LVLMDIQMPEMDGAEATRRIREGEAGEAARGMPVVALTAYSMKGDRERFLSVGLDDYVSK 782
Query: 1117 PLNRDHLMEAIK 1128
P++ D L ++
Sbjct: 783 PVDVDELFMVMR 794
>gi|126661522|ref|ZP_01732570.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
gi|126617188|gb|EAZ88009.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
Length = 611
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 148/281 (52%), Gaps = 36/281 (12%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE + KS AN SH++R L I G ++ + E + N+ + +
Sbjct: 128 AKEKAEVANEAKSAFIANMSHELRTPLNAILGFSQIMKRSSTLSQEEKENINIIGRSGDY 187
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N+ILD +K+EAGKM L DFD+ L++V DL H A KG+++ ++ D V
Sbjct: 188 LLTLINNILDLAKIEAGKMTLNPCDFDLYSCLQEVEDLLHLKANNKGLKLEIN-HDQDVP 246
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
++ + D KL+Q+L NL++NA+KFTSEG + V+ +PS I + +L++
Sbjct: 247 QY--INTDETKLRQVLINLINNAIKFTSEGGVFVQ-VRNQPSDIKDSNLNN--------- 294
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG 598
+ K+ + + +N V DTG GI + +FE + Q + G+
Sbjct: 295 ------DSKSLTNNDYINIT------------VQDTGVGIAAGELDKLFEAFAQTESGKK 336
Query: 599 ---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GTGLGL I + V+LMGGDI + + E GT F FN+
Sbjct: 337 SSEGTGLGLAISRKFVQLMGGDITVTTE--VESGTTFSFNI 375
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KIL+ DD R + L+ +G ++ NG+ A++ + + PH+ I
Sbjct: 405 KILIVDDHPANRLLLIKLLQPVGFELQQATNGQEAIE--------KWETWQPHL-----I 451
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+M+GYEAT+ I+ K N I+ALTA EE + AG D + KP
Sbjct: 452 FMDMRMPVMDGYEATQYIKGIIKGNAT--AIVALTASFLEEEKAIVLSAGCDDFIRKPFQ 509
Query: 1120 RDHLMEAI 1127
+ + I
Sbjct: 510 ESVIFDVI 517
>gi|428770660|ref|YP_007162450.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428684939|gb|AFZ54406.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 1244
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 156/324 (48%), Gaps = 70/324 (21%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A +QA+ S K+ A+ SH+IR + GI G+ EL ++ SE + + +N +
Sbjct: 720 LKAEKQAKEASEAKTEFLASMSHEIRTPMNGIIGMTEL-LLDTQLNSEQKNFVEIINHSS 778
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL--DPSD 474
N LL ++N ILD SK+E+ K+ L F++ E LE V+ L A +KG+ ++ +P D
Sbjct: 779 NTLLTIINDILDLSKIESKKIDLESTTFNIHECLESVISLMELQAEKKGINLIYIANPQD 838
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
KGD +L+Q++ NL+SNAVKFT +G + VR
Sbjct: 839 NYWF-----KGDVTRLRQVVLNLVSNAVKFTHQGEVIVR--------------------- 872
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+N A ++ ++ V+DTG GIP+++R+++F+ + QV
Sbjct: 873 --------------------LNVASQELDSCYLKIIVEDTGIGIPQDRRESIFQAFSQVD 912
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
GGTGLGL I + LV LMGG + + + G +F V L + + ND N
Sbjct: 913 ASTTRQYGGTGLGLTIARKLVELMGGSLTV----SSIVGKGSKFCVSLTLEK--TNDEND 966
Query: 651 Q-----------GEKELAGGDSAA 663
Q G+K L DS+
Sbjct: 967 QYLSLKQQNHLRGKKALIIADSSV 990
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 17/130 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
IL+ +D+++ ++VA + L LG +E NG A++++++ Y I
Sbjct: 1120 ILLVEDNLVNQKVARLMLNKLGYRWIEIANNGLEAIKMIQNK-------------TYQLI 1166
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD +MP+++G T++IR+ NQ+ P IIA+TA + D +E GM+ +L KP+
Sbjct: 1167 FMDMQMPLLDGVATTKEIRK--LGNQIQQPWIIAMTASALSTDRDSCLEIGMNDYLSKPV 1224
Query: 1119 NRDHLMEAIK 1128
D +++A+K
Sbjct: 1225 KSDTIIQALK 1234
>gi|89093662|ref|ZP_01166609.1| histidine kinase response regulator hybrid protein [Neptuniibacter
caesariensis]
gi|89082058|gb|EAR61283.1| histidine kinase response regulator hybrid protein [Oceanospirillum
sp. MED92]
Length = 670
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 155/311 (49%), Gaps = 61/311 (19%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ-M 412
IKQ+E+ Q KS+ +N SH+IR + G+ GLI+L P ++ + Q +
Sbjct: 164 IKQLESANQY------KSIFVSNVSHEIRTPMNGVMGLIDLLL--ETPLNDKQLRYAQAI 215
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
+ LL ++N +LD SKVEAGK+ + + +F++GE+++D+ + F P+A K +E+ D
Sbjct: 216 KRSGDSLLRVINDVLDLSKVEAGKLTIEKAEFNLGEVVDDLTECFSPLATEKKLELRTDI 275
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
LK + GD +LKQIL+NLLSNA+KFT +G ++R V
Sbjct: 276 Q----LKSDRFIGDHYRLKQILNNLLSNAIKFTDKGWTALRIKV---------------- 315
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
++ D+ A F V DTG G+ ++++ +F+ + Q
Sbjct: 316 ------------------------VSETDDQAT-LKFSVSDTGLGLSEKQQSQLFKRFQQ 350
Query: 593 VKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL-AIREASAND 647
E GG+GLGL I + L+ LM GDI + K +G+ F F + L +RE A +
Sbjct: 351 ANETITREFGGSGLGLSICKQLLALMDGDIGV--KSEPGKGSTFWFTLPLQVVREEPAVE 408
Query: 648 NNTQGEKELAG 658
T+ AG
Sbjct: 409 ELTETPDNFAG 419
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 19/135 (14%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+LV +D+ + + VA+ L LG VE ENG + +R YD +
Sbjct: 420 KVLVVEDNRVNQIVAKGVLEKLGLEVELAENGAVGMTKLRDNY-------------YDLV 466
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVH---IPIIALTAHISGEEADKTIEAGMDVHLGK 1116
MDC MP+M+G+EAT+ IR + VH IPIIA++A+ + ++ E GMD K
Sbjct: 467 FMDCHMPVMSGFEATKGIR--SPNSLVHNPGIPIIAMSANAMDTDIEQCYEVGMDGFTAK 524
Query: 1117 PLNRDHLMEAI-KYL 1130
PL R+ + E + KYL
Sbjct: 525 PLEREKIKEVLSKYL 539
>gi|452979733|gb|EME79495.1| hypothetical protein MYCFIDRAFT_142314, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1153
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 133/268 (49%), Gaps = 52/268 (19%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS---ELETNLRQMNVCANDL 419
A+ S KS AN SH+IR +AG+ G+ EL ++ GPG E + AN L
Sbjct: 704 AKEASKMKSQFLANMSHEIRTPIAGVIGMSELL-LDDGPGDLTPEQRECAENIQRSANGL 762
Query: 420 LGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLK 479
L ++N ILD SKVE+G++ + E FD+ ++ DV + A RKG+ + D LK
Sbjct: 763 LTVINDILDFSKVESGRLDIEEVQFDLSVVIRDVNKMLSFAAERKGLRYI---DDIQRLK 819
Query: 480 FSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSIS 539
+V GD +L+Q+++NLL+N++KFTSEG +++R
Sbjct: 820 NWRVLGDPGRLRQVMTNLLTNSIKFTSEGSVTMR-------------------------- 853
Query: 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE-- 597
V A + E +E F V+DTG GI +E R+ +F+ + Q
Sbjct: 854 ---------------VKAQKETEEMVEVHFTVEDTGIGIEEEVRRKLFKPFSQADSSTAR 898
Query: 598 --GGTGLGLGIVQSLVRLMGGDIEIVDK 623
GGTGLGL I ++LV LM G I + K
Sbjct: 899 RFGGTGLGLTISKNLVELMRGGISLQSK 926
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LV +D+ + +++A +R LG V A NG+ AL + + +Q P D IL
Sbjct: 1022 VLVVEDNAVNQQIALKTIRKLGFPVRAVWNGQEALDYLATPSEEQ-----PRP---DIIL 1073
Query: 1061 MDCEMPIMNGYEATRKIREEE---KRNQVH-IPIIALTAHISGEEADKTIEAGMDVHLGK 1116
MD +MPIM+GY+AT +R + +V IPI+A+TA + +K +AGMD +L K
Sbjct: 1074 MDVQMPIMDGYKATYTVRNGKPFVNNPEVQSIPIVAMTASAIQGDREKCQDAGMDDYLSK 1133
Query: 1117 PLNRDHLMEAI 1127
P+ + +L I
Sbjct: 1134 PVKKPNLERMI 1144
>gi|428206662|ref|YP_007091015.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
gi|428008583|gb|AFY87146.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
Length = 951
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 153/310 (49%), Gaps = 23/310 (7%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R ++ L + I A + AE + KS AN SH++R L I G +L
Sbjct: 431 RVQQRTRELNEAKIAAETAKETAEAANQAKSEFLANMSHELRTPLNAILGFAQLMQRSRT 490
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
E + N+ +N LL L+N +LD SK+EAG++ L ++FD+ +L V ++F
Sbjct: 491 LTLEQQENVSIINRSGEHLLALINDVLDMSKIEAGRLTLHPQEFDLYLMLNAVEEMFQLK 550
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACV-KKP 519
A G++++ D V ++ +K D KL+QIL NL+ NA+KFTS G ++VR +
Sbjct: 551 ADSLGLQLICD-RHPDVPRY--IKSDEKKLRQILINLIGNALKFTSHGSVTVRVIAGSRD 607
Query: 520 SAIGNPSL-SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
G S S R G + + Y+ L N + TF V DTG GI
Sbjct: 608 DEQGAGSRGESGRRGVITN-----YQLPITNYQLPITN--------YQLTFTVQDTGVGI 654
Query: 579 PKEKRKTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
E+ +F+ +VQ + G + GTGLGL I Q V+LMGG+I + + GT F F
Sbjct: 655 AAEELGRLFQAFVQTETGRKSQQGTGLGLAISQKFVQLMGGEISVSSRIG--VGTQFEFT 712
Query: 636 VFLAIREASA 645
+ + + + S+
Sbjct: 713 IPVQLADPSS 722
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD R++ L +G V ENG+ A+ + S PH+ I
Sbjct: 743 RILVVDDRPENRQIVIKLLTPIGFEVREAENGKDAIAVWSSW--------EPHL-----I 789
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+MNGYE T I+ K Q I IIALTA EE + G D + KP
Sbjct: 790 WMDMRMPVMNGYETTEYIKSHLK-GQATI-IIALTASTLEEEKAVVLSTGCDDFMRKPFR 847
Query: 1120 RDHLMEAI 1127
+ L E +
Sbjct: 848 AEELFEKM 855
>gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus
degradans 2-40]
gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
2-40]
Length = 765
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 145/303 (47%), Gaps = 55/303 (18%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
Q+AE + KS A SH+IR + G+ G++E+ S+ L + + L+
Sbjct: 244 QEAEAANRAKSQFIATMSHEIRTPMNGVIGMVEMLRDTTLDDSQ-RHYLGIIERSGDSLM 302
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
++N ILD SK+EAGKM L FD+ ELLED V +F ++ +E++ S +
Sbjct: 303 NIINDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNIELICSISPNTP--- 359
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
++ GD +LKQ+L NL+ NA KFTSEGHI V A
Sbjct: 360 KQLMGDPTRLKQVLVNLIGNAFKFTSEGHIYVEA-------------------------- 393
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--- 597
VNA+ D + F+ V+D+G GI +++ +F+ + Q
Sbjct: 394 ------------RQVNASDADLPMIHFS--VEDSGIGIESNQQEKLFDAFCQADGSTTRK 439
Query: 598 -GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN-VFLAIREASANDNNTQGEKE 655
GGTGLGL I + L +MGG+I + +E G+ F F+ VF + +A N Q +
Sbjct: 440 FGGTGLGLTICKQLAEMMGGEIGVYSREKA--GSTFWFSAVFTHVEKAI----NEQPPQS 493
Query: 656 LAG 658
LAG
Sbjct: 494 LAG 496
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 75/148 (50%), Gaps = 13/148 (8%)
Query: 982 IEEEDGERSQAQKPLRGK-KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRS 1040
+ EE +QA G +LVA+D+ + R V E L + E+G AL V
Sbjct: 618 VVEEQKTNTQATTVSEGPLHVLVAEDNPVNRMVIEGLLAKFDIAPKFAEDGLQALNAVTE 677
Query: 1041 GLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISG 1099
PYD I+MDCEMP M+G+EATR IR E NQ IIALTAH+
Sbjct: 678 SPT-----------PYDLIIMDCEMPEMDGFEATRSIRTWESNNNQPATTIIALTAHVEA 726
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
E + ++GM+ +L KP+ + L EA+
Sbjct: 727 EHRQRVFDSGMNYYLSKPVTMEKLSEAL 754
>gi|288871335|ref|ZP_06117244.2| sensory box histidine kinase/response regulator [Clostridium
hathewayi DSM 13479]
gi|288863842|gb|EFC96140.1| sensory box histidine kinase/response regulator [Clostridium
hathewayi DSM 13479]
Length = 894
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 182/404 (45%), Gaps = 76/404 (18%)
Query: 291 AGVKSVYALAMPRKG-----LVSLVHRTSKRALILLIVMTVGV--------LISMLTFVF 337
G VY MP +G + S+ + T ++ L GV +++TF
Sbjct: 287 VGTHHVYLYYMPIQGTDWYMVTSMSYETVNNQIVYLSQFMAGVGAGIFFVVFATVITFFL 346
Query: 338 KSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYV 397
R+ ++ L ++E ++AE S KS + SH+IR L GI G++EL
Sbjct: 347 LFRRSEKRSNELL-----RLEK-ERAEAASRAKSDFLSQMSHEIRTPLNGIMGMVELGKN 400
Query: 398 EAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLF 457
+ L ++ + LL L+N ILD SK+E+GK++L E FD+G+LL + +F
Sbjct: 401 HIDEPGRMRNCLDKITFSSTHLLSLINDILDMSKIESGKIELHPELFDLGKLLRALTTVF 460
Query: 458 HPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFT-SEGHISVRACV 516
H A+ + ++ + G V ++ + GD ++L QIL+NLLSNAVKFT ++G +++
Sbjct: 461 HVQAINRQIDFQIFLR-GEVTEY--LVGDALRLNQILTNLLSNAVKFTPAQGSVNLN--- 514
Query: 517 KKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGK 576
+ +RD++ + FEV DTG+
Sbjct: 515 --------------------------------------IETLRRDDHRIWLRFEVKDTGR 536
Query: 577 GIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GI E +FE + Q G GGTGLGL I +S +MGG I + + E GT
Sbjct: 537 GIAPENIHRIFEPFTQENSGIARNYGGTGLGLPITRSFTEMMGGSITV----SSEVGTGS 592
Query: 633 RFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHM--NLT 674
F V L A D+ + + G S Q++ + NLT
Sbjct: 593 VFTVDLPFD--CAPDDVYKDAQPCGSGQSVLVVNQIEELKNNLT 634
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 983 EEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV---R 1039
+ +D + + L GK++L+A+D+ + +A L+ GA V + +NG+ A++ R
Sbjct: 740 QNQDQTKPEQSAVLAGKQVLLAEDNEINLEIAAALLQDAGAIVTSTQNGQEAVERFSEAR 799
Query: 1040 SGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG 1099
G YD ILMD +MP+M+G A + IR + + IIA+TA+
Sbjct: 800 EGF-------------YDLILMDIQMPVMDGCSAAQAIRALPRSDAKCTIIIAMTANSFR 846
Query: 1100 EEADKTIEAGMDVHLGKPL 1118
E+ K +++GM+ H+ KP
Sbjct: 847 EDIQKCLDSGMNAHIAKPF 865
>gi|153872278|ref|ZP_02001216.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
gi|152071255|gb|EDN68783.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
Length = 623
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 153/305 (50%), Gaps = 47/305 (15%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I+ + A + AE + +KSL AN SH++R + I G +L + S + NLR +
Sbjct: 333 IELISAKKVAETANQSKSLFLANMSHELRTPMNAILGFSQLMERDQAITSTQQNNLRIIQ 392
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
LL L+N +LD SK+E+G+M L E D+ + L+D+ D+ H A K + +
Sbjct: 393 RSGEHLLSLINDVLDMSKIESGRMTLETESCDLPQTLKDIADMIHIRAKNKNLLFTWE-Y 451
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D + + +K D KL+QIL NLL NA+K+T EG +S+R K+ + + S+S
Sbjct: 452 DPKLAHY--IKTDVGKLRQILINLLGNAIKYTHEGGLSLRVHSKEMA-----TTSASEKP 504
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+ + EV+D+G GI E+ +F+ +VQV
Sbjct: 505 YQHRVYV-----------------------------EVEDSGAGIGPEEVDKIFDAFVQV 535
Query: 594 KEGEG---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN---- 646
+G GTGLGL I + +++MGGDI ++ E G +G+ F+F++ + + E +
Sbjct: 536 SSSKGISEGTGLGLSITRRYIQMMGGDIRVMS-ELG-KGSLFKFDIPVELAEEKISSPIN 593
Query: 647 -DNNT 650
DNN
Sbjct: 594 TDNNV 598
>gi|359454681|ref|ZP_09243954.1| sensor protein [Pseudoalteromonas sp. BSi20495]
gi|358048281|dbj|GAA80203.1| sensor protein [Pseudoalteromonas sp. BSi20495]
Length = 1098
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 152/287 (52%), Gaps = 53/287 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV-C 415
+EA AE+ ++ KS A+ SH+IR + G+ G+ L ++ P +E + ++ +
Sbjct: 557 IEAKALAEQANIAKSEFLASMSHEIRTPMNGVLGM--LNFILDSPLNEKQQYQTRIALNS 614
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
AN LL ++N ILD SKV+AGK++L E +F++ +L D ++ A KG+E++LD +D
Sbjct: 615 ANSLLNIINDILDFSKVDAGKLELEELEFNLHAMLGDFLETVAAQAYSKGIELILDITD- 673
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+K+ V GD +L+QIL+NL++NA+KFT G +
Sbjct: 674 --IKYPFVIGDPGRLRQILTNLVNNALKFTHVGEV------------------------- 706
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
Q I+ L N N + F +V DTG GIP E++ +F+++ QV
Sbjct: 707 QIIAKLIPTNG----------------NEIRFNCQVKDTGIGIPVEQQAKLFKSFSQVDS 750
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL IV+ L LM G++E+ EN +G+ F F++ L
Sbjct: 751 STTRKYGGTGLGLAIVKKLCNLMQGEVEVKSDEN--KGSNFIFDITL 795
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 83/134 (61%), Gaps = 12/134 (8%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+IL+A+D+ + + VA L+ +G + V+ NG+ L + DQ++ I PY
Sbjct: 969 RILLAEDNQINQIVAATTLKKMGISVVDIATNGKEVLDYL-----DQKN----TIEPYSL 1019
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
ILMDC+MP+M+GY+AT IR E R++ + I IIA+TA+ + K +++GMD ++ KP
Sbjct: 1020 ILMDCQMPVMDGYQATTLIRNNEARDKANAITIIAMTANAMTGDKTKCLDSGMDDYISKP 1079
Query: 1118 LNRDHLMEA-IKYL 1130
+ +D L E +K+L
Sbjct: 1080 IAQDILFEKLLKWL 1093
>gi|414079219|ref|YP_007000643.1| multi-sensor hybrid histidine kinase [Anabaena sp. 90]
gi|413972498|gb|AFW96586.1| multi-sensor hybrid histidine kinase [Anabaena sp. 90]
Length = 1311
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 145/295 (49%), Gaps = 53/295 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q+AE KS AN SH+IR + G+ G+ L +E E + L + +
Sbjct: 767 ARQEAESALQAKSSFLANMSHEIRTPMNGVLGMTSL-LLETPLNPEQQDFLETVRTSGDA 825
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV-VLDPSDGSV 477
LL L+N ILD SK+EAGKM L DF++ +++V++L P A KG+E+ L P+D +
Sbjct: 826 LLSLINEILDLSKLEAGKMMLETLDFNLSTCIQEVIELLAPQAHDKGLEIAALIPADVPI 885
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++GD +L+Q++ NL+ N +KFTS+G + V+
Sbjct: 886 Y----IQGDASRLRQVIMNLMGNGIKFTSQGKVIVQ------------------------ 917
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG- 596
LE + ++ D+ A F + DTG GI E + +F+ + QV
Sbjct: 918 --------------LELI--SETDDTAT-IQFAIIDTGIGITTEDKNNLFQPFTQVDASI 960
Query: 597 ---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
GGTGLGL I Q LV LMGG I + + E G +G+ F FN+ + S + N
Sbjct: 961 TRKYGGTGLGLAICQQLVTLMGGKIGL-NSEIG-KGSKFWFNLSFTKQPESVSQN 1013
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 22/130 (16%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+L+A+D+++ ++V L++LG +A NG+ L+L+ + YD I
Sbjct: 1173 KLLLAEDNLVNQKVFLKQLQNLGYQADAVANGQEVLELLDK-------------IAYDLI 1219
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIP------IIALTAHISGEEADKTIEAGMDVH 1113
MDC+MPI++G AT++IR +R P +IA+TA+ E+ ++AGMD +
Sbjct: 1220 FMDCQMPILDGLAATKEIR---RRPLSSFPKHQQPVVIAITANAMKEDQKICLDAGMDDY 1276
Query: 1114 LGKPLNRDHL 1123
L KP+ +D L
Sbjct: 1277 LSKPVAKDKL 1286
Score = 44.7 bits (104), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQ--KPLRGKKILVADDSMMLRRVAEINLRHLGATVEAC 1028
G+GS + ++ SQ Q + L +++LV +++ + R + G ++
Sbjct: 992 GKGSKFWFNLSFTKQPESVSQNQDYQILSQRRLLVVNNNTISREILHHQAISWGMHIDEV 1051
Query: 1029 ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHI 1088
++ A L + + Q +PYD ++D +MP ++G +IR+ ++
Sbjct: 1052 DSAIAGLAALETAATQQ--------MPYDIAIIDMQMPEIDGLTLGIQIRKNPAI--ANV 1101
Query: 1089 PIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
P+I LT +E K ++ G +L KP+ L++ I
Sbjct: 1102 PLIMLTCTNQRDEVKKALDIGFISYLVKPIKPTRLLDTI 1140
>gi|421095142|ref|ZP_15555855.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii str.
200801926]
gi|410361852|gb|EKP12892.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii str.
200801926]
Length = 822
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 163/334 (48%), Gaps = 63/334 (18%)
Query: 337 FKSARAARKEMHLCASLIKQ------------MEATQQAERKSMNKSLAFANASHDIRAA 384
FK + E+H L+K+ ++A + AE+ S KS AN SH+IR
Sbjct: 392 FKLKEGLQSEIHKNIILLKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIRTP 451
Query: 385 LAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDF 444
+ G+ G+++L E + ++ +++ A LL ++N ILD SK+EAGK+ L +E F
Sbjct: 452 MNGVLGMVQLLGT-TKLNDEQKEYIQILSISAKSLLQIINDILDFSKIEAGKISLDKEVF 510
Query: 445 DVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKF 504
+ +L+++ DL +P+A +K + + L+ D S ++ V GD+++L+QIL NL N +KF
Sbjct: 511 SIHSVLDEIHDLLYPLAKQKRIGLRLE--DKSEIQ-EYVYGDQLRLRQILWNLTGNGIKF 567
Query: 505 TSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENA 564
T+ G + + K S +D+ +
Sbjct: 568 TNHGEVVLNVSQKNIS---------------------------------------KDKIS 588
Query: 565 MEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
++FT V D+G GIP EK+K VF+ + Q GG+GLGL I + LV L GG + +
Sbjct: 589 IKFT--VSDSGIGIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQLVELQGGTLNL 646
Query: 621 VDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
KE+ G+ F F + I S + + EK
Sbjct: 647 ESKES--YGSKFTFTITYDIPSESEIEKILEAEK 678
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + + KILVA+D+ + E L+ LG NG ++ +
Sbjct: 680 KDLESAYSNATSKSMKILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIEKM------ 733
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
Q D +D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 734 QLDF-------FDMILMDIHMPEVDGIEATKWIRSQKQNTEFPI-IIALTADVIESNKEV 785
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ +L KPL+ L + + +
Sbjct: 786 YISKGMNDYLTKPLDLPLLKKTLDF 810
>gi|333998356|ref|YP_004530968.1| putative multi-sensor hybrid histidine kinase [Treponema primitia
ZAS-2]
gi|333740527|gb|AEF86017.1| putative multi-sensor hybrid histidine kinase [Treponema primitia
ZAS-2]
Length = 1516
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 164/337 (48%), Gaps = 64/337 (18%)
Query: 307 VSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQME-ATQQAER 365
++++ + R ++LI + V + M F K+A A R +M + ++E A +QAE+
Sbjct: 751 LAILEYLAVRIFLVLIAAAILVAVGMAIFQVKNA-AERIQM------VNELENAMRQAEQ 803
Query: 366 KSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNS 425
+ +KS AN SH+IR + I G+ EL E G ++ + + +LL ++N
Sbjct: 804 ANKSKSEFLANMSHEIRTPMNAIIGISELVLREETAG-RVKDYINDIKQAGYNLLSIIND 862
Query: 426 ILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV--EVVLDPSDGSVLKFSKV 483
ILD SK+EAGK+Q++ + + LL DV+ + K + V +DP L +
Sbjct: 863 ILDFSKIEAGKIQILSAPYRLSSLLNDVITIIRIRVSEKPIIFMVNVDP-----LLPDNL 917
Query: 484 KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFY 543
GD +++QIL NLLSNA K+T EGHI ++S R+G L
Sbjct: 918 TGDEARMRQILLNLLSNAAKYTKEGHIQF-------------TVSGERNGEL-------- 956
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV----KEGEGG 599
+ FE+ D+G GI KE ++F ++V++ G G
Sbjct: 957 ---------------------LNLKFEIADSGIGIKKEDLDSLFGDFVRLDAERNRGIEG 995
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
TGLGL I ++L +MGGDI IV E G +G+ F V
Sbjct: 996 TGLGLAITRNLCLVMGGDI-IVSSEYG-KGSVFTAQV 1030
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ DD VAE L A ++ C NG A+ V+ PYD +
Sbjct: 1172 RILIVDDITTNLTVAEGLLVPYKAQIDCCLNGLTAVSKVKE-------------TPYDLV 1218
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+D MP M+G E + IR + +PIIALTA+ + + G + ++ KP+
Sbjct: 1219 LLDHMMPGMDGIETAKAIRALDLAYTKEMPIIALTANALSGMREMFLANGFNDYISKPIE 1278
Query: 1120 RDHLMEAIK 1128
L + ++
Sbjct: 1279 ISQLNDVVE 1287
>gi|119773209|ref|YP_925949.1| signal transduction histidine kinase-like protein [Shewanella
amazonensis SB2B]
gi|119765709|gb|ABL98279.1| Hpt sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
Length = 1021
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 147/296 (49%), Gaps = 59/296 (19%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN----LRQM 412
+EA ++AE S K+ A SH+IR + G+ G++ L +EL L
Sbjct: 384 VEAREKAEAASRIKADFLACMSHEIRTPMNGVLGILSLL-----EKTELSIQQKHYLDVA 438
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
+ A LL LLN ILD SK+E+GK ++ E FD+ +LL+D + F A KG++++LD
Sbjct: 439 STSAESLLTLLNDILDFSKIESGKFEIDEVPFDLIQLLDDFIQPFAIRAEAKGLKLLLDI 498
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
S G L++ V+GD +++Q+L NL+SNA+KFT G I+VR
Sbjct: 499 S-GIHLRW--VRGDPGRIRQVLVNLVSNAIKFTEVGWIAVR------------------- 536
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
V A++ N + ++DTG GI K+K++ +F + Q
Sbjct: 537 ----------------------VQASEDTANGVSLMVSIEDTGIGISKDKQEVLFSPFTQ 574
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + L LM GDI ++ E+ G+ F+F++ L AS
Sbjct: 575 ADSTTTRHFGGTGLGLSIAKRLCELMDGDIRVISAEDA--GSTFKFHLRLKSEAAS 628
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 15/123 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+IL+ +D+ + + VA LR+LG VE NG AL + L ++ YD
Sbjct: 774 QILLVEDNKVNQMVALGMLRNLGLKHVEVVTNGLQAL----AALQHRQ---------YDL 820
Query: 1059 ILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
ILMDC MP M+GY+AT+ IR+ E + I I+A+TA+ + + +EAGM+ ++ KP
Sbjct: 821 ILMDCLMPEMDGYQATQAIRKGEAGQKHKDIKIVAMTANAMKGDRETCLEAGMNDYIAKP 880
Query: 1118 LNR 1120
L++
Sbjct: 881 LHQ 883
>gi|332140272|ref|YP_004426010.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Deep ecotype']
gi|327550294|gb|AEA97012.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Deep ecotype']
Length = 959
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 141/289 (48%), Gaps = 59/289 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL----ETNLRQMN 413
EA ++AE + KS A+ SH+IR + GI+G+++L GSEL + L
Sbjct: 565 EAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLL-----GGSELTGEQKHYLSLAK 619
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
LL ++N ILD SK+EAG++Q+ E FD+ E LE++ + + KG+E+
Sbjct: 620 FSIQGLLHIVNDILDFSKIEAGQLQIEESPFDILESLENLQSQYAILCQEKGLELHFH-- 677
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ + V+GD V+ +QILSNLL NAVKFT G+I V C++K NP
Sbjct: 678 -FDLQGYHVVQGDDVRFRQILSNLLGNAVKFTDTGYIEVTTCIEK-----NP-------- 723
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
+N + V DTG GI ++K+ T+F+ + Q
Sbjct: 724 ----------------------------DNTLRLLCSVKDTGIGIAQDKQSTIFDVFTQE 755
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + L LMGGDI++ + G+ F F + L
Sbjct: 756 DLSTTRKFGGTGLGLSISKQLCGLMGGDIKLESVKGN--GSTFSFTIQL 802
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 99/174 (56%), Gaps = 22/174 (12%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDG------ERSQAQKPLRGKK--ILVADDSMMLRRVAE 1015
+K + G GS+ ++EE D + A K ++GKK +L+ +D+ + + +A+
Sbjct: 784 IKLESVKGNGSTFSFTIQLEEADESLIKPIHYNNASKTVKGKKRKVLIVEDNDINQVIAK 843
Query: 1016 INLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075
+L + T + ++G ALQ LN + + +D ILMDC+MP M+G+EAT+
Sbjct: 844 QHLSN--HTTLSAKSGVEALQ----ALNKMK-------VTFDVILMDCQMPEMDGFEATK 890
Query: 1076 KIREEEKRNQ-VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+IR E ++ +++PIIALTA+ + ++ + AGMD +L KP + + L + ++
Sbjct: 891 RIRNGEAGSRYLNVPIIALTANAMKGDKERCVSAGMDDYLSKPFDAEDLTDKVE 944
>gi|407799046|ref|ZP_11145948.1| cytoplasmic sensor hybrid histidine kinase [Oceaniovalibus
guishaninsula JLT2003]
gi|407059052|gb|EKE44986.1| cytoplasmic sensor hybrid histidine kinase [Oceaniovalibus
guishaninsula JLT2003]
Length = 849
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 138/278 (49%), Gaps = 50/278 (17%)
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSI 426
SM KS AN SH++R L G+ G+ E+ +E E ++ + A LL +L I
Sbjct: 339 SMAKSTFLANMSHELRTPLNGVLGMAEMV-LETPLDDEQRVSVEMIRSSAGALLTILEDI 397
Query: 427 LDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGD 486
LD S++EAG+++L FD+ + D V L A KG+ VV+D + + GD
Sbjct: 398 LDFSRIEAGRLRLRPVRFDLETAVHDTVLLLALQAQAKGIGVVVDY---DIFLPTGFIGD 454
Query: 487 RVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNK 546
+L+QIL NL+ NA+KFT +GH+ VR ++
Sbjct: 455 GDRLRQILVNLVGNAIKFTDDGHVIVRVTGRE---------------------------- 486
Query: 547 KARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGL 602
GD+ + ME T V+DTG GIP EK + +F + QV+E + GTGL
Sbjct: 487 ---GDV---------ADTMEVTIAVEDTGIGIPAEKAEHIFGEFNQVEENQNRAYAGTGL 534
Query: 603 GLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GL I + L+ LMGG I + + + RG+CF ++ +A+
Sbjct: 535 GLAICRRLIDLMGGRIWV--ETDLPRGSCFGVSLTMAV 570
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1055 PYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
P ILMD MP M+G A +IR E PI+A+TAH +A+ + AG+D +
Sbjct: 758 PPHLILMDISMPGMDGKTAATEIRRIEADGGLARTPIVAMTAHAMAGDAESILAAGIDQY 817
Query: 1114 LGKPLNRDHLMEAI 1127
+ KPL++ L+ I
Sbjct: 818 MTKPLSKAALVACI 831
>gi|414152783|ref|ZP_11409112.1| Multi-sensor hybrid histidine kinase [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411455973|emb|CCO07014.1| Multi-sensor hybrid histidine kinase [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 1290
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 137/287 (47%), Gaps = 50/287 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A AE+ S KS AN SH+IR + GI G E+ ++ E +++ + C
Sbjct: 554 QARLAAEQASRAKSEFLANMSHEIRTPMNGILGFAEVL-LQQNLTHEQTESVKVIQQCGE 612
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N ILD SK+E+GK+ L DF + +L+ + V L P + VE+++
Sbjct: 613 QLLELINDILDLSKIESGKLVLERTDFSLRKLIHEAVSLVEPKLAARNVEMIIQLQQDLP 672
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
F KGD +++QIL+NLLSNA KFT G++ + + P
Sbjct: 673 DYF---KGDPTRIRQILNNLLSNAAKFTHRGYVKISVAGEGPV----------------- 712
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
EN ++ F V+DTG GIPK+K + +F+ + Q
Sbjct: 713 -----------------------QENEIKLKFIVEDTGIGIPKDKLELIFQAFTQADGST 749
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I ++L +LMGG I + +EN G+ F + L +
Sbjct: 750 TRKYGGTGLGLTISRNLAQLMGGRITVASEENS--GSQFTLTLPLTV 794
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 16/128 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D+ +R+ + L V ENG ALQ L R +D I
Sbjct: 1071 RILLAEDNHFNQRLM-VQLLAAEFQVTVAENGLQALQ----ALERNR---------FDLI 1116
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP+M+GYEATR+IR ++K IPIIALTAH + +K + AG D +L KP+
Sbjct: 1117 LMDMQMPVMDGYEATRQIRSQKKYQD--IPIIALTAHAMKGDEEKCLAAGCDGYLAKPVK 1174
Query: 1120 RDHLMEAI 1127
RD L+ I
Sbjct: 1175 RDVLLRTI 1182
>gi|418720544|ref|ZP_13279742.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii str.
UI 09149]
gi|410743522|gb|EKQ92265.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii str.
UI 09149]
Length = 822
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 163/334 (48%), Gaps = 63/334 (18%)
Query: 337 FKSARAARKEMHLCASLIKQ------------MEATQQAERKSMNKSLAFANASHDIRAA 384
FK + E+H L+K+ ++A + AE+ S KS AN SH+IR
Sbjct: 392 FKLKEGLQSEIHKNIILLKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIRTP 451
Query: 385 LAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDF 444
+ G+ G+++L E + ++ +++ A LL ++N ILD SK+EAGK+ L +E F
Sbjct: 452 MNGVLGMVQLLGT-TKLNDEQKEYIQILSISAKSLLQIINDILDFSKIEAGKISLDKEVF 510
Query: 445 DVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKF 504
+ +L+++ DL +P+A +K + + L+ D S ++ V GD+++L+QIL NL N +KF
Sbjct: 511 SIHSVLDEIHDLLYPLAKQKRIGLRLE--DKSEIQ-EYVYGDQLRLRQILWNLTGNGIKF 567
Query: 505 TSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENA 564
T+ G + + K S +D+ +
Sbjct: 568 TNHGEVVLNVSQKNIS---------------------------------------KDKIS 588
Query: 565 MEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
++FT V D+G GIP EK+K VF+ + Q GG+GLGL I + LV L GG + +
Sbjct: 589 IKFT--VSDSGIGIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQLVELQGGTLNL 646
Query: 621 VDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
KE+ G+ F F + I S + + EK
Sbjct: 647 ESKES--YGSKFTFTITYDIPSESEIEKILEAEK 678
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + + KILVA+D+ + E L+ LG NG ++ +
Sbjct: 680 KDLESAYSNATSKSMKILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIEKM------ 733
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
Q D +D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 734 QLDF-------FDMILMDIHMPEVDGIEATKWIRSQKQNTEFPI-IIALTADVIESNKEV 785
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ +L KPL+
Sbjct: 786 YISKGMNDYLTKPLD 800
>gi|414070614|ref|ZP_11406596.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
gi|410806922|gb|EKS12906.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
Length = 1098
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 152/287 (52%), Gaps = 53/287 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV-C 415
+EA AE+ ++ KS A+ SH+IR + G+ G+ L ++ P +E + ++ +
Sbjct: 557 IEAKALAEQANIAKSEFLASMSHEIRTPMNGVLGM--LNFILDSPLNEKQQYQTRIALNS 614
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
AN LL ++N ILD SKV+AGK++L E +F++ +L D ++ A KG+E++LD +D
Sbjct: 615 ANSLLNIINDILDFSKVDAGKLELEELEFNLHAMLGDFLETVAAQAYSKGIELILDITD- 673
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+K+ V GD +L+QIL+NL++NA+KFT G +
Sbjct: 674 --IKYPFVIGDPGRLRQILTNLVNNALKFTHVGEV------------------------- 706
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
Q I+ L N N + F +V DTG GIP E++ +F+++ QV
Sbjct: 707 QIIAKLIPTNG----------------NEIRFNCQVKDTGIGIPVEQQAKLFKSFSQVDS 750
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL IV+ L LM G++E+ EN +G+ F F++ L
Sbjct: 751 STTRKYGGTGLGLAIVKKLCNLMQGEVEVKSDEN--KGSNFIFDITL 795
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 83/134 (61%), Gaps = 12/134 (8%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+IL+A+D+ + + VA L+ +G + V+ NG+ L + DQ++ I PY
Sbjct: 969 RILLAEDNQINQIVAATTLKKMGISVVDIATNGKEVLDYL-----DQKN----TIEPYSL 1019
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
ILMDC+MP+M+GY+AT IR E R++ + I IIA+TA+ + K +++GMD ++ KP
Sbjct: 1020 ILMDCQMPVMDGYQATTLIRNNEARDKANAITIIAMTANAMTGDKTKCLDSGMDDYISKP 1079
Query: 1118 LNRDHLMEA-IKYL 1130
+ +D L E +K+L
Sbjct: 1080 IAQDILFEKLLKWL 1093
>gi|83950813|ref|ZP_00959546.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
ISM]
gi|83838712|gb|EAP78008.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
ISM]
Length = 729
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 144/301 (47%), Gaps = 68/301 (22%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ------- 411
A +AE S KS AN SH+IR + G+ G+ +L ET+L +
Sbjct: 205 AKHRAEAASRAKSAFLANMSHEIRTPMNGVMGMADLLR---------ETDLDEDQALYAT 255
Query: 412 -MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ A LLG++N +LD SKVEA ++ L + FD+ L +++ L P A +GV+V L
Sbjct: 256 TIRNSAEALLGIINDVLDYSKVEADRLSLQLDGFDLERCLHEIILLMQPKARDQGVDVWL 315
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
D + ++++GD +++Q+L+NL+ NAVKFT EGH+ +R
Sbjct: 316 ---DYDLFLPTRLRGDGGRIRQVLTNLIGNAVKFTPEGHVLIRVV--------------- 357
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
V+A E E V+DTG GI +K VF +
Sbjct: 358 -----------------------GVSA----EGRAEIHVTVEDTGIGIAPDKIGHVFGEF 390
Query: 591 VQVKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
QV+E + GTGLGL I Q L+RLMGG+I V+ G+ G+ F F + L I E
Sbjct: 391 NQVEEAQNRRFEGTGLGLAIAQKLIRLMGGEI-WVESAPGQ-GSVFGFTITLDIEEPQGQ 448
Query: 647 D 647
+
Sbjct: 449 E 449
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 16/130 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LR ++L A+D+ R V E ++ L + ENG A+ G P
Sbjct: 591 LRKLRVLAAEDNRTNRLVFEKMVKALAIELRFAENGREAVA------------GYAAFEP 638
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAH-ISGEEADKTIEAGMDVHL 1114
D I MD MP M+G EA+R IR E H+PI+A+TAH + G+EAD AG+D +L
Sbjct: 639 -DIIFMDISMPEMDGKEASRAIRRHEGHG-AHVPIVAMTAHAMQGDEADIR-AAGIDHYL 695
Query: 1115 GKPLNRDHLM 1124
KPL + L+
Sbjct: 696 TKPLRKPELI 705
>gi|421496245|ref|ZP_15943481.1| hypothetical protein B224_002742 [Aeromonas media WS]
gi|407184737|gb|EKE58558.1| hypothetical protein B224_002742 [Aeromonas media WS]
Length = 1322
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 136/286 (47%), Gaps = 52/286 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A Q+AE + KS AN SH+IR + I GL L + P S L +++ A
Sbjct: 700 QAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKRDT-PDSTQHERLEKIDHAAQ 758
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK++AGKM L + DF + +L++V L A KG+ +++D D
Sbjct: 759 HLLTIINDILDLSKIDAGKMALEQGDFSLTAMLDNVSALVSEQARAKGLTIMVDMGDSP- 817
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ V GD +L+Q L N +NA+KFT +G +++R V +P A G+L
Sbjct: 818 ---TWVHGDITRLRQALLNYAANAIKFTEQGAVTLRVRVARPLA----------SGYL-- 862
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY----VQV 593
FEV+DTG GI E+R+ +F+ + V
Sbjct: 863 -----------------------------LRFEVEDTGIGISPEQREKLFQAFEQADVST 893
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL I L LMGG+ + +G+CF F L+
Sbjct: 894 TRKYGGTGLGLAITSRLAALMGGEAGVSSTLG--QGSCFWFTAALS 937
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 16/139 (11%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
+Q P + +LV D+++ V E+ L + G +E NG+ AL+ VR
Sbjct: 954 TQTYFPHHARVLLVEDNAINREVVLEL-LCNSGLVIETAVNGQEALERVRQH-------- 1004
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
+D ILMD +MP+M+GY+ATR IR R +PI+ALTA E+ AG
Sbjct: 1005 -----AFDLILMDIQMPVMDGYDATRAIRTLPGREL--LPILALTASAFEEDRKACESAG 1057
Query: 1110 MDVHLGKPLNRDHLMEAIK 1128
M+ + KP+ L EA++
Sbjct: 1058 MNDFITKPVTPAKLFEALQ 1076
>gi|428212927|ref|YP_007086071.1| urea ABC transporter substrate-binding protein [Oscillatoria
acuminata PCC 6304]
gi|428001308|gb|AFY82151.1| urea ABC transporter, urea binding protein [Oscillatoria acuminata
PCC 6304]
Length = 822
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 142/292 (48%), Gaps = 40/292 (13%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG---PGSELETNLRQMNVC 415
A A+ S KS AN SH++R L I G EL E +L +L+++N+
Sbjct: 552 AVYAAQAASRAKSTFLANMSHELRTPLNAIVGYSELLQEEVEEILADEQLIGDLQKINIA 611
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
+LL +++ ILD SK+EAGKM L + FDV +L+++VV P+ + G + +D D
Sbjct: 612 GKNLLAIVSDILDISKIEAGKMDLCLDAFDVPQLIQEVVTTLEPLMLANGNAIQIDYPD- 670
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
K + D K++QIL NLLSNA KFT G I + +K P+ NP
Sbjct: 671 ---KIEMMTADITKVRQILLNLLSNAAKFTENGKIILEVRIKNPAE--NP---------- 715
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFT-FEVDDTGKGIPKEKRKTVFENYVQVK 594
G+ +N+ + F V DTG G+ E+ +F+ +VQ
Sbjct: 716 --------------GEQVTLNSTPLPPTETPWILFRVRDTGIGMSTEQLAQLFQPFVQGD 761
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
+ GGTGLGL +V+ +MGG I V+ E G RG+ F + L +++
Sbjct: 762 DSTTRKYGGTGLGLALVKKFCEMMGGAIA-VESELG-RGSVFEIILPLQVKK 811
>gi|427730842|ref|YP_007077079.1| signal transduction histidine kinase [Nostoc sp. PCC 7524]
gi|427366761|gb|AFY49482.1| signal transduction histidine kinase [Nostoc sp. PCC 7524]
Length = 653
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 159/309 (51%), Gaps = 34/309 (11%)
Query: 353 LIKQMEATQQ--------AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE 404
+I+Q++++QQ AE+ + KS AN SH++R L I G ++ + +E
Sbjct: 93 VIEQLQSSQQELIKRQQAAEQANFAKSEFLANMSHELRTPLNAILGFTQIMSHDHTLSTE 152
Query: 405 LETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK 464
+ NL +N LL L+N ILD SK+EAG+ L +FD+ LL++V + A K
Sbjct: 153 NQQNLEIINRAGEHLLNLINDILDISKIEAGRTTLNLSNFDLLHLLDNVQKILQVRAAAK 212
Query: 465 GVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN 524
G+++ + + ++ ++ ++ D KL+QIL N+LSNA+K+T+ G +++R + N
Sbjct: 213 GLQLKFEYA-ANLPRY--IQTDASKLRQILLNILSNAIKYTASGSVTLRVKLGTGDKERN 269
Query: 525 PSLSSSRHGFLQSISCLF------YKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
PS SC F + ++++ + + + FE+ DTG GI
Sbjct: 270 PS------------SCFFPIEHCNTRGQRSKATTLSPPSPLSVTHLPSLIFEIQDTGMGI 317
Query: 579 PKEKRKTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
++ +FE + Q + G + GTGLGL I + V+LMGGDI + G+ F FN
Sbjct: 318 APQELDLLFEAFRQTESGRKSQQGTGLGLVISRKYVQLMGGDITVFSTVGI--GSKFTFN 375
Query: 636 VFLAIREAS 644
+ + + AS
Sbjct: 376 IQVDLISAS 384
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 68/166 (40%), Gaps = 48/166 (28%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD R + L LG +V NG+ AL Q PH+ I
Sbjct: 406 RILVVDDVTDNRLLLVKLLSSLGFSVREATNGQEAL--------TQWHSWQPHL-----I 452
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHI------------------------------- 1088
LMD MP+M+GYEATR IR E +++ I
Sbjct: 453 LMDMRMPVMDGYEATRLIRNHEMQHEKPILTSIRNNSTTQCLPNLRYLSECMSAVQSKTN 512
Query: 1089 ---PIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
IIALTA EE K + +G D + KP + L+E + KYL
Sbjct: 513 TRTIIIALTAIAFEEERQKILSSGCDDCICKPFVQGVLLEKLKKYL 558
>gi|410658956|ref|YP_006911327.1| Sensory box histidine kinase/response regulator [Dehalobacter sp.
DCA]
gi|410661943|ref|YP_006914314.1| Sensory box histidine kinase/response regulator [Dehalobacter sp. CF]
gi|409021311|gb|AFV03342.1| Sensory box histidine kinase/response regulator [Dehalobacter sp.
DCA]
gi|409024299|gb|AFV06329.1| Sensory box histidine kinase/response regulator [Dehalobacter sp. CF]
Length = 1273
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 144/288 (50%), Gaps = 51/288 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A ++AE + KS AN SH+IR + GI G+I+L + E NL +CA
Sbjct: 778 IKAKEEAEAANRAKSEFLANMSHEIRTPVNGINGMIDLT-LATDLNPEQRDNLETAKICA 836
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
N LL L++ ILD SK+EA K+ + +FD+ +LLE + A +KG+++ D D S
Sbjct: 837 NSLLALISDILDFSKIEARKLVVENINFDMHDLLEKNSKVHTLRASKKGLQLTYDL-DPS 895
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ K+ + GD +L+Q+L+NL+ NA+KFT G ISV
Sbjct: 896 IPKY--LIGDPNRLRQVLNNLVDNAIKFTDTGKISV------------------------ 929
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
VN + + ++ F V DTG GI +E + +F+ + QV
Sbjct: 930 -----------------TVNNVLKTDQDIKLKFAVQDTGIGISEEDQTFLFKTFTQVDSS 972
Query: 597 ----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I + LV LMGG +++ ++ RG+ F F++ I
Sbjct: 973 ITRKYGGTGLGLAISKQLVELMGGTMQVSSQKG--RGSTFYFSIKFKI 1018
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 22/136 (16%)
Query: 996 LRGKKILVADDS----MMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
+R IL+A+D + LRR+ L+ G V+ +NG L L +
Sbjct: 1036 IRPLHILLAEDDKVSQVFLRRM----LKERGHQVDTADNGLEVLDLFKKK---------- 1081
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
YD +LMD +MP+M+G EAT+ IRE E + H PIIA++A+ + + GMD
Sbjct: 1082 ---HYDLVLMDIQMPVMDGIEATKIIRESEG-GRTHTPIIAVSAYALQGDEQRFQAMGMD 1137
Query: 1112 VHLGKPLNRDHLMEAI 1127
+L KP++ ++LM+ I
Sbjct: 1138 NYLAKPIDINNLMKKI 1153
>gi|254444274|ref|ZP_05057750.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198258582|gb|EDY82890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 748
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 136/282 (48%), Gaps = 52/282 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A + AE ++ KS A SH+IR + G+ G++ L +E E L CA+D
Sbjct: 81 AMKAAESANVAKSEFLATMSHEIRTPMNGLVGVLTL--LEEDLPFEKRKLLGTAQECADD 138
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N ILD SK+EAGKM L +F+ L E + +L A +KG+E+ D S
Sbjct: 139 LLVLINDILDFSKIEAGKMNLESVEFNALNLAESICELHSSSAHKKGLEITSDSDPSSA- 197
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
F + GD ++L+Q++SNL SNA+KFT++G I V PS+ S
Sbjct: 198 -FCSI-GDPLRLRQVISNLTSNAIKFTNQGEIVV-----------TPSIVS--------- 235
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
+D FE+ D+G GI KE ++ +F + Q
Sbjct: 236 ---------------------KDCEQNYLRFEITDSGIGITKETQEKLFNAFTQANSSTT 274
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL I + L+ +MGGDI + KE G+ F F +
Sbjct: 275 REFGGTGLGLAISKKLIEIMGGDIGVSSKEGT--GSTFWFEI 314
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 17/148 (11%)
Query: 984 EEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGL 1042
+E+ ++ + KP +IL+ DD+ R +A LR A + NG A+ ++ G
Sbjct: 474 KEETAKAPSSKPHSDLQILLVDDNSTNRMIASQLLRQKHAIDPKNASNGRQAIDALQDG- 532
Query: 1043 NDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEE--KRNQVHIPIIALTAHISGE 1100
+D +LMDC MP M+GY+ATR IRE + ++N+ IPIIALTA+
Sbjct: 533 ------------TFDLVLMDCMMPEMDGYDATRAIREGQAGEKNK-DIPIIALTANAMSG 579
Query: 1101 EADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ + I AGM+ +L KP+ L E ++
Sbjct: 580 DRENCISAGMNAYLSKPIRPKELAEILQ 607
>gi|322420676|ref|YP_004199899.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320127063|gb|ADW14623.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 815
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 54/284 (19%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
+ AE S+ KS AN SH+IR + G+ G++ + +E+G E + LL
Sbjct: 293 EAAEAASLAKSQFLANMSHEIRTPMNGVLGMVSVL-LESGLAGEQRRFAEAVRNSGESLL 351
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
++N ILD SK+EAG+M+L FD+ +LL V+++F A RKGV V L D ++ ++
Sbjct: 352 SIINDILDFSKIEAGRMELEPAPFDLQDLLGGVLEMFAAGAQRKGVTVSLQ-LDPALPRY 410
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
V+GD V+L+QIL NLL NAVKFTS G + ++A + + G+L+
Sbjct: 411 --VEGDPVRLRQILVNLLGNAVKFTSRGSVQLKAA------------ALAGEGWLR---- 452
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--- 597
FEV DTG GI E + +FE++ Q
Sbjct: 453 ----------------------------FEVADTGIGIRPEAQAHIFESFSQADYSTTRT 484
Query: 598 -GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I + L LMGG++ + E G G+ F F+V L +
Sbjct: 485 YGGTGLGLAISRQLAELMGGELGL-QSEYGV-GSAFWFSVRLEV 526
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 14/136 (10%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
K L ILVA+D+ + + V L LG VE ENGE L + SG
Sbjct: 546 KLLFDASILVAEDNPVNQDVVRHMLGQLGCRVEIVENGE--LAVAASGREG--------- 594
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIR-EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
Y + MDC+MP M+G+ ATR IR E +PI+ALTA+ + + + AGMD
Sbjct: 595 --YHLVFMDCQMPQMDGFAATRAIRGREAGEGGRRLPIVALTANALAGDRELCLAAGMDD 652
Query: 1113 HLGKPLNRDHLMEAIK 1128
+L KP + L E ++
Sbjct: 653 YLTKPFDCRQLAEVLQ 668
>gi|170748811|ref|YP_001755071.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170655333|gb|ACB24388.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 676
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 144/308 (46%), Gaps = 62/308 (20%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY-VEA 399
RA R ++ + A ++AE S+ KS A SH++R L GI G+ +L E
Sbjct: 145 RAGRDVTARVEAIRSRDAALERAEAASVAKSRFLATVSHEMRTPLNGILGMADLVLGTEL 204
Query: 400 GPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHP 459
P E T + + LLGL++ +LD S++EAG++ L E FD+ L E VV+L P
Sbjct: 205 NP--EQRTYVEAVRTSGQALLGLIDGVLDFSRIEAGRLDLAAEPFDLPALSEGVVELLAP 262
Query: 460 VAMRKGVEVVLDPSDGSVLKF-SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK 518
A KG+E+ LD ++ F + V GD +++QIL NL NA+KFT G + V
Sbjct: 263 RAQDKGIEIALDVAE----DFPAAVLGDADRVRQILINLAGNAIKFTERGGVGV------ 312
Query: 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
SL +R G E V DTG GI
Sbjct: 313 -------SLGFARAG-----------------------------TGGEVVLAVADTGPGI 336
Query: 579 PKEKRKTVFENYVQVKEGEG-------GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTC 631
P+E+ +FE + Q G+G GTGLGL I + LV MGG IE D G RG+
Sbjct: 337 PEERLPILFEEFEQ---GDGSASRSHEGTGLGLAITRRLVTRMGGRIE-ADSRLG-RGST 391
Query: 632 FRFNVFLA 639
FR + LA
Sbjct: 392 FRVLLPLA 399
Score = 48.9 bits (115), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENG-EAALQLVRSGLNDQRDLGAPHILPYDY 1058
++L+A+D+ + +A L LGATV +G EA +L G P+D
Sbjct: 553 RVLLAEDNPINALLATRALERLGATVVHAADGLEALARLETDG-------------PFDL 599
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
L+D MP ++G+E R+IR E + ++ALTA+ E+ AG D L
Sbjct: 600 ALIDVRMPRLDGHETARRIRAAESDGAQRLHLVALTANAGREDEAAARAAGFDGFL 655
>gi|288959555|ref|YP_003449896.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
gi|288911863|dbj|BAI73352.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
Length = 1284
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 140/286 (48%), Gaps = 52/286 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP-GSELETNLRQMNVCAN 417
A +QAE + +K+ A SH+IR + G+ G++EL + P E T + M
Sbjct: 559 AKEQAEIAARSKAEFLATMSHEIRTPMNGVLGMLELMALT--PLDEEQRTLVSTMRDSGA 616
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL +++ ILD SK+EAGK++L E D +L+E V DL P A +KG+ ++ D DGSV
Sbjct: 617 ALLRIIDDILDLSKIEAGKLELEELDLSPADLVEGVADLLAPQAHQKGLALICD-IDGSV 675
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ +++GD +L+QIL NL NA+KFT G + +R + +A +P+L
Sbjct: 676 PE--RLRGDSGRLRQILFNLTGNAIKFTDRGRVVLRV---QAAATADPTL---------- 720
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+ T V+D+G GI E + +F+ + Q
Sbjct: 721 ---------------------------IRLTVAVEDSGIGIGPEGQARLFQPFSQADSST 753
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL I LV MGG I + RG+ FRF V LA
Sbjct: 754 TRRFGGTGLGLAICTRLVERMGGRIGVESVPG--RGSIFRFTVELA 797
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D ++V LR LG E +G AL R G + ++
Sbjct: 1002 ILVAEDHPTNQQVVLRQLRRLGYAAELAADGAQALAAWRGGR-------------HRLVI 1048
Query: 1061 MDCEMPIMNGYEATRKIR-EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
DC MP+M+GYE R++R EEEK PI+A+TA+ E ++ + AGMD +L KP+
Sbjct: 1049 TDCHMPVMDGYELARRLRLEEEKDGGRRTPIVAMTANALSGERERCLAAGMDDYLAKPVT 1108
Query: 1120 RDHL 1123
L
Sbjct: 1109 LAQL 1112
>gi|392534310|ref|ZP_10281447.1| two-component hybrid sensor and regulator [Pseudoalteromonas arctica
A 37-1-2]
Length = 1587
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 146/284 (51%), Gaps = 52/284 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE ++ KS A SH+IR + G+ G++EL +E+ +ET + A+
Sbjct: 1060 ALVKAEDAAIAKSQFLATMSHEIRTPMNGVLGMLELVQLES-LSKPIETKVGIAKTSAHS 1118
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LLG++N ILD SK EAGK++L E +F+ +L+ +V A KG+E++LD L
Sbjct: 1119 LLGVINDILDFSKAEAGKIELEEINFNGRDLIGEVAAAQALTAQEKGIEIILDL---VAL 1175
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+ S++ GD +++Q+L+NLLSNAVKFTS+G + V A +
Sbjct: 1176 EPSQLCGDPGRIRQVLTNLLSNAVKFTSKGEVVVSAKI---------------------- 1213
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
NK A+G +EF + D+G GI +EK++ +F + QV
Sbjct: 1214 ------NKVAQG--------------LEFVASIKDSGIGISEEKQQQLFTPFSQVDASTT 1253
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GG+GLGL I + L LMGG I + E G +G+ F + L
Sbjct: 1254 REYGGSGLGLAICKQLCELMGGAISLT-SEAG-KGSTFTATIML 1295
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 26/179 (14%)
Query: 955 DIMPNASVLLKTGNSSGEG----SSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMML 1010
D++ SV+ T N +GE +S Y + +E+ E SQ IL+ +D+ +
Sbjct: 1427 DLISALSVI--TSNDAGETLPLVTSGYISSLKKEKMQEFSQ---------ILLVEDNPIN 1475
Query: 1011 RRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG 1070
++VA++ L+ L V NG+ A+ ++ + D G + +LMDC+MP+M+G
Sbjct: 1476 QQVAKLMLKKLNCDVTIAGNGQLAIDILEA-----HDSGY-----FKLVLMDCQMPVMDG 1525
Query: 1071 YEATRKIREEEKRNQ-VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ AT IR+ Q +I IIA+TA+ + ++ I AGMD +L KP+ D L + ++
Sbjct: 1526 FAATAAIRKGVAGIQHKNIKIIAITANAMNSDKERCITAGMDDYLSKPIQLDILKDKLE 1584
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LV DD+ R V L H GA V + AL + D+ + YD +
Sbjct: 1315 VLVVDDNETNRIVISQQLEHWGAKVALACDAHEALDMCAQQYKDKSCM-------YDIAV 1367
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
+D +MP M+G E + ++ E +P++ +T+ E A + +AG + KP+
Sbjct: 1368 LDMQMPGMDGIELCKALKAHEHYKS--MPLVMMTSIAGMEGAQRYSDAGFQAYFPKPVTT 1425
Query: 1121 DHLMEAI 1127
L+ A+
Sbjct: 1426 ADLISAL 1432
>gi|188584124|ref|YP_001927569.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
gi|179347622|gb|ACB83034.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
Length = 686
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 140/289 (48%), Gaps = 50/289 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +AE ++ KS A SH++R L GI G+ +L ++ E T +
Sbjct: 166 EAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLL-LDTPLNPEQRTYVEAFRTSGK 224
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLGL++ ILD S++EAG++ L E FDV L+E VV+L P A KG+E+ LD +D
Sbjct: 225 ALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADD-- 282
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L +V GD +++QIL NL NA+KFT G + V SL+ + G
Sbjct: 283 LTALRV-GDADRVRQILVNLAGNAIKFTQAGGVGV-------------SLARAGEG---- 324
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
QR+ F ++DTG GIP+E+ +FE + Q ++
Sbjct: 325 ---------------------QRE----GFVLTIEDTGPGIPEERIPILFEEFEQGEDSA 359
Query: 598 G--GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GTGLGL I + LV M G IE + RG+ FR + L E +
Sbjct: 360 SHEGTGLGLAITRRLVERMNGTIEA--RSTVGRGSIFRVVLPLPAAEGA 406
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G+++L+A+D+ + +A L LGA V +G L + ++ Q P+D
Sbjct: 561 GRRVLLAEDNPINALLATKALERLGAQVILARDGLETL----AAVDGQG--------PFD 608
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDVHLGK 1116
L+D MP ++G E R+IR E + ++ALTA+ E+ AG D L K
Sbjct: 609 LALIDIRMPGLDGLEVARRIRAREAETGAEPLHLVALTANTGREDVTAAFAAGFDNFLPK 668
Query: 1117 PLN 1119
PLN
Sbjct: 669 PLN 671
>gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response
regulator [Geobacter bemidjiensis Bem]
gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF
domain-containing [Geobacter bemidjiensis Bem]
Length = 947
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 148/309 (47%), Gaps = 67/309 (21%)
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSI 426
S KS AN SH++R + G+ G+++L +++ E +R LL +LN I
Sbjct: 568 SRTKSQFLANMSHELRTPMTGVLGMLDLA-LQSPSDLERSDYIRTAYRSGRSLLQILNDI 626
Query: 427 LDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGD 486
LD SKVEAGK L + F + + + VD+ P A RKG+E+ LD + ++V GD
Sbjct: 627 LDLSKVEAGKYSLDLKPFSLKSCVAEAVDIAAPEAKRKGIELELDLAQDLP---ARVAGD 683
Query: 487 RVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNK 546
+V+L+Q+L+NL+ NAVKFT G ++V+ V + G L
Sbjct: 684 QVRLRQVLTNLVGNAVKFTERGRVTVQVEVADKTPEGESLLR------------------ 725
Query: 547 KARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGL 602
F V DTG GIP++KR +F+ + Q+ + GGTGL
Sbjct: 726 ----------------------FRVSDTGIGIPQDKRHLLFQAFSQIDDSNTRNYGGTGL 763
Query: 603 GLGIVQSLVRLMGGDIEIVDKENGE-RGTCFRFNVFL------------AIREASANDNN 649
GL I + +V+ MGG+I E+GE G+ F F L A+ E+ A D
Sbjct: 764 GLAISKEIVQRMGGEIGF---ESGEGVGSTFTFTARLVVPHPDEQPAEVAVSESVAPD-- 818
Query: 650 TQGEKELAG 658
G +ELAG
Sbjct: 819 -PGGQELAG 826
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 79/134 (58%), Gaps = 15/134 (11%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
+ L G ++L+A+D +R+V L+ L +V+ E+G +++ R G
Sbjct: 822 QELAGLRLLIAEDDATIRQVLATMLQRLQFSVDFAEDGAKVVEMWRQG------------ 869
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
YD ILMD +MP M+G++ATR IRE+E+ + IPIIA+TAH E+ + ++AGMD +
Sbjct: 870 -EYDLILMDVQMPRMDGFQATRAIREQEQGGR--IPIIAMTAHAMKEDQRRCLDAGMDDY 926
Query: 1114 LGKPLNRDHLMEAI 1127
+ KP+N +E +
Sbjct: 927 ISKPINFKECIEKV 940
>gi|451819248|ref|YP_007455449.1| multi-sensor hybrid histidine kinase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785227|gb|AGF56195.1| multi-sensor hybrid histidine kinase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 946
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 142/288 (49%), Gaps = 59/288 (20%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ----MNV 414
A AE + KS AN SH+IR + G+ G + L ++L T+ R+ + V
Sbjct: 435 AKDIAEEANRAKSEFLANMSHEIRTPMNGVVGFLSLL-----EKTDLNTSQREFIDTIKV 489
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
+ LL ++N ILD SK+EAGKM+L F++ ++E V LF+ A K +++ L D
Sbjct: 490 SSETLLAVINDILDISKIEAGKMELENIPFNITTIIERTVFLFNGRAKEKEIKLNL-SID 548
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
+ F +KGD KL+Q++SNL+SNAVKFT+EG I V A +
Sbjct: 549 SKIPDF--LKGDSTKLRQVISNLISNAVKFTNEGEILVEASL------------------ 588
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
VN + D E F+V DTG G+ + + +F+ + Q
Sbjct: 589 --------------------VNQTEVD---TEIYFKVRDTGIGMNEHEMAKLFKPFSQAD 625
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + +V LMGG I +V K+ + GT F FN+ L
Sbjct: 626 SSSTRKYGGTGLGLAICKKIVELMGGTIGVVSKK--DEGTTFYFNLIL 671
Score = 79.7 bits (195), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 14/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D+ + RR +L+ +G + + NG AL A I Y I
Sbjct: 701 RILLVEDNEINRRFFINSLKLIGLSCDIAVNGLEAL-------------NACKIKDYHII 747
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MDC+MP M+GYEATRKIR+ E ++ H IIA+TAH +A++ +AGMD +L KP
Sbjct: 748 FMDCQMPEMDGYEATRKIRQLEAGSK-HTTIIAMTAHSMKGDANECFKAGMDDYLSKPFV 806
Query: 1120 RDHLMEAIK 1128
+ ++E ++
Sbjct: 807 FEQMVEMLQ 815
>gi|421098537|ref|ZP_15559206.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii str.
200901122]
gi|410798500|gb|EKS00591.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii str.
200901122]
Length = 819
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 149/302 (49%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + ++ +++ A
Sbjct: 422 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLL-GTTKLNDEQKEYIQILSISA 480
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L +E F + +L+++ DL +P+A +K + + L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKRIGLRL---EGK 537
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD+++L+QIL NL N +KFT+ G + + K S
Sbjct: 538 FEIQEYVYGDQLRLRQILWNLTGNGIKFTNHGEVVLNVSQKNIS---------------- 581
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+D+ ++EFT V D+G GIP EK+K VF+ + Q
Sbjct: 582 -----------------------KDKISIEFT--VSDSGIGIPLEKQKQVFDAFSQSDTS 616
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG + + KE G+ F F + I S + +
Sbjct: 617 TARKFGGSGLGLSITKQLVELQGGTLNLESKEG--YGSKFTFTITYGIPSESEIEKIFEA 674
Query: 653 EK 654
EK
Sbjct: 675 EK 676
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + + +ILVA+D+ + E L+ LG NG ++ +
Sbjct: 678 KDLESAYSNATSKSMRILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIEKM------ 731
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
Q D +D ILMD MP ++G EAT+ IR +K+N IIALTA + +
Sbjct: 732 QLDF-------FDMILMDIHMPEVDGIEATKWIR-SQKQNTGFPIIIALTADVIESNKEV 783
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ +L KPL+ L + + +
Sbjct: 784 YISKGMNDYLTKPLDLPLLKKTLDF 808
>gi|372487689|ref|YP_005027254.1| PAS domain S-box [Dechlorosoma suillum PS]
gi|359354242|gb|AEV25413.1| PAS domain S-box [Dechlorosoma suillum PS]
Length = 1281
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 150/312 (48%), Gaps = 55/312 (17%)
Query: 351 ASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR 410
A ++ EA +AE S KS AN SH+IR + I GL L E G E +
Sbjct: 802 ARTMELAEARDEAESASRAKSAFLANMSHEIRTPMNAILGLSHLLGREVGDARARE-RVD 860
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG--VEV 468
+++ A LL ++N ILD SK+EA K+ L +DF + L ++ +L P KG +E
Sbjct: 861 KIHGAATHLLNIINDILDLSKIEAEKLHLDMQDFLLARLFDNAENLLRPQLEAKGLRLER 920
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
LDP+ VL +GD + L+QIL N LSNAVKF+ +GHI+ +G LS
Sbjct: 921 HLDPALPPVL-----RGDAMHLQQILVNFLSNAVKFSDQGHIT----------LGARLLS 965
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
R ++ +E EV D G GI E++ +F+
Sbjct: 966 -------------------------------RSQSQVELRLEVADQGIGIAPEQQAALFQ 994
Query: 589 NYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
+ Q GGTGLGL I + L+RLMGGDI VD + G+ G+ F ++ L + + +
Sbjct: 995 AFEQADNSTTRKYGGTGLGLAISKRLIRLMGGDIG-VDSKPGQ-GSVFWISLRLEVADTA 1052
Query: 645 ANDNNTQGEKEL 656
A E+EL
Sbjct: 1053 AGTTAATAEQEL 1064
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 15/130 (11%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G +IL+A+D+ + + VA+ L G V E+G A+ L +SG +D
Sbjct: 1074 GCRILLAEDNALNQEVAQDLLHDAGLAVSVAEDGHQAVSLAQSG-------------GFD 1120
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+LMD MP ++G +ATR IRE +PI+A+TA E+ + +EAGM+ + KP
Sbjct: 1121 LVLMDVNMPHLDGLQATRAIRELP--GCADLPILAMTAGAFAEDRARCLEAGMNDFVAKP 1178
Query: 1118 LNRDHLMEAI 1127
+ + L +A+
Sbjct: 1179 VVPEVLYQAL 1188
>gi|163814849|ref|ZP_02206237.1| hypothetical protein COPEUT_00999 [Coprococcus eutactus ATCC 27759]
gi|158449788|gb|EDP26783.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Coprococcus eutactus ATCC 27759]
Length = 599
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 108/350 (30%), Positives = 170/350 (48%), Gaps = 61/350 (17%)
Query: 323 VMTVGVLISMLTFVFKSARAARKEMHLCASLI---KQMEATQQAERKSMNKSLAF----- 374
+M V + + L VF + + ++ +I KQ E ++ + ++ + A+
Sbjct: 164 LMDVEITMESLQKVFNTVMYKSEADYINMVVIDVTKQKETEEKLSKAIVDANAAYKTQAE 223
Query: 375 --ANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKV 432
AN SH+IR + GI G+++L + ++ NL CA+ LL L+N ILD SK+
Sbjct: 224 FLANMSHEIRTPINGILGMLQLTLMAEDLQADYRDNLITAKNCADTLLRLINDILDISKL 283
Query: 433 EAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQ 492
EAGK ++ EE FD+ +ED V P+A KG++ LD S GS + V+GD +++Q
Sbjct: 284 EAGKYKIKEETFDIRTAIEDTVAAQVPIATNKGLQ--LDCSFGSNIP-KLVRGDGQRIQQ 340
Query: 493 ILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDL 552
+L+ LLSNA+KFTSEG + V+ ++S G
Sbjct: 341 VLNCLLSNAIKFTSEGSVRVK-------------IASMDDG------------------- 368
Query: 553 EAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQ 608
EN ++ V DTG GI + +F + QV + GG+GLGL I +
Sbjct: 369 ---------ENKIKIRMAVADTGIGISEANMSKLFIRFSQVDASDTRKYGGSGLGLVITK 419
Query: 609 SLVRLMGGDIEIVDKENGERGTCFRFNVFL-AIREASANDNNTQGEKELA 657
+V LMGG+I + KE + G+ F + L I+ A A D Q ++E A
Sbjct: 420 QIVELMGGNITVQSKE--DIGSTFIVEIPLKVIKGADAADEFLQEKEEPA 467
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 75/133 (56%), Gaps = 15/133 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILVA+D + ++V L G + + ENG+ A++L ++ + YD
Sbjct: 478 RILVAEDEPVNQQVIGKLLGMAGFSYDIAENGQKAVELFKTKI-------------YDAA 524
Query: 1060 LMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
L D +MP+M+G AT++IRE E K + +PIIA+TA + ++ +E +D ++ KP
Sbjct: 525 LFDVQMPVMDGIAATQEIREIERKEKRKRLPIIAVTARAMFGDKERILENQLDDYIAKPY 584
Query: 1119 NRDHLMEAI-KYL 1130
N + +++ + KY+
Sbjct: 585 NLNDVVDTLNKYI 597
>gi|254467050|ref|ZP_05080461.1| sensor histidine kinase/response regulator [Rhodobacterales
bacterium Y4I]
gi|206687958|gb|EDZ48440.1| sensor histidine kinase/response regulator [Rhodobacterales
bacterium Y4I]
Length = 764
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 137/276 (49%), Gaps = 52/276 (18%)
Query: 370 KSLAFANASHDIRAALAGITGLIEL-CYVEAGPGSELETNLRQMNVCANDLLGLLNSILD 428
KS AN SH+IR + G+ G+ EL C E L + + LL ++N +LD
Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLCDTELDEEQRLYAS--TIKNSGEALLVIINDVLD 273
Query: 429 TSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRV 488
SK+EA K++L E FD+ L +VV L P A KG+ +++ D + ++ GD
Sbjct: 274 YSKIEADKLELHPEPFDLERCLHEVVMLLQPTARDKGIALLV---DYDLFLPTRFTGDPG 330
Query: 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKA 548
+++Q+L+NL NAVKFT EGH+++R + I +P C + N
Sbjct: 331 RIRQVLTNLAGNAVKFTKEGHVTLRV-----TGITSPD----------DKQCAVHVN--- 372
Query: 549 RGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG----GTGLGL 604
++DTG GIP+EK +F + QV++ GTGLGL
Sbjct: 373 ----------------------IEDTGIGIPQEKISHIFGEFNQVEDERNRQFEGTGLGL 410
Query: 605 GIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
I + L+ +MGG+I VD E G +G+CF F + L +
Sbjct: 411 AISKRLIEMMGGEI-WVDSEEG-KGSCFGFRLPLPV 444
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D I MD MP M+G EAT +IR+ E H+P++ALTAH +++ + AG+D +L K
Sbjct: 670 DLIFMDISMPKMDGKEATAEIRKIEAGTGRHVPVVALTAHAMAGDSEGILAAGLDHYLTK 729
Query: 1117 PLNRDHLMEAIK 1128
PL + + E I+
Sbjct: 730 PLRKALIHEKIR 741
>gi|411116397|ref|ZP_11388884.1| signal transduction histidine kinase [Oscillatoriales
cyanobacterium JSC-12]
gi|410712500|gb|EKQ70001.1| signal transduction histidine kinase [Oscillatoriales
cyanobacterium JSC-12]
Length = 870
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 148/283 (52%), Gaps = 37/283 (13%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + A+ + KS AN SH++R L I GL +L + E + L ++
Sbjct: 376 QAKELADSANYAKSEFLANMSHELRTPLNVILGLTQLLNRDRTLTREHQQYLETISRSGE 435
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS-DGS 476
LLGL+N +L+ SK+EAG++ +E F++ +LL+ + ++ H A+ K ++ ++ S D
Sbjct: 436 HLLGLINEVLEMSKIEAGRLTYLESTFNLHDLLDGLREMLHLRAISKDIQFKVESSPDLP 495
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+L +K D KL+QIL NLL NA+KFT +G + +R K A+ +
Sbjct: 496 LL----IKADEGKLRQILLNLLGNAIKFTDQGEVILRV---KSEAVDS------------ 536
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+N++ G+ + N A++ FEV+DTG GI + K +F+ + Q + G
Sbjct: 537 -------RNQQLEGEQDEDNG-----EAIKILFEVEDTGPGIAPDDLKRLFKPFEQTRSG 584
Query: 597 ---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GTGLGL I + V ++GGDI V + G RGT F F +
Sbjct: 585 MIASEGTGLGLAISRKYVHMLGGDI-TVHSQLG-RGTVFSFTI 625
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q+P+ +ILVA+D+ R V L +G +E NG+ A++L ++ PH
Sbjct: 651 QQPI--YRILVAEDNPANRLVLMTLLTKVGFDLEEAVNGQEAIELWQTW--------HPH 700
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMD 1111
+ I MD MP MNGYEATR+IR +E N+ IIALTA E+ ++ + +G D
Sbjct: 701 L-----IFMDVRMPFMNGYEATRQIRAQEPFNETQRTKIIALTASAFEEQREEALASGCD 755
Query: 1112 VHLGKPLNRDHLMEAIKY 1129
+ KP + E I +
Sbjct: 756 DFIRKPFKAQEIFEKIAH 773
>gi|294649346|ref|ZP_06726778.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194]
gi|292824786|gb|EFF83557.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194]
Length = 937
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 141/300 (47%), Gaps = 52/300 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I +A QA + +KS+ AN SH++R L I G I L + +E L+ +
Sbjct: 273 ITYRQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIR 332
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N++LD SK++AGK++L FD+ E + DV+D+ P+A +K + + +
Sbjct: 333 KSSAHLLALINNVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ V GD ++ KQIL+NL+SNA+KFT +G I VR ++ IG
Sbjct: 393 ENIP---QHVVGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEDDD-IG---------- 438
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
CL + F V D+G G+ RK +FE++ Q
Sbjct: 439 -----QCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQG 468
Query: 593 ---VKEGEGGTGLGLGIVQSL-VRLMGGDIEIVDKEN---GERGTCFRFNVFLAIREASA 645
V GGTGLGL I + L V LM G I D + E+G+ F F + E A
Sbjct: 469 DASVTRQFGGTGLGLAISKQLVVHLMRGQIGFEDNQERAPTEKGSTFWFTAAFKVEEEDA 528
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G +L DD + V E L L T +G+ A+ L++ + + +P P+
Sbjct: 662 QGLHVLAVDDHLPNLIVLEALLGELNVTTTKALSGQKAIDLIQERIEQK----SP---PF 714
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E + +PIIALTAH +E K ++ GM+ ++
Sbjct: 715 DLVFMDIQMPVMSGIDTTRAIRSLESTLDTGMQLPIIALTAHALADEKQKLLKVGMNDYV 774
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + +++ +
Sbjct: 775 TKPIQMEQIIQIL 787
>gi|428213831|ref|YP_007086975.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002212|gb|AFY83055.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 2926
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 148/290 (51%), Gaps = 38/290 (13%)
Query: 351 ASLIKQME-ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
A L +Q+E A + A++ + KS AN SH++R+ L I G +L E + N+
Sbjct: 2434 AELYQQVEKAREAADKANQAKSAFLANMSHELRSPLNAILGFAQLLLSNPSLSQEAKENV 2493
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
++ LL L+N ILD +K+E+G+ ++E +F++ LL+D+ +F A KG+ V
Sbjct: 2494 AIIHRSGEHLLTLINDILDLAKIESGRTTIVETNFNLSHLLDDLQSMFRLKAQSKGLGFV 2553
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
++ S V ++ ++ D +KL+Q+L NLL NA+KFT G I V ++ + G SLS
Sbjct: 2554 VERSP-EVPEY--IRTDEIKLRQVLINLLGNAIKFTQRGQIYV--AMRGITPEGRSSLSV 2608
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
Q+++ L EV DTG GI +E+ +F+
Sbjct: 2609 PDTLEPQTLNLL---------------------------CEVSDTGPGIAQEELDHLFQA 2641
Query: 590 YVQVK---EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+VQ E GTGLGL I + V LMGG IE V + GE G+ F F +
Sbjct: 2642 FVQTSTGLEAREGTGLGLSISRKFVELMGGSIE-VRSQIGE-GSTFSFEI 2689
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ADD R L+ LG + NG+ + L PH+ I
Sbjct: 2719 RILIADDRPDNRTFVIKCLQPLGFDLLESSNGQETIALWEEW--------EPHL-----I 2765
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+M+GYEAT++I+ K I+ALTA +E ++ +G D + KP
Sbjct: 2766 FMDLRMPVMDGYEATQQIKGSIKGQGT--AIVALTASYLNQENALSLSSGFDGFIRKPFR 2823
Query: 1120 RDHLMEAI 1127
L + +
Sbjct: 2824 DTELFDCL 2831
>gi|400289098|ref|ZP_10791130.1| multi-sensor hybrid histidine kinase [Psychrobacter sp. PAMC 21119]
Length = 1188
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 142/304 (46%), Gaps = 57/304 (18%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R A EM + I+ A A S KS AN SH++R L I G I L
Sbjct: 278 RLAFDEMEMQNISIR--NARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLLARHGE 335
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
E + ++ + + LL L+N +LD SK+EAGK+ L +FD+ + + DVVD+ PV
Sbjct: 336 LNPEQDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPV 395
Query: 461 AMRKGVEV-VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
+ KG+ + VL +D + +V GD ++LKQ+L+N++ NA+KFT G + VR
Sbjct: 396 SSEKGLRMAVLFYNDVPM----RVNGDALRLKQVLTNIVGNAIKFTDSGDVVVRV----- 446
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
SL R +L V D+GKGI
Sbjct: 447 ------SLDDHRDNYL--------------------------------MISVQDSGKGIS 468
Query: 580 KEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVD--KEN-GERGTCF 632
+K +F+++ Q + GGTGLGL I + L RLMGGDI D +EN +G F
Sbjct: 469 LADQKMLFQSFSQGDPSITRQYGGTGLGLVISKQLTRLMGGDIGFYDNAQENIANQGATF 528
Query: 633 RFNV 636
F +
Sbjct: 529 WFRM 532
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D I MD +MP M+G+EA R+IR E + IPIIALTAH +E DK + +G++ ++GK
Sbjct: 796 DLIFMDIQMPRMSGHEAARQIRNIENADN-RIPIIALTAHGLADERDKLMASGINDYVGK 854
Query: 1117 PLNRDHLMEAIK 1128
P+++ L++ ++
Sbjct: 855 PISQPQLLQVLQ 866
>gi|310640534|ref|YP_003945292.1| sensor protein [Paenibacillus polymyxa SC2]
gi|386039674|ref|YP_005958628.1| phytochromeB [Paenibacillus polymyxa M1]
gi|309245484|gb|ADO55051.1| Sensor protein [Paenibacillus polymyxa SC2]
gi|343095712|emb|CCC83921.1| phytochromeB [Paenibacillus polymyxa M1]
Length = 891
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 147/299 (49%), Gaps = 55/299 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+ A + AER KS + SH++R + GI G+ L + E + + + +
Sbjct: 629 IRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLL-ADTELDEEQRSYIDIITSSS 687
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV---VLDPS 473
N L+ +LN ILD SK+EAGKM L+ E F + +++ V DLF AM KG+++ V
Sbjct: 688 NALMQILNEILDLSKIEAGKMSLLHESFVLEDVVGSVADLFMTQAMEKGIQLEWHVDQEM 747
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
G ++ GD V+++QIL NL+SNA+KFT GH+++
Sbjct: 748 PGMLV------GDHVRIRQILVNLVSNAIKFTERGHVNI--------------------- 780
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
F++ + Y +K + +E F V DTG GIP +++ +F+ + Q+
Sbjct: 781 FVERKA---YSRRKKKCLIE---------------FSVTDTGIGIPADRQHLLFQPFSQL 822
Query: 594 KEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
GGTGLGL I ++LV+LMGG I + E RG FRF + L + E N
Sbjct: 823 HPALNRKYGGTGLGLSICKNLVKLMGGSIGVDSDE--ARGATFRFQLDLKLPEGQTLAN 879
>gi|254428281|ref|ZP_05041988.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Alcanivorax sp. DG881]
gi|196194450|gb|EDX89409.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Alcanivorax sp. DG881]
Length = 641
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 152/311 (48%), Gaps = 51/311 (16%)
Query: 351 ASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR 410
A++ + +A +QAE S KS A SH++R + G+ G+++L A G + E
Sbjct: 240 AAMTELQQAHRQAETASQAKSDFLAMMSHELRTPMNGVLGMLQLLEETAQNGEQQEYTEA 299
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + LL ++N ILD S++EAG+M L F++ LL++ V F VA KG+ + L
Sbjct: 300 ALESTGH-LLDVINDILDFSRIEAGRMDLDPSFFELQPLLQNCVATFRYVAESKGLYLRL 358
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+ + VL + D +L+Q+LSNL+SNAVKFT EG ++V V
Sbjct: 359 EGDE--VLAGKVTRSDPTRLRQVLSNLISNAVKFTQEGGVTVTVSV-------------- 402
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+ RGD ++ + V DTG GIP+ KR ++F+ +
Sbjct: 403 ---------------RPVRGDW------------LDLSIAVADTGIGIPEAKRSSLFKAF 435
Query: 591 VQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
Q+ GGTGLGL I + L ++GG++ + +E+ G+ F ++ L RE A
Sbjct: 436 SQIDSSTSRRFGGTGLGLAIARRLSEMLGGNLSVGSQEDA--GSVFTLSLRLFFRE-QAE 492
Query: 647 DNNTQGEKELA 657
+ G LA
Sbjct: 493 AGGSAGRHRLA 503
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 21/134 (15%)
Query: 994 KPLRGKKILVADD---SMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGA 1050
+ L G +LV D+ +M+ RR+ E +G TV NGE AL+ R QRD
Sbjct: 508 QALHGLVLLVEDNVVNAMVARRILE----QMGVTVVTASNGEEALEKAR-----QRD--- 555
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
+D ILMD +MP+M+G EATR++R+ E ++ + +P++ALTA+ EE ++ + G
Sbjct: 556 -----FDCILMDVQMPVMDGLEATRRLRQWEREQGRAPMPVVALTANAMHEERERCLAVG 610
Query: 1110 MDVHLGKPLNRDHL 1123
M+ HL KP R L
Sbjct: 611 MNSHLAKPFRRQQL 624
>gi|347756684|ref|YP_004864247.1| Signal transduction histidine kinase [Candidatus
Chloracidobacterium thermophilum B]
gi|347589201|gb|AEP13730.1| Signal transduction histidine kinase [Candidatus
Chloracidobacterium thermophilum B]
Length = 897
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 161/343 (46%), Gaps = 67/343 (19%)
Query: 312 RTSKRALILLIVMTVGVLISMLTFV-FKSARAARKEMHLCASLIKQMEATQQAERKSMNK 370
R+S AL LI+ +VG++ ++L F AR E++ +L+ Q+E + A +
Sbjct: 166 RSSAEALEWLIIASVGIIAALLVVAYFIVAR----ELNKRRTLLSQLEYARDAALTLARR 221
Query: 371 SLAF-ANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ-MNVCANDLLGLLNSILD 428
F AN SH+IR + GI G EL P + + +L + + A LL ++N ILD
Sbjct: 222 QSDFLANMSHEIRTPMNGIMGTSELLL--RTPLAPNQKDLAETIRYSAESLLVIINDILD 279
Query: 429 TSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV----K 484
SK+EAGK+ DFD+ +E V+ A +K +E+V L + V +
Sbjct: 280 FSKIEAGKLDFQVSDFDLRATVEQAVETVAATARKKSLELV-------TLVYRDVPEQLR 332
Query: 485 GDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYK 544
GD +L+Q+L NL+ NAVKFT G + VR + +A
Sbjct: 333 GDAGRLRQVLLNLVGNAVKFTDRGEVVVRVTKQAETA----------------------- 369
Query: 545 NKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGT 600
+ F V DTG GIPKE ++ +FE + QV GGT
Sbjct: 370 ------------------THVTLKFSVTDTGIGIPKEFQEDIFEAFAQVDASRSRRFGGT 411
Query: 601 GLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
GLGL I + LV++MGG+I V+ E G +G+ F F L EA
Sbjct: 412 GLGLAISKRLVQMMGGEIG-VESEVG-KGSTFWFTATLEKAEA 452
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 16/139 (11%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
SQ P K +L+ +D+ + ++V L LG V NG AL+ +++
Sbjct: 621 SQGHSP---KTVLLVEDNPINQQVVRRMLEILGYQVCVAVNGFEALERLQTQ-------- 669
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
P D ILMDC++P M+GY AT+ IRE+E+ H+PIIALTA+ E D+ + AG
Sbjct: 670 -----PPDAILMDCQLPEMDGYTATQHIREQERTLGRHVPIIALTANALAGERDRCLAAG 724
Query: 1110 MDVHLGKPLNRDHLMEAIK 1128
MD +L KP L E ++
Sbjct: 725 MDDYLAKPFRMKDLEEVMQ 743
>gi|256827994|ref|YP_003156722.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
gi|256577170|gb|ACU88306.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
Length = 758
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 150/315 (47%), Gaps = 55/315 (17%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG-PG-SELETNL 409
+L++ A ++A+ + KSL A+ SH+IR L GI GL EL G PG E T +
Sbjct: 369 TLLQLQSARRKADEANEAKSLFLAHMSHEIRTPLTGIMGLAELAIGNPGNPGVQEYLTLI 428
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
RQ +LL ++N ILD SKVEAGK++L + F+ +LE + F P KGV +
Sbjct: 429 RQ---SGQNLLHIINDILDFSKVEAGKIELQKNRFNARSMLEATIAFFKPGIREKGVTLS 485
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
L ++ V GD +++QI NL+ NAVKFT +G I +R
Sbjct: 486 LVLAEELP---QAVVGDENRIRQIFFNLVGNAVKFTEKGKIELR---------------- 526
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
++ L + AR M FE+ D+G GIP +K+ ++FE
Sbjct: 527 --------LTGLTSEENSAR---------------MMLHFEIMDSGCGIPADKQDSIFER 563
Query: 590 YVQV----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL--AIREA 643
+ Q GTGLGL IV+ L+ MGG I + E GT F FN+ + A+ E
Sbjct: 564 FTQAARFPTRTYQGTGLGLAIVKQLIEAMGGSIGVRSTEG--VGTTFFFNIPVERALPEE 621
Query: 644 SANDNNTQGEKELAG 658
A D + E + G
Sbjct: 622 PAQDPDLGDELLVQG 636
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 24/167 (14%)
Query: 968 NSSGEGSSRYKQTEIEEEDGERSQAQKP-------LRGKKILVADDSMMLRRVAEINLRH 1020
++ G G++ + +E E AQ P ++G +LV +D+ + R + +L
Sbjct: 600 STEGVGTTFFFNIPVERALPEEP-AQDPDLGDELLVQGLSVLVTEDNPINRLFLQKSLEK 658
Query: 1021 LGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREE 1080
LG V NG+ AL L+++ D +LMD +MP+M+G ATR IRE
Sbjct: 659 LGHRVICAVNGQEALDLLQTA-------------TVDCVLMDIQMPVMDGSMATRHIRE- 704
Query: 1081 EKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
R +P+IALTAH + +K +E G D +L KP++ L + I
Sbjct: 705 --RFGHSLPVIALTAHALHGDREKYLEDGFDEYLAKPVSIKDLTKII 749
>gi|225425392|ref|XP_002276961.1| PREDICTED: histidine kinase 3 [Vitis vinifera]
gi|297738469|emb|CBI27670.3| unnamed protein product [Vitis vinifera]
Length = 1039
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 175/357 (49%), Gaps = 27/357 (7%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
M ++AE + KS A SH+IR + G+ G++ + ++ + +R
Sbjct: 431 MMLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHML-IDTDLDVTQQDYVRTAQASG 489
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
L+ L+N +LD +K+E+GK++L E FD+ +L+DV+ LF + KGVE+ + SD
Sbjct: 490 KALVSLINEVLDQAKIESGKLELEELQFDLQAILDDVLSLFSGKSQEKGVELAVYISD-R 548
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHI--SVRACVKKPSAIGNPSLSSSRHGF 534
V K + GD + +QI++NL+ N++KFT +GHI ++ + +I + SSS++
Sbjct: 549 VPKM--LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTIHLVEELMDSIEVETESSSKNTL 606
Query: 535 ----LQSISCLF--YKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
+ C + ++ G +++ D + V+DTG GIP+E + VF
Sbjct: 607 SGLPVADRRCSWEGFRTFNQEGLTSPFSSSSSD--LIHLIVSVEDTGVGIPEEAQSRVFT 664
Query: 589 NYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
++QV GGTG+GL I + LV LM G+I V + N G+ F F + +
Sbjct: 665 PFMQVGPSISRIHGGTGIGLSISKCLVGLMNGEIGFVSRPN--VGSTFTFTAVFSGGCSK 722
Query: 645 ANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHE 701
+N+ Q S A ++ Q M V P+P +R R +I G R E
Sbjct: 723 SNEYKCQP----TNNQSNAVSSEFQGMAALVVDPNP---VRAKVSRYHIQRLGIRVE 772
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 30/150 (20%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LRG+KILV DD+ + RVA L+ GA V ++G++A+ L++ PH
Sbjct: 890 LRGRKILVVDDNNVNLRVAAGALKKYGADVVCADSGKSAIPLLK----------PPH--D 937
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR------------------NQVHIPIIALTAHI 1097
+D MD +MP M+G+EAT IRE E+ + H+PI+A+TA +
Sbjct: 938 FDACFMDIQMPEMDGFEATGIIREMERNVNSRIQHGEVSVEAYANISNWHLPILAMTADV 997
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ + GMD ++ KP + L +
Sbjct: 998 IQATHEECLRCGMDGYVSKPFEAEQLYREV 1027
>gi|159045872|ref|YP_001534666.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae
DFL 12]
gi|157913632|gb|ABV95065.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae
DFL 12]
Length = 819
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 137/289 (47%), Gaps = 51/289 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE + KS AN SH++R + G+ + EL E+ E + +
Sbjct: 201 ARTRAEAANRAKSAFLANMSHELRTPMNGVVAMSELLN-ESALDEEQALYVETIRKSGEA 259
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N +LD SK+EA K+QL FD+ L+ DVV L P A K V+++L D +
Sbjct: 260 LLVIINDVLDYSKMEAEKLQLHPAPFDLERLMHDVVMLTKPTAQEKSVDLML---DYDIF 316
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
S GD+ +L+Q+++NLL NAVKFT EGH+ +R IG P
Sbjct: 317 LPSHFIGDQGRLRQVMTNLLGNAVKFTLEGHVLIR-------VIGMPP------------ 357
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG 598
++ E ++DTG GI E +F + Q ++
Sbjct: 358 ----------------------EDGTQEIIVSIEDTGIGIAPEMIDHIFGEFNQAEDERN 395
Query: 599 ----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
GTGLGL I + L+ LMGG+I VD E GE G+CF F + L + A
Sbjct: 396 RAFEGTGLGLAITKQLIDLMGGEI-WVDSEIGE-GSCFSFRIALPLDAA 442
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 14/135 (10%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
++A+ P+R +L A+D+ + V ++ L + NGE A+ + + R
Sbjct: 679 AEAEVPIRKTSVLAAEDNKTNQLVFRKMVKGLNIDLRFANNGEEAV----AAFEEDRP-- 732
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEA 1108
D I MD MP M+G EAT+KIR E + +PI ALTAH +A++ + A
Sbjct: 733 -------DMIFMDISMPKMDGMEATQKIRAREAELSLPPVPICALTAHAMDGDAERILAA 785
Query: 1109 GMDVHLGKPLNRDHL 1123
G+D +L KPL + +
Sbjct: 786 GLDHYLTKPLKKTEI 800
>gi|317152269|ref|YP_004120317.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
gi|316942520|gb|ADU61571.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
Length = 922
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 140/291 (48%), Gaps = 57/291 (19%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
+L+ EA +QA R K AN SH++R L G+ G+++L V A G +L N+
Sbjct: 536 ALVVAKEAAEQANRA---KDEFLANISHEVRTPLNGVMGMLQLIRVSATSGEQL-ANVDI 591
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG--VEVV 469
+ +LL +LN +LD SK+EAGK+ L E FD+ L+ V LF A KG ++
Sbjct: 592 AIQSSRNLLRVLNDVLDFSKIEAGKLDLYNEPFDLAGLMRQCVSLFKQQADEKGLVLDSR 651
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
+DPS GD +++Q+L NLL NA+KFT G I++ A A+ +P
Sbjct: 652 IDPSARECY-----LGDEGRIRQVLFNLLGNAIKFTMYGSITLEA-----YALAHPEPGC 701
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
R LF F V DTG GIP K +F++
Sbjct: 702 ER---------LF--------------------------FSVTDTGVGIPDSKVDYIFDS 726
Query: 590 YVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ QV G GLGL IV+ L+RL+GG + +VD E G GT FNV
Sbjct: 727 FTQVDSSLSRKYKGVGLGLPIVKRLIRLLGGTL-VVDSEMGA-GTTILFNV 775
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 17/130 (13%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
PLR +L+ +D + +A L +LG TV ENGE LQ++R +R
Sbjct: 799 PLR---VLLVEDERVNMLMARRLLENLGHTVTCAENGEKCLQVLRG----ER-------- 843
Query: 1055 PYDYILMDCEMPIMNGYEATRKIR-EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
+D ILMD +MP+MNG E T IR E+ R+ IPI+ALTAH + + + ++AGM+ +
Sbjct: 844 -FDVILMDIQMPVMNGMEVTHLIRNSEDFRHVADIPIVALTAHATRRDREAALKAGMNEY 902
Query: 1114 LGKPLNRDHL 1123
+ KP ++HL
Sbjct: 903 ISKPFEKEHL 912
>gi|440749012|ref|ZP_20928262.1| PAS/PAC domain protein [Mariniradius saccharolyticus AK6]
gi|436482714|gb|ELP38812.1| PAS/PAC domain protein [Mariniradius saccharolyticus AK6]
Length = 1049
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 153/307 (49%), Gaps = 62/307 (20%)
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS 403
RK M +LI ME QA+ S+ KS AN SH+IR L G+ G +L +
Sbjct: 533 RKNME--KNLIFSME---QAKEASVAKSEFLANMSHEIRTPLNGVIGFSDLLM-----KT 582
Query: 404 ELETN----LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHP 459
LE N L+ + N LLGL+N ILD SK+EAGK++L +E F+V ++ + + + P
Sbjct: 583 NLEDNQKGYLKSIIQSGNLLLGLINDILDFSKIEAGKLELSQEWFNVRDVAAETLKIIQP 642
Query: 460 VAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
V K +++ L+ + V KF V+GD ++KQIL NLLSNA KFT EG I++ V
Sbjct: 643 VVDEKKLQLQLN-VNTDVPKF--VQGDLTRIKQILINLLSNAGKFTHEGKIAMEISVD-- 697
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
+L SS KKA F V DTG GI
Sbjct: 698 ------NLRSS-------------ATKKA------------------LIFSVIDTGIGIS 720
Query: 580 KEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
KEK++T+FE + Q GGTGLGL I L+ LM +E+ + E G+ G+ F F
Sbjct: 721 KEKQQTIFEAFAQEDTSTTRKYGGTGLGLTICSKLLELMKSKLEL-ETEVGQ-GSTFFFT 778
Query: 636 VFLAIRE 642
+ L E
Sbjct: 779 LELPFAE 785
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 21/136 (15%)
Query: 988 ERSQAQKPL-RGK-KILVADDS---MMLRRVAEINLRHLGATVEACENGEAALQLVRSGL 1042
ER + + P +G K+L+ DD+ M+L + L EA EA Q R
Sbjct: 801 EREEKETPASKGTYKVLLVDDNPVNMLLAKSIVKKLLPSSEISEAYNGAEAVTQYKRE-- 858
Query: 1043 NDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEA 1102
+P D I MD +MP ++GYEAT++IR E+ H PI+ALTA E
Sbjct: 859 -----------VP-DIIFMDIQMPEVSGYEATKQIRVLEQDR--HTPIVALTAGTVKGEY 904
Query: 1103 DKTIEAGMDVHLGKPL 1118
D+ IEAGMD +L KP+
Sbjct: 905 DRCIEAGMDDYLSKPV 920
>gi|237653493|ref|YP_002889807.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
gi|237624740|gb|ACR01430.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
Length = 1407
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 132/273 (48%), Gaps = 52/273 (19%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH+IR + I GL L + G + + L Q+ LLGL+N ILD
Sbjct: 784 KSAFLANMSHEIRTPMNAIIGLTHLLRKD-GVTPQQDGRLEQIEASGRHLLGLINDILDL 842
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAGK+ L EDF + +L+ V L P A KG+ + L DG + + ++GD ++
Sbjct: 843 SKIEAGKLDLALEDFHLSAVLDHVASLIRPSAQSKGLHIEL---DGDAVP-TWLRGDPMR 898
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+Q L NL NAVKFT G I +RA + K A G
Sbjct: 899 LRQCLFNLAGNAVKFTERGSIVLRAKLLKDGAEG-------------------------- 932
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLG 605
++ FEV+DTG G+ + + +F + Q + G GGTGLGL
Sbjct: 933 ---------------LQVRFEVEDTGIGVTPAQGQRLFHVFQQAEVGTTRKYGGTGLGLA 977
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ ++L ++MGG+ + D GE G+ F F V L
Sbjct: 978 LTRNLAQMMGGEAGM-DSIPGE-GSTFWFTVLL 1008
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 29/173 (16%)
Query: 971 GEGSSRYKQTEIEEEDG-------ERSQAQKPLR----GKKILVADDSMMLRRVAEINLR 1019
GEGS+ + ++ G R+ A++ LR G ++L+ +D+ + R VA L
Sbjct: 997 GEGSTFWFTVLLQRGHGIMPAPTARRADAERALRHEQAGTRVLLVEDNPINRLVALELLH 1056
Query: 1020 HLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079
+G TVE E+G AL+ V++ Y ILMD +MP+M+G +ATR IR
Sbjct: 1057 AVGLTVETAEDGAEALERVKAA-------------DYALILMDMQMPVMDGLDATRAIRA 1103
Query: 1080 -EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
R++ PI+A+TA+ ++ +EAGM+ + KP+ + L + K+L
Sbjct: 1104 LPGWRDK---PILAMTANAFDDDRRTCVEAGMNDFIAKPVEPERLYATLHKWL 1153
>gi|392378907|ref|YP_004986066.1| putative histidine kinase [Azospirillum brasilense Sp245]
gi|356881274|emb|CCD02259.1| putative histidine kinase [Azospirillum brasilense Sp245]
Length = 979
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 143/308 (46%), Gaps = 55/308 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q AER S+ KS A SH+IR + G+ G + L ++ G+E + + A D
Sbjct: 455 AKQAAERASLAKSEFLAMMSHEIRTPINGVIGTLGL-IMDHQMGAEQKRLVSIARRSAED 513
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE--VVLDPSDGS 476
LL +LN ILD SK+EAG+++ + + +L+E VVDL P A KG++ V +DP
Sbjct: 514 LLEILNDILDLSKMEAGRLEFEDSAVHLHDLVESVVDLITPAAQEKGIDIHVSVDPE--- 570
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V+GD + +QIL NL NAVKFT +GHI +
Sbjct: 571 --LPQYVRGDEGRTRQILLNLAGNAVKFTEKGHIRIH----------------------- 605
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
++AA+ D + V DTG GIP +++ VF + Q+
Sbjct: 606 ------------------LDAARTDAAGKQVRVSVLDTGIGIPFDRQHEVFAEFNQLDRS 647
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GGTGLGL I + LV LMGG I +G+ F F LA E A+ TQ
Sbjct: 648 YARRFGGTGLGLAICKRLVSLMGGTIGF--SSEPAQGSTFWFTWPLAAAEHPADSVLTQS 705
Query: 653 EKELAGGD 660
EL G+
Sbjct: 706 GPELDWGE 713
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R ++LVA+D+ + + L +G V+ NG A+Q AP L +
Sbjct: 720 RCPRVLVAEDNATNQLIIRTLLERVGCRVDTVANGVEAVQ------------AAP--LGF 765
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D I MD +MP M+G+EAT +IR + PI+ALTA+ + + EAGMD L K
Sbjct: 766 DIIFMDLQMPEMDGFEATLRIRSSSFDRRC--PIVALTANALEDARQRCEEAGMDGFLLK 823
Query: 1117 PLNRDHLMEAI 1127
P+ L AI
Sbjct: 824 PVKPQALQHAI 834
>gi|50086083|ref|YP_047593.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
gi|49532059|emb|CAG69771.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
Length = 932
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 140/298 (46%), Gaps = 51/298 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A QA + KS+ AN SH++R L I G I L + +E ++ + +
Sbjct: 276 QARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQQNLSNEQRLYMQTIRKSSA 335
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +LD SK++AGK++L F++ E + DV+D+ P+A +K +++ D
Sbjct: 336 HLLALINDVLDFSKIDAGKLELETAAFNLEEAIFDVMDMLSPLAAQKHIDMAFYYGDNIP 395
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
V GD +++KQIL+NL+SNA+KFT +G I VR ++
Sbjct: 396 ---EIVIGDALRVKQILTNLISNAIKFTPDGEIIVRVRMEHDDI---------------- 436
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
CL + F V D+G G+ RK +FE++ Q V
Sbjct: 437 DQCLLH-------------------------FSVQDSGIGLSGTDRKKLFESFSQGDASV 471
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN---GERGTCFRFNVFLAIREASANDN 648
GGTGLGL I + LV+LM G I D + E+G+ F F +EA D+
Sbjct: 472 TRQFGGTGLGLAISKQLVQLMHGHIGFEDNQERAPTEKGSTFWFTAQFKTQEAHIIDH 529
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 9/133 (6%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
RG +L DD + V E L L T +G+ AL ++ + P+
Sbjct: 659 RGLHVLAVDDHLPNLIVLEALLSELNVTTSKALSGQEALNIIEQRIEQNEK-------PF 711
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D + MD +MP+M+G + TR IR E Q+ +PIIALTAH +E K ++ GMD ++
Sbjct: 712 DVVFMDIQMPVMSGIDTTRAIRSLESTLDTQMRLPIIALTAHALADEKQKLLKVGMDDYV 771
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + ++ +
Sbjct: 772 TKPIQMEQIIHIL 784
>gi|410860455|ref|YP_006975689.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii AltDE1]
gi|410817717|gb|AFV84334.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii AltDE1]
Length = 959
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 138/285 (48%), Gaps = 51/285 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA ++AE + KS A+ SH+IR + GI+G+++L G E + L
Sbjct: 565 EAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLLASSELTG-EQKHYLSLAKFSIQ 623
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK+EAG++Q+ E FD+ E LE++ + + KG+E+ +
Sbjct: 624 GLLHIVNDILDFSKIEAGQLQIEESPFDILESLENLQSQYAILCQEKGLELHFH---FDL 680
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ V+GD V+ +QILSNLL NAVKFT G+I V C++K
Sbjct: 681 QGYHVVQGDDVRFRQILSNLLGNAVKFTDTGYIEVTTCIEK------------------- 721
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
+ +N + V DTG GI ++K+ T+F+ + Q
Sbjct: 722 ----------------------KPDNTLRLLCSVKDTGIGIAQDKQSTIFDVFTQEDLST 759
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + L LMGGDI++ + G+ F F + L
Sbjct: 760 TRKFGGTGLGLSISKQLCGLMGGDIKLESVKGN--GSIFSFTIQL 802
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 22/174 (12%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDG------ERSQAQKPLRGKK--ILVADDSMMLRRVAE 1015
+K + G GS ++EE D + A K ++GKK +L+ +D+ + + +A+
Sbjct: 784 IKLESVKGNGSIFSFTIQLEEADESLIKPIHYNNASKTVKGKKRKVLIVEDNDINQVIAK 843
Query: 1016 INLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075
+L + T + ++G ALQ LN + + +D ILMDC+MP M+G+EAT+
Sbjct: 844 QHLSN--HTTLSAKSGVEALQ----ALNKMK-------VTFDVILMDCQMPEMDGFEATK 890
Query: 1076 KIREEEKRNQ-VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+IR E ++ +++PIIALTA+ + ++ + AGMD +L KP + + L + ++
Sbjct: 891 RIRNGEAGSRYLNVPIIALTANAMKGDKERCVSAGMDDYLSKPFDAEDLTDKVE 944
>gi|333983791|ref|YP_004513001.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Methylomonas methanica MC09]
gi|333807832|gb|AEG00502.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Methylomonas methanica MC09]
Length = 1677
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 135/281 (48%), Gaps = 68/281 (24%)
Query: 351 ASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL- 409
A L MEA Q + KS A SH+IR + G+ G+ EL L TNL
Sbjct: 298 AELRHAMEAAQAGSKA---KSEFLATMSHEIRTPMNGVMGMTELL---------LNTNLS 345
Query: 410 -RQMNVC------ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAM 462
RQ + A LL ++N+ILD SK+EAGK+QL+ +FDV +LLED L A
Sbjct: 346 ERQHRLADTAYRSAKSLLSIINNILDFSKIEAGKLQLLAGEFDVRQLLEDTTHLLADQAH 405
Query: 463 RKGVEVVLD-PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
RKGVE++L P D + GD +L+Q+L NLL NA+KFT +G + ++
Sbjct: 406 RKGVELILSIPVDFDCVAI----GDSERLRQVLVNLLGNAIKFTEQGEVQLKL------- 454
Query: 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
PSL+ S + +E F V DTG GI +E
Sbjct: 455 --TPSLNPS------------------------------NPEKIELLFNVIDTGPGIDEE 482
Query: 582 KRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDI 618
++ +F+++ Q + GGTGLGL I + LV LM D+
Sbjct: 483 FQQYIFDSFTQQDGSITRRYGGTGLGLTISRQLVELMDSDL 523
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 15/143 (10%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
G + K LRG+ IL+A+D+++ + VA+ L +G V NG+ A+ L
Sbjct: 694 GTKKTTGKGLRGR-ILLAEDNLVNQEVAKGFLEQIGCRVYLANNGQEAVDLALER----- 747
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTAHISGEEADKT 1105
+D ILMDC MP+++G+ AT IR+ E+++ + PIIALTA + ++
Sbjct: 748 --------TFDIILMDCHMPVLDGFSATISIRQHEQQSGKALTPIIALTADVQKGVEEQC 799
Query: 1106 IEAGMDVHLGKPLNRDHLMEAIK 1128
++ GM+ +L KP + + + +K
Sbjct: 800 LQCGMNDYLSKPFSFAQIEQTLK 822
Score = 47.4 bits (111), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 977 YKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ 1036
Y + E + + + L ++ILV DD R + NL+ +G + +G AL
Sbjct: 961 YSSPGVRENTHDIAGTEAELNHEQILVVDDDPNFRLITCENLKAVGFEIVEAHSGNDALN 1020
Query: 1037 LVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAH 1096
+++ ++P D I++D M ++G+E + +R + R IPII T
Sbjct: 1021 KLKT------------VMP-DLIMLDAMMDDLDGFETCKALRAD--RTFADIPIIMSTGL 1065
Query: 1097 ISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
E ++ + G + KPLN L+ I++L
Sbjct: 1066 DDIESINRAYKVGASDFVIKPLNYALLVHHIRFL 1099
>gi|254457181|ref|ZP_05070609.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
gi|373867992|ref|ZP_09604390.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
gi|207085973|gb|EDZ63257.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
gi|372470093|gb|EHP30297.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
Length = 1127
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 152/303 (50%), Gaps = 59/303 (19%)
Query: 351 ASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL-ETNL 409
A+ ++ +EA + AE KS A SH+IR + G+ G++ L ++L ET
Sbjct: 533 AAELELIEANEIAEESVKAKSEFLATMSHEIRTPMNGVIGMLGLLM-----NTKLDETQR 587
Query: 410 RQMNVC---ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV 466
RQ ++ A LL L+N ILD SK+EA KM+L DF++ + LE D A KG+
Sbjct: 588 RQASLAEGSAKALLTLINDILDFSKLEAEKMELDNIDFNLRDELETFRDTIAIKAQEKGI 647
Query: 467 EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPS 526
EV+LD SD +K + D +++QIL N++ NAVKFTS+GH+ ++A +
Sbjct: 648 EVILDTSD---IKTDIINADLGRIRQILFNIVGNAVKFTSKGHVLIKASLTL-------- 696
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTV 586
++ VNA ++ DTG GIP +K +
Sbjct: 697 -------------------------VDKVNA--------RLILKMSDTGIGIPNDKLDRL 723
Query: 587 FENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
FE++ QV GGTGLGL IVQ L LMGG I++ K + G+ F ++ + + +
Sbjct: 724 FESFSQVDASTTRKYGGTGLGLAIVQKLCSLMGGKIDV--KSDLGHGSTFTVDIGVKLSK 781
Query: 643 ASA 645
+S+
Sbjct: 782 SSS 784
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 12/124 (9%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+ K+L+ +D+ + VA+ L G + NG AL+L++ Y
Sbjct: 798 KNTKVLLVEDNQTNQIVAQGILNSFGLNADVANNGIEALELLKDSAK-----------KY 846
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +LMDC+MP ++GY+ TR IR+ + + + IPIIA+TA+ + +K AGMD +L
Sbjct: 847 DVVLMDCQMPELDGYDTTRAIRDAKAGKAYISIPIIAMTANAMAGDKEKCSIAGMDDYLS 906
Query: 1116 KPLN 1119
KPL+
Sbjct: 907 KPLD 910
>gi|254465258|ref|ZP_05078669.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
Y4I]
gi|206686166|gb|EDZ46648.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
Y4I]
Length = 985
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 134/283 (47%), Gaps = 53/283 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA AE KS AN SH+IR + GI G+ +L EA ++ + N+ + A
Sbjct: 596 EAKLAAEHADRAKSEFLANMSHEIRTPMNGIIGMADLL-AEAELTADDQQNVETIRSSAQ 654
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD S++EAGK + EDF++ + + DLF P A+ KG+ + + ++G
Sbjct: 655 ALLKIINDILDLSRLEAGKFAISREDFNLRDCIGGAADLFRPKALEKGLSMQVSYANGLP 714
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ GD +L+QIL NL+ NAVKFT +G I+VR
Sbjct: 715 ---DRLHGDDGRLRQILVNLIGNAVKFTPDGKIAVR------------------------ 747
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+Q E+ EV+D+G GI + + K +F+ + Q
Sbjct: 748 -------------------VSQAGEDPCRLVVEVEDSGIGISETQAKHIFDRFTQADAAT 788
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL I L + MGG I + + +G+CFR +
Sbjct: 789 TKAFGGTGLGLTISSMLAKRMGGGITVQSQPG--KGSCFRLEL 829
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+A+D+ R + LR ++ NG AA+++ R L D I
Sbjct: 856 RVLLAEDNQTNRLLVRKFLRGQPVDLQEAGNGRAAVEMCRE-------------LEPDVI 902
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD MP ++G AT++IR R V I+ALTA+ + ++AGM+ L KP+
Sbjct: 903 LMDMSMPELDGISATQEIRSLPIRQPV---IVALTANAFSSDRQACLDAGMNRFLAKPVK 959
Query: 1120 RDHLMEAI 1127
+ L+ +
Sbjct: 960 KAVLLHTL 967
>gi|407699787|ref|YP_006824574.1| sensor protein [Alteromonas macleodii str. 'Black Sea 11']
gi|407248934|gb|AFT78119.1| putative sensor protein [Alteromonas macleodii str. 'Black Sea 11']
Length = 1239
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 147/295 (49%), Gaps = 55/295 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE-LETNLRQMNVC 415
+EATQ+A + S KS +N SH++R L G+ G L ++ P +E E + M +
Sbjct: 501 VEATQEARKASRVKSSFISNISHEMRTPLNGVMG--SLALLKRQPLNEKAEQLVSMMEIS 558
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
N+L L+N +LD SK+EAGK+++ + FD L+E + +F A KG+++++D +
Sbjct: 559 CNNLSVLINDVLDLSKIEAGKLEINNQYFDPLALIESIAKVFAVKAAAKGLQLLIDTTG- 617
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
L ++ D ++ QI+SNLL+NA+KFT +GHI ++ +
Sbjct: 618 --LPPVEINSDPHRINQIISNLLNNAIKFTEKGHIKLQVSI------------------- 656
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
GD+ DE E F V DTG GI KE + +F + Q
Sbjct: 657 --------------GDV--------DEGTQELHFSVSDTGVGIAKENQPKLFTAFTQADS 694
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
V GGTGLGL I + L +LMGGDI N E G F+ F+ + E +++
Sbjct: 695 SVATQYGGTGLGLSICKQLSQLMGGDITF----NSEIGVGSTFSFFITLPETTSD 745
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 14/147 (9%)
Query: 984 EEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLN 1043
E+D E+ Q + +L+ DD+M+ R VA+ L L + C +GE + + +
Sbjct: 909 EDDTEQ---QFSIENANLLIVDDNMINREVAKGVLEGLPVNLFTCSDGEEVIAFLAKCES 965
Query: 1044 DQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH--IPIIALTAHISGEE 1101
R + + ILMDC+MP MNGY+AT+ IR E K +H +PIIA+TA+ E
Sbjct: 966 KGRRIHS--------ILMDCQMPNMNGYDATQAIR-EGKAGLLHKDVPIIAMTANAMLGE 1016
Query: 1102 ADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+K + AGMD KP+ + L+ +K
Sbjct: 1017 KEKCLAAGMDDFATKPVMAEVLIPKVK 1043
>gi|394989866|ref|ZP_10382699.1| hypothetical protein SCD_02292 [Sulfuricella denitrificans skB26]
gi|393791366|dbj|GAB72338.1| hypothetical protein SCD_02292 [Sulfuricella denitrificans skB26]
Length = 1650
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 148/320 (46%), Gaps = 57/320 (17%)
Query: 356 QMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
Q+EA Q AE + KS AN SH+IR + I GL +L ++ + L++ +
Sbjct: 1041 QIEARQAAEAANRAKSEFLANMSHEIRTPMNAILGLTQLV-LDTELTHHQQDFLKKTHAS 1099
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
A LLG+LN ILD SK+EAG M + + F + E LE V DLF K +E++L+ +
Sbjct: 1100 ARSLLGILNDILDFSKIEAGHMSIEQVPFHLQESLEQVADLFSARIEEKKLELILEIAPD 1159
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+++ GD ++L Q+L+NL+SNA+KFT G I ++
Sbjct: 1160 VP---AEILGDPLRLSQVLTNLVSNAIKFTERGEIHIK---------------------- 1194
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
V A+ + F V DTG G+ + + +F+ + Q
Sbjct: 1195 -------------------VEVAEHTPATQQLRFSVRDTGIGLSSGQAERLFQAFTQADS 1235
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
GGTGLGL I + LV LMGG+I + E +G+ F F I+ A +NT
Sbjct: 1236 STTRKYGGTGLGLAICKQLVELMGGEISVSSVEG--QGSAFIFT----IQAGVAPSHNTV 1289
Query: 652 GEKELAG--GDSAAGDTQLQ 669
LAG D+ A LQ
Sbjct: 1290 QPLSLAGAPADTVASPQGLQ 1309
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 15/132 (11%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L+G ++L+ +D+ + R +A L G ++ E+G A++ V++
Sbjct: 1308 LQGVRVLLVEDNAINRLMAAEFLERRGVSLTLAEHGGEAVERVKTE-------------T 1354
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D +LMD MPIM+G EA R IRE + +PIIA+TA + E+ D+ GM +
Sbjct: 1355 FDAVLMDLHMPIMDGLEAARLIRELPQGKS--LPIIAMTAAVLQEDRDQCAAVGMVDFIA 1412
Query: 1116 KPLNRDHLMEAI 1127
KP++ + ++ +
Sbjct: 1413 KPIDPEDMIRVL 1424
>gi|374623145|ref|ZP_09695660.1| Hpt sensor hybrid histidine kinase [Ectothiorhodospira sp. PHS-1]
gi|373942261|gb|EHQ52806.1| Hpt sensor hybrid histidine kinase [Ectothiorhodospira sp. PHS-1]
Length = 787
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 142/304 (46%), Gaps = 62/304 (20%)
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
E + A + ++A + AE + K A SH+IR + G+ GL EL + L
Sbjct: 248 EEEVAARTFELLQAKEAAEAANRAKGEFLATMSHEIRTPMNGVLGLTELLL-----STPL 302
Query: 406 ETNLRQMNVCA----NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
+T R A LLG+++ ILD SK E+G+M L DFD+G L+ + V+LFH A
Sbjct: 303 DTRQRHYAETAIQASRQLLGIIDDILDFSKAESGQMHLESVDFDLGALVRECVNLFHESA 362
Query: 462 MRKGVEVVLD--PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
+KG+ + +D P D + +GD ++L+Q+L+NLLSNA+KFT +G + V CV+
Sbjct: 363 AKKGLTLSMDLSPKDQPLW----FQGDPLRLRQVLTNLLSNAIKFTHQGGVEV--CVQID 416
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
G A ++ DTG GI
Sbjct: 417 RIPG---------------------------------------QADSVRLQIKDTGIGIA 437
Query: 580 KEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
E R+ +FE + Q GGTGLGL I LV LMGG+I + +G+ F +
Sbjct: 438 PEAREKIFERFAQADGSTTRRYGGTGLGLAICIRLVELMGGNISM--NSTPGQGSTFIVH 495
Query: 636 VFLA 639
+ LA
Sbjct: 496 LSLA 499
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 26/163 (15%)
Query: 968 NSSGEGSSRYKQTEIEEEDG----ERSQAQKPLRGK---------KILVADDSMMLRRVA 1014
++ G+GS+ + DG E S ++P RG +L+A+D+ + + VA
Sbjct: 484 STPGQGSTFIVHLSLAAGDGHPPVEPSTGREPPRGDIHNAQTLNGHVLLAEDNSVNQLVA 543
Query: 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074
L LG + NG+ AL ++ + + D ILMDC MP+M+GY+AT
Sbjct: 544 GSMLEQLGLSYSIANNGQEALAMLDA-------------IKVDLILMDCRMPVMDGYQAT 590
Query: 1075 RKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
IR+ + ++PIIALTA+ E + + GM L KP
Sbjct: 591 TAIRQGKVPGCRNVPIIALTANALPRERHQCLAVGMQACLSKP 633
>gi|374999131|ref|YP_004974629.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357426556|emb|CBS89485.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 719
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 142/291 (48%), Gaps = 39/291 (13%)
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSI 426
S KS A SH++R + + G+ +L + G + ++ +R + A+ L+ +LN +
Sbjct: 192 SRAKSRFLAMMSHELRTPMTAVIGMGDLL-MGTGLSDQQKSFVRTLRSSADTLMTILNDV 250
Query: 427 LDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGD 486
LD SK+EAG++ L E DF + L++DVV LF A KG+ + +D + ++GD
Sbjct: 251 LDFSKIEAGQLMLEEIDFSLPRLVDDVVQLFLVRAAAKGLALSASIADDTP---RHIRGD 307
Query: 487 RVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNK 546
+L+Q+L NL+SNA+KFT G I + V P PS + G + L
Sbjct: 308 PTRLRQVLFNLVSNAIKFTERGAIEI--AVWSPDPPVTPSAGRAGEGGATAPVTL----- 360
Query: 547 KARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGL 602
FEV D+G G+ E+R +F+ +VQ GGTGL
Sbjct: 361 ---------------------RFEVQDSGIGMTAEQRGRLFDAFVQADASTSRKYGGTGL 399
Query: 603 GLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS-ANDNNTQG 652
GL I + LV MGG+I + RG+ FRF++ + EA D T+G
Sbjct: 400 GLAICKRLVEAMGGEITVASAPG--RGSTFRFSIRTRMAEAQPVGDLGTRG 448
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 990 SQAQKPLRGK---KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
+QA++P + ++L+A+D+ + R + + +G ++A +G A L +++
Sbjct: 452 TQAEEPQQSPVALRLLLAEDNDINRMLIIAMMTRIGHRIDAVNDGRAVLDAIKA------ 505
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI 1106
YD +++D EMP+++G R IR + IPI+ L+A E D +
Sbjct: 506 -------TDYDVLILDMEMPVLDGRSTARAIRRMDG-AVARIPIVGLSADALPEHRDGHM 557
Query: 1107 EAGMDVHLGKPLNRDHL 1123
AG+D +L KP++ + L
Sbjct: 558 AAGLDAYLTKPIDWEQL 574
>gi|167571892|ref|ZP_02364766.1| two-component system sensor protein [Burkholderia oklahomensis
C6786]
Length = 925
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 137/274 (50%), Gaps = 51/274 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LR 410
S +K EA A++ + KS A SH+IR L I G +EL + P S ++ L+
Sbjct: 426 SELKLEEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLEL--LRRSPLSMRQSERLQ 483
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C+N LL ++N ILD SKVE+G+M L FD+ LL+D+VD + P+A KG+E+
Sbjct: 484 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQDIVDAYAPLAESKGLELFS 543
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G +S GD ++ QILSNL+ NA+KFT GHIS+
Sbjct: 544 SVGEGIANYYS---GDPARIHQILSNLIGNAIKFTDSGHISID----------------- 583
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
++ K G+ +A+E V DTG GI ++ T+F+ Y
Sbjct: 584 -----------VHRAKTGPGN-----------SAIEIW--VSDTGIGIQPDRIATLFDVY 619
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
Q + GG+GLGL + Q L +MGG IEI
Sbjct: 620 TQADASIHRRFGGSGLGLPLCQRLATIMGGSIEI 653
Score = 42.0 bits (97), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 23/131 (17%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D R + L L V+ ENG AL+ ++ + YD +L
Sbjct: 699 VLVAEDHPANRALLRDQLEALDHRVDVVENGRDALR----AFSEHQ---------YDAVL 745
Query: 1061 MDCEMPIMNGY---EATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
D MP ++G+ K+R + +PIIA+TAH + E+ ++ + G+ + KP
Sbjct: 746 TDLGMPELDGFGFAMFANKMRAD-------VPIIAMTAHATAEDYQRSKKVGIAEIVLKP 798
Query: 1118 LNRDHLMEAIK 1128
L+ + L + ++
Sbjct: 799 LSLNTLDKVLQ 809
>gi|153832261|ref|ZP_01984928.1| sensory box sensor histidine kinase/response regulator [Vibrio
harveyi HY01]
gi|148871572|gb|EDL70427.1| sensory box sensor histidine kinase/response regulator [Vibrio
harveyi HY01]
Length = 867
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 144/287 (50%), Gaps = 54/287 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+ +++ R + KS AN SH+IR + I G E+ +E+ +E + L ++ A
Sbjct: 363 DEVKKSARATKAKSEFLANMSHEIRTPMNAIMGFSEIL-LESEKRNEQRSLLHLLHKSAG 421
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDGS 476
+L+ L+N ILD SKVEAGK+ LIEE FD+ EL+E L A +K +++++D P D
Sbjct: 422 NLITLINDILDYSKVEAGKLTLIEEPFDLRELVESSTALCAYQANKKDLKLLVDMPLD-- 479
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GDR ++ QIL NL+ NAVKFT EGHI ++ K
Sbjct: 480 --IHAHVIGDRGRINQILLNLIGNAVKFTEEGHILIKITEK------------------- 518
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+ +G++ + F+V DTG GIP+E+ + + + QV
Sbjct: 519 ---------RTPQGNV--------------YCFDVIDTGIGIPEERLPHIMDKFEQVDNS 555
Query: 597 ----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GTGLGL I + LV++ GGD+ + G+CF F++ L
Sbjct: 556 ITRKYEGTGLGLAISKRLVQMYGGDLSVTSTLGS--GSCFSFSLKLC 600
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 14/143 (9%)
Query: 986 DGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQ 1045
+ +S+ QK LRG K+LVA+DS + R + L G + E+G A++ +
Sbjct: 733 NANQSKPQKDLRGVKLLVAEDSSVNRILISKMLSKTGIDLTIAEDGVIAVEHYQK----- 787
Query: 1046 RDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADK 1104
L D ++ D MP +G+ T IR ++ ++ PIIA +AH EE +
Sbjct: 788 --------LKPDMVITDISMPNKDGFSVTEDIRNLQQSQDYPWCPIIAFSAHALEEEQGR 839
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAI 1127
+ E GM+ +L KP+ + L+ I
Sbjct: 840 STEVGMNDYLTKPVQKTDLLNMI 862
>gi|149189915|ref|ZP_01868194.1| sensory box histidine kinase/response regulator [Vibrio shilonii
AK1]
gi|148836230|gb|EDL53188.1| sensory box histidine kinase/response regulator [Vibrio shilonii
AK1]
Length = 1202
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 156/310 (50%), Gaps = 55/310 (17%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R +++E+H+ ++ E+ Q + S KS AN SH+IR + I G+ L +E
Sbjct: 462 RKSQRELHIVTEELE--ESNIQTQNASQAKSDFLANMSHEIRTPMNAIIGMSHLA-LETK 518
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
++ + ++N A LLG++N ILD SK+EAGK+++ +F + +LE+V+ L
Sbjct: 519 LDNKQRHYISKVNSSAQALLGIINDILDFSKIEAGKVEIESINFSLDSVLEEVISLIDDS 578
Query: 461 AMRKGVEVVLD-PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
A +K + +++D SD ++ GD +++KQ+L+NL SNAVKFT G + V+
Sbjct: 579 AKQKKLSLIIDVASDVP----DQLIGDPLRIKQVLTNLTSNAVKFTETGEVRVK------ 628
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
V+ A E + F V DTG G+
Sbjct: 629 -----------------------------------VSTAMMRERECKINFAVKDTGIGMT 653
Query: 580 KEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
+E+ ++F+++ Q GGTGLGL I ++LV LMGG + V+ GE G F F+
Sbjct: 654 REQIDSLFQSFSQADSSTTRKYGGTGLGLSITKNLVELMGGKVS-VESRLGE-GARFSFS 711
Query: 636 VFLAIREASA 645
+ L + E++A
Sbjct: 712 LVLGVSESNA 721
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 83/140 (59%), Gaps = 15/140 (10%)
Query: 988 ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
E +A L+G K+L+ +D+ + + VA L+ G +V+ ENG+ A+ ++S +
Sbjct: 870 ELKRALASLQGAKVLLVEDNTINQEVARELLQSKGLSVDVVENGQEAVTSLQSEI----- 924
Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE 1107
YD +LMDC+MPIM+GYEATR IR+E V +P+IA+TA + ++ +K +
Sbjct: 925 --------YDGVLMDCQMPIMDGYEATRNIRKE--LGLVELPVIAMTASVMIDDKEKALA 974
Query: 1108 AGMDVHLGKPLNRDHLMEAI 1127
GM+ +GKP+ + + + +
Sbjct: 975 CGMNDVIGKPIILEEMFQVM 994
>gi|375149632|ref|YP_005012073.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
gi|361063678|gb|AEW02670.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
Length = 1329
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 146/297 (49%), Gaps = 55/297 (18%)
Query: 355 KQME-----ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
KQME A AE + KS AN SH++R + GI G +L S+ + L
Sbjct: 794 KQMEQELVQAKDMAESANQAKSEFMANMSHELRTPMNGIIGFTDLVLTTNLQHSQRDY-L 852
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
+ A LL ++N ILD SK+EAGK+Q+ F + EL+E+ +D+ A K +E+V
Sbjct: 853 ENVKKSAYGLLDIINDILDFSKLEAGKLQIDNTSFRIDELVEEAIDILSVKAFEKRLEMV 912
Query: 470 --LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
+DP L S+V GD V+++Q+ NLL NA+KFT +G I V +KK GN
Sbjct: 913 CHIDP-----LLPSRVSGDPVRIRQVFVNLLGNAIKFTQKGEIFV--SLKKA---GN--- 959
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
++ K+ K D++ V DTG GIPKEK +F
Sbjct: 960 -------------MYVKDGKKFIDID---------------LSVRDTGIGIPKEKLVKIF 991
Query: 588 ENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
+++ Q GGTGLGL I +SL LM G +++ + N RG+ F + L I
Sbjct: 992 DSFTQADSSTTRKYGGTGLGLTISKSLAELMDGSLQVESETN--RGSTFTLKLPLEI 1046
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 15/128 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
++V D+ + + + E+ L +G V NG+ AL+L++ Q+D P + I
Sbjct: 1211 MVVEDEPINMLLITEV-LGKMGFAVIKATNGKQALELLQ-----QQD---PQL-----IF 1256
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD MP M+G+ TR IR+ + + IP+IALTA + +K IEAGM+ ++ KP
Sbjct: 1257 MDVNMPEMDGFSTTRLIRQLPQPYSL-IPVIALTADAMQGDKEKCIEAGMNDYISKPFKL 1315
Query: 1121 DHLMEAIK 1128
+ + +K
Sbjct: 1316 EEIESVLK 1323
>gi|333985401|ref|YP_004514611.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333809442|gb|AEG02112.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 1327
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 139/290 (47%), Gaps = 51/290 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q+AE+ + KS AN SH+IR + I GL+ELC + + S+ L ++ A
Sbjct: 723 LEAKQEAEKATQVKSEFLANMSHEIRTPMNAIVGLVELC-LNSDISSKQRDYLERVETAA 781
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+ L L++ ILD SK+E+GK++L F + E+L+ V + RK ++++ D
Sbjct: 782 HGLTNLIDDILDFSKMESGKLRLDAVPFVLEEMLDQVFSTMAELCRRKQLKLIRPSIDQD 841
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD +L+Q+L NL+ NA+KFT G I V
Sbjct: 842 ---YHAVMGDPQRLRQVLINLIGNAIKFTERGQIEV------------------------ 874
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+ QR + F + DTG G+ ++++ +F+ + Q
Sbjct: 875 -----------------SFTELQRTDKHTTLEFCITDTGIGMTEQQQTRLFKAFSQGDSS 917
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
V GGTGLGL I + L+ MGG I + +E ++G+CF F V L + +
Sbjct: 918 VTRTYGGTGLGLAISKQLIEQMGGAISVKSQE--QKGSCFSFTVTLGLTD 965
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 15/123 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+RG +IL+ +D+ + R VA L V+ ENGE AL ++
Sbjct: 986 IRGARILLVEDNEVNRIVAIELLTQAHLQVDTAENGEIALLKLKQT-------------Q 1032
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD +LMD +MP+M+GYE TR +R++ + ++P+IA+TA++ + DK +EAGMD +G
Sbjct: 1033 YDCVLMDVQMPVMDGYETTRCLRKQP--DCTNLPVIAMTANVMNVDRDKCLEAGMDDFIG 1090
Query: 1116 KPL 1118
KP+
Sbjct: 1091 KPI 1093
>gi|381161049|ref|ZP_09870280.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380877285|gb|EIC19378.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1604
Score = 126 bits (317), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 167/371 (45%), Gaps = 83/371 (22%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR----QMNVCANDLLGLLNS 425
KS AN SH+IR + + GL +L G+EL T R ++ A+ LLG+LN
Sbjct: 989 KSEFLANMSHEIRTPMNAVMGLAQLLL-----GTELSTRQRDYLTKLYNAAHSLLGILND 1043
Query: 426 ILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGSVLKFSKV 483
ILD SK+EAGK+ L D ++ ELLE +LF KG+E++ +DP +L
Sbjct: 1044 ILDYSKIEAGKLDLETVDVEMAELLESSANLFSLAVEDKGLELIVEIDPDIPPIL----- 1098
Query: 484 KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFY 543
GD ++L+QI++NLL NAVKFT +GHI++
Sbjct: 1099 LGDPLRLRQIMNNLLGNAVKFTPKGHITL------------------------------- 1127
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GG 599
++ +R + + V DTG G+ E+ +F + Q GG
Sbjct: 1128 ----------SMRLVERQGDEVTLKVSVQDTGIGMTSEQVGRLFRAFEQADASTTRRFGG 1177
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGG 659
TGLGL I + LV +MGG+I + + E+G+ F F V L + A N+ G L G
Sbjct: 1178 TGLGLTITKYLVDMMGGEISV--ESQPEQGSTFGFQVRLQVSPTPAK-NDAAG--HLPGT 1232
Query: 660 DSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQ 719
+ D Q ++ N+ S R G+ ++L+ N + +A
Sbjct: 1233 RTLIADDQKSARDVR-----------------NMRSRTHRIRGAQILLVEDNPTNQLVAC 1275
Query: 720 KFMENLGINVS 730
+E +G+ V+
Sbjct: 1276 DLLEKMGLVVT 1286
Score = 48.5 bits (114), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
RS+ + +RG +IL+ +D+ + VA L +G V NG A++ +
Sbjct: 1250 RSRTHR-IRGAQILLVEDNPTNQLVACDLLEKMGLVVTLANNGREAVEQAAARR------ 1302
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA 1108
+D ILMD +MP M+G EATR+IR + V I + A + EA ++ A
Sbjct: 1303 -------FDAILMDLQMPEMDGLEATRRIRALPQGPDVPIIAMTAAAMTADREASQS--A 1353
Query: 1109 GMDVHLGKPLNRDHLMEAI 1127
GM+ L KP++ L A+
Sbjct: 1354 GMNDFLAKPIDIAELTTAL 1372
>gi|374299638|ref|YP_005051277.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332552574|gb|EGJ49618.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 1143
Score = 126 bits (317), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 148/311 (47%), Gaps = 63/311 (20%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ----M 412
++A +QAE S KS AN SH+IR ++GI G+ ++ + LE Q +
Sbjct: 621 LQAKEQAEAASRAKSEFLANMSHEIRTPISGILGMADVLLT-----TRLEDRQAQYIALL 675
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV--EVVL 470
AN LL ++N ILD SK+EA K++L E F++ L VVD F ++KG+ EV L
Sbjct: 676 KDSANALLIIINDILDLSKIEARKLKLEPELFNLDAALRAVVDPFVLQTVKKGLGLEVHL 735
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
DP K+ GD ++L QIL+NLLSNA+KFTS G +++R + S
Sbjct: 736 DPG-----LPPKLHGDPIRLGQILTNLLSNALKFTSRGGVTLRVVPVQVSG--------- 781
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+ C E FEV DTG GIP +K+ +F ++
Sbjct: 782 -------VDC-------------------------ELRFEVQDTGLGIPSDKQDRLFRSF 809
Query: 591 VQVKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
Q+ GTGLGL I ++ V +MGG I + E +G+ F F + + A
Sbjct: 810 SQLDSSYAKQYCGTGLGLAISKNFVEMMGGRIWVESIEG--QGSLFAFTAKFGLPDGGAQ 867
Query: 647 DNNTQGEKELA 657
+ E+ LA
Sbjct: 868 AAENRREEALA 878
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR-NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
+D +LMD +MP M+G E TR+IRE + R IPIIA+TA+ + ++ + AGMD ++
Sbjct: 929 FDLVLMDVQMPEMDGLETTRRIREHDGRLFDPAIPIIAVTAYAMKGDQERFLAAGMDGYV 988
Query: 1115 GKPLN 1119
KP++
Sbjct: 989 SKPVD 993
>gi|221199414|ref|ZP_03572458.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
CGD2M]
gi|221205683|ref|ZP_03578698.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
CGD2]
gi|221174521|gb|EEE06953.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
CGD2]
gi|221180699|gb|EEE13102.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
CGD2M]
Length = 991
Score = 126 bits (317), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 47/288 (16%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQMNVCANDLLGLLNSILD 428
KS+ A SH+IR L + G +EL ++ GP ++ + L + + LL +LN +LD
Sbjct: 504 KSVFLATMSHEIRTPLNAVIGNLEL--MKRGPLADAQRRRLHAADTSSTALLHILNDVLD 561
Query: 429 TSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVK-GDR 487
SKVEAG++++ FD LL+DV + F P+A RKG+ V+ D + L+ S + GD
Sbjct: 562 LSKVEAGQLRIDAVPFDCAALLDDVTESFRPLAERKGLSVICDVA----LEPSPYRIGDP 617
Query: 488 VKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKK 547
++++Q++SNLLSNA+KFT GH+ V A ++S + HG
Sbjct: 618 IRIRQVVSNLLSNAIKFTDAGHVRVAA----------HAVSDAAHG-------------- 653
Query: 548 ARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLG 603
+ D A V DTG GIP+ + +F Y Q + GGTGLG
Sbjct: 654 ---------TGRTDGGAPVVEIVVADTGIGIPEAAQAAIFGLYRQADDSIHRRYGGTGLG 704
Query: 604 LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
L + + L+ M GDI + G+ FR + L + + D + +
Sbjct: 705 LALCRRLLDAMNGDIAVSSAPGA--GSTFRVRIPLPVCDDERGDASAE 750
Score = 44.3 bits (103), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 27/174 (15%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLR----------GKKILVADDSMMLRRV 1013
+ ++ G GS+ + + D ER A + G +LV +D R +
Sbjct: 719 IAVSSAPGAGSTFRVRIPLPVCDDERGDASAEVSDVSHVAIAGTGLSVLVVEDHPASRLL 778
Query: 1014 AEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073
LR L E G AL V +D +L D +P M+G+
Sbjct: 779 LADQLRELDVDATLVECGADALAAVERA-------------RFDIVLTDLGLPDMDGWSL 825
Query: 1074 TRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++R ++ + +IA+TAH+ ++ + +AG+ L KPL L A+
Sbjct: 826 ASELRARDR----AVRLIAMTAHVGSDDERRCADAGIHALLRKPLTLRKLSHAL 875
>gi|393768134|ref|ZP_10356676.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
gi|392726527|gb|EIZ83850.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
Length = 678
Score = 126 bits (317), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 147/313 (46%), Gaps = 65/313 (20%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
RA R +L + A ++AE S+ KS A SH++R L GI G+ +L G
Sbjct: 146 RAGRDVTARVEALRSRDAALERAEAASVAKSRFLATVSHEMRTPLNGILGMADLVL---G 202
Query: 401 PGSELE--TNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFH 458
+LE T + + LLGL++ +LD S++EAG++ L E FD+ L E VV+L
Sbjct: 203 TNLDLEQRTYVEAVRTSGQALLGLIDGVLDFSRIEAGRLDLAAEPFDLPALAESVVELLA 262
Query: 459 PVAMRKGVEVVLDPSDGSVLKFSK-VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVK 517
P A KG+E+ LD ++ F + + GD +++QIL NL NA+KFT G + V
Sbjct: 263 PRAQDKGIEIALDVTE----SFPRGLVGDADRVRQILINLAGNAIKFTERGGVGV----- 313
Query: 518 KPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKG 577
S F + G E T V DTG G
Sbjct: 314 ---------------------SLGFTPIQDGGG---------------EVTLAVSDTGSG 337
Query: 578 IPKEKRKTVFENYVQVKEGEG-------GTGLGLGIVQSLVRLMGGDIEIVDKENGERGT 630
IP+++ +FE + Q G+G GTGLGL I + LV MGG IE D G RG+
Sbjct: 338 IPEDRLPILFEEFEQ---GDGSASRSHEGTGLGLAITRRLVTRMGGRIE-ADSRVG-RGS 392
Query: 631 CFRFNVFLAIREA 643
FR V L + EA
Sbjct: 393 TFR--VVLPLPEA 403
>gi|110834488|ref|YP_693347.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2]
gi|110647599|emb|CAL17075.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2]
Length = 930
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 142/286 (49%), Gaps = 59/286 (20%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++A + S KS AN SH+IR L GI G +L + + + E L ++ A
Sbjct: 280 ARKEALKASHIKSEFLANMSHEIRTPLNGIIGFTKLLH-RSPLSARQEEYLSTIHKSAES 338
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N +LD SK+EAGK+ L ++ +L+EDV L P+A +G+E S++
Sbjct: 339 LLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLE------QASII 392
Query: 479 KFSKVK----GDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
+S V GD ++++Q+L+NLLSNA+KFT G + VRA +
Sbjct: 393 -YSDVPVALLGDPLRIRQVLTNLLSNAIKFTDHGSVVVRAML------------------ 433
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
++ RG EA+ V DTG G+ +E +K +F + Q
Sbjct: 434 -----------EEDRG-AEAI-----------IKITVTDTGHGLSQENQKNLFRAFTQTD 470
Query: 595 EG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ EGGTGLGL I + LV MGG+I I E ERG+ F F +
Sbjct: 471 QSARRQEGGTGLGLAISKRLVESMGGEIGIESCE--ERGSTFWFTL 514
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 17/140 (12%)
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
RSQ +P+ +L+ DD ++A + L LG TV AC++G++AL D
Sbjct: 664 RSQFPQPI---SVLLVDDHPGNLKLARVFLEELGVTVTACDSGQSAL-----------DT 709
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA 1108
H P+D + MD +MP M+G E ++++R E + H PI+ALTAH E + +++
Sbjct: 710 FQKH--PFDLVFMDIQMPGMDGKETSKRMRAAEP-DGTHTPIVALTAHALDSERRELLDS 766
Query: 1109 GMDVHLGKPLNRDHLMEAIK 1128
G+D +L KP+ + L ++
Sbjct: 767 GLDDYLSKPITEEQLRHTLQ 786
>gi|428320948|ref|YP_007118830.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428244628|gb|AFZ10414.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 955
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 150/294 (51%), Gaps = 26/294 (8%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE + KS AN SH++R+ L I G +L E + N+ +
Sbjct: 433 AKDKAEVANQAKSTFLANMSHELRSPLNAILGFSQLMTRSQTLSPEHQENISIIRSSGEH 492
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N++LD SK+E+G+ L D+ LL D+ D+F A K +++V D S V
Sbjct: 493 LLTLINNVLDLSKIESGRTTLNPHKIDLYRLLNDLEDMFQLKAHDKQLQLVFDRS-PDVP 551
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVK-------------KPSAIGNP 525
++ ++ D +KL+QIL NLL+N++KFT EG ++VR + +PS +
Sbjct: 552 QY--IETDELKLRQILINLLNNSLKFTHEGGVAVRVSKQSLGRNQQPEGGNFEPSEVPKS 609
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
+ +S+ + S C A + +A + + + FEV+DTG GI +
Sbjct: 610 TENSAINDIKISQICQSNNQIIATPNDDAASTS-----SFFLHFEVEDTGPGIATNELDD 664
Query: 586 VFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+FE +VQ K G + GTGLGL I + V LMGG++ + +GT F+F++
Sbjct: 665 IFEPFVQTKTGKDSQEGTGLGLPISRQFVELMGGEMSVCSAVG--KGTNFKFDI 716
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 918 EIQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGP------RRDIMPNASVLLKTGNSSG 971
E+++ G + + DI V KTG S EG R + + ++ G
Sbjct: 649 EVEDTGPGIATNELDDIF-EPFVQTKTGKDSQEGTGLGLPISRQFVELMGGEMSVCSAVG 707
Query: 972 EGSSRYKQTEIEEEDGERSQAQKPLRG----------KKILVADDSMMLRRVAEINLRHL 1021
+G++ ++ D ++ KP R +IL+ DD + R++ L L
Sbjct: 708 KGTNFKFDIQVIAVDAADIESLKPSRNVIALVPNQHTYRILIVDDKQLNRQLLIKILSPL 767
Query: 1022 GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEE 1081
G ++ NG+ A+++ D PH+ I MD MP+M+GYEAT+ I+
Sbjct: 768 GFELKEATNGQEAIEI--------WDSWEPHL-----IWMDMRMPVMDGYEATQYIKRTI 814
Query: 1082 KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
K IIALTA + EE + AG D L KP + +A+
Sbjct: 815 KGQAT--AIIALTASVLEEERAVILSAGCDAFLRKPFREADIFDAM 858
>gi|387126714|ref|YP_006295319.1| regulator of pathogenicity factors [Methylophaga sp. JAM1]
gi|386273776|gb|AFI83674.1| regulator of pathogenicity factors [Methylophaga sp. JAM1]
Length = 858
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 148/292 (50%), Gaps = 54/292 (18%)
Query: 351 ASLIKQME-ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
A LIK++ A +++ + KS AN SH++R L G+ G+ +L E + +
Sbjct: 191 AFLIKKLHVAIALSKQANEAKSRFLANMSHELRTPLNGVIGIADLM-AETQLNKQQHDFV 249
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV- 468
+ M A+ LL L+ ++LD SK+EAGK+ + ++ FD+ +LL V+ + P+A+ KG+ +
Sbjct: 250 KIMKTSAHTLLSLIENVLDISKIEAGKILISDKKFDLHQLLNSVIGMQKPMAISKGLHIN 309
Query: 469 -VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
+DP+ L FS + GD L+Q+L NL+ N++KFT +G + + A
Sbjct: 310 CYIDPA----LPFS-INGDLQHLRQVLINLIGNSIKFTDQGAVKLSA------------- 351
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
Q I + + FE+ DTG GIP+E + +F
Sbjct: 352 --------QPIQ-------------------HKSNQNLWIRFEISDTGIGIPQEALQRIF 384
Query: 588 ENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+++ Q+ +GGTGLG I + LV LMGG+I V E GE GT F F +
Sbjct: 385 DDFTQISPDTLNKGGTGLGTTIAKELVELMGGEIG-VTSEVGE-GTLFWFEM 434
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 13/144 (9%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
+ AQ + IL+A+D+++ ++V E LRH G V +GE AL
Sbjct: 584 AQHYAAQSYAKSLNILIAEDNLVNQQVLEGILRHAGHQVILASSGEQAL----------- 632
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI 1106
D+ + I + +++D MP +G E R +R + + IPII LTA + + + +
Sbjct: 633 DVLSQQIDSIEMLILDMNMPDYSGTEVIRAMRYMDTGHD--IPIIILTADATPQAKQRCL 690
Query: 1107 EAGMDVHLGKPLNRDHLMEAIKYL 1130
EAG + L KP++ L+E++ L
Sbjct: 691 EAGANEFLTKPIDSRSLLESVARL 714
>gi|311279881|ref|YP_003942112.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
gi|308749076|gb|ADO48828.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
Length = 900
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 141/283 (49%), Gaps = 53/283 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + A+ + KS AN SH+IR + GI G+ +LC +E ++ + + A+
Sbjct: 259 QAVEAAKAANQAKSEFLANMSHEIRTPMNGILGMTQLC-LETDLTADQRDYINMAHSSAS 317
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK+EAGK+ L EDF + L++++ P K +E+++D
Sbjct: 318 ALLNIINEILDFSKIEAGKLTLNAEDFAIRPLIQEITRPLMPKFSEKNIELLVDIHPDVA 377
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ ++ GD ++L+Q+L+NL+ NA+KFT G + +R + P A+ H L
Sbjct: 378 I---EIHGDPLRLRQVLTNLIGNALKFTLHGEVVLR-ILPVPDAL---------HRLL-- 422
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
F + D+G GIP++K+K +FE++ Q
Sbjct: 423 -------------------------------FSLHDSGIGIPEDKQKVIFESFSQADNST 451
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL I LV MGG++ + + +G+CF F++
Sbjct: 452 TRKYGGTGLGLTISSRLVEKMGGELHLTSQVG--QGSCFSFSL 492
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 16/121 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+A+D+++ +++A + LG + + NG L+++ L + R YD IL
Sbjct: 661 LLIAEDNLINQKLALNFVGKLGHSADLAGNG---LEVIEK-LGNAR---------YDVIL 707
Query: 1061 MDCEMPIMNGYEATRKIREEEKR---NQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
MD +MP M+G E IR+ E+R PIIA+TAH + ++ ++ G D ++ KP
Sbjct: 708 MDLQMPEMDGVETVAAIRQAEERLPSGAPRQPIIAMTAHAMKGDRERFLQHGFDGYIAKP 767
Query: 1118 L 1118
+
Sbjct: 768 I 768
>gi|326798534|ref|YP_004316353.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium
sp. 21]
gi|326549298|gb|ADZ77683.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium
sp. 21]
Length = 1349
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 141/278 (50%), Gaps = 57/278 (20%)
Query: 353 LIKQMEATQQAERKSMN---KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
L + +E ++AE +++ KS AN SH++R L I L L E G+ LE +
Sbjct: 653 LERNLEIQKKAEDLALSTKYKSEFLANMSHELRTPLNSILLLSRLL-SENNEGNLLEDQI 711
Query: 410 RQMNVC---ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV 466
V N LL L++ ILD SK+EAGKM L ED + E++ D+ +LF P+A+ KG+
Sbjct: 712 EYAKVIQTSGNGLLTLIDEILDLSKIEAGKMTLSYEDVSLAEMINDLQNLFGPMAVDKGL 771
Query: 467 EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPS 526
E+ D + FSK++ D ++L+QIL NL+SNA+KFT++G
Sbjct: 772 ELKFDCDKTT---FSKIQTDNLRLQQILRNLISNALKFTAKG------------------ 810
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTV 586
S++ Y NK+ G L F V DTG GIPKEK + V
Sbjct: 811 ----------SVTLSVYPNKEKEGYL---------------NFAVRDTGIGIPKEKHQLV 845
Query: 587 FENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
FE + Q + GGTGLGL I + L +L+GG + I
Sbjct: 846 FEAFQQADGSTRRKFGGTGLGLSISKELAKLLGGSLYI 883
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 49/227 (21%)
Query: 907 TGKSRSKAGRHEIQEEGSS---SSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVL 963
TGK S + +I++ S + HS I+ ++ L S + P+++ + S L
Sbjct: 1162 TGKQLSPSEEIKIKQYADSIVVKTAHSYERILDEVALFLHLVEESNDTPKKEKLKLNSTL 1221
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEIN--LRHL 1021
TE+ L K +L+ADD +R + + L
Sbjct: 1222 ----------------TEV-------------LNNKTVLIADDD--IRNIFSLTKALERY 1250
Query: 1022 GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEE 1081
V A ENG+ ALQ + + H D +LMD MP M+GYE T +IR+E
Sbjct: 1251 KINVLAAENGKEALQTLHA-----------HADKVDIVLMDMMMPEMDGYETTTRIRQES 1299
Query: 1082 KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ ++PI+A+TA + +K I AG ++ KP++ D L+ ++
Sbjct: 1300 RFK--NLPILAVTAKAMMGDREKCIAAGASDYISKPIDIDQLISLLR 1344
>gi|110833833|ref|YP_692692.1| phosphotransferase-histidine kinase family protein [Alcanivorax
borkumensis SK2]
gi|110646944|emb|CAL16420.1| phosphotransferase-histidinkinase, family protein [Alcanivorax
borkumensis SK2]
Length = 867
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 139/286 (48%), Gaps = 61/286 (21%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
A +S KSL A SH+IR L G+ GL EL E P + + ++ L L
Sbjct: 363 ARAESQAKSLFLARMSHEIRTPLNGVIGLAELLR-ETDPSPRQQEYISLIDSAGRTLTAL 421
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-----PSDGSV 477
+N +LD +K+EAGK++L+EE FD+ LL + V +F+ A G V+LD PSD
Sbjct: 422 INDVLDFAKIEAGKLELVEEHFDLPVLLAECVQMFNLPASDNGTLVILDVDPQTPSD--- 478
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
V GD ++L+QIL NL+ NAVKFT G + + S
Sbjct: 479 -----VVGDAIRLRQILINLVGNAVKFTRNGRVVL------------------------S 509
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK--- 594
+ C ++ G+ A +TF V DTG G+ + ++ +F+ + Q
Sbjct: 510 LVC-----RRQYGE------------APLYTFSVADTGIGLSQVEQAQLFQRFTQASANT 552
Query: 595 -EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
+ GGTGLGL I + LV LMGG+I + +G+ F F++ +A
Sbjct: 553 AQRYGGTGLGLSISRELVELMGGEIHVHSAPG--QGSRFSFSIQMA 596
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
++L+ +D+ + + VA+ L+ LG + E+G+ L D D
Sbjct: 741 RVLIVEDNPVNQMVAKGYLQRLGVVHIIVAEDGQQGL-----------DAFGAQSGNLDL 789
Query: 1059 ILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+LMD +MP+M+G+ R IR+ E +R I+AL+AH E + + +GMD L KP
Sbjct: 790 VLMDLDMPVMDGFACARHIRDLEAERGWNPCQILALSAHAISEHSGRMSRSGMDGQLIKP 849
Query: 1118 LNRDHLMEAI-KYL 1130
L+ + +A+ KYL
Sbjct: 850 LSLAAMKQALFKYL 863
>gi|372488890|ref|YP_005028455.1| signal transduction histidine kinase [Dechlorosoma suillum PS]
gi|359355443|gb|AEV26614.1| signal transduction histidine kinase [Dechlorosoma suillum PS]
Length = 490
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 142/296 (47%), Gaps = 51/296 (17%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
SL + +A AE+ S KS AN SH++R + G+ G+ ++ E E +
Sbjct: 242 SLQRLQDALASAEQASRAKSEFVANMSHELRTPMNGVLGMAQVLR-ETPLDEEQREYVEV 300
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
+N LL ++N ILD SK+EAG++ L DFD+G+ L V++LF P K +E+ L
Sbjct: 301 INSSGESLLAIINDILDLSKIEAGRLDLESRDFDLGQQLAQVMELFAPQVRSKRLEMHLH 360
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
L K++GD +L+QIL NL++NAVKFT+ G I +LS R
Sbjct: 361 VEPDVPL---KLRGDPGRLRQILVNLVANAVKFTARGEI---------------TLSVWR 402
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
G + N + F V DTG GIP EK +F +
Sbjct: 403 EG-------------------------ESGGNVI-LRFAVSDTGIGIPAEKIPQLFAPFT 436
Query: 592 QV----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
QV GGTGLGL I + LV +MGG I I + + G+ G F F V LA EA
Sbjct: 437 QVDGSIARKFGGTGLGLSISKHLVEMMGGCIGI-NSQAGQ-GATFWFTVVLARGEA 490
>gi|434397981|ref|YP_007131985.1| PAS/PAC sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
gi|428269078|gb|AFZ35019.1| PAS/PAC sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
Length = 627
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 142/286 (49%), Gaps = 34/286 (11%)
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPG--SELETNLRQMNVCANDLLGLLNSILDTSK 431
AN SH++R L GI GL EL ++A ++ +L Q+ LL L+ +ILD SK
Sbjct: 367 LANMSHELRTPLNGILGLSELLKIDAEECGYTDFIPDLHQIQKSGMHLLTLIENILDLSK 426
Query: 432 VEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLK 491
+EAGK + E FD+ LL +V L PV + + D + FS DR ++K
Sbjct: 427 IEAGKGSIYSESFDLAALLTEVHALILPVVNNNNNVITMIFDDRLGMMFS----DRKRVK 482
Query: 492 QILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGD 551
QIL N+LSNA KFT +G I++ C K ++ PS+ N KA G
Sbjct: 483 QILLNILSNAAKFTHQGTITLSVCRKTRMSL--PSVV----------------NFKASGF 524
Query: 552 LEAVNAAQRDENAM---EFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGL 604
+N+ D++ F++ DTG G+ E+ K VF+ + Q + GGTGLGL
Sbjct: 525 ESELNSNLEDQSFQISDWIIFKISDTGIGMSAEQMKKVFQPFSQADDSTTKKYGGTGLGL 584
Query: 605 GIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
I +S +MGG+I + + +RG+ F AI E S NNT
Sbjct: 585 AICKSFCEMMGGNITV--ESQVDRGSTVTF-WLPAIAEKSPITNNT 627
>gi|84687780|ref|ZP_01015651.1| sensor histidine kinase/response regulator [Maritimibacter
alkaliphilus HTCC2654]
gi|84664216|gb|EAQ10709.1| sensor histidine kinase/response regulator [Rhodobacterales
bacterium HTCC2654]
Length = 600
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 51/283 (18%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH+IR + G+ G+ +L E E+ + + + LL ++N +LD
Sbjct: 209 KSAFLANMSHEIRTPMNGVVGMADL-MAEHDLDEEMASYVDTIRSSGRALLTIINDVLDY 267
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EA K++L E FD+ + + DV+ L P KG++++L D + ++ +GD V+
Sbjct: 268 SKIEAAKLELHLEPFDLEQTILDVIALVMPSIREKGLKIML---DVDMFLPTRYEGDPVR 324
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
++QIL+NL+ NAVKFT++GHI VR IG P +R
Sbjct: 325 VRQILTNLIGNAVKFTAKGHILVR-------VIGMPDGGDAR------------------ 359
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG----GTGLGLG 605
QR V+DTG GIP++ + VF + QV++ GTGLGL
Sbjct: 360 ---------QR------VHVTVEDTGIGIPRDMQDHVFGEFNQVEDERNRSFEGTGLGLA 404
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL-AIREASAND 647
I + LV LM G++ V+ E G G+CF F + L + EAS D
Sbjct: 405 ITRQLVSLMLGEV-WVESEEG-IGSCFGFALSLPVVAEASLPD 445
>gi|430375892|ref|ZP_19430295.1| multi-sensor hybrid histidine kinase [Moraxella macacae 0408225]
gi|429541123|gb|ELA09151.1| multi-sensor hybrid histidine kinase [Moraxella macacae 0408225]
Length = 1118
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 137/295 (46%), Gaps = 52/295 (17%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R A EM + I+ A A S KS AN SH++R L I G I L G
Sbjct: 347 RLAFDEMEMQNISIR--NARDAAVSASQTKSAFLANISHELRTPLNSIDGFINLLSRHGG 404
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
E + ++ + + LL L+N +LD SK+EAGK+ L + D+ + DVVD+ PV
Sbjct: 405 LTHEQDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLILDNHELDLYATIYDVVDMLSPV 464
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
A KG+ + + D V ++ + GD +++KQ+L+NL++NA+KFT EG + VR
Sbjct: 465 AAEKGLRLAVFFYD-DVPRY--LLGDALRIKQVLTNLVNNAIKFTDEGEVVVR------- 514
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
V +NA+ + V DTG+GI
Sbjct: 515 ----------------------------------VGLDDNQDNALNIS--VKDTGRGIDP 538
Query: 581 EKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTC 631
E +K +F+++ Q + GGTGLGL I + L LMGGDI D G C
Sbjct: 539 EHQKLLFQSFSQGDPSITRQYGGTGLGLVISKQLSYLMGGDIGFFDNACNFDGAC 593
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 85/154 (55%), Gaps = 10/154 (6%)
Query: 985 EDGERSQAQKPL---RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSG 1041
+D RSQ + L +G +L DD + V E L LG V +G A++ +R+
Sbjct: 774 DDNPRSQVEPNLPQWQGVCVLAVDDHLPNLLVLEALLNELGVAVVTANSGFEAVEYMRNS 833
Query: 1042 LNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE------EEKRNQVHIPIIALTA 1095
L D + + D I MD +MP M+G +A+ +IR E++ +Q H+PIIALTA
Sbjct: 834 LQ-LSDTKSSNWQKIDLIFMDIQMPKMSGKQASLQIRHLEKLANEQQHHQSHLPIIALTA 892
Query: 1096 HISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
H +E K + AG+D ++GKP+N+ L++ +++
Sbjct: 893 HSLSDERAKLLAAGIDDYVGKPINQMQLIQLLQH 926
>gi|218532769|ref|YP_002423585.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
gi|218525072|gb|ACK85657.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
Length = 700
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 136/289 (47%), Gaps = 50/289 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +AE ++ KS A SH++R L GI G+ +L ++ E T +
Sbjct: 166 EAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLL-LDTRLDPEQRTYVEAFRTSGK 224
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLGL++ ILD S++EAG++ L E FDV L+E VV+L P A KG+E+ LD +D
Sbjct: 225 ALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADD-- 282
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L +V GD +++QIL NL NA+KFT G + V S +R G
Sbjct: 283 LAALRV-GDADRVRQILVNLAGNAIKFTQTGGVGV---------------SLARSG---- 322
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+E V+DTG GIP+E+ +FE + Q +
Sbjct: 323 -----------------------EEQGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSA 359
Query: 598 G--GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GTGLGL I + LV M G IE + RG+ FR + L E +
Sbjct: 360 SHEGTGLGLAITRRLVERMNGTIEA--RSTMGRGSTFRVMLPLPAAEGA 406
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G+++L+A+D+ + +A L LGA V +G AL A P+D
Sbjct: 574 GRRVLLAEDNPINALLATKALERLGAQVIHARDGLEALA------------AAEGQGPFD 621
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDVHLGK 1116
L+D MP ++G E R+IR E + ++ALTA+ E+ D AG D L K
Sbjct: 622 LALIDIRMPGLDGLETARRIRAREAETGASPLHLVALTANTGREDVDAASAAGFDGFLPK 681
Query: 1117 PLN 1119
PLN
Sbjct: 682 PLN 684
>gi|346309220|ref|ZP_08851319.1| hypothetical protein HMPREF9457_03028 [Dorea formicigenerans
4_6_53AFAA]
gi|345900748|gb|EGX70566.1| hypothetical protein HMPREF9457_03028 [Dorea formicigenerans
4_6_53AFAA]
Length = 776
Score = 126 bits (316), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 145/289 (50%), Gaps = 48/289 (16%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + A S +KS AN SHDIR + ITG+ L +AG ++ R+++V A
Sbjct: 358 QAFEVASYASQSKSDFLANMSHDIRTPMNAITGITSLLEHDAGNEEKVREYARKIDVSAR 417
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLG++N +LD SK+EAGK DF + E ++++ +F P A K +++++ +
Sbjct: 418 HLLGIINDVLDMSKIEAGKTVFKYSDFSILEFMQEIQMMFRPQAEGKHQKMIMNHDN--- 474
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+K V GD+V L QI SNLLSNAVK+T EG ++ V++ S + +R+ FL
Sbjct: 475 IKHEWVNGDQVHLMQIFSNLLSNAVKYTQEGG-EIQFLVEEYET---KSRAYARYRFL-- 528
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
V D G G+ + + T+F+ + + +
Sbjct: 529 ---------------------------------VSDNGMGMSADFKDTIFDAFTRAESSL 555
Query: 598 G----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GTGLG+ I ++LV MGG I+ V+ E G+ G+CF + L I E
Sbjct: 556 TNKIQGTGLGMAITKNLVEAMGGTID-VESELGQ-GSCFEVLIDLKIAE 602
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 77/150 (51%), Gaps = 16/150 (10%)
Query: 979 QTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV 1038
Q E +E+DG L+G + L A+D+ + + L+ GA CENGE L+
Sbjct: 611 QEETDEQDG------NILQGMRFLCAEDNELNAEILTELLKIEGAKCTICENGEEILKAF 664
Query: 1039 RSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHIS 1098
+ P YD ILMD +MP+MNGYEAT+ IR IPIIA+TA+
Sbjct: 665 EQSV--------PG--DYDMILMDVQMPVMNGYEATKAIRRSSHELAKTIPIIAMTANAF 714
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
E+ ++ AGM+ H+ KP+ L + I+
Sbjct: 715 SEDIQHSLAAGMNAHVSKPVEMKVLEKTIR 744
>gi|254412478|ref|ZP_05026252.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180788|gb|EDX75778.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1082
Score = 126 bits (316), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 149/281 (53%), Gaps = 36/281 (12%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A AE+ + KS +N SH++R L I G +L ++ E ++ +
Sbjct: 594 AKDTAEQANRAKSQFLSNMSHELRTPLNAIIGFAQLLGRDSSLTQEHHDHIGIICRSGEH 653
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N++L SKVEAG+++L FD+ +L+ + ++F A KG+++V+D D ++
Sbjct: 654 LLSLINNVLQLSKVEAGQVKLNCYSFDLYGMLQVLEEMFKLQAENKGLQLVVD-YDEALP 712
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
++ V+ D KL+Q+L NL++NA+KFTS+G +++R A+ S+RH ++
Sbjct: 713 RY--VETDEGKLRQVLINLVNNAIKFTSQGGVTLRV-----KAVQGEMGESTRHPTFNTL 765
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG 598
+ FE++DTG GI E+ +++FE +VQ + G
Sbjct: 766 PI-----------------------PQKLRFEIEDTGLGIASEEIESLFEAFVQTEAGRK 802
Query: 599 ---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GTGLGL I Q VRLMGG+I + + N +G+ F F++
Sbjct: 803 SLEGTGLGLPISQQFVRLMGGEIHVSSRLN--QGSIFTFDI 841
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 15/130 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD + R + L +G +V NG+ A+ + S PH+ I
Sbjct: 871 RILVVDDRLESRLLLVKLLTTVGFSVREAVNGQDAIAIWTSW--------EPHL-----I 917
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+M+GYEAT+ I+ K Q + ++ALTA EE + AG D + KP
Sbjct: 918 WMDMRMPVMDGYEATKHIKGHLK-GQATV-VLALTASAFEEERSLVLSAGCDDFVRKPFR 975
Query: 1120 RDHLMEAIKY 1129
D + I +
Sbjct: 976 EDVIFNKIAH 985
>gi|406889705|gb|EKD35823.1| Hpt sensor hybrid histidine kinase, partial [uncultured bacterium]
Length = 735
Score = 126 bits (316), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 137/294 (46%), Gaps = 48/294 (16%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A AER ++ KS A+ SH+IR + I G +L P + L ++N +
Sbjct: 177 KAKAAAERSAITKSQFLAHMSHEIRTPMNAILGFSDLALQTDNPSDHFDY-LGKINTASY 235
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLG++N+ILD SK+EAGK+ + DFD+ ELLE + L G+E + + +
Sbjct: 236 SLLGIINAILDLSKIEAGKLTVENVDFDLRELLEKLATLISLRCEESGIEFYFNIAPETP 295
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++GD ++L Q+L+NL++NA KFT G+I + IG+
Sbjct: 296 F---ALRGDALRLSQVLTNLITNAFKFTESGYIVLHISPDPGRVIGS------------- 339
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
+ + F V DTG GI KE+ + +F+ + Q +
Sbjct: 340 -------------------------DRVILRFSVQDTGTGITKEQEENLFQPFTQADSSI 374
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
GGTGLGL I +SLV +M G I + + N G+ F F V A +E D
Sbjct: 375 TRKFGGTGLGLTICKSLVAIMNGSIWL--ERNDTPGSTFCFTVPFARKEGHDRD 426
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 19/149 (12%)
Query: 988 ERSQAQKP----LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV-RSGL 1042
+RS A P L G ++L+A+D+ + +++ L G +NG A++L+ R G
Sbjct: 572 KRSAAPLPSLDHLLGNRVLLAEDNKINQQITLGFLDFAGLATTIVQNGAEAVELLEREGT 631
Query: 1043 NDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEA 1102
+ +D +LMD +MP+M+GY AT IR+ IPIIALTAH EE
Sbjct: 632 S------------FDLVLMDIQMPVMDGYSATEAIRKMAAPTG-KIPIIALTAHAMQEEK 678
Query: 1103 DKTIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
K ++ GM+ ++ KP+N + L + +YL
Sbjct: 679 QKCLDRGMNDYITKPINPEQLFATLGRYL 707
>gi|452853017|ref|YP_007494701.1| putative Histidine kinase [Desulfovibrio piezophilus]
gi|451896671|emb|CCH49550.1| putative Histidine kinase [Desulfovibrio piezophilus]
Length = 1485
Score = 126 bits (316), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 141/296 (47%), Gaps = 57/296 (19%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE S +KS AN SH++R L G+ G+++L ++L R A
Sbjct: 1095 LKAKELAEAASQSKSEFLANMSHEVRTPLNGVLGMLQLAQT-----TDLTEEQRDYVDTA 1149
Query: 417 ----NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
LL ++N ILD SK+EAGK++++ E F +L++DV+ F A KG+++VLD
Sbjct: 1150 LSSGRSLLSIINDILDFSKIEAGKLEVVTEPFSFSQLVQDVLMTFRGQARNKGIDLVLDL 1209
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
D KG +L+QIL NL+ N VKFT++GH+ + A + +
Sbjct: 1210 PDEIPEPLVGGKG---RLRQILFNLVGNGVKFTTDGHVGIFAQILR-------------- 1252
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+RD + V+DTG GIP +K + +FE + Q
Sbjct: 1253 -------------------------QKRDAGTLLLLICVEDTGIGIPDDKIEDIFEPFTQ 1287
Query: 593 VK----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
V GTGLGLGIV+ LV L+ G + I D E G RGT + I S
Sbjct: 1288 VDGSYVRQHQGTGLGLGIVKRLVDLLNGTLTI-DTEEG-RGTALYLTMEFGIESMS 1341
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 19/173 (10%)
Query: 964 LKTGNSSGEGSSRYKQTE--IEEEDGERSQAQKPLR--GKKILVADDSMMLRRVAEINLR 1019
L G G++ Y E IE S P R GK+ LV +D+ + R +A L
Sbjct: 1317 LTIDTEEGRGTALYLTMEFGIESMSLAESLGNFPDRSSGKRFLVVEDNRVNRILAARMLA 1376
Query: 1020 HLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079
LG + +G AL+ +++ +D + MD +MP M+G T +IR
Sbjct: 1377 KLGHDSDVACDGWEALEKLKNE-------------DFDAVFMDIQMPGMDGVATTSRIRA 1423
Query: 1080 EEKRNQVH--IPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+ + ++ IPI+A+TAH + + I++GMD ++ KP+ D + I L
Sbjct: 1424 AKPGSGINPEIPIVAMTAHAMLGDREVFIDSGMDEYIAKPVELDEISSTIARL 1476
Score = 40.0 bits (92), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
G++++ + ++LV DD+ R + +++L G V ++G ++L
Sbjct: 2 GDKARGVYRVSSSQVLVIDDNPTFRALVQVHLAKKGYDVVEADSGPEGIELFM------- 54
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI 1106
H LP D +L+D MP M+G+E + IP+I +T E+A K +
Sbjct: 55 -----HNLP-DVVLVDLRMPEMDGHEVLVDL----AGRSAEIPLIVITGDSQIEDAIKAL 104
Query: 1107 EAG 1109
G
Sbjct: 105 RNG 107
>gi|434397675|ref|YP_007131679.1| Cache sensor hybrid histidine kinase [Stanieria cyanosphaera PCC
7437]
gi|428268772|gb|AFZ34713.1| Cache sensor hybrid histidine kinase [Stanieria cyanosphaera PCC
7437]
Length = 950
Score = 126 bits (316), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 152/303 (50%), Gaps = 44/303 (14%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A AE + KS AN SH++R L I G +L E + + NL +N
Sbjct: 473 QAKDIAELANRAKSEFLANMSHELRTPLNAILGFTQLMNRETSLTKKQQENLGIINRSGE 532
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +LD +K+E+G+M DFD+ LL + ++ A KG++++++ S ++
Sbjct: 533 HLLSLINDVLDLAKIESGQMTFYPTDFDLYTLLNLIEEMLALKAESKGLQLLIERS-SNL 591
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ ++ D KL+Q+L NLL NA+KFT++G +++R + +
Sbjct: 592 PRY--IQTDDKKLRQVLINLLGNAIKFTNDGSVTLRVSLVREE----------------- 632
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG- 596
+ K+ GD+ FEV+DTG GI E+ +FE +VQ + G
Sbjct: 633 ------EEKRGTGDI-------------CLAFEVEDTGAGIADEEIDNLFEPFVQTQTGK 673
Query: 597 --EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
+ GTGLGL I + V LMGG+I + + +GT F+F + + EA+ + Q ++
Sbjct: 674 QLQQGTGLGLPISKEFVELMGGEISVSSQVG--KGTIFKFYIQALLSEANRIEAKLQTKR 731
Query: 655 ELA 657
+A
Sbjct: 732 VIA 734
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 21/138 (15%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ DD R++ L+ +G V+ NG+ A+QL S PH+ I
Sbjct: 743 RILIVDDRWENRQLLIKLLQPIGFQVQEATNGQEAVQLWESW--------QPHL-----I 789
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MPIMNGYEAT++I+ K IIALTA EE + AG D + KP
Sbjct: 790 WMDMRMPIMNGYEATQQIKSHLKGQAT--AIIALTASTLEEEKAVVLSAGCDDFVRKPFR 847
Query: 1120 RDHLME------AIKYLH 1131
+ E ++YL+
Sbjct: 848 EKVIFEKMSQYLGVRYLY 865
>gi|365538837|ref|ZP_09364012.1| signal transduction histidine kinase-like protein [Vibrio ordalii
ATCC 33509]
Length = 1273
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 158/354 (44%), Gaps = 66/354 (18%)
Query: 327 GVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALA 386
G L+ L + +KE L EA +QAE + KS AN SH+IR +
Sbjct: 506 GQLVGFLGIAYDLTEQLQKEKELA-------EAKEQAEYANRAKSDFLANMSHEIRTPMN 558
Query: 387 GITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV 446
I GL+++ + S+ L + A LL LLN ILD SKVEAGK++L + F +
Sbjct: 559 AILGLLQMT-LNTNLSSQQIDYLSKTQSAAKSLLVLLNDILDFSKVEAGKLELEQYSFSL 617
Query: 447 GELLEDVVDLFHPVAMRKGVEVVLD--PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKF 504
+LL++ L K +E++ D P ++L GD ++L+QIL NL SNA+KF
Sbjct: 618 PDLLQETAVLLSSSLQEKDIEIIYDVAPDVPTIL-----IGDSLRLRQILLNLASNAIKF 672
Query: 505 TSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENA 564
T+ G I + ++ +N
Sbjct: 673 TNSGEIKI-----------------------------------------SIETQHISDNN 691
Query: 565 MEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
F+V DTG G+ +E++ +F + Q + GGTGLGL IV+ LV LM GDI +
Sbjct: 692 CTLLFKVSDTGIGMTQEQKAIIFNGFSQAESSISRKYGGTGLGLSIVKRLVSLMQGDISV 751
Query: 621 VDKENGERGTCFRFNVFLAIREASAND---NNTQGEKELAGGDSAAGDTQLQHM 671
+ ++G+ F F + L ND + TQG K L D+ LQ +
Sbjct: 752 TSQ--LDKGSEFTFTITLNFSPV-CNDIYSHLTQGLKILVVEDNETARLILQDI 802
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 15/157 (9%)
Query: 974 SSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEA 1033
++R + + E R + L G IL+ +D+ R VA LR GAT+ E+G
Sbjct: 907 NTRQSKDAVFAETFHRINSNDSLSGISILLVEDNPTNRLVATELLRQCGATIIEAEDGFK 966
Query: 1034 ALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIAL 1093
AL +++ N Q + +LMD +MP M+GYE TRKIR+E K +Q +PI+A+
Sbjct: 967 ALDILK---NQQ----------FSLVLMDIQMPGMDGYETTRKIRQEMKFHQ--LPILAM 1011
Query: 1094 TAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
TA+ E+ ++ AGM+ H+ KP +++ I++
Sbjct: 1012 TANARPEDKATSLAAGMNGHIAKPFEITDVVKKIQHF 1048
>gi|335042046|ref|ZP_08535073.1| multi-sensor hybrid histidine kinase [Methylophaga
aminisulfidivorans MP]
gi|333788660|gb|EGL54542.1| multi-sensor hybrid histidine kinase [Methylophaga
aminisulfidivorans MP]
Length = 1177
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 149/300 (49%), Gaps = 52/300 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA ++AE + KS AN SH+IR + I G EL Y E +++++ ++ +
Sbjct: 687 LEAKEKAEVANRTKSEFLANMSHEIRTPMNAIIGFTELLY-EQVKDNKIKSYVKTIQSAG 745
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
NDL+ L+N ILD SK+EAGK+++ + L E++ +F KGVE+VL+ D
Sbjct: 746 NDLMLLINDILDLSKIEAGKLEINYAATNPHVLFEELSHIFSVPLRNKGVELVLE-VDAE 804
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ + + D V+L+Q+L NLL NAVKFT G I++RA V + IG S+ G
Sbjct: 805 IPQ--SLMLDVVRLRQVLLNLLGNAVKFTESGRITMRARVDNKNNIG------SKLG--- 853
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+V+DTG GIP+++ +FE++ Q
Sbjct: 854 ------------------------------LRIDVEDTGLGIPEDQLDRIFEDFNQTVGQ 883
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF---NVFLAIREASANDNN 649
+ GGTGLGL I L++LMGG + + K +G+ F NV +A A NN
Sbjct: 884 DTAKFGGTGLGLSICSRLIKLMGGTLTV--KSQLGKGSIFTVHLDNVVVAAIAAETTLNN 941
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILV DD RR+ + + ENG+ ++ ++ P D +L
Sbjct: 955 ILVVDDIEDNRRLVAESFSTSALKIIEAENGKEGVEAMKHH-------------PIDLVL 1001
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD MP+M+GY+A KI+ E IP+IALTA + ++ D+ D H+ KP+ +
Sbjct: 1002 MDLRMPVMDGYQAAEKIKAE-----FDIPVIALTASVMKDDFDRLKSEHFDAHIRKPVKK 1056
Query: 1121 DHL 1123
L
Sbjct: 1057 AEL 1059
>gi|296271900|ref|YP_003654531.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
7299]
gi|296096075|gb|ADG92025.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
7299]
Length = 1420
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 148/281 (52%), Gaps = 53/281 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQMNVCAN 417
A + AE+ ++ KS AN SH+IR ++G+TGLI L + P L+ + L + +N
Sbjct: 708 AKKNAEKANVVKSEFLANMSHEIRTPISGVTGLISL--ILDMPLEPLQRDYLNKAKKSSN 765
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK+EAGK+ +IE+DF + E+ +++ +LF +K +E DG++
Sbjct: 766 ALLSIINDILDYSKIEAGKLDIIEQDFSLEEIFKNISNLFGYETYKKQLEFTF-VLDGNI 824
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
S + GD ++L QIL+NL+ NA+KFT G++++++ +K
Sbjct: 825 P--SLIIGDSLRLTQILNNLVGNAIKFTENGYVALKSEIK-------------------- 862
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV---- 593
+ +E+ + F ++DTG GI KE +K +F + Q+
Sbjct: 863 ---------------------EINEDVVVLRFCIEDTGIGISKEGQKKLFNTFEQLDTSN 901
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
K G+GLGL I + L+ LM G I ++ E G +G+ F F
Sbjct: 902 KRKYSGSGLGLSITKQLIELMHGKI-WLESEEG-KGSKFYF 940
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 17/128 (13%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L K+ L+ +D+ + V++ L LG ++ +GE A++ +
Sbjct: 1096 LNKKRALLVEDNETNQIVSKAILEKLGFIIDIANDGEEAIKSAKD-------------FS 1142
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD I MD +MP ++G+EAT++IRE +K+ IPIIAL+A + ++ T E GM+ H+
Sbjct: 1143 YDIIFMDLQMPNIDGFEATQRIREFDKK----IPIIALSAAVMQKDKMLTKEVGMNAHIP 1198
Query: 1116 KPLNRDHL 1123
KP+ ++ L
Sbjct: 1199 KPIIKEEL 1206
>gi|163795672|ref|ZP_02189637.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199]
gi|159178968|gb|EDP63503.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199]
Length = 1188
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 155/329 (47%), Gaps = 63/329 (19%)
Query: 341 RAARKEMHLCAS----LIKQMEATQ-QAERKSMNKSLAFANASHDIRAALAGITGLIELC 395
RAAR E+ A L +Q++A + +AE KS A SH++R + G+ G+IEL
Sbjct: 638 RAARDELEEQAQSLRDLAEQIDAARLRAEEAGAAKSRFLAVMSHELRTPMTGLLGMIELA 697
Query: 396 YVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVD 455
E + +R M A LL LLN ILD SK+EAGK+QL E F +++ DV
Sbjct: 698 S-RTELSKEQQGYVRIMRDSAETLLALLNDILDFSKLEAGKVQLEEITFAPEQIIGDVFG 756
Query: 456 LFHPVAMRKG--VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVR 513
LF A KG +E L PS + V+GD +++KQILSNL+SNA+KFT++G I+VR
Sbjct: 757 LFQAQASAKGLVLEADLRPS-----VPAWVRGDPLRVKQILSNLISNAIKFTTKGRITVR 811
Query: 514 -ACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVD 572
+ PS + + EV
Sbjct: 812 LGATEGPSGL------------------------------------------VRLQGEVI 829
Query: 573 DTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGER 628
DTG+GI + +F+ + Q GGTGLGL I + L MGG I V+ E G R
Sbjct: 830 DTGQGIAAGVLEHLFQAFEQGDSSTTRQFGGTGLGLAISRRLAEGMGGSI-TVESELG-R 887
Query: 629 GTCFRFNVFLAIREASA-NDNNTQGEKEL 656
G+ FRF V + + A D E EL
Sbjct: 888 GSVFRFAVLVRVSTVPAVEDQRLADEDEL 916
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
P ++IL+A+D+ + R + L G V+ +G+ ALQ A +
Sbjct: 917 PTLPRRILLAEDNDVNRMLVSKVLGQSGHQVDEVADGQQALQ-------------AATRV 963
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
YD ILMD +MP+M+G EATR IR+ +PI+ALTA E +AG+D L
Sbjct: 964 TYDLILMDMQMPVMDGVEATRAIRQLPG-AAATVPIVALTADALPEHRHIYFDAGIDELL 1022
Query: 1115 GKPLNRDHLMEAIKYL 1130
KP++ L I L
Sbjct: 1023 TKPVDWRLLDRTIARL 1038
>gi|121605276|ref|YP_982605.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
CJ2]
gi|120594245|gb|ABM37684.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
CJ2]
Length = 1124
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 144/313 (46%), Gaps = 58/313 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+ A Q AE K+ A SH+IR L G+ G+ L E +E L+ + + +
Sbjct: 455 VRARQVAEEAVRAKAAFLATMSHEIRTPLNGVVGMSTLL-AETALDAEQRDILQTIRLSS 513
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDG 475
+ LL +++ ILD SK+E+G+ L E V ++E+ D+ P A KG+E+++D P
Sbjct: 514 DQLLAVISDILDFSKIESGRFDLESEPVSVHNMIEEACDIAAPRAREKGIELIVDVPGAA 573
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ + GD +L+QIL NL++NAVKFT G +SV H L
Sbjct: 574 AGGPPPAILGDVTRLRQILINLVNNAVKFTEHGAVSV-------------------HSRL 614
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFT-FEVDDTGKGIPKEKRKTVFENYVQVK 594
A DE + F V DTG GIP E+ +FE ++QV
Sbjct: 615 ---------------------AEAPDEQGLALIEFSVHDTGIGIPPERVGALFEAFMQVD 653
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
GGTGLGL I + LV LMGG I + K +G+ F F V A+ E
Sbjct: 654 ASTTRKYGGTGLGLAICKRLVELMGGKISVTSKLG--KGSIFSFTVRAALAELP------ 705
Query: 651 QGEKELAGGDSAA 663
KEL D+AA
Sbjct: 706 ---KELTPLDAAA 715
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVADD+++ +VA L LG +G A+ V +N R GA IL
Sbjct: 856 ILVADDNVVNLKVACGILARLGYDAVTAADGVQAVTAVADSMNSARRFGA--------IL 907
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD MP M+G EAT+ I++ + PIIALTA S E+ ++ AGMD +L KPL
Sbjct: 908 MDLHMPGMDGLEATQTIKK--RFGHAAPPIIALTADASIEDRERCEAAGMDDYLTKPLQV 965
Query: 1121 DHLMEAI 1127
L A+
Sbjct: 966 VELTRAL 972
>gi|332141097|ref|YP_004426835.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype']
gi|327551119|gb|AEA97837.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype']
Length = 1236
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 140/287 (48%), Gaps = 53/287 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP-GSELETNLRQMNVC 415
M+AT++A + S KS +N SH++R L G+ G L ++ P + E + M +
Sbjct: 500 MKATEEARKASSVKSSFISNISHEMRTPLNGVVG--SLSLLKRQPLNDKAEQLVSMMEIS 557
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
N+L L+N +LD SK+EAGK+ + + F+ L+E + +F A KG+E+++D +
Sbjct: 558 CNNLSVLINDVLDLSKIEAGKLDINHQLFEPLTLIESLAKVFAVKAATKGLELIVDTTG- 616
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
L ++ DR +L Q+LSNLL+NA+KFT +GHI + A +
Sbjct: 617 --LPRVEINSDRHRLNQVLSNLLNNAIKFTEKGHIQLNAAL------------------- 655
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
Y+N D + F V DTG GI E + +F + Q
Sbjct: 656 -------YEN---------------DAGLQQLHFSVSDTGVGIAPESQPKLFTAFTQADA 693
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
V GGTGLGL I + L +L+GGDI K + G+ F F V L
Sbjct: 694 SVATQYGGTGLGLSICKQLTQLLGGDITF--KSVVDVGSTFSFYVTL 738
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 988 ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
+ S Q + +L+ DD+++ R VA+ L L + C +GE + ++ R
Sbjct: 907 QTSDPQLSIEDANLLIVDDNLINREVAKGVLESLPGKMFTCCDGEEVIAFLQKCEKKGRR 966
Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH--IPIIALTAHISGEEADKT 1105
+ + ILMDC+MP M+GYE TR IR E K +H +PIIA+TA+ E +K
Sbjct: 967 IHS--------ILMDCQMPNMDGYETTRAIR-EGKAGPLHANVPIIAMTANAMLGEKEKC 1017
Query: 1106 IEAGMDVHLGKPLNRDHLMEAIK 1128
+EAGMD KP+ D L+ +K
Sbjct: 1018 LEAGMDDFTTKPVIADVLIPKVK 1040
>gi|109631212|gb|ABG35782.1| SHK300 [Striga asiatica]
Length = 974
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 166/349 (47%), Gaps = 49/349 (14%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
+V +G LI + + A + + K E QAE + KS A SH+I
Sbjct: 335 LVFMIGFLIGYMAY-----SAVSHIVKVEDDFNKMQELKVQAEAADVAKSQFLATVSHEI 389
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGLLNSILDTSKVEAGKM 437
R + GI G+++L +EL + R C L+ L+N +LD +K+EAGK+
Sbjct: 390 RTPMNGILGMLQLLL-----DTELSSTQRDFAQTAQGCGEALITLINEVLDRAKIEAGKL 444
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
+L FD+ +L+DV+ LF + +KG+E+ + SD V GD + +Q++ NL
Sbjct: 445 ELEAVPFDLRSILDDVLSLFSEKSRQKGIELAVFVSDKVP---EIVVGDPGRFRQVIINL 501
Query: 498 LSNAVKFTSEGHISVRACV---KKPSA------IGNPSLSSSRHGFLQSISCLFYKN-KK 547
+ N+VKFT EGHI V+ + KP+ + N ++ + +S + L K
Sbjct: 502 VGNSVKFTEEGHIFVQVHLTAQSKPTKDAKLENLSNGEAEATPKSYSRSFNTLSGKQAAD 561
Query: 548 ARGDLEAV---------NAAQRDEN-------AMEFTFEVDDTGKGIPKEKRKTVFENYV 591
R E + N + + EN ++ T V+DTG GIP++ +K VF ++
Sbjct: 562 NRSSWEILRHLDEKLLYNPSSKAENDNNPKSESVSLTVCVEDTGIGIPEQAQKRVFTPFM 621
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
Q GGTG+GL I + LV LMGG + + + G+ F F V
Sbjct: 622 QADSSTSRNYGGTGIGLSISKCLVELMGGRMSFISLP--QVGSTFSFTV 668
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 80/149 (53%), Gaps = 18/149 (12%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
++G S + L GKKILV DD+++ RRVA L GA V+ E+G AL
Sbjct: 815 QNGRSSGLGRLLSGKKILVVDDNVVNRRVAAGALNKFGAEVKCAESGHEALAF------- 867
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE------EEKRNQVHIPIIALTAHIS 1098
L PH +D MD +MP M+G+EATR IRE EK + H+PI+A+TA +
Sbjct: 868 ---LQIPH--DFDACFMDIQMPEMDGFEATRLIREVEMKAKMEKNVEWHMPILAMTADVI 922
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
D+ ++ GMD ++ KP L +A+
Sbjct: 923 HATLDECLKCGMDGYVSKPFQEKTLYQAV 951
>gi|344208472|ref|YP_004793613.1| histidine kinase [Stenotrophomonas maltophilia JV3]
gi|343779834|gb|AEM52387.1| histidine kinase [Stenotrophomonas maltophilia JV3]
Length = 1175
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 164/344 (47%), Gaps = 62/344 (18%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
LL++ +VG+L++ R R+ + A L KQ + AE+ S K+ AN H
Sbjct: 765 LLVLASVGLLLTSWFAWLYRRRLQRRHAYQLA-LHKQ----ELAEQASAAKTRFLANLGH 819
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQ-MNVCANDLLGLLNSILDTSKVEAGKMQ 438
+IR + G+ G+ EL A P + Q + LL L+N LD +++E+G+++
Sbjct: 820 EIRTPMTGVLGMSELLL--ASPLDPQQRGYTQSIRHAGEHLLHLVNDALDLARIESGRLE 877
Query: 439 LIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLL 498
L + F + LL+D+ L P+A +KG+ L D + + GD ++++QIL NLL
Sbjct: 878 LQSQSFALNGLLQDLAALMGPLAAQKGLRFTL---DNQLPPGLQATGDAMRVRQILLNLL 934
Query: 499 SNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAA 558
SNAVKFTS G I++ A + G+L A++
Sbjct: 935 SNAVKFTSRGTITLHA--------------------------------RCDGELRALH-- 960
Query: 559 QRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE-----GGTGLGLGIVQSLVRL 613
FEV DTG GI +E+++ +F + Q GG+GLGL I + L
Sbjct: 961 ----------FEVRDTGPGISQEQQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAHA 1010
Query: 614 MGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELA 657
M G I+ V+ + G RGTCF + L + S + + +G ++ A
Sbjct: 1011 MQGRIQ-VESQLG-RGTCFGVTLPLPLVVDSDAEASAEGHRDEA 1052
>gi|170720805|ref|YP_001748493.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
gi|169758808|gb|ACA72124.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
Length = 1201
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 139/293 (47%), Gaps = 54/293 (18%)
Query: 353 LIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
L++++ EA Q A+ + KS A SH+IR + + G++EL A G T+L
Sbjct: 693 LVQELREAKQLADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRAHQGQIDRTSLEV 752
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV--EVV 469
+ A DLLGL+ ILD ++E+G + L E D+ L+E V +F A +KG+ +VV
Sbjct: 753 AHHSAKDLLGLIGDILDIVRIESGHLSLAPEPVDLAALVESVSRVFDGQARQKGLAFDVV 812
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
+ PS V D ++ KQILSNL+SNA+KFT +G + + C+++ + PSL
Sbjct: 813 IAPS-----ARCHVLLDPLRFKQILSNLISNAIKFTGQGQVRISLCLREEAPSAPPSLE- 866
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
EV DTG GI + + +F
Sbjct: 867 ---------------------------------------LEVRDTGIGIHDDDLQRLFNP 887
Query: 590 YVQV----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+VQ + GTGLGL I +SL +MG + I K + GT RF+V L
Sbjct: 888 FVQANPHSQGARAGTGLGLAICRSLCEMMGASLSI--KSVPDFGTQVRFSVPL 938
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+LV DD + L +LG + +G L+ R G +D I
Sbjct: 962 KVLVIDDHPANLMLMAQQLGYLGLSQATASDGREGLEKWREG-------------QFDVI 1008
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++DC MP MNGY+ +R EE++N + I+ TA+ E K + GMD L KP+
Sbjct: 1009 VLDCNMPHMNGYQLAAAVRAEERQNGRPPCVILGYTANAQPEVRQKCLSVGMDDCLLKPI 1068
Query: 1119 N 1119
+
Sbjct: 1069 S 1069
>gi|238760599|ref|ZP_04621729.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236]
gi|238701186|gb|EEP93773.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236]
Length = 1193
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 141/282 (50%), Gaps = 52/282 (18%)
Query: 353 LIKQMEATQQ-AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG-PGSELETNLR 410
LIK++ A ++ AE+ + KS A SH+IR L+ I GL+EL G PG+E +++
Sbjct: 683 LIKELSAARENAEQANRTKSTFLATMSHEIRTPLSAIIGLLELAVTNKGHPGTE--ESIQ 740
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
A+ L+GL+ ILD +K+E+GK++L E EL V+ +F +A +K +E+
Sbjct: 741 VAYESAHTLMGLVGDILDIAKIESGKLELTLEWMKFNELFSPVIPVFMGLARQKHLELT- 799
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
D VL ++ D ++L QI+ NL+SNA+KFT +G + ++
Sbjct: 800 --CDIDVLHPEEIYVDPIRLHQIMFNLVSNAIKFTEQGSVDIQ----------------- 840
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+ CL + D+ M V+DTG GIP++ + +F Y
Sbjct: 841 -------VKCL----------------SGSDQQVM-LELVVNDTGVGIPQDDQPQIFSPY 876
Query: 591 VQVKEG--EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGT 630
Q G + GTGLGL I LV +MGG IE+ + RGT
Sbjct: 877 KQSDAGKKQVGTGLGLSICAQLVSMMGGTIELFSQPG--RGT 916
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R ILV DD R + + L LG V NG ALQL R H+
Sbjct: 945 RPLSILVVDDHSANRLLLKRQLSFLGHHVIEAINGVQALQLWRKS----------HV--- 991
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
+ I+ DC MP+M+G E T+ +R+E+ QV + I+ LTA+ EE + + AGMD L K
Sbjct: 992 ELIITDCSMPVMDGLELTKCLRKEQ---QVPLIILGLTANAQPEERARCLAAGMDDCLFK 1048
Query: 1117 PLNRDHL 1123
PL L
Sbjct: 1049 PLQLSQL 1055
>gi|350554058|ref|ZP_08923199.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349788951|gb|EGZ42935.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1245
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 137/287 (47%), Gaps = 49/287 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA ++A+ + KSL A+ SH+IR L GI G ++ + + +R ++
Sbjct: 777 EAQERADTANQAKSLFLASMSHEIRTPLNGIIGFAQILARDYSLTPKQSEYVRTIDRSGQ 836
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK+EAG+++L EDF + +LL+D+ +F A KG++ +++ +
Sbjct: 837 HLLMVINDILDFSKIEAGRLRLNLEDFRLSKLLDDLQGMFAARAQAKGLDFLIECEHDTP 896
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ D KL+Q+L NL+ NA+KFT G IS+R
Sbjct: 897 ---EVIYSDEAKLRQVLINLIGNAIKFTHHGGISLR------------------------ 929
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG- 596
+ A +E FEV+D+G GIP E K +FE + Q G
Sbjct: 930 ----------------VRSQAHPEEQLRILCFEVEDSGVGIPHEDLKHIFEAFHQSVSGI 973
Query: 597 -EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GGTGLGL I Q +++ MGG++ E G RF F+ I E
Sbjct: 974 KAGGTGLGLPICQHIIQKMGGELTAQSTE----GQGSRFCFFIEIPE 1016
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ DD R + L +G +E +GE AL P D +L
Sbjct: 1044 VLIVDDKEDNRLLLRALLEPIGFVIEQANDGEQALACFMRH-------------PPDVVL 1090
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD MP+M+G+ ATR+I+ H+P+IA+TA EE +K + G+D ++ KP
Sbjct: 1091 MDLRMPVMDGFAATRQIKA-----MSHVPVIAVTAATLAEEGEKMQDCGIDAYVQKPF 1143
>gi|428300677|ref|YP_007138983.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
gi|428237221|gb|AFZ03011.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
Length = 1547
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 143/285 (50%), Gaps = 57/285 (20%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
A QAE+ S KS AN SH+IR A+ G+TGL+ +E E + + +
Sbjct: 876 ARHQAEQASQAKSAFLANISHEIRTPMNAILGMTGLL----LETTLNREQRDFIETIRIG 931
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
++LL L+N ILD SK+EAG+M L DF++ +ED++DL P+A K +E+ D
Sbjct: 932 GDELLTLINEILDISKLEAGEMALETLDFNLSTCVEDILDLLAPLAHSKELEIA-ALIDS 990
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
SV F ++GD KL+QI+ NL +NA+KFTS+G + +
Sbjct: 991 SVPIF--LQGDASKLRQIIVNLTNNAIKFTSQGEVVL----------------------- 1025
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
LE V+ D + F + DTG GI + + +F+ ++QV
Sbjct: 1026 ---------------GLELVSQTSTDAIIL---FNIKDTGIGISLKDQSKLFKAFIQVDA 1067
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL I + LV LMGG+I I + E G +G+ F F +
Sbjct: 1068 STTRKYGGTGLGLAICKQLVHLMGGEIGI-ESEVG-KGSNFWFKI 1110
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 80/132 (60%), Gaps = 16/132 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D+++ ++VA L+++G + NG+ L+L++ +PYD +
Sbjct: 1289 RILLAEDNVVNQKVALKQLQNIGYKADIAANGQEVLRLLKK-------------IPYDLV 1335
Query: 1060 LMDCEMPIMNGYEATRKI--REEEKRNQVHIPI-IALTAHISGEEADKTIEAGMDVHLGK 1116
MDC+MPI++G++ATR+I +E PI IA+TA+ E+ + ++AGMD ++ K
Sbjct: 1336 FMDCQMPILDGFDATREILNWQENTFAARRRPIVIAMTANAMKEDQQRCLDAGMDDYISK 1395
Query: 1117 PLNRDHLMEAIK 1128
P+++D L +K
Sbjct: 1396 PVSKDKLANVLK 1407
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LV DD+ R++ G V+ EN ALQL+ S A + YD ++
Sbjct: 1135 LLVVDDNATNRKIIYHQATSWGMRVDQAENAIVALQLLHSA--------AKENILYDLVI 1186
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
+D +MP ++G KI+ + ++ IP++ LT+ +E + +E G +L KP+
Sbjct: 1187 IDMQMPEIDGITLGAKIKADSAISE--IPLVMLTSTNGRDEVKQALEIGFYSYLVKPVKH 1244
Query: 1121 DHLMEAI 1127
L++ I
Sbjct: 1245 SRLLDNI 1251
>gi|260427268|ref|ZP_05781247.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
gi|260421760|gb|EEX15011.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
Length = 861
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 140/287 (48%), Gaps = 51/287 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +AE S KS AN SH+IR + G+ G+ EL E+ E + +
Sbjct: 321 EARIRAETASRAKSSFLANMSHEIRTPMNGVVGMAELLR-ESPLTDEQRLYVDTIRGSGE 379
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK+EA K++L E FD+ + +V+ L P A KG+E++ ++ +
Sbjct: 380 ALLVIINDILDYSKIEADKLKLSAESFDLERAVHEVLLLLQPTAREKGLEML---AEYDM 436
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+V GD +++QIL+NL+ NAVKFT+EGH+ VR RH
Sbjct: 437 FLPQRVVGDPGRVRQILTNLVGNAVKFTNEGHVLVRVL-------------GLRHAH--- 480
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
A++ V+DTG G+P +K + +F + Q ++
Sbjct: 481 -------------------------GALDVRITVEDTGVGVPADKIEHIFGEFNQAEDDR 515
Query: 598 G----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GTGLGL I + LV +M G+I V E G+ G+CF + LA+
Sbjct: 516 NRPFEGTGLGLAITKRLVEMMEGEI-WVKSEPGQ-GSCFGLRIPLAV 560
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEA--CENGEAALQLVRSGLND 1044
ER A+ R +L+A+D+ + V ++ LG + +NG A++ R +
Sbjct: 722 AERPVARPAPRPLDVLLAEDNRTNQLVFRKMVQKLGQPLRLRFADNGIEAVRAYR----E 777
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
QR D I MD MP M+G EATR+IR E +PIIA+TAH + +
Sbjct: 778 QRP---------DLIFMDISMPHMDGREATREIRALEA-GGPRVPIIAVTAHAMTGDREG 827
Query: 1105 TIEAGMDVHLGKPLNRDHL 1123
IEAG+D +L KPL + L
Sbjct: 828 VIEAGLDDYLTKPLRKAEL 846
>gi|406894840|gb|EKD39562.1| hypothetical protein ACD_75C00370G0001, partial [uncultured
bacterium]
Length = 870
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 146/308 (47%), Gaps = 54/308 (17%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
S+ K EA +AE KSL AN SH+IR + I G+ L + A +E L
Sbjct: 454 SMAKIGEARDRAEESDKAKSLFLANMSHEIRTPMNAIIGMSRLA-LAASENNEQHKLLDS 512
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
+ A+ LL ++N ILD SK+EAG++ L F +G L++ + +A KG+ V
Sbjct: 513 VKTSADSLLAVVNDILDFSKIEAGQLDLENHTFSLGTLVQSTIKSISVLARHKGIGVGYG 572
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
++ +V ++ V+GD+++L+QIL NLL NAVKFT G +S
Sbjct: 573 IAE-NVPEY--VRGDQMRLRQILLNLLGNAVKFTRRGTVS-------------------- 609
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
LE N A++D E F V DTG GIP E + +F+ +
Sbjct: 610 --------------------LEIRNVARQDLKT-ELLFAVRDTGIGIPLEHLEMIFDRFS 648
Query: 592 Q----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
Q + G GLGL I + L R+MGGDI++ + G+ F FN+ + + +D
Sbjct: 649 QSDISISRKHQGAGLGLAISRKLCRMMGGDIQVASEVG--MGSTFTFNI---VFDLPVDD 703
Query: 648 NNTQGEKE 655
+ E E
Sbjct: 704 ERSGAESE 711
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 44/171 (25%)
Query: 986 DGERSQAQK---------PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ 1036
D ERS A+ PL IL+ +D+ R +A + L EN + +
Sbjct: 702 DDERSGAESEPSWPGLKHPLH---ILLVEDNAANRELARMVL----------ENEKLQVT 748
Query: 1037 LVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR----------------EE 1080
L SG++ + L A + +D ++MD +MP M+G+ AT IR E
Sbjct: 749 LAESGMDALKKLAAGN---FDTVIMDIQMPEMDGFTATSIIRACESGKALSVDINEALEH 805
Query: 1081 EKRNQV---HIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
R+++ H PIIALTAH + ++ I AG D +L KP + +M A++
Sbjct: 806 NLRDRLYGRHQPIIALTAHAMRGDRERCIAAGADDYLTKPFVPEQVMAALR 856
>gi|357632713|ref|ZP_09130591.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|357581267|gb|EHJ46600.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 943
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 146/309 (47%), Gaps = 60/309 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +QAE S KS AN SH+IR L+GI GL ++ + P E+ NL + +
Sbjct: 434 ARRQAEAASRAKSDFLANMSHEIRTPLSGIIGLTQMTLSQT-PRPEVRENLEMILDSSRS 492
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LLG++N ILD SK+EAGKM+ DFD+ E L+ + F + +KG+++ SV
Sbjct: 493 LLGIVNDILDFSKIEAGKMEFSSVDFDLREALDRTMKPFQFSSRQKGLKL-------SVR 545
Query: 479 KFSKV----KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
S V GD ++ Q++ NL+ NA+KFT +G ++V + +P G+P L
Sbjct: 546 IASDVPEVLNGDPDRIMQVVRNLVGNALKFTDQGEVAVEFRLLRP---GDPLL------- 595
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+ C V DTG GIP+++ +F+ + Q++
Sbjct: 596 ---VEC-----------------------------SVRDTGIGIPEDRLPDLFQVFTQLE 623
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
GGTGLGL I + LV +MGG I + + N G+ F F V L D
Sbjct: 624 ASRTKRFGGTGLGLAISRRLVEMMGGTIGVESRSN--HGSTFSFTVSLRPAREEQRDEAR 681
Query: 651 QGEKELAGG 659
LAGG
Sbjct: 682 VETAVLAGG 690
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 14/132 (10%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G ++L+A+D+ + R + L G V +G AL L+ G P D
Sbjct: 693 GLRVLLAEDNQVNRLFLKHFLVEAGCEVRLAGSGGEALALLAQG-------------PAD 739
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
+LMD +MP M+G EATR+IR+ E +P++ALTA+ + ++ + AG+D ++ K
Sbjct: 740 LVLMDIQMPEMDGTEATRRIRDGEVGEAARRLPVVALTAYSMKGDRERFLSAGLDDYVSK 799
Query: 1117 PLNRDHLMEAIK 1128
P++ D L ++
Sbjct: 800 PVDVDELFMVMR 811
>gi|428305786|ref|YP_007142611.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
gi|428247321|gb|AFZ13101.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
Length = 1034
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 144/289 (49%), Gaps = 59/289 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNV 414
EA Q AE KS AN SH+IR A+ G+TGL+ +E SE + L + +
Sbjct: 364 EARQAAESAVKMKSAFLANMSHEIRTPMNAVIGMTGLL----LETEVTSEQKDFLETIRI 419
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV-VLDPS 473
A++LL ++N ILD SK+EAG+M L +F + + +E+V +L A KG+E+ P+
Sbjct: 420 SADNLLTIINEILDFSKIEAGEMHLETINFGLHQCVEEVAELLATSAQEKGIEITTFVPA 479
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ V KGD +L+QIL+NL+SNA+KFT G +++
Sbjct: 480 NIPV----TFKGDPTRLRQILTNLVSNAIKFTEVGGVTI--------------------- 514
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
Y N ++ ++A F V DTG G+ ++K +F+++ Q
Sbjct: 515 ---------YVNLQSETSVDAT-----------MHFGVKDTGIGLSPAQQKKLFQSFSQA 554
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I ++LV LMGG+I I + GE G F F + L
Sbjct: 555 DASTTRKYGGTGLGLAICKALVELMGGEIGITSAQ-GE-GATFWFTITL 601
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 83/130 (63%), Gaps = 14/130 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KI++A+D+ + ++VA L++LG + NG+ L+ + D+++ YD +
Sbjct: 780 KIILAEDNKVNQKVALNQLKNLGYAADVANNGQEVLEQL-----DKQN--------YDLV 826
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMDC+MPI++GYEAT +IR +E +N+ H IIALTA E+ DK I +GMD L KP+
Sbjct: 827 LMDCQMPILDGYEATAEIRRQEGKNK-HTIIIALTASAMKEDLDKCIASGMDDFLSKPVR 885
Query: 1120 RDHLMEAIKY 1129
++ L+E +++
Sbjct: 886 KEALLEKLEH 895
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 968 NSSGEGSSRYKQTEIEEEDGERSQ-----AQKPLRGKKILVADDSMMLRRVAEINLRHLG 1022
++ GEG++ + + ++ + Q A L+ ++LV +D + R + G
Sbjct: 587 SAQGEGATFWFTITLNKQPTTQPQNLENPALDRLKKVRLLVVEDFLDTRSAIAHHTTAWG 646
Query: 1023 ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK 1082
V+ ENG A+Q ++ ++ PY + L+D +P M+G ++ I+ + K
Sbjct: 647 MQVDLAENGATAIQDLQQAVDSNN--------PYQFALIDLNLPDMDGETLSKTIKADPK 698
Query: 1083 RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ + ++ + E+A K + + +L KP+ ++ ++
Sbjct: 699 LAKTQLILMIPVNQL--EQAKKLLNVTIVDYLIKPVKTSKMLNSL 741
>gi|300865281|ref|ZP_07110095.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
gi|300336754|emb|CBN55245.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
Length = 963
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 163/302 (53%), Gaps = 26/302 (8%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A + A++ + KS +N SH++R L I G +L ++ E + +L ++
Sbjct: 419 AKEAADKANRAKSEFLSNMSHELRTPLNAILGFTQLLARDSSLKFEQKEHLGIISRSGEH 478
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N+IL SK+E G++ + + +FD+ LLE + +F A +K +++++D +
Sbjct: 479 LLNLINNILQMSKIEVGQVTVNKNNFDLYRLLESIEKMFQLQAEKKNLQLIIDIAPDLP- 537
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS--SSRHGF-- 534
V+ D KL+Q L N+L NA+KFT EG +++R +K+ AI S + F
Sbjct: 538 --QYVQTDESKLRQTLINILGNAIKFTQEGGVTLRVRMKE-EAIKKKEDERISQKDNFPV 594
Query: 535 --LQSIS---CLFYKNKKARGDLEAVNAAQRDENAMEFT--------FEVDDTGKGIPKE 581
L+SI KN++ + E + + +N++ F+ FE++DTG GI E
Sbjct: 595 KQLKSIDLEPIEIAKNQEKIYNWELTESTKNIKNSLCFSDDSSFFLQFEIEDTGLGIAPE 654
Query: 582 KRKTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ +F+ +VQ + G + GTGLGL I + V+LMGGDI + N +G+ F+FN+ +
Sbjct: 655 EIDNLFKPFVQTESGMKAQEGTGLGLPISRQFVQLMGGDITVNSDIN--KGSIFKFNIEI 712
Query: 639 AI 640
++
Sbjct: 713 SL 714
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL DD + R + L LG V A ENG A+ L S PH+ I
Sbjct: 740 RILAVDDRIESRLLLVRLLTSLGFCVRAAENGAVAVDLWSSW--------EPHL-----I 786
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD MP+M+GYEAT++I+ K Q + IIALTA EE + G D + KP
Sbjct: 787 LMDMRMPVMDGYEATKRIKAHLK-GQATV-IIALTASAFDEERSIILSTGCDDFVAKPFR 844
Query: 1120 RDHLMEAI-KYL 1130
++E + KYL
Sbjct: 845 EQVILEKMAKYL 856
>gi|374301703|ref|YP_005053342.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
Length = 842
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 140/281 (49%), Gaps = 43/281 (15%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A Q AE + KS A+ SH+IR + GI GL EL ++ P +++ L+ + AN
Sbjct: 448 QAKQAAEAANQAKSEFLASMSHEIRTPMNGIIGLTELALMQE-PKAKIRDYLQMVKQSAN 506
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV--EVVLDPSDG 475
LL ++N ILD SK+EAG+++L DFD+ ++L+ + + A RKG+ +DP
Sbjct: 507 SLLDIINDILDLSKIEAGRVELEHADFDLRDMLDSLFETMRIGAERKGLSFSTAIDP--- 563
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
V + +KGD +L+QI NL+ NA+K+T G +SVR V
Sbjct: 564 GVPDW--IKGDEGRLRQIFVNLIGNAIKYTEAGQVSVRVGV------------------- 602
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
++ + D N +R + V DTG GIPK+K +FE +
Sbjct: 603 --------EDGRGAQDAGGRNTPER----VCLVASVKDTGGGIPKDKLGRIFEPFDTGAR 650
Query: 596 GE--GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
GTGLGL I + LV LMGG I V E G RG+ F F
Sbjct: 651 SAKYDGTGLGLAITKRLVELMGGRI-TVQSELG-RGSTFSF 689
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 14/134 (10%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R +IL+A+D+ + R +A L+ LG V ++G AL++ L+ +R +
Sbjct: 715 RTLRILLAEDNEINRFLAVELLKGLGHEVTTVQDGRQALEI----LSKER---------F 761
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D +LMD +MP M+G E TR+IR E + H+PI+ALTA+ + ++ + AGMD +L K
Sbjct: 762 DLVLMDVQMPQMHGDEVTRRIRAGEAGDP-HVPIVALTAYALKGDRERFLAAGMDDYLSK 820
Query: 1117 PLNRDHLMEAIKYL 1130
P++ L +K +
Sbjct: 821 PIDMQELERVLKRI 834
>gi|334120096|ref|ZP_08494179.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457278|gb|EGK85903.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1232
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 172/343 (50%), Gaps = 34/343 (9%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
+ +T+ + S L F+ A+ E L + +++ A A+ + KS ++ SH++
Sbjct: 655 VQLTIAIQQSTL---FEQAKTELAERKLAETALQK--AVVAADTANRAKSEFLSSMSHEL 709
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE 441
R L I G ++ ++ ++ +L +N LL L+N IL+ SK+EAG+ QL E
Sbjct: 710 RTPLNAILGFSQVMVRDSSLNNQHLQHLEIINRAGEHLLALINDILEMSKIEAGRSQLNE 769
Query: 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNA 501
F++ LL+ + ++F A K +++ L+ DG V F V GD KL+QIL NL+ NA
Sbjct: 770 SSFNLMRLLKTLEEMFRLKAKSKKLQLNLEVGDG-VPDF--VSGDEGKLRQILINLVGNA 826
Query: 502 VKFTSEGHISVRACVKKPSAIG--NPSLSSSRHGFL-------QSIS------------C 540
+KFT G +++R K ++G S ++ + +S++ C
Sbjct: 827 IKFTEMGSVTLRVKKKVEKSLGAETAEFSDTQTKLVGAGCEHSESLAVETAAIQRKPGWC 886
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG-- 598
+ ++ + V+A + FE++DTG GI E+ +FE + Q K G+
Sbjct: 887 TGFNQSESLAHCDCVDAHDLHPEVLRLQFEIEDTGLGIAAEEMNKLFEPFEQTKTGQKSQ 946
Query: 599 -GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GTGLGL I + V++MGGDI + E G+ F F++ +++
Sbjct: 947 QGTGLGLPISRKFVQMMGGDITV--SSTPELGSKFAFDIQISL 987
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD V + L LG V +G+ A+ + PH+ I
Sbjct: 1013 RILVVDDRADNCLVIDRLLSPLGILVREARDGQEAIAVWEDW--------QPHL-----I 1059
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD +MP+M+GYEATRKI+ Q I+ALTA EE + AG D + KP
Sbjct: 1060 WMDMQMPVMDGYEATRKIKAHPLGKQT--VIVALTASAFEEERQTILGAGCDDFMRKPF 1116
>gi|428214525|ref|YP_007087669.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002906|gb|AFY83749.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1970
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 146/288 (50%), Gaps = 49/288 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A +QA + KS AN SH+IR + G+ G+ EL + + + ++ + +
Sbjct: 1284 VKAREQALEAARLKSQFLANMSHEIRTPMNGVLGMTELL-LRTQLTEQQQDFVKTLKISG 1342
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE----VVLDP 472
+LL L++ ILD SK+EAG+M+L +FD+ LED VDLF A K +E V LD
Sbjct: 1343 ENLLTLIDDILDFSKLEAGEMRLDHHEFDLNRTLEDTVDLFTLSAASKEIELAFLVALD- 1401
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
V ++ +KGD +L+QIL+NLL NA+KFT G + + V + + S
Sbjct: 1402 ----VPRY--LKGDASRLRQILTNLLGNAIKFTERGEVVI--TVNRADSTPEQS------ 1447
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
LEA + A R + TF V D+G GI K +F+++ Q
Sbjct: 1448 -------------------LEAPDGAAR----LSLTFSVRDSGIGIGPSDCKKLFQSFSQ 1484
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
V GGTGLGL I + L +LMGG+I V+ + G G+ F F V
Sbjct: 1485 VDTSTTRKYGGTGLGLAICKQLTQLMGGEIG-VESQLG-VGSIFWFTV 1530
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
++ IL+ +D+ + ++V L LG + NG+ AL ++ +
Sbjct: 1714 IKALNILLVEDTRINQKVVLNQLESLGFEADCANNGQEALDKMQ-------------VKE 1760
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
Y+ + MDC+MP+++GY+ATR IR E ++ H+ +I LTA+ + K + AGMD +L
Sbjct: 1761 YNLVFMDCQMPVLDGYDATRAIRHREG-DRRHMVVIGLTAYAMEGDRQKCLAAGMDDYLT 1819
Query: 1116 KPLNRDHLMEAIK 1128
KP++ L AI+
Sbjct: 1820 KPVSVKDLQRAIR 1832
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 22/138 (15%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LRGKK+L+ DDS + R+V H G V E+G A++L+R ++ P
Sbjct: 1557 LRGKKLLIVDDSPINRQVVRQQASHWGMEVSEAEDGLEAIKLLRKAVSTGN--------P 1608
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI------SGEEADKTIEAG 1109
+ L+D +MP M+G + I + P++A T+ I +A K ++ G
Sbjct: 1609 FTLALLDMQMPKMDGEILGQLILTD--------PLLATTSLIMMTSINESYQARKFLDLG 1660
Query: 1110 MDVHLGKPLNRDHLMEAI 1127
+L KP+ L+E +
Sbjct: 1661 FSAYLIKPIKEARLLECL 1678
>gi|386719555|ref|YP_006185881.1| Histidine kinase/response regulator hybrid protein [Stenotrophomonas
maltophilia D457]
gi|384079117|emb|CCH13712.1| Histidine kinase/response regulator hybrid protein [Stenotrophomonas
maltophilia D457]
Length = 1168
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 158/327 (48%), Gaps = 62/327 (18%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
LL++ +VG+L++ R R+ + A L KQ + AE+ S K+ AN H
Sbjct: 758 LLVLASVGLLLTSWFAWLYRRRLQRRHAYQLA-LHKQ----ELAEQASAAKTRFLANLGH 812
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQ-MNVCANDLLGLLNSILDTSKVEAGKMQ 438
+IR + G+ G+ EL A P + Q + LL L+N LD +++E+G+++
Sbjct: 813 EIRTPMTGVLGMSELLL--ASPLDPQQRGYTQSIRHAGEHLLHLVNDALDLARIESGRLE 870
Query: 439 LIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLL 498
L + F + LL+D+ L P+A +KG+ VL D + + GD ++++QIL NLL
Sbjct: 871 LQSQSFALNGLLQDLAALMGPLAAQKGLRFVL---DNQLPPGLQATGDAMRVRQILLNLL 927
Query: 499 SNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAA 558
SNAVKFTS G I++ A + G+L A++
Sbjct: 928 SNAVKFTSRGTITLHA--------------------------------RCDGELRALH-- 953
Query: 559 QRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE-----GGTGLGLGIVQSLVRL 613
FEV DTG GI +E+++ +F + Q GG+GLGL I + L +
Sbjct: 954 ----------FEVRDTGPGISQEQQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQA 1003
Query: 614 MGGDIEIVDKENGERGTCFRFNVFLAI 640
M G I+ V+ + G RGTCF + L +
Sbjct: 1004 MQGRIQ-VESQLG-RGTCFGVTLPLPL 1028
>gi|71064923|ref|YP_263650.1| signal transduction histidine kinase sensor [Psychrobacter arcticus
273-4]
gi|71037908|gb|AAZ18216.1| putative signal transduction histidine kinase sensor [Psychrobacter
arcticus 273-4]
Length = 1135
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 142/304 (46%), Gaps = 57/304 (18%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R A EM + I+ A A S KS AN SH++R L I G I L
Sbjct: 280 RLAFDEMEMQNISIR--NARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLLARHGE 337
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
E + ++ + + LL L+N +LD SK+EAGK+ L +FD+ + + DVVD+ PV
Sbjct: 338 LNPEQDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPV 397
Query: 461 AMRKGVEV-VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
+ KG+ + VL +D + +V GD ++LKQ+L+N++ NA+KFT G + VR
Sbjct: 398 SAEKGLRMAVLFYNDVPM----RVNGDALRLKQVLTNIVGNAIKFTDSGDVVVRV----- 448
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
SL + +L V D+GKGI
Sbjct: 449 ------SLDDYQDNYL--------------------------------MISVQDSGKGIS 470
Query: 580 KEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVD--KEN-GERGTCF 632
+K +F+++ Q + GGTGLGL I + L RLMGGDI D +EN +G F
Sbjct: 471 LSDQKMLFQSFSQGDPSITRQYGGTGLGLVISKQLTRLMGGDIGFYDNMQENISNQGATF 530
Query: 633 RFNV 636
F +
Sbjct: 531 WFRM 534
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
A H D I MD +MP M+G+EA R+IR+ E + HIPIIALTAH +E DK I +G
Sbjct: 785 AQHKNSIDLIFMDIQMPRMSGHEAARQIRKIEAADS-HIPIIALTAHGLADERDKLIASG 843
Query: 1110 MDVHLGKPLNRDHLMEAIK 1128
++ ++GKP+++ L++ ++
Sbjct: 844 INDYVGKPISQPQLLQVLQ 862
>gi|300867491|ref|ZP_07112142.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300334485|emb|CBN57310.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1231
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/414 (28%), Positives = 188/414 (45%), Gaps = 69/414 (16%)
Query: 252 TKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVH 311
TKT + P+++ + G K +Y++ + ++ AG + Y + L+
Sbjct: 616 TKTLSITGEPIEDTYLQANQGGFYQQKTYYRSVPNIYQ-AGFDTCY---------IDLLE 665
Query: 312 RTSKRALILLIVMTVGVLISML-TFVFKSARAARK-EMHLCASL-------IKQMEATQQ 362
+ RA I+ + L +L T+ R R+ E+ + + I+Q E Q
Sbjct: 666 QFQARAYIITPIFCSSKLWGLLATYQNSDIREWREAEIKMVVQIGAQLGVAIQQAELLAQ 725
Query: 363 AERKSMN--------------KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN 408
++++ KS AN SH++R L I G +L + +E
Sbjct: 726 TQKQAAELKIAKESADAANSAKSEFLANMSHELRTPLNAILGFSQLMNRDRSLSTEYIQY 785
Query: 409 LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
L +N LL L+N IL+ SK+EAG+M L E +FD+ LL+++ D+ A K +++
Sbjct: 786 LNIINRSGEHLLELINDILEMSKIEAGRMVLYENEFDLYNLLDNLEDMLQLKAQSKALKL 845
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
D +V KF VK D+ KL+QIL NL+ NA+KFT +G++ +R V N
Sbjct: 846 TFQ-RDKTVPKF--VKTDQSKLRQILINLIGNALKFTEKGNVILRVKVAGRERSNNEQKE 902
Query: 529 SSR--HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTV 586
++ F S F + FEV+DTG GI E +
Sbjct: 903 NTNIPSSFFLLPSSFFLQ------------------------FEVEDTGPGIAPEDFDKL 938
Query: 587 FENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
FE + Q +K G+ GTGLGL I Q V+LMGG+I V + G+ G F F++
Sbjct: 939 FEAFGQTATGLKSGQ-GTGLGLPISQKFVQLMGGEI-TVSSQLGQ-GAKFTFDI 989
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D+ R + + LG V ENG+ + L S PH+ I
Sbjct: 1020 RILIVEDNPANRLLLVRLVSSLGFEVREAENGQQGIALWESW--------EPHL-----I 1066
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+++GYEAT+KIR + K + IIALTA + EE + AG D + KP
Sbjct: 1067 WMDMRMPVIDGYEATKKIRAQSKSRET--VIIALTASVFEEEQQLILSAGCDDMVRKPFK 1124
Query: 1120 RDHLM 1124
L+
Sbjct: 1125 EQELL 1129
>gi|359452292|ref|ZP_09241643.1| hypothetical protein P20495_0382 [Pseudoalteromonas sp. BSi20495]
gi|358050636|dbj|GAA77892.1| hypothetical protein P20495_0382 [Pseudoalteromonas sp. BSi20495]
Length = 1587
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 164/353 (46%), Gaps = 75/353 (21%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE ++ KS A SH+IR + G+ G++EL +E +ET + A+
Sbjct: 1060 ALVKAEDAAVAKSQFLATMSHEIRTPMNGVLGMLELIELE-NLSKPIETKVGIAKTSAHS 1118
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LLG++N ILD SK EAGK++L +F+ G+L+ +V A KG+E++LD L
Sbjct: 1119 LLGVINDILDFSKAEAGKIELESINFNAGDLIGEVAAAQAFTAQDKGIEIILDL---VAL 1175
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+ S++ GD +++QIL+NLLSNAVKFTS+G + V A + K
Sbjct: 1176 EPSQLCGDPGRIRQILTNLLSNAVKFTSKGEVVVSAQIDKV------------------- 1216
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
E + +V D+G GI ++K+ +F + QV
Sbjct: 1217 -----------------------EQGLVLQIKVKDSGIGINEQKQHQLFSPFSQVDASTT 1253
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
GGTGLGL I + L LMGG+I + E G F V + + TQ E+
Sbjct: 1254 REYGGTGLGLAICKQLCELMGGEISL----KSEAGQGSEFTVTIQV---------TQSEQ 1300
Query: 655 ELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVL 707
+ + +Q +N +K S L + N ++S H G+HV L
Sbjct: 1301 K---------ERYIQKLN--IKGLS-VLVVDDNETNRIVISQQLEHWGAHVAL 1341
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 74/130 (56%), Gaps = 11/130 (8%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D+ + ++V+ + L+ L + ENG+ A+ ++ + G + + +
Sbjct: 1465 QILLVEDNPINQQVSTLMLKKLNCNITLAENGQLAIDILNTH-------GQGY---FKAV 1514
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQ-VHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMDC+MP+M+G++AT+ IR ++ I IIALTA+ + + AGMD +L KP+
Sbjct: 1515 LMDCQMPVMDGFDATKAIRNGLAGDKHKDIKIIALTANAMDADKQRCFAAGMDDYLSKPI 1574
Query: 1119 NRDHLMEAIK 1128
D L + ++
Sbjct: 1575 QLDFLKDKLE 1584
Score = 46.6 bits (109), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 970 SGEGSSRYKQTEI-EEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEAC 1028
+G+GS ++ + E ER + ++G +LV DD+ R V L H GA V
Sbjct: 1283 AGQGSEFTVTIQVTQSEQKERYIQKLNIKGLSVLVVDDNETNRIVISQQLEHWGAHVALA 1342
Query: 1029 ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHI 1088
+ AL + S ++ + YD ++D +MP M+G + ++ + ++
Sbjct: 1343 CDAYDALAMCESRISSNLKM-------YDIAVLDMQMPGMDGIGLCKALKANDDFK--NM 1393
Query: 1089 PIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
P++ +T+ E A + G + KP+ L+ A+
Sbjct: 1394 PLVMMTSIAGMEGAQRYSSIGFQAYFPKPVTTADLISAL 1432
>gi|414069249|ref|ZP_11405244.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas sp. Bsw20308]
gi|410808364|gb|EKS14335.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas sp. Bsw20308]
Length = 1587
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 164/353 (46%), Gaps = 75/353 (21%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE ++ KS A SH+IR + G+ G++EL +E +ET + A+
Sbjct: 1060 ALVKAEDAAVAKSQFLATMSHEIRTPMNGVLGMLELIELE-NLSKPIETKVGIAKTSAHS 1118
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LLG++N ILD SK EAGK++L +F+ G+L+ +V A KG+E++LD L
Sbjct: 1119 LLGVINDILDFSKAEAGKIELESINFNAGDLIGEVAAAQAFTAQDKGIEIILDL---VAL 1175
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+ S++ GD +++QIL+NLLSNAVKFTS+G + V A + K
Sbjct: 1176 EPSQLCGDPGRIRQILTNLLSNAVKFTSKGEVVVSAQIDKV------------------- 1216
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
E + +V D+G GI ++K+ +F + QV
Sbjct: 1217 -----------------------EQGLVLQIKVKDSGIGINEQKQHQLFSPFSQVDASTT 1253
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
GGTGLGL I + L LMGG+I + E G F V + + TQ E+
Sbjct: 1254 REYGGTGLGLAICKQLCELMGGEISL----KSEAGQGSEFTVTIQV---------TQSEQ 1300
Query: 655 ELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVL 707
+ + +Q +N +K S L + N ++S H G+HV L
Sbjct: 1301 K---------ERYIQKLN--IKGLS-VLVVDDNETNRIVISQQLEHWGAHVAL 1341
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 74/130 (56%), Gaps = 11/130 (8%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D+ + ++V+ + L+ L + ENG+ A+ ++ + G + + +
Sbjct: 1465 QILLVEDNPINQQVSTLMLKKLNCNITLAENGQLAIDILNTH-------GQGY---FKAV 1514
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQ-VHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMDC+MP+M+G++AT+ IR ++ I IIALTA+ + + AGMD +L KP+
Sbjct: 1515 LMDCQMPVMDGFDATKAIRNGLAGDKHKDIKIIALTANAMDADKQRCFAAGMDDYLSKPI 1574
Query: 1119 NRDHLMEAIK 1128
D L + ++
Sbjct: 1575 QLDFLKDKLE 1584
Score = 47.0 bits (110), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 970 SGEGSSRYKQTEI-EEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEAC 1028
+G+GS ++ + E ER + ++G +LV DD+ R V L H GA V
Sbjct: 1283 AGQGSEFTVTIQVTQSEQKERYIQKLNIKGLSVLVVDDNETNRIVISQQLEHWGAHVALA 1342
Query: 1029 ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHI 1088
+ AL + S ++ + YD ++D +MP M+G + ++ + ++
Sbjct: 1343 CDAYDALAMCESRISSNLKM-------YDIAVLDMQMPGMDGIGLCKALKANDDFK--NM 1393
Query: 1089 PIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
P++ +T+ E A + G + KP+ L+ A+
Sbjct: 1394 PLVMMTSIAGMEGAQRYSSIGFQAYFPKPVTTADLISAL 1432
>gi|160893712|ref|ZP_02074496.1| hypothetical protein CLOL250_01266 [Clostridium sp. L2-50]
gi|156864697|gb|EDO58128.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Clostridium sp. L2-50]
Length = 583
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 141/275 (51%), Gaps = 49/275 (17%)
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVE 433
AN SH+IR + GI G+++L + ++ NL CA+ LL L+N ILD SK+E
Sbjct: 208 LANMSHEIRTPINGILGMLQLTLMADDLQADYRDNLVTAKNCADTLLRLINDILDISKLE 267
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQI 493
AGK ++ EE FD+ + +E+ V P+A KG++ LD S G+ + VKGD +++Q+
Sbjct: 268 AGKYKIKEETFDIKQAIEETVAAQVPLANNKGLQ--LDCSFGNNIP-KLVKGDGQRIQQV 324
Query: 494 LSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLE 553
L+ LLSNA+KFTSEG + V K A D+E
Sbjct: 325 LNCLLSNAIKFTSEGSVRV---------------------------------KIASMDME 351
Query: 554 AVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQS 609
EN ++ V DTG GI + +F + QV + GG+GLGL I +
Sbjct: 352 G-------ENKVKIRMAVADTGIGISEANMSKLFIRFSQVDSSDTRRYGGSGLGLVITKQ 404
Query: 610 LVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
+V LMGG+I++ KE + G+ F V + + +AS
Sbjct: 405 IVELMGGNIQVQSKE--DIGSTFIVEVPMKVVKAS 437
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 75/133 (56%), Gaps = 15/133 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILVA+D + ++V L G + + ENG+ A++L + + YD
Sbjct: 462 RILVAEDEPVNQQVIGKLLGMAGFSYDIAENGQKAVELFKQKI-------------YDAA 508
Query: 1060 LMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
L D +MP+M+G AT++IRE E+K + +PIIA+TA + ++ +E +D ++ KP
Sbjct: 509 LFDVQMPVMDGIAATQEIREIEQKEKRKRLPIIAVTARAMFGDKERILENKLDDYIAKPY 568
Query: 1119 NRDHLMEAI-KYL 1130
N + ++E + KY+
Sbjct: 569 NLNDVVETLNKYI 581
>gi|149370174|ref|ZP_01890025.1| Signal transduction histidine kinase-like protein [unidentified
eubacterium SCB49]
gi|149356665|gb|EDM45221.1| Signal transduction histidine kinase-like protein [unidentified
eubacterium SCB49]
Length = 728
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 161/319 (50%), Gaps = 53/319 (16%)
Query: 324 MTVGVLISMLTF-VFKSARAARKEMHLCASLIKQMEATQQ-AERKSMNKSLAFANASHDI 381
+T+ V++S+LT ++K K +L +++A ++ AE+ S+ K+ + SH++
Sbjct: 306 VTLIVILSLLTLSLYKINNLKAKANNLLIQKNSELQAAKEKAEKASVAKAQFLSTVSHEL 365
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE 441
R L +TGL L ++ P + + +L + LL L+N++LD +K+EA K ++
Sbjct: 366 RTPLYAVTGLTHLL-LDENPEPKQKEHLDSLKFSGEYLLSLINNLLDLNKLEAKKTEVEY 424
Query: 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNA 501
F++ + + DV+D A K +V LD + K+ GD +KL QIL NL+ N+
Sbjct: 425 LTFNLEKQIRDVIDALKNSAQDKNNKVTLDFDNELP---DKIVGDPIKLSQILMNLIGNS 481
Query: 502 VKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRD 561
+KFT G +++R VKK + D
Sbjct: 482 LKFTQNGFVTIR--VKKNN---------------------------------------ED 500
Query: 562 ENAMEFTFEVDDTGKGIPKEKRKTVFENY----VQVKEGEGGTGLGLGIVQSLVRLMGGD 617
+ + FE++D G GI K+KR T+FE++ +QV GGTGLGL IV+++++LM D
Sbjct: 501 DKNINIKFEIEDNGIGISKKKRSTIFESFSQGSLQVNRKYGGTGLGLSIVKNILKLMNSD 560
Query: 618 IEIVDKENGERGTCFRFNV 636
I + + +G+ F FN+
Sbjct: 561 IHL--ESTLGQGSKFWFNI 577
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 25/136 (18%)
Query: 996 LRGKKILVADDS----MMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
+ KKILV +D+ M+ R++ E +H + +NG A++L+
Sbjct: 603 FKNKKILVVEDNKINQMITRKILE---KH-HVNCQIIDNGVDAIKLIEKN---------- 648
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
++ +LMD MP ++G E T+ +R+ +K+ PI+ALTA + E ++ AG +
Sbjct: 649 ---SFEVVLMDIHMPGISGIETTQLVRKFDKKT----PILALTAVTADENKEEFYNAGFN 701
Query: 1112 VHLGKPLNRDHLMEAI 1127
+ KP + E I
Sbjct: 702 DIIPKPFTTELFFEKI 717
>gi|410726666|ref|ZP_11364902.1| signal transduction histidine kinase [Clostridium sp. Maddingley
MBC34-26]
gi|410600316|gb|EKQ54846.1| signal transduction histidine kinase [Clostridium sp. Maddingley
MBC34-26]
Length = 877
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 153/318 (48%), Gaps = 55/318 (17%)
Query: 345 KEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE 404
KE++L A + + K+ KS A+ SH+IR L I G E E SE
Sbjct: 269 KELYLFAEKFNDLYRSLLEANKA--KSQFLASMSHEIRTPLNIIMGY-EYLLEETSLNSE 325
Query: 405 LETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK 464
++ + A LL ++N+ILD SK+E KMQL FD+ E LE+ +F A+ K
Sbjct: 326 QRQYIKNSKLAAKGLLQIINNILDFSKLENNKMQLENISFDLDEFLEEENQIFSYTALNK 385
Query: 465 GVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN 524
G+ + D D V ++ VKGD +KL Q+L+N++SNA+KFTS+G ++V+
Sbjct: 386 GLYLKFDI-DKDVPRY--VKGDSLKLNQVLNNIISNAIKFTSKGGVTVK----------- 431
Query: 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRK 584
V++A + N ++ TFE++DTG GI +E +K
Sbjct: 432 ------------------------------VSSATMEVNKVKLTFEIEDTGIGILEEDKK 461
Query: 585 TVFENY----VQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
+FE + V + GGTGLGL I + ++ L G I VD G +G+ F V I
Sbjct: 462 RIFEAFEQSDVSITRKYGGTGLGLSICKKIIDLFNGKI-TVDSVYG-KGSKFTIEVNFEI 519
Query: 641 --REASANDNNTQGEKEL 656
+EA D EK +
Sbjct: 520 GEKEAVLEDKKINSEKNM 537
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
S+ +GK+IL+ +D+ + + V + LR LG V ++G+ A++L R
Sbjct: 533 SEKNMKFKGKQILLVEDNEINQAVEKEMLRSLGLRVTVAKSGQKAIELSRK--------- 583
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEA 1108
+ +D I MD M M+GY+ R IR+ EE R IIALTA + EA
Sbjct: 584 ----IKFDVIFMDIRMSGMDGYKTARAIRKLEENR---FTYIIALTADAENNSVKRAKEA 636
Query: 1109 GMDVHLGKPLNRDHLMEAIK 1128
GMD + KPLN DH++ ++
Sbjct: 637 GMDDFITKPLNLDHIIRILR 656
>gi|296272696|ref|YP_003655327.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
7299]
gi|296096870|gb|ADG92820.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
7299]
Length = 1183
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 168/345 (48%), Gaps = 57/345 (16%)
Query: 323 VMTVGVLISMLTFVFKSARAARKEMHL-CASLIKQME-ATQQAERKSMNKSLAFANASHD 380
++ + L+ + K ++ +K + + + K++E A +AE + KS AN SH+
Sbjct: 438 ILEIDSLLMNFNKMIKEIKSNKKNLEIEVDNRTKELEIAKIKAEESTKAKSEFLANMSHE 497
Query: 381 IRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLI 440
IR + GI G+ L ++ + + + ++++CA +LL +LN ILD SK+EAGK+ L
Sbjct: 498 IRTPMNGIIGMSHLA-LQTRLNDKQKNYIEKIDICAKNLLNILNDILDFSKIEAGKLNLE 556
Query: 441 EEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSN 500
+ +F++ E +E++V++ K +E+V+ F GD ++L QIL+NLLSN
Sbjct: 557 KVEFNLFETIENIVNIIDFSVYEKNLELVVSYGTDVGKNFY---GDNLRLAQILTNLLSN 613
Query: 501 AVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQR 560
A+KFT++G I V ++ I +N Q
Sbjct: 614 AIKFTNDGQIGV---------------------YITKID---------------INRYQ- 636
Query: 561 DENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGG 616
FE+ DTG G+ +E++ +F+++ Q G GGTGLGL I + L+ LM G
Sbjct: 637 --------FEIKDTGIGLTEEQQTKLFQSFSQADGGTTRKYGGTGLGLTISKQLIELMNG 688
Query: 617 DIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDS 661
I + + N G+ F F + L + N Q +K L D+
Sbjct: 689 KIWVESQINV--GSRFIFQIDLEDKNIDKKYNIFQNKKVLVVDDN 731
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 17/158 (10%)
Query: 975 SRYKQTEIEEEDGERSQAQK-PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEA 1033
S +K+ I E+ + +Q + G IL+ +D+ + + + L + + NG+
Sbjct: 845 SDFKRKNINEKIIDEAQLKTISFEGNNILLVEDNKVNQEIIIGLLENSKINFDIANNGKE 904
Query: 1034 ALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIAL 1093
AL V+ N Y ILMD +MPIM+GYEATR+I K+ +PIIAL
Sbjct: 905 ALLKVKENPN-----------KYHLILMDIQMPIMDGYEATREI----KKINNEVPIIAL 949
Query: 1094 TAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
TA++ ++++KT GM HL KP+ D L + KYL
Sbjct: 950 TANVMHKDSEKTKAVGMQEHLNKPIKVDKLYSTLSKYL 987
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 981 EIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRS 1040
+I+ ED + + KK+LV DD+ + E L+ V ++G+ A+ +++
Sbjct: 705 QIDLEDKNIDKKYNIFQNKKVLVVDDNKTWHEILESILKMFNIEVYCVDSGKEAITHIKT 764
Query: 1041 GLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP--IIALTAHIS 1098
+ YD ILMD MP ++G E T+KI EE K + P II +++ +
Sbjct: 765 TN-----------INYDLILMDWNMPELDGIETTKKINEEYKDKK---PPTIIMVSSFMQ 810
Query: 1099 GEEADKTIEAGMDVHLGKPLN 1119
+ EAG+++ L KP+N
Sbjct: 811 ESIFELAKEAGIELFLNKPIN 831
>gi|357404372|ref|YP_004916296.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
gi|351717037|emb|CCE22702.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
Length = 1528
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 151/317 (47%), Gaps = 57/317 (17%)
Query: 336 VFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELC 395
VF ARKE A+LI EA Q AE + KS AN SH+IR + I GL +L
Sbjct: 776 VFLRDIGARKETE--AALI---EAKQSAETANRAKSAFLANMSHEIRTPMNAILGLTQLV 830
Query: 396 YVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVD 455
+E + + L++++ + LL +LN +LD SK+EAG++++ F V +L V D
Sbjct: 831 -LETDLNARQKDFLQKVHASSKALLSILNDVLDYSKIEAGRLEIDRVSFRVESVLTSVAD 889
Query: 456 LFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRAC 515
LF KG+E+ + L + GD ++L Q+L+NL+ NA+KFT+EG + ++
Sbjct: 890 LFAARIEEKGLELFFEI---EALANRTLIGDPLRLTQVLNNLVGNAIKFTNEGEVHIK-- 944
Query: 516 VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTG 575
V A ++ ++++ F V DTG
Sbjct: 945 ---------------------------------------VEAIEQSDDSLLLQFSVRDTG 965
Query: 576 KGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTC 631
G+ +EK + +F+ + Q + GGTGLGL I +V LMGG I E +G
Sbjct: 966 IGLSQEKAELLFQPFTQADSSITRQFGGTGLGLAICSKIVALMGGTIGAAGVEG--KGAV 1023
Query: 632 FRFNVFLAIREASANDN 648
F F V + I EA A N
Sbjct: 1024 FTFTVRVGI-EAEAPQN 1039
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 15/124 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G KILV +D+ + + V L++ GA+V ENG AL + +
Sbjct: 1189 LDGVKILVVEDNALNQEVVVEILQNRGASVTVAENGRVALDKLEQEI------------- 1235
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D +LMD +MP M+G+EATR+I+ + +P++ ++A + EE + AG D +
Sbjct: 1236 FDIVLMDLQMPEMDGFEATRRIKAIPDYHA--LPVVVMSAAVMPEERARCRLAGADDFVA 1293
Query: 1116 KPLN 1119
KP++
Sbjct: 1294 KPVD 1297
Score = 43.9 bits (102), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAAL-QLVRSGLNDQRDLGAPHIL 1054
+R +++LV DD R + E L G + ++GE AL Q+ R+ +Q++
Sbjct: 1045 IRAQRVLVVDDQSTSRLILECLLTEWGVICDTSDSGEDALRQIYRA---EQKN------C 1095
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP--IIALTAHISGEEADKTIEAGMDV 1112
P+ +L+D MP M+G E ++ + ++ + P +I +TA+ + + D
Sbjct: 1096 PFSTVLLDWRMPGMSGAEVAERLENDCRKGLLKHPLTVIMITAYDKEQLLAQADRIHFDK 1155
Query: 1113 HLGKPLNRDHLMEAI 1127
L KP+ L E +
Sbjct: 1156 ILTKPVTPSVLYETL 1170
>gi|117926677|ref|YP_867294.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610433|gb|ABK45888.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 874
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 151/308 (49%), Gaps = 53/308 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA +QAE +M KS A SH++R + GI G++ L G + E L A
Sbjct: 364 IEAKEQAEAANMAKSRFLAVMSHEVRTPMNGILGMLGLLNDRRLDGQQQEW-LATAQESA 422
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+L LLN ILD SK+EAG ++L + F ++L+ V DLF P A KG+ + L+ G+
Sbjct: 423 ESMLTLLNDILDFSKIEAGHLELEQSAFSPEQILKGVHDLFLPRATAKGITLELE--QGA 480
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
L + V+GD +L+Q+L NL+SN +KFT +G +++R
Sbjct: 481 NLP-AWVQGDPGRLRQVLMNLVSNGIKFTHQGGVTMR----------------------- 516
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
V + E+++ FEV D+G GIP ++ +F+ + Q+
Sbjct: 517 ------------------VAQQAKREDSLLLQFEVQDSGIGIPPQQLTQLFQPFNQLDPS 558
Query: 597 ----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND--NNT 650
GG+GLGL I + LV LMGG+I + +G G+ F F A ++ +N+
Sbjct: 559 YSRKYGGSGLGLAICRHLVDLMGGEIRLESPPSG--GSRFTFTARFGYAHAPQDEVLDNS 616
Query: 651 QGEKELAG 658
+ E +L G
Sbjct: 617 EQEVQLHG 624
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 983 EEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ-LVRSG 1041
++E + S+ + L G ++L+A+DS + VA L +G V+ NG L+ L R+
Sbjct: 609 QDEVLDNSEQEVQLHGVRVLLAEDSPTNQMVAVAMLARVGCHVDVAVNGLEVLEALTRA- 667
Query: 1042 LNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR--EEEKRNQVHIPIIALTAHISG 1099
PYD ILMD MP M+G++A +IR R+ IPIIALTA+
Sbjct: 668 -------------PYDLILMDLAMPEMDGWQAIARIRGMNAPLRD---IPIIALTANAYP 711
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
E + + AG + KP+ R+ L+ I L
Sbjct: 712 EVRAQCLAAGAQDFITKPIQRNILLNGILAL 742
>gi|406596490|ref|YP_006747620.1| sensor protein [Alteromonas macleodii ATCC 27126]
gi|406373811|gb|AFS37066.1| putative sensor protein [Alteromonas macleodii ATCC 27126]
Length = 1260
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 141/293 (48%), Gaps = 55/293 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE-LETNLRQMNVC 415
+EATQ+A + S KS +N SH++R L G+ G L ++ P +E E + M +
Sbjct: 501 VEATQEARKASSVKSSFISNISHEMRTPLNGVVG--SLSLLKCQPLNEKAEQLVSMMEIS 558
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
N+L L+N +LD SK+EAGK+ + + FD L+E + +F A KG+++++D +
Sbjct: 559 CNNLSVLINDVLDLSKIEAGKLDINNQYFDPLALIESIAKVFAVKAASKGLQLLVDTTG- 617
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
L ++ D ++ QILSNLL+NA+KFT EGHI ++A +
Sbjct: 618 --LPPVEINSDPHRINQILSNLLNNAIKFTEEGHIKLQASL------------------- 656
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+ D + F V DTG GI +E + +F + Q
Sbjct: 657 ----------------------SDVDAGTQQLHFSVCDTGVGIAQENQPKLFTAFTQADA 694
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
V GGTGLGL I + L +LMGGDI N E F+ F+ + E +
Sbjct: 695 SVATQYGGTGLGLSICKQLSQLMGGDITF----NSEVDIGSTFSFFVTLPETT 743
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 17/164 (10%)
Query: 969 SSGEGSSRYKQTEIEEEDG--ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVE 1026
SSG+G K +I +++G + ++ Q + +L+ DD+M+ R VA+ L L +
Sbjct: 893 SSGKG----KAEDISDDEGAADDTEQQLSIENANLLIVDDNMINREVAKGVLESLPVKLF 948
Query: 1027 ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV 1086
C +GE + + + R + + ILMDC+MP MNGY+ATR IR E K +
Sbjct: 949 TCSDGEEVVAFLTKCESKGRRIHS--------ILMDCQMPNMNGYDATRAIR-EGKAGAM 999
Query: 1087 H--IPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
H +PIIA+TA+ E +K +EAGMD KP+ D L+ +K
Sbjct: 1000 HKDVPIIAMTANAMLGEKEKCLEAGMDDFATKPVMADVLIPKVK 1043
>gi|452852670|ref|YP_007494354.1| PAS/PAC sensor hybrid histidine kinase (fragment) [Desulfovibrio
piezophilus]
gi|451896324|emb|CCH49203.1| PAS/PAC sensor hybrid histidine kinase (fragment) [Desulfovibrio
piezophilus]
Length = 1158
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 145/304 (47%), Gaps = 56/304 (18%)
Query: 347 MHLCASL--IKQME-----ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEA 399
MH+ A + +K ME A + + S K+ AN SH+IR L G+ G++++ +
Sbjct: 756 MHMAADITELKNMERELKLAMAETKEASNAKNEFLANMSHEIRTPLNGLLGMLQILQLTK 815
Query: 400 GPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHP 459
G E + L +LL +LN ILD +K+E+GK+ E D ++GE+L VV +F
Sbjct: 816 LKG-EQQDYLNTALDSGRNLLQVLNDILDLTKIESGKLDFEEYDMELGEVLNSVVQVFRH 874
Query: 460 VAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
+A ++GV + + + FS KG +L+QIL NL+ NAVKFT G ++V+A
Sbjct: 875 MAEQRGVSMTWEIDETLQRHFSADKG---RLRQILFNLVGNAVKFTESGSVTVKAY---- 927
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
+S +F D+ + F V DTG GIP
Sbjct: 928 -----------------PLSTVF------------------DDGRTQLYFSVADTGIGIP 952
Query: 580 KEKRKTVFENYVQVK----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
+K +F+ + QV GTGLGLGIV LV LMGG I + + +GT F
Sbjct: 953 DDKIDQIFDPFTQVDGSFSRKYQGTGLGLGIVHRLVTLMGGSIAVSSQLG--KGTTIIFT 1010
Query: 636 VFLA 639
+ +
Sbjct: 1011 IMVG 1014
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 73/142 (51%), Gaps = 21/142 (14%)
Query: 991 QAQKPL-----RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQ 1045
+Q PL R IL+A+D + R VA+ L LG TV ENGE A+ L
Sbjct: 1021 HSQPPLTEIESRPLSILLAEDEHVNRLVAKRLLSKLGHTVTTVENGEDAIAL-------- 1072
Query: 1046 RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT 1105
LG +D +L D +MP M+G E TR IR + K + IP+IALTAH + +
Sbjct: 1073 --LGER---SFDLLLSDIQMPGMDGMETTRIIRNKLK---LDIPVIALTAHAMKGDRGRF 1124
Query: 1106 IEAGMDVHLGKPLNRDHLMEAI 1127
I+AGMD ++ KP L E +
Sbjct: 1125 IKAGMDGYIAKPFELTELKEEL 1146
>gi|428213643|ref|YP_007086787.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002024|gb|AFY82867.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1201
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/361 (29%), Positives = 158/361 (43%), Gaps = 73/361 (20%)
Query: 309 LVHRTS-KRALILLIVMTV-----GVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQ 362
++HRTS R + +L+ G ++ +++ ++ R E L +L
Sbjct: 890 VIHRTSGDRTIPVLLSADAIKDPSGTIVGLISISTDISQRVRAEQDLKKAL-------HA 942
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET--NLRQMNVCANDLL 420
AE S +KS AN SH++R L I G E+ E E E +L ++ LL
Sbjct: 943 AEAASRSKSTFLANMSHELRTPLNAIIGYSEILTEEMEDAGEQEAIADLTKIRTAGKHLL 1002
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG--VEVVLDPSDGSVL 478
L+N ILD SK+EAG+M L E FD+ L+ +V+ P+ + +E+ DPS G
Sbjct: 1003 ALINDILDISKIEAGRMTLYLEAFDITLLISEVISTVEPLIEKNSNHLEINCDPSVGI-- 1060
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISV-------RACVKKPSAIGNPSLSSSR 531
+ GD K++QIL NLLSNA KFT G I++ R V+ P P
Sbjct: 1061 ----MTGDLTKVRQILFNLLSNAAKFTENGTIALTVTPREAREWVQHPLTPDTP------ 1110
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
Q + +E F V DTG GI E+ +FE +
Sbjct: 1111 ---------------------------QEQTSGIE--FRVTDTGIGISPEQLINIFEAFS 1141
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
Q GGTGLGL I Q ++MGG+I+I E G F ++L I+ +
Sbjct: 1142 QADASTTRKYGGTGLGLAISQRFCKMMGGEIKI----ESEAGKGSTFTLWLPIKMNPTAE 1197
Query: 648 N 648
N
Sbjct: 1198 N 1198
>gi|224101927|ref|XP_002312478.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222852298|gb|EEE89845.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1007
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 159/337 (47%), Gaps = 44/337 (13%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E +AE + KS A SH+IR + G+ G++ L ++ S + VC
Sbjct: 371 ELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLALL-LDTDLSSTQRDYAQTAQVCGK 429
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
L+ L+N +LD +K+EAGK++L FD+ +L+DV+ LF + KG+E+ + SD
Sbjct: 430 ALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVP 489
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRA-CVKKPSAIGNPSLSSSRHGFLQ 536
V GD + +QI++NL+ N+VKFT GHI V+ + AI + + + +G
Sbjct: 490 ---EIVVGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLYENAKAITDTKVDTCLNG--G 544
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAM---------EFTFE----------------- 570
S + + L AA D+N+ +F F+
Sbjct: 545 SNESVLTSGSQKFKTLSGCEAAD-DQNSWDVFKHFSDEDFRFDASINVMTNNEASEDVGL 603
Query: 571 ---VDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDK 623
V+DTG GIP + + VF +VQ GGTG+GL I + LV LMGG I + +
Sbjct: 604 MVCVEDTGIGIPLKAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQINFISR 663
Query: 624 ENGERGTCFRFN-VFLAIREASANDNNTQGEKELAGG 659
E G+ F F VF ++ + N+ + +EL G
Sbjct: 664 P--EVGSTFSFTAVFGTCKKNTFNNMEKRNAEELPSG 698
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 30/153 (19%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q L GK+ILV DD+ + RRVA L+ GA E E+G+ AL+L L PH
Sbjct: 855 QSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKL----------LQPPH 904
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEE------------------KRNQVHIPIIALT 1094
YD MD +MP M+G+EATR+IR+ E ++ Q HIPI+A+T
Sbjct: 905 T--YDACFMDIQMPEMDGFEATRRIRQMESQANEQMNGESMVEEGTARKVQWHIPILAMT 962
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
A + D+ +++GMD ++ KP ++L +A+
Sbjct: 963 ADVIHATHDECLKSGMDGYVSKPFEEENLYQAV 995
>gi|256423935|ref|YP_003124588.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
2588]
gi|256038843|gb|ACU62387.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
2588]
Length = 1016
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 169/348 (48%), Gaps = 57/348 (16%)
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSI 426
+M KS AN SH+IR L G+ G EL ++ L +N AN LL ++N I
Sbjct: 376 NMAKSEFLANMSHEIRTPLNGVIGFTELV-LKTDLNETQHQYLSIVNQSANALLSIINDI 434
Query: 427 LDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGD 486
LD SK+E+GK++L + +D+ E V D+ A KG+E++L+ S + +F+ D
Sbjct: 435 LDFSKIESGKLELDIDKYDLYEFSSQVSDIVSYQAQHKGLEMLLNVS-TQLPRFAWF--D 491
Query: 487 RVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNK 546
V+LKQIL NLL NAVKFTS G I ++ +P F ++
Sbjct: 492 EVRLKQILINLLGNAVKFTSNGEIELKV---------HP--------------LEFLEDD 528
Query: 547 KARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGL 602
KA+ FEV DTG GI EK+ +FE + Q + GGTGL
Sbjct: 529 KAK-----------------IRFEVRDTGIGIKPEKQLKIFEAFRQEDASTTKKYGGTGL 571
Query: 603 GLGIVQSLVRLMGGDIEIVDKENG-ERGTCFRFNVFLAIREASA-NDNNTQGEKELAGGD 660
GL I L+ LMG ++ I E+G +G+ F F++ L EA A N +N + K++ D
Sbjct: 572 GLTISNKLLALMGSELHI---ESGVSQGSTFYFDIVLTTVEAPAENQDNLERIKDVLIVD 628
Query: 661 SAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLL 708
+ + L +K S + R+ L +LS ++G ++L+
Sbjct: 629 DNDNNRHILKEMLQMKGISCT-EARSGFDALELLSA---NDGYDIILM 672
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 20/145 (13%)
Query: 988 ERSQAQKPLRGK-KILVADDS---MMLRRVAEINLRHLGATVEACENGEAALQLVRSGLN 1043
+ QA++ + G+ IL+ +D+ M+L + H EA ++G A+++ R+ L
Sbjct: 753 QEQQAEQWIGGRLNILIVEDNPINMLLATTVVKRIAHDARIYEA-QDGIDAIRICRAQL- 810
Query: 1044 DQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD 1103
P D ILMD +MPIMNGYEAT +IR E + IPIIALTA E +
Sbjct: 811 -----------P-DLILMDIQMPIMNGYEATGRIR--EIKGGQRIPIIALTAGNLKGERE 856
Query: 1104 KTIEAGMDVHLGKPLNRDHLMEAIK 1128
K +EAGM+ + KPL ++ LME +
Sbjct: 857 KCMEAGMNDFISKPLIQEKLMELFR 881
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R K +L+ DD+ R + + L+ G + +G AL+L+ + ND Y
Sbjct: 620 RIKDVLIVDDNDNNRHILKEMLQMKGISCTEARSGFDALELLSA--ND----------GY 667
Query: 1057 DYILMDCEMPIMNGYEATRKIR 1078
D ILMD MP M+G E RK+R
Sbjct: 668 DIILMDYHMPYMDGLETVRKMR 689
>gi|374815158|ref|ZP_09718895.1| putative multi-sensor hybrid histidine kinase [Treponema primitia
ZAS-1]
Length = 1516
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 162/337 (48%), Gaps = 64/337 (18%)
Query: 307 VSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQME-ATQQAER 365
++++ R + LI + V I M F K+A A R +M + ++E A +QAE+
Sbjct: 751 LAILEHLPVRIFLALIAAAILVTIGMAIFQVKNA-AERIQM------VNELENAMRQAEQ 803
Query: 366 KSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNS 425
+ +KS AN SH+IR + I G+ EL E G ++ + + +LL ++N
Sbjct: 804 ANKSKSEFLANMSHEIRTPMNAIIGISELVLREETAG-RVKDYINDIKQAGYNLLSIIND 862
Query: 426 ILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV--EVVLDPSDGSVLKFSKV 483
ILD SK+EAGK+Q++ + + LL DV+ + K + V +DP L +
Sbjct: 863 ILDFSKIEAGKIQILSAPYRLSSLLNDVITIIRIRVSEKPIIFMVNVDP-----LLPDNL 917
Query: 484 KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFY 543
GD +++QIL NLLSNA K+T EGHI ++S R+G L
Sbjct: 918 TGDEARMRQILLNLLSNAAKYTKEGHIRF-------------TVSGERNGEL-------- 956
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV----KEGEGG 599
+ FE+ D+G GI KE ++F ++V++ G G
Sbjct: 957 ---------------------LNLKFEIADSGIGIKKEDLDSLFGDFVRLDAERNRGIEG 995
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
TGLGL I ++L +MGGDI V+ E G +G+ F V
Sbjct: 996 TGLGLAITRNLCLIMGGDIT-VNSEYG-KGSVFTAQV 1030
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ DD VAE L A ++ C NG A+ V+ PYD +
Sbjct: 1172 RILIVDDITTNLTVAEGLLVPYKAQIDCCLNGLTAISKVKE-------------TPYDLV 1218
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+D MP M+G E + IR + +PIIALTA+ + + G + ++ KP+
Sbjct: 1219 LLDHMMPGMDGIETAKAIRALDLAYTKEMPIIALTANALSGMREMFLANGFNDYISKPIE 1278
Query: 1120 RDHLMEAIK 1128
L + ++
Sbjct: 1279 ISQLNDVVE 1287
>gi|254294996|ref|YP_003061019.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
gi|254043527|gb|ACT60322.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
Length = 1008
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 157/332 (47%), Gaps = 65/332 (19%)
Query: 311 HRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNK 370
HR+ L +++V+ +G M ++ K R+ +H Q++A + A + K
Sbjct: 271 HRSGITRLFIVLVLVIG---GMFIYLLK----MRRVLH------DQVKARKLALSSNQIK 317
Query: 371 SLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTS 430
S A SH+IR + G+ G+ EL + A P ++E+ + N L +++ ILD S
Sbjct: 318 SDFLATMSHEIRTPMNGVLGMAELI-LSAKPSKKIESYAETILSSGNSLQRIIDDILDFS 376
Query: 431 KVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL--DPSDGSVLKFSKVKGDRV 488
K+EAG+M+L D +V EL+++ LF A KGVE+ + DP S V D V
Sbjct: 377 KIEAGRMELERVDCNVVELIDETGQLFAMRAQDKGVEISIFSDPDMP-----SNVFLDPV 431
Query: 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKA 548
+ +Q+L N +SNA+KFT+ G I V+ I + SL
Sbjct: 432 RFRQVLDNFVSNAIKFTNTGSIQVKVF-----EIPDESL--------------------- 465
Query: 549 RGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGL 604
DE+ + F EV DTG GI +E + +FE + Q GGTGLGL
Sbjct: 466 ------------DEDGIRFRVEVVDTGIGISEEAQSRIFEKFSQADTSTTRKFGGTGLGL 513
Query: 605 GIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
I QS++ L G I VD GE G+ F F V
Sbjct: 514 SICQSIIELANGKIG-VDSVEGE-GSTFWFEV 543
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 70/130 (53%), Gaps = 15/130 (11%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+ G ++L+A+D+ + + + + NG+ A+ + P
Sbjct: 711 IAGMRVLIAEDNFINQIFIQEIMNEFECDFVLTSNGQEAVDMALKK-------------P 757
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQV--HIPIIALTAHISGEEADKTIEAGMDVH 1113
+D +LMDC MP+M+G+EA+RKI + + ++ +PI+ALTA+ + ++ ++AGM +
Sbjct: 758 FDIVLMDCLMPVMDGFEASRKIVDYQLSGEISKDLPIVALTANALKGDRERCLDAGMADY 817
Query: 1114 LGKPLNRDHL 1123
+ KP+ ++ L
Sbjct: 818 MTKPVRKEEL 827
>gi|428773834|ref|YP_007165622.1| histidine kinase [Cyanobacterium stanieri PCC 7202]
gi|428688113|gb|AFZ47973.1| histidine kinase [Cyanobacterium stanieri PCC 7202]
Length = 697
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 159/315 (50%), Gaps = 46/315 (14%)
Query: 328 VLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAG 387
VLI+ LT + + + I +A ++AE+ + KS A SH+IR L G
Sbjct: 239 VLIAGLTISWLLVWGVNSLLEVSQRNILLEKARKEAEQANNAKSQFLAMMSHEIRTPLNG 298
Query: 388 ITGLIELCYVEAGP-GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV 446
+ G++ L +++ P SE + ++ + + LL ++N ILD SK+E+GK++L+ EDF++
Sbjct: 299 LFGILNL--LKSTPLNSEQKDFIQTIEDSSKSLLLIINDILDFSKIESGKLELVIEDFNL 356
Query: 447 GELLEDVVDLFHPVAMRKGVEV-VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFT 505
+ +++V+DL A +G+++ + SD + ++GD +L+Q+L NL+SNA+KFT
Sbjct: 357 QKCIKNVIDLLSFQAKSQGLDLKLFWDSDTPI----NLRGDVGRLRQVLINLISNALKFT 412
Query: 506 SEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAM 565
EG ++V ++ + + +L ++ +
Sbjct: 413 EEGEVTVTVSSRRLQGVLDGTLEGNKDYLIH----------------------------- 443
Query: 566 EFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIV 621
F V DTG GI KE + +F +VQ + GGTGLGL I + L RLMGGDI
Sbjct: 444 ---FAVKDTGIGIAKENQDKLFNPFVQADGAINRRYGGTGLGLVISRRLARLMGGDIWF- 499
Query: 622 DKENGERGTCFRFNV 636
K G+ F F V
Sbjct: 500 -KSELGVGSTFYFTV 513
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KIL+A+D+ + ++VA + L+ LG NG L V+ YD I
Sbjct: 574 KILIAEDNPVNQKVALLLLKKLGYYPHIAINGLEVLDAVKKDC-------------YDVI 620
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP M+G AT IR + + IIA+TA+ + + + EAGMD ++ KP
Sbjct: 621 LMDMQMPEMDGLSATEWIRINVD-STMQPYIIAMTANATKADEKRCFEAGMDDYISKPFE 679
Query: 1120 RDHLMEAIKYLH 1131
L E + L
Sbjct: 680 FQVLTEKLNLLE 691
>gi|407924713|gb|EKG17744.1| hypothetical protein MPH_05024 [Macrophomina phaseolina MS6]
Length = 2356
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 153/565 (27%), Positives = 243/565 (43%), Gaps = 92/565 (16%)
Query: 210 GINLYGGRLSIATNDGKVLVQ---GIPNTRMTI-VNDSISFQLITNTKTRAQQMNP---- 261
G+N Y G ++ + +V Q + R T+ V + + + +N ++ NP
Sbjct: 1671 GVNKYPGGQTLEAVEDQVARQVTLYVLRFRETVFVQNLLEDERFSNVTDIYRRRNPDGRA 1730
Query: 262 VKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILL 321
V + G TL +G I+ + +QF + + + LV+ V + AL+
Sbjct: 1731 VIAIPILHGENTL-LGSIYCEGAPNQFSERNLTVL-------RLLVNSVSVSLANALLFK 1782
Query: 322 IVMTVGV----LISMLTFVFKSARAAR-KEMHLCASLIKQMEATQQAERKSMNKSLAFAN 376
V V ++ M ARAA K A I+ M+ ++A + KSL AN
Sbjct: 1783 KVREVSASNQAMLDMQKQSLAQARAAELKAKEAEAVAIQNMKMKEEAAKA---KSLFLAN 1839
Query: 377 ASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGK 436
SH++R L G+ G+ EL + +E E + VCA+ LL ++N +LD SK++AGK
Sbjct: 1840 VSHELRTPLNGVIGMSELLK-GSSLNAEQEGYANSIRVCADTLLSVINDLLDFSKLDAGK 1898
Query: 437 MQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSN 496
M+LI + E + +VV + +G+E V+ D S F V GD V+L QI N
Sbjct: 1899 MKLITVPVSLTETISEVVRALSFTNLERGLETVIR-LDISPELF--VLGDPVRLHQIFMN 1955
Query: 497 LLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVN 556
LLSN+ KFTS+G ++V EA
Sbjct: 1956 LLSNSYKFTSKGTVTV----------------------------------------EAKT 1975
Query: 557 AAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG----GTGLGLGIVQSLVR 612
A+ DE ++ TF V DTG GI +E++K +F + QV++ GTGLGL IV++++
Sbjct: 1976 IAEDDEK-IDVTFSVADTGIGISEEQQKKLFLPFSQVEDASNRSYQGTGLGLSIVKAIIE 2034
Query: 613 -LMGGDIEIVDKENGERGTCFRFNV-FLAIREASAND--NNTQGEKELAGGDSAAGDTQL 668
MGG I + GT F + F + + A D + T E A G+ A +
Sbjct: 2035 TTMGGKIWL--NSTPGNGTTVSFQLRFQKVSKKQAVDAASGTTPPSETAEGEEEAVEDDS 2092
Query: 669 QHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGIN 728
+ V +P +L P E V + N +RIA F++ LG
Sbjct: 2093 SSQEVVVPSPQKTL-------------PKIPREKIRVAIAEDNAINQRIAISFVKKLGFR 2139
Query: 729 VSAVSRWERLHSTLKRLKSKFGSIH 753
A ++ L+R ++ H
Sbjct: 2140 CEAYGDGKKTIEALERAAAQNDPYH 2164
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 12/126 (9%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR--SGLNDQRDLGAPH 1052
P ++ +A+D+ + +R+A ++ LG EA +G+ ++ + + ND
Sbjct: 2110 PREKIRVAIAEDNAINQRIAISFVKKLGFRCEAYGDGKKTIEALERAAAQND-------- 2161
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
PY +LMD +MP+++GY+AT++IR+ I IIA+TA + +K +E GM+
Sbjct: 2162 --PYHLVLMDVQMPVLDGYDATKEIRKHPNPIVRDILIIAMTASAISGDKEKCLEVGMNN 2219
Query: 1113 HLGKPL 1118
+L KP+
Sbjct: 2220 YLAKPV 2225
>gi|190148363|gb|ACE63264.1| cytokinin receptor 1A [Populus trichocarpa]
Length = 1006
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 159/337 (47%), Gaps = 44/337 (13%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E +AE + KS A SH+IR + G+ G++ L ++ S + VC
Sbjct: 371 ELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLALL-LDTDLSSTQRDYAQTAQVCGK 429
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
L+ L+N +LD +K+EAGK++L FD+ +L+DV+ LF + KG+E+ + SD
Sbjct: 430 ALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVP 489
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRA-CVKKPSAIGNPSLSSSRHGFLQ 536
V GD + +QI++NL+ N+VKFT GHI V+ + AI + + + +G
Sbjct: 490 ---EIVVGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLYENAKAITDTKVDTCLNG--G 544
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAM---------EFTFE----------------- 570
S + + L AA D+N+ +F F+
Sbjct: 545 SNESVLTSGSQKFKTLSGCEAAD-DQNSWDVFKHFSDEDFRFDASINVMTNNEASEDVGL 603
Query: 571 ---VDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDK 623
V+DTG GIP + + VF +VQ GGTG+GL I + LV LMGG I + +
Sbjct: 604 MVCVEDTGIGIPLKAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQINFISR 663
Query: 624 ENGERGTCFRFN-VFLAIREASANDNNTQGEKELAGG 659
E G+ F F VF ++ + N+ + +EL G
Sbjct: 664 P--EVGSTFSFTAVFGTCKKNTFNNMEKRNAEELPSG 698
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 30/153 (19%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q L GK+ILV DD+ + RRVA L+ GA E E+G+ AL+L L PH
Sbjct: 854 QSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKL----------LQPPH 903
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEE------------------KRNQVHIPIIALT 1094
YD MD +MP M+G+EATR+IR+ E ++ Q HIPI+A+T
Sbjct: 904 T--YDACFMDIQMPEMDGFEATRRIRQMESQANEQMNGESMVEEGTARKVQWHIPILAMT 961
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
A + D+ +++GMD ++ KP ++L +A+
Sbjct: 962 ADVIHATHDECLKSGMDGYVSKPFEEENLYQAV 994
>gi|456864281|gb|EMF82680.1| GHKL domain protein [Leptospira weilii serovar Topaz str. LT2116]
Length = 603
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 149/302 (49%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + ++ ++V A
Sbjct: 206 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYIQILSVSA 264
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L +E F + +L+++ DL +P+A +K + + L +G
Sbjct: 265 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKRIGLRL---EGK 321
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD+++L+QIL NL N +KFT+ G + + K S
Sbjct: 322 FEIQEYVYGDQLRLRQILWNLTGNGIKFTNRGEVVLSVSQKNIS---------------- 365
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+D+ ++EFT V D+G GIP EK+K VF+ + Q
Sbjct: 366 -----------------------KDKISIEFT--VSDSGIGIPLEKQKQVFDAFSQSDTS 400
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG + + KE G+ F F + I S + +
Sbjct: 401 TARKFGGSGLGLSITKQLVELQGGTLNLESKEGC--GSKFTFAITYGIPSESEIEKIFEA 458
Query: 653 EK 654
EK
Sbjct: 459 EK 460
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + + +ILVA+D+ + E L+ LG NG ++ + LN
Sbjct: 462 KDLESAYSNATSKSMRILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIE--KMQLN- 518
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 519 ----------VFDMILMDIHMPEVDGMEATKWIRSQKQNAEFPI-IIALTADVIESNKEM 567
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ +L KPL+ L + + +
Sbjct: 568 YISKGMNDYLAKPLDLPLLKKTLDF 592
>gi|295094189|emb|CBK83280.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
Length = 581
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 168/347 (48%), Gaps = 60/347 (17%)
Query: 323 VMTVGVLISMLTFVFKSARAARKEMHLCASLI---KQMEATQQAERKSMNKSLAF----- 374
+M V + + L VF + + ++ +I KQ E ++ + ++ + A+
Sbjct: 146 LMDVEITMESLQKVFNTVMYKSEADYINMVVIDVTKQKETEEKLSKAIVDANAAYKTQAE 205
Query: 375 --ANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKV 432
AN SH+IR + GI G+++L + ++ NL CA+ LL L+N ILD SK+
Sbjct: 206 FLANMSHEIRTPINGILGMLQLTLMAEDLQADYRDNLITAKNCADTLLRLINDILDISKL 265
Query: 433 EAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQ 492
EAGK ++ EE FD+ +ED V P+A KG++ LD S GS + V+GD +++Q
Sbjct: 266 EAGKYKIKEETFDIRTAIEDTVAAQVPIATNKGLQ--LDCSFGSNIP-KLVRGDGQRIQQ 322
Query: 493 ILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDL 552
+L+ LLSNA+KFTSEG + V+ ++S G
Sbjct: 323 VLNCLLSNAIKFTSEGSVRVK-------------IASMDDG------------------- 350
Query: 553 EAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQ 608
+N ++ V DTG GI + +F + QV + GG+GLGL I +
Sbjct: 351 ---------DNKIKIRMAVADTGIGISEANMSKLFIRFSQVDASDTRKYGGSGLGLVITK 401
Query: 609 SLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKE 655
+V LMGG+I + KE + G+ F + L + +A+ + EKE
Sbjct: 402 QIVELMGGNITVQSKE--DIGSTFIVEIPLKVIKAADAADEFLKEKE 446
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 75/134 (55%), Gaps = 15/134 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILVA+D + ++V L G + + ENG+ A++L ++ + YD
Sbjct: 460 RILVAEDEPVNQQVIGKLLGMAGFSYDIAENGQKAVELFKTKI-------------YDAA 506
Query: 1060 LMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
L D +MP+M+G AT++IRE E K + +PIIA+TA + ++ +E +D ++ KP
Sbjct: 507 LFDVQMPVMDGIAATQEIREIERKEKRKRLPIIAVTARAMFGDKERILENQLDDYIAKPY 566
Query: 1119 NRDHLMEAI-KYLH 1131
N + +++ + KY+
Sbjct: 567 NLNDVVDTLNKYID 580
>gi|418738449|ref|ZP_13294844.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|410745942|gb|EKQ98850.1| 7TM diverse intracellular signaling [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
Length = 822
Score = 125 bits (314), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 162/334 (48%), Gaps = 63/334 (18%)
Query: 337 FKSARAARKEMHLCASLIKQ------------MEATQQAERKSMNKSLAFANASHDIRAA 384
FK + E+H L+K+ ++A + AE+ S KS AN SH+I
Sbjct: 392 FKLKEGLQSEIHKNIILLKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIWTP 451
Query: 385 LAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDF 444
+ G+ G+++L E + ++ +++ A LL ++N ILD SK+EAGK+ L +E F
Sbjct: 452 MNGVLGMVQLLGT-TKLNDEQKEYIQILSISAKSLLQIINDILDFSKIEAGKISLDKEVF 510
Query: 445 DVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKF 504
+ +L+++ DL +P+A +K + + L+ D S ++ V GD+++L+QIL NL N +KF
Sbjct: 511 SIHSVLDEIHDLLYPLAKQKRIGLRLE--DKSEIQ-EYVYGDQLRLRQILWNLTGNGIKF 567
Query: 505 TSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENA 564
T+ G + + K S +D+ +
Sbjct: 568 TNHGEVVLNVSQKNIS---------------------------------------KDKIS 588
Query: 565 MEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
++FT V D+G GIP EK+K VF+ + Q GG+GLGL I + LV L GG + +
Sbjct: 589 IKFT--VSDSGIGIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQLVELQGGTLNL 646
Query: 621 VDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
KE+ G+ F F + I S + + EK
Sbjct: 647 ESKES--YGSKFTFTITYDIPSESEIEKILEAEK 678
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + + KILVA+D+ + E L+ LG NG ++ +
Sbjct: 680 KDLESAYSNATSKSMKILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIEKM------ 733
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
Q D +D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 734 QLDF-------FDMILMDIHMPEVDGIEATKWIRSQKQNTEFPI-IIALTADVIESNKEV 785
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ +L KPL+ L + + +
Sbjct: 786 YISKGMNDYLTKPLDLPLLKKTLDF 810
>gi|167629252|ref|YP_001679751.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
gi|167591992|gb|ABZ83740.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
Length = 662
Score = 125 bits (314), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 142/307 (46%), Gaps = 42/307 (13%)
Query: 334 TFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIE 393
T + R++M L K+ +A+ + KS AN SH+IR + I G+ +
Sbjct: 339 TLALEKELQERRQMQTALQLAKE-----EADVANRAKSAFLANMSHEIRTPMNAIIGIAD 393
Query: 394 LCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDV 453
L + E E + + N+LL L+N ILD SK+E+GK L +F + L+ D
Sbjct: 394 LLW-ETPLNEEQKKFVHIFRDAGNNLLALINDILDLSKIESGKQVLQPVEFYLDNLVNDT 452
Query: 454 VDLFHPVAMRKGVEVVLD-PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISV 512
+ LF A KG+E+ + P D L + GD L+Q+L NLL NA+KFT G +S+
Sbjct: 453 IALFSTRAQEKGLELTVRLPDDIPRL----LLGDVGALRQVLFNLLGNAIKFTETGAVSL 508
Query: 513 RACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVD 572
V P + +PS G N + F V
Sbjct: 509 HIEVADP--VVSPS-----------------------GATADPNPPHFPGQPVHLRFSVI 543
Query: 573 DTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGER 628
DTG GIP E + +F+++ QV GGTGLGL I + LV LMGG I VD E G +
Sbjct: 544 DTGLGIPPEWQDRIFDSFTQVDASLTRRFGGTGLGLAICKRLVELMGGQI-WVDSEPG-K 601
Query: 629 GTCFRFN 635
G+ F F
Sbjct: 602 GSTFTFT 608
>gi|332532904|ref|ZP_08408776.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037570|gb|EGI74022.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
haloplanktis ANT/505]
Length = 1587
Score = 125 bits (314), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 145/284 (51%), Gaps = 52/284 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE ++ KS A SH+IR + G+ G++EL +E+ +ET + A+
Sbjct: 1060 ALVKAEDAAIAKSQFLATMSHEIRTPMNGVLGMLELVQLES-LSKPIETKVDIAKKSAHS 1118
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LLG++N ILD SK EAGK++L E +F+ +L+ +V A KG+E++LD L
Sbjct: 1119 LLGVINDILDFSKAEAGKIELEEINFNGRDLIGEVAAAQAFTAQDKGIEIILDL---VAL 1175
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+ S++ GD +++Q+++NLLSNAVKFTS+G + V A +
Sbjct: 1176 EPSQLCGDPGRIRQVITNLLSNAVKFTSQGEVVVSAKI---------------------- 1213
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
NK A+G +EF + D+G GI EK++ +F + QV
Sbjct: 1214 ------NKVAQG--------------LEFVVSIKDSGIGISLEKQEQLFTPFSQVDASTT 1253
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GG+GLGL I + L LMGG I + E G +G+ F + L
Sbjct: 1254 REYGGSGLGLAICKQLCELMGGAISLT-SEAG-KGSTFTATIML 1295
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 14/142 (9%)
Query: 988 ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
++ + Q+P +IL+ +D+ + R+VA + L+ L V ENG+ A+ ++ S D
Sbjct: 1456 KKEKVQEP---TQILLVEDNPINRQVATLMLKKLNCDVTIAENGQLAIDILES-----HD 1507
Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQ-VHIPIIALTAHISGEEADKTI 1106
G + +LMDC+MP+M+G+ T IR+ Q +I IIA+TA+ + ++ I
Sbjct: 1508 SGF-----FKLVLMDCQMPVMDGFATTAAIRKGMAGIQHKNIRIIAITANAMDSDKERCI 1562
Query: 1107 EAGMDVHLGKPLNRDHLMEAIK 1128
AGMD +L KP+ D L + ++
Sbjct: 1563 TAGMDDYLSKPIQLDILKDKLE 1584
Score = 45.8 bits (107), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LV DD+ R V L H GA V + AL + + YD +
Sbjct: 1315 VLVVDDNETNRIVISQQLEHWGAKVALACDAREALDMCAQQYKSNNCM-------YDIAV 1367
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
+D +MP M+G E + ++ E +P++ +T+ E A + AG + KP+
Sbjct: 1368 LDMQMPGMDGIELCKALKAHEHYKS--MPLVMMTSIAGMEGAQRYSNAGFQAYFPKPVTT 1425
Query: 1121 DHLMEAI 1127
L+ A+
Sbjct: 1426 ADLISAL 1432
>gi|386817642|ref|ZP_10104860.1| histidine kinase [Thiothrix nivea DSM 5205]
gi|386422218|gb|EIJ36053.1| histidine kinase [Thiothrix nivea DSM 5205]
Length = 602
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 156/323 (48%), Gaps = 55/323 (17%)
Query: 327 GVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALA 386
G+L + ++ R AR+ + + K A AE K+ A SH+IR +
Sbjct: 49 GILGANISLTITRYRFARQLQTMGGIINKAKTAQHVAEEAVKTKARFLATMSHEIRTPMN 108
Query: 387 GITGLIELCYVEAGPGSELETNLRQ-MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFD 445
G+ G+ L + P S+ ++ + +++ LL ++N +LD SK+EAGK+ L E FD
Sbjct: 109 GVIGMTRL--LMNTPMSKKQSEFVESIHLSGEHLLTVINDVLDFSKIEAGKLDLKREAFD 166
Query: 446 VGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFT 505
+ +ED+++L H A+ K +E+ S+ F ++GD V+L+QIL+NL+ NA+KFT
Sbjct: 167 LRAAIEDILNLLHAKALEKNLELAF-AVGSSIPDF--IEGDMVRLRQILTNLIGNAIKFT 223
Query: 506 SEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAM 565
G +++ +S S HG DE +
Sbjct: 224 DSGEVTIFV------------ISRSHHG---------------------------DEYEL 244
Query: 566 EFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIV 621
E F+++DTG GIP + ++FE + +V E + GTGLGL I + L+ +M G I +
Sbjct: 245 E--FQINDTGPGIPPNRLDSIFEQFSRVDEKQVQRHEGTGLGLAISRHLIDMMDGRIWV- 301
Query: 622 DKENGERGTCFRFNVFLAIREAS 644
G RF+ + R+A+
Sbjct: 302 ---ESTLGIGSRFHFTIKTRKAN 321
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 18/120 (15%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+A+D+ + + VA L L T + ENG AL+ ++ QR YD I
Sbjct: 480 ILLAEDNPINQVVATAILEELAYTADVVENGLLALRALQ-----QRH--------YDVIF 526
Query: 1061 MDCEMPIMNGYEATRKIREE--EKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD +MP ++G EATR+IR +R V IIA+TA+ + + + AGM+ ++ KP+
Sbjct: 527 MDMQMPELDGLEATRRIRANFLPERQPV---IIAMTANAMAGDRQECLNAGMNDYISKPI 583
>gi|444737612|emb|CCL97997.1| histidine kinase 2, putative, expressed [Musa balbisiana]
Length = 999
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 166/352 (47%), Gaps = 42/352 (11%)
Query: 320 LLIVMTVGVLISMLT--FVFKS--ARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFA 375
L I ++G L+ L ++F + +R A+ E + ME ++AE + KS A
Sbjct: 372 LAITTSIGTLVIALLVGYIFHATVSRIAKVE----DDYRQMMELKKRAEAADVAKSQFLA 427
Query: 376 NASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAG 435
SH+IR + G+ G++++ ++ E +R L+ L+N +LD +K+E+G
Sbjct: 428 TVSHEIRTPMNGVLGMLQML-MDTDLDITQEDYVRTAQASGKALVSLINEVLDQAKIESG 486
Query: 436 KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILS 495
K++L FD+ +L+D++ LF+ A KG+E+ + SD + GD +++QI++
Sbjct: 487 KLELEAVPFDLRAVLDDILSLFYGKAQEKGLELAVYVSDQVP---DVLVGDHGRIRQIIT 543
Query: 496 NLLSNAVKFTSEGHISVRACV---------------KKPSAIGNPSLSSSRHGFLQSISC 540
NL+ N++KFT GHI + + + G P + R S
Sbjct: 544 NLMGNSIKFTERGHIYLTVHIFEEVLNSLDKEIEVHSTDTLCGFPVANRRR-------SW 596
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG---- 596
+KN K + N + V+DTG GIP E + VF ++QV
Sbjct: 597 ESFKNFKLELPASDPSLLSTSSNHINLIISVEDTGVGIPLEAQSRVFTPFMQVGPSISRI 656
Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
GGTG+GL I + LV LM G+I V + + G+ F F V L A N N
Sbjct: 657 HGGTGIGLSISKCLVGLMKGEIGFVSQP--QIGSTFTFTVVLT--RACTNSN 704
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 38/156 (24%)
Query: 986 DGERSQ----AQKPLRG----KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
DGE S+ Q LRG K+ILV DD+++ RVA L+ GA V E+G+ A+ +
Sbjct: 840 DGEHSRNGRLPQLSLRGLLHEKQILVVDDNIVNLRVAYGALKKYGAEVTCAESGKKAIGM 899
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK--RNQV--------- 1086
++ PH +D MD +MP M+G+EAT++IRE E Q+
Sbjct: 900 LK----------PPH--KFDACFMDIQMPEMDGFEATKRIREMEADINKQIECREVPVET 947
Query: 1087 -------HIPIIALTAHISGEEADKTIEAGMDVHLG 1115
H+PI+A+TA + ++ + + V +G
Sbjct: 948 SENVLHWHVPILAMTADVIQATHEECLRMLVHVFIG 983
>gi|392425026|ref|YP_006466020.1| PAS/PAC sensor hybrid histidine kinase [Desulfosporosinus
acidiphilus SJ4]
gi|391354989|gb|AFM40688.1| PAS/PAC sensor hybrid histidine kinase [Desulfosporosinus
acidiphilus SJ4]
Length = 905
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 138/282 (48%), Gaps = 51/282 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A + AE + KS AN SH+IR + G+ G+I+L + G E L CA+
Sbjct: 406 AKENAEAANQAKSEFLANMSHEIRTPINGMIGMIDLTLL-TGMSREQREYLEIAKTCADS 464
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
L+ ++N ILD SK+EAGK+ + F++ ELL+ + P+A+ K + L+ S S L
Sbjct: 465 LMKIINDILDFSKIEAGKLVIETIGFNIKELLDSIFKAHQPMALNKSLR--LNYSCSSSL 522
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+ GD +L+QI+SNLL+NA+KFT G +++
Sbjct: 523 P-QNLIGDPNRLRQIISNLLNNALKFTELGEVTL-------------------------- 555
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV----K 594
V R + +E F + DTG GI + ++ +F N+ QV +
Sbjct: 556 ---------------TVEELSRIDETVELAFSISDTGIGISEREQAKLFRNFSQVDGSIR 600
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL I + LV++MGGDI + ++ G+ F FN+
Sbjct: 601 RKYGGTGLGLAISKKLVQIMGGDITLESQKGA--GSTFSFNL 640
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 19/140 (13%)
Query: 990 SQAQ--KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
SQA KPLR IL+A+D + V I L+ G +EA NG AL+ S Q
Sbjct: 659 SQANIVKPLR---ILIAEDDRVNLMVLTIMLKEKGHFIEAAMNGVEALE---SHARSQ-- 710
Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE 1107
YD I MD +MP+M+G E T+KIRE E N H PIIA+TA+ + +K +
Sbjct: 711 --------YDVIFMDIQMPVMDGIEVTKKIREREG-NDRHTPIIAITAYALVGDREKFLS 761
Query: 1108 AGMDVHLGKPLNRDHLMEAI 1127
G+D ++ KP+ D L +
Sbjct: 762 YGLDEYIPKPIKMDELFRVL 781
>gi|456888406|gb|EMF99389.1| GHKL domain protein [Leptospira borgpetersenii str. 200701203]
Length = 400
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + ++ +++ A
Sbjct: 2 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYIQILSISA 60
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L +E F + +L+++ DL +P+A +K + + L+ D S
Sbjct: 61 KSLLQIINDILDFSKIEAGKISLDKEVFSIHSVLDEIHDLLYPLAKQKRIGLRLE--DKS 118
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
++ V GD+++L+QIL NL N +KFT+ G + + K S
Sbjct: 119 EIQ-EYVYGDQLRLRQILWNLTGNGIKFTNHGEVVLNVSQKNIS---------------- 161
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+D+ +++FT V D+G GIP EK+K VF+ + Q
Sbjct: 162 -----------------------KDKISIKFT--VSDSGIGIPLEKQKQVFDAFSQSDTS 196
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG + + KE+ G+ F F + I S + +
Sbjct: 197 TARKFGGSGLGLSITKQLVELQGGTLNLESKES--YGSKFTFTITYDIPSESEIEKILEA 254
Query: 653 EK 654
EK
Sbjct: 255 EK 256
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + + KILVA+D+ + E L+ LG NG ++ +
Sbjct: 258 KDLESAYSNATSKSMKILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIEKM------ 311
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
Q D +D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 312 QLDF-------FDMILMDIHMPEVDGIEATKWIRSQKQNTEFPI-IIALTADVIESNKEV 363
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ +L KPL+ L + + +
Sbjct: 364 YISKGMNDYLTKPLDLPLLKKTLDF 388
>gi|357405798|ref|YP_004917722.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
gi|351718463|emb|CCE24134.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
Length = 1584
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 136/284 (47%), Gaps = 53/284 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A QQAE + KS AN SH+IR L I GL L ++A L ++ +
Sbjct: 1010 ARQQAEVANRAKSAFIANMSHEIRTPLNAILGLAHLMRIDATAAQS--DRLNKIEIAGRH 1067
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N ILD SK+EAGK+QL DF + +L+ V L A K + + LD D SV
Sbjct: 1068 LLSIINDILDLSKIEAGKIQLNHVDFHLSAVLDHVRSLIAESAHMKNLAITLD--DDSVP 1125
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
++ + GD +L+Q L NL SNAVKFT G I +RA +
Sbjct: 1126 EW--LYGDVTRLRQALLNLASNAVKFTEHGCIEIRAKL---------------------- 1161
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG-- 596
LEA RD++ + FEV D+G G+ E+ + +F + QV E
Sbjct: 1162 -------------LEA-----RDDD-LRVRFEVQDSGIGLEAEQLQRLFRPFTQVDETIT 1202
Query: 597 --EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I L LMGG+ + E G+ G+ F F V L
Sbjct: 1203 RQYGGTGLGLSITLRLAELMGGEAG-AESEPGQ-GSTFWFTVHL 1244
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 17/146 (11%)
Query: 986 DGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQ 1045
D E+ Q + RG+++L+A+D+ + R VA L +G +V+ E+G AA++ +
Sbjct: 1261 DAEQ-QLRDTRRGQRVLLAEDNPINREVALELLHSVGLSVDVAEDGIAAVEKAKRQ---- 1315
Query: 1046 RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT 1105
YD +LMD +MP M+G AT IR E PI+A++A++ E+
Sbjct: 1316 ---------HYDLVLMDMQMPNMDGLAATLAIR--ELPGYCETPILAMSANVFDEDRKSC 1364
Query: 1106 IEAGMDVHLGKPLNRDHLMEA-IKYL 1130
+ GM+ + KP++ + L +K+L
Sbjct: 1365 LAVGMNDFIAKPVDLEQLYNTLLKWL 1390
>gi|334120708|ref|ZP_08494786.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333455980|gb|EGK84618.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 2165
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 168/363 (46%), Gaps = 43/363 (11%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
+ + + + SML +S A RK L K+ AE S KS AN SH++
Sbjct: 1599 VQLAIAIQQSMLFEQAQSEIADRKLAEAALQLAKEA-----AESASRAKSDFLANMSHEL 1653
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE 441
R L GI G I+L V+ + + +L ++ C N LL L+N +LD SK+EA KM+L
Sbjct: 1654 RTPLNGILGYIQLLKVDKNLTPDQQESLNNIHQCGNHLLMLINDVLDLSKIEASKMELSL 1713
Query: 442 EDFDVGELLEDVVDLFHPVAMRKGV----EVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
+ ++ ++DLF + +KG+ E V DG + D +L+Q+L NL
Sbjct: 1714 TNVHFASFVKSIIDLFQMRSAQKGIAFNYEQVSALPDG-------ILADEKRLRQVLINL 1766
Query: 498 LSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL-----------------QSISC 540
LSNAVKFT+ G ++ + + P + Q +S
Sbjct: 1767 LSNAVKFTNRGSVTFKVGYAENFPENYPQTNCDTCNLTAEIATKTMIHLTANLDAQQMSL 1826
Query: 541 LFYKNKKARGDLEAVNAAQRDENA--MEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG 598
+ K+AR E + A D+ A + F+++DTG GI + K + +F + QV +
Sbjct: 1827 PPLETKEAR---EVITADNTDDRAPTPKIRFQIEDTGIGIAQNKLEEIFLPFHQVGDHNN 1883
Query: 599 ---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKE 655
GTGLGL I Q LV++MG I + + +G+ F +V L + + Q ++
Sbjct: 1884 FVEGTGLGLSISQKLVKMMGSQIRV--QSTPGKGSIFWLDVDLPAVAQCSELPSRQQKRR 1941
Query: 656 LAG 658
L G
Sbjct: 1942 LVG 1944
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 17/122 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+K+L+ DD + R + L HLG + +GE L A LP D
Sbjct: 1950 RKVLIVDDHEVNRAMLHRLLFHLGFEIAEATDGEDCLH------------KAQEFLP-DI 1996
Query: 1059 ILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
ILMD MP+MNG+EATR++R+ E ++ V I+AL+A++ ++I AG D L KP
Sbjct: 1997 ILMDLLMPVMNGWEATRRLRQLPELKDTV---ILALSANVYETTKQESILAGCDNFLTKP 2053
Query: 1118 LN 1119
+
Sbjct: 2054 IQ 2055
>gi|254409964|ref|ZP_05023744.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196183000|gb|EDX77984.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1946
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 156/318 (49%), Gaps = 58/318 (18%)
Query: 335 FVFKSARAARKEMHLCASLIKQ---ME-ATQQAERKSMNKSLAFANASHDIRA---ALAG 387
A+ +E H L +Q ME A Q AE + KS A SH+IR A+ G
Sbjct: 1217 IALAQAQLLEQEKHQRQQLAEQNVAMEKAKQIAEAANRAKSDFLATMSHEIRTPMNAVIG 1276
Query: 388 ITGLI---ELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDF 444
+TGL+ +L + +A E +R LL ++N ILD SK+E+GK++L E+ F
Sbjct: 1277 MTGLLLDTQLSHEQA----EFAETIRN---SGEALLTIINDILDFSKIESGKLELEEQPF 1329
Query: 445 DVGELLEDVVDLFHPVAMRKGVEV--VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAV 502
++ +E+ +DL P A K +E+ + DP + ++GD +L+QIL NLLSNA+
Sbjct: 1330 NLRTCIEESLDLLTPKAAEKAIELAYLFDPHTPNT-----IRGDITRLRQILVNLLSNAL 1384
Query: 503 KFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562
KFT +G ++V K+ S QS+ L ++ K E
Sbjct: 1385 KFTHQGEVTVSVSSKRVSP--------------QSLEQLSHRTNK--------------E 1416
Query: 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDI 618
E F V DTG GIP ++ +F+ + QV GGTGLGL I + L +MGG I
Sbjct: 1417 QQYEILFAVKDTGIGIPPDRLDRLFKAFSQVDSSTSRHYGGTGLGLVISKRLSEMMGGRI 1476
Query: 619 EIVDKENGERGTCFRFNV 636
V+ E G +G+ F F +
Sbjct: 1477 -WVESEVG-KGSIFYFTI 1492
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 19/138 (13%)
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
A PLR IL+A+D+++ ++V L +G + NG L+ A
Sbjct: 1656 ANIPLR---ILLAEDNVVNQQVGLHILGRMGYRADVAANGLEVLE-------------AL 1699
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKI-REEEKRNQVHIPIIALTAHISGEEADKTIEAGM 1110
H YD +LMD +MP M+G +AT++I +E N+ H IIA+TA+ + + ++AGM
Sbjct: 1700 HRQSYDVVLMDVQMPEMDGLKATQRICQEWSAENRPH--IIAMTANAMRGDRETCLQAGM 1757
Query: 1111 DVHLGKPLNRDHLMEAIK 1128
D ++ KP+ + L+ +++
Sbjct: 1758 DDYISKPIRVEELVRSLQ 1775
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q L GK++L+ DD+ RR+ + + G A E+GE AL ++ G
Sbjct: 1509 QPQLEGKRMLIVDDNATNRRILTLQGQSWGVLTRAAESGEQALDWLQQGET--------- 1559
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
+D ++D MP M+G +IR + + IP++ LT+ E + + EA
Sbjct: 1560 ---FDLAILDMHMPGMDGVNLASQIRRQPDGQE--IPLVMLTSIGKPENSGQLDEAKFAA 1614
Query: 1113 HLGKPLNRDHL 1123
L KP+ + L
Sbjct: 1615 FLTKPIKQSQL 1625
>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
Length = 1523
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 138/273 (50%), Gaps = 59/273 (21%)
Query: 374 FANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTS 430
A SH+IR A+ G+TGL+ +E +E + + V + LL L+N ILD S
Sbjct: 853 LATMSHEIRTPMNAVLGMTGLL----LETPLNAEQRDFVETIRVSGDALLTLINDILDFS 908
Query: 431 KVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV-VLDPSDGSVLKFSKVKGDRVK 489
K+E G+M+L DFD+ LE+V DLF P A KG+E+ VL P + V ++ ++GD +
Sbjct: 909 KLEVGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLVPPE--VPRY--LRGDASR 964
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+QIL+NL+SNA+KFT +G + ++A + + +A
Sbjct: 965 LRQILNNLVSNAIKFTHQGEVVIQAELMQETA---------------------------- 996
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLG 605
++ V DTG GIPK+ + +F+ + QV GGTGLGL
Sbjct: 997 -------------THVQLRLSVRDTGIGIPKDAQTKLFQPFTQVDASTTRKYGGTGLGLA 1043
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
I + L LMGG I ++ E G RG+ F + L
Sbjct: 1044 ICKQLTELMGGRI-FLESEEG-RGSTFSLELTL 1074
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 26/204 (12%)
Query: 928 EHSRRDI-MPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQ-TEIEEE 985
EHSRR + A+ L K P + ++++ G SSG +S + +
Sbjct: 1188 EHSRRAAEIGFAAYLTK--------PVKQTRLQEALVMALGKSSGLATSLLGMGPPLSQS 1239
Query: 986 DGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQ 1045
S+ Q+PLR IL+A+D+ + ++VA L+ LG + NG+ L L++
Sbjct: 1240 APSASRPQQPLR---ILLAEDNPVNQKVALRQLQSLGYMADVVANGQEVLDLLQR----- 1291
Query: 1046 RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT 1105
+ YD ILMDC+MP+M+GYEATR++R++E+ + +IA+TA+ E+ ++
Sbjct: 1292 --------VQYDLILMDCQMPVMDGYEATRRLRQQERGSGHRTVVIAITANAMQEDRERC 1343
Query: 1106 IEAGMDVHLGKPLNRDHLMEAIKY 1129
++AGMD +L KP+ ++ L + +
Sbjct: 1344 LQAGMDDYLSKPVLKEDLERVLNH 1367
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 968 NSSGEGSSRYKQTEIEEEDGERSQAQKP------LRGKKILVADDSMMLRRVAEINLRHL 1021
+ G GS+ + +E + R +Q+P L+GK++LV DD+ R++
Sbjct: 1060 SEEGRGSTFSLELTLERQPYARQISQQPARIPVDLQGKRLLVVDDNATNRKIVRYQATAW 1119
Query: 1022 GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEE 1081
G VE EN AL +R A +P+ ++D +MP ++G R I+ +
Sbjct: 1120 GMVVEEAENAYQALDKLRQ--------AAREGIPFPLAVLDMQMPEVDGETLGRWIKADP 1171
Query: 1082 KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ +Q ++ +T+ GE + + E G +L KP+ + L EA+
Sbjct: 1172 ELSQTQ--LVMMTSLGLGEHSRRAAEIGFAAYLTKPVKQTRLQEAL 1215
>gi|38347753|dbj|BAD01586.1| histidine kinase 3 [Zea mays]
Length = 1049
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 37/305 (12%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E QAE + KS A SH+IR + G+ G++++ +EL+T + V A
Sbjct: 433 ELKGQAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM-----DTELDTTQQDFVVTAQ 487
Query: 418 D----LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ L+ L+N +LD +K+E+G+++L FDV ++L++V+ LF+ + KG+E+ + S
Sbjct: 488 ESGKVLINLINEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYEKSQAKGIELAVLVS 547
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRA-CVKKPSAIGNPSLSSSRH 532
D + GD + +QI++NL+ N++KFT +GHI V+ VK+ S GN S H
Sbjct: 548 DQVP---DVLIGDPWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELSRKGNNFCDVSAH 604
Query: 533 G---FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEF------------TFEVDDTGKG 577
S + + + LE ++ + EN F V+DTG G
Sbjct: 605 NREILYDSDNSMLWNTLSG---LEVADSWRSLENFTMFKNSNGETDTIRLAVRVEDTGIG 661
Query: 578 IPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFR 633
I K+ + +F ++Q GGTG+GL I + LV LMGG+I K G+ F
Sbjct: 662 ITKDAQMRIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSG--VGSTFS 719
Query: 634 FNVFL 638
F
Sbjct: 720 FTAIF 724
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 30/156 (19%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q L GK+ILV DD+ + R+VA +L+ G+TV ++G A+ +++ PH
Sbjct: 899 QSVLTGKQILVVDDNAVNRKVAAGSLKKYGSTVTCVDSGSDAIDMLK----------PPH 948
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEK------------------RNQVHIPIIALT 1094
+D MD +MP M+G+EATR IR EK + H+PI+A+T
Sbjct: 949 T--FDACFMDVQMPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMT 1006
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
A + +K ++ GMD ++ KP L A+ +
Sbjct: 1007 ADVIQATFEKCMQCGMDGYVSKPFEEQQLYSAVAHF 1042
>gi|345872034|ref|ZP_08823974.1| integral membrane sensor hybrid histidine kinase [Thiorhodococcus
drewsii AZ1]
gi|343919568|gb|EGV30314.1| integral membrane sensor hybrid histidine kinase [Thiorhodococcus
drewsii AZ1]
Length = 703
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 146/297 (49%), Gaps = 52/297 (17%)
Query: 351 ASLIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
+SL++Q+ EA QA+R + KS A +H++R L G+ G++EL + E +L
Sbjct: 175 SSLLRQIQEARDQAQRANKAKSDFLAVMTHELRTPLTGLVGMVELLKTTRLDAEQRE-HL 233
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
R ++ AN L L+ ILD SK+EAGK+ L FD +L+ V + A+ G+E+V
Sbjct: 234 RDIDTAANALAMLVGDILDLSKIEAGKLVLERIPFDPRDLVRQVCGVVSSKALEAGLELV 293
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
+ V + V GD ++++QIL NL+ NA+KFT +G + +R ++ P A
Sbjct: 294 CR-VESEVPR--SVMGDPLRVRQILFNLVGNAIKFTPQGQVLLRLSLESPEA-------- 342
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
D FE+ D+G GI +K T+FE
Sbjct: 343 -------------------------------DRMGARLLFEIVDSGIGISADKLDTLFER 371
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
+ QV + GGTGLG I + L LMGG IE+ +E RG+ RF+V L + E
Sbjct: 372 FTQVDDSTTRRFGGTGLGTTIARDLSGLMGGSIEVASEEG--RGS--RFSVRLPLVE 424
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 15/133 (11%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G ++LVA+D+ + +V L +G +GE AL+ G+ YD
Sbjct: 577 GIRVLVAEDNPLAAKVLTAFLSRMGFPYARFSDGETALKEALKGV-------------YD 623
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
++D MP + G + R+ R E R +PI+ALTA S E + AGM L KP
Sbjct: 624 IAIVDLNMPKLGGIDFVRRYRAE--RADHPLPIVALTASASEEVRQDCLAAGMAGFLVKP 681
Query: 1118 LNRDHLMEAIKYL 1130
++ + L + I+ L
Sbjct: 682 VSPEALRQTIERL 694
>gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
Length = 921
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 144/295 (48%), Gaps = 53/295 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+ A + AE S KS A SH+IR + G+ G+ EL +++G E +
Sbjct: 260 LRAKEAAEAASQAKSDFLATMSHEIRTPMNGVLGMTEL-LLDSGLNHEQRHFAEAVENSG 318
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDG 475
LLG++N ILD SK+E+G ++L +F++G+LLED + +F A +K +E++ D P +
Sbjct: 319 RHLLGIINDILDFSKIESGHLELEAVEFELGDLLEDTLAMFAQPAEKKRLELIADLPPEV 378
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
V+GD +L+QI+ NL +NA+KFT G + VRA + L G+
Sbjct: 379 R----RCVRGDPFRLRQIVGNLANNAIKFTERGEVVVRARL----------LGEGTDGYR 424
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
IS V+DTG GIP ++ +FE + Q+
Sbjct: 425 LRIS-------------------------------VEDTGIGIPPHAQQKIFEQFSQLDG 453
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
GGTGLGL I + LV LMGG+I VD G G CF ++ L +++A
Sbjct: 454 STTRQFGGTGLGLAICRRLVGLMGGEIG-VDSRPGA-GACFHIDLCLPAGQSTAE 506
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 15/135 (11%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
+P RG ++L+A+D+ + ++V L LG V +GE A++L +
Sbjct: 656 RPTRGGRVLLAEDNPVNQQVGLAMLAKLGIAVRVANDGEEAVKLAATE------------ 703
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
+D ILMDC MP+++GYEA+ IR E +V PI+ALTA++ ++ + AGMD
Sbjct: 704 -AFDLILMDCHMPVLDGYEASAAIRASEHAPRV--PIVALTANVMEGNRERCLAAGMDDF 760
Query: 1114 LGKPLNRDHLMEAIK 1128
L KP + L ++
Sbjct: 761 LAKPYALEQLQSTLQ 775
>gi|343495199|ref|ZP_08733383.1| histidine kinase [Vibrio nigripulchritudo ATCC 27043]
gi|342823567|gb|EGU58180.1| histidine kinase [Vibrio nigripulchritudo ATCC 27043]
Length = 831
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 160/337 (47%), Gaps = 69/337 (20%)
Query: 314 SKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLA 373
S LIL I+M V S+L V + + +K L S+ ++AE+ + KS
Sbjct: 287 STYQLILFIIMLVATAFSLLILVLNATKIEKK---LKVSV-------REAEKANRAKSSF 336
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPGSEL----ETNLRQMNVCANDLLGLLNSILDT 429
AN SH+IR L GI G+ E+ G+ L + L+ ++ + LL L+N +LD
Sbjct: 337 LANMSHEIRTPLNGIIGMAEIL-----KGTRLSAMQKDYLKTIDSSSQTLLMLINDVLDL 391
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+E+GK+Q+ +V E++ D L P A + G+++ +D S VK D K
Sbjct: 392 SKIESGKLQISPHTSNVREVIYDTAALIAPKAHQSGIQLNVDVSTAIP---EHVKVDEHK 448
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+Q++ NL SNA+KFT EG +S+ + SSR SIS L
Sbjct: 449 LRQVMMNLASNAIKFTKEGSVSL--------------ILSSRTFEPDSISLL-------- 486
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLG 605
F V DTG GI K++ +F+ + Q + GGTGLGL
Sbjct: 487 -------------------FRVIDTGIGIDVAKQQKIFQAFEQEHSDTSKEFGGTGLGLA 527
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
I +V LMGG +E++ + +G+ F+F + I +
Sbjct: 528 ISDKIVELMGGKLELISAKG--KGSEFKFEITCPIEQ 562
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 12/122 (9%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D+ + ++VAEINL +G V NG+ A+ ++ D + A +
Sbjct: 701 QILLVEDNAVNQKVAEINLERMGLRVFIANNGQEAVDAYQA---DPKGYAA--------V 749
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMDC MP+ +G+EAT +IR E NQ+ IPIIALTA + ++ K + GMD +L KP
Sbjct: 750 LMDCMMPVKDGFEATAEIRAYESDNQLSPIPIIALTASVLEDDIQKCFDVGMDDYLPKPF 809
Query: 1119 NR 1120
+
Sbjct: 810 TK 811
>gi|256829012|ref|YP_003157740.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256578188|gb|ACU89324.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 1044
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 136/286 (47%), Gaps = 50/286 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+ A + AE + KS AN SH+IR L GI G+++L + +LE + +
Sbjct: 660 LRAKEAAEAANRAKSEFLANMSHEIRTPLNGIMGMLQLLQTTSLNHEQLEYSSMAVQ-ST 718
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+ L LL+ ILD S+VEAGKM + E FD+ + L +DLF +A++ GVE+ D
Sbjct: 719 SRLTSLLSDILDLSRVEAGKMPIRPEVFDLRKKLHQSIDLFASIALQSGVELRHHFDDTL 778
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD ++L+Q+L+NL+ NA KFT G +SV
Sbjct: 779 P---QHVIGDPLRLQQVLTNLIGNAFKFTERGFVSV------------------------ 811
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
EA R+EN + FEV D+G GIP E +FE + QV +G
Sbjct: 812 ----------------EAYPLPARNENQLRIFFEVSDSGCGIPDEALGLLFEPFSQVSQG 855
Query: 597 EG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
G GLGL I + LV LMGG++ I E G GT F V L
Sbjct: 856 YTRQYQGAGLGLSICKRLVGLMGGNMAI-SSEVG-VGTSIYFCVTL 899
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 35/172 (20%)
Query: 971 GEGSSRY------KQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINL---RHL 1021
G G+S Y K ++ +D +Q + LR +KILVA+D E+NL R+L
Sbjct: 888 GVGTSIYFCVTLDKALKLPAQDSS-AQTKTALRPRKILVAEDD-------EVNLFAVRNL 939
Query: 1022 ----GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077
G V NG L+ + ++D +D +LMD +MP M+G EATR+I
Sbjct: 940 LTKNGHEVVTAHNGHEVLERIM-----EQD--------FDLVLMDIQMPEMDGIEATRRI 986
Query: 1078 R-EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
R E+ + +PIIA+TA+ + +K ++ G+D ++ KP + LME IK
Sbjct: 987 RVTEQATGKKPVPIIAMTAYAMNGDREKLLDKGVDGYVSKPFSIKTLMEVIK 1038
>gi|384493171|gb|EIE83662.1| hypothetical protein RO3G_08367 [Rhizopus delemar RA 99-880]
Length = 2214
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 163/342 (47%), Gaps = 60/342 (17%)
Query: 313 TSKRALIL-LIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKS 371
TS+ ++L L+ +G+ ++ +FKS + K H +I+ +A + RKS +
Sbjct: 1589 TSRHEIVLRLLSQQIGISVTN-ALLFKSIQ---KVTHANVKMIESQKAALEEARKSKEAA 1644
Query: 372 LA--------FANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLL 423
L AN SH++R +G G+I L + + L C LL ++
Sbjct: 1645 LHAMKLKADFLANMSHELRTPFSGFYGMISLLSETVLDAEQQDIVLTAKESCET-LLKII 1703
Query: 424 NSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPSDGSVLKFS 481
+ +L+ SK+EAGK+ L V E++ D +++ P+A RKG+E+ ++DP +
Sbjct: 1704 DDLLNFSKLEAGKVTLDMGPLVVEEVIADTIEILCPLATRKGLELAYIVDPDVPAT---- 1759
Query: 482 KVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCL 541
V D +++QIL+NLL NA+KFT G + ++ +
Sbjct: 1760 -VIADSSRVRQILTNLLGNAIKFTHHGGVEIKCHLD------------------------ 1794
Query: 542 FYKNKKARGDLEAVNAAQRDEN-AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--- 597
L+A + ++D N + FEV DTG GI E+++ +FE + Q+ G
Sbjct: 1795 --------NSLDAADQLKKDNNDCIRLKFEVTDTGIGICPEEQQRLFEPFSQLDGGTTRK 1846
Query: 598 -GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I LVRLM GDI + K E G+ F F V +
Sbjct: 1847 YGGTGLGLSICLQLVRLMAGDIGVESKP--EMGSNFWFTVIV 1886
Score = 79.7 bits (195), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 16/136 (11%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K +L+A+D+++ R++ + L LG +VEA +GE A+Q+ + QR P +Y
Sbjct: 2068 KSVLIAEDNLVARKLLKQQLEKLGFSVEAASDGEEAIQMYK-----QR--------PPNY 2114
Query: 1059 I---LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D MP +G EAT++IR EK+ +PI+ALTA I ++AGMD +L
Sbjct: 2115 FSLAFFDHHMPKCDGVEATKRIRSLEKKTGCRLPIVALTADIQASAKQVCVDAGMDDYLT 2174
Query: 1116 KPLNRDHLMEAIKYLH 1131
KPL +L ++ L+
Sbjct: 2175 KPLVPKNLAATLRQLY 2190
>gi|428216794|ref|YP_007101259.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427988576|gb|AFY68831.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 797
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 140/290 (48%), Gaps = 63/290 (21%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN----LRQMNVCANDLLGLLNS 425
KSL AN SH+IR + + G+ EL G++L + + + + LL L+N
Sbjct: 270 KSLFLANMSHEIRTPMNAVLGMTELML-----GTDLTPEQFDFVENIRISGDSLLNLINE 324
Query: 426 ILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPSDGSVLKFSKV 483
ILD SK+EAG+MQL FD+ +E+V L A KG+E+ ++DP+ +V
Sbjct: 325 ILDLSKLEAGEMQLERLSFDLVSCVEEVATLLAAQAHNKGLEITTLIDPAIP-----WRV 379
Query: 484 KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFY 543
GD +L+QIL+NLL NA+KFT+ G +++
Sbjct: 380 SGDSARLRQILTNLLGNAIKFTNAGEVAIE------------------------------ 409
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GG 599
VN + + ++ F V DTG GI + + +F + QV GG
Sbjct: 410 -----------VNILSQQHDLIKLAFAVIDTGIGISQPNQDKLFMPFSQVDASTTRRYGG 458
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNN 649
TGLGL I + LV LMGG+I V+ E GE GT F FN+ + +A+ D N
Sbjct: 459 TGLGLAICKQLVHLMGGEIG-VESELGE-GTRFWFNLPFDLHQAAQPDFN 506
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 78/129 (60%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV-RSGLNDQRDLGAPHILPYDY 1058
KIL+A+D+++ ++VA L LG + +NG+ LQL+ R+ YD
Sbjct: 668 KILLAEDNLVNQKVALKMLEKLGYKADVAQNGQQVLQLMARTN--------------YDL 713
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
ILMDC+MP+++GY T++IR E N+ H I+A+TA+ E+ K ++AGMD ++ KP+
Sbjct: 714 ILMDCQMPLLDGYATTQEIRNREGENR-HTVIVAMTANAMKEDRQKCLDAGMDDYISKPV 772
Query: 1119 NRDHLMEAI 1127
++ + + +
Sbjct: 773 SKKDIQDIL 781
Score = 40.4 bits (93), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK+ LV DD+ R+ + V +NG +AL ++R + +
Sbjct: 516 LAGKRFLVVDDNANSRQAIVRQAANWDVVVAEADNGGSALAMLRESVQTEA--------T 567
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD +L+D + M+G + +I+ EE + ++ ++ +T G A ++ H+
Sbjct: 568 YDLVLIDSVLGDMSGLDLAAQIKAEEALS--NLQLVFITRSNQGSLARLALDRYFADHMT 625
Query: 1116 KPLNRDHLMEAIKYL 1130
KP+ L E ++++
Sbjct: 626 KPVKLSKLAETLRHV 640
>gi|406879817|gb|EKD28312.1| hypothetical protein ACD_79C00343G0002 [uncultured bacterium]
Length = 652
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 148/288 (51%), Gaps = 55/288 (19%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E+ +AE + KS AN SH+IR + GI G+I L ++ ++ NL + CA+
Sbjct: 263 ESIIKAESANKAKSEFLANMSHEIRTPMNGIIGMIGLT-LDTELSAQQRENLETVKQCAD 321
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-----P 472
L+ L+NSILD SK+EAGK++L + F++ ++ + + + KG V+D P
Sbjct: 322 SLMNLINSILDLSKIEAGKLELKYDVFNINNTIDGIFKILNVQVALKGNTFVIDVHPEVP 381
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
S+ + GD ++++Q+L NLL NA+KFT EG +++ ++G S +
Sbjct: 382 SN--------LIGDELRIRQVLVNLLGNAIKFTEEGQVNL--------SVGIQSKQNKSD 425
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+++ + E F++ D+G GIP++K T+F+++ Q
Sbjct: 426 EYIKEV---------------------------ELYFKISDSGIGIPEDKIHTIFDSFTQ 458
Query: 593 V----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
V K GTGLGL I + L+ +MGG+I V+ + G G+ F F +
Sbjct: 459 VDGSSKRRYAGTGLGLTISKKLINMMGGEIG-VESQLG-NGSTFYFTL 504
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 14/133 (10%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R K+L+A+D+++ R++A L G VE NG+ ++ ++ +
Sbjct: 527 RPLKVLLAEDNLINRKIAVAILNKYGYKVETAVNGQEVIEFLKRE-------------KF 573
Query: 1057 DYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D ILMD +MP+M+G EAT IR EK IPIIALTAH E+ K I+AGM+ +
Sbjct: 574 DVILMDVQMPVMDGLEATLIIRNSNEKLLDSQIPIIALTAHAFEEDKAKFIKAGMNSFIS 633
Query: 1116 KPLNRDHLMEAIK 1128
KP N++ L+ I+
Sbjct: 634 KPFNKEQLVHEIE 646
>gi|254457575|ref|ZP_05071003.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
gi|373867958|ref|ZP_09604356.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|207086367|gb|EDZ63651.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
gi|372470059|gb|EHP30263.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
Length = 736
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 149/287 (51%), Gaps = 55/287 (19%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
++AE + KS AN SH+IR + GI G+ L +E + +++++ A LL
Sbjct: 279 KKAEDATKIKSEFLANMSHEIRTPMNGILGMTHLA-LETDLNDKQRNYIQKIDNSAKSLL 337
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
G++N ILD SK+EAGK+ + + DF++ E++E+V+ + A K +++ ++ D ++ K+
Sbjct: 338 GVINDILDFSKIEAGKLSIEKADFNMSEVIENVIHVVELKADEKNLKLTVN-YDKNISKY 396
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
GD ++L+QIL NLL NAVKFT G +S+ +KK S
Sbjct: 397 --FYGDSLRLRQILINLLGNAVKFTDSGEVSI--SLKKIS-------------------- 432
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEG 596
K R F FEV DTG G+ +EK+ +F+++ Q +
Sbjct: 433 ------KDR-----------------FRFEVSDTGIGLSQEKQSKLFKSFSQADGSITRK 469
Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
GGTGLGL I + LV L+GG I + KEN G+ F F + L +E+
Sbjct: 470 YGGTGLGLSISKQLVELLGGKIWVESKEN--IGSKFIFEIDLEEKES 514
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 15/130 (11%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
K L G IL+ +D+ M + + L+H G ++ NG+ A++ N D
Sbjct: 533 KTLAGSSILLVEDNAMNQEIVLGILQHSGINIDIANNGKEAIE----KYNQDPD------ 582
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
Y+ ILMD +MP+MNGYEAT+ IRE+ K IPIIALTA+ E++ K+ ++ H
Sbjct: 583 -KYELILMDLQMPVMNGYEATKVIREKNK----EIPIIALTANAMKEDSKKSETVLINEH 637
Query: 1114 LGKPLNRDHL 1123
+ KP++ + L
Sbjct: 638 ISKPIDIEKL 647
>gi|452836540|gb|EME38484.1| hypothetical protein DOTSEDRAFT_75869 [Dothistroma septosporum NZE10]
Length = 1427
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 149/304 (49%), Gaps = 58/304 (19%)
Query: 326 VGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAAL 385
VGV + + +A+ A++ A L+ Q A ++A S KS AN SH+IR +
Sbjct: 762 VGVSMDITELREAAAQVAKRNQE-NARLMAQSVAAKEA---SKMKSQFLANMSHEIRTPI 817
Query: 386 AGITGLIELCYVEAGPGSELETNLRQ----MNVCANDLLGLLNSILDTSKVEAGKMQLIE 441
AG+ G+ EL + EL R+ + AN LL ++N ILD SKVE+G++ + E
Sbjct: 818 AGVIGMSELLLDDDS--GELTKEQRECAENIQRSANGLLTVINDILDFSKVESGRLDIEE 875
Query: 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNA 501
FD+ ++ DV + A RKG++ + D L+ KV GD +L+Q+++NLL+N+
Sbjct: 876 VQFDLSVVIRDVNKMLSFAAERKGLKYI---DDIQQLQSWKVMGDPGRLRQVMTNLLTNS 932
Query: 502 VKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRD 561
+KFTSEG ++++ V A +
Sbjct: 933 IKFTSEGSVAMK-----------------------------------------VKAQKET 951
Query: 562 ENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGD 617
+ +E F V+DTG GI +E RK +F+ + Q GGTGLGL I ++LV LM G
Sbjct: 952 HDMVEVHFTVEDTGIGIEEEVRKRLFKPFSQADSSTARRFGGTGLGLTISKNLVELMHGQ 1011
Query: 618 IEIV 621
I +
Sbjct: 1012 ISLT 1015
Score = 67.4 bits (163), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LV +D+ + +++A +R LG V A NG+ AL + + +Q P D IL
Sbjct: 1114 VLVVEDNAINQQIALKTIRKLGFPVRAVWNGKEALDYLSAPSKEQ-----PRP---DIIL 1165
Query: 1061 MDCEMPIMNGYEATRKIREEE----KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
MD +MPIM+GY+AT IR + PI+A+TA + +K AGMD +L K
Sbjct: 1166 MDVQMPIMDGYKATYTIRNAQPFAHNPEMQGTPIVAMTASAIQGDREKCQAAGMDDYLAK 1225
Query: 1117 PLNRDHL 1123
P+ + +L
Sbjct: 1226 PVKKPNL 1232
>gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
35110]
gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
35110]
Length = 1629
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 147/289 (50%), Gaps = 27/289 (9%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMN 413
+EA ++A R + K+ AN SH+IR A+ G+TGL+ + A +ET +
Sbjct: 915 IEAREEALRAAQAKAEFLANMSHEIRTPMNAVIGMTGLLLDTPLTAEQREYVET----IR 970
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL ++N ILD SK+E+GK++L + F + +E+ +D+F A K +E+V
Sbjct: 971 SSGDALLTVINDILDFSKIESGKLELEQYPFTLRNAIEECIDIFSATAAEKHLELVYFIH 1030
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ +KV GD +L+QIL NL+SNAVKFT G + + +++P R
Sbjct: 1031 EKVP---TKVSGDVTRLRQILVNLVSNAVKFTKSGEVVLEVQLQQP-----------REQ 1076
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+F+ + + + Q D+ F V DTG GIP ++ + +F ++ QV
Sbjct: 1077 NADERLMVFHDHDDDKYNYPQAALQQFDDKKCTLHFTVRDTGIGIPADRLERIFHSFSQV 1136
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + L LM G + V+ E G +G+ F F + L
Sbjct: 1137 DASTTRKYGGTGLGLTISKHLCELMNGKM-WVESELG-KGSTFHFTITL 1183
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 18/138 (13%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
PLR IL+A+D+++ +++ L +G + NG ++ ++S
Sbjct: 1344 PLR---ILIAEDNVVNQKLVLRILEKVGYRADVAANGAEVIEALKSK------------- 1387
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
YD ILMD +MP M+G ATR I + R + IIA+TA+ + + +EAGMD +L
Sbjct: 1388 TYDLILMDVQMPEMDGLTATRYICQNWPRLERPF-IIAMTANAMKGDREACLEAGMDDYL 1446
Query: 1115 GKPLNRDHLMEAI-KYLH 1131
KP+ D L +A+ K+ H
Sbjct: 1447 SKPVRFDDLQKALDKWGH 1464
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 14/157 (8%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACEN 1030
G+GS+ + +E + + L GK L+ DD+ RR+ + G + +
Sbjct: 1172 GKGSTFHFTITLERLPDTKGEYSSKLAGKHALIVDDNATNRRILSLQSATWGMSSHTVGS 1231
Query: 1031 GEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPI 1090
G+ AL+L+ SG++ +D ++D MP M+G ++R+ + +P+
Sbjct: 1232 GKNALELIHSGMH------------FDVGILDFHMPEMDGLMLAMELRKLPQTQD--LPL 1277
Query: 1091 IALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ LT+ + E +T+ G L KP+ + L + +
Sbjct: 1278 VMLTSAGNRETVSETVGVGFSAFLNKPIKQSQLYDVL 1314
>gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PAb1]
gi|416881857|ref|ZP_11921716.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
152504]
gi|334835543|gb|EGM14411.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
152504]
Length = 918
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 150/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE+ E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDESGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|407683442|ref|YP_006798616.1| sensor protein [Alteromonas macleodii str. 'English Channel 673']
gi|407245053|gb|AFT74239.1| putative sensor protein [Alteromonas macleodii str. 'English
Channel 673']
Length = 1260
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 141/293 (48%), Gaps = 55/293 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE-LETNLRQMNVC 415
+EATQ+A + S KS +N SH++R L G+ G L ++ P +E E + M +
Sbjct: 501 VEATQEARKASSVKSSFISNISHEMRTPLNGVVG--SLSLLKCQPLNEKAEQLVSMMEIS 558
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
N+L L+N +LD SK+EAGK+ + + FD L+E + +F A KG+++++D +
Sbjct: 559 CNNLSVLINDVLDLSKIEAGKLDINNQYFDPLALIESIAKVFAVKAAFKGLQLLVDTTG- 617
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
L ++ D ++ QILSNLL+NA+KFT EGHI ++A +
Sbjct: 618 --LPPVEINSDPHRINQILSNLLNNAIKFTEEGHIKLQASL------------------- 656
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+ D + F V DTG GI +E + +F + Q
Sbjct: 657 ----------------------SDVDAGTQQLHFSVCDTGVGIAQENQPKLFTAFTQADA 694
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
V GGTGLGL I + L +LMGGDI N E F+ F+ + E +
Sbjct: 695 SVATQYGGTGLGLSICKQLSQLMGGDITF----NSEVDIGSTFSFFVTLPETT 743
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 17/164 (10%)
Query: 969 SSGEGSSRYKQTEIEEEDG--ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVE 1026
SSG+G K +I +++G + ++ Q + +L+ DD+M+ R VA+ L L +
Sbjct: 893 SSGKG----KAEDISDDEGAADDTEQQLSIENANLLIVDDNMINREVAKGVLESLPVKLF 948
Query: 1027 ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV 1086
C +GE + + + R + + ILMDC+MP MNGY+ATR IR E K +
Sbjct: 949 TCSDGEEVVAFLTKCESKGRRIHS--------ILMDCQMPNMNGYDATRAIR-EGKAGAM 999
Query: 1087 H--IPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
H +PIIA+TA+ E +K +EAGMD KP+ D L+ +K
Sbjct: 1000 HKDVPIIAMTANAMLGEKEKCLEAGMDDFATKPVMADVLIPKVK 1043
>gi|162461250|ref|NP_001104867.1| histidine kinase3 [Zea mays]
gi|38347688|dbj|BAD01585.1| histidine kinase 3 [Zea mays]
Length = 1201
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 37/305 (12%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E QAE + KS A SH+IR + G+ G++++ +EL+T + V A
Sbjct: 585 ELKGQAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM-----DTELDTTQQDFVVTAQ 639
Query: 418 D----LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ L+ L+N +LD +K+E+G+++L FDV ++L++V+ LF+ + KG+E+ + S
Sbjct: 640 ESGKVLINLINEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYEKSQAKGIELAVLVS 699
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRA-CVKKPSAIGNPSLSSSRH 532
D + GD + +QI++NL+ N++KFT +GHI V+ VK+ S GN S H
Sbjct: 700 DQVP---DVLIGDPWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELSRKGNNFCDVSAH 756
Query: 533 G---FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEF------------TFEVDDTGKG 577
S + + + LE ++ + EN F V+DTG G
Sbjct: 757 NREILYDSDNSMLWNTLSG---LEVADSWRSLENFTMFKNSNGETDTIRLAVRVEDTGIG 813
Query: 578 IPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFR 633
I K+ + +F ++Q GGTG+GL I + LV LMGG+I K G+ F
Sbjct: 814 ITKDAQMRIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSG--VGSTFS 871
Query: 634 FNVFL 638
F
Sbjct: 872 FTAIF 876
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 30/156 (19%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q L GK+ILV DD+ + R+VA +L+ G+TV ++G A+ +++ PH
Sbjct: 1051 QSVLTGKQILVVDDNAVNRKVAAGSLKKYGSTVTCVDSGSDAIDMLK----------PPH 1100
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEK------------------RNQVHIPIIALT 1094
+D MD +MP M+G+EATR IR EK + H+PI+A+T
Sbjct: 1101 --TFDACFMDVQMPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMT 1158
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
A + +K ++ GMD ++ KP L A+ +
Sbjct: 1159 ADVIQATFEKCMQCGMDGYVSKPFEEQQLYSAVAHF 1194
>gi|418591976|ref|ZP_13155856.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
gi|375049177|gb|EHS41684.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
Length = 919
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTXRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
Query: 981 EIEEEDGERSQA---QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
E + G S+A ++P ILVA+D+ + + V L G V NG AL
Sbjct: 769 ERRRQPGRSSEAAPDERPPDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD- 827
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAH 1096
L D + ILMD EMP M+G+EATR IR EE+ + +PI+ALTAH
Sbjct: 828 --EYLRDPNGI--------QLILMDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAH 877
Query: 1097 ISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
I E IEAGMD +LGKP++R L ++ L
Sbjct: 878 ILDEHRRAGIEAGMDAYLGKPVDRAELYATLERL 911
>gi|452963589|gb|EME68653.1| PAS/PAC sensor hybrid histidine kinase, partial [Magnetospirillum
sp. SO-1]
Length = 956
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 138/301 (45%), Gaps = 53/301 (17%)
Query: 344 RKEMHLCASLIKQMEAT----QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEA 399
R + HL + +QM++ ++AE + KS AN SH++R L + G +L +
Sbjct: 473 RHKNHLEELVQEQMQSVMLLLRKAEEANSAKSTFLANMSHELRTPLTSVIGFSQLMAEDM 532
Query: 400 GPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHP 459
L +N N LL L+N +L+ SK+EAG M L ++G+L+E VV++ P
Sbjct: 533 TLTEGQRRKLSTINRSGNHLLTLINDVLELSKIEAGGMHLEVRPTNIGDLIESVVEMMRP 592
Query: 460 VAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
A KG+++ + SD + + D KL+Q+L NLLSNAVKFT G I +
Sbjct: 593 RAEHKGLQLTVRTSDLP----AGIAADATKLRQVLLNLLSNAVKFTERGRIGLE------ 642
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
V A D + V D+G GI
Sbjct: 643 -----------------------------------VAATDADPGKVRLDVAVSDSGIGIS 667
Query: 580 KEKRKTVFENYVQ--VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
E + +FE +VQ GTGLGLGI + VR+MGGD+ + + + G+ FRF++
Sbjct: 668 GEDQARIFEPFVQAGAANSHAGTGLGLGISRQYVRMMGGDLAV--ESWPKLGSLFRFSLV 725
Query: 638 L 638
Sbjct: 726 F 726
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILVA+D+ +R + + L LG TV +G A+ V+S D DL I
Sbjct: 753 RILVAEDNADIRVLLKTLLVPLGFTVMEAPDGAEAVAAVQS---DSPDL----------I 799
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+MD MP+M+G EATR+IR Q I I LTA E+ T+ AG D L KP
Sbjct: 800 IMDWRMPVMDGVEATRRIRALTGIRQPRIVI--LTASAFEEQRLITLAAGADDFLRKPFE 857
Query: 1120 RDHLM 1124
D L+
Sbjct: 858 PDDLL 862
>gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
gi|418588737|ref|ZP_13152735.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|421518003|ref|ZP_15964677.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PAO1]
gi|375040396|gb|EHS33172.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|404347485|gb|EJZ73834.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
Length = 919
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
Query: 981 EIEEEDGERSQA---QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
E + G S+A ++P ILVA+D+ + + V L G V NG AL
Sbjct: 769 ERRRQPGRSSEAAPDERPPDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD- 827
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAH 1096
L D + ILMD EMP M+G+EATR IR EE+ + +PI+ALTAH
Sbjct: 828 --EYLRDPNGI--------QLILMDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAH 877
Query: 1097 ISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
I E IEAGMD +LGKP++R L ++ L
Sbjct: 878 ILDEHRRAGIEAGMDAYLGKPVDRAELYATLERL 911
>gi|119357937|ref|YP_912581.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
DSM 266]
gi|119355286|gb|ABL66157.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
DSM 266]
Length = 985
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 153/313 (48%), Gaps = 58/313 (18%)
Query: 336 VFKSARAARKEM-----HLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITG 390
+ + A AR E+ L S+I+ E + A + + KS AN SH++R + G+ G
Sbjct: 289 LIEDANLARNELLETNRKLEESVIRTQEMARAASKANEAKSQFLANMSHEVRTPMNGVIG 348
Query: 391 LIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELL 450
+ +L ++ E + + +LL ++N ILD SK+EA ++ L DFD+ ELL
Sbjct: 349 MSDL-LLDTSLDPEQRKYVETIISSGKNLLSIINDILDFSKIEANRLDLDVVDFDLLELL 407
Query: 451 EDVVDLFHPVAMRKGVEVVLDPSDGSVL-KFSKVKGDRVKLKQILSNLLSNAVKFTSEGH 509
EDV + A +KG+E+ L GS L +F ++GD+ +++QIL NL+ NAVKFT G
Sbjct: 408 EDVCGILGLQAQQKGLELTL--VTGSFLPRF--LRGDQARIRQILVNLVGNAVKFTHSGE 463
Query: 510 ISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTF 569
+ V A ++ +RD + +
Sbjct: 464 VVVCAMAQE----------------------------------------ERD-SQVTIRL 482
Query: 570 EVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN 625
V DTG GIP+E K VFE ++Q + GGTGLGL I L + MG I I++ N
Sbjct: 483 LVRDTGIGIPREMMKAVFEPFIQADGSTRRKYGGTGLGLAISNQLAKKMGSTI-ILESTN 541
Query: 626 GERGTCFRFNVFL 638
GE G+ F F+V L
Sbjct: 542 GE-GSVFWFDVVL 553
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 15/133 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+ +DS + ++VA LR +G + + +G+AA+ +R + YD +L
Sbjct: 726 ILLVEDSPVNQQVAVAMLRKIGYSPDVVASGKAAIDAMRCKV-------------YDLVL 772
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MDC+MP M+GYEATR IR + IP++A+TAH + +K + AGMD +L KP+
Sbjct: 773 MDCQMPEMDGYEATRIIRTDRTLCGTPDIPVVAMTAHAMIGDREKCLSAGMDDYLPKPVC 832
Query: 1120 RDHLMEA-IKYLH 1131
+ L +KYL
Sbjct: 833 KSDLNAVLLKYLQ 845
>gi|411009247|ref|ZP_11385576.1| hypothetical protein AaquA_05921 [Aeromonas aquariorum AAK1]
Length = 1322
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 135/286 (47%), Gaps = 52/286 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A Q+AE + KS AN SH+IR + I GL L + P + L +++ A
Sbjct: 699 QAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKRDT-PDHTQQERLEKIDNAAQ 757
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK++AGKM L + DF + +L++V L A KG+ +++D D
Sbjct: 758 HLLTIINDILDLSKIDAGKMALEQSDFSLTAMLDNVSALMSEQARAKGLTIIVDIGDTP- 816
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ V GD +L+Q L N +NA+KFT +G +++R V+ +G+ L
Sbjct: 817 ---AWVHGDITRLRQALLNYTANAIKFTEQGSVTLR--VRPERQLGSDYL---------- 861
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY----VQV 593
FEV+DTG GI E+ + +F+ + V
Sbjct: 862 -----------------------------LRFEVEDTGIGISPEQTEKLFQAFEQADVST 892
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL I L LMGGD+ + +G+CF F L+
Sbjct: 893 TRKYGGTGLGLAITSRLATLMGGDVGVSSTLG--KGSCFWFTARLS 936
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ +D+ + R V L + G +E NG+ AL V P+D I
Sbjct: 963 RVLLVEDNAINREVVLELLGNSGLVIETAVNGQEALARVSQH-------------PFDLI 1009
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP+M+GY ATR IR ++V PI+ALTA E+ AGM+ + KP+
Sbjct: 1010 LMDIQMPLMDGYSATRAIRALPGWDKV--PILALTASAFEEDRRACESAGMNDFIAKPVT 1067
Query: 1120 RDHLMEAIK 1128
L A++
Sbjct: 1068 PTRLFAALQ 1076
>gi|428215970|ref|YP_007089114.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004351|gb|AFY85194.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1277
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 154/318 (48%), Gaps = 25/318 (7%)
Query: 336 VFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRA---ALAGITGLI 392
+ + RAAR ++ +KQ A + AE + KS A SH+IR A+ G+TGL+
Sbjct: 688 LLERERAARSQLAEQNQSLKQ--ARESAEVANRAKSEFLATMSHEIRTPMNAVIGMTGLL 745
Query: 393 ELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLED 452
++ E + + + LL ++N ILD SK+E+GK++L F++ +E+
Sbjct: 746 ----LDMNLTEEQRDYIDTIRTSGDALLTIINDILDFSKIESGKLELENHPFNLQTCIEE 801
Query: 453 VVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISV 512
+DLF P A KG+E++ V K+ D +L+QIL NL+ N+VKFT G I V
Sbjct: 802 ALDLFAPKAAEKGLELLY---QIEVRTPQKIISDVTRLRQILVNLIGNSVKFTHTGEIVV 858
Query: 513 RACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVD 572
+ ++ +S+ + N L+ + Q A EF F +
Sbjct: 859 SVNATRLTS------PTSQAKLATPLVSADPGNGDKPSGLQPRSPDQSPPVAYEFQFSIR 912
Query: 573 DTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGER 628
DTG GIP +R +F + QV GGTGLGL I + L LMGG + I +E
Sbjct: 913 DTGIGIPSHRRDRLFLPFSQVDASTTRQFGGTGLGLAICKRLSELMGGRMWIESEEG--V 970
Query: 629 GTCFRFNVFLAIREASAN 646
G+ F F + +A+ AN
Sbjct: 971 GSTFYFTL-IALSNPKAN 987
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 18/137 (13%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q PLR IL+A+D+++ ++VA L +G + NG L+ + QR
Sbjct: 1151 QIPLR---ILLAEDNIVNQKVALRILDRMGYRADVANNGLEVLEAL------QR------ 1195
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRN-QVHIP-IIALTAHISGEEADKTIEAGM 1110
L YD ILMD +MP M+G EATR+I ++ Q++ P IIA+TA+ + + + AGM
Sbjct: 1196 -LSYDVILMDVQMPEMDGLEATRQICKKYGEGLQLNKPKIIAMTANAMQGDREICLAAGM 1254
Query: 1111 DVHLGKPLNRDHLMEAI 1127
D ++ KP+ + L++ +
Sbjct: 1255 DDYITKPIRLEELIKVL 1271
>gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1625
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 131/463 (28%), Positives = 196/463 (42%), Gaps = 114/463 (24%)
Query: 336 VFKSARAARKEMH------LCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGIT 389
V+ S R R H L S + EA +A+ + KS AN SH+IR + G+
Sbjct: 884 VYDSGRIVRVAGHIMDITELKQSQLDLQEARDKAQEATRAKSEFLANMSHEIRTPMNGVI 943
Query: 390 GLIELCY-VEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGE 448
G+ +L E P E + + LL L+N ILD SK+EAG+++L DF++
Sbjct: 944 GMTDLLMDTELRP--EQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVDFNLRY 1001
Query: 449 LLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG 508
LLED+ L A KG+E++ P D V ++V+GD +L+QIL+NL+ NA+KFT +G
Sbjct: 1002 LLEDLASLMAVRADEKGLELICLP-DPDVP--AQVQGDPGRLRQILTNLVGNAIKFTHQG 1058
Query: 509 HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT 568
+ VR + SA D+ + FT
Sbjct: 1059 EVVVRVQRSEVSA---------------------------------------DDVLLLFT 1079
Query: 569 FEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKE 624
V DTG GIP++K +F + QV GGTGLGL I + L +MGG++ V E
Sbjct: 1080 --VQDTGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVG-VQSE 1136
Query: 625 NGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSI 684
G RG F F L +++ + P P+L
Sbjct: 1137 YG-RGCKFWFTARLTLQKKQ-------------------------------EEPLPAL-- 1162
Query: 685 RTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKR 744
P H G H++++ NE I +K +E G+ V S L R
Sbjct: 1163 -----------PQDLH-GEHILIVDDNETNLEILKKQLEAWGVEVEQASGGHEALRILDR 1210
Query: 745 LKSKFGS-------IHSPHSSLGKSDLSSRSDSESASFKEVPL 780
+ S+ S +H P ++ +L R +S F ++PL
Sbjct: 1211 VYSEGNSFAMAILDMHMP--AMDGGELGQRI-KKSGKFNDLPL 1250
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 60/209 (28%)
Query: 961 SVLLKTGNSSGEGS-SRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLR 1019
+VL G + G +R++ EI+ R Q++ +LVA+D+ + ++VA L
Sbjct: 1289 TVLSSAGKAPGHSIITRHQAREIK-----RQQSELIKFKGHVLVAEDNPVNQKVAVGLLN 1343
Query: 1020 HLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR- 1078
+G + + + G A++ L +Q YD +LMD +MP M+G EAT++IR
Sbjct: 1344 KMGLSADIVDTGLKAVE----ALQNQ---------SYDLVLMDVQMPEMDGLEATQEIRR 1390
Query: 1079 ------EEEKRN---------------QVH-------------------IPIIALTAHIS 1098
E E+R + H IPIIA+TA
Sbjct: 1391 MEHGTEEREQRTGDRRWESQPLNPSTPEYHNPSIPKSFNPKIPQSLNPKIPIIAMTAGAM 1450
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ D+ EAGMD ++ KP++ L++ +
Sbjct: 1451 NQDRDRCFEAGMDDYVSKPVSHQELLKVL 1479
Score = 43.5 bits (101), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G+ IL+ DD+ + + L G VE G AL+++ ++
Sbjct: 1166 LHGEHILIVDDNETNLEILKKQLEAWGVEVEQASGGHEALRILDRVYSEGNSFAMA---- 1221
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI--EAGMDVH 1113
++D MP M+G E ++I++ K N +P++ LT+ G D I E G + +
Sbjct: 1222 ----ILDMHMPAMDGGELGQRIKKSGKFND--LPLVMLTS--LGRPGDAKIFEEQGFNAY 1273
Query: 1114 LGKPLNRDHLMEAI 1127
L KP+ + L + +
Sbjct: 1274 LNKPVRQSELFDTL 1287
>gi|116051482|ref|YP_789685.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
gi|421173312|ref|ZP_15631061.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
gi|115586703|gb|ABJ12718.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
gi|404535931|gb|EKA45588.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
Length = 918
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|390949113|ref|YP_006412872.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390425682|gb|AFL72747.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1524
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 142/309 (45%), Gaps = 51/309 (16%)
Query: 342 AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
A R HL + E +AE S+ KS AN SH+IR + G+ G+ L +E
Sbjct: 832 ADRLNEHLAQQTVFAREQAARAEMASVAKSEFLANMSHEIRTPMNGVIGMTGLL-LETDL 890
Query: 402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
E + LL L+N ILD SK+EAGK+ L DFD+ LED A
Sbjct: 891 DDEQRHFAEVVRASGESLLRLINDILDFSKIEAGKLDLEMLDFDLSLSLEDFATALALRA 950
Query: 462 MRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
KG+E + D +D V F ++GD +L+QIL+NL NA+KFT G +++R V +
Sbjct: 951 QEKGLEFLCD-ADPEVPAF--LRGDPGRLRQILTNLAGNAIKFTPSGEVAIRVSVLE--- 1004
Query: 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
+R E+ + F V DTG GIP++
Sbjct: 1005 -------------------------------------ERTEDVL-LRFAVRDTGIGIPED 1026
Query: 582 KRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
K +F+ + QV GGTGLGL I + L LM G++ ++ + +G+ F F
Sbjct: 1027 KLGLLFDKFSQVDASTTRQYGGTGLGLAISKQLAALMDGEVGVISQAG--KGSEFWFTAR 1084
Query: 638 LAIREASAN 646
LA + SA+
Sbjct: 1085 LAKQPESAH 1093
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 73/130 (56%), Gaps = 16/130 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D+ ++VA L+ +G +A NG A+ + S +PYD +
Sbjct: 1259 RILLAEDNTTNQQVALGILKKMGLHADAVANGAEAVTALAS-------------IPYDLV 1305
Query: 1060 LMDCEMPIMNGYEATRKIREEEK--RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
LMD +MP+M+G EATR IR RN +PIIA+TA + ++ ++AGM+ ++ KP
Sbjct: 1306 LMDVQMPVMDGLEATRAIRASSSAVRNP-GLPIIAMTAGAMRGDQEQCLDAGMNDYVSKP 1364
Query: 1118 LNRDHLMEAI 1127
++ L E +
Sbjct: 1365 VSPAILAEVL 1374
>gi|336427305|ref|ZP_08607309.1| hypothetical protein HMPREF0994_03315 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010158|gb|EGN40145.1| hypothetical protein HMPREF0994_03315 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 538
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 175/368 (47%), Gaps = 72/368 (19%)
Query: 306 LVSLVHRTS----KRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQ 361
+VS R S K A +L+ + VG + +L F+F +++M A
Sbjct: 106 VVSAAERYSEKRVKSAKEILVRLNVGFI--LLVFLFLVYGHWQRKMQ---------HALD 154
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLG 421
AE+ S KS ++ SH+IR + GI G+ E+ +L L ++++ + LL
Sbjct: 155 MAEKASQAKSEFLSSMSHEIRTPMNGIIGMTEIARRSLDNRDKLADCLDKIDLSSGYLLT 214
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFS 481
L+N ILD S++E+GK++L E F + E+L+ V +F A G+E+ + D S+
Sbjct: 215 LINDILDMSRIESGKVELAHEPFRITEVLDRVYVMFKQKAEDGGIELSVKYEDQSL---E 271
Query: 482 KVKGDRVKLKQILSNLLSNAVKFT-SEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
V GD ++L QIL N++SNA+KFT S G +++ AC K
Sbjct: 272 HVTGDELRLSQILVNIVSNALKFTPSGGRVTLEACGK----------------------- 308
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEG 596
A+ D+ AMEF + DTG GI +E + +FE + Q
Sbjct: 309 ----------------ASGTDKVAMEFL--ITDTGSGISREFQAKLFEPFEQEQSVTSRQ 350
Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL----AIREASANDNN--T 650
GTGLGL I Q+ ++MGG+I V+ + GE G+ F+ +V L RE N +N
Sbjct: 351 YSGTGLGLAISQNFSKMMGGEI-TVESKPGE-GSRFKVSVLLDQDKESRETGRNSDNPSK 408
Query: 651 QGEKELAG 658
Q LAG
Sbjct: 409 QSPDSLAG 416
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 22/168 (13%)
Query: 971 GEGSSRYKQTEIEEEDGERSQA---------QKP--LRGKKILVADDSMMLRRVAEINLR 1019
GEGS R+K + + ++D E + Q P L G +IL+A+D+ + + L
Sbjct: 379 GEGS-RFKVSVLLDQDKESRETGRNSDNPSKQSPDSLAGSRILLAEDNPINSEIVTFLLE 437
Query: 1020 HLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079
GA V+ +G A++ A + Y +ILMD +MP+++G EA R+IRE
Sbjct: 438 SNGAQVDLAMDGREAVEKYE----------ASSVDYYQFILMDIQMPVLDGLEACRRIRE 487
Query: 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ + + II L+A+ E+ D+ ++GMD +L KP++ L+ I
Sbjct: 488 MDRPDAAGVHIIGLSANAFREDIDRARQSGMDGYLTKPVDMVKLLALI 535
>gi|169599701|ref|XP_001793273.1| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15]
gi|160705302|gb|EAT89406.2| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15]
Length = 1733
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 146/292 (50%), Gaps = 46/292 (15%)
Query: 350 CASLIKQMEATQQAERKSMN-KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN 408
A+ I + +Q +++M+ KS +N SH+IR L GI+G++ +LE +
Sbjct: 1095 TATDINDHKLLEQTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDSILNAEQLE-H 1153
Query: 409 LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
+ + + LL L+N ILD SKVEAG ++L E + L+E+V DL +A++KG+E+
Sbjct: 1154 VNIIKSSTDSLLNLINDILDLSKVEAGMIKLSMEWLHLPSLIEEVNDLSMGLAIQKGLEL 1213
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
+G S VKGD+ +++Q+L N++ NA+KFTS G I VR V+ P
Sbjct: 1214 NYLVDEGVP---SMVKGDKFRIRQVLLNVVGNAIKFTSSGEIFVRCKVQSP--------- 1261
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
R G L GD E V FEV DTG+G +++ K +F+
Sbjct: 1262 -ERSGPL--------------GDNETV-----------VRFEVIDTGRGFTEQEAKFLFK 1295
Query: 589 NYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ Q+ GGTGLGL I V L GG ++ N +G+ F F +
Sbjct: 1296 RFSQIDASSTRQHGGTGLGLAISMQFVELHGGKMDARSVPN--KGSTFFFTI 1345
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDVHL 1114
Y IL D MP +GY+A ++IR+ EK++ PIIAL+A++ G+ K EAG + ++
Sbjct: 1641 YSIILCDLHMPNKDGYQACKEIRKWEKKHGYRRTPIIALSANVLGDVYAKCAEAGFNSYV 1700
Query: 1115 GKPLNRDHL 1123
KP+ L
Sbjct: 1701 TKPVEFKQL 1709
>gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 1084
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 132/268 (49%), Gaps = 53/268 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE S KS AN SH+IR + GI G+ L ++ S L Q++ AN
Sbjct: 556 AKEEAETASRAKSDFLANMSHEIRTPMNGIIGMTHLT-LQTELTSRQRDYLTQISTSANT 614
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGS 476
LL ++N ILD SK+EAGK+++ DF + ++LE+V + A KG+E++ + P
Sbjct: 615 LLRIVNDILDFSKIEAGKLEMEHADFQLEQVLEEVASIADLSAAEKGLELLSRISPDVPP 674
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
VL +GD ++L QIL NL+ NA+KFT GH+ V S++ RH
Sbjct: 675 VL-----EGDALRLSQILLNLVGNAIKFTQSGHVLV-------------SVTQERH---- 712
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+ K R F V DTG G+ E+ +FE++ Q
Sbjct: 713 -------EGSKTR-----------------LRFSVSDTGIGMTSEQIGNLFESFTQADNS 748
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEI 620
GGTGLGL I + LV LMGG+I +
Sbjct: 749 TTRRYGGTGLGLAICKRLVNLMGGEIHV 776
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 19/157 (12%)
Query: 978 KQTEIEEEDGERSQAQKP-LRGKKILVADDSMMLRRVAEINLRHLGATVEACENG-EAAL 1035
+Q + + E S A P L G ++L+A+D+ + R+VA L+ G +VE +G EA
Sbjct: 936 EQPQDRPDRAEPSAAPFPELVGARVLLAEDNAINRQVANEILQSSGVSVEPAGDGLEAVE 995
Query: 1036 QLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA 1095
+L G YD +LMD +MP M+G +ATR +RE + + ++PIIA+TA
Sbjct: 996 KLWEGG--------------YDAVLMDIQMPGMDGLKATRILREYARFD--NLPIIAMTA 1039
Query: 1096 HISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYLH 1131
H + +K++ GM ++ KP+ L+ + +++H
Sbjct: 1040 HAMNGDREKSLSVGMQDYIAKPIEPSVLLSTLARWIH 1076
>gi|86137741|ref|ZP_01056317.1| sensory box sensor histidine kinase/response regulator [Roseobacter
sp. MED193]
gi|85825333|gb|EAQ45532.1| sensory box sensor histidine kinase/response regulator [Roseobacter
sp. MED193]
Length = 810
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 136/286 (47%), Gaps = 53/286 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A AE KS AN SH+IR + GI G+ EL EA G+E L + +N
Sbjct: 424 DAKVAAESADRAKSEFLANMSHEIRTPMNGILGMAELMS-EADLGAEEREYLTTIQDSSN 482
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD S++EAG++ + DFD+ + V+L P A KG+ + +D ++
Sbjct: 483 ALLKIINDILDLSRLEAGRLAISPVDFDLRNCVAGAVNLLRPKAREKGLWMSVDFAENLP 542
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+V GD +L+QIL NL+ NAVKFTSEG + V+
Sbjct: 543 ---EQVYGDDGRLRQILVNLIGNAVKFTSEGGVDVK------------------------ 575
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
V ++D ++E V+DTG GI + + +F+ + Q +
Sbjct: 576 -----------------VTCDEQDPYSLEIA--VEDTGIGISDSQAEYIFDRFAQADAAI 616
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL I L + MGG IE+ E G+CFR V LA
Sbjct: 617 TRAFGGTGLGLTISSILAKRMGGGIELCRAR--EEGSCFRLKVQLA 660
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 16/136 (11%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G ++L+A+D+ R + + L LG + NG A+ + + +Q D+
Sbjct: 680 LAGCRMLLAEDNKTNRLLVQKYLSDLGIILSEAHNGRQAVAMCQ---QEQPDI------- 729
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
ILMD MP ++G EATR+IR + V I+ALTA+ + + + AGMD L
Sbjct: 730 ---ILMDMAMPELDGLEATREIRALNIKQPV---IVALTANAFESDREACLAAGMDYFLQ 783
Query: 1116 KPLNRDHLMEAIKYLH 1131
KP+ + L++ + L
Sbjct: 784 KPIRKSVLLQTLTMLQ 799
>gi|359458661|ref|ZP_09247224.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris sp. CCMEE 5410]
Length = 653
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 155/324 (47%), Gaps = 45/324 (13%)
Query: 330 ISMLTFVFKSARAARKEMHLCASLIKQ--MEATQQAERKSMNKSLAFANASHDIRAALAG 387
+S F+ ++ A E H A Q + A + AE ++ KS AN SH++R L
Sbjct: 140 VSDFLFLLQAKNTALNEAHKLADERAQKLVAAKEMAESANLAKSTFLANMSHELRTPLNA 199
Query: 388 ITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447
I G +L ++ + L +N LL LLN IL+ SK+EAG++ L +F++
Sbjct: 200 ILGFSQLLSRDSTLTAAHLHKLSIINNSGEHLLALLNDILEMSKIEAGQITLDPTNFNLH 259
Query: 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE 507
LE + +LF K + + S +V ++ ++ D KL+Q+L NLL NA+KFT+E
Sbjct: 260 HFLEGLYNLFQQKVFSKKITLKFQYSK-TVPQY--IQADIKKLRQVLINLLGNAIKFTNE 316
Query: 508 GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEF 567
G + ++ + L + LQ +CL
Sbjct: 317 GQVYLKVASRL-------YLDDAYSVNLQEPTCL-------------------------L 344
Query: 568 TFEVDDTGKGIPKEKRKTVFENYVQVK------EGEGGTGLGLGIVQSLVRLMGGDIEIV 621
TF V+DTG G+ +E ++ +F + Q + +G GTGLGL I + V LMGG++ I+
Sbjct: 345 TFSVEDTGPGVSEEDQEKIFHPFYQTEYGKQSHQGVHGTGLGLSISRQFVNLMGGELSIL 404
Query: 622 DKENGERGTCFRFNVFLAIREASA 645
+ N +G F F++ + + ASA
Sbjct: 405 SQLN--KGATFSFSIPVKVSTASA 426
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 23/139 (16%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D R + L +G V++ +NG+ AL++ + PH+ I
Sbjct: 446 RILVVEDHADNRCLLVTLLATIGFLVKSAQNGQEALEVCQEW--------HPHL-----I 492
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD +MP+M+G EAT++IR Q+ P IIALTA+ E+ ++ + G D L KP
Sbjct: 493 WMDIKMPLMDGLEATQQIR---AMPQIPQPVIIALTANAFDEDKERALTCGCDDFLHKPC 549
Query: 1119 NRDHLME------AIKYLH 1131
N ++E +KYL+
Sbjct: 550 NETIILEKMTQHLGVKYLY 568
>gi|93005211|ref|YP_579648.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis
K5]
gi|92392889|gb|ABE74164.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis
K5]
Length = 1169
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 142/304 (46%), Gaps = 57/304 (18%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R A EM + I+ A A S KS AN SH++R L I G I L
Sbjct: 283 RLAFDEMEMQNISIR--NARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLLARHGE 340
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
E + ++ + + LL L+N +LD SK+EAGK+ L +FD+ + + DVVD+ PV
Sbjct: 341 LNPEQDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPV 400
Query: 461 AMRKGVEV-VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
+ KG+ + VL +D + ++ GD ++LKQ+L+N++ NA+KFT G + VR
Sbjct: 401 SAEKGLRMAVLFYNDVPM----RINGDALRLKQVLTNIVGNAIKFTDSGDVVVRV----- 451
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
SL + +L V D+GKGI
Sbjct: 452 ------SLDDYQDNYL--------------------------------MISVQDSGKGIS 473
Query: 580 KEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVD--KEN-GERGTCF 632
+K +F+++ Q + GGTGLGL I + L RLMGGDI D +EN +G F
Sbjct: 474 LSDQKMLFQSFSQGDPSITRQYGGTGLGLVISKQLTRLMGGDIGFYDNMQENISNQGATF 533
Query: 633 RFNV 636
F +
Sbjct: 534 WFRM 537
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D I MD +MP M+G+EA R+IR+ E + HIPIIALTAH +E DK + +G++ ++GK
Sbjct: 795 DLIFMDIQMPRMSGHEAARQIRKIEAADS-HIPIIALTAHGLADERDKLVASGINDYVGK 853
Query: 1117 PLNRDHLMEAIK 1128
P+++ L++ ++
Sbjct: 854 PISQPQLLQVLQ 865
>gi|240141277|ref|YP_002965757.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
AM1]
gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
extorquens AM1]
Length = 698
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 137/289 (47%), Gaps = 50/289 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +AE ++ KS A SH++R L GI G+ +L ++ E T +
Sbjct: 169 EAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLL-LDTRLDPEQRTYVEAFRTSGK 227
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLGL++ ILD S++EAG++ L E FDV L+E VV+L P A KG+E+ LD +D
Sbjct: 228 ALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADD-- 285
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L +V GD +++QIL NL NA+KFT G + V SL+ S G
Sbjct: 286 LAALRV-GDADRVRQILVNLAGNAIKFTQTGGVGV-------------SLARSGEG---- 327
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+ G V+DTG GIP+E+ +FE + Q +
Sbjct: 328 ---------QGEG----------------LVLTVEDTGPGIPEERIPILFEEFEQGDDSA 362
Query: 598 G--GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GTGLGL I + LV M G IE + RG+ FR + L E +
Sbjct: 363 SHEGTGLGLAITRRLVERMNGTIEA--RSTVGRGSTFRVMLPLPAAEGA 409
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G+++L+A+D+ + +A L LGA V +G AL A P+D
Sbjct: 572 GRRVLLAEDNPINALLATKALERLGAQVIHARDGLEALA------------AAEGQGPFD 619
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
L+D MP ++G E R+IR E + ++ALTA+ E+ D AG D L K
Sbjct: 620 LALIDIRMPGLDGLETARRIRAREAETGATPLHLVALTANTGREDVDAASAAGFDGFLPK 679
Query: 1117 PLN 1119
PLN
Sbjct: 680 PLN 682
>gi|313108820|ref|ZP_07794805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
39016]
gi|386067505|ref|YP_005982809.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
NCGM2.S1]
gi|310881307|gb|EFQ39901.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
39016]
gi|348036064|dbj|BAK91424.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
NCGM2.S1]
Length = 918
Score = 124 bits (312), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|317153381|ref|YP_004121429.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
gi|316943632|gb|ADU62683.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
Length = 867
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 137/284 (48%), Gaps = 56/284 (19%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLRQMN 413
MEA AE + +K+ N SH++R L GI G+++L ++ ++T +
Sbjct: 483 MEAKHSAEAANQSKTEFLTNISHELRTPLNGILGMLQLTRETRLKPEQAEYIDTAISSSK 542
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
V LL ++N IL+ +++EAG++ L++ F E+LE + F KGVE+ +D
Sbjct: 543 V----LLNVINDILNIAQIEAGRLTLLDAPFSTNEVLETIYRFFRHSTEAKGVELTMDME 598
Query: 474 DGSVLKFSK-VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
G F K + GD V+++QIL NLL N+VKFT +GHISV A + + R
Sbjct: 599 PG----FPKTLVGDEVRIRQILFNLLGNSVKFTDQGHISVHASILP---------VTPRP 645
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
G ++ L + DTG GIP +K VFE++ Q
Sbjct: 646 G---RVTVLLV---------------------------IKDTGIGIPSDKIDYVFESFTQ 675
Query: 593 V----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
V GTGLGLGIV+SLV M G I VD E G T +
Sbjct: 676 VDGTYTRQYQGTGLGLGIVRSLVWSMNGTIA-VDSETGMGTTIY 718
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 22/191 (11%)
Query: 945 GNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLR------- 997
G G G R ++ + + + + +G G++ Y ++ G+ Q +P R
Sbjct: 686 GTGLGLGIVRSLVWSMNGTIAVDSETGMGTTIYVTLQLSLPKGD-DQVDEPPRPVLRERT 744
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G ILV +D + + L +G NGE AL++++ + +D
Sbjct: 745 GLAILVVEDDRVNQLAISRMLEKMGHFPTCTPNGEKALEMLKGSI-------------FD 791
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
+ MD +MP+M+G EATR IR V IPIIALTAH + + ++AGM+ ++ K
Sbjct: 792 CVFMDIQMPVMDGMEATRMIRTAPSLAGVASIPIIALTAHAMPADREAFLKAGMNDYVAK 851
Query: 1117 PLNRDHLMEAI 1127
P++ + L E +
Sbjct: 852 PVSFEQLAEVL 862
>gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
Length = 918
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGHERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
Length = 918
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGHERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|421179370|ref|ZP_15636962.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
gi|404547238|gb|EKA56250.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
Length = 918
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
LESB58]
gi|420138641|ref|ZP_14646539.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CIG1]
gi|421159027|ref|ZP_15618208.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
25324]
gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
LESB58]
gi|403248604|gb|EJY62162.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CIG1]
gi|404548738|gb|EKA57680.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
25324]
Length = 918
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|423196716|ref|ZP_17183299.1| PAS domain S-box protein [Aeromonas hydrophila SSU]
gi|404632170|gb|EKB28799.1| PAS domain S-box protein [Aeromonas hydrophila SSU]
Length = 1323
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 135/286 (47%), Gaps = 52/286 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A Q+AE + KS AN SH+IR + I GL L + P + L +++ A
Sbjct: 700 QAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKRDT-PDHTQQERLEKIDNAAQ 758
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK++AGKM L + DF + +L++V L A KG+ +++D D
Sbjct: 759 HLLTIINDILDLSKIDAGKMALEQSDFSLTAMLDNVSALMSEQARAKGLTIIVDIGDTP- 817
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ V GD +L+Q L N +NA+KFT +G +++R V+ +G+ L
Sbjct: 818 ---AWVHGDITRLRQALLNYTANAIKFTEQGSVTLR--VRPERQLGSDYL---------- 862
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY----VQV 593
FEV+DTG GI E+ + +F+ + V
Sbjct: 863 -----------------------------LRFEVEDTGIGISPEQAEKLFQAFEQADVST 893
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL I L LMGGD+ + +G+CF F L+
Sbjct: 894 TRKYGGTGLGLAITSRLATLMGGDVGVSSTLG--KGSCFWFTARLS 937
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ +D+ + R V L + G +E NG+ AL V P+D I
Sbjct: 964 RVLLVEDNAINREVVLELLGNSGLVIETAVNGQEALAHVSQH-------------PFDLI 1010
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP+M+GY ATR IR ++V PI+ALTA E+ AGM+ + KP+
Sbjct: 1011 LMDIQMPLMDGYSATRAIRALPGWDKV--PILALTASAFEEDRRACESAGMNDFIAKPVT 1068
Query: 1120 RDHLMEAIK 1128
L A++
Sbjct: 1069 PTRLFAALQ 1077
>gi|453064689|gb|EMF05653.1| hybrid sensory histidine kinase BarA [Serratia marcescens VGH107]
Length = 908
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 163/349 (46%), Gaps = 65/349 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++A+ + KS AN SH++R L G+ G ++ + L+ + AN+
Sbjct: 281 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTDLSATQTDY-LQTIERSANN 339
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N +LD SK+EAGK+ L F + E L++VV L P A KG+E+ LD +
Sbjct: 340 LLTIINDVLDFSKLEAGKLVLEHIPFALRETLDEVVVLLAPSAHDKGLELTLDVHNDVP- 398
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+V GD ++L+QI++NLL NA+KFT G+I +R ++K
Sbjct: 399 --EQVIGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRK-------------------- 436
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
Q D +E ++ DTG GI + ++ +F+ + Q +
Sbjct: 437 --------------------QLDRR-VEVEVQIHDTGIGISERQQSQLFQAFRQADASIS 475
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA------SANDN 648
GGTGLGL I Q LV+ MGGDI + N RG+ F F++ L + E S D
Sbjct: 476 RRHGGTGLGLVITQKLVKEMGGDICFHSQLN--RGSTFWFHITLDLNEGMLSLAPSLPDL 533
Query: 649 NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPG 697
N + + +AA T+ S + + T+SP L L PG
Sbjct: 534 NGKTLAYIESNPTAA--------QATLNMLSVTQLVITHSPTLGQLPPG 574
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 1021 LGATVEA---CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077
LG VE CE+GE AL L R+ + D ILMD +MP M+G A+ I
Sbjct: 683 LGEQVEKTLLCESGEEALALARNNV-------------LDLILMDIQMPKMDGIHASELI 729
Query: 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH 1131
R+ N PI+A+TAH + E + ++AGMD +L KP++ L + H
Sbjct: 730 RQLPHHNST--PIVAVTAHAASGEREHLLQAGMDDYLAKPIDEKMLTRVLSRYH 781
>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
Length = 916
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 54/286 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A + AE S KS A SH+IR + GI G+ EL ++ + + +
Sbjct: 258 AKESAEAASKAKSEFLATMSHEIRTPMNGILGMTELL-LQTQLNRDQQRFAETVQSSGRH 316
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD--PSDGS 476
LLG++N ILD SK+E+ M+L DFD+ +L+ED + +F A +KG+E+ P + +
Sbjct: 317 LLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKGLELAAQFIPPNRA 376
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V+GD +L+QI +NL+SNA+KFTS+G + +R + + +
Sbjct: 377 FM----VRGDSFRLRQIFANLISNAIKFTSQGEVVIRTQLCEAAG--------------- 417
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+R +L V+DTG GIP E K +F+ + Q
Sbjct: 418 -----------SRVNLRIC---------------VEDTGIGIPPEYHKKIFQQFSQADGS 451
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + L+ LMGG I I D G+ GT F+ N+ L
Sbjct: 452 TTRQYGGTGLGLTICKKLLELMGGSIHI-DSTPGQ-GTKFQINLEL 495
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 17/127 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+A+D+ + + VA+ L LG +G+ A+ L+R+ YD IL
Sbjct: 662 VLLAEDNPVNQEVAKAMLSRLGLNTVIAHDGKQAVDLIRNH-------------HYDIIL 708
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MDC+MP+M+G+EAT +IR+ + IPIIALTA+ + ++ + + AGMD L KP
Sbjct: 709 MDCQMPVMDGFEATAQIRQHLNK----IPIIALTANATEDDRTQCLNAGMDDFLSKPYTL 764
Query: 1121 DHLMEAI 1127
D L + I
Sbjct: 765 DQLQQKI 771
Score = 47.8 bits (112), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 14/162 (8%)
Query: 970 SGEGSSRYKQTEIEEEDGERSQAQKP----LRGKKILVADDSMMLRRVAEINLRHLGATV 1025
S G Q +E E A +P L G +ILV DD+ R + + L++
Sbjct: 481 STPGQGTKFQINLELEKSALEHAHQPNITDLAGIRILVVDDNQTNREILRLQLQNWKIQA 540
Query: 1026 EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQ 1085
+ + AL + N PY +++D MP M+G + +KI + N+
Sbjct: 541 VCTHSADHALFAMTKACNINE--------PYHLVILDMHMPKMDGLQLAKKIHADPTLNK 592
Query: 1086 VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
I ++ T H + A AG+ ++ KP+ + L++ I
Sbjct: 593 TRIMMLTSTHHDVTQLAKDN--AGILRYVNKPVRQKELIDII 632
>gi|386057570|ref|YP_005974092.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
M18]
gi|347303876|gb|AEO73990.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
M18]
Length = 918
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|424942841|ref|ZP_18358604.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
NCMG1179]
gi|346059287|dbj|GAA19170.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
NCMG1179]
Length = 918
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|443476597|ref|ZP_21066495.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena
biceps PCC 7429]
gi|443018426|gb|ELS32677.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena
biceps PCC 7429]
Length = 793
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 146/293 (49%), Gaps = 14/293 (4%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K +A Q AE + +KS N SH++R L I G+ +L E + + +L+ +
Sbjct: 349 KLRQAKQIAEEANQSKSKFLTNMSHELRTPLNAIIGISQLLQDEVEISPQHKADLQIIYN 408
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD--P 472
LL L+ ILD SK+EAGKM++ ++ + EL+++V + F A K +E++ D P
Sbjct: 409 SGYHLLALIEDILDISKIEAGKMEIQPMNYKLLELIQEVSESFQFSANNKNIELICDFAP 468
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+ V D +LKQIL NLL NAVKFT +G ++ R + + +L+ S
Sbjct: 469 DLPQI-----VHTDIKRLKQILFNLLGNAVKFTDKGKVTFRVSRIRDRELTINTLADSH- 522
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
F+ I NK A N + FEV DTG G+ EK +F + Q
Sbjct: 523 -FMAPIMAPTNANKLACSANSMSNDMSKAMEIAYLLFEVLDTGLGMDAEKLDKIFLPFEQ 581
Query: 593 VKEGE---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
+ E + GTGLGL I Q + R++GG+I + K G+CF ++ + + E
Sbjct: 582 LGENKLKSQGTGLGLAISQKIARMLGGEITV--KSQIGLGSCFNLHLSIEVVE 632
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 14/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KIL+A+D+++ + VA LG TV+ NG + ++RS Y+ +
Sbjct: 673 KILIAEDNLVNQMVAVRLFERLGYTVDIANNGLEVIAMMRSQ-------------TYNVV 719
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD +MP M+G E T KI E+ N IIA+TA+ + ++ + AGMD +L KP+
Sbjct: 720 FMDIQMPEMDGLETTAKILEDWNLNS-RPRIIAMTANAMSGDREECLAAGMDDYLSKPIQ 778
Query: 1120 RDHLMEAIK 1128
+ L+ A+K
Sbjct: 779 IEQLLAALK 787
>gi|421152710|ref|ZP_15612287.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
14886]
gi|404524906|gb|EKA35200.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
14886]
Length = 918
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|20279446|gb|AAM18726.1|AC092548_4 putative histidine kinase [Oryza sativa Japonica Group]
Length = 925
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 172/327 (52%), Gaps = 35/327 (10%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
++I V +++ ++ ++ + + +E + ++ ++ +AE + KS A SH
Sbjct: 288 IMISSAVAIIVLLVGYIIYATLNSLEEAEDNYTTMRDLKG--RAEAADVAKSQFLATVSH 345
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND----LLGLLNSILDTSKVEAG 435
+IR + G+ G++++ +EL+T R V A + L+ L+N +LD +K+E+G
Sbjct: 346 EIRTPMNGVLGMLQMLM-----DTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESG 400
Query: 436 KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILS 495
K++L FDV ++L++VV LF + KG+E+ + SD + GD + +QI++
Sbjct: 401 KIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVP---DVLIGDPWRFRQIIT 457
Query: 496 NLLSNAVKFTSEGHISVRACV-----KKPSAIGNPS------LSSSRHGF-LQSISCLFY 543
NL+ N++KFT +GHI +R + +K A+ + S ++S++ ++S L
Sbjct: 458 NLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEV 517
Query: 544 KNKKARGDLEAVNAAQRDENAME---FTFEVDDTGKGIPKEKRKTVFENYVQ----VKEG 596
N R LE+ + +A++ V+DTG GI K+ + +F ++Q
Sbjct: 518 ANN--RKTLESFRMFKDSSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRT 575
Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDK 623
GGTG+GL I + LV LMGG+I V K
Sbjct: 576 YGGTGIGLSITKRLVELMGGEIGFVSK 602
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + R VA L+ GA V ++G+ A+ L PH
Sbjct: 792 LTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAIS----------RLQPPH--K 839
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR 1083
+D MD +MP M+G+EATR +R E +
Sbjct: 840 FDACFMDVQMPEMDGFEATRLVRSVESK 867
>gi|421496499|ref|ZP_15943727.1| Tmao reductase sytem sensor tor [Aeromonas media WS]
gi|407184487|gb|EKE58316.1| Tmao reductase sytem sensor tor [Aeromonas media WS]
Length = 915
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 146/291 (50%), Gaps = 56/291 (19%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQMN 413
KQ +A +AE+ + KS+ A SH+IR + GI G L +E SE + L +
Sbjct: 409 KQRQARAEAEQANRAKSVFLATMSHEIRTPMNGILG--GLTLLEDTSLSETQQRYLAAIE 466
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-- 471
LL +LN ILD SK+EAG ++ E F + +L++++ LF P A +GV +VL+
Sbjct: 467 HSGESLLEILNDILDYSKIEAGHVEARREPFPLHQLVDELSALFRPKAEARGVALVLEYA 526
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVK-KPSAIGNPSLSSS 530
P+ V V+GD KL+Q+L+NLL NAVKFT+ G I C++ P G P
Sbjct: 527 PALPPV-----VEGDLGKLRQVLANLLGNAVKFTARGRI----CLEVSPLPCGGPC---- 573
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+ C+ F V DTG GIP+ +++ VFE +
Sbjct: 574 ------AEPCIL--------------------------FVVSDTGPGIPEHEQEAVFEAF 601
Query: 591 VQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
Q K +GGTGLGL I + LV MGGD+ + + GE G F F++ L
Sbjct: 602 RQRKRDMGHQGGTGLGLAISRKLVAAMGGDLRLA-SQPGE-GCRFSFSLPL 650
Score = 45.4 bits (106), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 22/134 (16%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
++IL+ +D+ + R VA L LG V E+G +AL V P++
Sbjct: 670 REILLVEDNEINRLVAHGMLTRLGHRVTLAEDGRSALARVTE-------------RPFEL 716
Query: 1059 ILMDCEMPIMNGYEATRKIREE-----EKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
L+D +P M+G +RE+ E+ ++ +P IA++A + E+ +EAG
Sbjct: 717 ALLDINLPDMDGM----TLREDLAAISEEVHERPLPAIAISAQMYPEDIRLCLEAGFADF 772
Query: 1114 LGKPLNRDHLMEAI 1127
+GKP+ L AI
Sbjct: 773 VGKPVRLAALASAI 786
>gi|344341266|ref|ZP_08772187.1| response regulator receiver modulated diguanylate cyclase
[Thiocapsa marina 5811]
gi|343798846|gb|EGV16799.1| response regulator receiver modulated diguanylate cyclase
[Thiocapsa marina 5811]
Length = 1225
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 133/270 (49%), Gaps = 57/270 (21%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEA--GPGSELETNLRQMNV 414
++A Q+AER KS AN SH+IR L + G+ +L E+ P +L LR++N
Sbjct: 276 LQAKQKAERLERTKSAFLANMSHEIRTPLNAVLGVAQLLGYESLTDPQHDL---LRRINE 332
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
LL ++N ILD SK+EAG++ + + FD+ LL + L HP+A +KG+++ +
Sbjct: 333 AGASLLRVVNDILDLSKIEAGQLAIEQHPFDLSTLLSKIDGLHHPIARQKGIDLCI---- 388
Query: 475 GSVLKF--SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
VL + GD ++++QILSNL+ NA+KFT +G +S+ +H
Sbjct: 389 -QVLPALEDTLIGDALRIEQILSNLVGNAIKFTEQGSVSILV----------------QH 431
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
G D++ + FE+ DTG GI E +F + Q
Sbjct: 432 G-------------------------PDDDDRVRLRFEIRDTGIGIAPEALAGLFTPFTQ 466
Query: 593 VKEG----EGGTGLGLGIVQSLVRLMGGDI 618
G GGTGLGL I + LV LMGG I
Sbjct: 467 ADTGITRRFGGTGLGLAISKLLVDLMGGTI 496
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 978 KQTEIEEEDGERSQAQKP-LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ 1036
++TE+ D Q Q P L G+ LV DDS M R + E LR GA ++G A+
Sbjct: 520 ERTELRAADAS-DQPQMPRLSGRHYLVVDDSAMNRLLIERMLRIEGARTTLLDDGGQAIA 578
Query: 1037 LVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAH 1096
+ G D D ILMD +MP+M+G ATR IR + + +P+IA+TA
Sbjct: 579 WLEDGSGD-----------IDAILMDVQMPVMDGLTATRLIRGDLHLHD--LPVIAVTAG 625
Query: 1097 ISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ EE AG++ L KP++ + L +
Sbjct: 626 VMAEEQAAARAAGVNEVLPKPIDLEQLTRCL 656
>gi|416865626|ref|ZP_11915770.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
138244]
gi|334834369|gb|EGM13338.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
138244]
gi|453047509|gb|EME95223.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PA21_ST175]
Length = 918
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGHERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|253702042|ref|YP_003023231.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
gi|251776892|gb|ACT19473.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
Length = 718
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 147/303 (48%), Gaps = 53/303 (17%)
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
EM + + EA +AE + KS+ AN SH+IR + G+ GL +L P E+
Sbjct: 192 EMKVAQRTTELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLAKLLM--ETPLDEV 249
Query: 406 ETN-LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK 464
+ + ++ CA +LL ++N ILD SKVEAG + L FD+ L+ + F +K
Sbjct: 250 QQGYMESLSDCAENLLTIINEILDVSKVEAGMITLEAVVFDLRRFLDRSLQPFVLRGQKK 309
Query: 465 GVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN 524
GV V L+ G + GD V+L+Q+L+NLL NA+KFT +G I++ A
Sbjct: 310 GVRVHLEADSGLP---ELMVGDPVRLRQVLANLLGNALKFTQQGSITLTA---------- 356
Query: 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRK 584
+L+ S EN + F V DTG GI E +
Sbjct: 357 -ALTGS------------------------------GENRVALKFSVADTGIGIAAEAME 385
Query: 585 TVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
+FE + Q GGTGLGL I +SLV LMGG++ V GE G+ F F++ +++
Sbjct: 386 VIFEKFSQADSSTTRLYGGTGLGLSISKSLVELMGGELS-VQSTLGE-GSVFSFSIEMSL 443
Query: 641 REA 643
+A
Sbjct: 444 PKA 446
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D I MD +MP+M+G EATR IR E+ + I A+TA+ E+ AGMD +L
Sbjct: 511 FDLIFMDVQMPVMDGLEATRIIRSREEGTGWRVHICAMTANAMKEDVTICTGAGMDSYLS 570
Query: 1116 KPLNRDHLMEAIK 1128
KP+ + I+
Sbjct: 571 KPVREREIASMIR 583
>gi|451988206|ref|ZP_21936344.1| COG0642: Signal transduction histidine kinase [Pseudomonas
aeruginosa 18A]
gi|451754113|emb|CCQ88867.1| COG0642: Signal transduction histidine kinase [Pseudomonas
aeruginosa 18A]
Length = 918
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGHERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|427725002|ref|YP_007072279.1| integral membrane sensor hybrid histidine kinase [Leptolyngbya sp.
PCC 7376]
gi|427356722|gb|AFY39445.1| integral membrane sensor hybrid histidine kinase [Leptolyngbya sp.
PCC 7376]
Length = 905
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 153/285 (53%), Gaps = 36/285 (12%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A ++AE + KS AN SH++R L I G ++ +E +L +N
Sbjct: 363 KAQEKAEIANQAKSSFLANMSHELRTPLNAILGFTQVMQHHDSLTTEQNNHLNIINQSGE 422
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +LD SK+EAGK L ++ F++ +LLE + + A KG+++V+D + V
Sbjct: 423 HLLALINDVLDMSKIEAGKSTLNKDSFNLPKLLETLEAMLKFKAESKGLDLVIDCA-PDV 481
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ ++ D+ KL+Q+L NLL NA+KFT +G + ++ S
Sbjct: 482 PRW--IRTDQQKLRQVLINLLGNALKFTQDGQVQLQVTQTNASE---------------- 523
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG- 596
+N ++R LEA +A + TFEV D+G GI E+ + +F+++ Q + G
Sbjct: 524 ------ENPESR--LEATSAL-----SQVLTFEVIDSGPGITPEELQHLFDSFSQGEHGK 570
Query: 597 -EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
+GGTGLG+ I QS V+LMGG I V+ + G+ GT F F + + I
Sbjct: 571 QQGGTGLGMAISQSFVQLMGGKIR-VESQLGQ-GTRFSFELPVEI 613
>gi|333998429|ref|YP_004531041.1| sensory box sensor histidine kinase/response regulator [Treponema
primitia ZAS-2]
gi|333739984|gb|AEF85474.1| sensory box sensor histidine kinase/response regulator [Treponema
primitia ZAS-2]
Length = 1198
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 144/295 (48%), Gaps = 52/295 (17%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
+L KQ++A +AER + KS+ AN SH+IR + I G+ EL + P E R
Sbjct: 459 TLEKQIKALTEAERATQAKSVFLANTSHEIRTPMNAILGMAELILRKDIPQDVYE-EARS 517
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
+ ++LL ++N ILD SK+E+GK+ ++E D+ +G ++ D + + + +R + +L
Sbjct: 518 IKQAGSNLLSIINDILDFSKIESGKLDIVEVDYQLGSVINDAISI---IRIRLSEKPILF 574
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
D ++ GD V+++Q+L NLLSN+VK+T GHI +
Sbjct: 575 TVDIDSRLPDRLAGDEVRVRQVLMNLLSNSVKYTQAGHIILAVT---------------- 618
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
G+L E+ + V DTG GI +E +F +
Sbjct: 619 ------------------GELW--------EDQIILAISVTDTGIGIKQEDMGKLFGEFQ 652
Query: 592 QV----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
Q +G GTGLGL I ++L RLMGGDI +VD G +G+ F + +RE
Sbjct: 653 QFDTHRNQGIEGTGLGLAISRNLCRLMGGDI-VVDSVYG-KGSVFTATIPQKVRE 705
Score = 43.5 bits (101), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 29/135 (21%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ DD + VA+ L + +G A+ L++ N++ YD I
Sbjct: 847 RLLIVDDIVTNLNVAKGLLSVYQIDITTVTSGREAVDLIK---NNR----------YDMI 893
Query: 1060 LMDCEMPIMNGYEATRKIR--EEEKRNQVH--------------IPIIALTAHISGEEAD 1103
LMD MP M+G EAT IR E E++ V +PII LTA+ +
Sbjct: 894 LMDHMMPEMDGIEATAAIRAWEAEQKESVEFDPQDQTPKEQAKPVPIIVLTANAVTGMRE 953
Query: 1104 KTIEAGMDVHLGKPL 1118
+ G + +L KP+
Sbjct: 954 MFLSKGFNDYLSKPI 968
>gi|417781088|ref|ZP_12428843.1| 7TM diverse intracellular signaling [Leptospira weilii str.
2006001853]
gi|410778729|gb|EKR63352.1| 7TM diverse intracellular signaling [Leptospira weilii str.
2006001853]
Length = 821
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 157/334 (47%), Gaps = 63/334 (18%)
Query: 337 FKSARAARKEMHLCASLIKQ------------MEATQQAERKSMNKSLAFANASHDIRAA 384
FK + E+H L+K+ ++A + AE+ S KS AN SH+IR
Sbjct: 392 FKLKEGLQSEIHKNIILLKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIRTP 451
Query: 385 LAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDF 444
+ G+ G+++L E + ++ ++V A LL ++N ILD SK+EAGK+ L +E F
Sbjct: 452 MNGVLGMVQLLGT-TKLNDEQKEYIQILSVSAKSLLQIINDILDFSKIEAGKISLDKEVF 510
Query: 445 DVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKF 504
+ +L+++ DL +P+A +K + + L +G V GD+++L+QIL NL N +KF
Sbjct: 511 SIRSVLDEIHDLLYPLAKQKRIGLRL---EGKFEIQEYVYGDQLRLRQILWNLTGNGIKF 567
Query: 505 TSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENA 564
T+ G + + K S +D+ +
Sbjct: 568 TNRGEVVLSVSQKNIS---------------------------------------KDKIS 588
Query: 565 MEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
+E F V D+G GIP EK+K VF+ + Q GG GLGL I + LV L GG + +
Sbjct: 589 IE--FRVSDSGIGIPLEKQKQVFDAFSQSDTSTARKFGGFGLGLSITKQLVELQGGTLNL 646
Query: 621 VDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
KE G+ F F + I S + + EK
Sbjct: 647 ESKEG--YGSKFTFAITYGIPSESEIEKIFEAEK 678
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + + +ILVA+D+ + E L+ LG NG ++ ++ +
Sbjct: 680 KDLESAYSNATSKSMRILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIEKMQLNI-- 737
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 738 -----------FDMILMDIHMPEVDGMEATKWIRSQKQNAEFPI-IIALTADVIESNKEM 785
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ +L KPL+ L + + +
Sbjct: 786 YISKGMNDYLAKPLDLPLLKKTLDF 810
>gi|374300938|ref|YP_005052577.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
gi|332553874|gb|EGJ50918.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
Length = 946
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 139/287 (48%), Gaps = 49/287 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A Q+AER + KS A+ SH+IR + GI GL EL ++ P +++ L + A+
Sbjct: 558 QAKQEAERANRAKSEFLASMSHEIRTPMNGIIGLTELALMQR-PKAKVRDYLGMVKQSAD 616
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV--EVVLDPSDG 475
LLG++N ILD SK+EAG+++L + F E+LE + + A RKG+ +DP
Sbjct: 617 SLLGIINDILDLSKIEAGRIELEKSFFSPREMLEGLFETMRIEAERKGITFSTKIDPRVP 676
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ L GD +L+QI NL+SNA+KFT G +SV+ + + P
Sbjct: 677 ASL-----FGDEGRLRQIFVNLISNALKFTEAGSVSVQVTAEDHMDLAKP---------- 721
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+E + DTG GIP + +++FE +
Sbjct: 722 ---------------------------GPVEIIASIRDTGIGIPANRLESIFEPFDTGTR 754
Query: 596 G--EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I + L+ LMGG I + K +G+ F F+V L +
Sbjct: 755 STRHGGTGLGLTITKGLIDLMGGRITV--KSRPGKGSTFSFSVMLEL 799
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 14/133 (10%)
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
A+ LR KIL+A+D+ + R +A L+ G V A ENG AL + L +R
Sbjct: 814 AEPELRPLKILLAEDNEINRFLALELLKERGHVVTAVENGRDALNM----LAKER----- 864
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGM 1110
+D +LMD +MP +NG EATR+IR + IPI+ALTA+ + +K + AGM
Sbjct: 865 ----FDLVLMDVQMPEVNGVEATRRIRAGKVPGTDPRIPIVALTAYALKGDREKFMSAGM 920
Query: 1111 DVHLGKPLNRDHL 1123
D +L KP++ + L
Sbjct: 921 DDYLSKPIDMEEL 933
>gi|421166368|ref|ZP_15624628.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
700888]
gi|404538566|gb|EKA48095.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
700888]
Length = 918
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKDTRFSVDLPLSPA 636
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|355640249|ref|ZP_09051668.1| hypothetical protein HMPREF1030_00754 [Pseudomonas sp. 2_1_26]
gi|354831461|gb|EHF15476.1| hypothetical protein HMPREF1030_00754 [Pseudomonas sp. 2_1_26]
Length = 786
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 147/300 (49%), Gaps = 65/300 (21%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 260 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 316
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 317 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 375
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR
Sbjct: 376 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR----------------- 415
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQR--DENAME-FTFEVDDTGKGIPKEKRKTVF 587
QR DE E + + D+G GI + +KT+F
Sbjct: 416 ---------------------------VQRRFDEGGRERLLYSISDSGIGISAQAQKTLF 448
Query: 588 ENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
E++ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 449 ESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 504
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 659 ILVAEDNPVNQLVVRGFLAKRGYAVRLTGNGRLALD---EYLRDPNGI--------QLIL 707
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 708 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 767
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 768 RAELYATLERL 778
>gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 693
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 135/289 (46%), Gaps = 50/289 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +AE ++ KS A SH++R L GI G+ +L ++ E T +
Sbjct: 159 EAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLL-LDTRLDPEQRTYVEAFRTSGK 217
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLGL++ ILD S++EAG++ L E FDV L+E VV+L P A KG+E+ LD +D
Sbjct: 218 ALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADD-- 275
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L +V GD +++QIL NL NA+KFT G + V SL+ S G
Sbjct: 276 LAALRV-GDADRVRQILVNLAGNAIKFTQAGGVGV-------------SLARSGEG---- 317
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
V+DTG GIP+E+ +FE + Q +
Sbjct: 318 -------------------------QGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSA 352
Query: 598 G--GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GTGLGL I + LV M G IE + RG+ FR + L E +
Sbjct: 353 SHEGTGLGLAITRRLVERMNGTIEA--RSTVGRGSTFRVVLPLPAAEGA 399
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 965 KTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGAT 1024
KTG S + ++ G+ Q RG+++L+A+D+ + +A L LGA
Sbjct: 537 KTGTSQ---PGPRQPAPVKTTPGKTGSIQTAARGRRVLLAEDNPINALLATKALERLGAQ 593
Query: 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN 1084
V +G AL A P+D L+D MP ++G E R+IR E
Sbjct: 594 VIHARDGLEALA------------AAEGQGPFDLALIDIRMPGLDGLETARRIRAREAET 641
Query: 1085 QVH-IPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+ ++ALTA+ E+ D AG D L KPLN
Sbjct: 642 GASPLHLVALTANTGREDVDAASAAGFDGFLPKPLN 677
>gi|114570615|ref|YP_757295.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
gi|114341077|gb|ABI66357.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
Length = 572
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 178/388 (45%), Gaps = 61/388 (15%)
Query: 288 FEVAGVKSVYALAMPR-----KGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARA 342
++ G +S+YA A+P G+++L A L+ +V ++++ + + +A
Sbjct: 88 YQFWGPRSLYA-ALPVVGAAFAGVIALADIADTPAAYPLVTHSVALMLACIWLISLAAVF 146
Query: 343 ARKEMHLCASLIKQMEATQQAERKSMN-----KSLAFANASHDIRAALAGITGLIELCYV 397
+ L S ++Q A Q A S KS AN H++R L G+ G+ ++ +
Sbjct: 147 GSVQ-KLAESQLRQANADQAAALSSSRAAQRAKSEFLANVGHEVRTPLNGMLGMADVMHQ 205
Query: 398 EAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLF 457
G + + L+ + LL LLN ILD SK+E G++ DFD+G+L+E +
Sbjct: 206 VGGLSPDQDERLQLIRDSGATLLELLNEILDQSKIETGQVMAERIDFDLGKLVEKAASSW 265
Query: 458 HPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVK 517
P A +G+++ D + L ++GD ++++QIL+NL+SNA+KFT GH++++ +
Sbjct: 266 RPEAESRGLDLH---LDLAALHHPVLQGDPLRIRQILNNLVSNALKFTKTGHVALK-VEQ 321
Query: 518 KPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKG 577
P A N + EV DTG G
Sbjct: 322 SPGATAT------------------TWNTR---------------------IEVTDTGSG 342
Query: 578 IPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFR 633
IP EK + +FE + Q + GGTGLGL I + L LM G +++ RG+CF
Sbjct: 343 IPSEKLEAIFEAFHQADASITRRYGGTGLGLSISRQLAHLMDGTLDVTSTPG--RGSCFA 400
Query: 634 FNVFLAIREASANDNNTQGEKELAGGDS 661
N+ LA E + D + + G S
Sbjct: 401 LNLPLAAGELAPADTAERAGTNMPGALS 428
>gi|163858792|ref|YP_001633090.1| virulence sensor protein [Bordetella petrii DSM 12804]
gi|163262520|emb|CAP44823.1| virulence sensor protein [Bordetella petrii]
Length = 684
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 145/303 (47%), Gaps = 28/303 (9%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A AE + K+ A SH+IR LA I G ++L E G L+T RQ A+
Sbjct: 236 QAKHDAEASAEAKARFLAAMSHEIRTPLATIIGALDLMR-ETG----LQTGQRQHYQLAD 290
Query: 418 D----LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
D L+ ++ ILD S++E+G + FD+ ++L V+ +F +A RKG+ + LD +
Sbjct: 291 DAARLLMEIIGDILDFSRLESGYAEAEAVPFDLRDVLGQVLRVFELLARRKGIALTLDVA 350
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
G + GD +++QI+ NL+ NAVKFT +G I V AC++ P + G
Sbjct: 351 PGVA---HTLMGDPTRIQQIVLNLVGNAVKFTEQGGIHVSACLE-----AAPRTGAQDDG 402
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+ C +A A+ Q V DTG GIP+ +F+ + Q
Sbjct: 403 QHEGQDCALDMTARADARASALPEVQ------HIALTVADTGVGIPESVHSQLFQAFTQA 456
Query: 594 K----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNN 649
GG+GLGL I L L+GG I ++ G+ G+ F+ ++ L + ASA N
Sbjct: 457 DISTARRYGGSGLGLAICHRLAGLLGGSIRLLHSAPGQ-GSAFQVSLPLPVAHASATVNA 515
Query: 650 TQG 652
G
Sbjct: 516 ITG 518
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 992 AQKPLRGK---KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
A +P G ++L DD R + + G + + E AL+ +R Q D
Sbjct: 553 AARPASGAQTARVLAVDDHEPYRIILRQLMLRAGLNCDTVADAEQALEALR-----QHD- 606
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQ-VHIPIIALTAHISGEEADKTIE 1107
Y + DC+MP ++G E R++R++E + Q +PI+ +TA S ++ +
Sbjct: 607 -------YAMLFTDCQMPGIDGCELARRVRQQEAQAQRPRLPIVGVTADCSTQQMQRCRA 659
Query: 1108 AGMDVHLGKPL 1118
+GMD +L KP+
Sbjct: 660 SGMDDYLAKPV 670
>gi|359727069|ref|ZP_09265765.1| histidine kinase response regulator hybrid protein [Leptospira
weilii str. 2006001855]
Length = 821
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 157/334 (47%), Gaps = 63/334 (18%)
Query: 337 FKSARAARKEMHLCASLIKQ------------MEATQQAERKSMNKSLAFANASHDIRAA 384
FK + E+H L+K+ ++A + AE+ S KS AN SH+IR
Sbjct: 392 FKLKEGLQSEIHKNIILLKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIRTP 451
Query: 385 LAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDF 444
+ G+ G+++L E + ++ ++V A LL ++N ILD SK+EAGK+ L +E F
Sbjct: 452 MNGVLGMVQLLGT-TKLNDEQKEYIQILSVSAKSLLQIINDILDFSKIEAGKISLDKEVF 510
Query: 445 DVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKF 504
+ +L+++ DL +P+A +K + + L +G V GD+++L+QIL NL N +KF
Sbjct: 511 SIRSVLDEIHDLLYPLAKQKRIGLRL---EGKFEIQEYVYGDQLRLRQILWNLTGNGIKF 567
Query: 505 TSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENA 564
T+ G + + K S D+ +
Sbjct: 568 TNRGEVVLSVSQKNISI---------------------------------------DKIS 588
Query: 565 MEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEI 620
+E F V D+G GIP EK+K VF+ + Q GG+GLGL I + LV L GG + +
Sbjct: 589 IE--FRVSDSGIGIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQLVELQGGTLNL 646
Query: 621 VDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
KE G+ F F + I S + + EK
Sbjct: 647 ESKEG--YGSKFTFAITYGIPSESEIEKIFEAEK 678
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + + +ILVA+D+ + E L+ LG NG ++ + LN
Sbjct: 680 KDLESAYSNATSKSMRILVAEDNETNCLLIERALKKLGYDPVVVHNGREVIE--KMQLN- 736
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 737 ----------VFDMILMDIHMPEVDGMEATKWIRSQKQNAEFPI-IIALTADVIESNKEM 785
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ +L KPL+ L + + +
Sbjct: 786 YISKGMNDYLAKPLDLPLLKKTLDF 810
>gi|226289102|gb|EEH44614.1| histidine kinase D5 [Paracoccidioides brasiliensis Pb18]
Length = 1940
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 163/339 (48%), Gaps = 63/339 (18%)
Query: 350 CASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
C + Q ++ ++ +++ F+N SH+IR L GI G I ++L+++
Sbjct: 1242 CTDINDQKLLERKLNKEMESRTNFFSNMSHEIRTPLNGILGAIPHIL-----DTQLDSDQ 1296
Query: 410 RQM----NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
R+M + +N+L L+++ILD S+VEAGKM ++ + F+V +LE+V+D AM KG
Sbjct: 1297 RRMLDIIHNSSNNLSELVDNILDVSRVEAGKMNIVRQVFNVRSVLEEVIDTIGSRAMDKG 1356
Query: 466 VEV-VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN 524
+E+ L S+ + F GDR +++QIL NL+ N+VKFTS G I R + S N
Sbjct: 1357 LELNYLVESNVPKMVF----GDRFRIRQILLNLMGNSVKFTSHGEILTRCSIHHDS---N 1409
Query: 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRK 584
SL+ S + FEV DTG+G K K
Sbjct: 1410 ASLNGSE---------------------------------ILLNFEVVDTGRGFSKADAK 1436
Query: 585 TVFENYVQVKEGEG-----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
+ + + Q+ EG G G+GLGL + + LV + GG + KE G +F+ F+
Sbjct: 1437 RLMQRFSQI-EGNGSQQHTGSGLGLFLSRQLVEMHGGQLTPTSKE----GQGSKFSFFVK 1491
Query: 640 IREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAP 678
+ E S+ Q EL G +AA Q+ K+P
Sbjct: 1492 VDEVSSRPPTPQ---ELFKGSNAALCMQVTEERSAPKSP 1527
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G ++L+ +D R V L + E NG+ + +V S ++ G Y
Sbjct: 1785 KGYRVLLVEDDETNRTVMLKYLEKVKLVSETASNGQECVDMVFS-----KEPGY-----Y 1834
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLG 1115
I+ D +MPI NGYE ++IR E+RN IPI+AL+A+ ++ D AG + ++
Sbjct: 1835 SLIICDIQMPIKNGYETCQEIRSWEQRNHFPQIPIMALSANAMTDQIDSASRAGFNDYVT 1894
Query: 1116 KPLNRDHL 1123
KP+ + L
Sbjct: 1895 KPIKHNEL 1902
>gi|430761683|ref|YP_007217540.1| PAS protein [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011307|gb|AGA34059.1| PAS protein [Thioalkalivibrio nitratireducens DSM 14787]
Length = 1324
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 137/286 (47%), Gaps = 53/286 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A +QAE + KS AN SH+IR L I GL L + G E L +++
Sbjct: 708 DAREQAEAANRAKSAFLANMSHEIRTPLNAIVGLTHLLRRD-GVRPEQVARLDRIDNAGR 766
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK+EAG+++L DF + +L++V + A KG+ + +DP V
Sbjct: 767 HLLSIINDILDLSKIEAGRLELETTDFHLSAILDNVASIIGDPAREKGLAIEIDPDAVPV 826
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++GD +L+Q L N NAVKFT G I++RA +
Sbjct: 827 W----LRGDPTRLRQALLNYAGNAVKFTDAGSITLRAEL--------------------- 861
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF-ENYVQV--- 593
+ +E ++ FEV DTG G+P+ + + +F E++ QV
Sbjct: 862 --------------------LEENEQGLQVRFEVVDTGIGVPEGELQRLFHEDFAQVANA 901
Query: 594 -KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL IV+ L +MGG++ D E G G+ F F V L
Sbjct: 902 GDRARGGTGLGLSIVRRLAEMMGGEVG-ADSEPGT-GSRFWFTVRL 945
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 19/139 (13%)
Query: 989 RSQAQKPLR----GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
R+ A LR G ++L+A+D+ + R VA L +G V+ ++G A+ + +
Sbjct: 960 RADADADLRARYAGARVLLAEDNPINREVALELLHAVGFAVDTADDGREAVHKAQEQV-- 1017
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
YD +LMD +MP M+G EA R IR + PI+A+TA+ E+
Sbjct: 1018 -----------YDLVLMDLQMPQMDGLEAARLIRALPGWERQ--PILAMTANAFEEDRKA 1064
Query: 1105 TIEAGMDVHLGKPLNRDHL 1123
+AGMD L KP++ + L
Sbjct: 1065 CEQAGMDGFLPKPVDPEDL 1083
>gi|319787299|ref|YP_004146774.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
11-1]
gi|317465811|gb|ADV27543.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
11-1]
Length = 736
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 155/339 (45%), Gaps = 64/339 (18%)
Query: 347 MHLCASLIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP-GSE 404
M+L +SL++Q+ AT++A+R S KS AN SH+ R L G+ G+ EL + P SE
Sbjct: 168 MYL-SSLLRQLTRATEEAQRASEAKSRFLANMSHEFRTPLNGLAGMTEL--LSTTPLDSE 224
Query: 405 LETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK 464
LR + L+GL+ +LD S +EAGK++L E+F E ++ + + P A +K
Sbjct: 225 QRECLRTIQASTRSLMGLVEDVLDISAIEAGKVKLSPENFSPREAVDSIGLILQPQARQK 284
Query: 465 GVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN 524
+E ++ D S V GD V L+Q+L NL+ NAVKFT G + V + S
Sbjct: 285 QLEYLVVVEDAVP---SLVHGDAVHLRQVLLNLVGNAVKFTDAGRVRVDVSLAGAS---- 337
Query: 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRK 584
D + F V DTG GIP+ R+
Sbjct: 338 ------------------------------------DGQVVRLRFAVSDTGIGIPESMRE 361
Query: 585 TVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGE-RGTCFRFNV-FL 638
+FE + Q G GGTGLG I + LV MGG I EN E RG+ F F + F
Sbjct: 362 RLFEAFEQADAGLARRYGGTGLGTTIARGLVEAMGGRI---GYENLEPRGSRFWFEIPFQ 418
Query: 639 AI---REASANDNNTQGEKELAGGDS----AAGDTQLQH 670
A R + + + E E A D A D L+H
Sbjct: 419 AAAEPRRVAVLEPGQEAEVEAAPSDDGKVIAFADPFLRH 457
Score = 46.6 bits (109), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+R ++LVADD R V + L+ G V GE L A +
Sbjct: 461 VRSMQVLVADDYEANRMVLQRLLQKAGHKVTCVAGGEEVLD-------------AMAVRD 507
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD ++D MP ++G + R++R + P++ L+A ++ E + +AG L
Sbjct: 508 YDVAVVDLHMPGISGLDLLRQLRVIQAGGGPQTPVVILSADVTPESIQRCEKAGAYAFLA 567
Query: 1116 KPLNRDHLMEAI 1127
KP+ L++ +
Sbjct: 568 KPVAASRLLDVL 579
>gi|443477298|ref|ZP_21067155.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
gi|443017594|gb|ELS32000.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
Length = 834
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 147/295 (49%), Gaps = 46/295 (15%)
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS 403
RKE L A A Q AE+ + KS+ AN SH+IR + G+ G+ +L +
Sbjct: 275 RKEQELLA-------ARQFAEQSNRAKSIFLANMSHEIRTPMNGVLGMTDLL-LSTTLDD 326
Query: 404 ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
+ + + + N LL L+N ILD SK+E G++QL F++ + +E++++LF A
Sbjct: 327 RQQDFVENIRLSGNLLLSLINRILDLSKLEEGELQLESLPFNLEQCIEEILELFGLQAHN 386
Query: 464 KGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG 523
+ +E+ + S L + D V+ +QI+ NL+ NA+KFTSEG I VR
Sbjct: 387 QSLEI--NASFEEDLP-RLLMADTVRFRQIMMNLIGNAIKFTSEGEIVVR---------- 433
Query: 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKR 583
+ R ++NKK+ LE + +Q + F V DTG GI +
Sbjct: 434 ---IERDRD----------FENKKS---LEQASPSQ-----IYLRFSVIDTGIGIHPSNQ 472
Query: 584 KTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
+F+ + QV GGTGLGL I + LV LM G+I I + +RGTCF F
Sbjct: 473 DKLFKPFSQVDTSTNRRFGGTGLGLAISRQLVELMQGEIGISSPVDNDRGTCFWF 527
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 15/147 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
E+ E + + LR +IL+A+D++ ++V L LG + ENGE LQL+++
Sbjct: 698 ENQEEAILMEKLRSLRILLAEDNITNQKVTLAYLSQLGIQSDLAENGEQVLQLIQTK--- 754
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP--IIALTAHISGEEA 1102
YD ILMDC+MP+++GY+ T IR E NQ P IIA+TA+ E+
Sbjct: 755 ----------SYDIILMDCQMPVLDGYDTTEAIRRLEAINQTPKPILIIAMTANAFTEDR 804
Query: 1103 DKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
D+ + GMD +L KP+ + L EA+ Y
Sbjct: 805 DRCLAIGMDDYLSKPIRKQQLKEALAY 831
Score = 43.5 bits (101), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
++ L + ILV D + R+ L GA + + A+ + G N +
Sbjct: 546 RQSLSDRHILVVDANQYARKTIRYYLTKFGANIHEASSLPEAIAYLDHGQNQNHNNNHN- 604
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIA-LTAHISGEEADKTIEAGMD 1111
D +L+D + NG EA R+I +EK +++PIIA LTA+ G E ++ G
Sbjct: 605 ---IDAVLIDWRLTNFNGTEAIRQIHSKEKF--INLPIIALLTANRQG-ETQTALDQGFC 658
Query: 1112 VHLGKPLNRDHLMEAI 1127
++ KP + L++A+
Sbjct: 659 GYVTKPFKKQRLLKAL 674
>gi|334136312|ref|ZP_08509781.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
gi|333606163|gb|EGL17508.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
Length = 912
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 139/283 (49%), Gaps = 51/283 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+ A + AE+ KS A SH+IR + GI G+ +L E E ++ + +
Sbjct: 502 IRAKESAEKADQAKSEFLAIMSHEIRTPMNGIIGMADLL-AETELSEEQQSYADIILQSS 560
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL +LN ILD SK+EAGKM + E FDV +L+ VV+LFHP A +G+ + + DG
Sbjct: 561 YALLRILNEILDFSKIEAGKMVVNHEPFDVRSVLDHVVELFHPKAAERGIRLTYE-LDGG 619
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTS-EGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ S + GD L+QI+ NL+ NA+KFT +GH+S+ A
Sbjct: 620 IP--STLIGDEGILRQIIVNLVGNAIKFTEKDGHVSLSA--------------------- 656
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
K K G +AV F V DTG GIP +K+ +F+++ Q
Sbjct: 657 --------KLDKMPGRSDAV-----------LQFSVRDTGIGIPADKQSQLFQSFSQLHP 697
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
+ GGTGLGL I + LV L+GG I + + N G+ F F
Sbjct: 698 TINRKYGGTGLGLAICKKLVELLGGAIGVDSQVN--VGSTFHF 738
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+LVADD+ + R + L+ LG + ENG AL+ V S YD +
Sbjct: 787 KLLVADDNPVNRLLLITLLKKLGYEADYAENGAEALKAVLSDT-------------YDMV 833
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD +MP M+G+E T IR K + I+A+TA E+ + +GM+ + KP+
Sbjct: 834 FMDLQMPEMDGFETTAAIR-RLKGDASRPAIVAVTAFAQKEDMQMCLASGMNDFISKPV 891
>gi|374299669|ref|YP_005051308.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 1066
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 163/321 (50%), Gaps = 52/321 (16%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE + KS A SH+IR + GI G+ +L + G S+ + L + A+
Sbjct: 668 ARNEAEVANHAKSEFLAAMSHEIRTPMNGIIGMTDLALM-GGCDSKASSYLGFIKESAHS 726
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPSDGS 476
LL L+N ILD SKVE+G+M+L ++ FD+ + LE ++ A RKGVE+ + P
Sbjct: 727 LLELINDILDLSKVESGRMELEKKAFDLRKSLESLLQPLRLSAQRKGVELSWYVGPEVPE 786
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+L GD ++L+Q+ +NL+ NA+KFTS G I++ AIG + SR
Sbjct: 787 LL-----MGDDLRLRQVFTNLVGNALKFTSWGSITI--------AIGVAEAADSR----- 828
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
K + A ++E +++ T V DTG GIP +K + VFE++ +
Sbjct: 829 -------KTPEP--------GASQEEISLQAT--VSDTGIGIPPDKLQHVFESFATLGHD 871
Query: 597 E--GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
+ GGTGLGL I + LV +MGG I + + G+ G+ F F V LA E
Sbjct: 872 KEYGGTGLGLAITKKLVEIMGGTI-WAESQPGQ-GSVFGFTVRLA----------RASEA 919
Query: 655 ELAGGDSAAGDTQLQHMNLTV 675
E A + AAG + L + L +
Sbjct: 920 EPACSEQAAGQSGLMTVPLRI 940
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 983 EEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGL 1042
E+ G+ PLR ILVA+D+ + + V L +G V NG A+ L+ G
Sbjct: 925 EQAAGQSGLMTVPLR---ILVAEDNEINQLVMRDWLDEMGHMVICVPNGRKAIDLLSQG- 980
Query: 1043 NDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTAHISGEE 1101
+D + MD +MP M+G EATR IR + IPI+ALTA+ +
Sbjct: 981 ------------RFDLVFMDAQMPEMDGIEATRIIRRSPPQGVDPAIPIVALTAYALKGD 1028
Query: 1102 ADKTIEAGMDVHLGKPLNRDHL 1123
++ + AGMD +L KPL+ + L
Sbjct: 1029 RERFLAAGMDDYLSKPLDFEEL 1050
>gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
DM4]
gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
extorquens DM4]
Length = 703
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 135/289 (46%), Gaps = 50/289 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +AE ++ KS A SH++R L GI G+ +L ++ E T +
Sbjct: 169 EAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLL-LDTRLDPEQRTYVEAFRTSGK 227
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLGL++ ILD S++EAG++ L E FDV L+E VV+L P A KG+E+ LD +D
Sbjct: 228 ALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADD-- 285
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L +V GD +++QIL NL NA+KFT G + V SL+ S G
Sbjct: 286 LAALRV-GDADRVRQILVNLAGNAIKFTQAGGVGV-------------SLARSGEG---- 327
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
V+DTG GIP+E+ +FE + Q +
Sbjct: 328 -------------------------QGEGLVLTVEDTGPGIPEERIPILFEEFEQGDDSA 362
Query: 598 G--GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GTGLGL I + LV M G IE + RG+ FR + L E +
Sbjct: 363 SHEGTGLGLAITRRLVERMNGTIEA--RSTVGRGSTFRVVLPLPAAEGA 409
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 965 KTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGAT 1024
KTG S + ++ G+ Q RG+++L+A+D+ + +A L LGA
Sbjct: 547 KTGTSQ---PGPRQPAPVKTTPGKTGSIQTAARGRRVLLAEDNPINALLATKALERLGAQ 603
Query: 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN 1084
V +G AL A P+D L+D MP ++G E R+IR E
Sbjct: 604 VIHARDGLEALA------------AAEGQGPFDLALIDIRMPGLDGLETARRIRAREAET 651
Query: 1085 QVH-IPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+ ++ALTA+ E+ D AG D L KPLN
Sbjct: 652 GASPLHLVALTANTGREDVDAASAAGFDGFLPKPLN 687
>gi|256828314|ref|YP_003157042.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
gi|256577490|gb|ACU88626.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
Length = 955
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 142/293 (48%), Gaps = 49/293 (16%)
Query: 349 LCASLIKQMEATQQA-ERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET 407
L A I+ + A +QA E + +S A+ SH+IR + + G + L G +L
Sbjct: 408 LLAYNIETLSAQRQAAEAMAQTRSSFLASMSHEIRTPMTAVLGFLNLSLHLRAQG-QLRQ 466
Query: 408 NLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE 467
L ++N AN L+G++N ILD +K+EAGK++L + F+V LL+D DL A G E
Sbjct: 467 YLLKINAAANHLMGIINDILDLAKIEAGKVELEAKPFEVETLLQDTADLLVSGAFENGNE 526
Query: 468 VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
+V+ G +V GD ++LKQ+L NL SNAVKFT G +VR V
Sbjct: 527 LVVSVQPGLP---RRVTGDSLRLKQVLLNLSSNAVKFTHGG--TVRLAV----------- 570
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
A D V+ +A+ FEV DTG GI +F
Sbjct: 571 -------------------HAAADATPVH------DAVTLRFEVSDTGIGIDPAVLPRLF 605
Query: 588 ENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
++ Q GGTGLGL I + LV++MGGDI + + GE G+ F F V
Sbjct: 606 TSFEQADAATARVYGGTGLGLSISRRLVQIMGGDITVRSRP-GE-GSIFEFTV 656
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 93/166 (56%), Gaps = 17/166 (10%)
Query: 962 VLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHL 1021
VLL+ SS + ++ + + + QAQ G ++L+A+D++ + + + L
Sbjct: 790 VLLRQIASSDKSAALADAHTLADAPYDLEQAQ----GLRVLLAEDNLFNQELLGVILTEA 845
Query: 1022 GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEE 1081
G +E +NG A++ V G GAP D +LMD MP+M+G+EATR IR ++
Sbjct: 846 GVEMEIADNGAEAVRRVTEG-------GAP----LDVVLMDVHMPLMDGFEATRTIRNDQ 894
Query: 1082 KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ + +PIIA+TA I+ E+ + +EAGMD HL KP++ D L +
Sbjct: 895 RFSG--LPIIAMTADITAEDKARCLEAGMDDHLTKPVDTDELFRIL 938
>gi|451820423|ref|YP_007456624.1| sensor histidine kinase AruS [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451786402|gb|AGF57370.1| sensor histidine kinase AruS [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 631
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 144/289 (49%), Gaps = 55/289 (19%)
Query: 360 TQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDL 419
++ A+ + KS AN SH+IR L GI G+ +L + + SE NL + CA+ L
Sbjct: 140 SKAADSANKAKSEFLANMSHEIRTPLNGIIGMTDLT-LASNLSSEQRENLNIVKNCAHSL 198
Query: 420 LGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLK 479
L L+N+ILD SK+EA K+ + DF + EL+++VV P A +K +E+ D + K
Sbjct: 199 LSLINNILDLSKIEAEKVSIEHIDFKLDELIKNVVYTNIPKANQKYIEIHYDIDE----K 254
Query: 480 FSKVK-GDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
++ GD +L Q+L+NL+SNAVKFT +G + +
Sbjct: 255 IPEILIGDLHRLSQVLNNLISNAVKFTEKGFVLIE------------------------- 289
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK---- 594
V R +N E F V+D G GI K++ K +F+++ QV
Sbjct: 290 ----------------VKEVGRTKNFCEIEFAVEDLGIGISKDEMKLLFKSFSQVDGSIT 333
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
GGTGLGL I Q LV LMGG+I++ + ++G RF + + EA
Sbjct: 334 RKYGGTGLGLAISQKLVNLMGGEIKV----DSQKGIGSRFYFTIKLEEA 378
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 20/172 (11%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGER------SQAQKPLRGKKILVADDSMMLRRVAEIN 1017
+K + G GS Y ++EE E+ S + + + IL+ +D+ + + V +
Sbjct: 357 IKVDSQKGIGSRFYFTIKLEEAKEEKLDSTINSVSNCDEKEESILLVEDNSINKLVIKKM 416
Query: 1018 LRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076
L+ LG ++ NG AL+L L+D R +D ILMD +MP ++G E +
Sbjct: 417 LKELGYEKIKIASNGVEALKL----LDDNR---------FDIILMDIQMPELDGVETVKI 463
Query: 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
IR EK +H PIIA TA+ + +K + GMD ++ KP++ + L +K
Sbjct: 464 IRCNEKELGIHTPIIATTAYALKGDKEKFLSQGMDDYISKPVDINELGRILK 515
>gi|304309732|ref|YP_003809330.1| histidine kinase [gamma proteobacterium HdN1]
gi|301795465|emb|CBL43663.1| predicted histidine kinase [gamma proteobacterium HdN1]
Length = 920
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 144/332 (43%), Gaps = 57/332 (17%)
Query: 316 RALILLIVMTVGVLISMLTFVFKSARAARKEMH--------LCASLIKQMEATQQAERKS 367
R ++ I ++ + +F+S RA ++ L A + Q+AERK+
Sbjct: 395 RYWLIAIAFASLAMLGLAFALFRSNRARKRNAEELQAANQALLAIHTQLANEKQEAERKN 454
Query: 368 MNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSIL 427
KS AN SH+IR + + G +L G GS+ L+ +N LL L+N IL
Sbjct: 455 EAKSRFLANVSHEIRTPMNVVLGYSDLLQQTPGLGSDSRRALQVINRSGEHLLTLINDIL 514
Query: 428 DTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDR 487
D S++EAG +QL+E+DF + LL D+ +F + ++ + + ++GDR
Sbjct: 515 DVSRIEAGTIQLVEQDFCLQTLLMDLEVMFSERCQHQNTQLSIKAEPDT---HPDLRGDR 571
Query: 488 VKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKK 547
KL QIL NL+ NAVKFT +G I
Sbjct: 572 GKLLQILINLVGNAVKFTEQGQI------------------------------------- 594
Query: 548 ARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE---GGTGLGL 604
L VN + E V DTG GI E VF Y Q + G+ GTGLGL
Sbjct: 595 ----LLTVNTQPMGADQFELNIIVKDTGCGIAPEDYDKVFSLYQQTESGQRLGKGTGLGL 650
Query: 605 GIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
I + R MGGD +V + E+GT F +
Sbjct: 651 AISREFARRMGGD--LVFESEIEKGTTFYLRI 680
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
++IL+ DD+ R + L + NG++A+Q+ + P D
Sbjct: 708 RRILIVDDNENNRELLHKILLPFDFCLNEASNGQSAVQICQDW--------HP-----DL 754
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
ILMD MP M+G++A R+IR+ R+Q +PII LTA + +K+ + G + +L KP
Sbjct: 755 ILMDIRMPEMDGHQAIREIRKIHSRDQ--LPIIVLTAGTLAGDVEKSTQEGANDYLSKPF 812
Query: 1119 NRDHLMEAI 1127
D ++ I
Sbjct: 813 KADDVLSRI 821
>gi|298528196|ref|ZP_07015600.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511848|gb|EFI35750.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1287
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 179/379 (47%), Gaps = 79/379 (20%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A +QAE + KS AN SH+IR + I G+ L + +G + L +++ A
Sbjct: 621 LQAKEQAEAATQAKSEFLANMSHEIRTPMNAIIGISHLA-LRSGLDRRQHSYLTRIDGAA 679
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSD 474
LLG++N ILD SK+EA K++L F++ ++L + +F A K +++ LDP
Sbjct: 680 RSLLGIINDILDFSKIEANKLELEHVPFNLKDVLSRLSSIFDFQAEEKQLKLTFQLDPDT 739
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
LK GD ++L Q+L+NL+SNA+KFTS G I V +P S++ H
Sbjct: 740 PLSLK-----GDSMRLSQVLTNLISNAIKFTSHGEIVVSV---------SPGTSNTAHEA 785
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ-- 592
+ CL A+G N + F V D+G+G+ +++ +F+ + Q
Sbjct: 786 IP--ECL-----PAKG-----------YNQVCLMFSVRDSGQGMDQDQASRLFDAFFQAD 827
Query: 593 --VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
+ GGTGLGL I + LV +MGG I+ V + GE G+ F F V + +
Sbjct: 828 SSITRRFGGTGLGLSISKQLVEMMGGSIQ-VQSQPGE-GSTFSFTVHM--------EKTC 877
Query: 651 QGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIA 710
+ E+ + +S G T+ SLS G V+++
Sbjct: 878 ELEQHQSQTESHRGSTR------------KSLS------------------GRRVLVVED 907
Query: 711 NEERRRIAQKFMENLGINV 729
N R +A + M +LGINV
Sbjct: 908 NRSNRELAYELMTDLGINV 926
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 50/191 (26%)
Query: 964 LKTGNSSGEGSS------RYKQTEIEEEDGE----RSQAQKPLRGKKILVADDSMMLRRV 1013
++ + GEGS+ K E+E+ + R +K L G+++LV +D+ R +
Sbjct: 855 IQVQSQPGEGSTFSFTVHMEKTCELEQHQSQTESHRGSTRKSLSGRRVLVVEDNRSNREL 914
Query: 1014 AEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYE 1072
A + LG VE AC+ E + V+ P+D ILMD +MP M+GYE
Sbjct: 915 AYELMTDLGINVEVACDGLEGFKRAVQE--------------PFDLILMDIQMPGMDGYE 960
Query: 1073 ATRKIREEEKRNQ-----------VH--------------IPIIALTAHISGEEADKTIE 1107
ATR+IR + R + +H IPIIA+TAH + DK++
Sbjct: 961 ATRRIRSMDHRTEKMGQTSEVAEGIHESFSSLVPEPLNPGIPIIAMTAHAMAGDRDKSLN 1020
Query: 1108 AGMDVHLGKPL 1118
AGMD HL KP+
Sbjct: 1021 AGMDDHLTKPI 1031
>gi|218184380|gb|EEC66807.1| hypothetical protein OsI_33219 [Oryza sativa Indica Group]
Length = 942
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 172/327 (52%), Gaps = 35/327 (10%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
++I V +++ ++ ++ + + +E + ++ ++ +AE + KS A SH
Sbjct: 288 IMISSAVAIIVLLVGYIIYATLNSLEEAEDNYTTMRDLKG--RAEAADVAKSQFLATVSH 345
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND----LLGLLNSILDTSKVEAG 435
+IR + G+ G++++ +EL+T R V A + L+ L+N +LD +K+E+G
Sbjct: 346 EIRTPMNGVLGMLQMLM-----DTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESG 400
Query: 436 KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILS 495
K++L FDV ++L++VV LF + KG+E+ + SD + GD + +QI++
Sbjct: 401 KIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVP---DVLIGDPWRFRQIIT 457
Query: 496 NLLSNAVKFTSEGHISVRACV-----KKPSAIGNPS------LSSSRHGF-LQSISCLFY 543
NL+ N++KFT +GHI +R + +K A+ + S ++S++ ++S L
Sbjct: 458 NLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEV 517
Query: 544 KNKKARGDLEAVNAAQRDENAME---FTFEVDDTGKGIPKEKRKTVFENYVQ----VKEG 596
N R LE+ + +A++ V+DTG GI K+ + +F ++Q
Sbjct: 518 ANN--RKTLESFRMFKDSSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRT 575
Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDK 623
GGTG+GL I + LV LMGG+I V K
Sbjct: 576 YGGTGIGLSITKRLVELMGGEIGFVSK 602
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 30/153 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + R VA L+ GA V ++G+ A+ L PH
Sbjct: 792 LTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAIS----------RLQPPH--K 839
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEE------------------KRNQVHIPIIALTAHI 1097
+D MD +MP M+G+EATR +R E + H+PI+A+TA +
Sbjct: 840 FDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADV 899
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+ +E GMD ++ KP L A+ +
Sbjct: 900 IQATFEGCMECGMDGYVAKPFEEQQLYSAVAHF 932
>gi|110331743|dbj|BAE97709.1| cytokinin receptor histidine kinase [Oryza sativa Japonica Group]
gi|222612690|gb|EEE50822.1| hypothetical protein OsJ_31230 [Oryza sativa Japonica Group]
Length = 942
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 172/327 (52%), Gaps = 35/327 (10%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
++I V +++ ++ ++ + + +E + ++ ++ +AE + KS A SH
Sbjct: 288 IMISSAVAIIVLLVGYIIYATLNSLEEAEDNYTTMRDLKG--RAEAADVAKSQFLATVSH 345
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND----LLGLLNSILDTSKVEAG 435
+IR + G+ G++++ +EL+T R V A + L+ L+N +LD +K+E+G
Sbjct: 346 EIRTPMNGVLGMLQMLM-----DTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESG 400
Query: 436 KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILS 495
K++L FDV ++L++VV LF + KG+E+ + SD + GD + +QI++
Sbjct: 401 KIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVP---DVLIGDPWRFRQIIT 457
Query: 496 NLLSNAVKFTSEGHISVRACV-----KKPSAIGNPS------LSSSRHGF-LQSISCLFY 543
NL+ N++KFT +GHI +R + +K A+ + S ++S++ ++S L
Sbjct: 458 NLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEV 517
Query: 544 KNKKARGDLEAVNAAQRDENAME---FTFEVDDTGKGIPKEKRKTVFENYVQ----VKEG 596
N R LE+ + +A++ V+DTG GI K+ + +F ++Q
Sbjct: 518 ANN--RKTLESFRMFKDSSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRT 575
Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDK 623
GGTG+GL I + LV LMGG+I V K
Sbjct: 576 YGGTGIGLSITKRLVELMGGEIGFVSK 602
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 30/153 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + R VA L+ GA V ++G+ A+ L PH
Sbjct: 792 LTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAIS----------RLQPPH--K 839
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEE------------------KRNQVHIPIIALTAHI 1097
+D MD +MP M+G+EATR +R E + H+PI+A+TA +
Sbjct: 840 FDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADV 899
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+ +E GMD ++ KP L A+ +
Sbjct: 900 IQATFEGCMECGMDGYVAKPFEEQQLYSAVAHF 932
>gi|77359078|ref|YP_338653.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
gi|76873989|emb|CAI85210.1| putative sensor protein; similar to LuxQ in Vibrio harveyi, similar
to ArcB sensor in E. coli [Pseudoalteromonas
haloplanktis TAC125]
Length = 896
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 156/333 (46%), Gaps = 64/333 (19%)
Query: 309 LVHRTSKRALILLIVMTVGVLISML-TFVFKSARAARKEMHLCASLIKQMEATQQAERKS 367
L++ ++ +L + + V LIS+ T V + AR+ L + Q+A+ S
Sbjct: 472 LIYWLAQIVGMLFVWLLVAFLISVTGTNVQIREQVARQTRTL-------RQEKQKADEAS 524
Query: 368 MNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSIL 427
KS AN SH++R + GI GL L ++ + T + Q + LL +LN +L
Sbjct: 525 QIKSQFLANMSHEVRTPINGIKGLHYLA-LQQNDWQQARTYIEQADGALGVLLRVLNDLL 583
Query: 428 DTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDR 487
D SK+EAGK+ L++E D+G L E+V++L K +E+ LD + L + D
Sbjct: 584 DFSKMEAGKLDLMQEPVDIGRLAEEVINLIQFEVSVKSLEIKLDYDKNTNL---MINTDA 640
Query: 488 VKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKK 547
++LKQ+L NLL+NAVKFT++G I+++ K
Sbjct: 641 IRLKQVLLNLLNNAVKFTAQGSITLKIWQSK----------------------------- 671
Query: 548 ARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLG 603
M + V DTG GI KE +K +F + Q GGTGLG
Sbjct: 672 ----------------TMTY-LSVSDTGIGISKEAQKKLFRPFAQADNSTSRQYGGTGLG 714
Query: 604 LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
L I + LV LMGG I++ K +G+ F F++
Sbjct: 715 LSICKKLVELMGGAIDL--KSTAGQGSTFTFSL 745
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 68/127 (53%), Gaps = 15/127 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ + + VA L+ G + +G AA++++ YD +L
Sbjct: 776 VLLVEDNPLNQHVATAILKTKGCVADIANDGFAAIEMLTEK-------------SYDIVL 822
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP M+G +AT+ IR E + +PII L+A+ ++ K + GM+ ++ KP++
Sbjct: 823 MDIQMPKMDGLQATKVIRNE--LGLLDLPIIGLSANAHDDDVKKALACGMNSYITKPIDA 880
Query: 1121 DHLMEAI 1127
+ L +A+
Sbjct: 881 NILFKAL 887
>gi|410861408|ref|YP_006976642.1| sensor protein [Alteromonas macleodii AltDE1]
gi|410818670|gb|AFV85287.1| putative sensor protein [Alteromonas macleodii AltDE1]
Length = 1236
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 139/286 (48%), Gaps = 53/286 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP-GSELETNLRQMNVCA 416
+AT++A + S KS +N SH++R L G+ G L ++ P + E + M +
Sbjct: 501 KATEEARKASSVKSSFISNISHEMRTPLNGVVG--SLSLLKRQPLNDKAEQLVSMMEISC 558
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
N+L L+N +LD SK+EAGK+ + + F+ L+E + +F A KG+E+++D +
Sbjct: 559 NNLSVLINDVLDLSKIEAGKLDINHQLFEPLTLIESLAKVFAVKAATKGLELIVDTTG-- 616
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
L ++ DR +L Q+LSNLL+NA+KFT +GHI + A +
Sbjct: 617 -LPRVEINSDRHRLNQVLSNLLNNAIKFTEKGHIQLNAAL-------------------- 655
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
Y+N D + F V DTG GI E + +F + Q
Sbjct: 656 ------YEN---------------DAGLQQLHFSVSDTGVGIAPESQPKLFTAFTQADAS 694
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
V GGTGLGL I + L +L+GGDI K + G+ F F V L
Sbjct: 695 VATQYGGTGLGLSICKQLTQLLGGDITF--KSVVDVGSTFSFYVTL 738
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 988 ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
+ S Q + +L+ DD+++ R VA+ L L + C +GE + ++ R
Sbjct: 907 QTSDPQLSIGDANLLIVDDNLINREVAKGVLESLPGKMFTCCDGEEVIAFLQKCEKKGRR 966
Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH--IPIIALTAHISGEEADKT 1105
+ + ILMDC+MP M+GYE TR IR E K +H +PIIA+TA+ E +K
Sbjct: 967 IHS--------ILMDCQMPNMDGYETTRAIR-EGKAGPLHANVPIIAMTANAMLGEKEKC 1017
Query: 1106 IEAGMDVHLGKPLNRDHLMEAIK 1128
+EAGMD KP+ D L+ +K
Sbjct: 1018 LEAGMDDFTTKPVIADVLIPKVK 1040
>gi|345889627|ref|ZP_08840624.1| hypothetical protein HMPREF0178_03398 [Bilophila sp. 4_1_30]
gi|345039416|gb|EGW43747.1| hypothetical protein HMPREF0178_03398 [Bilophila sp. 4_1_30]
Length = 1084
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 132/268 (49%), Gaps = 53/268 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE S KS AN SH+IR + GI G+ L ++ S L Q++ AN
Sbjct: 556 AKEEAETASRAKSDFLANMSHEIRTPMNGIIGMSHLT-LQTELTSRQRDYLTQISTSANT 614
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGS 476
LL ++N ILD SK+EAGK+++ DF + ++LE+V + A KG+E++ + P
Sbjct: 615 LLRIVNDILDFSKIEAGKLEMEHADFQLEQVLEEVASIADLSAAEKGLELLSRISPDVPP 674
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
VL +GD ++L QIL NL+ NA+KFT GH+ V S++ RH
Sbjct: 675 VL-----EGDALRLSQILLNLVGNAIKFTQSGHVLV-------------SVTQERH---- 712
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+ K R F V DTG G+ E+ +FE++ Q
Sbjct: 713 -------EGSKTR-----------------LRFSVSDTGIGMTSEQIGNLFESFTQADNS 748
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEI 620
GGTGLGL I + LV LMGG+I +
Sbjct: 749 TTRRYGGTGLGLAICKRLVNLMGGEIHV 776
Score = 72.4 bits (176), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 19/157 (12%)
Query: 978 KQTEIEEEDGERSQAQKP-LRGKKILVADDSMMLRRVAEINLRHLGATVEACENG-EAAL 1035
+Q + + E S A P L G ++L+A+D+ + R+VA L+ G +VE +G EA
Sbjct: 936 EQPQDRPDRAEPSTAPFPELMGARVLLAEDNAINRQVANEILQSSGVSVEPAGDGLEAVE 995
Query: 1036 QLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA 1095
+L G YD +LMD +MP M+G +ATR +RE + + ++PIIA+TA
Sbjct: 996 KLWEGG--------------YDAVLMDIQMPGMDGLKATRILREYARFD--NLPIIAMTA 1039
Query: 1096 HISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYLH 1131
H + +K++ GM ++ KP+ L+ + +++H
Sbjct: 1040 HAMNGDREKSLSVGMQDYIAKPIEPSVLLSTLARWIH 1076
>gi|393770522|ref|ZP_10359010.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
gi|392724066|gb|EIZ81443.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
Length = 887
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 130/285 (45%), Gaps = 54/285 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGL--IELCYVEAGPGSELETNLRQMNVC 415
EA AE S KS AN SH++R L+ + G + E L +L ++
Sbjct: 373 EARDAAEEHSRAKSRFLANMSHELRTPLSAVIGYSEMLEEEAEELGQESLLKDLGKIKSN 432
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
A LLGL+N +LD SKVEA KM+L ED DV D + +KG +VLD +D
Sbjct: 433 AQHLLGLINDVLDLSKVEAEKMELDLEDIDVAAFTRDAAGTVEALVRKKGNVLVLDIADD 492
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ + + D VKL+Q L NLLSNA KFT G I++RA
Sbjct: 493 A----GRARTDAVKLRQCLFNLLSNAAKFTEGGTITLRA--------------------- 527
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
++ GD F V+DTG G+ E+ +FE + Q E
Sbjct: 528 -------RRDTDGAGDW--------------LRFTVEDTGIGMSTEQVGRLFERFTQADE 566
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL + ++ +L+GGDI +V + +GTCF V
Sbjct: 567 TTTRRFGGTGLGLALSRAFAQLLGGDITVVSRAG--QGTCFTLRV 609
>gi|255573224|ref|XP_002527541.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223533091|gb|EEF34850.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 1011
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 144/308 (46%), Gaps = 37/308 (12%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E +AE + KS A SH+IR + GI G++ L ++ S + C
Sbjct: 378 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALL-LDTDLSSTQRDYAQTAQACGK 436
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
L+ L+N +LD +K+EAGK++L FD+ +L+DV+ LF + KG+E+ + SD
Sbjct: 437 ALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGIELAVFVSDKVP 496
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS-----AIGNPSLSSSRH 532
V GD + +QI++NL+ N+VKFT GHI V+ + + + A + L+
Sbjct: 497 ---EIVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLDENAKATAFAKADSCLNGGSS 553
Query: 533 GFLQSISCLF-----YKNKKARGDLEAVNAAQRDENA-----------------MEFTFE 570
+ S SC F ++ R EA DE+ +
Sbjct: 554 DVIVSDSCQFKTLSGFEAADDRNGWEAFKHLVADEDFQSNGSLNVLTTNDACENVTLVVS 613
Query: 571 VDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENG 626
V+DTG GIP + VF ++Q GGTG+GL I + LV LMGG I V +
Sbjct: 614 VEDTGIGIPLHAQDRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGHISFVSRP-- 671
Query: 627 ERGTCFRF 634
+ G+ F F
Sbjct: 672 QVGSTFSF 679
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 30/153 (19%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q L GKKILV DD+M+ RRVA L+ GA VE ++G+AAL+L L PH
Sbjct: 859 QSLLYGKKILVVDDNMVNRRVAAGALKKFGANVECADSGKAALKL----------LQLPH 908
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEE------------------KRNQVHIPIIALT 1094
+D MD +MP M+G+EATR+IR+ E ++ + H+PI+A+T
Sbjct: 909 --SFDACFMDIQMPEMDGFEATRRIRQMESQANEQINGQSMAEGGAARKGEWHVPILAMT 966
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
A + D+ +++GMD ++ KP ++L +A+
Sbjct: 967 ADVIHATYDECLKSGMDGYVSKPFEEENLYQAV 999
>gi|225375400|ref|ZP_03752621.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM
16841]
gi|225212736|gb|EEG95090.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM
16841]
Length = 954
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 163/330 (49%), Gaps = 53/330 (16%)
Query: 321 LIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHD 380
LIV+ + ++ S+L +F + + + + +EA QA R + KS A SH+
Sbjct: 518 LIVIFILLVASILFMIFWQEARRKSYLKIAEKNEQLLEAVDQANRANQAKSDFLARMSHE 577
Query: 381 IRAALAGITGLIELC-YVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQL 439
IR + I GL E+ + E P ++E L +++V + LL ++N ILD S +E KM++
Sbjct: 578 IRTPMNAIVGLTEIAKHYEDDP-KKIEDYLDKIDVSSKVLLNIINDILDMSSIENKKMKI 636
Query: 440 IEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLS 499
+E FD+ E+L V ++ P +KG +V + D V + + GD +++ QIL NL+S
Sbjct: 637 AKEPFDLHEILMSVCTIYEPQCRQKG--IVFEVQDEEVTH-TYLIGDGLRVNQILLNLVS 693
Query: 500 NAVKFTSE-GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAA 558
NA KFTS G I+++ + L+ K +KA
Sbjct: 694 NAYKFTSSGGKITIK------------------------VKELYVKEEKAY--------- 720
Query: 559 QRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLM 614
F F V+DTG+G+ +E + +F+ + Q + GG+GLGL I ++ V LM
Sbjct: 721 --------FNFLVEDTGEGMSEEMQTRLFQPFEQESATTAQKHGGSGLGLSIAKNFVELM 772
Query: 615 GGDIEIVDKENGERGTCFRFNVFLAIREAS 644
G I + K+ GE GT F ++ +A+
Sbjct: 773 SGSISVKSKK-GE-GTTFVVSIPFEFEQAA 800
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 10/143 (6%)
Query: 988 ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
+ QA GKK+L+A+D+ VA L + V+ NG+ A++L
Sbjct: 817 QEEQAVYDFAGKKVLLAEDTAFNEEVATELLAMVHMDVDCAHNGKEAVELFEKA------ 870
Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE 1107
P Y ILMD MP+MNGYEA R IR+ E+ + I I A+TA+ E+ +
Sbjct: 871 --KPG--TYMAILMDIHMPVMNGYEAARTIRKSEREDAGTIAIYAMTANSFEEDVSAALN 926
Query: 1108 AGMDVHLGKPLNRDHLMEAIKYL 1130
AGM+ H+ KP++ L E + L
Sbjct: 927 AGMNGHIAKPIDAQILYEVLDKL 949
>gi|148652199|ref|YP_001279292.1| multi-sensor hybrid histidine kinase [Psychrobacter sp. PRwf-1]
gi|148571283|gb|ABQ93342.1| multi-sensor hybrid histidine kinase [Psychrobacter sp. PRwf-1]
Length = 1157
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 146/293 (49%), Gaps = 31/293 (10%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R A EM + I+ EA QA S KS AN SH++R L I G I L
Sbjct: 343 RDAFDEMEMQNIFIR--EARDQAISSSQAKSAFLANISHELRTPLNSIDGFINLLARHGD 400
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
+E + ++ + + LL L+N +LD SK+EAGK+ L + +F + + DV+D+ P+
Sbjct: 401 LTAEQDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLVLDKHEFSLYSAIYDVMDMLSPL 460
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVK----GDRVKLKQILSNLLSNAVKFTSEGHISVRACV 516
A KG+ + +VL ++ V GD +++KQ+L+NL+ NA+KFT G + VR +
Sbjct: 461 AAEKGLRM-------AVLYYNDVPNTIIGDALRVKQVLTNLVGNAIKFTDVGEVVVRVGI 513
Query: 517 KKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGK 576
+ I + S+ I +A+ V A +D + + DTG
Sbjct: 514 DE---IEDASV----------IEASGQAEDEAKSHHAKV-ATDKDNSGSMIHIAIQDTGH 559
Query: 577 GIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN 625
G+ ++ + +F+++ Q + GGTGLGL I + L +LMGG I D +N
Sbjct: 560 GLSEKAKSQLFKSFSQGDPSITRQYGGTGLGLVISKQLTKLMGGKIGFYDNDN 612
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 30/162 (18%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV-------------RSGLN 1043
+G IL DD + V + L LG V +G A++++ + L
Sbjct: 821 QGVTILAVDDHLPNLLVLDALLSELGIKVITANSGYDAVEIIGKQLMYDTYDSEQAAALE 880
Query: 1044 DQRDLGAPH-----ILPY-----DYILMDCEMPIMNGYEATRKIRE-------EEKRNQV 1086
D+ P LP D + MD +MP M+G EA +KIR+ E K
Sbjct: 881 DKETGATPKDAQSSSLPVQPTTIDLVFMDVQMPRMSGDEAAKKIRQLEADAQKEHKNYHK 940
Query: 1087 HIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+PIIALTAH + DK I AG+D ++GKP++R L++ ++
Sbjct: 941 RLPIIALTAHGLADGKDKFIAAGIDDYVGKPISRPQLLQILQ 982
>gi|428217660|ref|YP_007102125.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
sp. PCC 7367]
gi|427989442|gb|AFY69697.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
sp. PCC 7367]
Length = 892
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 138/285 (48%), Gaps = 33/285 (11%)
Query: 351 ASLIKQMEATQ-QAERKSMNKSLAFANASHDIRAALAGITGLIELCY------VEAGPGS 403
A LI Q+EA Q + KS AN SH++R + I G ++ +
Sbjct: 601 AQLINQIEAQNAQLLEATQLKSQFLANMSHELRTPMNAIIGFSQVLLRQRRDSLSENQQD 660
Query: 404 ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
LE LR LL L+N ILD SK+EAG+M+ E F + EL++ D P+A
Sbjct: 661 MLERILRN----GKSLLELINDILDLSKIEAGRMEASPEFFHLDELIQHTCDSLQPLASN 716
Query: 464 KGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG 523
KG+ + G + D V+++Q+++NL+SNA+KFT G + V +P I
Sbjct: 717 KGLNFFFNNQIGR----CTIYHDPVRVRQVITNLVSNAIKFTDHGDVKVVLHYSQPEPIA 772
Query: 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME----FTFEVDDTGKGIP 579
N R G +++ +E +N Q D N ++ +V DTG GI
Sbjct: 773 NS--EDDRDG------QFIHQSSVELDHIEHLN--QADSNKLDRQPPVIIDVCDTGIGID 822
Query: 580 KEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEI 620
E ++T+FE + QV + GGTGLGL I + LV +MGG+I +
Sbjct: 823 AEHQRTIFEQFRQVDQSSTRRHGGTGLGLAITEQLVHMMGGEISL 867
>gi|359454048|ref|ZP_09243343.1| sensor protein [Pseudoalteromonas sp. BSi20495]
gi|358048999|dbj|GAA79592.1| sensor protein [Pseudoalteromonas sp. BSi20495]
Length = 671
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 153/323 (47%), Gaps = 69/323 (21%)
Query: 318 LILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANA 377
LI ++ G I + V K R R+E Q+A+ S KS AN
Sbjct: 265 LITFLISVTGTNIQIREQVAKQTRVLRQE-------------KQKADEASHIKSQFLANM 311
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKM 437
SH++R + GI GL L ++ + T + Q + LL +LN +LD SK+EAGK+
Sbjct: 312 SHEVRTPINGIKGLHYLA-LQQNDWPQARTYIEQADGALGVLLRVLNDVLDFSKMEAGKL 370
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
L++E +VG L+++V +L K +E+ LD + L + D ++LKQIL NL
Sbjct: 371 DLVQEPINVGRLVDEVTNLMQFEVDVKSLELHLDYDKTTNL---TIHTDPIRLKQILLNL 427
Query: 498 LSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNA 557
L+NAVKFT++G I+++ +++KK
Sbjct: 428 LNNAVKFTAQGCITLKV----------------------------WQSKK---------- 449
Query: 558 AQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRL 613
M + F V+DTG GI + +K +F+ + Q GGTGLGL I + LV L
Sbjct: 450 -------MTY-FSVNDTGIGISEAAQKQLFKPFSQADSSTSRQYGGTGLGLSICKKLVEL 501
Query: 614 MGGDIEIVDKENGERGTCFRFNV 636
MGG I++ E +G+ F F+V
Sbjct: 502 MGGAIDLASHEG--KGSTFTFSV 522
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 978 KQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
K +++++ E K+L+ +D+ + + VA L+ G + +G A+++
Sbjct: 530 KAEQVQQQYNEIDVESLSFTDYKLLLVEDNSLNQHVASAILKTKGCVADIASDGFEAIKM 589
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
+ + YD +LMD +MP M+G +AT+ IR + + +PII L+A+
Sbjct: 590 LTTN-------------SYDIVLMDIQMPNMDGLQATKVIRND--LGLIDLPIIGLSANA 634
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ K + GMD ++ KP++ + L + +
Sbjct: 635 HDDDVKKAVACGMDNYITKPIDANTLFKTL 664
>gi|413934338|gb|AFW68889.1| putative histidine kinase family protein [Zea mays]
Length = 1201
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 151/305 (49%), Gaps = 37/305 (12%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E QAE + KS A SH+IR + G+ G++++ +EL+T + V A
Sbjct: 585 ELKGQAEAADIAKSQFLATVSHEIRTPMNGVLGMLQMLM-----DTELDTTQQDFVVTAQ 639
Query: 418 D----LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ L+ L+N +LD +K+E+G+++L FDV ++L++V+ LF+ + KG+E+ + S
Sbjct: 640 ESGKVLINLINEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYDKSQAKGIELAVLVS 699
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRA-CVKKPSAIGNPSLSSSRH 532
D + GD + +QI++NL+ N++KFT +GHI V+ VK+ + GN S H
Sbjct: 700 DQVP---DVLIGDPWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELNRKGNNFCDVSAH 756
Query: 533 G---FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEF------------TFEVDDTGKG 577
S + + + LE ++ + EN F V+DTG G
Sbjct: 757 NREILYDSDNSMLWNTLSG---LEVADSWRSLENFTMFKNSNGETDTIRLAVRVEDTGIG 813
Query: 578 IPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFR 633
I K+ + +F ++Q GGTG+GL I + LV LMGG+I K G+ F
Sbjct: 814 ITKDAQMRIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSG--VGSTFS 871
Query: 634 FNVFL 638
F
Sbjct: 872 FTAIF 876
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 30/156 (19%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q L GK+ILV DD+ + R+VA +L+ G+ V ++G A+ +++ PH
Sbjct: 1051 QSVLTGKQILVVDDNAVNRKVAAGSLKKYGSKVTCVDSGSDAIDMLK----------PPH 1100
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEK------------------RNQVHIPIIALT 1094
+D MD +MP M+G+EATR IR EK + H+PI+A+T
Sbjct: 1101 --TFDACFMDVQMPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMT 1158
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
A + +K ++ GMD ++ KP L A+ +
Sbjct: 1159 ADVIQATFEKCMQCGMDGYVSKPFEEQQLYFAVAHF 1194
>gi|424911053|ref|ZP_18334430.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392847084|gb|EJA99606.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 1224
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 136/291 (46%), Gaps = 63/291 (21%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN----VCAN 417
+AE KS AN SH+IR + G+ G+ EL S L+T + N
Sbjct: 665 RAEAADRAKSEFLANMSHEIRTPMNGVLGMAELL-----AKSNLDTRQKTFTDIIVKSGN 719
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDG 475
LL ++N ILD SK+EAG+M+L FD E +EDVV L A+ K +E+V +DPS
Sbjct: 720 ALLTIINDILDFSKIEAGQMKLRSVSFDPAEAVEDVVSLLSSAALEKNIELVVRIDPS-- 777
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
F KV GD + +QI++NL+ NAVKFT GH+ V + A
Sbjct: 778 ---VFGKVIGDAGRFRQIVTNLVGNAVKFTETGHVLVELSAQSAEAS------------- 821
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
EA+ + V+D+G GIP +K +T+F+ + QV
Sbjct: 822 -----------------EAI-----------LSLRVEDSGIGIPSDKLETIFDKFSQVDS 853
Query: 596 G----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GTGLGL I LV L G I++V E G +G+ F N+ + E
Sbjct: 854 SATRRHEGTGLGLAITVGLVGLFNGKIDVV-SEVG-KGSSFEVNIPFQMTE 902
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 1059 ILMDCEMPIMNGYEATRKIREEE--KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
ILMD MP+MNG++AT+ IR E H+PII +TAH + D ++AGMD +L K
Sbjct: 1135 ILMDVSMPVMNGHQATQAIRTAELAAAEGRHVPIIGVTAHTQDADRDLCLQAGMDDYLSK 1194
Query: 1117 PLNRDHLMEAI 1127
P++ + L + I
Sbjct: 1195 PISPEILEDKI 1205
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQKPL----RGKKILVADDSMMLRRVAEINLRHLGATVE 1026
G+GSS + I + ER + PL ++LV DD+ + RR+ L+
Sbjct: 887 GKGSS--FEVNIPFQMTERRRDVPPLSVAIENIRVLVIDDNDVNRRILTEQLQSWCIDGH 944
Query: 1027 ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV 1086
A E G + +++ A L D I++D MP+MNG + +IR + + + +
Sbjct: 945 AVEGGPTGIAVLQEA--------AAVGLSIDAIILDYHMPVMNGLDVVERIRADRRFDDI 996
Query: 1087 HIPIIALTAHISGEEADKTIEAGMDVHLGKP----LNRDHLMEAIK 1128
I I + + G+E T + + HL KP L R L + ++
Sbjct: 997 AI-IFLTSMDVVGDETLFT-DLNVQAHLMKPARARLLRSTLFDVVR 1040
>gi|404448563|ref|ZP_11013556.1| multi-sensor hybrid histidine kinase [Indibacter alkaliphilus LW1]
gi|403766184|gb|EJZ27059.1| multi-sensor hybrid histidine kinase [Indibacter alkaliphilus LW1]
Length = 1077
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 154/313 (49%), Gaps = 54/313 (17%)
Query: 343 ARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPG 402
+K L SLIK A ++AE + +KS AN SH+IR L G+ G +L +
Sbjct: 423 VKKRTELERSLIK---AKEEAEAANRSKSEFLANMSHEIRTPLNGVIGFTDLL-INTDLN 478
Query: 403 SELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAM 462
+E + N A+ LLG++N ILD SK+EAGK++L E + D+ EL E D+
Sbjct: 479 NEQLQYVTSANTSAHSLLGIINDILDFSKIEAGKLELEEVETDLIELAEQTADIVKYNTA 538
Query: 463 RKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI 522
+K +E +L+ + ++ V D+++LKQIL NLLSNA+KFT +G + + I
Sbjct: 539 KKNIEFLLNIQ-VDIPRYIIV--DQIRLKQILVNLLSNAIKFTEKGEVELN--------I 587
Query: 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK 582
G + DE +FTF V DTG GI +E+
Sbjct: 588 GYEPV---------------------------------DEKEGKFTFTVKDTGIGISEEQ 614
Query: 583 RKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
++ +F+++ Q GGTGLGL I Q L M I +++ E G +G+ F F++
Sbjct: 615 KQKLFKSFSQADSSTTRKFGGTGLGLVISQMLAEKMDSQI-VLESELG-KGSSFSFSLQK 672
Query: 639 AIREASANDNNTQ 651
A + S + T+
Sbjct: 673 AFKTKSEHQAQTE 685
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 991 QAQKPLRGKKILVADD---SMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
Q QKP KIL+A+D +M+L + N +EA EA Q +
Sbjct: 831 QNQKPANAMKILIAEDVSLNMLLLKTVIRNYYPEAKIIEAQNGQEAITQYKKEN------ 884
Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE 1107
P D I MD +MP+ +G+EATR+IRE E + + +PI+ALTA E + +
Sbjct: 885 -------P-DLIFMDVQMPVKDGFEATREIRELETKTKSRVPIVALTAGALQSERENCMN 936
Query: 1108 AGMDVHLGKPLNRDHLMEAIKYL 1130
AGMD L KP+ ++ L+E + +
Sbjct: 937 AGMDHFLTKPIEKEKLLEVTELI 959
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 991 QAQKPLRG-KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
QAQ KK+L+ DD+ R + + L H E +NG AAL L+ G
Sbjct: 681 QAQTEFTNIKKVLIIDDNKNNRTILKDILGHWNIQSETVDNGIAALTLLDEGAE------ 734
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTI-E 1107
+D ++D MP M+G R+I++ + ++ P I L + + DK + E
Sbjct: 735 ------FDIFIVDYHMPFMDGISTIREIKKLIAKKELDRQPKIILYSSADDAQLDKHVKE 788
Query: 1108 AGMDVHLGKP 1117
+DV L KP
Sbjct: 789 LSIDVKLIKP 798
>gi|333368314|ref|ZP_08460522.1| multi-sensor hybrid histidine kinase [Psychrobacter sp. 1501(2011)]
gi|332977501|gb|EGK14274.1| multi-sensor hybrid histidine kinase [Psychrobacter sp. 1501(2011)]
Length = 1148
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 147/297 (49%), Gaps = 42/297 (14%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R A EM + I+ EA QA S KS AN SH++R L I G I L
Sbjct: 340 RDAFDEMEMQNIFIR--EARDQAVSSSQAKSAFLANISHELRTPLNSIDGFINLLARHGD 397
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
+E + ++ + + LL L+N +LD SK+EAGK+ L + +F + + DV+D+F P+
Sbjct: 398 LTAEQDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLVLDKHEFSLYSAIYDVMDMFSPL 457
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVK----GDRVKLKQILSNLLSNAVKFTSEGHISVRAC- 515
A KG+ + +V+ ++ V GD +++KQ+L+NL+ NA+KFT G + +R
Sbjct: 458 AAEKGLRM-------AVMYYNDVPNTIIGDALRVKQVLTNLVGNAIKFTDVGEVVIRVGI 510
Query: 516 --VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDD 573
V+ + I PS S ++ + + + +M + D
Sbjct: 511 DEVEDVTVIDMPSEQDS---------------------IKVEDQSSQPSGSM-IHIAIQD 548
Query: 574 TGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENG 626
TG G+ ++ + +F+++ Q + GGTGLGL I + L RLMGG+I + +N
Sbjct: 549 TGHGLSEQAKSYLFKSFSQGDPSITRQYGGTGLGLVISKQLTRLMGGNIGFYNNDNA 605
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 23/155 (14%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR----------SGLNDQR 1046
+G +L DD + V + L LG V +G A+ ++ S ++ +
Sbjct: 811 QGVTVLAVDDHLPNLLVLDALLSELGIKVITANSGYDAVDIISKQIMYDTYEPSDVSIDQ 870
Query: 1047 DLGAPHILP------YDYILMDCEMPIMNGYEATRKIRE-EEKRNQVH------IPIIAL 1093
D+ A + D + MD +MP M+G EA +KIR+ EE + H +PIIAL
Sbjct: 871 DVDAAKNVKKGKNAKIDLVFMDVQMPRMSGDEAAKKIRQLEEDAQKQHPNYHKRLPIIAL 930
Query: 1094 TAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
TAH + DK I AG+D ++GKP++R L++ ++
Sbjct: 931 TAHGLADGKDKLIAAGIDDYVGKPISRPQLLQILQ 965
>gi|118790684|tpd|FAA00249.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 1187
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 172/327 (52%), Gaps = 35/327 (10%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
++I V +++ ++ ++ + + +E + ++ ++ +AE + KS A SH
Sbjct: 533 IMISSAVAIIVLLVGYIIYATLNSLEEAEDNYTTMRDLKG--RAEAADVAKSQFLATVSH 590
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND----LLGLLNSILDTSKVEAG 435
+IR + G+ G++++ +EL+T R V A + L+ L+N +LD +K+E+G
Sbjct: 591 EIRTPMNGVLGMLQMLM-----DTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESG 645
Query: 436 KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILS 495
K++L FDV ++L++VV LF + KG+E+ + SD + GD + +QI++
Sbjct: 646 KIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVP---DVLIGDPWRFRQIIT 702
Query: 496 NLLSNAVKFTSEGHISVRACV-----KKPSAIGNPS------LSSSRHGF-LQSISCLFY 543
NL+ N++KFT +GHI +R + +K A+ + S ++S++ ++S L
Sbjct: 703 NLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEV 762
Query: 544 KNKKARGDLEAVNAAQRDENAME---FTFEVDDTGKGIPKEKRKTVFENYVQ----VKEG 596
N R LE+ + +A++ V+DTG GI K+ + +F ++Q
Sbjct: 763 ANN--RKTLESFRMFKDSSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRT 820
Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDK 623
GGTG+GL I + LV LMGG+I V K
Sbjct: 821 YGGTGIGLSITKRLVELMGGEIGFVSK 847
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 30/153 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + R VA L+ GA V ++G+ A+ L PH
Sbjct: 1037 LTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAIS----------RLQPPH--K 1084
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEE------------------KRNQVHIPIIALTAHI 1097
+D MD +MP M+G+EATR +R E + H+PI+A+TA +
Sbjct: 1085 FDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADV 1144
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+ +E GMD ++ KP L A+ +
Sbjct: 1145 IQATFEGCMECGMDGYVAKPFEEQQLYSAVAHF 1177
>gi|427421060|ref|ZP_18911243.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425756937|gb|EKU97791.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 642
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 141/289 (48%), Gaps = 57/289 (19%)
Query: 350 CASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE--LET 407
A L++ MEA + A R KS AN SH++R L I G E+ EA + +
Sbjct: 384 TAELVEAMEAAESATR---TKSTFLANMSHELRTPLNSIIGYSEILQEEAEMNGDQSMVP 440
Query: 408 NLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE 467
+LR++ + LL L+NSILD SK+EAG+M+L E + EL+ DV+D HPVA K +
Sbjct: 441 DLRKIQGSSKHLLNLINSILDLSKIEAGRMELHLEPVHIAELIRDVMDTIHPVADAKHNK 500
Query: 468 VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
VV++ ++ + V+ D KL+Q L NLLSNA KFT G +++
Sbjct: 501 VVIE----NLSEVESVESDADKLRQCLLNLLSNANKFTENGQLTL--------------- 541
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
++ + Y+ E+ +E T V DTG G+ K++ +F
Sbjct: 542 ---------TVKTIHYQT----------------EDYLELT--VADTGIGMEKDQLDKIF 574
Query: 588 ENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
E + Q GGTGLGL I + VR++ G I + N +G+ F
Sbjct: 575 EAFTQADLSSTRRYGGTGLGLTITREFVRMLNGTISAQSEVN--KGSTF 621
>gi|110288960|gb|AAP53311.2| histidine kinase 3, putative, expressed [Oryza sativa Japonica
Group]
Length = 1186
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 172/327 (52%), Gaps = 35/327 (10%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
++I V +++ ++ ++ + + +E + ++ ++ +AE + KS A SH
Sbjct: 549 IMISSAVAIIVLLVGYIIYATLNSLEEAEDNYTTMRDLKG--RAEAADVAKSQFLATVSH 606
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND----LLGLLNSILDTSKVEAG 435
+IR + G+ G++++ +EL+T R V A + L+ L+N +LD +K+E+G
Sbjct: 607 EIRTPMNGVLGMLQMLM-----DTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESG 661
Query: 436 KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILS 495
K++L FDV ++L++VV LF + KG+E+ + SD + GD + +QI++
Sbjct: 662 KIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVP---DVLIGDPWRFRQIIT 718
Query: 496 NLLSNAVKFTSEGHISVRACV-----KKPSAIGNPS------LSSSRHGF-LQSISCLFY 543
NL+ N++KFT +GHI +R + +K A+ + S ++S++ ++S L
Sbjct: 719 NLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEV 778
Query: 544 KNKKARGDLEAVNAAQRDENAME---FTFEVDDTGKGIPKEKRKTVFENYVQ----VKEG 596
N R LE+ + +A++ V+DTG GI K+ + +F ++Q
Sbjct: 779 ANN--RKTLESFRMFKDSSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRT 836
Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDK 623
GGTG+GL I + LV LMGG+I V K
Sbjct: 837 YGGTGIGLSITKRLVELMGGEIGFVSK 863
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + R VA L+ GA V ++G+ A+ L PH
Sbjct: 1053 LTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAIS----------RLQPPH--K 1100
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR 1083
+D MD +MP M+G+EATR +R E +
Sbjct: 1101 FDACFMDVQMPEMDGFEATRLVRSVESK 1128
>gi|414071106|ref|ZP_11407081.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
gi|410806494|gb|EKS12485.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
Length = 894
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 159/318 (50%), Gaps = 58/318 (18%)
Query: 323 VMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIR 382
++ V +LI+ L V + R+++ +++Q + Q+A+ S KS AN SH++R
Sbjct: 482 MLFVWLLITFLISVTGTNIQIREQVAKQTRVLRQEK--QKADEASHIKSQFLANMSHEVR 539
Query: 383 AALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEE 442
+ GI GL L ++ + T + Q + LL +LN +LD SK+EAGK+ L++E
Sbjct: 540 TPINGIKGLHYLA-LQQNDWPQARTYIEQADGALGVLLRVLNDVLDFSKMEAGKLDLVQE 598
Query: 443 DFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAV 502
+VG L+++V +L K +E+ LD + L + D ++LKQIL NLL+NAV
Sbjct: 599 PINVGRLVDEVTNLMQFEVDVKSLELHLDYDKTTNL---TIHTDPIRLKQILLNLLNNAV 655
Query: 503 KFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562
KFT++G I+++ +++KK
Sbjct: 656 KFTAQGCITLKV----------------------------WQSKK--------------- 672
Query: 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDI 618
M + F V+DTG GI + +K +F+ + Q GGTGLGL I + LV LMGG I
Sbjct: 673 --MTY-FSVNDTGIGISEAAQKQLFKPFSQADSSTSRQYGGTGLGLSICKKLVELMGGAI 729
Query: 619 EIVDKENGERGTCFRFNV 636
++ E +G+ F F+V
Sbjct: 730 DLASHEG--KGSTFTFSV 745
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 978 KQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
K +++++ E K+L+ +D+ + + VA L+ G + +G A+++
Sbjct: 753 KAEQVQQQYNEIDVESLSFTDYKLLLVEDNSLNQHVASAILKTKGCVADIASDGFEAIKM 812
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
+ + YD +LMD +MP M+G +AT+ IR + + +PII L+A+
Sbjct: 813 LTTN-------------SYDIVLMDIQMPNMDGLQATKVIRND--LGLIDLPIIGLSANA 857
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ K + GMD ++ KP++ + L + +
Sbjct: 858 HDDDVKKAVACGMDNYITKPIDANTLFKTL 887
>gi|168038964|ref|XP_001771969.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162676751|gb|EDQ63230.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1040
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 158/306 (51%), Gaps = 44/306 (14%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
Q+AE+ S KS AN SH+IR + GI GL L +E+ ++ + +L + CA+ LL
Sbjct: 451 QKAEQASHAKSDFLANMSHEIRTPIHGILGLTAL-LMESELTTDQKESLESVKECADLLL 509
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
++NS+LD +K+EAG++++ + F++ +++ + + A ++G++++ + D +V +
Sbjct: 510 HIINSVLDLAKIEAGRLEVEKVSFNIRKMVSSTLRMLQARAQQRGLQLLWE-VDKAVPQM 568
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP------------SAIGNPSLS 528
+ GD KL+Q L NL+ NA+KFT +G ++V V S +GN S
Sbjct: 569 --LVGDVGKLQQCLINLVGNALKFTHKGSVTVSVKVAAEGTVMPLVTDVGDSGLGNRVTS 626
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
SS L++ C N FEV DTG GI +EK + +F+
Sbjct: 627 SSGDLSLENPQCFLVSNL--------------------LEFEVRDTGIGISQEKLQDMFK 666
Query: 589 NYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN--VFLAIRE 642
+ Q GGTGLGL IV V L+GG I + E G +G+ F F +FL + +
Sbjct: 667 PFTQADASTSRLYGGTGLGLCIVHRFVELLGGTIW-AESEMG-KGSAFHFRLPLFLHVPQ 724
Query: 643 ASANDN 648
S +++
Sbjct: 725 ESPSES 730
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 75/131 (57%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+A+D+ + ++VA L G V +G+ A+ ++ S ++ +D +L
Sbjct: 914 ILLAEDNAINQKVASRQLEKHGHVVTIVGDGQQAVDVICSRHDE-----------FDLVL 962
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQ-VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD +MP+M+G AT+ +R+ E++N + +P++ LTAH D ++ GMD +LGKP +
Sbjct: 963 MDVQMPVMDGLTATQTLRKAERQNNWMRLPVLGLTAHAIQGYQDTCLKHGMDGYLGKPFD 1022
Query: 1120 RDHLMEAIKYL 1130
L++ I +L
Sbjct: 1023 IHQLLKTIGHL 1033
>gi|158333826|ref|YP_001514998.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158304067|gb|ABW25684.1| two-component hybrid sensor and regulator histidine kinase,
putative [Acaryochloris marina MBIC11017]
Length = 653
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 154/324 (47%), Gaps = 45/324 (13%)
Query: 330 ISMLTFVFKSARAARKEMHLCASLIKQ--MEATQQAERKSMNKSLAFANASHDIRAALAG 387
+S F+ ++ A E H A Q + A + AE ++ KS AN SH++R L
Sbjct: 140 VSDFLFLLQAKNTALNEAHKLADERAQKLVAAKEMAESANLAKSTFLANMSHELRTPLNA 199
Query: 388 ITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447
I G +L ++ + L +N LL LLN IL+ SK+EAG++ L +F++
Sbjct: 200 ILGFSQLLSRDSTLTAAHLHKLSIINNSGEHLLALLNDILEMSKIEAGQITLDPTNFNLH 259
Query: 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE 507
LE + +LF K + + S +V ++ ++ D KL+Q+L NLL NA+KFT+E
Sbjct: 260 HFLEGLYNLFQQKVFSKKINLKFQYSK-TVPQY--IQADIKKLRQVLINLLGNAIKFTNE 316
Query: 508 GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEF 567
G + ++ + L + LQ +CL
Sbjct: 317 GQVYLKVASRI-------YLDDAYSVNLQEPTCL-------------------------L 344
Query: 568 TFEVDDTGKGIPKEKRKTVFENYVQVK------EGEGGTGLGLGIVQSLVRLMGGDIEIV 621
TF V+DTG G+ +E ++ +F + Q + +G GTGLGL I + V LMGG++ I
Sbjct: 345 TFSVEDTGPGVSEEDQEKIFHPFYQTEYGKQSHQGVHGTGLGLSISRQFVNLMGGELSIS 404
Query: 622 DKENGERGTCFRFNVFLAIREASA 645
+ N +G F F++ + + ASA
Sbjct: 405 SQLN--KGATFSFSIPVKVSTASA 426
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 23/139 (16%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D R + L +G V++ +NG+ AL++ + PH+ I
Sbjct: 446 RILVVEDHADNRCLLVTLLATIGFLVKSAQNGQEALEICQEW--------HPHL-----I 492
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD +MP+M+G EAT++IR Q+ P IIALTA+ E+ ++ + G D L KP
Sbjct: 493 WMDIKMPLMDGLEATQRIR---AMPQIPQPVIIALTANAFDEDKERALTCGCDDFLHKPC 549
Query: 1119 NRDHLME------AIKYLH 1131
N ++E +KYL+
Sbjct: 550 NETIILEKMTQHLGVKYLY 568
>gi|452852081|ref|YP_007493765.1| putative Sensor histidine kinase response regulator [Desulfovibrio
piezophilus]
gi|451895735|emb|CCH48614.1| putative Sensor histidine kinase response regulator [Desulfovibrio
piezophilus]
Length = 888
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 141/289 (48%), Gaps = 60/289 (20%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITG---LIELCYVEAGPGSELETNLRQMN 413
M A ++ ER + KS AN SH+IR L GI G LIE+ VE G + + L
Sbjct: 501 MFANEELERANQVKSEFLANMSHEIRTPLNGIMGMLQLIEMNGVEKKNGEYIRSALE--- 557
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFH-PVAMRK-GVEVVLD 471
L LL+ I+D ++VEAGK+ L E FD+ ++++ V++LF P+ RK G+E +D
Sbjct: 558 -STQRLNRLLSDIMDLTRVEAGKLGLHPEPFDLHQVVKQVIELFQVPLGQRKVGLETSID 616
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
+ VL GD +L+Q+L+NL+ NA+KFT EG + V + P G P
Sbjct: 617 QNIPQVLV-----GDPARLQQVLNNLVGNALKFTQEGSVRVDVNMLSPLRSGEP------ 665
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
F F V DTG GIP E+ + +FE++
Sbjct: 666 ----------------------------------RFLFSVTDTGIGIPCEQIEPLFESFR 691
Query: 592 QVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
Q +G G GLGL I + LV +MGG + VD E G GT F F++
Sbjct: 692 QASKGYRRQYQGAGLGLSICKHLVSIMGGTL-FVDSEVG-VGTSFHFSL 738
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 17/146 (11%)
Query: 980 TEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR 1039
T ++ED Q + P RG ++L+ +D + A L+HL VE E+G AL +R
Sbjct: 747 TTAQQEDSR--QVRLP-RGIRVLLVEDDRVNSIAASGLLKHLHCIVEIAEDGVVALDALR 803
Query: 1040 SGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHIS 1098
Q+D +D ILMD +MP M+G EAT+ IRE N+ IPI+ALTA+
Sbjct: 804 -----QQD--------FDLILMDIQMPNMDGLEATKAIREGRVGENKKTIPIVALTAYAM 850
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLM 1124
+ +K + AGM+ ++ KP++ + LM
Sbjct: 851 RGDKEKMLLAGMNDYMVKPVSIEALM 876
>gi|407687435|ref|YP_006802608.1| sensor protein [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|407290815|gb|AFT95127.1| putative sensor protein [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 1260
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 139/287 (48%), Gaps = 53/287 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE-LETNLRQMNVC 415
+EATQ+A + S KS +N SH++R L G+ G L ++ P +E E + M +
Sbjct: 501 VEATQEARKASNVKSSFISNISHEMRTPLNGVVG--SLALLKRQPLNEKAEQLVSMMEIS 558
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
N+L L+N +LD SK+EAGK+ + + FD L+E + +F A KG+++++D +
Sbjct: 559 CNNLSVLINDVLDLSKIEAGKLDINNQYFDPLALIESIAKVFAVKAASKGLQLLVDTTG- 617
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
L ++ D ++ QILSNLL+NA+KFT EGHI ++
Sbjct: 618 --LPPVEINSDPYRINQILSNLLNNAIKFTEEGHIKLQ---------------------- 653
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
V+ + D + F V DTG GI +E + +F + Q
Sbjct: 654 -------------------VSLSDDDAGTQQLHFSVCDTGVGIAQENQPKLFTAFTQADA 694
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
V GGTGLGL I + L +LMGG EI + G+ F F V L
Sbjct: 695 SVATQYGGTGLGLSICKQLSQLMGG--EITFNSEVDIGSTFSFFVTL 739
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 13/167 (7%)
Query: 966 TGNSSGEGSSRYKQTEIEEEDG--ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGA 1023
T N S S + K +I + +G + ++ Q + +L+ DD+M+ R VA+ L L
Sbjct: 886 TLNQSDISSGKGKAEDISDGEGAADDTEQQLSIENANLLIVDDNMINREVAKGVLESLPV 945
Query: 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKR 1083
+ C +GE + + + R + + ILMDC+MP MNGY+ATR IR E K
Sbjct: 946 KLFTCSDGEEVVAFLTKCESKGRRIHS--------ILMDCQMPNMNGYDATRAIR-EGKA 996
Query: 1084 NQVH--IPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+H +PIIA+TA+ E +K +EAGMD KP+ D L+ +K
Sbjct: 997 GAMHKDVPIIAMTANAMLGEKEKCLEAGMDDFATKPVMADVLIPKVK 1043
>gi|344204199|ref|YP_004789342.1| multi-sensor hybrid histidine kinase [Muricauda ruestringensis DSM
13258]
gi|343956121|gb|AEM71920.1| multi-sensor hybrid histidine kinase [Muricauda ruestringensis DSM
13258]
Length = 1323
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 144/301 (47%), Gaps = 51/301 (16%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
SL+K+ Q+A+ S +KS AN SH+IR L G+ G +L GS+ E +
Sbjct: 795 SLVKE---KQKAQAASKSKSEFLANMSHEIRTPLNGVIGFTDLLMKTELSGSQKEY-MHT 850
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
+ AN LL ++N +LD SK+EAGK++L E D+ EL + + D+ A KG+E++LD
Sbjct: 851 VYNSANHLLDIINDVLDFSKIEAGKLELSIEKVDLLELCDQIADIIKHQAHAKGLEILLD 910
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
S + ++ V D V+L+QIL+NL+ NAVKFT+EG + ++ K A
Sbjct: 911 VS-ADIDRY--VYADPVRLRQILTNLMGNAVKFTNEGEVELKVRYKSELA---------- 957
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
+D F F + DTG GI + +F +
Sbjct: 958 ----------------------------KDVKKKCFVFSIRDTGVGISEHSLDKIFNAFD 989
Query: 592 Q----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
Q + GGTGLGL I L+ MG +++ K N +G+ F F V + + D
Sbjct: 990 QEDASTTKKFGGTGLGLTISNRLLNFMGSRLKVESKVN--QGSTFSFVVEFETEDETVLD 1047
Query: 648 N 648
N
Sbjct: 1048 N 1048
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 23/147 (15%)
Query: 993 QKPLRGKK-----ILVADDSMMLRRVAEINLRHL---GATVEACENGEAALQLVRSGLND 1044
+KP +G + ILVA+D+ + R +A L+ + VEA + EA +
Sbjct: 1190 EKPTKGLESWEPSILVAEDNPVNRFLARTLLQKIVPKSKIVEAHDGSEAVEYFTQQA--- 1246
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D I MD +MPIM+GY+AT+KIRE E+ + H+PI+ALTA E ++
Sbjct: 1247 -----------FDIIFMDIQMPIMSGYDATKKIREIEEGTKTHVPIVALTARGLKGEKER 1295
Query: 1105 TIEAGMDVHLGKPLNRDHLMEA-IKYL 1130
+E GMD ++ KP+ + L E +K+L
Sbjct: 1296 CLEQGMDDYVTKPVVYETLKEILLKFL 1322
Score = 40.4 bits (93), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA-GMDVHL 1114
+D +++D MP +NG E + +RE+ N +PI+ L + I E K + G+ ++
Sbjct: 1101 FDLMILDYNMPYLNGVEVVQHVREKFNLNADKLPIMLLHSSIEDEAIKKACDTYGVRFNM 1160
Query: 1115 GKPL 1118
KP+
Sbjct: 1161 SKPI 1164
>gi|298493109|ref|YP_003723286.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
gi|298235027|gb|ADI66163.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
Length = 1002
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 145/312 (46%), Gaps = 46/312 (14%)
Query: 335 FVFKSARAARKEMHLCASLIKQM---EATQQAERKSMNKSLAFANASHDIRAALAGITGL 391
F + A+ R + L A Q+ +A +QAE + KS A SH++R L I G
Sbjct: 496 FEIEVAQEMRNSLMLAALEFSQVALQQAAEQAEIANRAKSQFLAKMSHELRTPLNAILGF 555
Query: 392 IELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLE 451
++ + E + NL ++ LL L+N +L+ SK+EAGK L E FD+ L+
Sbjct: 556 TQILTRNSSLSQEDQENLDIISRSGEHLLSLINDVLEMSKIEAGKPTLNETYFDLYRLIY 615
Query: 452 DVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHIS 511
+ ++F A KG+ ++ ++ V V GD KLKQIL NL+ NA+KFT GH++
Sbjct: 616 SIQEMFALKAADKGINLI---TEFGVEVNKYVFGDEGKLKQILINLIGNAIKFTVVGHVA 672
Query: 512 VRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEV 571
+R +SC L N E EV
Sbjct: 673 IR------------------------VSC-----PPNYAPLAVTNGKVLIE------LEV 697
Query: 572 DDTGKGIPKEKRKTVFENYVQVKEGE---GGTGLGLGIVQSLVRLMGGDIEIVDKENGER 628
+DTG GI E ++ +FE ++Q K G GTGLGL I + RLMGGDI + K
Sbjct: 698 EDTGAGIALEDQELIFEAFLQSKGGRQFMQGTGLGLAISRQFARLMGGDITV--KSILGE 755
Query: 629 GTCFRFNVFLAI 640
GT F V L++
Sbjct: 756 GTTFTCRVQLSL 767
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D + R + L +G V A ENG A+ + + PH+ I
Sbjct: 794 RILIVEDILENRLLLVKLLESVGLDVRAVENGLQAIDICQEW--------EPHL-----I 840
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD +MP+MNGYEAT++IR + +I +IALTA E+ ++ G D + KP
Sbjct: 841 WMDIQMPVMNGYEATKQIRAMNQGK--NIIMIALTASAFEEDKQAILQVGCDDIISKPFE 898
Query: 1120 RDHLMEAI-KYL 1130
L E + +YL
Sbjct: 899 EKMLFEKMAQYL 910
>gi|406888085|gb|EKD34675.1| Sensor protein [uncultured bacterium]
Length = 752
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 147/309 (47%), Gaps = 51/309 (16%)
Query: 332 MLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGL 391
++ FV + A K L K E +QAER NKS AN SH+IR + GI GL
Sbjct: 330 LMAFVARHIGDALKRKRAVDELKKAKERAEQAER---NKSTFLANMSHEIRTPMNGIIGL 386
Query: 392 IELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLE 451
++ G + T L ++ A LL L+N ILD SK+EAGK++L F + L
Sbjct: 387 TDIILKSDISGHQ-RTYLEMVHSSAERLLKLINDILDFSKIEAGKLELAIAPFSLRHTLA 445
Query: 452 DVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHIS 511
D V++ A +K + + +D D S+ ++GD KL QIL NL+ N +KFT++G +
Sbjct: 446 DAVEILGVSAAQKAISLSVD-CDESIPDM--LRGDADKLHQILINLVGNGIKFTNQGSV- 501
Query: 512 VRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEV 571
+ ++ C +K K+ E VN F++
Sbjct: 502 -----------------------ILTVRCTGHKTKQQ----EQVN----------LLFQI 524
Query: 572 DDTGKGIPKEKRKTVFENYVQVKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGE 627
DTG GIP ++ VF+ + Q+ GTGLGL I LV +MGG I V+ E G
Sbjct: 525 KDTGIGIPNDEINNVFKAFSQLGTTRDSNLRGTGLGLVIAAELVEMMGGKI-CVESEPG- 582
Query: 628 RGTCFRFNV 636
GT F F+V
Sbjct: 583 VGTTFYFSV 591
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 20/158 (12%)
Query: 975 SRYKQTEIEEED----GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACEN 1030
S +KQ I ED + ++PLR IL+ +D + R +A L G V N
Sbjct: 598 SDHKQATIPLEDPALLCNAANGRQPLR---ILLVEDEYINRVLAVTVLEREGWKVTVAGN 654
Query: 1031 GEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPI 1090
G AL+L+ +D ILMD +MP +NGYEATR IR+ E R H+PI
Sbjct: 655 GVQALELLDKKC-------------FDLILMDIQMPELNGYEATRTIRKNEDRTGRHVPI 701
Query: 1091 IALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
IA+TA+ + +K + GMD ++ KP+ D L I+
Sbjct: 702 IAMTAYAVKGDREKCLAVGMDGYVSKPIRPDQLHAEIE 739
>gi|392553060|ref|ZP_10300197.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
spongiae UST010723-006]
Length = 1422
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 133/275 (48%), Gaps = 52/275 (18%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQMNVCANDLLG 421
AE + K A+ SH+IR + G+ G++EL ++ P ++ +T+ L AN LL
Sbjct: 888 AEAAMVAKDEFLASMSHEIRTPMNGVIGMLEL--MQDSPLNDEQTHRLTIAKNSANSLLN 945
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFS 481
L+N ILD SK+EA K++L + FD+ LL ++V+LF A +K +E++LD + L
Sbjct: 946 LINDILDFSKIEADKLELEQIQFDLHLLLSELVELFATRAEQKQLELILDTVN---LNEH 1002
Query: 482 KVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCL 541
V GD +++QILSNL+ NA+KFT +G I V A + S
Sbjct: 1003 FVIGDPGRIRQILSNLIGNAIKFTHQGEIIVSAALCDDS--------------------- 1041
Query: 542 FYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGE 597
E+ T V DTG GI KEK + VFE + Q
Sbjct: 1042 --------------------EHYWRLTLAVKDTGIGISKEKHQHVFELFSQEDSSTTRNY 1081
Query: 598 GGTGLGLGIVQSLVRLMGGDIEIVDKEN-GERGTC 631
GGTGLGL IV+ L M GDI + N G C
Sbjct: 1082 GGTGLGLAIVKRLCNHMDGDISLTSATNEGSEFVC 1116
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 1002 LVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILM 1061
L+ +D+ + + VA+ L L T + ENG A+ +++ PYD I M
Sbjct: 1299 LLVEDNKVNQMVAKGILSKLKLTCDIAENGLDAVNKLKA-----------QSTPYDVIFM 1347
Query: 1062 DCEMPIMNGYEATRKIREEEKRNQ-VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D +MP M+GY+AT IR+ + Q H IIA+TA+ + +K + AGM+ ++ KP++
Sbjct: 1348 DIQMPEMDGYQATNAIRQNQCGEQHQHTTIIAMTANAMEGDKEKCLAAGMNEYISKPISI 1407
Query: 1121 DHLMEAIKYL 1130
D + + + L
Sbjct: 1408 DDVKDTLHLL 1417
Score = 42.4 bits (98), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
SQ + G ILV DD+ + L++ GA V NG+ AL + L
Sbjct: 1129 SQPNVAISGLNILVVDDNETNCEILAKQLKNWGAKVTTFSNGQEALARCNA-------LK 1181
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEA 1108
A L +D ++D +MP M+G ++++ + NQ+ I +I +T+ +A + E
Sbjct: 1182 ASETL-FDVAILDMQMPKMSGEMLAKELKAD---NQLAAIKLIMMTSMQHKGDAKRFAEI 1237
Query: 1109 GMDVHLGKPLNRDHLMEAIKYL 1130
G D + KP L A++ +
Sbjct: 1238 GFDGYFPKPATSADLRAALQII 1259
>gi|186685125|ref|YP_001868321.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186467577|gb|ACC83378.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1870
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 134/288 (46%), Gaps = 31/288 (10%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A + AE + KS AN SH++R L I G +L + S +L +N
Sbjct: 1359 AKEAAETANQAKSAFLANMSHELRTPLNAILGFSQLMERDTSLNSNQRESLATINRSGEH 1418
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N +L+ SK+EAG++ EDFD+ LL+ + ++F A K + L
Sbjct: 1419 LLNLINDVLEMSKIEAGQIIFTPEDFDLYLLLQTLQEMFQVKAQTKQL----------FL 1468
Query: 479 KFS-------KVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
KF ++ D KL+Q+L NLL NAVKFT G +++R + G +
Sbjct: 1469 KFEIAPNLPRYIQTDEGKLRQVLINLLGNAVKFTQTGGVTLRVRLGSEQGAG----ETGE 1524
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
L C N NA FEV+DTG+GI E+ +F+ +V
Sbjct: 1525 EELLSPAQC-----PMPNAPCPIPNPQSPIPNARFLHFEVEDTGRGIAPEEMNNLFQPFV 1579
Query: 592 QVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
Q G + GTGLGL I + VRL+GGDI + +G+ F F++
Sbjct: 1580 QTTSGIQTKEGTGLGLTISRQFVRLLGGDIYLTS--TPRQGSTFSFDI 1625
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 16/135 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD R + L +G +EA NG+ A+ + ++ PH+ I
Sbjct: 1655 RILVVDDRKENRDLIVQLLGSIGFEIEAANNGQDAIAMWQTW--------QPHL-----I 1701
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVH--IPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
MD MP+MNGY+AT++IR E+ + IIALTA E+ + AG + + KP
Sbjct: 1702 WMDMRMPVMNGYDATKEIRIRERNTNTNHRTVIIALTASAFEEQQASILAAGCNDLVRKP 1761
Query: 1118 LNRDHLMEAI-KYLH 1131
+ E I +YL
Sbjct: 1762 FREQVIFEKIAEYLQ 1776
>gi|71905874|ref|YP_283461.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase A, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71845495|gb|AAZ44991.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal
[Dechloromonas aromatica RCB]
Length = 738
Score = 123 bits (309), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 123/259 (47%), Gaps = 48/259 (18%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
AE ++ KS A SH+IR + GI G+ +L + E +R + LL L
Sbjct: 344 AEAANLAKSSFLATMSHEIRTPMNGILGMAQLLLMSGSAEDERHEYVRTILNSGQTLLSL 403
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
LN ILD SKVEAGK++L F ++E+VV LF A KG+ + +V ++
Sbjct: 404 LNDILDISKVEAGKLELKPAVFAPQGVIEEVVGLFFAQAEAKGLSITAQWHGPAVQRY-- 461
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLF 542
+ D+++L+QIL+NLLSNAVKFT EG I + A
Sbjct: 462 -RADQIRLRQILTNLLSNAVKFTKEGAIRIEA---------------------------- 492
Query: 543 YKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----G 598
+R++ F V D+G GI EKR +F+ + Q+ G
Sbjct: 493 -------------REIEREDGWARLEFAVIDSGIGIAPEKRALLFKPFSQLDSSATRQYG 539
Query: 599 GTGLGLGIVQSLVRLMGGD 617
GTGLGL IV+SL LMGG+
Sbjct: 540 GTGLGLSIVRSLAELMGGE 558
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
+P +LV +D+ R+V E LR L ++ +NG AA+ + G+
Sbjct: 600 EPAISGHVLVVEDNPTNRKVIEAMLRKLHIRSDSVDNGRAAVDTLEQGMRP--------- 650
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDV 1112
D +LMD +MP+M+G +AT IR+ E + +PI+ALTA E+ + AGMD
Sbjct: 651 ---DLVLMDVQMPVMDGIQATMLIRQREAETGLPRLPIVALTAGAFDEDRQHCLVAGMDD 707
Query: 1113 HLGKPLNRDHL 1123
+ KP+N + L
Sbjct: 708 FMSKPVNLNDL 718
>gi|386848326|ref|YP_006266339.1| sensory box histidine kinase/response regulator [Actinoplanes sp.
SE50/110]
gi|359835830|gb|AEV84271.1| sensory box histidine kinase/response regulator [Actinoplanes sp.
SE50/110]
Length = 1418
Score = 123 bits (309), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 133/278 (47%), Gaps = 55/278 (19%)
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSI 426
S KS AN SH+IR + G+ GL L + + L + A+ LL ++N I
Sbjct: 776 SRMKSEFVANMSHEIRTPMNGVIGLTSLLLDTDLDARQRD-YLTTVQNSADALLNVINDI 834
Query: 427 LDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPSDGSVLKFSKVK 484
LD SK+EAGK+ + DFD ++EDVV L A KG+E+ V+ P+ L
Sbjct: 835 LDFSKIEAGKLDIDPVDFDPRAVVEDVVSLLAATAQAKGLEIAAVITPAIPPAL-----N 889
Query: 485 GDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYK 544
GD +++QIL+NL+SNAVKFT+ G + V + +P
Sbjct: 890 GDAHRIRQILTNLVSNAVKFTAHGEVVVTVEIGEP------------------------- 924
Query: 545 NKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGT 600
RD E TF V DTG GIP +++ +FE + Q GGT
Sbjct: 925 ---------------RD-GVREVTFAVTDTGIGIPADRQAHLFEAFTQADASTTRRYGGT 968
Query: 601 GLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GLGL I + LV LMGG I + D E G RG+ F F + L
Sbjct: 969 GLGLTISRQLVGLMGGSIGL-DSEPG-RGSRFHFTLPL 1004
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 17/140 (12%)
Query: 988 ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
+ S A++P +L+A+D+ + + V L LG T + +GE A++++++
Sbjct: 1156 QTSIAERPGSTAHVLIAEDNEVNQEVTREMLAALGYTCDIAADGEQAVRMLQTR------ 1209
Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTI 1106
H YD +LMDC+MP+++GY+AT IR RN V P+IALTA + + +
Sbjct: 1210 ----H---YDAVLMDCQMPVLDGYQATEVIRRLPAPRNAV--PVIALTASVLASDQQRCR 1260
Query: 1107 EAGMDVHLGKPLNRDHLMEA 1126
AGMD L KPL R H ++A
Sbjct: 1261 SAGMDDVLTKPL-RKHDLQA 1279
>gi|302795646|ref|XP_002979586.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii]
gi|300152834|gb|EFJ19475.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii]
Length = 862
Score = 123 bits (309), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 124/447 (27%), Positives = 206/447 (46%), Gaps = 30/447 (6%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
AE+ S KS AN SH+IR + GI G+ L + G E N+ + CA+ LL L
Sbjct: 390 AEQASQAKSDFLANMSHEIRTPIHGILGMSALV-LATGLTEEQRDNMTTVKDCADMLLHL 448
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N ILD +K+EAG+ ++ F++ +++ + + P A K + + D D V +
Sbjct: 449 INGILDVAKIEAGRFEVELVSFNLCHVIKSTLHILEPRAREKRLWLKWD-VDARVP--TV 505
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG-NPSL---SSSRHGFLQSI 538
+ GD KL+ L NL+ NA+KFT +G++ V P G PS+ S+ R L
Sbjct: 506 LVGDSGKLRHCLLNLVGNALKFTHQGYVQVTVA---PYVDGLYPSVDPESTDRVMALTER 562
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
+F + + V+ D M+ F V D+G G+ ++K +F+ + Q +
Sbjct: 563 KFVFVPHCTVKNQPRTVS----DGAQMKLVFRVSDSGIGVSRDKLSNIFKPFTQADPSIS 618
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
GGTGLGL IVQ V LMGG I V+ E G G+ F + + E + + + E
Sbjct: 619 RLYGGTGLGLCIVQRFVELMGGQI-CVESEYGT-GSTFCILLPFYLIEGTRVEETSNYEA 676
Query: 655 ELAGGDSAAGDTQ-LQHMNLTVKAPSPSLSIRTNSP--RLNILSPGSRHEGSHVVLLIAN 711
A +SA +++ + N + PSP+ T P +P V+L+ N
Sbjct: 677 PEAPSESAVDESKVMASPNEELIIPSPTTPKPTIKPAKTSPTTTPPLSPTRKRVLLVEDN 736
Query: 712 EERRRIAQKFMENLGINVSAVS----RWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSR 767
+++A + ++ G V VS E L S K I P ++ R
Sbjct: 737 LVNQKVASRLLQKYGHVVITVSDGLEAVEALKSDHKAYDLVLMDIQMPGMDGLEATRRIR 796
Query: 768 SDSESASFKEVPLSAMEGTEHKLQGYK 794
D + ++++P+ + T + ++GY+
Sbjct: 797 KDELGSGWQKIPIIGL--TANAMKGYQ 821
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 12/131 (9%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K++L+ +D+++ ++VA L+ G V +G A++ ++S D + YD
Sbjct: 728 KRVLLVEDNLVNQKVASRLLQKYGHVVITVSDGLEAVEALKS---DHK--------AYDL 776
Query: 1059 ILMDCEMPIMNGYEATRKIREEE-KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+LMD +MP M+G EATR+IR++E IPII LTA+ D EAGMD +L KP
Sbjct: 777 VLMDIQMPGMDGLEATRRIRKDELGSGWQKIPIIGLTANAMKGYQDICYEAGMDGYLPKP 836
Query: 1118 LNRDHLMEAIK 1128
+ ++ I+
Sbjct: 837 FDIKQVLSTIR 847
>gi|392374328|ref|YP_003206161.1| Histidine kinase [Candidatus Methylomirabilis oxyfera]
gi|258592021|emb|CBE68326.1| putative Histidine kinase [Candidatus Methylomirabilis oxyfera]
Length = 528
Score = 123 bits (309), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 136/283 (48%), Gaps = 33/283 (11%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELC---YVEAGPGSELETNLRQMN 413
+EA QQAE S +KSL +N SH++R L I G L V + P EL+ +R ++
Sbjct: 256 LEAKQQAEEASRHKSLFLSNMSHELRTPLNSIIGFASLLQDPIVSSLPEKELQL-MRHIS 314
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
LL L+N +LD SKVEAGK+ L + F +GE +E V F P A +K ++ L
Sbjct: 315 TSGEHLLALINDLLDISKVEAGKLILQPQAFPLGEAIEAAVYTFRPQAAQKQQDLGLSMD 374
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+K D ++ KQIL NLLSNAVKFT G ++ + +G+ S+
Sbjct: 375 H----DMPIIKADPIRFKQILYNLLSNAVKFTPVGG-RIKVAARIAPGVGHQKAGSNDVD 429
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
L I C Y E V A V DTG GI E +F+ + Q+
Sbjct: 430 PLHPIPCTQYPG-------ECVEIA------------VSDTGIGIRCEDLSKLFQLFTQL 470
Query: 594 K----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
+ + GTGLGL + + LV L GG I + G RG+ F
Sbjct: 471 EPTLTKQFQGTGLGLALTKQLVELHGGTIGAASEGPG-RGSTF 512
>gi|400752984|ref|YP_006561352.1| signal transduction histidine kinase [Phaeobacter gallaeciensis
2.10]
gi|398652137|gb|AFO86107.1| signal transduction histidine kinase [Phaeobacter gallaeciensis
2.10]
Length = 764
Score = 123 bits (309), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 136/281 (48%), Gaps = 50/281 (17%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH+IR + G+ G+ EL + E + + LL ++N +LD
Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLS-DTNLSDEQQLYANTIKNSGEALLVIINDVLDY 274
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EA K++L E FD+ + +V+ L P A KG+ ++L D + + GD +
Sbjct: 275 SKIEAQKLELHPEPFDLERSVHEVLMLLQPTARDKGLTLLL---DYDLFLPTSFVGDPGR 331
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
++Q+L+NL+ NAVKFTSEGH++
Sbjct: 332 IRQVLTNLVGNAVKFTSEGHVA-------------------------------------- 353
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG----GTGLGLG 605
L+ + D+ ++DTG GIP+EK + +F + QV++ GTGLGL
Sbjct: 354 --LQITGISNADDKICSIHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGTGLGLA 411
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
I + L+ LMGG+I + +E +G+CF F + L + E ++
Sbjct: 412 ISKRLIELMGGEIWVESQEG--KGSCFGFRMELPLAEGAST 450
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R ++L A+D+ + V ++ L ++ NG A++ +S
Sbjct: 625 RLMRVLAAEDNRTNQLVFRKMVKDLNIDLQFVSNGIEAVEAYQS-------------FQP 671
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D I MD MP+M+G EATRKIR E ++ P++ALTAH ++D + AG+D +L K
Sbjct: 672 DLIFMDISMPVMDGKEATRKIRALEHGTGIYTPVVALTAHAMAGDSDGILAAGLDHYLTK 731
Query: 1117 PLNRDHLMEAI 1127
PL + + E I
Sbjct: 732 PLRKALIHERI 742
Score = 40.4 bits (93), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 18/126 (14%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+I V D ++R V L LG V +NG AA+ +G+ D DL +
Sbjct: 461 QIAVIDSQSVMRDVLSKQLAMLGLEVTVFDNGAAAI----AGMPDGVDL----------V 506
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+ D ++P NG E +K+R +PI+ L++ + ++ +++ D L KP+
Sbjct: 507 VCDEQLPDQNGVELAQKLRSGPF---AQVPILMLSSDPTA-PSNSDVQSVTDSVLLKPIQ 562
Query: 1120 RDHLME 1125
RD L +
Sbjct: 563 RDELFQ 568
>gi|345873354|ref|ZP_08825267.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343917313|gb|EGV28118.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1362
Score = 123 bits (309), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 138/304 (45%), Gaps = 57/304 (18%)
Query: 340 ARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEA 399
AR + + + A L ++ +AE KS AN SH+IR + I GL L +
Sbjct: 729 ARDIKPQRDMAAELERR---AHEAESAVRAKSAFLANMSHEIRTPMNAILGLTHLLRRDL 785
Query: 400 GPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHP 459
+ + L ++++ A LL ++N ILD SK+EAGK++L E DF +G LL+ V L
Sbjct: 786 ANATNI-ARLEKIDIAARHLLTIINDILDLSKIEAGKLKLDEGDFALGALLDQVRSLVIE 844
Query: 460 VAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
A KG++V ++ S+ ++GD +L Q L N SNAVKFT G + +RA V
Sbjct: 845 SAEAKGLDVSIEIDQPSLW----LRGDVTRLLQALLNYASNAVKFTEHGGVVLRARVLAD 900
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
A G M FEV DTG GIP
Sbjct: 901 DADG-----------------------------------------MRLRFEVQDTGVGIP 919
Query: 580 KEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGE-RGTCFRF 634
++K +F + Q GGTGLGL I L RLM G+ + E GE G+ F F
Sbjct: 920 RDKVSRLFHAFEQADSSTTRRYGGTGLGLAITHELARLMDGEAGV---ETGEGTGSVFWF 976
Query: 635 NVFL 638
V L
Sbjct: 977 TVRL 980
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 34/179 (18%)
Query: 965 KTGNSSGEGSSRYKQTEIEEEDGER---------SQAQKPLR----GKKILVADDSMMLR 1011
+ G +GEG+ + GER + A+ LR G ++L+A+D+ +
Sbjct: 961 EAGVETGEGTGSVFWFTVRLRRGERGAPVGHDRWASAEADLRSIHAGARLLLAEDNPINC 1020
Query: 1012 RVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGY 1071
V LR +G VE NG+ A ++ G Y +LMD +MP+M+G
Sbjct: 1021 EVLLDLLRSVGLVVETAANGQEAFEMAAEG-------------DYALVLMDVQMPVMDGL 1067
Query: 1072 EATRKIR---EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ATR IR KR PI+A+TA+ ++ ++AGM+ + KP++ L A+
Sbjct: 1068 QATRAIRGLPGWSKR-----PILAVTANAFDDDRHACLDAGMNDFVAKPVDPHDLFRAL 1121
>gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae]
Length = 1268
Score = 123 bits (309), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 154/331 (46%), Gaps = 66/331 (19%)
Query: 327 GVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALA 386
G L L F + + E+ L +A +QAE + KS AN SH+IR +
Sbjct: 501 GQLAGFLGIAFDLTKQLKYEVELA-------QAKEQAESANKAKSEFLANMSHEIRTPMN 553
Query: 387 GITGLIELCYVEAGPGSELETN----LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEE 442
G+ GL++L S L+ + + A LL LLN ILD SK+EAGK++L
Sbjct: 554 GVLGLLQLV-----ANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPH 608
Query: 443 DFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAV 502
F + +LL+D+ +F A +KG+EV+ D + + GD ++KQ+L NL+ NA+
Sbjct: 609 PFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTADVP---EHLLGDSFRIKQVLINLVGNAI 665
Query: 503 KFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562
KFT +G I + +I + SL E
Sbjct: 666 KFTDKGEILI--------SIRSQSLP---------------------------------E 684
Query: 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDI 618
+ +F + DTG GI E++ +F + Q + GGTGLGL I + LV LMGG+I
Sbjct: 685 GEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEI 744
Query: 619 EIVDKENGERGTCFRFNVFLAIREASANDNN 649
V+ E G G+ F FNV + E A N+
Sbjct: 745 G-VESEFG-CGSTFSFNVVVRNAEKRAIQNS 773
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 13/137 (9%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
PL+G +L+ +D++ + VA L+ LGAT++ +GE AL+++ S A H
Sbjct: 925 PLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEMLES--------TAEH-- 974
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
+D +LMD +MP M+GY+ TR+IR + R+Q+ +PIIA+TAH ++ + AGM H+
Sbjct: 975 -FDMVLMDIQMPGMDGYQTTREIR-KLPRHQL-LPIIAITAHAMSDDIAACLAAGMQDHI 1031
Query: 1115 GKPLNRDHLMEAIKYLH 1131
KP + + L I H
Sbjct: 1032 AKPFDLNELTTKILSHH 1048
>gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
Length = 1267
Score = 123 bits (309), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 153/305 (50%), Gaps = 49/305 (16%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA ++AE + KS AN SH+IR + GI G L ++ S+ L ++ +
Sbjct: 499 EAKEEAEYSARVKSEFLANMSHEIRTPMNGIIGFCHLL-MQTQLNSKQLNYLTKIRSQSQ 557
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLG++N ILD SK+EAGKM + DF++ E++ D+ L A +KG+E++ + G
Sbjct: 558 HLLGIINDILDFSKLEAGKMSVEHVDFNLEEVIADLFYLLENQASQKGLELLANVQKGVP 617
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ +KGD ++LKQ+L NL +NA+KF+ +G+I +R
Sbjct: 618 ---AHLKGDPLRLKQVLVNLANNAIKFSDQGNIFLR------------------------ 650
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+E ++ + D + + +F V+D G G+ +E+ + +F ++ Q
Sbjct: 651 --------------VEKIDQSDSDSDQVIISFSVEDNGIGLTEEQMQRLFNSFSQADSST 696
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGE 653
GGTGLGL I + LV LMGG+I V E G G+ F F++ I AS N +
Sbjct: 697 TRKYGGTGLGLAISKYLVELMGGEIS-VSSEYG-VGSTFSFSLPFGIL-ASGIQTNQRDN 753
Query: 654 KELAG 658
+L G
Sbjct: 754 IDLKG 758
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 19/147 (12%)
Query: 972 EGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENG 1031
E S Y+ +++E S L G IL+ +D+++ + VA L +G +V+ ENG
Sbjct: 881 ESDSYYRPQDLKE----NSLFTGKLEGNHILLVEDNLINQMVAVEILESVGISVDVAENG 936
Query: 1032 EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPII 1091
A++ VR+G YD +LMD +MP+M+G EATR +R+E +PII
Sbjct: 937 REAVEKVRAG-------------NYDLVLMDLQMPVMDGMEATRILRDEPLYRD--LPII 981
Query: 1092 ALTAHISGEEADKTIEAGMDVHLGKPL 1118
ALTAH ++ I GM+ + KP
Sbjct: 982 ALTAHAISGFREQCIGLGMNDFISKPF 1008
Score = 47.4 bits (111), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL-VRSGLNDQRDLGAPHIL 1054
L+G ++L+ DD+ + + L L V +G+ A+ L V+ G
Sbjct: 756 LKGSRVLIVDDNEASQEILASYLVDLNFDVTVLSSGQEAIDLLVKEGE------------ 803
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
+D +++D +MP ++G E R I+E+ K ++ I I+A +A+ E + E G+ L
Sbjct: 804 AFDILVIDWKMPGLDGVETIRLIKEKMKLEKIPIIIMA-SAYDLDELRNVFSELGIKAFL 862
Query: 1115 GKPLNRDHLMEAI 1127
KP LM+AI
Sbjct: 863 NKPHTPSQLMDAI 875
>gi|451979852|ref|ZP_21928261.1| putative Histidine kinase [Nitrospina gracilis 3/211]
gi|451762944|emb|CCQ89469.1| putative Histidine kinase [Nitrospina gracilis 3/211]
Length = 905
Score = 123 bits (309), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 131/261 (50%), Gaps = 49/261 (18%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLG 421
+AE + KS+ +N SH+IR + I G +++ + ++ + + + N LLG
Sbjct: 438 RAEEANQAKSMFISNMSHEIRTPMNAILGYVQILERDDTLSTDQKKRVDGIQKAGNHLLG 497
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFS 481
L+N ILD SK+EAGKM+L F + L+ D+ +FH R + + +D + ++
Sbjct: 498 LINDILDFSKIEAGKMELNVAQFSLSGLIGDLQVIFHNRCERNHLTLKVDYNFSGQRRW- 556
Query: 482 KVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCL 541
V+GD+ KL+QIL NLL NAVKFT +G + R
Sbjct: 557 -VEGDQGKLRQILINLLENAVKFTDQGKVFFRVT-------------------------- 589
Query: 542 FYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--GG 599
+E ++ FEV DTG GIP EK++ VF+ ++Q + G+ GG
Sbjct: 590 -------------------EEKKDQYLFEVVDTGCGIPLEKQEAVFDYFIQNQNGQEKGG 630
Query: 600 TGLGLGIVQSLVRLMGGDIEI 620
TGLGL I + V LMGG++++
Sbjct: 631 TGLGLSISRRQVELMGGELKL 651
>gi|428319304|ref|YP_007117186.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428242984|gb|AFZ08770.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 2163
Score = 123 bits (309), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 159/340 (46%), Gaps = 38/340 (11%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
+ + + + SML ++ A RK L K EA + A R KS AN SH++
Sbjct: 1598 VQLAIAIQQSMLFEQAQTEIADRKLAEAALQLAK--EAAESANRA---KSDFLANMSHEL 1652
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE 441
R L GI G I+L + ++ + +L +N C N LL L+N +LD SK+EA KM L
Sbjct: 1653 RTPLNGILGYIQLLKADKNFTADQQESLNNINQCGNHLLMLINDVLDLSKIEASKMDLSL 1712
Query: 442 EDFDVGELLEDVVDLFHPVAMRKGV----EVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
+ + ++ ++DLF + +KG+ E V DG + D +L+Q+L NL
Sbjct: 1713 TNVNFSSFVKSIIDLFQMRSAQKGIAFNYEQVSALPDG-------ILADEKRLRQVLINL 1765
Query: 498 LSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYK------------- 544
LSNAVKFT+ G ++ + + A +P + I+
Sbjct: 1766 LSNAVKFTNSGSVTFKVGYAENFADNSPQTNCENSSLTAEIATQTLNLTANLDAPLLSLP 1825
Query: 545 ---NKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG--- 598
+AR + A N R + F+++DTG GI + K + +F + QV +
Sbjct: 1826 PLGTTEAREVITAANTCDRPPTP-KIRFQIEDTGIGIGQNKLEEIFLPFHQVGDHNNFVE 1884
Query: 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GTGLGL I Q LV++MG I + + +G+ F ++ L
Sbjct: 1885 GTGLGLSISQKLVKMMGSQIRV--QSTSGKGSIFWVDLDL 1922
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 17/122 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+K+L+ DD + R + L HLG + +GE L A LP D
Sbjct: 1948 RKVLIVDDHEVNRAMLHRLLFHLGFEIAEATDGEDCLH------------KAQEFLP-DI 1994
Query: 1059 ILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
ILMD MP+MNG+EATR++R+ E ++ V I+AL+A++ ++I AG D L KP
Sbjct: 1995 ILMDLLMPVMNGWEATRRLRQLPELKDTV---ILALSANVYETTKQESILAGCDNFLTKP 2051
Query: 1118 LN 1119
+
Sbjct: 2052 IQ 2053
>gi|444376474|ref|ZP_21175718.1| BarA sensory histidine kinase [Enterovibrio sp. AK16]
gi|443679452|gb|ELT86108.1| BarA sensory histidine kinase [Enterovibrio sp. AK16]
Length = 914
Score = 123 bits (309), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 141/286 (49%), Gaps = 55/286 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A + A+ + KS AN SH++R L G+ G ++ S + L+ + AN+
Sbjct: 276 AKKNAQEAARVKSEFLANMSHELRTPLNGVIGFTR-QMLKTHLSSSQQDYLQTIEKSANN 334
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL--DPSDGS 476
LL ++N ILD SK+EAGK+ L FD + LE+V+ L P+A KG+E+ L DP
Sbjct: 335 LLTIINDILDFSKLEAGKLLLENIPFDFEDSLEEVMRLLAPMAHEKGLELNLRIDPRIP- 393
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++++Q+L+NL+ NA KFT GHISV +K+
Sbjct: 394 ----AGVIGDPLRIQQVLTNLIGNATKFTERGHISVSVELKQ------------------ 431
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
QRDE +E F + DTG GI + ++ +F+ + Q
Sbjct: 432 ----------------------QRDER-LELQFVIRDTGIGISERQQSQLFQAFRQADAS 468
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ GGTGLGL I Q LV+ MGGDI + + +G+ F F + L
Sbjct: 469 ISRRYGGTGLGLVITQKLVQQMGGDIGFSSRLH--QGSTFWFTMSL 512
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D ILMD +MP M+G A ++IR+ NQ H P++A+TAH E ++ + GMD +L
Sbjct: 706 FDLILMDIQMPEMDGVTACQEIRKT-PLNQ-HTPVVAVTAHAMTGERERLLNEGMDDYLT 763
Query: 1116 KPLNRDHLMEAIKY 1129
KP+ +H++E + +
Sbjct: 764 KPIE-EHILEQVLH 776
>gi|423206478|ref|ZP_17193034.1| PAS domain S-box protein [Aeromonas veronii AMC34]
gi|404622030|gb|EKB18895.1| PAS domain S-box protein [Aeromonas veronii AMC34]
Length = 1340
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 149/302 (49%), Gaps = 55/302 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA + AE + KS AN SH+IR + I G+ L ++ E + +++ A
Sbjct: 601 LEARRIAEDATRTKSEFLANMSHEIRTPMNAIIGMAHLA-LQTSLSPEQHNYVSKIDRAA 659
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
N+LLG+LN ILD SK+EAGK+QL + DF + E+ E + DL A KG+ ++ D + G
Sbjct: 660 NNLLGILNDILDFSKMEAGKLQLEQVDFRLNEVFEWLADLTAFRAREKGLALLFDLA-GD 718
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ +++GD ++L QIL NL SNA+KFT +G + VR
Sbjct: 719 LP--DRLRGDPLRLGQILLNLTSNAIKFTEQGEVIVRL---------------------- 754
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
AR D ++ A+ V D+G G+ E+ + +F ++ Q
Sbjct: 755 -----------ARSD--------ENDGAIWLQGCVQDSGIGMTAEQCQRLFHSFEQADSS 795
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GGTGLGL I +LV+LM G+I + + +G+ F F + LAI D + Q
Sbjct: 796 TTRKYGGTGLGLAITNNLVQLMDGEIRV--ESTPGQGSGFHFRIRLAI----VADQDKQQ 849
Query: 653 EK 654
E+
Sbjct: 850 EQ 851
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 14/134 (10%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G ++L+ DD+ M R VA L T+ +G AL L+ +D G
Sbjct: 1004 LAGARLLLVDDNDMNREVALALLGKEQITLVCACDGAQALSLL------AQDRG------ 1051
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D ILMDC+MP+M+GY ATR IR + + IPIIA+TA + +K + AGM+ H+
Sbjct: 1052 FDGILMDCQMPVMDGYTATRLIRADPALS--GIPIIAMTASTMATDKEKALAAGMNAHIA 1109
Query: 1116 KPLNRDHLMEAIKY 1129
KPLN L+ + +
Sbjct: 1110 KPLNMSLLLATLSH 1123
>gi|258563456|ref|XP_002582473.1| hypothetical protein UREG_07246 [Uncinocarpus reesii 1704]
gi|237907980|gb|EEP82381.1| hypothetical protein UREG_07246 [Uncinocarpus reesii 1704]
Length = 1829
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 169/357 (47%), Gaps = 71/357 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----NV 414
A QQ R+ +K+ F N SH+IR L GI G I ++L+++ R+M
Sbjct: 1159 AMQQLNREMESKTKFFTNMSHEIRTPLNGILGTIPFIL-----DTQLDSDQRRMLDTIQN 1213
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDP 472
+ +L L+++ILD SKVEAGKM ++++ F V LED +D A+ KG+E+ V +P
Sbjct: 1214 SSTNLRELVDNILDVSKVEAGKMNILKQWFHVRSTLEDAIDTIASRAIDKGLELNYVFEP 1273
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
S+ V GDR +++QIL NL+ NA+KFT++G I +R
Sbjct: 1274 DVPSM-----VFGDRFRIRQILINLIGNAIKFTAQGEIFIR------------------- 1309
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
C Y + + LE + + FEV DTGKG + + + + Q
Sbjct: 1310 -------CSIYHDPDRK--LEGSD--------LFLNFEVIDTGKGFSVRDAQLLMQRFSQ 1352
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
++ + G+GLGL + + + + GG + E RG F F V ++ A+ +N
Sbjct: 1353 IENKDAPQHAGSGLGLFLSKQIAEMHGGRLTPTSMEG--RGAKFSFYVKVSSASATLPEN 1410
Query: 649 NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHV 705
E++L T+L + V++P S T S LSPGS + GS++
Sbjct: 1411 VESSERKLP--------TRLVSETI-VESPVASQPSSTQSE----LSPGSANSGSYI 1454
Score = 67.0 bits (162), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G ++L+ +D R V L + E NG+ + +V S ++ G Y
Sbjct: 1690 KGHRVLLVEDDETNRAVMLKYLEKVKLMSETAANGQECIDMVFS-----KEPGY-----Y 1739
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLG 1115
I+ D +MPIMNGYE R+IR E ++ IPI+AL+A+ ++ D ++AG + ++
Sbjct: 1740 SLIICDIQMPIMNGYETCREIRSWEAKHHFPQIPIMALSANAMTDQIDNAVQAGFNDYVT 1799
Query: 1116 KPLNRDHL 1123
KP+ + L
Sbjct: 1800 KPIKHNEL 1807
>gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1]
Length = 1268
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 154/331 (46%), Gaps = 66/331 (19%)
Query: 327 GVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALA 386
G L L F + + E+ L +A +QAE + KS AN SH+IR +
Sbjct: 501 GQLAGFLGIAFDLTKQLKYEVELA-------QAKEQAESANKAKSEFLANMSHEIRTPMN 553
Query: 387 GITGLIELCYVEAGPGSELETN----LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEE 442
G+ GL++L S L+ + + A LL LLN ILD SK+EAGK++L
Sbjct: 554 GVLGLLQLV-----ANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPH 608
Query: 443 DFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAV 502
F + +LL+D+ +F A +KG+EV+ D + + GD ++KQ+L NL+ NA+
Sbjct: 609 PFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTADVP---EHLLGDSFRIKQVLINLVGNAI 665
Query: 503 KFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562
KFT +G I + +I + SL E
Sbjct: 666 KFTDKGEILI--------SIRSQSLP---------------------------------E 684
Query: 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDI 618
+ +F + DTG GI E++ +F + Q + GGTGLGL I + LV LMGG+I
Sbjct: 685 GEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEI 744
Query: 619 EIVDKENGERGTCFRFNVFLAIREASANDNN 649
V+ E G G+ F FNV + E A N+
Sbjct: 745 G-VESEFG-CGSTFSFNVVVRNAEKRAIQNS 773
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 13/137 (9%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
PL+G +L+ +D++ + VA L+ LGAT++ +GE AL+++ S A H
Sbjct: 925 PLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEMLES--------TAEH-- 974
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
+D +LMD +MP M+GY+ TR+IR + R+Q+ +PIIA+TAH ++ + AGM H+
Sbjct: 975 -FDMVLMDIQMPGMDGYQTTREIR-KLPRHQL-LPIIAITAHAMSDDIAACLAAGMQDHI 1031
Query: 1115 GKPLNRDHLMEAIKYLH 1131
KP + + L I H
Sbjct: 1032 AKPFDLNELTTKILSHH 1048
>gi|428218474|ref|YP_007102939.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427990256|gb|AFY70511.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 1307
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 142/289 (49%), Gaps = 34/289 (11%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLRQMNV 414
+A + AE + KS AN SH++R L GI G ++ G + + L +
Sbjct: 785 QAKEAAESANHAKSEFLANMSHELRTPLNGILGYAQILRRNRFREGDSQQFQQGLETIQQ 844
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
C + LL L+N +LD SK+EA KM+L +F L ++ ++F A +K + +P+
Sbjct: 845 CGDHLLTLINDVLDLSKIEAKKMELRHAEFHFAHFLANIAEIFRLKAAQKDIAFTFEPAA 904
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVR-ACVKKPSAIGNPSLSSSRHG 533
L GD KL+Q+L NL+SNAVKFT G + +R + V++ P LS
Sbjct: 905 DLPLCLI---GDEQKLRQVLINLISNAVKFTDRGGVVMRVSVVEQLDPPEQPELSD---- 957
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
R EA Q +++ F+++DTGKGI ++ +F + Q
Sbjct: 958 ---------------RPAPEAPTKPQ----SVKLRFQIEDTGKGIATDQLTEIFLPFQQA 998
Query: 594 KEGE--GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
+ + GTGLGL I + LV +MG ++ +V+ + G G+ F F V L +
Sbjct: 999 EHSKFTEGTGLGLAISKKLVAMMGAEL-MVESQVG-VGSTFWFEVNLGV 1045
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R +K+LV DD + R V L +G V +NG + LQ Q P
Sbjct: 1070 RERKVLVVDDHLENRMVLSSLLTSMGFAVIEADNGISCLQ--------QAQTCQP----- 1116
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D I MD MP+M+G EA R++R+ E QV PI+ +A + + AG + K
Sbjct: 1117 DIIFMDIVMPVMDGIEAIRRLRQLESWQQV--PIVVTSASAFDHDQQASQSAGSSDFISK 1174
Query: 1117 PLNRDHLMEAIK 1128
P+ L+ ++
Sbjct: 1175 PIVMTELINCLQ 1186
>gi|448240549|ref|YP_007404602.1| hybrid sensory histidine kinase [Serratia marcescens WW4]
gi|445210913|gb|AGE16583.1| hybrid sensory histidine kinase [Serratia marcescens WW4]
Length = 908
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 51/288 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++A+ + KS AN SH++R L G+ G ++ + L+ + AN+
Sbjct: 281 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR-QMLKTDLSATQTDYLQTIERSANN 339
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N +LD SK+EAGK+ L F + E L++VV L P A KG+E+ LD +
Sbjct: 340 LLTIINDVLDFSKLEAGKLVLEHIPFALRETLDEVVVLLAPSAHDKGLELTLDVHNDVP- 398
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+V GD ++L+QI++NLL NA+KFT G+I +R ++K
Sbjct: 399 --EQVIGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRK-------------------- 436
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
Q D +E ++ DTG GI + ++ +F+ + Q +
Sbjct: 437 --------------------QLDRR-VEVEVQIHDTGIGISERQQSQLFQAFRQADASIS 475
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GGTGLGL I Q LV+ MGGDI + N RG+ F F++ L + E
Sbjct: 476 RRHGGTGLGLVITQKLVKEMGGDICFHSQLN--RGSTFWFHITLDLNE 521
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 1021 LGATVEA---CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077
LG VE CE+GE AL L R+ + D ILMD +MP M+G A+ I
Sbjct: 683 LGEQVEKTLLCESGEEALALARNNV-------------LDLILMDIQMPKMDGIHASELI 729
Query: 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH 1131
R+ N PI+A+TAH + E + ++AGMD +L KP++ L + H
Sbjct: 730 RQLPHHNST--PIVAVTAHAASGEREHLLQAGMDDYLAKPIDEKMLTRVLSRYH 781
>gi|255547688|ref|XP_002514901.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223545952|gb|EEF47455.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 1005
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 173/345 (50%), Gaps = 23/345 (6%)
Query: 320 LLIVMTVGVLISMLTF--VFKSA--RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFA 375
L I ++GVL+ +L +F + R A+ E + ME ++AE + KS A
Sbjct: 366 LAITTSIGVLVIVLLIGHIFHATVNRIAKVE----DDYHEMMELKKRAEAADIAKSQFLA 421
Query: 376 NASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAG 435
SH+IR + G+ G++ + ++ + +R L+ L+N +LD +K+E+G
Sbjct: 422 TVSHEIRTPMNGVLGMLHML-MDTNLDVTQQDYVRTAQASGKALVSLINEVLDQAKIESG 480
Query: 436 KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILS 495
K++L F++ +L+DV+ LF A KGVE+ + SD SV + + GD + +QI+
Sbjct: 481 KLELENVQFNLRAILDDVLPLFSEKAQVKGVELAVYISD-SVPEL--LIGDPGRFRQIII 537
Query: 496 NLLSNAVKFTSEGH--ISVRACVKKPSAIGNPSLSSSRH---GFLQSISCLFYKNKKARG 550
NL+ N++KFT +GH ++V + +I + SSSR+ GF + + +
Sbjct: 538 NLMGNSIKFTHQGHVFVTVHLVEEVIDSIDVETGSSSRNTVSGFPVADRRRSWAGFRTFS 597
Query: 551 DLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV----KEGEGGTGLGLGI 606
+ A + + V+DTG+GIP E + +F ++QV GGTG+GL I
Sbjct: 598 QEGSNRALLPSSDHINLIVSVEDTGEGIPLEAQPRIFIPFMQVGPSTSRKYGGTGIGLSI 657
Query: 607 VQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
+ LV LM G+I V GT F F A ++ N+ N+Q
Sbjct: 658 SKCLVGLMNGEIGFVSIP--RIGTTFTFTAVFANGCSNTNECNSQ 700
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 30/150 (20%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G+KIL+ DD+ + +VA L+ GA V E+GE A++L L PH
Sbjct: 856 LLGRKILIVDDNSVNLKVAAGALKKYGADVVCIESGEKAIKL----------LTPPH--Q 903
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEK--RNQV----------------HIPIIALTAHI 1097
+D MD +MP M+G+EATR+IR+ E +N + H+PI+A+TA +
Sbjct: 904 FDACFMDIQMPEMDGFEATRRIRDREHNFKNSIQSGDKTVGGYENLPNWHVPILAMTADV 963
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ + GMD ++ KP + L +
Sbjct: 964 IQATHEECSKCGMDGYVSKPFEAEQLYREV 993
>gi|255534129|ref|YP_003094501.1| ATPase [Pedobacter heparinus DSM 2366]
gi|255347113|gb|ACU06439.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
2366]
Length = 1196
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 131/270 (48%), Gaps = 54/270 (20%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
+Q E+ + KS AN SH++R L I L +L E + LL
Sbjct: 520 EQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSENKELDKEYIEYAEVIQSSGQGLL 579
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDGSVLK 479
GL++ ILD SK+EAGKM+L D ++ E+ D+ LF P+A K +++V+D SD
Sbjct: 580 GLIDEILDLSKIEAGKMKLEFTDVNITEVATDMRSLFSPLAKNKNLDLVIDVESD----- 634
Query: 480 FSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSIS 539
S + DR++L+QIL NLLSNA+KFTS G +++
Sbjct: 635 ISGINTDRMRLEQILKNLLSNAIKFTSTGKVAL--------------------------- 667
Query: 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKE 595
++D+ F+V DTG GIP +K+ +FE + Q +
Sbjct: 668 -----------------TVKQDDAGKAILFKVTDTGIGIPLDKQGLIFEAFQQADGSTRR 710
Query: 596 GEGGTGLGLGIVQSLVRLMGGDIEIVDKEN 625
GGTGLGL I + L +L+GG+IE+ KEN
Sbjct: 711 KFGGTGLGLSISRELSKLLGGEIELTSKEN 740
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 33/210 (15%)
Query: 935 MPNASVLLKTGNSSGEGPRRDIMPNA-SVLLKTGNSSG---EGSSRYKQTEIEEEDGERS 990
+ N +++ TG + +G I A S+++KT +S + ++ + +EE++G+
Sbjct: 997 LENLPIIIFTGKNLSKGEESRIKQYADSIVVKTAHSYQRILDEAALFLHL-VEEKEGDGK 1055
Query: 991 QAQKP----------LRGKKILVADDSMMLRRVAEIN--LRHLGATVEACENGEAALQLV 1038
Q + P L K +L+ADD + R + + L V A +G+ ALQ +
Sbjct: 1056 QKKNPSEKLGGLYEVLHHKTVLIADDDV--RNIFSLTKALEQHKMKVLAATDGKEALQTL 1113
Query: 1039 RSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHIS 1098
+ P + D +LMD MP M+GYE T++IR+ Q +P++A+TA
Sbjct: 1114 KDN---------PLV---DIVLMDMMMPEMDGYETTKEIRKIAAYKQ--LPVLAVTAKAM 1159
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ +K I AG ++ KP++ D L+ ++
Sbjct: 1160 MGDREKCIAAGASDYISKPVDIDQLISLLR 1189
>gi|46580817|ref|YP_011625.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46450237|gb|AAS96885.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
Hildenborough]
Length = 1035
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 141/293 (48%), Gaps = 42/293 (14%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE-LETNLRQMNVCANDL 419
Q+AE S KS+ AN SH+IR L I GL EL E P S+ + NLR + A L
Sbjct: 502 QRAEEASRAKSVFLANMSHEIRTPLNAIIGLTELTLQE--PISQGVGENLRGVLHSAEAL 559
Query: 420 LGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLK 479
L ++N +LD S+VE+G++ L +F L VV L VA RKG++ L +
Sbjct: 560 LAVVNDLLDLSRVESGRLHLESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVP-- 617
Query: 480 FSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSIS 539
V GD +L+Q+L NL+ NA+KFT EG +S+ P + S+
Sbjct: 618 -PTVTGDPARLRQVLLNLVGNALKFTDEGGVSLTV---------TPCICST--------- 658
Query: 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE-- 597
D + F V DTG GIP +++ +FE++VQ E
Sbjct: 659 -----------DTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESFVQADESTAR 707
Query: 598 --GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
GGTGLGL I + LV +MGG +E+ + +G+ F +V A E +A D
Sbjct: 708 RFGGTGLGLAISRRLVEMMGGRLEL--RSEPGKGSEFWCDVPFA-SEGAARDG 757
>gi|304312962|ref|YP_003812560.1| sensory box histidine kinase/response regulator [gamma
proteobacterium HdN1]
gi|301798695|emb|CBL46927.1| sensory box histidine kinase/response regulator [gamma
proteobacterium HdN1]
Length = 833
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 161/305 (52%), Gaps = 35/305 (11%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E + AE + +K+ AN SH++R + G+ G++ L +E S+ + + + N
Sbjct: 293 ENKRVAEASAEDKAQFLANMSHELRTPMHGVLGMLSLL-LETQLSSDQQHYVEVAHESGN 351
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL LLN++LD SK+E K+ L +FD+ + +E+VV + A K +E+V+ + SV
Sbjct: 352 ILLELLNNVLDLSKIEHNKLALERVEFDLRQAIEEVVVILGESANSKLLELVV-WQNASV 410
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
S+V GD ++LKQI+ NLL NA+KFT++GH+ + V ++R G + S
Sbjct: 411 P--SRVVGDPIRLKQIVFNLLGNAIKFTTQGHVEISYAVIS---------ENTRRGVVDS 459
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
F + + V+ + DE + F+V DTG G+ ++ ++ +FE + Q
Sbjct: 460 AEADFQAQE------QDVSESVGDE--LWIRFDVSDTGVGLSEDVQEKIFEAFTQADSTT 511
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV--------FLAIREASA 645
GG+GLGL + + +V+LMGG I V+ E G +G+ F F + A+RE +
Sbjct: 512 TRVYGGSGLGLALCKQIVKLMGGAIG-VESELG-KGSKFWFEIPFGKTPQTLPALREIAL 569
Query: 646 NDNNT 650
N N
Sbjct: 570 NSNKV 574
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 77/132 (58%), Gaps = 14/132 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D + R+VA L+ LG E ENGE AL+++++ YD I
Sbjct: 709 RILVVEDHPINRQVAVGLLKKLGFVPEVAENGEIALKMMQNQ-------------AYDLI 755
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP+M+GY TR +R+ E+ + PIIA+TAH + ++ EAGMD +L KP+
Sbjct: 756 LMDLQMPVMDGYSTTRTVRQWEREGRRRTPIIAMTAHALSGDRERCAEAGMDDYLAKPVK 815
Query: 1120 RDHLMEAI-KYL 1130
+ LM + K+L
Sbjct: 816 AELLMAVLGKWL 827
>gi|452966289|gb|EME71301.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
Length = 1187
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 135/290 (46%), Gaps = 55/290 (18%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
AE S KSL A SH+IR + G+ + L P + E R + A LL +
Sbjct: 523 AEEASQAKSLFLATMSHEIRTPMNGVLTMAHLLEDMPLPAEQREMA-RVIRDSATSLLTI 581
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGSVLKF 480
+N ILD SK+EAGK+QL + V EL+E V DL A KG+ ++ ++P+
Sbjct: 582 INDILDFSKIEAGKLQLELVELSVSELVEGVADLLTIRAQEKGISLITFVEPALA----- 636
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
+V GD ++L+QI++NL NA+KFT +G++ + A P
Sbjct: 637 DRVVGDPIRLRQIITNLAGNAIKFTDKGYVRISARAMDPR-------------------- 676
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEG 596
E + F + DTG G+ E++ +FE ++Q +
Sbjct: 677 ---------------------ERPLRLEFAITDTGIGLDAEQQARLFEPFMQADVTISRR 715
Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
GGTGLGL I + LV +M GDI + + N +G+ F F V L EA A
Sbjct: 716 YGGTGLGLSICRRLVAMMEGDIGV--RSNIGQGSTFWFQVPLEPVEAEAE 763
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + V + LG +E NG A + + I Y +L
Sbjct: 929 ILVAEDNPTNKVVIRHLMERLGYAIEVVGNGAEAWERM-------------QIRDYGLLL 975
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
DC MP M+GYE T++IRE E +PI+ALTA A + ++ GM+ L KP++
Sbjct: 976 TDCHMPEMDGYELTQRIREWEMETGHLLPIVALTADALAGTARRCLDCGMNAFLAKPIDL 1035
Query: 1121 DHLMEAIKYL 1130
L I+ L
Sbjct: 1036 AQLDATIRRL 1045
>gi|443319120|ref|ZP_21048357.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
gi|442781318|gb|ELR91421.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
Length = 586
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 158/316 (50%), Gaps = 54/316 (17%)
Query: 336 VFKSARAARKEMHLCASLIKQM-----EATQQAERKSMNKSLAFANASHDIRAALAGITG 390
+F +++ +E+ ++Q EA +QAE S KS AN SH++R L G+ G
Sbjct: 300 LFSESQSLTEELQAVNDSLRQKHEELEEARRQAEEASRLKSEFLANTSHELRTPLNGMIG 359
Query: 391 LIELCYV-EAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449
+ L A E + L + + A LL L+N +LD +K+EAGKMQ+ ++ EL
Sbjct: 360 FLRLILDGMADDPEEQKEFLDEAHNSALHLLNLINDVLDIAKIEAGKMQIDMVPLNLREL 419
Query: 450 LEDVVDLFHPVAMRKGV--EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE 507
L+ V + P A RKG+ E+ P+ ++ ++G+ +L Q++ NL+ NA+KFT E
Sbjct: 420 LQAVENFTRPQAERKGLAFEISFPPTRDEII----LQGNYQRLLQVILNLVGNAIKFTHE 475
Query: 508 GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEF 567
G +++ A VK LQ ++ ++N++ G ++
Sbjct: 476 GSVTISAEVK-----------------LQKVT---FQNQEWPGTVK-------------- 501
Query: 568 TFEVDDTGKGIPKEKRKTVFENYVQVKEGE-----GGTGLGLGIVQSLVRLMGGDIEIVD 622
V+DTG G+ EK+ +F+ + QV +GE GGTGLGL I Q LV MGG ++ +
Sbjct: 502 -ISVEDTGIGVSLEKQDRLFQTFSQV-DGERTRQYGGTGLGLAISQKLVEAMGGVVKFIS 559
Query: 623 KENGERGTCFRFNVFL 638
G G+ F V L
Sbjct: 560 MGEG-LGSTVTFTVLL 574
>gi|428223164|ref|YP_007107334.1| signal transduction histidine kinase [Synechococcus sp. PCC 7502]
gi|427996504|gb|AFY75199.1| signal transduction histidine kinase [Synechococcus sp. PCC 7502]
Length = 686
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 46/284 (16%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A ++A S K+ F N SH++R L + G +L + ++ + + A
Sbjct: 291 QAKEEALTASQAKTAFFTNMSHELRTPLNAVLGFTQLMLYDHTTPPDIREQVNTIYRSAE 350
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+NS+L+ S++EAGK L + FD+ +LL+ V +L A KG+ ++ + +
Sbjct: 351 HLLALINSVLEISRIEAGKETLNCQGFDLQDLLKSVRELLEHRAKEKGLTLIFELAPDLE 410
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L + D +KLKQIL NLL+NA+KFT+ GHI++R
Sbjct: 411 L---TLYSDEMKLKQILINLLNNAIKFTTAGHITLRV----------------------- 444
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
++ D + Q+ E + FEV+DTG GI E VFE + Q +G
Sbjct: 445 ----------SKYDRQYNQQDQQQETYL--YFEVEDTGIGIESENLHRVFEGFFQ-SQGN 491
Query: 598 G-----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
G GTGLGL I +S V LMGGD+++ +G+ F F +
Sbjct: 492 GGRSQEGTGLGLAISKSFVNLMGGDLKVTSTVG--KGSTFSFYI 533
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 14/128 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D+++ ++V L +LG + ENG L+ A H YD I
Sbjct: 566 RILLAEDNIVNQKVMLKMLSYLGYIADVVENGVEVLE-------------ALHHRHYDLI 612
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD +MP+M+G AT +I + + IIALTA+ E+ + + AGM +L KP+
Sbjct: 613 FMDIQMPVMDGLTATHEIFAQWSPPDRPM-IIALTANAMQEDREVCLAAGMAEYLTKPIK 671
Query: 1120 RDHLMEAI 1127
L E +
Sbjct: 672 ISLLQEIL 679
>gi|410663989|ref|YP_006916360.1| PAS domain-containing protein [Simiduia agarivorans SA1 = DSM 21679]
gi|409026346|gb|AFU98630.1| PAS domain-containing protein [Simiduia agarivorans SA1 = DSM 21679]
Length = 1423
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 138/287 (48%), Gaps = 57/287 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A + AE S+ KS AN SH+IR L I G+ +L +E L+ + ++
Sbjct: 770 AIKNAEEASLAKSQFLANISHEIRTPLNAIIGMSQLTL-----NTEQLRYLKTIEYSSHT 824
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LLG++N +LD SK+EAGK+Q+ F++ LE + + A KGV+ +LD G
Sbjct: 825 LLGVINDVLDFSKIEAGKLQIESIPFNLEASLEAISQMTALRAQEKGVDFLLDIDIGVP- 883
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
S++ GD ++L QIL+NL SNA KFT +GHI+ +G LS +
Sbjct: 884 --SQLVGDPLRLSQILTNLCSNATKFTEQGHIT----------LGTKLLSET-------- 923
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
E + F V+DTG G+ E++ +F+ + Q V
Sbjct: 924 -----------------------EQTVTLEFFVEDTGIGLSAEQQAQLFKAFAQADPSVT 960
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR 641
GGTGLGL I + LVRLMG +I + E G RF+ L ++
Sbjct: 961 RRYGGTGLGLSICRELVRLMGSEIRVT----SEVGLGSRFSFSLTLQ 1003
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LRG +L+ +D+ + + +A G V NG+ A+ G
Sbjct: 1161 LRGASLLLVEDNEINQEIAREIFESAGFNVNVASNGQDAVDWFSQG-------------H 1207
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D ILMD +MP+++G ATR IR EK V PIIA+TA+ E+ + + AGM+ +L
Sbjct: 1208 ADLILMDVQMPVLDGESATRTIRATEKGQSV--PIIAMTANAMKEDEQRCLAAGMNDYLT 1265
Query: 1116 KPLNRDHLMEAI 1127
KP+N D + +
Sbjct: 1266 KPINIDKALATV 1277
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 20/143 (13%)
Query: 993 QKPLRGK----KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
QK LR IL+ +D+ + + L+ +G V C+ GE AL + L++ D
Sbjct: 1010 QKALRSTHSELSILLVEDNAATADLLMLALKKMGHRVTHCDGGEQAL----AHLSNHAD- 1064
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIAL-TAHISGEEADKTIE 1107
YD +L+D ++P G I + + R+ + P++ + TA E A +
Sbjct: 1065 -------YDVLLVDWQLP---GIPGDALISQVKSRSDENTPVVVMITAFEETEAAPVACQ 1114
Query: 1108 AGMDVHLGKPLNRDHLMEAIKYL 1130
AG D L KP++ L + + L
Sbjct: 1115 AGADALLIKPISASTLFDTLDNL 1137
>gi|167646509|ref|YP_001684172.1| histidine kinase [Caulobacter sp. K31]
gi|167348939|gb|ABZ71674.1| histidine kinase [Caulobacter sp. K31]
Length = 698
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 145/305 (47%), Gaps = 61/305 (20%)
Query: 341 RAARKEMHLC-----ASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELC 395
R +E+H A++ +EA +AER S+ KS AN SH+IR L G+ G+ ++
Sbjct: 291 RQVLRELHASEAGQKAAMADVVEARDRAERASLAKSQFLANMSHEIRTPLNGVLGMAQVM 350
Query: 396 YVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVD 455
+G GS +L+ + LL +LN +LD SK+EAG+ +L + FD+ E +
Sbjct: 351 E-RSGLGSPHREHLKIIRDSGETLLAILNDVLDLSKIEAGRFELDDHVFDLAETIGAACR 409
Query: 456 LFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRAC 515
F +A +K V V D + ++ + GD V+L+Q+LSNL SNAVKFT EG I +
Sbjct: 410 PFALLARQKDVAFVKDIAPDALGAWC---GDSVRLRQVLSNLASNAVKFTHEGQIRL--- 463
Query: 516 VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTG 575
++ ++ G TF + DTG
Sbjct: 464 ----------TVGATSEG---------------------------------LTFTLTDTG 480
Query: 576 KGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTC 631
GI ++ ++FE +VQ GGTGLGL I + LV MGG + + D G +G+
Sbjct: 481 IGIAPDRIASLFEKFVQADSSTTRRFGGTGLGLAISRELVERMGGTLRM-DSAPG-KGST 538
Query: 632 FRFNV 636
F F +
Sbjct: 539 FVFRL 543
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
Query: 945 GNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKP----LRGKK 1000
G G R+++ L+ ++ G+GS+ + E A P +R +
Sbjct: 508 GTGLGLAISRELVERMGGTLRMDSAPGKGSTFVFRLPFERVGAVDYLAPAPEEGDIRSLR 567
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL A+D++ + + L G + NG A+ + + YD IL
Sbjct: 568 ILAAEDNLTNQFILRALLESAGVDLHTVANGREAVDAFHADAD---------AYAYDLIL 618
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD +MP+MNG EA R IRE E ++ + PI+AL+A++ + D+ AGMD + KPL+
Sbjct: 619 MDVQMPVMNGVEAARAIRERESQHSLSPTPILALSANVMSHQLDEYARAGMDGVVAKPLD 678
Query: 1120 RDHLMEAI 1127
L+EAI
Sbjct: 679 AGKLIEAI 686
>gi|387154077|ref|YP_005703013.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
gi|311234521|gb|ADP87375.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
Length = 975
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 141/293 (48%), Gaps = 42/293 (14%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE-LETNLRQMNVCANDL 419
Q+AE S KS+ AN SH+IR L I GL EL E P S+ + NLR + A L
Sbjct: 442 QRAEEASRAKSVFLANMSHEIRTPLNAIIGLTELTLQE--PISQGVGENLRGVLHSAEAL 499
Query: 420 LGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLK 479
L ++N +LD S+VE+G++ L +F L VV L VA RKG++ L +
Sbjct: 500 LAVVNDLLDLSRVESGRLHLESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVP-- 557
Query: 480 FSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSIS 539
V GD +L+Q+L NL+ NA+KFT EG +S+ P + S+
Sbjct: 558 -PTVTGDPARLRQVLLNLVGNALKFTDEGGVSLTV---------TPCICST--------- 598
Query: 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE-- 597
D + F V DTG GIP +++ +FE++VQ E
Sbjct: 599 -----------DTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESFVQADESTAR 647
Query: 598 --GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
GGTGLGL I + LV +MGG +E+ + +G+ F +V A E +A D
Sbjct: 648 RFGGTGLGLAISRRLVEMMGGRLEL--RSEPGKGSEFWCDVPFA-SEGAARDG 697
>gi|295134137|ref|YP_003584813.1| two-component system sensor histidine kinase/response regulator
hybrid [Zunongwangia profunda SM-A87]
gi|294982152|gb|ADF52617.1| two-component system sensor histidine kinase/response regulator
hybrid [Zunongwangia profunda SM-A87]
Length = 1567
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 157/316 (49%), Gaps = 64/316 (20%)
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS 403
RKEM SL+ EA +AE S +KS AN SH+IR L G+ G +L +
Sbjct: 919 RKEME--NSLV---EAKLKAEAASKSKSEFLANMSHEIRTPLNGVIGFTDLLM-----KT 968
Query: 404 ELETNLRQ----MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHP 459
EL T+ +Q + AN LL L+N ILD SK+EAGK++L E ++ EL +D+
Sbjct: 969 ELNTSQKQYMETVYNSANTLLDLINDILDFSKIEAGKLELSVEKINIIELCGQTIDVVKH 1028
Query: 460 VAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
A KG+EV+L+ S V ++ + GD V+++QIL+NLL NAVKFT++G I +R
Sbjct: 1029 KAHEKGLEVLLNISQ-KVDRY--IYGDSVRIRQILTNLLGNAVKFTNKGEIELR------ 1079
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
+EA N + E+ E+TF V DTG GI
Sbjct: 1080 --------------------------------IEAGN--KNTEHQREYTFIVRDTGIGIA 1105
Query: 580 KEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
+ + +F+ + Q GGTGLGL I L+ LM ++ V E G G+ F F
Sbjct: 1106 PQNLERIFKAFDQEDSSTTRKYGGTGLGLTISNKLLYLMNSKLD-VQSEPG-IGSSFSFK 1163
Query: 636 VFLAIRE-ASANDNNT 650
V+ E AS D N+
Sbjct: 1164 VYFESEEGASFLDENS 1179
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 21/133 (15%)
Query: 1000 KILVADDSMMLRRVAEINLRHL--GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
++L+A+D+ + + +A+ L A + ENG+ A+ + P D
Sbjct: 1328 RVLIAEDNPVNKFLAKTILTKAVPNAEIVEVENGQDAVSFYKEH-------------PLD 1374
Query: 1058 YILMDCEMPIMNGYEATRKIR--EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
I MD +MPIM+G+EA+ +IR E ++ Q H+PIIALTA E ++ ++AGMD ++
Sbjct: 1375 IIFMDIQMPIMSGFEASEEIRKYESDQNEQQHVPIIALTARTVKGEKERCLDAGMDDYIT 1434
Query: 1116 KPLNRDHLMEAIK 1128
KP+ + E IK
Sbjct: 1435 KPV----VFETIK 1443
>gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 972
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 51/280 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
++ ++AE + KS+ AN SH+IR L GI G+++L P E + L N
Sbjct: 582 QSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKT-TDPNDEQKEYLLGAIRSTN 640
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
L LL+ ILD S++EAG+MQ++E +FD+ + + + +LF A KG+ + +D
Sbjct: 641 RLTRLLSDILDVSRIEAGRMQIVEAEFDIKMVRDSISELFDMEARGKGLLLEFRWNDNLP 700
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L ++ GD V+L+QIL NL+ NA+KFT +G I + AC+ P A
Sbjct: 701 L---RLIGDEVRLRQILFNLVGNAIKFTEKGTIRIDACL-LPRA---------------- 740
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
++++ V DTG GI +E K +FE +VQ EG
Sbjct: 741 -----------------------SDSSVRVLVTVGDTGIGISEEHLKDIFEPFVQA-EGS 776
Query: 598 -----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
G GLGL IV+ LV+L+ GDI I D GE T +
Sbjct: 777 YTRRFQGAGLGLSIVRRLVKLLDGDISI-DSTPGEGSTFY 815
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 22/170 (12%)
Query: 968 NSSGEGSSRY-------KQTEIEEEDGERSQAQKPLR-GKKILVADDSMMLRRVAEINLR 1019
++ GEGS+ Y T + E+ A P R ++IL+A+D + + L
Sbjct: 806 STPGEGSTFYLSLPFKLPATSQKTEELIAYGASPPGRVPRRILLAEDDALSSLTCKRMLE 865
Query: 1020 HLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079
G +V A +G+ ALQL L +Q +D ILMD +MP+M+G EAT+ IR
Sbjct: 866 KSGYSVAAANDGQKALQL----LTEQ---------DFDLILMDVQMPVMDGVEATKAIRG 912
Query: 1080 EEKRN-QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ IPI+A+TA+ + +K + +GMD ++ KP++++ L+E ++
Sbjct: 913 SSILGVKSSIPIVAMTAYAMSGDKEKFLASGMDDYIAKPVDKEALVEVVE 962
>gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase
[Desulfonatronospira thiodismutans ASO3-1]
gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase
[Desulfonatronospira thiodismutans ASO3-1]
Length = 809
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 151/302 (50%), Gaps = 68/302 (22%)
Query: 356 QMEATQ-QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN- 413
Q+EA + +AE + KS AN SH+IR L GITG+++L + L++N ++
Sbjct: 414 QLEAARDKAETANRAKSEFLANMSHEIRTPLNGITGMMQLLQT-----TRLDSNQKEYVD 468
Query: 414 ---VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV-- 468
A+ L LL+ ILD S+VEAG+M ++EE+F+V EL V +LF A KG+E+
Sbjct: 469 LALSSASRLTRLLSDILDLSRVEAGRMVILEEEFNVQELCRSVCELFRIQAGEKGIELEY 528
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
LDPS S++ GD +L+QIL NL+ N++KFT EG + + ++K
Sbjct: 529 TLDPSLP-----SRLMGDETRLQQILFNLVGNSLKFTREGRVRINWTLQKRGL------- 576
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
RH L +++ DTG GI EK +F+
Sbjct: 577 -DRHQVLITVT---------------------------------DTGSGIAPEKLDDLFQ 602
Query: 589 NYVQVKEGEG-----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+VQ ++G G GLGL IV LV LM G I VD GE GT F +FL ++
Sbjct: 603 PFVQ-EDGSSTRRHEGAGLGLSIVSRLVDLMHGTIS-VDSAPGE-GTAFY--IFLPLKVP 657
Query: 644 SA 645
+A
Sbjct: 658 AA 659
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 27/176 (15%)
Query: 964 LKTGNSSGEGSSRY--------KQTEIEEEDGERSQ--AQKPLRGKKILVADDSMMLRRV 1013
+ ++ GEG++ Y E +++D ++ A KPLR ILVA+D +
Sbjct: 636 ISVDSAPGEGTAFYIFLPLKVPAAPEADQDDALQNHKGAGKPLR---ILVAEDEPTNQLF 692
Query: 1014 AEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073
A L +LG V E+G AL+L++ +D ILMD MP M+G EA
Sbjct: 693 AGRLLEYLGHKVMIAEDGSQALELLQQH-------------EFDCILMDIRMPFMDGLEA 739
Query: 1074 TRKIR-EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
R IR E + +PIIA+TAH + + +AGM+ +L KP+ ++ L + ++
Sbjct: 740 ARAIRTSRELGARRDVPIIAMTAHAMEGDREVFFQAGMNGYLAKPVQKEDLEKVLQ 795
>gi|392982798|ref|YP_006481385.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
gi|419754930|ref|ZP_14281288.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PADK2_CF510]
gi|384398748|gb|EIE45153.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PADK2_CF510]
gi|392318303|gb|AFM63683.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
DK2]
Length = 918
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 149/294 (50%), Gaps = 59/294 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
+ Q GG+GLGL I + LV++MGG IE V E G +GT F ++ L+
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIE-VSSEPG-KGTQFSVDLPLS 634
Score = 80.5 bits (197), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|418063333|ref|ZP_12701026.1| PAS/PAC sensor signal transduction histidine kinase, partial
[Methylobacterium extorquens DSM 13060]
gi|373559802|gb|EHP86085.1| PAS/PAC sensor signal transduction histidine kinase, partial
[Methylobacterium extorquens DSM 13060]
Length = 478
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 137/289 (47%), Gaps = 50/289 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +AE ++ KS A SH++R L GI G+ +L ++ E T +
Sbjct: 166 EAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLL-LDTRLDPEQRTYVEAFRTSGK 224
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLGL++ ILD S++EAG++ L E FDV L+E VV+L P A KG+E+ LD +D
Sbjct: 225 ALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADD-- 282
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L +V GD +++QIL NL NA+KFT G + V SL+ S G
Sbjct: 283 LAALRV-GDADRVRQILVNLAGNAIKFTQTGGVGV-------------SLARSGEG---- 324
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+ G V+DTG GIP+E+ +FE + Q +
Sbjct: 325 ---------QGEG----------------LVLTVEDTGPGIPEERIPILFEEFEQGDDSA 359
Query: 598 G--GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GTGLGL I + LV M G IE + RG+ FR + L E +
Sbjct: 360 SHEGTGLGLAITRRLVERMNGTIEA--RSTVGRGSTFRVMLPLPAAEGA 406
>gi|153870595|ref|ZP_01999963.1| signal transduction histidine kinase [Beggiatoa sp. PS]
gi|152072938|gb|EDN70036.1| signal transduction histidine kinase [Beggiatoa sp. PS]
Length = 1313
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 130/267 (48%), Gaps = 42/267 (15%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA + AE + KS A+ SH++R L GI G ++ + + + ++ +
Sbjct: 825 LEAKEVAESANQAKSTFLASMSHELRTPLNGILGYTQIFNHDKSLTEKQQEGIQIIQRSG 884
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL L+N ILD SK+E+GK++L+ DF L+D+ DLF A +K VE + +P S
Sbjct: 885 EHLLTLINDILDLSKIESGKLELMPTDFRFSNFLKDIADLFRMRAEQKNVEFIYEPL--S 942
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
L + V D +L+Q+L NLLSNAVKFT EG +S +
Sbjct: 943 QLP-TAVYADEKRLRQVLLNLLSNAVKFTQEGQVSFKVI--------------------- 980
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV--- 593
++V A +EN FEV+D G+GI + + +F + QV
Sbjct: 981 ---------------YQSVPAPSTEENKNTIRFEVEDAGQGIAPDDLERIFLPFQQVGDQ 1025
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEI 620
E GTGLGL I + LV +M G +++
Sbjct: 1026 SEQVEGTGLGLPISKKLVEMMAGQLQM 1052
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 957 MPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEI 1016
+P + V+L ++ +K+ G+R Q KILV DD R V
Sbjct: 1068 LPESKVILHDRQTTKPNIIGFKKK------GDRGQETGEPESFKILVVDDKWENRVVLTN 1121
Query: 1017 NLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076
L LG + +G+ AL+ + D I+MD +MP+M+G E TR
Sbjct: 1122 ILNPLGFDILEAHDGQDALEKIEQ-------------FHPDAIIMDLKMPVMDGLECTRY 1168
Query: 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+R+ ++ Q IIAL+A++ + ++++AG L KP++ + ++ +
Sbjct: 1169 LRQLDQFQQT--VIIALSANVFEHQQKESLKAGCHAFLTKPIDTEKFLQVL 1217
Score = 40.8 bits (94), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 1028 CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH 1087
ENGE+AL+ ++ ++ P D IL+D MP M+G+E R ++ E+ +
Sbjct: 3 AENGESALKRIK------------YVKP-DIILLDIMMPGMDGFETCRWLKANEESKE-- 47
Query: 1088 IPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
IP+I ++A + K E G ++ KP+ + ++ +K
Sbjct: 48 IPVIFMSALNDTVDKVKGFELGAVDYITKPVQVEEVLARLK 88
>gi|421113735|ref|ZP_15574174.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
JET]
gi|410800835|gb|EKS07014.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
JET]
Length = 821
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + ++ ++V A
Sbjct: 424 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVKILSVSA 482
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L +E F + +L+++ DL +P+A +K + + L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRL---EGK 539
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD+++L+QIL NL N +KFT+ G + +
Sbjct: 540 FDIQEYVYGDQLRLRQILWNLTGNGIKFTNHGEVVL------------------------ 575
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+V+ +N + F V D+G GIP EK+K VF+ + Q
Sbjct: 576 -----------------SVSQENISKNNISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTS 618
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG + + KE G+ F F + I S + +
Sbjct: 619 TARKFGGSGLGLSITKQLVELQGGTLNLESKEG--FGSKFTFAITYDIPSESEIEKILEA 676
Query: 653 EK 654
EK
Sbjct: 677 EK 678
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + G KILVA+D+ + E L+ LG NG ++ +
Sbjct: 680 KDLESAYSNATSNGMKILVAEDNETNCLLIERALKKLGYDPVVVRNGREVIEKM------ 733
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
Q D +D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 734 QLDF-------FDLILMDIHMPEVDGIEATKWIRSQKQNAEFPI-IIALTADVIESNKEI 785
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ L KPL+ L +++ +
Sbjct: 786 YISKGMNDCLTKPLDLPLLKKSLDF 810
>gi|422003900|ref|ZP_16351126.1| histidine kinase response regulator hybrid protein [Leptospira
santarosai serovar Shermani str. LT 821]
gi|417257447|gb|EKT86849.1| histidine kinase response regulator hybrid protein [Leptospira
santarosai serovar Shermani str. LT 821]
Length = 821
Score = 123 bits (308), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + ++ ++V A
Sbjct: 424 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVKILSVSA 482
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L +E F + +L+++ DL +P+A +K + + L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRL---EGK 539
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD+++L+QIL NL N +KFT+ G + +
Sbjct: 540 FDIQEYVYGDQLRLRQILWNLTGNGIKFTNHGEVVL------------------------ 575
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+V+ +N + F V D+G GIP EK+K VF+ + Q
Sbjct: 576 -----------------SVSQENISKNNISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTS 618
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG + + KE G+ F F + I S + +
Sbjct: 619 TARKFGGSGLGLSITKQLVELQGGTLNLESKEG--FGSKFTFAITYDIPSESEIEKILEA 676
Query: 653 EK 654
EK
Sbjct: 677 EK 678
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + G KILVA+D+ + E L+ LG NG ++ ++
Sbjct: 680 KDLESAYSNATSNGMKILVAEDNETNCLLIERALKKLGYDPVVVRNGREVIEKMQ----- 734
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+ +D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 735 --------LYFFDLILMDIHMPEVDGIEATKWIRSQKQNAEFPI-IIALTADVIESNKEI 785
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ L KPL+ L +++ +
Sbjct: 786 YISKGMNDCLTKPLDLPLLKKSLDF 810
>gi|418745911|ref|ZP_13302246.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
CBC379]
gi|410793295|gb|EKR91215.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
CBC379]
Length = 821
Score = 123 bits (308), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + ++ ++V A
Sbjct: 424 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVKILSVSA 482
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L +E F + +L+++ DL +P+A +K + + L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRL---EGK 539
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD+++L+QIL NL N +KFT+ G + +
Sbjct: 540 FDIQEYVYGDQLRLRQILWNLTGNGIKFTNHGEVVL------------------------ 575
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+V+ +N + F V D+G GIP EK+K VF+ + Q
Sbjct: 576 -----------------SVSQENISKNNISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTS 618
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG + + KE G+ F F + I S + +
Sbjct: 619 TARKFGGSGLGLSITKQLVELQGGTLNLESKEG--FGSKFTFAITYDIPSESEIEKILEA 676
Query: 653 EK 654
EK
Sbjct: 677 EK 678
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + G KILVA+D+ + E L+ LG NG ++ +
Sbjct: 680 KDLESAYSNATSNGMKILVAEDNETNCLLIERALKKLGYDPVVVRNGREVIEKM------ 733
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
Q D +D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 734 QLDF-------FDLILMDIHMPEVDGIEATKWIRSQKQNAEFPI-IIALTADVIESNKEI 785
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ L KPL+ L +++ +
Sbjct: 786 YISKGMNDCLTKPLDLPLLKKSLDF 810
>gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 869
Score = 123 bits (308), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 135/284 (47%), Gaps = 54/284 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A + AE S KS AN SH+IR L G+ G+++L A G E + AN
Sbjct: 481 AKEAAESASQAKSEFLANMSHEIRTPLNGVMGILQLLETSA-EGQEQKQFCTLALQSANR 539
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGS 476
L LL+ ILD S+VEAGK+ + E F + E L V+DLF P A++ GVE+ +DP
Sbjct: 540 LNRLLSDILDLSRVEAGKLHIQSEPFRLHETLVQVLDLFVPTAVQSGVELRHHVDPGLP- 598
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ + GD ++L+Q+L NL+ NA KFT+ G+++V A P +P
Sbjct: 599 ----NSIVGDPIRLQQVLGNLIGNAFKFTTTGYVNVEA---YPLPAKHP----------- 640
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+ F V DTG GI + K +F + QV +G
Sbjct: 641 --------------------------GQLRIFFSVSDTGCGISDKDLKNLFTPFTQVSQG 674
Query: 597 EG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
G GLGL I + LV LMGG++ V+ E G GT F F V
Sbjct: 675 YAKSHQGAGLGLSICKHLVTLMGGNMA-VESETG-VGTTFSFCV 716
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 20/133 (15%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+A+D + + L G TV NGE AL L+ G +D +D +
Sbjct: 742 RVLLAEDDEVTQFAVRKLLEKAGYTVSIARNGEEALDLL--GAHD-----------FDAV 788
Query: 1060 LMDCEMPIMNGYEATRKIRE----EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
LMD +MP+M G EATR IR E KR+ IPIIALTA+ + +K ++AGM+ ++
Sbjct: 789 LMDIQMPVMGGIEATRLIRSSATPEAKRS---IPIIALTAYAMAGDREKFLDAGMNDYIA 845
Query: 1116 KPLNRDHLMEAIK 1128
KP+ L +A++
Sbjct: 846 KPVQVVELKKALE 858
>gi|107102995|ref|ZP_01366913.1| hypothetical protein PaerPA_01004064 [Pseudomonas aeruginosa PACS2]
Length = 918
Score = 123 bits (308), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 149/294 (50%), Gaps = 59/294 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ + L+ ++N ILD +++E+GK+ L DFD+ ELL D + LF A+ K + + L
Sbjct: 449 -IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L NLLSNA+KFT+EGH++VR V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + +KT+FE+
Sbjct: 551 ----------------------------RFDEGGRERLLYSVSDSGIGISAQAQKTLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
+ Q GG+GLGL I + LV++MGG IE V E G +GT F ++ L+
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIE-VSSEPG-KGTQFSVDLPLS 634
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ + +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RAELYATLERL 910
>gi|298529160|ref|ZP_07016563.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510596|gb|EFI34499.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1154
Score = 123 bits (308), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 157/322 (48%), Gaps = 51/322 (15%)
Query: 341 RAARKEMHLCASLIKQME--------ATQQAERKSMNKSLAFANASHDIRAALAGITGLI 392
R A +++H A +QME A +A+ S KS AN SH+IR + G+ G+
Sbjct: 383 RQAEEKLHETA---RQMERKTVELDAALTRADAASKAKSEFLANMSHEIRTPMNGVIGMT 439
Query: 393 ELCYVEAGPGSELETNLRQ--------MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDF 444
L LET+L + + LL LLN ILD SK+E+GK++L +F
Sbjct: 440 GLL---------LETDLNETQRRYAETVRSSGQALLALLNDILDFSKIESGKLELEALNF 490
Query: 445 DVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKF 504
D+ + L++ + A KG+E + +D V + GD +++QIL+NL+ NAVKF
Sbjct: 491 DLRDTLDNFASMMAFKAEEKGLEFICS-ADPDVP--DNLIGDPGRIRQILTNLVGNAVKF 547
Query: 505 TSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENA 564
T G + VR +++ + S+ K++ E + +Q E
Sbjct: 548 TERGEVVVRVSIQESGVRRQETGDKSQE-----------TGDKSQ---ETGDKSQESEEF 593
Query: 565 MEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEI 620
F V DTG GIP++K +F+++ QV GGTGLGL I + L LMGG++ +
Sbjct: 594 CMLRFSVRDTGIGIPEDKIGLLFQSFSQVDASVTRKFGGTGLGLAISRQLAELMGGEVGV 653
Query: 621 VDKENGERGTCFRFNVFLAIRE 642
E +GT F F V L++ E
Sbjct: 654 ESIEG--QGTTFWFTVPLSLAE 673
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 50/171 (29%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R +IL+A+D++ ++VA L++ G + +A NG A++ +++ +PY
Sbjct: 839 RKARILLAEDNITNQQVALAMLKNFGLSADAVANGLEAIKALKT-------------VPY 885
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRN-------------------------------- 1084
D +LMD +M M+G ATR+IR E R
Sbjct: 886 DLVLMDVQMLEMDGLAATRRIRAAEIRGRELEVRDQRLKSESQNSSIPESLNPLIPQSLN 945
Query: 1085 ----QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
+ IPIIALTAH ++ +EAGMD +L KPL L E + K+L
Sbjct: 946 SRIPEFRIPIIALTAHAMQGYREQCLEAGMDDYLTKPLEPVQLAEMLDKWL 996
Score = 44.3 bits (103), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LRG + LV DD+ R + G + ++G AL + + L + P
Sbjct: 685 LRGLRALVVDDNATNREILLTRFLDWGLRPDEAKDGPTALGRLYTALAEDD--------P 736
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
Y ++D +MP M+G R IR ++K V + +++ +A + G +A + + L
Sbjct: 737 YHLAIIDMQMPGMDGEFLGRTIRADQKLQDVRLVMMS-SAGMQG-DARRMKDIWFAAFLA 794
Query: 1116 KPLNRDHLMEAI 1127
KPL D L + +
Sbjct: 795 KPLRHDELFDCL 806
>gi|134292637|ref|YP_001116373.1| integral membrane sensor hybrid histidine kinase [Burkholderia
vietnamiensis G4]
gi|134135794|gb|ABO56908.1| integral membrane sensor hybrid histidine kinase [Burkholderia
vietnamiensis G4]
Length = 1021
Score = 123 bits (308), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 150/312 (48%), Gaps = 59/312 (18%)
Query: 332 MLTFVFKSARAARKEMHLCASLIKQME-ATQQAERKSMNKSLAFANASHDIRAALAGITG 390
+L VF A R+ L++Q+E A + A+ + KS A SH+IR L I G
Sbjct: 472 VLIAVFTDTTAQRR-------LVQQLEEAVRAADSANAAKSSFLAATSHEIRTPLNVILG 524
Query: 391 LIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELL 450
+EL A S+ ++ +R + A LL +++ ILD SK+EAG M + +F++ ++
Sbjct: 525 NLELLERTALDASQ-QSRVRTLRASAEGLLAIVSDILDFSKIEAGAMSVESIEFELIAVI 583
Query: 451 EDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHI 510
E + F P+A KG+ + ++ D SV + +++GD +L Q+L NLLSNA+KFTSEGHI
Sbjct: 584 EQQLAAFAPIAKAKGLPLFVE-IDASVEQ--RMRGDPTRLAQVLGNLLSNAIKFTSEGHI 640
Query: 511 SVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFE 570
+ R V P A G P E
Sbjct: 641 AARVAV-WPDARGVP----------------------------------------EVELS 659
Query: 571 VDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENG 626
V+DTG GI +R +F+ + QV GGTGLGL + LV MGG + + +
Sbjct: 660 VEDTGIGIEPTQRARLFKPFSQVDASITRRYGGTGLGLALCDRLVTAMGGTLSV--ESTP 717
Query: 627 ERGTCFRFNVFL 638
+ G+ F ++ L
Sbjct: 718 QVGSVFSVHLPL 729
>gi|428213858|ref|YP_007087002.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002239|gb|AFY83082.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1437
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 151/289 (52%), Gaps = 30/289 (10%)
Query: 370 KSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSI 426
KS A SH+IR A+ G+TGL+ ++ E + + + LL ++N I
Sbjct: 682 KSEFLATMSHEIRTPMNAVIGMTGLL----LDTDLNPEQRDFVETVRASGDALLTIINDI 737
Query: 427 LDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPSDGSVLKFSKVK 484
LD SK+E+GK+ L ++ F++ +ED +DL A KGVE+ +++PS + +
Sbjct: 738 LDFSKIESGKLDLEQQPFNLRSCIEDSLDLLASRAAEKGVELAYLIEPSTPEM-----II 792
Query: 485 GDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYK 544
GD +++QIL NLLSNAVKFT +G + V ++ ++ + G + + S +
Sbjct: 793 GDVTRVRQILVNLLSNAVKFTEKGEVVV--------SVSASAIPPQQAGGIGTDSLILKD 844
Query: 545 NKKARGDL-EAVNAAQRDENAM-EFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----G 598
+ G L + +N N + + F V DTG GIP E+ +F+++ QV G
Sbjct: 845 QETTNGHLHKDLNPDSSAGNPLCQIQFTVSDTGIGIPPERMNRLFKSFSQVDSSTTREYG 904
Query: 599 GTGLGLGIVQSLVRLMGGDIEIVDKE--NGERGTCFRFNVFLAIREASA 645
GTGLGL I + L LMGG + +V E G+ F++ + +++E S+
Sbjct: 905 GTGLGLAISKRLSELMGGRMWVVSGEGVGGDPDPAFQWPIASSVQEQSS 953
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 18/137 (13%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
QKPLR IL+A+D ++ ++VA L LG + NG LQ L+ Q
Sbjct: 1150 QKPLR---ILLAEDHLVNQKVALQILHRLGYRADVAGNGIEVLQ----ALDRQH------ 1196
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV-HIP-IIALTAHISGEEADKTIEAGM 1110
YD +LMD MP M+G ATR+I ++ ++ H P IIA+TA+ + + ++AGM
Sbjct: 1197 ---YDVVLMDVHMPEMDGLAATRQICQDALDGRLSHRPRIIAMTANAMQGDRELCLDAGM 1253
Query: 1111 DVHLGKPLNRDHLMEAI 1127
D ++ KP+ L+EA+
Sbjct: 1254 DDYISKPIRMPELVEAL 1270
>gi|387904341|ref|YP_006334679.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. KJ006]
gi|387579233|gb|AFJ87948.1| Periplasmic sensor hybrid histidine kinase [Burkholderia sp. KJ006]
Length = 1021
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 142/294 (48%), Gaps = 57/294 (19%)
Query: 332 MLTFVFKSARAARKEMHLCASLIKQME-ATQQAERKSMNKSLAFANASHDIRAALAGITG 390
+L VF A R+ L++Q+E A + A+ + KS A SH+IR L I G
Sbjct: 472 VLIAVFTDTTAQRR-------LVQQLEEAVRAADSANAAKSSFLAATSHEIRTPLNVILG 524
Query: 391 LIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELL 450
+EL A S+ ++ +R + A LL +++ ILD SK+EAG M + +F++ ++
Sbjct: 525 NLELLERTALDASQ-QSRVRTLRASAEGLLAIVSDILDFSKIEAGAMSVESIEFELIAVI 583
Query: 451 EDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHI 510
E + F P+A KG+ + ++ D SV + +++GD +L Q+L NLLSNA+KFTSEGHI
Sbjct: 584 EQQLAAFAPIAKAKGLPLFVE-IDASVEQ--RMRGDPTRLAQVLGNLLSNAIKFTSEGHI 640
Query: 511 SVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFE 570
+ R V P A G P E
Sbjct: 641 AARVAV-WPDARGVP----------------------------------------EVELS 659
Query: 571 VDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEI 620
V+DTG GI +R +F+ + QV GGTGLGL + LV MGG + +
Sbjct: 660 VEDTGIGIEPTQRARLFKPFSQVDASITRRYGGTGLGLALCDRLVTAMGGTLSV 713
>gi|449299347|gb|EMC95361.1| hypothetical protein BAUCODRAFT_72144 [Baudoinia compniacensis UAMH
10762]
Length = 1362
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 140/293 (47%), Gaps = 60/293 (20%)
Query: 346 EMHLCASLIKQ--------MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYV 397
E+H A +K M + A S KS AN SH+IR +AG+ G+ E+ +
Sbjct: 713 ELHQAAEEVKMRERENSRLMAQSVAAREASKMKSQFLANMSHEIRTPIAGVIGMAEIL-L 771
Query: 398 EAGPGS---ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVV 454
+ G E + + AN LL ++N ILD SKVE+G++ + E FD+ ++ DV
Sbjct: 772 DDDSGQLTKEQKECAENIQRSANGLLTVINDILDFSKVESGRLDIEEVQFDLSVVIRDVN 831
Query: 455 DLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRA 514
+ A RKG+ + D D LK KV GD +L+Q+++NLL+N++KFTSEG +++R
Sbjct: 832 KMLGFAAERKGLRYIDDIQD---LKSWKVMGDPGRLRQVMTNLLTNSIKFTSEGSVTMRV 888
Query: 515 CVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDT 574
++ +A +E F V+DT
Sbjct: 889 WPERETA-----------------------------------------ETVEVHFLVEDT 907
Query: 575 GKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDK 623
G GI +E R+ +F+ + Q GGTGLGL I ++LV LM G I + K
Sbjct: 908 GIGIEEEVRQKLFKPFSQADSSTARRFGGTGLGLTISKNLVELMHGKISLDSK 960
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 20/149 (13%)
Query: 979 QTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV 1038
Q + EE ERS+ Q ILV +D+ + +++A ++ LG V+A NG+ AL +
Sbjct: 1043 QPALSEE--ERSKTQ-------ILVVEDNPINQQIALKTIKKLGFPVKAVWNGQEALDYL 1093
Query: 1039 RSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEE---KRNQVH-IPIIALT 1094
+ D ++ P D ILMD +MPIM+GY AT IR +V PI+A+T
Sbjct: 1094 QQ--PDSKENPRP-----DIILMDVQMPIMDGYRATYTIRNAAPFVSNPEVQSTPIVAMT 1146
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHL 1123
A + +K AGMD +L KP+ + +L
Sbjct: 1147 ASAIQGDREKCQMAGMDDYLSKPVKKPNL 1175
>gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1255
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 156/333 (46%), Gaps = 70/333 (21%)
Query: 356 QMEATQQ-AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
Q++A + AE S KS A+ SH+IR + GI G+ EL G+ L+ R+
Sbjct: 582 QLQAARDVAEAASQAKSQFMASMSHEIRTPMNGILGMTELLL-----GTRLDDRQRRFAQ 636
Query: 415 CA----NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+LL ++N +LD SK+EAG+++L DF++ L+ED +DL P A KG+E+
Sbjct: 637 AVYRSGENLLEIINDVLDFSKIEAGRLELAPTDFNLRTLIEDTLDLLAPRAHEKGLELSF 696
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRA-CVKKPSAIGNPSLSS 529
+ G V + V D ++L+Q+L+NL++NAVKFT G ++V + +P A G P++
Sbjct: 697 RET-GDV--PANVLADPLRLRQVLTNLVANAVKFTEHGEVTVDLRFLPRPRA-GAPAM-- 750
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
F V DTG G+ E +F
Sbjct: 751 -------------------------------------LEFRVRDTGIGMAAELLPRLFTA 773
Query: 590 YVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
+ Q G GGTGLGL I + LV LMGG I++V + G+ FRF + E +
Sbjct: 774 FTQAHGGMARRYGGTGLGLAISRQLVELMGGQIDVVSQPG--VGSEFRFTMTF---EPGS 828
Query: 646 NDNNTQGE-------KELAGGDSAAGDTQLQHM 671
++ GE + L D A T L H+
Sbjct: 829 GRDSEAGELTALPQARVLVVEDHATNRTVLDHL 861
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEK-----RNQVHIPIIALTAHISGEEADKTIEAG 1109
P D +LMD +MP M+G EA IR E R ++P++A+TA+ + ++ + G
Sbjct: 1022 PVDLVLMDIQMPGMDGIEALHWIRRGESSRFKLRTPANLPVVAVTANALDGDEERFLGFG 1081
Query: 1110 MDVHLGKPLNRDHLM 1124
D +L KP + L+
Sbjct: 1082 FDAYLSKPYRQSQLL 1096
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV +D R V + L G +V +G+AAL+L+R+ DQ D +D
Sbjct: 844 RVLVVEDHATNRTVLDHLLSAWGLSVTLAVDGQAALELLRNRPADQPD--------FDIA 895
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+D MP ++G + +R E ++ L++ + ++A +AG + KP+
Sbjct: 896 LVDWRMPRLDGIGFAKALRAEGLAPGTQ--LVMLSSASAPDDARLAQDAGFVRFIHKPVR 953
Query: 1120 RDHLMEAI 1127
+ L +AI
Sbjct: 954 KAELRQAI 961
>gi|190148357|gb|ACE63261.1| histidine kinase 3 [Betula pendula]
Length = 1053
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 192/405 (47%), Gaps = 49/405 (12%)
Query: 320 LLIVMTVGVLISMLT--FVFKSA--RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFA 375
L I ++G+L+ L ++F + R A+ E C K E +QAE + KS A
Sbjct: 394 LAITTSIGILVIALLVGYIFHATVNRIAKVEDD-CQ---KMTELKKQAEAADVAKSQFLA 449
Query: 376 NASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND----LLGLLNSILDTSK 431
SH+IR + G+ G++++ ++L+ + A D L+ L+N +LD +K
Sbjct: 450 TVSHEIRTPMNGVLGMLDMLM-----DTDLDVTQQDYVRTAQDSGKALVSLINEVLDQAK 504
Query: 432 VEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLK 491
+E+G+++L FD+ +L+DV+ LF + GVE+ + SD + GD + +
Sbjct: 505 IESGRLELEAVQFDLRAILDDVLSLFSGKSPGNGVELAVYISDQVP---EMLIGDAGRFR 561
Query: 492 QILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL---SSSRHGFLQSISCLFYKNKKA 548
QI++NL+ N++KFT +GHI V + + IG+ + SSS + ++S ++K+
Sbjct: 562 QIITNLMGNSIKFTEKGHIFVTVHLVE-EVIGSIEVETESSSNN----TLSGFPVADRKS 616
Query: 549 RGD--------LEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV----KEG 596
D + + + V+DTG GIP+E + VF ++QV
Sbjct: 617 SWDGFRTFSQEGSTCPLSSSSSDLINLIVSVEDTGVGIPREAQSRVFTPFMQVGPSISRT 676
Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKEL 656
GGTG+GL I + LV LM G+I V N G+ F F AS++ N + +
Sbjct: 677 HGGTGIGLSISKCLVGLMKGEIGFVSIPN--TGSTFTFTAVFT--NASSHPNEYKSLQ-- 730
Query: 657 AGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHE 701
S + ++ Q M V P P +R R +I G R E
Sbjct: 731 INNQSKSTSSEFQGMTALVVDPRP---VRAKVSRYHIQRLGIRVE 772
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 30/150 (20%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G+KIL+ DD+ + RVA L+ GA V E+G+ A+ L++ PH
Sbjct: 890 LLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESGKKAISLLK----------PPH--H 937
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEE-------KRNQV-----------HIPIIALTAHI 1097
+D MD +MP ++G+EATR+IR+ E +R +V H+PI+A+TA +
Sbjct: 938 FDACFMDIQMPEIDGFEATRRIRDMEHNINNSIQRGEVSVEGPQTISNWHVPILAMTADV 997
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+++I+ GMD ++ KP L +
Sbjct: 998 IQATHEESIKCGMDGYVSKPFEAQQLYREV 1027
>gi|192361677|ref|YP_001982922.1| putative sensor/response hybrid [Cellvibrio japonicus Ueda107]
gi|190687842|gb|ACE85520.1| probable sensor/response hybrid [Cellvibrio japonicus Ueda107]
Length = 916
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 141/311 (45%), Gaps = 68/311 (21%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL-------- 409
+AT AE S KS A SH+IR L GI G+ L LET L
Sbjct: 246 QATASAEAASQAKSQFLAVMSHEIRTPLNGILGMTNLL---------LETELTPKQKRFA 296
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
R DLL ++N ILD SKVEAGK++L F + L+ED+ + + P+A KG+E++
Sbjct: 297 RVARRSGEDLLLIINDILDFSKVEAGKLELEIHPFQLNLLVEDLAERYAPIAHAKGLELL 356
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
+ + L +GD +L Q+L+NLLSNA+KFT G +++
Sbjct: 357 CN----TPLPPLSAEGDAARLAQVLTNLLSNAIKFTERGEVTLE---------------- 396
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
V R++N + F V DTG GI E+ + +F
Sbjct: 397 -------------------------VKLLLREDNLLHLHFGVRDTGIGIRVEQAERLFNA 431
Query: 590 YVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
+ Q GGTGLGL I Q LV LMGG I + + E G +G+ F F + L +
Sbjct: 432 FTQADSSMTRRYGGTGLGLAISQCLVELMGGHIAL-ESEPG-KGSYFYFELRLPAVADTR 489
Query: 646 NDNNTQGEKEL 656
N +G EL
Sbjct: 490 NLQVMEGFSEL 500
Score = 71.6 bits (174), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 14/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+L+A+D+ + + VA L+ LG NG+ A ++ +D +
Sbjct: 648 KVLLAEDNPVNQEVASAMLQTLGINARLAHNGQEAFTRLQEE-------------SFDLV 694
Query: 1060 LMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMDC+MPIM+G+EAT + R E+++ +P+IALTA+ + ++ +E GM +L KP
Sbjct: 695 LMDCQMPIMDGFEATARWRRYEQEQGLTPLPVIALTANAIVGDRERCLERGMSDYLSKPF 754
Query: 1119 NRDHLMEAI 1127
+ + L + +
Sbjct: 755 STEQLYDVL 763
>gi|418754479|ref|ZP_13310705.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
MOR084]
gi|409965199|gb|EKO33070.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
MOR084]
Length = 821
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + ++ ++V A
Sbjct: 424 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVKILSVSA 482
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L +E F + +L+++ DL +P+A +K + + L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRL---EGK 539
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD+++L+QIL NL N +KFT+ G + +
Sbjct: 540 FDIQEYVYGDQLRLRQILWNLTGNGIKFTNHGEVVL------------------------ 575
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+V+ +N + F V D+G GIP EK+K VF+ + Q
Sbjct: 576 -----------------SVSQENISKNNISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTS 618
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG + + KE G+ F F + I S + +
Sbjct: 619 TARKFGGSGLGLSITKQLVELQGGTLNLESKEG--FGSKFTFAITYDIPSESEIEKILEA 676
Query: 653 EK 654
EK
Sbjct: 677 EK 678
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + G KILVA+D+ + E L+ LG NG ++ +
Sbjct: 680 KDLESAYSNATSNGMKILVAEDNETNCLLIERALKKLGYDPVVVRNGREVIEKM------ 733
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
Q D +D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 734 QLDF-------FDLILMDIHMPEVDGIEATKWIRSQKQNAEFPI-IIALTADVIESNKEI 785
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ L KPL+ L +++ +
Sbjct: 786 YISKGMNDCLTKPLDLPLLKKSLDF 810
>gi|410449547|ref|ZP_11303602.1| 7TM diverse intracellular signaling [Leptospira sp. Fiocruz LV3954]
gi|410016772|gb|EKO78849.1| 7TM diverse intracellular signaling [Leptospira sp. Fiocruz LV3954]
Length = 821
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + ++ ++V A
Sbjct: 424 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVKILSVSA 482
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L +E F + +L+++ DL +P+A +K + + L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRL---EGK 539
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD+++L+QIL NL N +KFT+ G + +
Sbjct: 540 FDIQEYVYGDQLRLRQILWNLTGNGIKFTNHGEVVL------------------------ 575
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+V+ +N + F V D+G GIP EK+K VF+ + Q
Sbjct: 576 -----------------SVSQENISKNNISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTS 618
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG + + KE G+ F F + I S + +
Sbjct: 619 TARKFGGSGLGLSITKQLVELQGGTLNLESKEGF--GSKFTFAITYDIPSESEIERILEA 676
Query: 653 EK 654
EK
Sbjct: 677 EK 678
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + G KILVA+D+ + E L+ LG NG ++ +
Sbjct: 680 KDLESAYSNATSNGMKILVAEDNETNCLLIERALKKLGYDPVVVRNGREVIEKM------ 733
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
Q D +D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 734 QLDF-------FDLILMDIHMPEVDGIEATKWIRSQKQNAEFPI-IIALTADVIESNKEI 785
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ L KPL+ L +++ +
Sbjct: 786 YISKGMNDCLTKPLDLPLLKKSLDF 810
>gi|170293890|gb|ACB13025.1| putative histidine kinase sensor/regulator [Hydrogenophaga sp.
PL2G6]
Length = 439
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 137/286 (47%), Gaps = 52/286 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE + KS A SH+IR + GI G+ +L +E L +
Sbjct: 45 ALDRAEASTRAKSEFLAMMSHEIRTPMNGILGMAQLLETTT-LDTEQSDYLDAIRSSGET 103
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL LLN ILD SK+EAG + L +DFD+ E + + L+ P+A +G + LD + + L
Sbjct: 104 LLVLLNDILDFSKIEAGYLDLERQDFDLQEAIFSTLTLYRPMA--EGKSLALDHTFAAGL 161
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+ V+GDR +L+Q+LSNLL+NA+KFTSEG + V V++ +
Sbjct: 162 P-TYVRGDRTRLRQVLSNLLANAIKFTSEGRVHVDVSVRRLA------------------ 202
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
DL ++ A V+DTG GIP + +F + QV
Sbjct: 203 ------------DLLMLDVA------------VEDTGIGIPHNRLDQLFRAFTQVDSSTT 238
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I L M GDI + + +G+ FRF+V L +
Sbjct: 239 RRYGGTGLGLAISARLCAAMDGDISVSSRVG--KGSIFRFSVALEL 282
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+++LV DD + R +A L LG E+ GE A+ V +G D
Sbjct: 304 RRVLVVDDDRINRALALAMLDKLGFAAESATCGEDAVTRVSAG-------------DVDV 350
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+LMD +MP M+G + T IR + R IIALTA+ + + + AGMD + KP
Sbjct: 351 VLMDLQMPGMDGVQTTHFIRGLDIRQPY---IIALTANAYESDRQRCLAAGMDDFMAKPF 407
>gi|120601868|ref|YP_966268.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
gi|120562097|gb|ABM27841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
Length = 1001
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 141/293 (48%), Gaps = 42/293 (14%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE-LETNLRQMNVCANDL 419
Q+AE S KS+ AN SH+IR L I GL EL E P S+ + NLR + A L
Sbjct: 468 QRAEEASRAKSVFLANMSHEIRTPLNAIIGLTELTLQE--PISQGVGENLRGVLHSAEAL 525
Query: 420 LGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLK 479
L ++N +LD S+VE+G++ L +F L VV L VA RKG++ L +
Sbjct: 526 LAVVNDLLDLSRVESGRLHLESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVP-- 583
Query: 480 FSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSIS 539
V GD +L+Q+L NL+ NA+KFT EG +S+ P + S+
Sbjct: 584 -PTVTGDPARLRQVLLNLVGNALKFTDEGGVSLTV---------TPCICST--------- 624
Query: 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE-- 597
D + F V DTG GIP +++ +FE++VQ E
Sbjct: 625 -----------DTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESFVQADESTAR 673
Query: 598 --GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
GGTGLGL I + LV +MGG +E+ + +G+ F +V A E +A D
Sbjct: 674 RFGGTGLGLAISRRLVEMMGGRLEL--RSEPGKGSEFWCDVPFA-SEGAARDG 723
>gi|89094968|ref|ZP_01167898.1| serine/threonine kinase with two-component sensor domain
[Neptuniibacter caesariensis]
gi|89080752|gb|EAR59994.1| serine/threonine kinase with two-component sensor domain
[Oceanospirillum sp. MED92]
Length = 2109
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 142/287 (49%), Gaps = 52/287 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A +AE ++ KS+ A SH+IR + GI G+ +L + SE + +
Sbjct: 1606 QARHEAEAENEAKSMFLATMSHEIRTPMNGILGMAQLM-KQGQLNSEQNEQIDTIYNAGQ 1664
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL +LN+ILD SK+E+G+++L E+ F + ++++++ +LF PVA K +++V P+
Sbjct: 1665 TLLSILNNILDYSKIESGQLELEEKPFLIQDVMDEIYNLFKPVAQEKSLQIV--PNIERT 1722
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L V GD L QIL NL SNA+KFT +G+I + +C P
Sbjct: 1723 L--PAVSGDPRVLSQILMNLCSNALKFTHQGYIRI-SCEGLPDT---------------- 1763
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
++ ++ F ++DTG GIP++ + +F+++ Q +
Sbjct: 1764 ------------------------QDKLKTRFTIEDTGIGIPEKAQSRIFQHFTQADSSI 1799
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I + ++ + G+I E E+GT F F + I
Sbjct: 1800 TRRYGGTGLGLAITRQIIERLNGEIGFESTE--EQGTTFWFELSFPI 1844
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
KP IL+ +D+ + + V + L G V ++G AL S ND
Sbjct: 1859 KPSTCLDILLVEDTPVNQEVTKGLLESDGHKVSIADDGYTAL----SMHNDH-------- 1906
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
YD +LMD +P M+G E TR++RE + + I IIALTA ++ E +++GM+
Sbjct: 1907 -DYDLVLMDIHLPDMDGMETTRRMREHPQEQKSAIRIIALTASVTPNEVQNYLDSGMNGV 1965
Query: 1114 LGKPLNRDHL 1123
L KP+ L
Sbjct: 1966 LAKPIQHADL 1975
>gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|440708940|ref|ZP_20889600.1| hypothetical protein VC4260B_03450 [Vibrio cholerae 4260B]
gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae]
gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4]
gi|439975681|gb|ELP51793.1| hypothetical protein VC4260B_03450 [Vibrio cholerae 4260B]
Length = 1268
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 154/331 (46%), Gaps = 66/331 (19%)
Query: 327 GVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALA 386
G L L+ F + + E L +A +QAE + KS AN SH+IR +
Sbjct: 501 GQLAGFLSIAFDLTKQLKYEAELA-------QAKEQAESANKAKSEFLANMSHEIRTPMN 553
Query: 387 GITGLIELCYVEAGPGSELETN----LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEE 442
G+ GL++L S L+ + + A LL LLN ILD SK+EAGK++L
Sbjct: 554 GVLGLLQLV-----ANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPH 608
Query: 443 DFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAV 502
F + +L++D+ +F A +KG+EV+ D + + GD ++KQ+L NL+ NA+
Sbjct: 609 PFSLTDLMQDIGLVFSSSAEQKGLEVLYDVTADVP---EHLLGDSFRIKQVLINLVGNAI 665
Query: 503 KFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562
KFT +G I + +I + SL E
Sbjct: 666 KFTDKGEILI--------SIRSQSLP---------------------------------E 684
Query: 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDI 618
+ +F + DTG GI E++ +F + Q + GGTGLGL I + LV LMGG+I
Sbjct: 685 GEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEI 744
Query: 619 EIVDKENGERGTCFRFNVFLAIREASANDNN 649
V+ E G G+ F FNV + E A N+
Sbjct: 745 G-VESEFG-CGSTFSFNVVVRNAEKRAIQNS 773
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 13/137 (9%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
PL+G +L+ +D++ + VA L+ LGAT++ +GE AL+++ S A H
Sbjct: 925 PLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEMLES--------TAEH-- 974
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
+D +LMD +MP M+GY+ TR+IR + R+Q+ +PIIA+TAH ++ + AGM H+
Sbjct: 975 -FDMVLMDIQMPGMDGYQTTREIR-KLPRHQL-LPIIAITAHAMSDDIAACLAAGMQDHI 1031
Query: 1115 GKPLNRDHLMEAIKYLH 1131
KP + + L I H
Sbjct: 1032 AKPFDLNELTTKILSHH 1048
>gi|453085745|gb|EMF13788.1| hypothetical protein SEPMUDRAFT_84970 [Mycosphaerella populorum
SO2202]
Length = 1488
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 156/318 (49%), Gaps = 60/318 (18%)
Query: 326 VGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAAL 385
VGV + +T + K+A + A L+ Q A ++A S KS AN SH+IR +
Sbjct: 811 VGVSMD-VTELKKAADEVQARDRENARLMAQSVAAKEA---SKMKSQFLANMSHEIRTPI 866
Query: 386 AGITGLIELCYVEAGPGS-ELETNLRQ----MNVCANDLLGLLNSILDTSKVEAGKMQLI 440
AG+ G+ EL E S +L R+ + AN LL ++N ILD SKVE+G++ +
Sbjct: 867 AGVIGMSELLLDEDDSASGKLTKEQRECAENIQRSANGLLTVINDILDFSKVESGRLDIE 926
Query: 441 EEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSN 500
E FD+ ++ DV + A RKG++ + D L KV GD +L+Q+++NLL+N
Sbjct: 927 EVQFDLSVVISDVNKMLSFAAERKGLKYI---DDIQQLSSWKVMGDPGRLRQVMTNLLTN 983
Query: 501 AVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQR 560
++KFTS+G +++R AQR
Sbjct: 984 SIKFTSDGSVTMRV------------------------------------------KAQR 1001
Query: 561 DEN-AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMG 615
+ N +E F V+DTG GI +E R+ +F+ + Q GGTGLGL I ++LV LM
Sbjct: 1002 ETNDTVEVHFTVEDTGIGIEEEVRQRLFKPFSQADSSTARRFGGTGLGLTISKNLVELMR 1061
Query: 616 GDIEIVDKEN-GERGTCF 632
G+I + K G R T +
Sbjct: 1062 GEIFLESKLGVGTRATFW 1079
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R ++LV +D+ + +++A ++ LG V A NG+ AL+ + S +P
Sbjct: 1162 RNTQVLVVEDNPVNQQIALKTIKKLGFPVRAVWNGQEALEYLSSP--------SPERPRP 1213
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQ----VHIPIIALTAHISGEEADKTIEAGMDV 1112
ILMD +MPIM+GY AT IR ++ Q PIIA+TA + +K AGMD
Sbjct: 1214 QVILMDVQMPIMDGYRATWTIRNDKAFVQNADVQSAPIIAMTASAIQGDREKCQAAGMDD 1273
Query: 1113 HLGKPLNRDHL 1123
+L KP+ + L
Sbjct: 1274 YLAKPVKKPML 1284
>gi|345871181|ref|ZP_08823129.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343921015|gb|EGV31742.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1128
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 174/354 (49%), Gaps = 65/354 (18%)
Query: 293 VKSVYALAMPRKGLVSLVHRTSKRAL--ILLIVMTVGVLISMLTFVFKSARAARKEMHLC 350
++++Y +A + + R AL IL+I + V +LI+++ +++ A + + L
Sbjct: 313 LRAIYPVA-------TAIQRIRSDALWAILIIDLIVYLLIALIAWLYSRTLALQHQAQLQ 365
Query: 351 ASLIKQME-ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
+L + +E A + A+ + KS AN SH+IR L + GL L + + G E +
Sbjct: 366 LALNQSLERAREAADLANQAKSEFLANMSHEIRTPLNAVLGLSHLLGLGSM-GHEQREYV 424
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK--GVE 467
++ LLG+++ ILD SK+EAG++ + F++ +L ++ V + A RK ++
Sbjct: 425 AKIQSAGKALLGIVDDILDLSKIEAGELSIECVPFNIVDLCDESVRIVSGAAERKNLSLK 484
Query: 468 VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
+ +DP +L GD ++L+QIL NLL+NAVKFT G I +RA + S
Sbjct: 485 LTMDPKIPILLL-----GDPIRLRQILLNLLNNAVKFTRSGGIELRATI---------SD 530
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
HGFL CL EV DTG GIP E ++ +F
Sbjct: 531 LCEHHGFL----CL----------------------------EVADTGIGIPDELQEMLF 558
Query: 588 ENYVQVKEGE-----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+VQV +G GGTGLGL IV+ + LMGG +E+ +E C R V
Sbjct: 559 RPFVQV-DGSITRRFGGTGLGLTIVRQITGLMGGTVEVESQEGVGSTFCIRVPV 611
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 13/140 (9%)
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
RS + L G K+L+ DDS + VA L GA+V C NG A+ + L+D R
Sbjct: 769 RSAGIQWLAGVKLLLVDDSELNVDVARRILERQGASVWGCTNGLEAV----NWLSDPRH- 823
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA 1108
D +LMD +MP+++G A ++IR E + + +PIIALTA E + ++A
Sbjct: 824 ------QVDAVLMDVQMPVLDGILAVQRIRRELQLTR--LPIIALTAGALSSERQRALDA 875
Query: 1109 GMDVHLGKPLNRDHLMEAIK 1128
GM+ ++ KP D ++ A++
Sbjct: 876 GMNDYVTKPFEPDQMVRALR 895
>gi|168016518|ref|XP_001760796.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162688156|gb|EDQ74535.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1165
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 153/299 (51%), Gaps = 39/299 (13%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
AE S KS AN SH+IR + GI G+ L +E E +L ++ A+ LL +
Sbjct: 569 AEEASRAKSEFLANMSHEIRTPIHGIIGMASLA-LETDLTDEQREHLETVSQSADCLLHI 627
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N+ILD +K+EAG+++L +F V + + + + A +K +++ + +
Sbjct: 628 VNAILDLAKIEAGRVELERIEFSVFDTVSSTIKMLQVRANQKQLQLSWEIDENVP---EH 684
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACV---------------------KKPSA 521
+ GD +L+Q L NL+ NA+KFT EG +S+ A V ++P+A
Sbjct: 685 LVGDAARLQQCLINLVGNAIKFTHEGSVSLTAKVYTGTGPLERTSSATLKKKSSSREPTA 744
Query: 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAV--NAAQRDENAMEFTFEVDDTGKGIP 579
P + S H + IS +F + G++ +A + ++ + F V DTG GI
Sbjct: 745 AEEPQTNDSHH--VIDISEIFATD----GEISRCSNSATVKKDDRVSLLFAVQDTGIGIS 798
Query: 580 KEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
KEK+K VF+ + Q GGTGLGL IV+ LV++MGG I + + E G +G+ F F
Sbjct: 799 KEKQKEVFKAFSQADSSTTRLYGGTGLGLSIVERLVQMMGGRIWL-ESEPG-KGSTFYF 855
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LRG KIL+A+D+++ ++VA L+ G V+ +G+ L + +RD
Sbjct: 1016 LRGMKILLAEDNIVNQKVACQQLKKFGTEVDVVSDGQQCLDAL------ERDRNG----- 1064
Query: 1056 YDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
YD ILMD +MP+++G +ATRKIRE EEK N H PII LTAH DK + AGMD +
Sbjct: 1065 YDIILMDVQMPVLDGLQATRKIREIEEKHNYPHKPIIGLTAHAIQGYKDKCLSAGMDAYA 1124
Query: 1115 GKPLNRDHLMEAIK 1128
KP L++ I+
Sbjct: 1125 CKPFQVRELIQVIQ 1138
>gi|407784571|ref|ZP_11131720.1| sensor histidine kinase/response regulator [Celeribacter
baekdonensis B30]
gi|407204273|gb|EKE74254.1| sensor histidine kinase/response regulator [Celeribacter
baekdonensis B30]
Length = 727
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 140/287 (48%), Gaps = 50/287 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A +AE + KS AN SH+IR + G+ G+ +L E E + +
Sbjct: 204 KARSKAEAANRAKSAFLANMSHEIRTPMNGMVGMADLL-AETELNEEQILYVETIKSSGE 262
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLGL+N +LD SK+EA K+ L E FD+ ++DV+ L P A +K V++++ D +
Sbjct: 263 ALLGLINDVLDYSKIEASKLSLHPEPFDLERCIQDVLVLLQPNATQKKVDLII---DYDM 319
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ GD +++Q+L+NL+ NAVKFT GH+ VR +G P R
Sbjct: 320 FLPTNFIGDPGRMRQVLTNLVGNAVKFTHSGHVIVR-------VVGLPEEDGKR------ 366
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
QR V+DTG GI + + +F + QV++
Sbjct: 367 ---------------------QR------VHVSVEDTGIGIAPDMIEHIFGEFNQVEDER 399
Query: 598 G----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GTGLGL I + LV+LMGG+I VD E G G+CF F++ + +
Sbjct: 400 NRKFEGTGLGLAITRQLVQLMGGEI-WVDSEEG-VGSCFGFHITMDV 444
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAH-ISGEEADKTIEAGMDVHLG 1115
D I MD MP ++G EATR+IR E H+PI+ALTAH ++G+E D + AG+D ++
Sbjct: 628 DLIFMDISMPEVDGKEATRQIRAFEIDTGAHVPIVALTAHAMAGDEQD-ILAAGLDYYMT 686
Query: 1116 KPLNRDHLMEAI 1127
KPL + +++ I
Sbjct: 687 KPLRKASIIDRI 698
>gi|442609645|ref|ZP_21024381.1| hypothetical protein PALB_13100 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441748889|emb|CCQ10443.1| hypothetical protein PALB_13100 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 1387
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 161/337 (47%), Gaps = 63/337 (18%)
Query: 319 ILLIVMTVGVLISMLTFVFKSARAARK----EMHL-----CASLIKQME----ATQQAER 365
+L+ ++ V V I T + K A +K E+ L SL Q E A ++AE
Sbjct: 800 LLITLLVVSVAIYFRTRLQKVEIARQKQFVHELELQVAEKTVSLTSQAEDLASALKKAEE 859
Query: 366 KSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNS 425
+ KS AN SH+IR + G+ G+++L + SE + AN LL L+N
Sbjct: 860 ATKLKSEFLANMSHEIRTPMNGVLGMLDLLK-SSSLTSEQAHAAEIASSSANSLLTLIND 918
Query: 426 ILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKG 485
ILD SK+EA K++L DFD+ +L+ + A K VE++LD ++ ++ +V
Sbjct: 919 ILDFSKIEADKLELELIDFDLRQLISHLAQSMALTAQNKNVELILDLAE---MEVDEVHS 975
Query: 486 DRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKN 545
D +++Q+L+N+LSNA+KFT G+I + + K S S L Y
Sbjct: 976 DPGRIRQVLTNILSNAIKFTEHGYIKLTVKLTK------------------SDSPLQY-- 1015
Query: 546 KKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTG 601
+F +++D+G GIP EK T+F+ + QV GGTG
Sbjct: 1016 --------------------DFVCQIEDSGIGIPSEKLSTLFDAFSQVDASTTRKYGGTG 1055
Query: 602 LGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
LGL I + L +L+ GD+ + + G+CF + L
Sbjct: 1056 LGLSITKRLCQLLKGDVSVSSQLGS--GSCFEIRLLL 1090
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 11/160 (6%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQK-PLRGKKILVADDSMMLRRVAEINLRHLGATVEACE 1029
GE + + E+ + + Q + ++L+ +D+ + + VA L LG V E
Sbjct: 1231 GEAACALENAEVTTKSEKAEQVNDIDVSNAQVLLVEDNKVNQIVALRILNELGVVVTVAE 1290
Query: 1030 NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH-I 1088
NG ALQ+ LND RD ++ ILMDC+MP+M+GYEAT KIR+ ++ I
Sbjct: 1291 NGVEALQI----LNDARDERR-----FNVILMDCQMPLMDGYEATYKIRDGHAGHEYKTI 1341
Query: 1089 PIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
P+IA+TA+ + K ++AGMD ++ KP++ L E ++
Sbjct: 1342 PVIAMTANAMQGDKQKCLDAGMDDYISKPIDTSLLKEKLR 1381
>gi|348169799|ref|ZP_08876693.1| sensor histidine kinase/response regulator [Saccharopolyspora spinosa
NRRL 18395]
Length = 1321
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 136/289 (47%), Gaps = 60/289 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV--- 414
E +Q + S KS AN SH++R L + L +L +E NL V
Sbjct: 865 ERARQLSQASAYKSEFLANMSHELRTPLNSVLILAKLL------ADNMEGNLTSQQVDLA 918
Query: 415 -----CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE-- 467
DLL L+N +LD SKVEAG+M L+ ED ++ +L + L+ P+A KG++
Sbjct: 919 KTVHQAGTDLLQLINDVLDLSKVEAGQMHLLPEDVELVDLAAHMESLYQPLAADKGLDFR 978
Query: 468 VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
V + PS V+ DR +L+QI+ NLLSNAVKFT +G + +R +PS + + L
Sbjct: 979 VSVAPS-----VPPTVRTDRNRLEQIVRNLLSNAVKFTDKGAVELRVRPAQPSEVHDQGL 1033
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
+R F V DTG GIP +K +F
Sbjct: 1034 RHARR---------------------------------RLAFSVRDTGIGIPADKLSLIF 1060
Query: 588 ENYVQVK----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
E + QV GGTGLGL I + L L+ G+++ VD E G RG+ F
Sbjct: 1061 EAFQQVDGTTVRKYGGTGLGLSISRELTALLSGELQ-VDSEPG-RGSTF 1107
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G+K+LV DD + + L G V +N A L + L Q D+
Sbjct: 1192 GEKVLVVDDDYRSVQAMRLLLEQHGLQVVHADNALAGL----NALQHQGDIM-------- 1239
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+LMD MP M+G R IRE + + IIA+TA + + +I AG + KP
Sbjct: 1240 IVLMDVMMPEMDGNATIRIIREMPRYR--DLTIIAITAKAMKGDREASIAAGATECMSKP 1297
Query: 1118 LNRDHLME 1125
++ + L++
Sbjct: 1298 VDVNKLLD 1305
>gi|345302947|ref|YP_004824849.1| histidine kinase [Rhodothermus marinus SG0.5JP17-172]
gi|345112180|gb|AEN73012.1| histidine kinase [Rhodothermus marinus SG0.5JP17-172]
Length = 1346
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 145/302 (48%), Gaps = 54/302 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++ R S KS AN SH+IR + G+ G+ EL +E E + ++
Sbjct: 805 ANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELL-LEMDLTKEQRECVEIIHRSGET 863
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL +LN ILD SK+EAG+++L DF++ E +EDV+ LF P A K +E++ + ++
Sbjct: 864 LLTILNDILDFSKIEAGRLELENIDFNLQETIEDVITLFAPRAAAKQLELICFVEERAL- 922
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+V+GD +L+Q+LSNL+ NA+KFT G + V A
Sbjct: 923 ---EVQGDPHRLRQVLSNLIGNAIKFTERGEVVVEA------------------------ 955
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK---- 594
+LE + DE + V DTG GIP ++ +F+ + Q+
Sbjct: 956 ------------ELERL-----DERRAHWRISVRDTGIGIPPDRLAHLFQPFTQLDGSTT 998
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
GGTGLGL I + LV +MGG I V+ E G+ T F V + R +S N +
Sbjct: 999 RRYGGTGLGLAISKQLVEMMGGTIG-VESEVGKGST---FTVRIPFRLSSQRKLNGDERR 1054
Query: 655 EL 656
L
Sbjct: 1055 AL 1056
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 13/134 (9%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
S +P +L+A+D+ + ++VA +L LG T + +G+ A++ G
Sbjct: 1213 SSTPRPAGRGHLLLAEDNPVNQKVALYHLERLGYTCDVVGDGKQAVEAALRG-------- 1264
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
YD ILMD MP+M+G+EAT +IRE E H PIIA+TA+ E ++ +EAG
Sbjct: 1265 -----GYDAILMDVHMPVMDGFEATAQIREREAELGRHTPIIAMTANALRGERERCLEAG 1319
Query: 1110 MDVHLGKPLNRDHL 1123
MD ++ KP +D L
Sbjct: 1320 MDDYIAKPFKKDEL 1333
>gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
Length = 930
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 151/314 (48%), Gaps = 54/314 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +QAE S KS AN SH+IR L+GI GL ++ + P E+ +L + +
Sbjct: 428 ARKQAEAASRAKSGFLANMSHEIRTPLSGIIGLTQMTLSQT-PRPEVREHLELILDSSRS 486
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N ILD SK+EAGKM+ DFD+ E+L+ + FH + +KG+ + L +
Sbjct: 487 LLAIVNDILDFSKIEAGKMEFSPVDFDLREILDRTMKPFHFSSRQKGLRLSLRIAQELP- 545
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+ GD ++ Q++ NL+ NA+KFT +G ++V + +P G+P L +
Sbjct: 546 --DILHGDPDRIMQVVRNLVGNALKFTDKGEVAVEFRLLRP---GDPML----------V 590
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
C V DTG GIP+E+ +F+ + Q++
Sbjct: 591 EC-----------------------------SVRDTGIGIPEERLPELFQVFSQLESSRT 621
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
GGTGLGL I + LV +MGG I + + +G+ F F V ++R A + G +
Sbjct: 622 KRYGGTGLGLAISRRLVEMMGGTIGVRSRPG--QGSVFSFTV--SLRPAQEECSEAGGSR 677
Query: 655 ELAGGDSAAGDTQL 668
A AG T L
Sbjct: 678 SEAPSGGFAGLTVL 691
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 15/157 (9%)
Query: 974 SSRYKQTEIEEEDGERSQAQKP-LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGE 1032
S R Q E E G RS+A G +L+A+D+ + R + L G V +G
Sbjct: 662 SLRPAQEECSEAGGSRSEAPSGGFAGLTVLLAEDNQVNRLFLKHFLSEAGCEVRLAGSGG 721
Query: 1033 AALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPII 1091
AL +++G P D +LMD +MP M+G EAT++IR E +P++
Sbjct: 722 EALAQLQNG-------------PVDLVLMDIQMPEMDGTEATKRIRAGEAGEANKGLPVV 768
Query: 1092 ALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
ALTA+ + ++ + AG+D ++ KP++ D L ++
Sbjct: 769 ALTAYSMKGDRERFLSAGLDDYVSKPVDVDELFMVMR 805
>gi|285017115|ref|YP_003374826.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas albilineans GPE PC73]
gi|283472333|emb|CBA14839.1| hypothetical two-component system sensor-response regulator hybrid
protein [Xanthomonas albilineans GPE PC73]
Length = 838
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 150/306 (49%), Gaps = 60/306 (19%)
Query: 342 AARKEMHLCASLIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
A ++++HL L +++ +A Q AE + K A SH+IR L GI ++EL
Sbjct: 82 ALQRDVHLRERLERELVQAKQAAEAAVLAKGEFLATMSHEIRTPLNGIIPMLELIA---- 137
Query: 401 PGSELETNLRQMNVCAN----DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDL 456
S L+ + R+M AN LL +++ ILD SK+EA +++L F++ ELL+DV+ L
Sbjct: 138 -HSPLDLDQREMLRAANTSSLQLLRIVDDILDYSKLEANRLELETTAFNLRELLDDVLQL 196
Query: 457 FHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACV 516
A KG+ + L L V+GD V+L+Q+LSNLL NA+KFT+ G I + V
Sbjct: 197 MQRAAEAKGLRMALQLDRAVRL---PVRGDPVRLRQVLSNLLGNAIKFTARGGIDLH--V 251
Query: 517 KKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGK 576
++ +G S ++H FEV DTG
Sbjct: 252 RR---LGE---SPAQH---------------------------------VLRFEVRDTGI 272
Query: 577 GIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GI E+++ +F+ + Q GGTGLGL I + +V LMGG I + K + G F
Sbjct: 273 GISAERQERLFQAFTQADASTTRLYGGTGLGLAICKRIVELMGGRIGLESKLD--HGAIF 330
Query: 633 RFNVFL 638
F + L
Sbjct: 331 WFEIPL 336
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 74/131 (56%), Gaps = 16/131 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAAL-QLVRSGLNDQRDLGAPHILPYDY 1058
++L+ +D+ + VA+ L LG + ENG AAL QL + YD
Sbjct: 533 RLLLVEDNPVNMMVAQRLLEALGYRADTVENGAAALTQLAQQA--------------YDL 578
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKR-NQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+LMDC+MP+++GY ATR+ R+ E Q +PI+A+TA+ + + ++AGMD +L KP
Sbjct: 579 VLMDCQMPVLDGYAATRQWRQSEANATQARLPIVAMTANAMAGDRQRCLDAGMDDYLSKP 638
Query: 1118 LNRDHLMEAIK 1128
+++ L ++
Sbjct: 639 IDQTRLKACLQ 649
>gi|225681939|gb|EEH20223.1| phosphate regulon sensor protein phoR [Paracoccidioides brasiliensis
Pb03]
Length = 1807
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 160/324 (49%), Gaps = 63/324 (19%)
Query: 350 CASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
C + Q ++ ++ +++ F+N SH+IR L GI G I ++L+++
Sbjct: 1242 CTDINDQKLLERKLNKEMESRTNFFSNMSHEIRTPLNGILGAIPHIL-----DTQLDSDQ 1296
Query: 410 RQM----NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
R+M + +N+L L+++ILD SKVEAGKM ++ + F+V ++E+V+D AM KG
Sbjct: 1297 RRMLDIIHNSSNNLSELVDNILDVSKVEAGKMNIVRQVFNVRSVVEEVIDTIGSRAMDKG 1356
Query: 466 VEV-VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN 524
+E+ L S+ + F GDR +++QIL NL+ N+VKFTS G I R
Sbjct: 1357 LELNYLVESNVPKMVF----GDRFRIRQILLNLMGNSVKFTSHGEILTR----------- 1401
Query: 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRK 584
C + + A ++N ++ + FEV DTG+G K K
Sbjct: 1402 ---------------CSIHHDSNA-----SLNGSE-----ILLNFEVVDTGRGFSKADAK 1436
Query: 585 TVFENYVQVKEGEG-----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
+ + + Q+ EG G G+GLGL + + LV + GG + KE G +F+ F+
Sbjct: 1437 RLMQRFSQI-EGNGSQQHTGSGLGLFLSRQLVEMHGGQLTPTSKE----GQGSKFSFFVK 1491
Query: 640 IREASANDNNTQGEKELAGGDSAA 663
+ E S+ Q EL G +AA
Sbjct: 1492 VDEVSSRPPTPQ---ELFKGSNAA 1512
>gi|456876836|gb|EMF91898.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
ST188]
Length = 821
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + ++ ++V A
Sbjct: 424 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVKILSVSA 482
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L +E F + +L+++ DL +P+A +K + + L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRL---EGK 539
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD+++L+QIL NL N +KFT+ G + +
Sbjct: 540 FDIQEYVYGDQLRLRQILWNLTGNGIKFTNHGEVVL------------------------ 575
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+V+ +N + F V D+G GIP EK+K VF+ + Q
Sbjct: 576 -----------------SVSQENISKNNISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTS 618
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG + + KE G+ F F + I S + +
Sbjct: 619 TARKFGGSGLGLSITKQLVELQGGTLNLESKEG--FGSKFTFAITYDIPSESEIERILEA 676
Query: 653 EK 654
EK
Sbjct: 677 EK 678
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + G KILVA+D+ + E L+ LG NG ++ +
Sbjct: 680 KDLESAYSNATSNGMKILVAEDNETNCLLIERALKKLGYDPVVVRNGREVIEKM------ 733
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
Q D +D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 734 QLDF-------FDLILMDIHMPEVDGIEATKWIRSQKQNAEFPI-IIALTADVIESNKEI 785
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ L KPL+ L +++ +
Sbjct: 786 YISKGMNDCLTKPLDLPLLKKSLDF 810
>gi|359684109|ref|ZP_09254110.1| histidine kinase response regulator hybrid protein [Leptospira
santarosai str. 2000030832]
Length = 821
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + ++ ++V A
Sbjct: 424 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVKILSVSA 482
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L +E F + +L+++ DL +P+A +K + + L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRL---EGK 539
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD+++L+QIL NL N +KFT+ G + +
Sbjct: 540 FDIQEYVYGDQLRLRQILWNLTGNGIKFTNHGEVVL------------------------ 575
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+V+ +N + F V D+G GIP EK+K VF+ + Q
Sbjct: 576 -----------------SVSQENISKNNISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTS 618
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG + + KE G+ F F + I S + +
Sbjct: 619 TARKFGGSGLGLSITKQLVELQGGTLNLESKEG--FGSKFTFAITYDIPSESEIEKILEA 676
Query: 653 EK 654
EK
Sbjct: 677 EK 678
Score = 57.0 bits (136), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E + + G KILVA+D+ + E L+ LG NG ++ +
Sbjct: 680 KDLESAYSNATSNGMKILVAEDNETNCLLIERALKKLGYDPVVVRNGREVIEKM------ 733
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
Q D +D ILMD MP ++G EAT+ IR +++ + I IIALTA + +
Sbjct: 734 QLDF-------FDLILMDIHMPEVDGIEATKWIRSQKQNAEFPI-IIALTADVIESNKEI 785
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKY 1129
I GM+ L KPL+ L +++ +
Sbjct: 786 YISKGMNDCLTKPLDLPLLKKSLDF 810
>gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
Length = 958
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 132/267 (49%), Gaps = 54/267 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+AT +A + S KS AN SH++R + I G EL E E +L +
Sbjct: 326 KATAEARQASRMKSEFLANMSHEMRTPMNAILGFTELLLSEE-TNEEKRKHLVTIYRSGE 384
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +LD SK+E+GKMQ+ EE + LL+++V+ + P+A KG+ + D +V
Sbjct: 385 HLLSLINDVLDLSKIESGKMQIYEEIYSPRNLLKELVETYLPMAYSKGLHLAYS-LDNNV 443
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ V GD ++KQIL+NL+SN +KFTS+G+I+++A
Sbjct: 444 PEY--VVGDAFRIKQILTNLVSNGIKFTSQGYITIQAN---------------------- 479
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV---- 593
YK K T+ V+DTG GIP+EK +FE + Q+
Sbjct: 480 -----YKEGK-------------------ITYIVNDTGIGIPEEKLDKIFEPFTQLDRTM 515
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEI 620
GG GLGL I + LV LM G + I
Sbjct: 516 SRKYGGMGLGLAITKKLVDLMNGKLYI 542
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 80/133 (60%), Gaps = 19/133 (14%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K+ILV +D+ + + + L +G V+ NG+ AL+ ++ Y
Sbjct: 697 KEILVVEDNKANQVLIKKMLEKVGFKVDVAGNGKEALEKIKEK-------------TYSL 743
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAH-ISGEEADKTIEAGMDVHLGKP 1117
I+MD +MP+M+GY ATRKIRE+ + +P+IALTAH + G+EA K++EAG D +LGKP
Sbjct: 744 IIMDMQMPVMDGYTATRKIREK----GLKVPVIALTAHTLRGDEA-KSLEAGCDGYLGKP 798
Query: 1118 LNRDHLMEAIKYL 1130
+ + L++AI Y
Sbjct: 799 VKQKELIDAIVYF 811
>gi|411008223|ref|ZP_11384552.1| Tmao reductase sytem sensor tors [Aeromonas aquariorum AAK1]
Length = 936
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 144/290 (49%), Gaps = 54/290 (18%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQMN 413
KQ A +AE+ + KS+ A SH+IR + GI G L +E SE + L +
Sbjct: 436 KQRLARAEAEQANRAKSVFLATMSHEIRTPMNGILG--GLTLLEDTHLSETQQRYLAAIK 493
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-- 471
LL +LN ILD SK+EAG ++ E F + L E+++ LF P A KGV +VL+
Sbjct: 494 QSGESLLEILNDILDYSKIEAGHVEARREPFSLRPLAEELIALFGPRADAKGVTLVLEYA 553
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
PS V V+GD KL+Q+L+NLL NAVKFT EG I++ V P A P
Sbjct: 554 PSLPPV-----VEGDLGKLRQVLANLLGNAVKFTGEGRITL---VVAPLACAGPC----- 600
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
+ C+ F V DTG GIP +++ VFE +
Sbjct: 601 -----AEPCI--------------------------RFVVKDTGPGIPTGEQEAVFEAFR 629
Query: 592 QVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
Q K +GGTGLGL I + LV MGG++ ++ E G+ G F F++ L
Sbjct: 630 QRKRDMGHQGGTGLGLAISRRLVAAMGGEL-MLSSEPGQ-GCEFSFSLPL 677
Score = 48.1 bits (113), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 26/154 (16%)
Query: 988 ERSQAQ-----KPLR---GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR 1039
+RS AQ +P+R ++IL+ +D+ + R VAE L LG V E+G +AL V
Sbjct: 678 QRSAAQLPASAQPVRLGQPREILLVEDNEINRLVAEGMLVRLGHLVTLAEDGRSALARVT 737
Query: 1040 SGLNDQRDLGAPHILPYDYILMDCEMPIMNGY---EATRKIREEEKRNQVHIPIIALTAH 1096
P++ L+D +P M+G E I EEE + +P IA++A
Sbjct: 738 E-------------RPFELALLDINLPDMDGMTLREDLVAISEEE--HGCGLPAIAISAQ 782
Query: 1097 ISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+ E+ + AG +GKP+ L AI L
Sbjct: 783 MYPEDVRACLAAGFADFVGKPVRLAALAAAIDRL 816
>gi|383790917|ref|YP_005475491.1| PAS domain-containing protein [Spirochaeta africana DSM 8902]
gi|383107451|gb|AFG37784.1| PAS domain S-box [Spirochaeta africana DSM 8902]
Length = 792
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 148/309 (47%), Gaps = 54/309 (17%)
Query: 335 FVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIEL 394
FVF + H LI++ E A R + KS AN SH+IR + I G+ EL
Sbjct: 109 FVFAVIDDITTKRHGEQRLIRERE---DALRATKTKSAFLANVSHEIRTPIHTIMGMSEL 165
Query: 395 CYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVV 454
++ E Q+ A+ LL L+N +LD SK+EAGK+ L +FD+ +LED
Sbjct: 166 L-LDTSLDVEQREYAGQIQFSADVLLSLVNDVLDLSKIEAGKLSLEIIEFDLYTVLEDAA 224
Query: 455 DLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRA 514
D+ A +KG+E+++D + V GD ++L+QI+ N LSNA+KFTS G I +RA
Sbjct: 225 DMISLEAHKKGLELIIDIDSRIPI---VVSGDPLRLRQIVVNFLSNALKFTSSGMIVLRA 281
Query: 515 CVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDT 574
+P+ G R D+ + EV+DT
Sbjct: 282 ---RPAGAGE------------------------RRDVVRI--------------EVEDT 300
Query: 575 GKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGT 630
G GIP+++ +F+ + Q+ GGTGLGL I +SLVR+M G I + + G+
Sbjct: 301 GIGIPEKQLPHLFQAFRQIDSSTTRKFGGTGLGLSISKSLVRMMKGRIGVRSRSGD--GS 358
Query: 631 CFRFNVFLA 639
F V A
Sbjct: 359 VFWIEVPFA 367
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 18/122 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+A+D + + + L H G V NG A+++ R P + +
Sbjct: 542 VLLAEDHEVNQELFRTILEHCGLQVVTASNGRDAVEMFR-----------PR--QFAMVF 588
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL-N 1119
MD +MP+MNGY A R+IR + +PI+ +TA+ E +K +AGM+ +L KP +
Sbjct: 589 MDVQMPVMNGYNAARRIRAADP----DVPIVGVTANALQGEREKCRQAGMNDYLPKPFKS 644
Query: 1120 RD 1121
RD
Sbjct: 645 RD 646
>gi|86142612|ref|ZP_01061051.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
gi|85830644|gb|EAQ49102.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
Length = 1175
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 141/292 (48%), Gaps = 53/292 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA ++AE + +KS AN SH+IR L GI G +L ++ + ++ ++ A
Sbjct: 647 VEARKKAEAANRSKSEFLANMSHEIRTPLNGIIGFTDLL-MQTSLAPFQQKYMQTVHNSA 705
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
N L+ L+N ILD SK+EAGK++L EE D+ EL VD+ A +KG+E++L S
Sbjct: 706 NTLMDLINDILDFSKIEAGKLELNEERTDLIELCTQTVDIVKHQAHQKGLEMLLQIS-PD 764
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V +F V+ D ++L+QIL NLL NAVKFT +G +++ A
Sbjct: 765 VKRF--VQADSIRLRQILINLLGNAVKFTDQGEVALTVTASNTIA--------------- 807
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY----VQ 592
EN EF FE+ DTG GI + +F + V
Sbjct: 808 ------------------------QENEAEFKFEIRDTGIGIDPKNINKIFNAFDQEDVS 843
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGT--CFRFNVFLAIRE 642
GG+GLGL I L+ LMG +++ N +GT F F++ L E
Sbjct: 844 TTRKYGGSGLGLTISNRLLNLMGSKLKV----NSVQGTGSTFYFDLKLKTEE 891
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 16/126 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG--ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
KIL+ +D+ + R +A L+ + A + + NGE A++ + P D
Sbjct: 1047 KILIVEDNPVNRFLANSILKKIAPNAKLISAVNGEEAIKKFKKN--------KP-----D 1093
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+ MD +MPI++G EA IRE E+ H PIIALTA E +K + GMD +L KP
Sbjct: 1094 IVFMDIQMPILSGIEAAIAIRELEEV-PAHTPIIALTARALKNEREKCLAIGMDDYLTKP 1152
Query: 1118 LNRDHL 1123
+ D L
Sbjct: 1153 IVLDDL 1158
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGA 1023
LK + G GS+ Y +++ E+ ++ KK+LV DD+ R++ L
Sbjct: 869 LKVNSVQGTGSTFYFDLKLKTEEEPIYKSHNIKEIKKVLVVDDNATNRKILGQMLAVNSI 928
Query: 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKR 1083
C + AL S L +Q D +D ++D MP +NG +IR K
Sbjct: 929 ETVLCTDAIDAL----STLGEQDD--------FDLAIVDFNMPYLNGIGLIEEIRNTHKL 976
Query: 1084 NQVHIPIIALTAHISGEEADKTI-EAGMDVHLGKPLNRDHLMEAIK 1128
N +P+I L + E K+ E G+ ++ KP+ + L E ++
Sbjct: 977 NSEKLPVILLHSATEDELIQKSCKELGVAYNITKPIQINQLYELLE 1022
>gi|411120735|ref|ZP_11393107.1| signal transduction histidine kinase [Oscillatoriales
cyanobacterium JSC-12]
gi|410709404|gb|EKQ66919.1| signal transduction histidine kinase [Oscillatoriales
cyanobacterium JSC-12]
Length = 1060
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 142/293 (48%), Gaps = 33/293 (11%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A AE + KS AN SH++R L I G ++ + + + L +N
Sbjct: 533 QAKDAAEVANRAKSEFLANMSHELRTPLNAILGFTQIMSHDPFLSEQNQNYLNIINRSGQ 592
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +L+ SK+EAG+++L FD+ LE + + A+ K + +V + +
Sbjct: 593 HLLELINDVLELSKIEAGRIRLNSTSFDLHYFLESLEQMLRVKAIDKQLTLVFERATDLP 652
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ D KL+Q+L NLL NA+KFTS+G +++R + I N S S L S
Sbjct: 653 ---QYITTDEGKLRQVLINLLGNAIKFTSQGSVTMRV---QKQEIENSSQVSQN---LCS 703
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
Y NK R FE++DTG GI E + +F+ +VQ K G+
Sbjct: 704 DRSPEYLNKSFR-----------------LYFEIEDTGPGIASEDLQQLFQAFVQTKTGQ 746
Query: 598 G---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
GTGLGL I V+LMGGDI + + +G+ FRF++ I A ND
Sbjct: 747 QANEGTGLGLKISSRFVQLMGGDITV--QSIVGKGSIFRFDILADI--AQYND 795
>gi|374301885|ref|YP_005053524.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332554821|gb|EGJ51865.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 939
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 137/286 (47%), Gaps = 52/286 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A Q+A+ + KS AN SH+IR + GI G+IEL ++ P NL A+
Sbjct: 555 QAKQEADAANKAKSEFLANMSHEIRTPMNGIMGMIELALLK-DPSCPARGNLELAQKSAH 613
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV-VLDPSDGS 476
LL ++N ILD SK+EAGK++L + ++EDVV A RKGV + SD
Sbjct: 614 HLLDIINDILDLSKIEAGKLELKSRPLVLRRIVEDVVGTLSLAASRKGVSMHHYIESDVP 673
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
++ GD ++L+Q+L NL+ NAVKFT EG I V
Sbjct: 674 ----ERLMGDEMRLRQVLMNLVGNAVKFTHEGRILV------------------------ 705
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY----VQ 592
++E V + D + F V DTG GIP+E+ +FE++ ++
Sbjct: 706 --------------NVETV--LRTDGGRICLRFTVSDTGIGIPEERLGDIFESFSQANIE 749
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ GGTGLGL I + LV LMGG++ + + G+ F F
Sbjct: 750 TQTKYGGTGLGLTISKLLVELMGGEVSV--RSTPGHGSSFTFTALF 793
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
A K R +IL+A+D+ + + VA+ L G +V ENG AAL A
Sbjct: 810 AVKAARSLRILLAEDNPINQLVAQELLESRGHSVTVVENGRAALD-------------AL 856
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTAHISGEEADKTIEAGM 1110
+ P+D +LMD MP M G EATR+IR + IPIIALTA+ + ++ + AGM
Sbjct: 857 SLKPFDLVLMDVRMPEMGGEEATRRIRAGDIAGVDSGIPIIALTAYALEGDRERFLAAGM 916
Query: 1111 DVHLGKPLNRDHL 1123
+L KP+ + L
Sbjct: 917 TDYLAKPITLEEL 929
>gi|344344646|ref|ZP_08775507.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
984]
gi|343803810|gb|EGV21715.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
984]
Length = 1400
Score = 122 bits (307), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 133/274 (48%), Gaps = 49/274 (17%)
Query: 349 LCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN 408
L AS+ + +A+ S KS +N SH+IR L G+ G++ L + E+ ++ +
Sbjct: 737 LKASIERANALANRAKMASRAKSRFLSNMSHEIRTPLNGVIGMLGLLH-ESPLSADQQRY 795
Query: 409 LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
L LL ++N ILD SKVEAGK++L DFD+GELL+D V A K +E+
Sbjct: 796 LEIAQHSGEGLLKIINDILDFSKVEAGKLELERIDFDLGELLDDFVATMALHAHEKTLEL 855
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
+ + ++GD ++ QIL+NL+ NA+KFT G ++VRA +
Sbjct: 856 TCTAAPDIP---TALRGDPGRVLQILTNLVGNAIKFTEHGEVAVRATL------------ 900
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
+ C D + + V DTG GIP++KR+ +F
Sbjct: 901 ---------LDC--------------------DAHQVRLRLAVRDTGIGIPRDKRERLFH 931
Query: 589 NYVQVKEGE----GGTGLGLGIVQSLVRLMGGDI 618
+ QV GGTGLGL I + LV LMGG++
Sbjct: 932 GFSQVDPSNTRRYGGTGLGLAITKQLVELMGGEL 965
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 20/143 (13%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
S Q+ ++L+ADD++ ++VA L HLG + NG L+ L
Sbjct: 1139 SPTQRARHPARLLLADDNLTNQQVALGILGHLGFDADCVSNGRQVLEA----------LE 1188
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEK----RNQVHIPIIALTAHISGEEADKT 1105
A H YD +L+D +MP+++G E TR IR+ + R+ IPIIA+TAH E+ ++
Sbjct: 1189 ARH---YDLLLLDVQMPLLDGLETTRHIRDPAQGLLNRD---IPIIAMTAHALEEDRERC 1242
Query: 1106 IEAGMDVHLGKPLNRDHLMEAIK 1128
+ AGM+ +L KP++R L A++
Sbjct: 1243 LHAGMNDYLAKPIDRKALAAALE 1265
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 15/163 (9%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQKP-----LRGKKILVADDSMMLRRVAEINLRHLGATV 1025
G+GS + + G ++ +P LRG ++LV DD+ R + L G TV
Sbjct: 972 GQGSIFWCDLPFARQRGPEAEQHRPQPSARLRGARVLVVDDNRHNRELIAAQLSDWGLTV 1031
Query: 1026 EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQ 1085
+G+ AL+ + G+ + P+ L+D MP M+G IR E
Sbjct: 1032 AEAGDGDQALEHLHEGVAQEH--------PFTIALIDVNMPDMDGLTLGEAIRAEP--TL 1081
Query: 1086 VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
++ +TA EA++ + + L KP+ + L+ ++
Sbjct: 1082 AGTALVMMTALGIAREAERCARHALGLQLTKPMRQRELLATLE 1124
>gi|427715757|ref|YP_007063751.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
gi|427348193|gb|AFY30917.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
Length = 1536
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 143/289 (49%), Gaps = 65/289 (22%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
A +QAE S +KS AN SH+IR A+ G+TGL+ +E E + + + +
Sbjct: 881 ARRQAESASQSKSAFLANMSHEIRTPMNAVLGMTGLM----LETPLNREQQDFMETIRIS 936
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
+ LL L+N ILD SK+EAG+M L +FD+ +E+V++L P A K +E+
Sbjct: 937 GDALLTLINEILDLSKLEAGEMALETLNFDLSTCVEEVLELLAPQAHSKELEL------- 989
Query: 476 SVLKFSKV----KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
+ L + V +GD +L+QIL NL+ NA+KFTS G + VRA V+ + S + +
Sbjct: 990 AALIYPHVPTHLQGDASRLRQILMNLIGNAIKFTSVGEVVVRAEVRSQT-----STTVTI 1044
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
H F + DTG GI E + +F +
Sbjct: 1045 H------------------------------------FAITDTGLGITPEDQHQLFTPFT 1068
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
QV GGTGLGL I + LV LMGG+I V+ + GE G+ F F+V
Sbjct: 1069 QVDASTTRKYGGTGLGLAICKQLVTLMGGEIG-VESQLGE-GSKFWFDV 1115
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 22/136 (16%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D+++ ++VA L LG + + NG LQL+ +PYD I
Sbjct: 1290 RILLAEDNLVNQKVALKQLERLGYSADVAGNGREVLQLLEK-------------IPYDLI 1336
Query: 1060 LMDCEMPIMNGYEATRKI-REEE-----KRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
LMDC+MP+++G E T++I R E +R V +IA+TA+ E+ I+AGMD +
Sbjct: 1337 LMDCQMPVLDGLETTKEIHRWSESCFASRRRPV---VIAMTANAMKEDRQMCIDAGMDDY 1393
Query: 1114 LGKPLNRDHLMEAIKY 1129
L KP+ ++ L A+++
Sbjct: 1394 LSKPVIKEKLATALEH 1409
Score = 49.7 bits (117), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L +++LV DD+ R++ G V+ E+ AL + + +Q+ +
Sbjct: 1133 LTNRRLLVVDDNATNRKIIYHQATRWGMQVDKAESAATALSAIYAAY-EQKQI------- 1184
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD IL+D +MP ++G + +I+++ +IP+I LT+ +E + + G +L
Sbjct: 1185 YDVILVDMQMPEIDGMKLGEQIKQDAAI--ANIPLIMLTSTNQRDEIQRALNIGFAAYLV 1242
Query: 1116 KPLNRDHLMEAI 1127
KP+ L++ I
Sbjct: 1243 KPVKPSRLLDTI 1254
>gi|301310625|ref|ZP_07216564.1| probable hybrid sensory kinase [Bacteroides sp. 20_3]
gi|423336876|ref|ZP_17314623.1| PAS domain S-box protein [Parabacteroides distasonis CL09T03C24]
gi|300832199|gb|EFK62830.1| probable hybrid sensory kinase [Bacteroides sp. 20_3]
gi|409239895|gb|EKN32678.1| PAS domain S-box protein [Parabacteroides distasonis CL09T03C24]
Length = 793
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 148/300 (49%), Gaps = 54/300 (18%)
Query: 355 KQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
KQ+ EA + AE+ + KS A SHDIR + I G+ + + + ++N
Sbjct: 265 KQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHVDEHERILDCMEKIN 324
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK+E+G++ L E++F+VGELL+D+V + P K + +
Sbjct: 325 GASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVMMQPEIKNKQQTLNIHVK 384
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKP-SAIGNPSLSSSR 531
+ L+ VKGD ++KQ+L N+LSNA+K+T E G I++ K P + IGN
Sbjct: 385 N---LRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKAPHNGIGN------- 434
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
+F FE D G+G+ E +FE +
Sbjct: 435 ---------------------------------YQFVFE--DNGRGMKPEFLDKIFEPFE 459
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
+ + E GTGLG+ I ++++MGGDI+ V+ E G +G+ F ++ L R+ +D
Sbjct: 460 RASDDEIKRIQGTGLGMSISHKIIQMMGGDIK-VESEYG-KGSRFTIDMPLVCRDQKPDD 517
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 89/155 (57%), Gaps = 18/155 (11%)
Query: 985 EDGERSQAQKPLR-------GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
++G++ + +P + GK+IL+ +D+ + R +A + G T++ NG A+
Sbjct: 646 DEGDQPEPIRPFKLSNVDYSGKRILLVEDNELNREIAVEIIGSTGITIDTAINGLDAVHK 705
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
V Q + G Y ILMD +MPIM+GYEATR+IR ++R+ H+PIIA+TA+
Sbjct: 706 VA-----QSEEGF-----YQIILMDIQMPIMDGYEATRQIRSLQRRDIAHMPIIAMTANA 755
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYLH 1131
E+ I+AGM+ HL KP++ LM + KYL
Sbjct: 756 FSEDVTNAIKAGMNYHLAKPIDIGALMGILSKYLQ 790
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 24/145 (16%)
Query: 993 QKP-----LRGKKILVADDSMMLRRVAEIN----LRHLGATVEACENGEAALQLVRSGLN 1043
QKP + G ++LV DD ++A +N LR +G E +G A++ VR
Sbjct: 513 QKPDDKIEVEGLEVLVVDDD----KIACLNTSSCLREIGINSECVYSGREAIEKVR---- 564
Query: 1044 DQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD 1103
Q L Y +++D +MP MNG E TR+IR + +PII L+A+ E
Sbjct: 565 -QHHLAEKE---YFAVIIDLKMPQMNGIETTRQIR---RFVGADVPIIILSAYDLEEYEA 617
Query: 1104 KTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ E + + KPL + L++ ++
Sbjct: 618 EAKEVKANGFITKPLYKSKLLQVLR 642
>gi|284035554|ref|YP_003385484.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
gi|283814847|gb|ADB36685.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
Length = 1309
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 135/289 (46%), Gaps = 50/289 (17%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
AE+ S KS AN SH+IR L G+ G +L ++ L +N AN LL
Sbjct: 663 AEQASQAKSEFLANMSHEIRTPLNGVIGFTDLVLKTTLTPTQ-HQYLTIVNQSANALLTT 721
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N ILD SK+EAGK++L E D+ EL ++ A KG+EV+L+ + V +F
Sbjct: 722 INDILDFSKIEAGKLELTIEKVDIYELTSQAAEIITYQAQTKGLEVLLNVAP-DVPRF-- 778
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLF 542
+ D V+LKQ+L NLL NAVKFT +G I ++ +++ P + R
Sbjct: 779 IYTDSVRLKQVLVNLLGNAVKFTQQGEIELKVTA---TSVSEPGEGAIR----------- 824
Query: 543 YKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEG 598
F V DTG GI + ++ +F + Q + G
Sbjct: 825 --------------------------FAVRDTGMGIRADMQQKIFHAFSQEDPSTTKKFG 858
Query: 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
GTGLGL I L+ LMG +E++ + G+CF F V L + A D
Sbjct: 859 GTGLGLTIANKLLGLMGSQLELISEPGA--GSCFYFTVQLKVEAGDAVD 905
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 66/127 (51%), Gaps = 19/127 (14%)
Query: 1000 KILVADDS---MMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
K+L+A+D+ +L R + VEA NG A+QL R ++ DL
Sbjct: 1063 KVLIAEDNPVNQLLTRTIINRIAPQAQIVEAA-NGIEAIQLYR---QERADL-------- 1110
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
ILMD +MP MNGYEATR+IRE V IIALTA E +K + AGMD + K
Sbjct: 1111 --ILMDIQMPEMNGYEATRQIRELNPTAPVR--IIALTAGTVKGEREKCLAAGMDDFITK 1166
Query: 1117 PLNRDHL 1123
P+ + L
Sbjct: 1167 PIVEESL 1173
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 22/160 (13%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDS----MMLRRVAEINLRHLGATVE 1026
G GS Y +++ E G+ K++L+ DD+ ++LR++ L+ + VE
Sbjct: 885 GAGSCFYFTVQLKVEAGDAVDWGDLSWIKRVLLVDDNANNRLILRQL--FLLKQIA--VE 940
Query: 1027 ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV 1086
NG ALQL+ A +D ILMD MP ++G E KIR +
Sbjct: 941 EASNGFEALQLL-----------AAQPQGFDVILMDYHMPYLDGLETIEKIRANFSTSPA 989
Query: 1087 HIPIIALTAHISGEEADKTIEAGMDVH--LGKPLNRDHLM 1124
I+ L + E DK A + VH KPL D L
Sbjct: 990 EPTILLLHSSSEDERIDKAC-ARLGVHQRFVKPLKIDDLF 1028
>gi|350564309|ref|ZP_08933127.1| PAS/PAC sensor hybrid histidine kinase [Thioalkalimicrobium
aerophilum AL3]
gi|349777787|gb|EGZ32149.1| PAS/PAC sensor hybrid histidine kinase [Thioalkalimicrobium
aerophilum AL3]
Length = 1018
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 175/383 (45%), Gaps = 89/383 (23%)
Query: 353 LIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM 412
L++Q+E QQA + KS+ AN SH+IR L GI GL EL E+ P +L+T L+++
Sbjct: 318 LMEQIELAQQA---NAAKSMFLANMSHEIRTPLNGIIGLSELGLQESSP-YDLKTYLKKI 373
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
++ LLG+LN ILD SK+EAGK++++ + F +++ + D+F A K ++ L
Sbjct: 374 SLSGRLLLGILNDILDFSKIEAGKLEIVAKPFHFPDVITHLRDIFSAAASEKQLDFDL-Y 432
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
D + ++ GD +++ Q+L N++ NA+KFT +GH+ + H
Sbjct: 433 VDNKIKQY--YLGDELRINQVLINIIGNAIKFTKQGHVKL-------------------H 471
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
L+S++ E A F V DTG G+ K +F+++ Q
Sbjct: 472 VLLESVA----------------------EGADHIRFIVCDTGIGMSKTDLAQLFQSFSQ 509
Query: 593 VKEG----EGGTGLGLGIVQSLVRLMGGD-IEIVDKENGERGTCFRFNVFLAIREASAND 647
V GGTGLGL I Q+LV M G IE+ K+ +G+ F F V L
Sbjct: 510 VDNSITREFGGTGLGLVISQNLVYAMNGSRIEVTSKKT--QGSEFSFVVPL--------- 558
Query: 648 NNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVL 707
L D D + R S IL HV+L
Sbjct: 559 --------LYCTDEQIADIE-----------------RERSIDQQILQSSFHPLMGHVLL 593
Query: 708 LIANEERRRIAQKFMENLGINVS 730
+ N+ + +AQK + + G+ VS
Sbjct: 594 VEDNQINQEVAQKKLLSFGLTVS 616
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 26/158 (16%)
Query: 981 EIEEEDGERSQAQK-------PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEA 1033
+I + + ERS Q+ PL G +LV D+ + + VA+ L G TV E+G+
Sbjct: 565 QIADIERERSIDQQILQSSFHPLMGHVLLVEDNQIN-QEVAQKKLLSFGLTVSIAEHGQQ 623
Query: 1034 ALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIAL 1093
A+Q V +D ILMD +MP+M GYEATR IR+ K IPIIAL
Sbjct: 624 AIQRVAEQ-------------KFDLILMDVQMPVMGGYEATRHIRQTHK----DIPIIAL 666
Query: 1094 TAHISGEEADKTIEAGMDVHLGKPL-NRDHLMEAIKYL 1130
TA E+ +K +E GM+ HL KPL RD + ++L
Sbjct: 667 TAAAMIEDKNKALEVGMNDHLSKPLVTRDLYKQLARFL 704
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+L+ +D+ + + V + L+ LG + NG A+ L+ + YD I
Sbjct: 899 KVLLVEDNKVNQIVVKKQLKLLGISPTIANNGLEAVALLEKNAS-----------AYDLI 947
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIP---IIALTAHISGEEADKTIEAGMDVHLGK 1116
MD MP M G EATR IR+ Q HI IIALT E+ + GM+ L K
Sbjct: 948 FMDLIMPEMGGIEATRWIRQ-----QAHIQQPIIIALTGAEQNEDKQACWQVGMNGFLLK 1002
Query: 1117 PLNRDHLMEAI 1127
PL+ L + +
Sbjct: 1003 PLDNKKLAQIL 1013
>gi|298375360|ref|ZP_06985317.1| hybrid sensory kinase [Bacteroides sp. 3_1_19]
gi|298267860|gb|EFI09516.1| hybrid sensory kinase [Bacteroides sp. 3_1_19]
Length = 793
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 148/300 (49%), Gaps = 54/300 (18%)
Query: 355 KQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
KQ+ EA + AE+ + KS A SHDIR + I G+ + + + ++N
Sbjct: 265 KQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHVDERERILDCMEKIN 324
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK+E+G++ L E++F+VGELL+D+V + P K + +
Sbjct: 325 GASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVMMQPEIKNKQQTLNIHVK 384
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKP-SAIGNPSLSSSR 531
+ L+ VKGD ++KQ+L N+LSNA+K+T E G I++ K P + IGN
Sbjct: 385 N---LRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKDPHNGIGN------- 434
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
+F FE D G+G+ E +FE +
Sbjct: 435 ---------------------------------YQFVFE--DNGRGMKPEFLDKIFEPFE 459
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
+ + E GTGLG+ I ++++MGGDI+ V+ E G +G+ F ++ L R+ +D
Sbjct: 460 RASDDEIKRIQGTGLGMSISHKIIQMMGGDIK-VESEYG-KGSRFTIDMPLVCRDQKPDD 517
Score = 90.1 bits (222), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 18/153 (11%)
Query: 987 GERSQAQKPLR-------GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR 1039
G++ + +P + GK+IL+ +D+ + R +A + G T++ NG A+ V
Sbjct: 648 GDQPEPIRPFKLSNADYSGKRILLVEDNELNREIAVEIIGSTGITIDTAINGLDAVHKVA 707
Query: 1040 SGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG 1099
Q + G Y ILMD +MPIM+GYEATR+IR ++R+ H+PIIA+TA+
Sbjct: 708 -----QSEEGF-----YQIILMDIQMPIMDGYEATRQIRSLQRRDIAHMPIIAMTANAFS 757
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAI-KYLH 1131
E+ I+AGM+ HL KP++ LM + KYL
Sbjct: 758 EDVTNAIKAGMNYHLAKPIDIGALMGILSKYLQ 790
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 24/145 (16%)
Query: 993 QKP-----LRGKKILVADDSMMLRRVAEIN----LRHLGATVEACENGEAALQLVRSGLN 1043
QKP + G ++LV DD ++A +N LR +G E +G A++ VR
Sbjct: 513 QKPDDKIEVEGLEVLVVDDD----KIACLNTSSCLREIGINSECVYSGSEAIEKVR---- 564
Query: 1044 DQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD 1103
Q L Y +++D +MP MNG E TR+IR + +PII L+A+ E
Sbjct: 565 -QHHLAEKE---YFAVIIDLKMPQMNGIETTRQIR---RFVGADVPIIILSAYDLEEYEA 617
Query: 1104 KTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ E + + KPL + L++ ++
Sbjct: 618 EAKEVKANGFITKPLYKSKLLQVLR 642
>gi|295660694|ref|XP_002790903.1| histidine kinase D5 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281155|gb|EEH36721.1| histidine kinase D5 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 2003
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 167/340 (49%), Gaps = 63/340 (18%)
Query: 350 CASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
C + Q ++ ++ +++ F+N SH+IR L GI G I ++L+++
Sbjct: 1304 CTDINDQKLLERKLNKEMESRTNFFSNMSHEIRTPLNGILGAIPHIL-----DTQLDSDQ 1358
Query: 410 RQM----NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
R+M + +N+L L+++ILD SKVEAGKM ++ + F+V ++E+V+D A+ KG
Sbjct: 1359 RRMLDIIHNSSNNLSELVDNILDVSKVEAGKMNIVRQVFNVRSVVEEVIDTIGSRAIDKG 1418
Query: 466 VEV-VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN 524
+E+ L S+ + F GDR +++QIL NL+ N+VKFTS G I R
Sbjct: 1419 LELNYLVESNVPKMVF----GDRFRIRQILLNLMGNSVKFTSHGEILTR----------- 1463
Query: 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRK 584
C + + KA ++N ++ + FEV DTG+G K K
Sbjct: 1464 ---------------CSIHHDSKA-----SLNGSE-----ILLNFEVVDTGRGFSKADAK 1498
Query: 585 TVFENYVQVKEGEG-----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
+ + + Q+ EG G G+GLGL + + LV + GG + KE G +F+ F+
Sbjct: 1499 RLMQRFSQI-EGNGSQQHTGSGLGLFLSRQLVEMHGGQLTPTSKE----GQGSKFSFFVK 1553
Query: 640 IREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPS 679
+ E S+ Q EL+ +AA +L K+PS
Sbjct: 1554 VDEVSSRPPTPQ---ELSKDGNAARCMELTEERSAPKSPS 1590
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G ++L+ +D R V L + E NG+ + +V S ++ G Y
Sbjct: 1848 KGYRVLLVEDDETNRTVMLKYLEKVKLVSETASNGQECVDMVFS-----KEPGY-----Y 1897
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLG 1115
I+ D +MPI NGYE ++IR E+RN IPI+AL+A+ ++ D AG + ++
Sbjct: 1898 SLIICDIQMPIKNGYETCQEIRSWEQRNHFPQIPIMALSANAMTDQIDNASRAGFNGYVT 1957
Query: 1116 KPLNRDHL 1123
KP+ + L
Sbjct: 1958 KPIKHNEL 1965
>gi|85705883|ref|ZP_01036979.1| sensor histidine kinase/response regulator [Roseovarius sp. 217]
gi|85669471|gb|EAQ24336.1| sensor histidine kinase/response regulator [Roseovarius sp. 217]
Length = 646
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 133/282 (47%), Gaps = 50/282 (17%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH+IR + G+ G+ EL +E E + LL ++N +LD
Sbjct: 216 KSSFLANMSHEIRTPMNGVVGMAELL-METDLTEEQRLFASTIKTSGEALLVIINDVLDY 274
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EA K+ L E FD+ + ++V L A KG+E+++D + ++ GD +
Sbjct: 275 SKIEAEKLVLHAEPFDLERCIHELVTLMQVNARDKGLELLVDYD---LFLPTRFVGDPGR 331
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
++QI++NLL NAVKFT GH+ VR P A G S+ +
Sbjct: 332 IRQIMTNLLGNAVKFTESGHVLVRVTGVHPDAEGRASVHVT------------------- 372
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG----GTGLGLG 605
V+DTG GIP +K +F + QV + GTGLGL
Sbjct: 373 ---------------------VEDTGIGIPPDKIDHIFGEFNQVDDERNRKFEGTGLGLA 411
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
I Q L+RLMGG I VD E G +G+ F F+V L + E D
Sbjct: 412 ISQKLIRLMGGKI-WVDSEPG-KGSTFGFSVSLPVAEIVEAD 451
>gi|94264450|ref|ZP_01288239.1| PAS [delta proteobacterium MLMS-1]
gi|93455140|gb|EAT05362.1| PAS [delta proteobacterium MLMS-1]
Length = 1089
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 146/300 (48%), Gaps = 47/300 (15%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K EA AE ++ KS AN SH+IR + I GL EL ++ +E +L +++
Sbjct: 482 KLREAKIAAEAANLAKSAFLANMSHEIRTPMNAIIGLSELT-LQGELAAEQRDSLEKIHS 540
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDP 472
+ LLG++N ILD SK+EAG +QL F L+E + LF A KG+E+V LDP
Sbjct: 541 SSQLLLGIINDILDYSKIEAGHLQLAPHPFRPARLVERLGHLFRQNAAAKGLELVYHLDP 600
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
VL GD ++L QI +NLL+NA+KFT +G + +R
Sbjct: 601 EIPPVL-----LGDELRLGQIFTNLLANALKFTRKGRVELR------------------- 636
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+Q ++ + A + A V DTG GI +E+RK +F+ + Q
Sbjct: 637 --IQRLAAVAEAEADAAAAAVGLRCA------------VSDTGVGIDQEQRKRLFKPFSQ 682
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
+ GGTGLGL I LV MGG +++ + E G RG+ F F + L A A D
Sbjct: 683 ADDTTTRKYGGTGLGLVISARLVEQMGGRLQL-ESEPG-RGSTFFFTITLPQAGADAIDQ 740
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 17/135 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK I+VA+D+ + R VA+ L GA + ++G AL+L+ S +D
Sbjct: 758 LTGKIIMVAEDNQLNREVAQRMLARTGAEILLADHGAQALELINS--HD----------- 804
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +LMD +MP+M+G+ A R IR++ R +PIIAL+A E+ + + AGM+ H+
Sbjct: 805 CDLVLMDLQMPVMDGFTAARLIRKQFPR----LPIIALSAAAMEEDRQQALAAGMNDHMA 860
Query: 1116 KPLNRDHLMEAIKYL 1130
KP++ L + L
Sbjct: 861 KPIDSGRLYRTLSQL 875
>gi|209525666|ref|ZP_03274203.1| histidine kinase [Arthrospira maxima CS-328]
gi|376003150|ref|ZP_09780965.1| Sensor histidine kinase with a response regulator receiver domain
(two-component signal transduction system) (fragment)
[Arthrospira sp. PCC 8005]
gi|209493835|gb|EDZ94153.1| histidine kinase [Arthrospira maxima CS-328]
gi|375328475|emb|CCE16718.1| Sensor histidine kinase with a response regulator receiver domain
(two-component signal transduction system) (fragment)
[Arthrospira sp. PCC 8005]
Length = 522
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 154/354 (43%), Gaps = 66/354 (18%)
Query: 286 SQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARK 345
S +++ G+ +VY PR + +H ++ I +GV + + ++ AR+
Sbjct: 60 SGYQLWGLLAVYQNYHPRSWTTAEIHTVTQ------IGSQLGVAVQQAELLAQTQEQARQ 113
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
+A + A+ + KS AN SH++R L I G +L E
Sbjct: 114 ----------LQQAKEIADAANRAKSEFLANMSHELRTPLNAILGFAQLMSTNQNLAPEK 163
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
++ +N LLGL+N IL+ S++EAG L FD+ + L+ + D F A K
Sbjct: 164 RQHIEIINRSGEHLLGLINDILEMSRIEAGGATLQVNAFDLYDFLKSLEDFFKLRATSKN 223
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP 525
+ ++ + G + +K D KL+Q+L NLL NA+KFT EG ++VR
Sbjct: 224 LHLIFERPQGLI---RYIKADDKKLRQVLINLLVNAIKFTDEGSVTVRV----------- 269
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
+ Q + + FEV+DTG GI E +
Sbjct: 270 -------------------------------SHQNQDTSDILKFEVEDTGLGIAPEDCEG 298
Query: 586 VFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+FE + Q + G G+GLGL I Q V LMGG+I + N +G+ F F +
Sbjct: 299 LFEAFAQTETGLNASEGSGLGLAIAQQFVTLMGGEITVRSCLN--QGSTFSFTI 350
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D R + L LG +V A NG A+ + + P D I
Sbjct: 381 RILVVEDRESNRLLLVELLSVLGFSVRAANNGSEAIAIWQEW--------NP-----DLI 427
Query: 1060 LMDCEMPIMNGYEATRKIREEE-KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMD MP++NGYEATR+IR + R+ V IIALTA E+ ++ G + L KP
Sbjct: 428 LMDMRMPVVNGYEATRQIRSQPGGRDTV---IIALTASAFEEQRQDIMKVGCNDLLRKPF 484
Query: 1119 NRDHLMEAI-KYL 1130
R L+ + +YL
Sbjct: 485 QRGELLSKLSQYL 497
>gi|158520998|ref|YP_001528868.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
Hxd3]
gi|158509824|gb|ABW66791.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
Hxd3]
Length = 1791
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 131/271 (48%), Gaps = 55/271 (20%)
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVE 433
AN SH+IR + G+ G+ +L +LE + A LL ++N +LD SK+E
Sbjct: 1423 LANMSHEIRTPMNGVIGMTDLLLDTDLTEEQLEYA-ESVRSSAESLLVIINDVLDFSKIE 1481
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV--EVVLDPSDGSVLKFSKVKGDRVKLK 491
AGK++L E DFD+ +LL++V D P A RK + +V+L S+L KGD V+L+
Sbjct: 1482 AGKLKLEEIDFDLEKLLKEVNDTMAPRARRKRIRHDVILKEEVPSLL-----KGDPVRLR 1536
Query: 492 QILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGD 551
QIL NL NAVKFT G + V
Sbjct: 1537 QILFNLCENAVKFTEAGSVKV--------------------------------------- 1557
Query: 552 LEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIV 607
AV+A + + FEV DTG GI E + +FE++ QV GGTGLGL I
Sbjct: 1558 --AVSAPHQTDTTATLLFEVTDTGIGIAPEHHQAIFESFSQVDASTTRQYGGTGLGLAIT 1615
Query: 608 QSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ LV L+ G+I + E G +G+ F F + L
Sbjct: 1616 KRLVSLLDGEIGVT-SEPG-KGSTFWFTLAL 1644
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
+PLR IL+ +DS + RRV L +G T NG A++L
Sbjct: 1669 RPLR---ILLVEDSAISRRVLLQMLDKMGHTATIAVNGAEAVKLFSRQ------------ 1713
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
+D +LMD +MP+M+G AT++I+ +K +P+IA+TA+ + ++ + G+D +
Sbjct: 1714 -SFDMVLMDIQMPVMDGIAATKQIKSMQKETGKKVPVIAITANAMAGDRERILSQGLDDY 1772
Query: 1114 LGKPLNRDHLMEAIK 1128
+ KP+ + L +AI+
Sbjct: 1773 VAKPVKMETLADAIR 1787
>gi|356512385|ref|XP_003524900.1| PREDICTED: histidine kinase 3-like [Glycine max]
Length = 1030
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 178/398 (44%), Gaps = 70/398 (17%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K+ME +QAE + KS A SH+IR + G+ G++ + ++ + +R
Sbjct: 432 KEMELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLHML-MDTDLDVTQQEYVRTAQE 490
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
L+ L+N +LD +K+E GK++L FD+ +L+DV+ LF + KGVE+ + SD
Sbjct: 491 SGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSD 550
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISV---------------RACVKKP 519
+ GD + +QI++NL+ N++KFT +GHI V + +
Sbjct: 551 HVP---ELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVRSIEVDKESNSEN 607
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
+ G+P S R S +K G L + ++ D + V+DTG+GIP
Sbjct: 608 TLSGSPVADSRR-------SWEGFKAFSQEGPLGSFSSPSSD--LVNLIVSVEDTGEGIP 658
Query: 580 KEKRKTVFENYVQV----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
E + ++ ++QV GGTG+GL I + LV LM G+I V + G+ F F
Sbjct: 659 LESQPLIYTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIP--KTGSTFTFT 716
Query: 636 VFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILS 695
G ++ + ++Q +N N P S
Sbjct: 717 AVFT------------------NGHCSSNECKVQQIN--------------NQPH----S 740
Query: 696 PGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVS 733
S EG +++ R ++++ ++ LGI+V VS
Sbjct: 741 ASSEFEGMTALIIDPRSVRAKVSRYHIQRLGIHVEMVS 778
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LRG+KIL+ DD+ + R VA L+ GA V +G+ A+ L PH
Sbjct: 891 LRGRKILIVDDNSVNRAVAAGALKKYGADVVCVSSGKDAIS----------SLKPPH--Q 938
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR-------------NQVHIPIIALTAHISGEEA 1102
+D MD +MP M+G+EAT+++RE E H+PI+A+TA +
Sbjct: 939 FDACFMDIQMPEMDGFEATKRVREMEDSVNREVSMDDFENITNWHVPILAMTADVIHATH 998
Query: 1103 DKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ ++ GMD ++ KP + L +
Sbjct: 999 EECLKWGMDGYVSKPFEAEQLYREV 1023
>gi|428318556|ref|YP_007116438.1| integral membrane sensor hybrid histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428242236|gb|AFZ08022.1| integral membrane sensor hybrid histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 887
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 137/281 (48%), Gaps = 48/281 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE + KS AN SH++R+ L I G +L E N + +
Sbjct: 414 AKEKAEVANQAKSTFIANMSHELRSPLNAILGFSQLMVRATNMPPEQYENAGIIYRSGDY 473
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL L+N++LD SK+EAGK L DFD+ LL D+ D+ H A G+++V ++ +V
Sbjct: 474 LLTLINNVLDLSKIEAGKTTLNLTDFDLHILLNDLEDMLHLRANNAGLKLVFQRTE-NVP 532
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
++ + D+VKL+Q+L NLLSNA+KFTSEG I++ FL
Sbjct: 533 RY--ICTDQVKLRQVLINLLSNAIKFTSEGQITLNV-------------------FL--- 568
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG-- 596
Q + F + DTG GI + +F+ + Q + G
Sbjct: 569 ------------------GEQETTDVFNLHFRIRDTGVGIAAAELPKLFDAFSQAQAGKD 610
Query: 597 -EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
E GTGLGL I + V+LMGGDI V+ E G +GT F+ +
Sbjct: 611 LEEGTGLGLAISRKFVQLMGGDIS-VESELG-KGTTFQLYI 649
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 31/177 (17%)
Query: 971 GEGSS--RYKQTEIEEED-----GERSQAQKPLRGK---KILVADDSMMLRRVAEINLRH 1020
G+G++ Y QT++ +E GE S+ + G+ KIL DD + R++ L
Sbjct: 640 GKGTTFQLYIQTKLGQETNSKSTGEYSRVLGLVPGQLSYKILTVDDKSINRQLLIKLLSP 699
Query: 1021 LGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREE 1080
LG V+ NG+ A+ + D PH+ I MD MP+M+GYEAT+ I+
Sbjct: 700 LGFEVKEASNGQEAIAI--------WDEWEPHL-----IWMDMRMPVMDGYEATKYIKST 746
Query: 1081 EKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEA------IKYLH 1131
K N +IALTA + EE + AG D + KP + EA +KY++
Sbjct: 747 TKGNAT--AVIALTASVLEEEKAIVLSAGCDDFVRKPFVEHTIFEALAKHLGVKYIY 801
>gi|262382051|ref|ZP_06075189.1| two-component system sensor histidine kinase [Bacteroides sp.
2_1_33B]
gi|262297228|gb|EEY85158.1| two-component system sensor histidine kinase [Bacteroides sp.
2_1_33B]
Length = 793
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 148/300 (49%), Gaps = 54/300 (18%)
Query: 355 KQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
KQ+ EA + AE+ + KS A SHDIR + I G+ + + + ++N
Sbjct: 265 KQLKEALKSAEQANQAKSNFLARMSHDIRTPMNAIMGMATIAKAHVDEHERILDCMEKIN 324
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK+E+G++ L E++F+VGELL+D+V + P K + +
Sbjct: 325 GASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVMMQPEIKNKQQTLNIHVK 384
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKP-SAIGNPSLSSSR 531
+ L+ VKGD ++KQ+L N+LSNA+K+T E G I++ K P + IGN
Sbjct: 385 N---LRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKDPHNGIGN------- 434
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
+F FE D G+G+ E +FE +
Sbjct: 435 ---------------------------------YQFVFE--DNGRGMKPEFLDKIFEPFE 459
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
+ + E GTGLG+ I ++++MGGDI+ V+ E G +G+ F ++ L R+ +D
Sbjct: 460 RASDDEIKRIQGTGLGMSISHKIIQMMGGDIK-VESEYG-KGSRFTIDMPLVCRDQKPDD 517
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 89/155 (57%), Gaps = 18/155 (11%)
Query: 985 EDGERSQAQKPLR-------GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
++G++ + +P + GK+IL+ +D+ + R +A + G T++ NG A+
Sbjct: 646 DEGDQPEPIRPFKLSNVDYSGKRILLVEDNELNREIAVEIIGSTGITIDTAINGLDAVHK 705
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
V Q + G Y ILMD +MPIM+GYEATR+IR ++R+ H+PIIA+TA+
Sbjct: 706 VA-----QSEEGF-----YQIILMDIQMPIMDGYEATRQIRSLQRRDIAHMPIIAMTANA 755
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYLH 1131
E+ I+AGM+ HL KP++ LM + KYL
Sbjct: 756 FSEDVTNAIKAGMNYHLAKPIDIGALMGILSKYLQ 790
Score = 48.5 bits (114), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 24/145 (16%)
Query: 993 QKP-----LRGKKILVADDSMMLRRVAEIN----LRHLGATVEACENGEAALQLVRSGLN 1043
QKP + G ++LV DD ++A +N L+ +G E +G A++ VR
Sbjct: 513 QKPDDKIEVEGLEVLVVDDD----KIACLNTSSCLQEIGINSECVYSGSEAIEKVR---- 564
Query: 1044 DQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD 1103
Q L Y +++D +MP MNG E TR+IR + +PII L+A+ E
Sbjct: 565 -QHHLAEKE---YFAVIIDLKMPQMNGIETTRQIR---RFVGADVPIIILSAYDLEEYEA 617
Query: 1104 KTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ E + + KPL + L++ ++
Sbjct: 618 EAKEVKANGFITKPLYKSKLLQVLR 642
>gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252]
gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252]
Length = 1346
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 144/302 (47%), Gaps = 54/302 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++ R S KS AN SH+IR + G+ G+ EL +E E + ++
Sbjct: 805 ANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELL-LEMDLTKEQRECVEIIHRSGET 863
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL +LN ILD SK+EAG+++L DF++ E +EDV+ LF P A K +E++ + ++
Sbjct: 864 LLTILNDILDFSKIEAGRLELENIDFNLQETIEDVITLFAPRAAAKQLELICFIEERAL- 922
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+V+GD +L+Q+LSNL+ NA+KFT G + V A +++
Sbjct: 923 ---EVQGDPHRLRQVLSNLIGNAIKFTERGEVVVEAELER-------------------- 959
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK---- 594
DE + V DTG GIP ++ +F+ + Q+
Sbjct: 960 ---------------------LDERRAHWRISVRDTGIGIPPDRLSHLFQPFTQLDGSTT 998
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
GGTGLGL I + LV +MGG I V+ E G+ T F V + R +S N +
Sbjct: 999 RRYGGTGLGLAISKQLVEMMGGTIG-VESEVGKGST---FTVRIPFRLSSQRKLNGDERR 1054
Query: 655 EL 656
L
Sbjct: 1055 AL 1056
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 13/134 (9%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
S +P +L+A+D+ + ++VA +L LG T + +G+ A++ G
Sbjct: 1213 SPTPRPAGRGHLLLAEDNPVNQKVALYHLERLGYTCDVVGDGKQAVEAALRG-------- 1264
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
YD ILMD MP+M+G+EAT +IRE E H PIIA+TA+ E ++ +EAG
Sbjct: 1265 -----GYDAILMDVHMPVMDGFEATAQIREREAERGRHTPIIAMTANALRGERERCLEAG 1319
Query: 1110 MDVHLGKPLNRDHL 1123
MD ++ KP +D L
Sbjct: 1320 MDDYIAKPFKKDEL 1333
>gi|422306135|ref|ZP_16393320.1| sensory box protein [Vibrio cholerae CP1035(8)]
gi|408627199|gb|EKL00016.1| sensory box protein [Vibrio cholerae CP1035(8)]
Length = 1268
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 153/331 (46%), Gaps = 66/331 (19%)
Query: 327 GVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALA 386
G L L F + + E L +A +QAE + KS AN SH+IR +
Sbjct: 501 GQLAGFLGIAFDLTKQLKYEAELA-------QAKEQAESANKAKSEFLANMSHEIRTPMN 553
Query: 387 GITGLIELCYVEAGPGSELETN----LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEE 442
G+ GL++L S L+ + + A LL LLN ILD SK+EAGK++L
Sbjct: 554 GVLGLLQLV-----ANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPH 608
Query: 443 DFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAV 502
F + +LL+D+ +F A +KG+EV+ D + + GD ++KQ+L NL+ NA+
Sbjct: 609 PFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTADVP---EHLLGDSFRIKQVLINLVGNAI 665
Query: 503 KFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562
KFT +G I + +I + SL E
Sbjct: 666 KFTDKGEILI--------SIRSQSLP---------------------------------E 684
Query: 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDI 618
+ +F + DTG GI E++ +F + Q + GGTGLGL I + LV LMGG+I
Sbjct: 685 GEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEI 744
Query: 619 EIVDKENGERGTCFRFNVFLAIREASANDNN 649
V+ E G G+ F FNV + E A N+
Sbjct: 745 G-VESEFG-CGSTFSFNVVVRNAEKRAIQNS 773
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 13/137 (9%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
PL+G +L+ +D++ + VA L+ LGAT++ +GE AL+++ S A H
Sbjct: 925 PLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEMLES--------TAEH-- 974
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
+D +LMD +MP M+GY+ TR+IR + R+Q+ +PIIA+TAH ++ + AGM H+
Sbjct: 975 -FDMVLMDIQMPGMDGYQTTREIR-KLPRHQL-LPIIAITAHAMSDDIAACLAAGMQDHI 1031
Query: 1115 GKPLNRDHLMEAIKYLH 1131
KP + + L I H
Sbjct: 1032 AKPFDLNELTTKILSHH 1048
>gi|169600681|ref|XP_001793763.1| hypothetical protein SNOG_03184 [Phaeosphaeria nodorum SN15]
gi|160705494|gb|EAT89915.2| hypothetical protein SNOG_03184 [Phaeosphaeria nodorum SN15]
Length = 2299
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 160/340 (47%), Gaps = 64/340 (18%)
Query: 329 LISMLTFVFKSARAAR-KEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAG 387
++ M ARAA K A I+ M+ ++A + KSL AN SH++R L G
Sbjct: 1779 MLEMQKRALAQARAAEIKAKEAEAIAIRNMKLKEEAAKA---KSLFLANVSHELRTPLNG 1835
Query: 388 ITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447
+ G+ EL SE + VCA+ LL ++N +LD SK+EAGKM ++E +
Sbjct: 1836 VIGMSELLKASI-LNSEQTGYADSIRVCADTLLSIINDLLDYSKLEAGKMSVMEMPLSLT 1894
Query: 448 ELLEDVVDLFHPVAMRKGVEVV----LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVK 503
E + +VV +G++ V L+P V GD V+L QIL NLLSN+ K
Sbjct: 1895 ETITEVVRALAYTNAERGLKTVEQLELNPE-------MMVMGDPVRLHQILMNLLSNSYK 1947
Query: 504 FTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDEN 563
FT +G ++VRA + + + DE
Sbjct: 1948 FTPKGSVTVRAVIDQ----------------------------------------ETDEY 1967
Query: 564 AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVR-LMGGDI 618
A + T V DTG GIP E++K +F + Q++ GGTGLGL I ++L+ +M G +
Sbjct: 1968 A-DVTISVIDTGIGIPAEQKKKLFLPFSQIESSSSRSYGGTGLGLSICKALIENVMHGKV 2026
Query: 619 EIVDKENG-ERGTCFRFNV-FLAIREASANDNNTQGEKEL 656
+ +++G +RGT F++ F + + S D E +L
Sbjct: 2027 WLDSRDSGPDRGTTVSFSLRFRKVAKTSVLDRRNTRETDL 2066
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 70/124 (56%), Gaps = 8/124 (6%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
P ++ +A+D+++ +R+A ++ LG +A +G + + ++ R
Sbjct: 2092 PRNELRVCIAEDNLINQRIAISFVQKLGFRCDAYLDGLKTIDALERASDNGR-------- 2143
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
P+ +LMD +MP +GYEAT++IR+ + +I IIA+TA + +K +E+GM+ +L
Sbjct: 2144 PFHLVLMDVQMPHCDGYEATKRIRKHPNPDIRNILIIAMTASAIQGDREKCLESGMNNYL 2203
Query: 1115 GKPL 1118
KP+
Sbjct: 2204 AKPV 2207
>gi|94264862|ref|ZP_01288637.1| PAS [delta proteobacterium MLMS-1]
gi|93454683|gb|EAT04948.1| PAS [delta proteobacterium MLMS-1]
Length = 1089
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 146/300 (48%), Gaps = 47/300 (15%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K EA AE ++ KS AN SH+IR + I GL EL ++ +E +L +++
Sbjct: 482 KLREAKIAAEAANLAKSAFLANMSHEIRTPMNAIIGLSELT-LQGELAAEQRDSLEKIHS 540
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDP 472
+ LLG++N ILD SK+EAG +QL F L+E + LF A KG+E+V LDP
Sbjct: 541 SSQLLLGIINDILDYSKIEAGHLQLAPHPFRPARLVERLGHLFRQNAAAKGLELVYHLDP 600
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
VL GD ++L QI +NLL+NA+KFT +G + +R
Sbjct: 601 EIPPVL-----LGDELRLGQIFTNLLANALKFTRKGRVELR------------------- 636
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+Q ++ + A + A V DTG GI +E+RK +F+ + Q
Sbjct: 637 --IQRLAAVAEAEADAAAAAVGLRCA------------VSDTGVGIDQEQRKRLFKPFSQ 682
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
+ GGTGLGL I LV MGG +++ + E G RG+ F F + L A A D
Sbjct: 683 ADDTTTRKYGGTGLGLVISARLVEQMGGRLQL-ESEPG-RGSTFFFTITLPQAGADAIDQ 740
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 17/135 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK I+VA+D+ + R VA+ L GA + ++G AL+L+ S +D
Sbjct: 758 LTGKIIMVAEDNQLNREVAQRMLARTGAEILLADHGAQALELINS--HD----------- 804
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +LMD +MP+M+G+ A R IR++ R +PIIAL+A E+ + + AGM+ H+
Sbjct: 805 CDLVLMDLQMPVMDGFTAARLIRKQFPR----LPIIALSAAAMEEDRQQALAAGMNDHMA 860
Query: 1116 KPLNRDHLMEAIKYL 1130
KP++ L + L
Sbjct: 861 KPIDSGCLYRTLSQL 875
>gi|320353300|ref|YP_004194639.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
2032]
gi|320121802|gb|ADW17348.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
2032]
Length = 1282
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 148/309 (47%), Gaps = 55/309 (17%)
Query: 338 KSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYV 397
+S R A +++ A++++ ++AE S KS AN SH+IR + I G+ L +
Sbjct: 732 ESVREANRQLE--AAIVRAERLAREAESASRAKSQFLANMSHEIRTPMNAIIGMTHLA-M 788
Query: 398 EAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLF 457
+ + L + A LLGLLN ILD SK+EAG+++L F +LLE+V+
Sbjct: 789 QTRDDDKRGRFLDTVRHSAESLLGLLNDILDFSKMEAGQLKLSTAPFSPRQLLEEVMATL 848
Query: 458 HPVAMRKGVEVVLD--PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRAC 515
A KG+ + +D P+ L GD ++L+QIL NL+ NA+KFT+ G I++R
Sbjct: 849 QMPAGEKGLRLAMDIAPNLPPCL-----VGDDLRLRQILLNLVGNAIKFTAAGSITLRIT 903
Query: 516 VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTG 575
++PS+ G+ L F V DTG
Sbjct: 904 QEQPSSGGSEPL---------------------------------------IHFTVIDTG 924
Query: 576 KGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTC 631
GI +EKR +F ++ Q GGTGLGL I + LV LMGG I + + N +G+
Sbjct: 925 IGIAEEKRALIFNSFEQADNSYVRQYGGTGLGLSICKQLVTLMGGKIWVESRIN--QGSA 982
Query: 632 FRFNVFLAI 640
F V L +
Sbjct: 983 FHVLVPLPV 991
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 33/160 (20%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
+R A G +ILV DD+ + R VA + L GE + +GL R
Sbjct: 1001 ADREAAAAKRTGLRILVVDDNEVNRDVASMLL-----------EGEHRVNTAGNGLEALR 1049
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV-------------------H 1087
L YD +LMD +MP+++G AT IR E++ + H
Sbjct: 1050 ALALNR---YDVVLMDVQMPVLDGLAATTAIRAIEQQRPLAIELPPEISDPLAANLKGRH 1106
Query: 1088 IPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ I+A+TAH G + + + AGMD ++ KP L+E +
Sbjct: 1107 LTIVAMTAHAMGGDREMCLAAGMDTYITKPFQPGQLLEVL 1146
>gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1]
Length = 1252
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 153/331 (46%), Gaps = 66/331 (19%)
Query: 327 GVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALA 386
G L L F + + E L +A +QAE + KS AN SH+IR +
Sbjct: 485 GQLAGFLGIAFDLTKQLKYEAELA-------QAKEQAESANKAKSEFLANMSHEIRTPMN 537
Query: 387 GITGLIELCYVEAGPGSELETN----LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEE 442
G+ GL++L S L+ + + A LL LLN ILD SK+EAGK++L
Sbjct: 538 GVLGLLQLV-----ANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPH 592
Query: 443 DFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAV 502
F + +LL+D+ +F A +KG+EV+ D + + GD ++KQ+L NL+ NA+
Sbjct: 593 PFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTADVP---EHLLGDSFRIKQVLINLVGNAI 649
Query: 503 KFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562
KFT +G I + +I + SL E
Sbjct: 650 KFTDKGEILI--------SIRSQSLP---------------------------------E 668
Query: 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDI 618
+ +F + DTG GI E++ +F + Q + GGTGLGL I + LV LMGG+I
Sbjct: 669 GEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEI 728
Query: 619 EIVDKENGERGTCFRFNVFLAIREASANDNN 649
V+ E G G+ F FNV + E A N+
Sbjct: 729 G-VESEFG-CGSTFSFNVVVRNAEKRAIQNS 757
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 13/137 (9%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
PL+G +L+ +D++ + VA L+ LGAT++ +GE AL+++ S A H
Sbjct: 909 PLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEMLES--------TAEH-- 958
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
+D +LMD +MP M+GY+ TR+IR + R+Q+ +PIIA+TAH ++ + AGM H+
Sbjct: 959 -FDMVLMDIQMPGMDGYQTTREIR-KLPRHQL-LPIIAITAHAMSDDIAACLAAGMQDHI 1015
Query: 1115 GKPLNRDHLMEAIKYLH 1131
KP + + L I H
Sbjct: 1016 AKPFDLNELTTKILSHH 1032
>gi|350562281|ref|ZP_08931116.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349779514|gb|EGZ33857.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 1324
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 137/286 (47%), Gaps = 53/286 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A +QAE + KS AN SH+IR L I GL L + G E L +++
Sbjct: 708 DAREQAEAANRAKSAFLANMSHEIRTPLNAIVGLTHLLRRD-GVRPEQVARLDRIDNAGR 766
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK+EAG+++L DF + +L++V + A KG+ + +DP V
Sbjct: 767 HLLSIINDILDLSKIEAGRLELETTDFHLSAILDNVASIIGDPAREKGLAIEIDPDAVPV 826
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++GD +L+Q L N NAVKFT G I++RA
Sbjct: 827 W----LRGDPTRLRQALLNYAGNAVKFTEAGSITLRA----------------------- 859
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF-ENYVQV--- 593
L +N E ++ FEV DTG G+P+ + + +F E++ Q+
Sbjct: 860 --ELLGEN----------------EQGLQVRFEVVDTGIGVPEGELQRLFHEDFAQIANA 901
Query: 594 -KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL IV+ L +MGG++ D E G G+ F F V L
Sbjct: 902 GDRARGGTGLGLSIVRRLAEMMGGEVG-ADSEPGT-GSRFWFTVRL 945
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 23/141 (16%)
Query: 989 RSQAQKPLR----GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
R+ A LR G ++L+A+D+ + R VA L +G V+ ++G A+ + +
Sbjct: 960 RADADADLRARYAGARVLLAEDNPINREVALELLHAVGFAVDTADDGREAVHKAQEQV-- 1017
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEE--KRNQVHIPIIALTAHISGEEA 1102
YD +LMD +MP M+G EA R IR KR PI+A+TA+ E+
Sbjct: 1018 -----------YDLVLMDLQMPQMDGLEAARLIRALPGWKRQ----PILAMTANAFEEDR 1062
Query: 1103 DKTIEAGMDVHLGKPLNRDHL 1123
+AGMD L KP++ + L
Sbjct: 1063 KACEQAGMDGFLPKPVDPEDL 1083
>gi|150007414|ref|YP_001302157.1| two-component hybrid sensor kinase/response regulator
[Parabacteroides distasonis ATCC 8503]
gi|149935838|gb|ABR42535.1| two-component system sensor histidine kinase, with response
regulator receiver domain [Parabacteroides distasonis
ATCC 8503]
Length = 793
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 148/300 (49%), Gaps = 54/300 (18%)
Query: 355 KQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
KQ+ EA + AE+ + KS A SHDIR + I G+ + + + ++N
Sbjct: 265 KQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHVDERERILDCMEKIN 324
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK+E+G++ L E++F+VGELL+D+V + P K + +
Sbjct: 325 GASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVMMQPEIKNKQQTLNIHVK 384
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKP-SAIGNPSLSSSR 531
+ L+ VKGD ++KQ+L N+LSNA+K+T E G I++ K P + IGN
Sbjct: 385 N---LRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKDPHNGIGN------- 434
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
+F FE D G+G+ E +FE +
Sbjct: 435 ---------------------------------YQFVFE--DNGRGMKPEFLDKIFEPFE 459
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
+ + E GTGLG+ I ++++MGGDI+ V+ E G +G+ F ++ L R+ +D
Sbjct: 460 RASDDEIKRIQGTGLGMSISHKIIQMMGGDIK-VESEYG-KGSRFTIDMPLVCRDQKPDD 517
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 89/155 (57%), Gaps = 18/155 (11%)
Query: 985 EDGERSQAQKPLR-------GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
++G++ + +P + GK+IL+ +D+ + R +A + G T++ NG A+
Sbjct: 646 DEGDQPEPIRPFKLSNVDYSGKRILLVEDNELNREIAVEIIGSTGITIDTAINGLDAVHK 705
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
V Q + G Y ILMD +MPIM+GYEATR+IR ++R+ H+PIIA+TA+
Sbjct: 706 VA-----QSEEGF-----YQIILMDIQMPIMDGYEATRQIRSLQRRDIAHMPIIAMTANA 755
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYLH 1131
E+ I+AGM+ HL KP++ LM + KYL
Sbjct: 756 FSEDVTNAIKAGMNYHLAKPIDIGALMGILSKYLQ 790
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 24/145 (16%)
Query: 993 QKP-----LRGKKILVADDSMMLRRVAEIN----LRHLGATVEACENGEAALQLVRSGLN 1043
QKP + G ++LV DD ++A +N LR +G E +G A++ VR
Sbjct: 513 QKPDDKIEVEGLEVLVVDDD----KIACLNTSSCLREIGINSECVYSGSEAIEKVR---- 564
Query: 1044 DQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD 1103
Q L Y +++D +MP MNG E TR+IR + +PII L+A+ E
Sbjct: 565 -QHHLAEKE---YFAVIIDLKMPQMNGIETTRQIR---RFVGADVPIIILSAYDLEEYEA 617
Query: 1104 KTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ E + + KPL + L++ ++
Sbjct: 618 EAKEVKANGFITKPLYKSKLLQVLR 642
>gi|255013997|ref|ZP_05286123.1| two-component hybrid sensor kinase/response regulator [Bacteroides
sp. 2_1_7]
gi|256839663|ref|ZP_05545172.1| two-component system sensor histidine kinase [Parabacteroides sp.
D13]
gi|410101770|ref|ZP_11296698.1| hypothetical protein HMPREF0999_00470 [Parabacteroides sp. D25]
gi|423332095|ref|ZP_17309879.1| hypothetical protein HMPREF1075_01892 [Parabacteroides distasonis
CL03T12C09]
gi|256738593|gb|EEU51918.1| two-component system sensor histidine kinase [Parabacteroides sp.
D13]
gi|409229936|gb|EKN22808.1| hypothetical protein HMPREF1075_01892 [Parabacteroides distasonis
CL03T12C09]
gi|409239568|gb|EKN32352.1| hypothetical protein HMPREF0999_00470 [Parabacteroides sp. D25]
Length = 793
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 148/300 (49%), Gaps = 54/300 (18%)
Query: 355 KQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
KQ+ EA + AE+ + KS A SHDIR + I G+ + + + ++N
Sbjct: 265 KQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHVDERERILDCMEKIN 324
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LL L+N +LD SK+E+G++ L E++F+VGELL+D+V + P K + +
Sbjct: 325 GASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVMMQPEIKNKQQTLNIHVK 384
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKP-SAIGNPSLSSSR 531
+ L+ VKGD ++KQ+L N+LSNA+K+T E G I++ K P + IGN
Sbjct: 385 N---LRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKDPHNGIGN------- 434
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
+F FE D G+G+ E +FE +
Sbjct: 435 ---------------------------------YQFVFE--DNGRGMKPEFLDKIFEPFE 459
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
+ + E GTGLG+ I ++++MGGDI+ V+ E G +G+ F ++ L R+ +D
Sbjct: 460 RASDDEIKRIQGTGLGMSISHKIIQMMGGDIK-VESEYG-KGSRFTIDMPLVCRDQKPDD 517
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 89/155 (57%), Gaps = 18/155 (11%)
Query: 985 EDGERSQAQKPLR-------GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
++G++ + +P + GK+IL+ +D+ + R +A + G T++ NG A+
Sbjct: 646 DEGDQPEPIRPFKLSNVDYSGKRILLVEDNELNREIAVEIIGSTGITIDTAINGLDAVHK 705
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
V Q + G Y ILMD +MPIM+GYEATR+IR ++R+ H+PIIA+TA+
Sbjct: 706 VA-----QSEEGF-----YQIILMDIQMPIMDGYEATRQIRSLQRRDIAHMPIIAMTANA 755
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYLH 1131
E+ I+AGM+ HL KP++ LM + KYL
Sbjct: 756 FSEDVTNAIKAGMNYHLAKPIDIGALMGILSKYLQ 790
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 24/145 (16%)
Query: 993 QKP-----LRGKKILVADDSMMLRRVAEIN----LRHLGATVEACENGEAALQLVRSGLN 1043
QKP + G ++LV DD ++A +N LR +G E +G A++ VR
Sbjct: 513 QKPDDKIEVEGLEVLVVDDD----KIACLNTSSCLREIGINSECVYSGSEAIEKVR---- 564
Query: 1044 DQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD 1103
Q L Y +++D +MP MNG E TR+IR + +PII L+A+ E
Sbjct: 565 -QHHLAEKE---YFAVIIDLKMPQMNGIETTRQIR---RFVGADVPIIILSAYDLEEYEA 617
Query: 1104 KTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ E + + KPL + L++ ++
Sbjct: 618 EAKEVKANGFITKPLYKSKLLQVLR 642
>gi|408793170|ref|ZP_11204780.1| PAS domain S-box protein [Leptospira meyeri serovar Hardjo str.
Went 5]
gi|408464580|gb|EKJ88305.1| PAS domain S-box protein [Leptospira meyeri serovar Hardjo str.
Went 5]
Length = 1164
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 140/307 (45%), Gaps = 71/307 (23%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN----- 413
A + AE+ S KS AN SH+IR L G+ G +L + T L Q+
Sbjct: 645 ARENAEKASQAKSDFLANMSHEIRTPLNGVIGFSDLL---------MRTELNQVQKKYME 695
Query: 414 ---VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ AN LL L+N ILD SK+E+GKM+L +E ++ ELL + ++ A KG+E++L
Sbjct: 696 TVYLSANSLLDLINDILDFSKIESGKMELYKERINIYELLHQIAEIVKHKAYEKGLELIL 755
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+ S + D ++L+QIL NL+ NA+KFT +G I ++
Sbjct: 756 NISPKVP---RNIFVDSLRLRQILLNLIGNALKFTLKGEIQIK----------------- 795
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
++A +D N EF FEV DTG GI E + +FE +
Sbjct: 796 ------------------------ISAEPKDNNEYEFLFEVIDTGIGISPENQDKIFEVF 831
Query: 591 VQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
Q GGTGLGL I L+ L +++ ER RF + + + N
Sbjct: 832 SQADTSTTRQFGGTGLGLSISSKLLNLFDSKMQL----ESERDKGSRF--YFKLTTLADN 885
Query: 647 DNNTQGE 653
+ NT+ E
Sbjct: 886 ERNTEPE 892
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 23/135 (17%)
Query: 1000 KILVADDS---MMLRRVAEINLRHLGATVEACENGEAALQ-LVRSGLNDQRDLGAPHILP 1055
K+++ +D+ MML + A + G + ENG A++ +++ P +
Sbjct: 1043 KVMIVEDNPVNMMLTK-AIVQKSLPGTIIIEAENGALAVENFIQT---------EPQL-- 1090
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA-HISGEEADKTIEAGMDVHL 1114
I MD +MP MNGY+AT+ IR+ E N +PIIALTA +SGEE ++ +E GM+ ++
Sbjct: 1091 ---IFMDVQMPEMNGYDATKAIRKLE--NGKSVPIIALTAGTLSGEE-ERCLECGMNDYI 1144
Query: 1115 GKPLNRDHLMEAIKY 1129
KP+ + E +K+
Sbjct: 1145 SKPVVLKTIAEKMKH 1159
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 13/146 (8%)
Query: 986 DGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQ 1045
D ER+ + + K ++V DD+ V L + G V+ + + AL+++RSG
Sbjct: 884 DNERNTEPELGQIKSVMVLDDNETNLYVIHEMLNYKGIRVDGFRSPKEALEVIRSGTF-- 941
Query: 1046 RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT 1105
YD I+ D MP MNG + + + + N++ P ++L + E K
Sbjct: 942 ----------YDVIISDFNMPEMNGLDFIENLLKTIESNKLKKPYLSLHTSSNDENIYKR 991
Query: 1106 I-EAGMDVHLGKPLNRDHLMEAIKYL 1130
+ G+ L KP+ + L E+++ L
Sbjct: 992 CKDLGVQSILLKPIQTNILYESLEKL 1017
>gi|255034653|ref|YP_003085274.1| ATP-binding protein [Dyadobacter fermentans DSM 18053]
gi|254947409|gb|ACT92109.1| ATP-binding region ATPase domain protein [Dyadobacter fermentans DSM
18053]
Length = 1871
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 140/303 (46%), Gaps = 53/303 (17%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
Q E+KS K FAN SH+IR + I G+ EL + +LE R + + +LL
Sbjct: 1479 QLVEQKSRFKEQFFANMSHEIRTPMTAILGMSELIFDTPLNEKQLEYA-RGIRYSSENLL 1537
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV-VLDPSDGSVLK 479
++N +LD SK+EAGK I + F VG+ +E + + +A KG+E+ + SD S
Sbjct: 1538 AIINDVLDYSKIEAGKFSFINKPFQVGDRMERLGYILRVIAEEKGLELRITVDSDVS--- 1594
Query: 480 FSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSIS 539
+V GD ++L QIL NL NAVKFT G +S+ V
Sbjct: 1595 -PQVIGDPIRLHQILLNLAGNAVKFTENGSVSIHVAV----------------------- 1630
Query: 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG--- 596
RD + F V DTG GI ++K + +FE + ++ +
Sbjct: 1631 ------------------LSRDAGQEQLQFSVADTGIGIAEDKLEYIFETFTRIDDDSNS 1672
Query: 597 -EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKE 655
+ GTGLGL I + LV GG +++ + GT FRF++ I + ++ + +
Sbjct: 1673 RQSGTGLGLFIARKLVEEQGGRMQVTSRVG--HGTEFRFDLTFEICSTLEDHDDPRADVL 1730
Query: 656 LAG 658
L G
Sbjct: 1731 LTG 1733
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHL--GATVEACENGEAALQLVRSGL 1042
ED + +A L G +L+ +D++ + VAE L+ + V +NG ALQ
Sbjct: 1720 EDHDDPRADVLLTGLSVLLVEDNLFNQVVAEETLKKMIRDVRVTVADNGAIALQ------ 1773
Query: 1043 NDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEA 1102
L H +D ILMD +MP+M+GY ATR IR E N +PI+A T++ + EA
Sbjct: 1774 ----KLDETH---FDIILMDVKMPVMDGYTATRAIRARE--NGARVPILAFTSNANPTEA 1824
Query: 1103 DKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+K +AGMD ++ KP+ L I+ L
Sbjct: 1825 EKCRDAGMDDYITKPIEAKKLKYKIRKL 1852
>gi|398997241|ref|ZP_10700070.1| PAS domain S-box [Pseudomonas sp. GM21]
gi|398124458|gb|EJM13968.1| PAS domain S-box [Pseudomonas sp. GM21]
Length = 1251
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 147/318 (46%), Gaps = 60/318 (18%)
Query: 339 SARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVE 398
+ RAA +EM +A Q AE + KS AN SH+IR + I G+ L +
Sbjct: 639 AQRAAAQEME---------QARQLAEDSARIKSEFLANMSHEIRTPMNAIIGMTYLT-LR 688
Query: 399 AGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFH 458
L ++ + LLG++N ILD SK+EAGK+QL DF + +LLE+V+D H
Sbjct: 689 TELSDRQRDYLNKVQSSSRHLLGVINDILDFSKIEAGKLQLEVRDFSLAQLLEEVLDQIH 748
Query: 459 PVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK 518
P KG+++ ++ + +++GD ++L+QIL N LSNAVKFT G I V ++
Sbjct: 749 PRVADKGLDMRINVAADVP---ERLRGDPLRLRQILLNYLSNAVKFTERGQIRVEVSLRH 805
Query: 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
A + + F V D+G G+
Sbjct: 806 AGA-----------------------------------------DDVLLNFSVTDSGIGL 824
Query: 579 PKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
E+ +F+++ Q GGTGLGL I + L LMGG + V GE G+ F F
Sbjct: 825 SSEQLNNMFQSFQQADTSTTRRFGGTGLGLAIAKQLSELMGGQVG-VQSVLGE-GSNFWF 882
Query: 635 NVFLAIREASANDNNTQG 652
V L + +++ D+ G
Sbjct: 883 EVRLLLAQSNVIDDLCDG 900
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 69/121 (57%), Gaps = 15/121 (12%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G ++L+ +D+ + ++VA L+ +G +V+ +G AL + L+ +R YD
Sbjct: 911 GTRVLLVEDNELNQQVAAELLQAVGCSVDIAADGRQAL----NRLSAER---------YD 957
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+ MD +MP+++G EATR +R + + +P++A+TA+ S + D + AGM+ + KP
Sbjct: 958 LVFMDMQMPVLDGLEATRLLRGQPGLST--LPVVAMTANASKRDHDACLAAGMNDFISKP 1015
Query: 1118 L 1118
Sbjct: 1016 F 1016
>gi|182413985|ref|YP_001819051.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
PB90-1]
gi|177841199|gb|ACB75451.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
PB90-1]
Length = 1204
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 124/265 (46%), Gaps = 51/265 (19%)
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVE 433
AN SH+IR + G+ G+ L V+ G E + + + A LL ++N ILD SK+E
Sbjct: 825 LANMSHEIRTPMNGVIGMSNLL-VDTPLGPEQQEYAQAIRHSAEALLAIINDILDVSKLE 883
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGSVLKFSKVKGDRVKLK 491
AGK+QL+ +F + +L+ED V L P A KG+ + L P L GD +++
Sbjct: 884 AGKLQLVPTEFRLDQLVEDAVSLLRPSATAKGLRLKAELSPELPPTL-----LGDANRVR 938
Query: 492 QILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGD 551
Q+L NL+ NAVKFT G + VR P ++ H
Sbjct: 939 QVLLNLIGNAVKFTEHGGVFVRVA---------PEPGATAH------------------- 970
Query: 552 LEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIV 607
D + EV DTG G+P E + +F+ + Q E GGTGLGL I
Sbjct: 971 ---------DSGPVSVRIEVADTGIGVPPEAAERLFQPFTQADESMTRRYGGTGLGLAIS 1021
Query: 608 QSLVRLMGGDIEIVDKENGERGTCF 632
+ LV LMGG I + E G G+ F
Sbjct: 1022 RQLVELMGGQIGVRSPETG--GSVF 1044
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 16/127 (12%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D+ + +R+ L+ LG + + NG LQ L +R YD +L
Sbjct: 1082 VLVAEDNPVNQRLVGAQLKRLGCSADCVANGLLVLQ----ALQQKR---------YDVVL 1128
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MDC+MP ++GY+ R+IR R +PIIA+TAH E +K ++AGMD +L KP+
Sbjct: 1129 MDCQMPELDGYDTARRIRATHSRR---VPIIAMTAHAMQGEREKCLDAGMDDYLAKPVRL 1185
Query: 1121 DHLMEAI 1127
L +A+
Sbjct: 1186 PDLTQAL 1192
>gi|152985475|ref|YP_001347049.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PA7]
gi|150960633|gb|ABR82658.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PA7]
Length = 918
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 148/298 (49%), Gaps = 61/298 (20%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELETNLR 410
+ +A +QA ++ KS A SH+IR L G+ G+++L ++ G + +ET
Sbjct: 392 FRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAACVET--- 448
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ N L+ ++N ILD +++E+GK+QL DFD+ ELL D + LF A K + + L
Sbjct: 449 -IASSGNALMSVINDILDYARIESGKLQLERIDFDLEELLSDTLALFGAQAREKRLRLHL 507
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
G ++ GD +L+Q+L+NLL NA+KFT+EGH+++R V++
Sbjct: 508 GLDRGVP---RRLNGDPTRLRQVLTNLLGNALKFTAEGHVALR--VQR------------ 550
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME-FTFEVDDTGKGIPKEKRKTVFEN 589
+ DE E + V D+G GI + + T+FE+
Sbjct: 551 ----------------------------RFDEAGRERLLYSVSDSGIGISAQAQATLFES 582
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q GG+GLGL I + LV++MGG IE+ + E G RF+V L + A
Sbjct: 583 FSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV----SSEPGKGTRFSVDLPLSPA 636
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 12/131 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + + V L G V NG AL L D + IL
Sbjct: 791 ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALD---EYLRDPNGI--------QLIL 839
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD EMP M+G+EATR IR EE+ R+ +PI+ALTAHI E IEAGMD +LGKP++
Sbjct: 840 MDGEMPEMDGFEATRLIRREERARDWPRVPIVALTAHILDEHRQAGIEAGMDAYLGKPVD 899
Query: 1120 RDHLMEAIKYL 1130
R L ++ L
Sbjct: 900 RTELYATLERL 910
>gi|423067063|ref|ZP_17055853.1| histidine kinase [Arthrospira platensis C1]
gi|406711349|gb|EKD06550.1| histidine kinase [Arthrospira platensis C1]
Length = 517
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 154/354 (43%), Gaps = 66/354 (18%)
Query: 286 SQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARK 345
S +++ G+ +VY PR + +H ++ I +GV + + ++ AR+
Sbjct: 55 SGYQLWGLLAVYQNYHPRSWTTAEIHTVTQ------IGSQLGVAVQQAELLAQTQEQARQ 108
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
+A + A+ + KS AN SH++R L I G +L E
Sbjct: 109 ----------LQQAKEIADAANRAKSEFLANMSHELRTPLNAILGFAQLMSTNQNLAPEK 158
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
++ +N LLGL+N IL+ S++EAG L FD+ + L+ + D F A K
Sbjct: 159 RQHIEIINRSGEHLLGLINDILEMSRIEAGGATLQVNAFDLYDFLKSLEDFFKLRATSKN 218
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP 525
+ ++ + G + +K D KL+Q+L NLL NA+KFT EG ++VR
Sbjct: 219 LHLIFERPQGLI---RYIKADDKKLRQVLINLLVNAIKFTDEGSVTVRV----------- 264
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
+ Q + + FEV+DTG GI E +
Sbjct: 265 -------------------------------SHQNQDTSDILKFEVEDTGLGIAPEDCEG 293
Query: 586 VFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+FE + Q + G G+GLGL I Q V LMGG+I + N +G+ F F +
Sbjct: 294 LFEAFAQTETGLNASEGSGLGLAIAQQFVTLMGGEITVRSCLN--QGSTFSFTI 345
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D R + L LG +V A NG A+ + + P D I
Sbjct: 376 RILVVEDRESNRLLLVELLSVLGFSVRAANNGSEAIAIWQEW--------NP-----DLI 422
Query: 1060 LMDCEMPIMNGYEATRKIREEE-KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMD MP++NGYEATR+IR + R+ V IIALTA E+ ++ G + L KP
Sbjct: 423 LMDMRMPVVNGYEATRQIRSQPGGRDTV---IIALTASAFEEQRQDIMKVGCNDLLRKPF 479
Query: 1119 NRDHLMEAI-KYL 1130
R L+ + +YL
Sbjct: 480 QRGELLSKLSQYL 492
>gi|350564428|ref|ZP_08933246.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium aerophilum
AL3]
gi|349777906|gb|EGZ32268.1| multi-sensor hybrid histidine kinase [Thioalkalimicrobium aerophilum
AL3]
Length = 1511
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 137/283 (48%), Gaps = 50/283 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA QQAE S+ KS AN SH+IR + GI GL EL E S+L L +++
Sbjct: 906 EAKQQAEASSLAKSAFLANMSHEIRTPMNGIIGLSELALQEQSV-SKLHEKLNKIHRSGR 964
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLG++N +LD SK+EAGK++L + F + +++D+ LF V+ +L D S
Sbjct: 965 LLLGVINDVLDFSKIEAGKLELQTDAFSIHHVVDDISHLFMTGVQDGQVQFML---DDSA 1021
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ S D ++L+Q+L NLL NA KFT +G + L+ S H Q
Sbjct: 1022 MVHSHFCADELRLRQVLLNLLGNAFKFTEQGIV---------------KLTISEHNDEQG 1066
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
+ L F V DTG GI K+++ +FE + Q +
Sbjct: 1067 QAWL--------------------------DFIVSDTGLGISKQQQTAIFEPFQQADTSI 1100
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL I Q LV LM G ++ + GE G+ F F++
Sbjct: 1101 TRQYGGTGLGLVISQRLVSLMDGVGIHLESDLGE-GSKFSFSI 1142
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 18/132 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ +D+ + + V L HL V ENG+ A+ LVR +D I
Sbjct: 1171 QVLLVEDNEINQEVILNQLDHLNLDVVLAENGQQAVDLVREH-------------RFDLI 1217
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MPIM+GY+ATR IRE + PI+ALTA E+ K + AGM+ HL KP+
Sbjct: 1218 LMDIQMPIMDGYQATRAIREFDSDT----PIVALTAAAMIEDKKKALAAGMNEHLSKPIQ 1273
Query: 1120 RDHLMEAI-KYL 1130
L I +YL
Sbjct: 1274 LQELRSLIGRYL 1285
>gi|147789780|emb|CAN76309.1| hypothetical protein VITISV_028333 [Vitis vinifera]
Length = 1400
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 174/356 (48%), Gaps = 39/356 (10%)
Query: 322 IVMTVGVLISMLTF--VFKSA--RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANA 377
I +VGVL+ L +F +A R A+ E + ME +AE + KS A
Sbjct: 660 ITASVGVLVITLLVGHIFHAAINRIAKVE----GDYRQMMELKVRAEAADVAKSQFLATV 715
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKM 437
SH+IR + G+ G++++ +++G + + + DL+ L+N +LD +K+E+G++
Sbjct: 716 SHEIRTPMNGVLGMLKM-LMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRL 774
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
+L FD+ L++V+ LF + KG+E+ + SD V +F V GD + +QI++NL
Sbjct: 775 ELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISD-QVPEF--VIGDPGRFRQIITNL 831
Query: 498 LSNAVKFTSE-GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVN 556
+ N++KFT + GHI V + +G P L QS++ + + + L
Sbjct: 832 VGNSIKFTHDKGHIFVSVHLAD-EVVGPPDLRDEV--LRQSLNIVHDSSNNSYNTLSGFP 888
Query: 557 AAQRDE-----------NAMEFT------FEVDDTGKGIPKEKRKTVFENYVQVKEGE-- 597
R + ++ME T V+DTG GIP E + +F ++Q
Sbjct: 889 VVNRWKSWEKFKKLXCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSR 948
Query: 598 --GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
GGTG+GL I + LV LMGG+I + E G G+ F F V E S D Q
Sbjct: 949 TYGGTGIGLSISKRLVDLMGGEIGF-ESEPGT-GSTFSFTVAFTKGETSLLDTKQQ 1002
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 38/170 (22%)
Query: 987 GERSQAQ--KPL------RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV 1038
G+R QA KPL R K+ILV DD+ + RRVAE L+ GA V ++G+AAL ++
Sbjct: 1150 GKRKQANRGKPLTLGNLLREKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLML 1209
Query: 1039 RSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQ------------ 1085
+ PH +D MD +MP M+G++AT++IR E K N+
Sbjct: 1210 K----------PPH--NFDACFMDLQMPEMDGFKATQEIRRMESKVNERIKSGEVSIEMF 1257
Query: 1086 -----VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
H PI+A+TA + ++ ++ GMD ++ KP D L A+ +
Sbjct: 1258 ANVAYWHTPILAMTADVIQANNEECMKCGMDGYVAKPFEEDQLYSAVAHF 1307
>gi|359458299|ref|ZP_09246862.1| two-component hybrid sensory histidine kinase [Acaryochloris sp.
CCMEE 5410]
Length = 691
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 149/310 (48%), Gaps = 50/310 (16%)
Query: 336 VFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELC 395
+ + + R++ L A A QQA + + KS+ N SH++R L + G +L
Sbjct: 186 IVANQQIERQQQELIAQNQALTIAKQQAVKANQAKSVFLGNMSHELRTPLNAVLGYTQLL 245
Query: 396 YVEAGPGS---ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLED 452
E S ELET +N C LL L+N +LD S++++G++ L + F+ ELL+
Sbjct: 246 AREPQLQSFTKELET----INRCGKHLLALINDVLDLSRIDSGQVVLNIDTFNFHELLKT 301
Query: 453 VVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISV 512
+ D++ A KG++ L+ GS L V+ D KL+Q+L NLLSNA+KFT +GHI+
Sbjct: 302 LKDIWTTKAQHKGLDYQLEW--GSDLP-HYVRTDEGKLRQVLMNLLSNAIKFTEQGHITF 358
Query: 513 RACVKKPSAIGN--PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFE 570
R + N P L + H +L FE
Sbjct: 359 RIHQTTVESKLNEEPYLPLTPHYWL--------------------------------NFE 386
Query: 571 VDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENG 626
V D+G GI + + +F ++Q ++ + GTGLGL I V LMGG++ +
Sbjct: 387 VRDSGPGISVSELEHIFHPFIQGEQARSVVDEGTGLGLAISHQFVSLMGGNLSVSSSLGA 446
Query: 627 ERGTCFRFNV 636
G+CF+F+V
Sbjct: 447 --GSCFKFSV 454
>gi|94269400|ref|ZP_01291450.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93451231|gb|EAT02132.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 539
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 130/285 (45%), Gaps = 51/285 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + E S KS AN SH++R + ITG EL E E + R + A
Sbjct: 185 QANARLEESSRLKSEFLANMSHELRTPMNAITGFAELL-AETPLNQEQDEYCRTIRQAAA 243
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N ILD +K+EAGK+ L F + ELLE V +F A +KG+E+ + +G
Sbjct: 244 ALLNLINDILDLAKIEAGKLDLETVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGLP 303
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++GD +L+Q+L NLL NA+KFT +G + + +A
Sbjct: 304 ---DTLRGDSHRLRQVLINLLGNAIKFTEQGGVELEVAAGSTAA---------------- 344
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+ + F V D+G GI + + +FE + Q
Sbjct: 345 -------------------------DKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGST 379
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + LV LMGG IE+ ++ +G+ F F + L
Sbjct: 380 TRRFGGTGLGLAICRQLVELMGGQIEVSSQQG--KGSTFSFEIEL 422
Score = 39.7 bits (91), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERSQAQK------PLRG---KKILVADDSMMLRRVA 1014
++ + G+GS+ + E+E E + P+ G ++L+ +D+ + +R+A
Sbjct: 404 IEVSSQQGKGSTFSFEIELERESAAKKPPPAPATVPGPVAGDGVSRVLLVEDNPVNQRLA 463
Query: 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074
+ L G V +G AL+ + + ++ + MD +MP ++G EAT
Sbjct: 464 SLLLAKQGCQVTVAGDGRQALEKL-------------AVQEFELVFMDIQMPRLDGLEAT 510
Query: 1075 RKIREEE 1081
R++RE E
Sbjct: 511 RRLRELE 517
>gi|34496337|ref|NP_900552.1| sensor/response regulator hybrid protein [Chromobacterium violaceum
ATCC 12472]
gi|34330295|gb|AAQ58556.2| probable sensor/response regulator hybrid protein [Chromobacterium
violaceum ATCC 12472]
Length = 902
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 143/288 (49%), Gaps = 51/288 (17%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K +A ++AE + KS AN SH+IR + I GL L + G + L++++
Sbjct: 153 KLKQAMEEAESATRAKSDFLANMSHEIRTPMNAIIGLAHLA-LRTGLDPKQRDYLQKIHN 211
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
LLG++N ILD SK+EAGK+ L +FD+ +L+++ L A KG+E++ D
Sbjct: 212 SGKHLLGIINDILDFSKIEAGKLDLENAEFDLERVLDNLAALLGEKAEAKGLELIFDIGP 271
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
G L S + GD ++L QIL N +NAVKFT G ++VRA
Sbjct: 272 G--LDRSLI-GDPLRLGQILINYANNAVKFTERGEVTVRA-------------------- 308
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+ ++ RGD ++ FEV DTG G+ E++ +F+++ Q
Sbjct: 309 ---------RCREERGD------------SLLLHFEVSDTGIGLSAEQKAKLFQSFQQAD 347
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + L +MGG++ VD E G +G+ F F L
Sbjct: 348 TSTSRKYGGTGLGLAISRKLAEMMGGEVG-VDSEPG-KGSTFWFTARL 393
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 15/134 (11%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
PLRG ++L+A+D+ + ++VA L V NGE AL L +
Sbjct: 554 PLRGMRVLLAEDNELNQQVATELLSAADIEVTVASNGEEALSLAEA-------------Q 600
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
P+D LMD +MP+M+G EATR++R + PI+A+TA+ + ++ +EAGM+ H+
Sbjct: 601 PFDLALMDMQMPVMDGLEATRRLRRLASWGKR--PILAMTANAMSGDRERCLEAGMNDHV 658
Query: 1115 GKPLNRDHLMEAIK 1128
KP++ D L A+K
Sbjct: 659 TKPIDPDKLFAALK 672
Score = 47.4 bits (111), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 10/135 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+R ++ LV DDS R + LR + V+ E+GE AL+ V D
Sbjct: 408 MRNRRALVVDDSRAAREILAEQLRGMTFRVDEAEDGEQALERVEQAERDGD--------R 459
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
Y+ + +D MP M+G EA R++ + + H + +T + E +AG+++ L
Sbjct: 460 YEVVFLDWRMPRMDGIEAARRLMRHDAALRPH--RVMVTGYGREEVFRLAEDAGIEMTLI 517
Query: 1116 KPLNRDHLMEAIKYL 1130
KP++ L ++ L
Sbjct: 518 KPVSASVLFDSTMRL 532
>gi|162458745|ref|NP_001105858.1| LOC732762 [Zea mays]
gi|89242033|dbj|BAE80687.1| histidine kinase [Zea mays]
Length = 995
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 169/357 (47%), Gaps = 47/357 (13%)
Query: 319 ILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANAS 378
+ +I M VG ++ + + + ++M E +QAE + KS A S
Sbjct: 342 VFVICMLVGYIVGAAWSRYDNVKEDCRKME---------ELKKQAEAADVAKSQFLATVS 392
Query: 379 HDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQ 438
H+IR + G+ G++++ ++ S + VC L+ L+N +LD +K+EAGK+
Sbjct: 393 HEIRTPMNGVLGMLDM-LLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLD 451
Query: 439 LIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLL 498
L FD+ +L+DV+ LF + KG+E+ + S+ V + + GD + +QI++NL+
Sbjct: 452 LESVPFDLRSILDDVISLFSSKSREKGIELAVYVSE-RVPEL--LLGDPGRFRQIITNLV 508
Query: 499 SNAVKFTSEGHISVRACVKKPSAIGN-PSLSSSRHGF---------------LQSISCLF 542
N++KFT GHI V+ + S + P + S +G L ++S
Sbjct: 509 GNSIKFTERGHIFVQVHLADHSNLATEPKVESVANGMNGHKDEKTAVATSVSLNTLSG-- 566
Query: 543 YKNKKARGDLEAVN---AAQRDENAME-------FTFEVDDTGKGIPKEKRKTVFENYVQ 592
++ +R E + +++E E V+DTG GIP + + VF ++Q
Sbjct: 567 FEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQ 626
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
GGTG+GL I + LV LMGG I V + + G+ F F L + SA
Sbjct: 627 ADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPH--VGSTFTFTAALQRCDRSA 681
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 35/191 (18%)
Query: 961 SVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRG----KKILVADDSMMLRRVAEI 1016
SV+ K +SG + ++ I + ER L G K ILV DD+ + RVA
Sbjct: 808 SVITKPLKASGLAACLFQTLGITQSSNERRDNSGSLHGLLLGKNILVVDDNKVNLRVAAG 867
Query: 1017 NLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076
L+ GA VE E+G+ AL L PH + LMD +MP M+G+EAT++
Sbjct: 868 TLKKFGAKVECVESGKDALA----------SLQVPH--KFHLCLMDIQMPEMDGFEATKQ 915
Query: 1077 IRE-EEKRNQ------------------VHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
IR E K N+ H+P++A+TA + ++ + GMD ++ KP
Sbjct: 916 IRAMEAKANEQAVACDDSETDGATRAARWHLPVLAMTADVIQATHEECTKYGMDGYVTKP 975
Query: 1118 LNRDHLMEAIK 1128
L +A++
Sbjct: 976 FEEKQLFQALQ 986
>gi|414872484|tpg|DAA51041.1| TPA: putative histidine kinase family protein [Zea mays]
Length = 997
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 169/357 (47%), Gaps = 47/357 (13%)
Query: 319 ILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANAS 378
+ +I M VG ++ + + + ++M E +QAE + KS A S
Sbjct: 344 VFVICMLVGYIVGAAWSRYDNVKEDCRKME---------ELKKQAEAADVAKSQFLATVS 394
Query: 379 HDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQ 438
H+IR + G+ G++++ ++ S + VC L+ L+N +LD +K+EAGK+
Sbjct: 395 HEIRTPMNGVLGMLDM-LLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLD 453
Query: 439 LIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLL 498
L FD+ +L+DV+ LF + KG+E+ + S+ V + + GD + +QI++NL+
Sbjct: 454 LESVPFDLRSILDDVISLFSSKSREKGIELAVYVSE-RVPEL--LLGDPGRFRQIITNLV 510
Query: 499 SNAVKFTSEGHISVRACVKKPSAIGN-PSLSSSRHGF---------------LQSISCLF 542
N++KFT GHI V+ + S + P + S +G L ++S
Sbjct: 511 GNSIKFTERGHIFVQVHLADHSNLATEPKVESVANGMNGHKDEKTAVATSVSLNTLSG-- 568
Query: 543 YKNKKARGDLEAVN---AAQRDENAME-------FTFEVDDTGKGIPKEKRKTVFENYVQ 592
++ +R E + +++E E V+DTG GIP + + VF ++Q
Sbjct: 569 FEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQ 628
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
GGTG+GL I + LV LMGG I V + + G+ F F L + SA
Sbjct: 629 ADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPH--VGSTFTFTAALQRCDRSA 683
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 35/191 (18%)
Query: 961 SVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRG----KKILVADDSMMLRRVAEI 1016
SV+ K +SG + ++ I + ER L G K ILV DD+ + RVA
Sbjct: 810 SVITKPLKASGLAACLFQTLGITQSSNERRDNSGSLHGLLLGKNILVVDDNKVNLRVAAG 869
Query: 1017 NLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076
L+ GA VE E+G+ AL L PH + LMD +MP M+G+EAT++
Sbjct: 870 TLKKFGAKVECVESGKDALA----------SLQVPH--KFHLCLMDIQMPEMDGFEATKQ 917
Query: 1077 IRE-EEKRNQ------------------VHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
IR E K N+ H+P++A+TA + ++ + GMD ++ KP
Sbjct: 918 IRAMEAKANEQAVACDDSETDGATRAARWHLPVLAMTADVIQATHEECTKYGMDGYVTKP 977
Query: 1118 LNRDHLMEAIK 1128
L +A++
Sbjct: 978 FEEKQLFQALQ 988
>gi|428221825|ref|YP_007105995.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
gi|427995165|gb|AFY73860.1| PAS domain S-box [Synechococcus sp. PCC 7502]
Length = 1433
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 149/307 (48%), Gaps = 43/307 (14%)
Query: 351 ASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR 410
A+L+ +A QQAE + KS AN SH++R L GI G ++ + + + L
Sbjct: 927 ANLLALEQAKQQAEAANQAKSTFLANMSHELRTPLNGILGYAQIFINDPDLSEDHKQGLE 986
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ C N LLGL++ ILD +K+EA +++L+ + D+ + L VV + A K +
Sbjct: 987 IIYQCGNHLLGLISEILDLAKIEAHRLELVLSEVDLAQFLLGVVQICEFKAEEKNLIFQY 1046
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+P+ ++V D +L+QIL NLL NA+KFT +G +++R P++
Sbjct: 1047 EPATNLP---ARVVIDEQRLRQILLNLLGNAIKFTDQGTVTLRVEPISPNS--------- 1094
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+S K K R F + DTG+GI + + +F +
Sbjct: 1095 -----ESEDTQLTKIHKIR-------------------FAIADTGRGIDPKNLQQIFIPF 1130
Query: 591 VQVKEGEG---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
QV + GTGLGL I Q LV +MG I++ + N RG+CF F+ L +R+ A +
Sbjct: 1131 EQVGDRRSRPEGTGLGLAISQKLVAMMGSTIQVTTELN--RGSCFWFD--LDLRQGRAIE 1186
Query: 648 NNTQGEK 654
T +K
Sbjct: 1187 PQTLIDK 1193
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 74/137 (54%), Gaps = 18/137 (13%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R ILV DD ++ R V + L LG T+ ENG + + ++ P
Sbjct: 1206 RRLTILVVDDRLVNRLVLKRLLEPLGFTILEAENGNQGIIMAQTS-------------PI 1252
Query: 1057 DYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D I+ D MP ++G+E TR++R E +N +PI+AL+A ++ E K++E G + L
Sbjct: 1253 DAIIADLVMPELDGWEMTRRLRTIPEFQN---MPILALSASVTESEKIKSLEVGFNDFLH 1309
Query: 1116 KPLNRDHLMEAIK-YLH 1131
KP+N + L+E ++ YLH
Sbjct: 1310 KPINSNLLLEKLQTYLH 1326
>gi|149280709|ref|ZP_01886819.1| Signal transduction histidine kinase [Pedobacter sp. BAL39]
gi|149228533|gb|EDM33942.1| Signal transduction histidine kinase [Pedobacter sp. BAL39]
Length = 536
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 145/308 (47%), Gaps = 53/308 (17%)
Query: 331 SMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITG 390
S + V RK + L A + ++A +QAE+ K AN SH+IR + GI G
Sbjct: 121 SFIQLVRNEREIKRKNLELEAYQKELIKAKEQAEQGKRIKENFLANMSHEIRTPINGIIG 180
Query: 391 LIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELL 450
L L + + E +R + + ++ LLG++N ILD SK+E+GK ++ + DV +
Sbjct: 181 LASLLK-KTTLSPDQEEMIRLLEISSDSLLGVINDILDLSKIESGKFKINRAETDVIKTC 239
Query: 451 EDVVDLFHPVAMRKGVEVV--LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG 508
DV +L AM K ++++ DP+ ++ + D ++L QIL NL+ NA+KFT+ G
Sbjct: 240 TDVTNLLRIRAMEKKLDLITDYDPALPNL-----IMADSLRLNQILMNLIGNAIKFTASG 294
Query: 509 HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT 568
++++ V A + N ++
Sbjct: 295 SVTLK-----------------------------------------VEALDKKGNNIQVR 313
Query: 569 FEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKE 624
F V DTG GI K+K +FE + Q E GGTGLGL IV++L L GG +E+ +E
Sbjct: 314 FSVIDTGIGIAKDKIDKIFETFEQADEQTTIKFGGTGLGLSIVKNLAELKGGILEVFSEE 373
Query: 625 NGERGTCF 632
CF
Sbjct: 374 GHGSTFCF 381
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
G +LVA+D+ + + + L+ G + ENG+ AL+L+ ND
Sbjct: 405 FEGVNVLVAEDNPINKFLIIRVLKEWGVKPDVVENGKEALELLTK--ND----------- 451
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD ILMD MP+MNG EA + IRE + IPII +A + + IEAG + +
Sbjct: 452 YDIILMDTFMPVMNGLEAIKLIREGYAPGKEGIPIITFSAAVMESDKQTAIEAGANDVVS 511
Query: 1116 KPLNRDHLMEAI 1127
KP D L E I
Sbjct: 512 KPFEVDVLHEKI 523
>gi|383791538|ref|YP_005476112.1| signal transduction histidine kinase [Spirochaeta africana DSM
8902]
gi|383108072|gb|AFG38405.1| signal transduction histidine kinase [Spirochaeta africana DSM
8902]
Length = 866
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 167/328 (50%), Gaps = 51/328 (15%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
+V+++G++ S+ + AR A++ + A + +EA QQAE S+ KS AN SH+I
Sbjct: 421 VVLSIGLVRSVHATL--EARVAQRTSTIRAQQAELIEAKQQAEAASIAKSEFLANMSHEI 478
Query: 382 RAALAGITGLIELCYVEAGPGSELETN-LRQMNVCANDLLGLLNSILDTSKVEAGKMQLI 440
R L G+ G EL +E P +E + L+ ++ A+ L+ ++ ILD SK+EAG+++L
Sbjct: 479 RTPLQGVIGFTEL--LENTPLNEKQQKFLQHASLSAHSLMEVITDILDFSKIEAGRLELD 536
Query: 441 EEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSN 500
DV E++ V + A ++G+++ L+ D + D V+L+Q++ NLLSN
Sbjct: 537 PVQIDVIEVVRQSVGMMQMRAAQEGLDLQLELQDDMP---AVATIDPVRLRQVVVNLLSN 593
Query: 501 AVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVN--AA 558
A+KFT +G + VR + ++++K GD A A+
Sbjct: 594 AIKFTEQGSVRVR---------------------------MSWESRK--GDTAAAQSTAS 624
Query: 559 QRDENAM------EFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQ 608
D+++ + EV+DTG GIP+ +R +F+ + Q GGTGLGL I
Sbjct: 625 MHDQSSGSAPEPGRYWIEVEDTGIGIPEAQRDKLFKAFSQADSSTTRRYGGTGLGLVISN 684
Query: 609 SLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ MGG I + + +G+ F F V
Sbjct: 685 HIAEKMGGRIRL--ESTPGKGSRFWFCV 710
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKR-NQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+ MD MP M+G ATR IRE E ++ H+PI+ALTA + E D+ + AGMD L KP
Sbjct: 786 VFMDMLMPEMDGIAATRCIREAEAEFDRPHVPIVALTARVQKEVRDQCLAAGMDDFLSKP 845
Query: 1118 LNRDHLME-AIKYL 1130
+ + + E A +YL
Sbjct: 846 IRAEQVREIARRYL 859
>gi|418710621|ref|ZP_13271390.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410769062|gb|EKR44306.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
Length = 804
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 158/320 (49%), Gaps = 55/320 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 464
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K N S SS
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQK------NISKSSV------ 569
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++EFT V D+G GIP EK+K VFE + Q
Sbjct: 570 ---------------------------SIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 600
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 601 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 658
Query: 653 EK----ELAGGDSAAGDTQL 668
EK E + D A T++
Sbjct: 659 EKTKDLEKSFQDVVAKSTRI 678
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++
Sbjct: 662 KDLEKSFQDVVAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE-------- 713
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+ L A +D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 714 RMQLEA-----FDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 767
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 768 YISKGMNDCLTKPLD 782
>gi|421105997|ref|ZP_15566573.1| 7TM diverse intracellular signaling [Leptospira kirschneri str. H2]
gi|410008719|gb|EKO62379.1| 7TM diverse intracellular signaling [Leptospira kirschneri str. H2]
Length = 804
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 143/284 (50%), Gaps = 51/284 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 406 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 464
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL P+A +K ++ L+
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRLE-GKSE 523
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ ++ V GD ++L+QIL NL N +KFT+ G + ++ K S
Sbjct: 524 IQEY--VYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 565
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+D ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 566 -----------------------KDGVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 600
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GG+GLGL I + LV L GG +++ KE +G+ F F +
Sbjct: 601 TARKFGGSGLGLSITKQLVELQGGVLKLESKEG--KGSKFTFTI 642
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++ R L
Sbjct: 662 KDLEKSFQDVVSKSARILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE--RMQLE- 718
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 719 ----------TFDIILMDIHMPEVDGIEATKWIRSKNQNSKFPI-IIALTADAIESSREK 767
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 768 YISKGMNDCLTKPLD 782
>gi|94265011|ref|ZP_01288780.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93454500|gb|EAT04785.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 581
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 130/285 (45%), Gaps = 51/285 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + E S KS AN SH++R + ITG EL E E + R + A
Sbjct: 185 QANARLEESSRLKSEFLANMSHELRTPMNAITGFAELL-AETPLNQEQDEYCRTIRQAAA 243
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N ILD +K+EAGK+ L F + ELLE V +F A +KG+E+ + +G
Sbjct: 244 ALLNLINDILDLAKIEAGKLDLEAVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGLP 303
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++GD +L+Q+L NLL NA+KFT +G + + +A
Sbjct: 304 ---DTLRGDSHRLRQVLINLLGNAIKFTEQGGVELEVAAGSTAA---------------- 344
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+ + F V D+G GI + + +FE + Q
Sbjct: 345 -------------------------DKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGST 379
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + LV LMGG IE+ ++ +G+ F F + L
Sbjct: 380 TRRFGGTGLGLAICRQLVELMGGQIEVSSQQG--KGSTFSFEIEL 422
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 34/186 (18%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERSQAQK------PLRG---KKILVADDSMMLRRVA 1014
++ + G+GS+ + E+E E + P+ G ++L+ +D+ + +R+A
Sbjct: 404 IEVSSQQGKGSTFSFEIELERESAAKKPPPAPATVPGPVAGDGVSRVLLVEDNPVNQRLA 463
Query: 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074
+ L G V +G AL+ + + ++ + MD +MP ++G EAT
Sbjct: 464 SLLLAKQGCQVTVAGDGRQALEKL-------------AVQEFELVFMDIQMPRLDGLEAT 510
Query: 1075 RKIREEEKRNQVH------------IPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDH 1122
R++RE E +P++ LTAH E+ + AGMD L KP+ +
Sbjct: 511 RRLRELEADPAARAAHAALARRTTPLPVVGLTAHARKEDEEACYAAGMDGFLSKPIVKAK 570
Query: 1123 LMEAIK 1128
L+ ++
Sbjct: 571 LLAVLQ 576
>gi|417786027|ref|ZP_12433724.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
C10069]
gi|418702445|ref|ZP_13263353.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Bataviae str. L1111]
gi|421083555|ref|ZP_15544429.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
HAI1594]
gi|421101425|ref|ZP_15562037.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|409950856|gb|EKO05378.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
C10069]
gi|410368597|gb|EKP23973.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433916|gb|EKP78253.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
HAI1594]
gi|410758614|gb|EKR24843.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 804
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 158/320 (49%), Gaps = 55/320 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 464
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K N S SS
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQK------NISKSSV------ 569
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++EFT V D+G GIP EK+K VFE + Q
Sbjct: 570 ---------------------------SIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 600
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 601 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 658
Query: 653 EK----ELAGGDSAAGDTQL 668
EK E + D A T++
Sbjct: 659 EKTKDLEKSFQDVVAKSTRI 678
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++
Sbjct: 662 KDLEKSFQDVVAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE-------- 713
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+ L A +D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 714 RMQLEA-----FDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 767
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 768 YISKGMNDCLTKPLD 782
>gi|57900198|dbj|BAD88305.1| putative histidine kinase 2 [Oryza sativa Japonica Group]
gi|57900221|dbj|BAD88327.1| putative histidine kinase 2 [Oryza sativa Japonica Group]
Length = 866
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 171/356 (48%), Gaps = 50/356 (14%)
Query: 320 LLIVMTVGVL-ISMLT-FVFKSA--RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFA 375
L I + G L I++LT +F++ R A+ E K E ++AE + KS A
Sbjct: 232 LAITSSFGTLVIALLTGHIFQATVHRIAKVE----DDFHKMSELKKRAEDADVAKSQFLA 287
Query: 376 NASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAG 435
SH+IR + G+ G++++ ++ + + +R L+ L+N +LD +K+E+G
Sbjct: 288 TVSHEIRTPMNGVLGMLQM-LMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESG 346
Query: 436 KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILS 495
K++L FD+ + +D++ LF A KG+E+ + SD V + + GD +++QI++
Sbjct: 347 KLELETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSD-QVPQI--LIGDPGRIRQIIT 403
Query: 496 NLLSNAVKFTSEGHI--------SVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKK 547
NL+ N++KFT GHI V +C++ + I N + S Y
Sbjct: 404 NLVGNSIKFTERGHIYLTVHVVEEVMSCLEVETGIQNTNTLSG------------YPVAN 451
Query: 548 ARGDLEAVNAAQRDENAMEFTF------------EVDDTGKGIPKEKRKTVFENYVQVKE 595
R E++ R+ ++ E +F V+DTG GIP E + VF ++QV
Sbjct: 452 RRCSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGP 511
Query: 596 G----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
GGTG+GL I + LV LM G+I K + G+ F F L ND
Sbjct: 512 SIARIHGGTGIGLSISKCLVGLMKGEIGFASKPH--VGSTFTFTAVLMRAHCKGND 565
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L K+I+V DD+++ +VA L+ GA V ++G+ A+ L++ PH
Sbjct: 719 LHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLK----------PPH--N 766
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR-----------------NQVHIPIIALTAHIS 1098
+D MD +MP M+G+EATR+IR E+ + PI+A+TA +
Sbjct: 767 FDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWRTPILAMTADVI 826
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ +++ MD ++ KP + L +
Sbjct: 827 QATHEECLKSEMDGYVSKPFEGEQLYSEV 855
>gi|418715572|ref|ZP_13275693.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
08452]
gi|410788473|gb|EKR82191.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
08452]
Length = 804
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 158/320 (49%), Gaps = 55/320 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 464
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K N S SS
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQK------NISKSSV------ 569
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++EFT V D+G GIP EK+K VFE + Q
Sbjct: 570 ---------------------------SIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 600
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 601 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 658
Query: 653 EK----ELAGGDSAAGDTQL 668
EK E + D A T++
Sbjct: 659 EKTKDLEKSFQDVVAKSTRI 678
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++ R L
Sbjct: 662 KDLEKSFQDVVAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE--RMQLE- 718
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 719 ----------AFDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 767
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 768 YISKGMNDCLTKPLD 782
>gi|381161140|ref|ZP_09870371.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380877376|gb|EIC19469.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1633
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 149/305 (48%), Gaps = 59/305 (19%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E T++A S KS AN SH+IR L GI G+++L + +E + Q A
Sbjct: 1245 EITEKALAASHAKSAFLANMSHEIRTPLNGIVGMLDLLKM-TDLSAEQDDYAVQATHSAK 1303
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDG 475
L LL ILD S+VEAG+++L +E F + ELL+ ++ LF P A +KG+E++ LDP
Sbjct: 1304 RLTRLLTDILDLSRVEAGQLELKQESFVLTELLDAILQLFEPAAKQKGLELLIKLDPDAP 1363
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
L GD ++ QIL NLL NA+KFT G +S+ A SL + R G L
Sbjct: 1364 RCL-----SGDATRVHQILGNLLGNAIKFTPSGRVSLEAL----------SLGNGRRGEL 1408
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK- 594
+ F + DTG G+ ++K +FE ++QV+
Sbjct: 1409 PML------------------------------FILKDTGIGLTEDKLDGLFEPFLQVEN 1438
Query: 595 ---EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE-----ASAN 646
+ G GLGL IV+ LV+ M G I V E G RGT F ++ A E ++A
Sbjct: 1439 NFTKQHDGVGLGLSIVKRLVQQMRGSI-CVGSELG-RGTEFVLSLPFACVEDVQVMSAAV 1496
Query: 647 DNNTQ 651
++N Q
Sbjct: 1497 EDNEQ 1501
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 18/145 (12%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
ED E Q G ++L +D + + V L G V ENG AL+++R+
Sbjct: 1497 EDNE----QDCFAGLRVLAVEDEKVNQIVIARLLEKKGCKVATAENGREALEVLRAE--- 1549
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEAD 1103
YD +LMD +MP M+G EAT+ IR + +IPIIALTA + +
Sbjct: 1550 ----------SYDIVLMDQQMPEMDGIEATKAIRRGDAGERACNIPIIALTAFAMAGDKE 1599
Query: 1104 KTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ + AGMD + KP++ + L AI+
Sbjct: 1600 RLMNAGMDAYAPKPISIEQLRTAIR 1624
>gi|315646523|ref|ZP_07899641.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
vortex V453]
gi|315278166|gb|EFU41486.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
vortex V453]
Length = 1001
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 139/290 (47%), Gaps = 62/290 (21%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ----M 412
+ A + AER K+ SH++R + GI G+IEL +EL+ + R +
Sbjct: 753 IRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELL-----KTTELDEDQRNYTDIL 807
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
+ LL +LN ILD SK+E G M L E DV LLE +VDLF A KG ++L
Sbjct: 808 MESSGSLLHILNEILDFSKIETGNMTLNSEPIDVQALLESIVDLFSAKAKEKG--LLLSC 865
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
S + + + GD ++L+Q+L NL+SNA+KFT+EG IS+
Sbjct: 866 SINTTVP-DVIIGDGLRLRQVLVNLISNAIKFTNEGSISM-------------------- 904
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT--FEVDDTGKGIPKEKRKTVFENY 590
+V R EFT F+V DTG GIP E++ +F ++
Sbjct: 905 ---------------------SVEGLHR-TGTQEFTLAFQVKDTGIGIPAEQQHQLFMSF 942
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
Q + GGTGLGL I + LV LMGG I + +E + G+ F F +
Sbjct: 943 SQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESRE--QLGSSFYFTI 990
>gi|294828438|ref|NP_714175.2| histidine kinase/response regulator hybrid protein [Leptospira
interrogans serovar Lai str. 56601]
gi|386075620|ref|YP_005989940.1| histidine kinase response regulator hybrid protein [Leptospira
interrogans serovar Lai str. IPAV]
gi|293386292|gb|AAN51193.2| histidine kinase response regulator hybrid protein [Leptospira
interrogans serovar Lai str. 56601]
gi|353459412|gb|AER03957.1| histidine kinase response regulator hybrid protein [Leptospira
interrogans serovar Lai str. IPAV]
Length = 804
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 158/320 (49%), Gaps = 55/320 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 464
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K N S SS
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQK------NISKSSV------ 569
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++EFT V D+G GIP EK+K VFE + Q
Sbjct: 570 ---------------------------SIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 600
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 601 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 658
Query: 653 EK----ELAGGDSAAGDTQL 668
EK E + D A T++
Sbjct: 659 EKTKDLEKSFQDVVAKSTRI 678
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++ R L
Sbjct: 662 KDLEKSFQDVVAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE--RMQLE- 718
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 719 ----------AFDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 767
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 768 YISKGMNDCLTKPLD 782
>gi|302340600|ref|YP_003805806.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
11293]
gi|301637785|gb|ADK83212.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
11293]
Length = 802
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 138/289 (47%), Gaps = 53/289 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A + AER + KS AN SH+IR + I G+ EL E E + Q+ A+
Sbjct: 140 AQEAAERATRTKSEFLANMSHEIRTPIHTIIGMSELL-SETALDPEQQEYTEQIQFGADV 198
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE-VVLDPSDGSV 477
LL L+N ILD SK+EAGK+ L FD+ + ED VD+ A +KG+E +V +D
Sbjct: 199 LLSLINDILDFSKIEAGKLSLETITFDLYDTAEDAVDMVSLEAHKKGLETIVYIENDVPH 258
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L + GD ++L+QI+ NL +NAVKFT +G + +R
Sbjct: 259 L----LLGDPIRLRQIIVNLFNNAVKFTEKGEVELR------------------------ 290
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
++ R + + F+V DTG GI +EK + +F + QV
Sbjct: 291 -----------------ISLDDRSDGKVRLRFQVRDTGIGIAEEKVQNLFRVFTQVDSST 333
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GGTGLGL I ++L +MGG I + +E+ G+ F F ++E
Sbjct: 334 TRKYGGTGLGLSISKNLSEMMGGRIGVESRES--VGSNFWFTAVFGLQE 380
Score = 66.6 bits (161), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 986 DGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQ 1045
DG+ + L G ILVA+D + +++ + L G V+ NG+ A+Q
Sbjct: 542 DGDAVDLVEELTGSIILVAEDHEVNQQLFKTILESFGHEVDLASNGKEAVQ--------- 592
Query: 1046 RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT 1105
A H YD I MD +MP MNGYEAT IR + + PI+A+TA E ++
Sbjct: 593 ----ATHGRRYDLIFMDVQMPEMNGYEATSAIRS----SGIDTPIVAVTASALRGEEERC 644
Query: 1106 IEAGMDVHLGKPLNRDHLM 1124
GM L KP + L+
Sbjct: 645 RNVGMSGFLVKPFKKRDLI 663
Score = 43.9 bits (102), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+LV DD+ +R L G ++E NG AAL ++RS A +
Sbjct: 396 KVLVVDDTPSVREAVCAYLSEWGCSIECSSNGPAALDVLRS--------QAAEGNGFTLC 447
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
++D MP M+G++ ++ +E + + +++ + SG+EA + +L KP+
Sbjct: 448 IVDQMMPGMDGWQFASEVNSDESLRGIRLFLMSPSGK-SGDEAKMKLLHWYHGYLSKPIR 506
Query: 1120 RDHLM 1124
+ L
Sbjct: 507 KSRLF 511
>gi|417767725|ref|ZP_12415661.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400349743|gb|EJP02031.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Bulgarica str. Mallika]
Length = 804
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 158/320 (49%), Gaps = 55/320 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 464
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K N S SS
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQK------NISKSSV------ 569
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++EFT V D+G GIP EK+K VFE + Q
Sbjct: 570 ---------------------------SIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 600
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 601 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 658
Query: 653 EK----ELAGGDSAAGDTQL 668
EK E + D A T++
Sbjct: 659 EKTKDLEKSFQDVVAKSTRI 678
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++
Sbjct: 662 KDLEKSFQDVVAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE-------- 713
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+ L A +D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 714 RMQLEA-----FDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 767
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 768 YISKGMNDCLTKPLD 782
>gi|414069439|ref|ZP_11405433.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
gi|410808242|gb|EKS14214.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
Length = 1000
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 135/283 (47%), Gaps = 49/283 (17%)
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
E+ + I+ A QA S KS AN SH+IR + G+ G++E+ E G +
Sbjct: 473 ELKVSQRTIELERAIDQALAASQAKSDFVANISHEIRTPMNGVLGMLEMLK-EEGLSEQQ 531
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
L+ N A+ L+ L+N ILD SK+EAGK+ + FDV + D++ RKG
Sbjct: 532 HHYLKLANSSAHSLMNLINDILDFSKIEAGKLDIDNHTFDVVTVCSDMITSLALQGQRKG 591
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP 525
+EV LD D V+ V GD +LKQIL NL++NA KFT +G +S+ IG+
Sbjct: 592 LEVFLDTKD--VID-RMVIGDSHRLKQILINLVNNAFKFTHKGEVSL--------TIGSK 640
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
+++S+ + +F V DTG GI E
Sbjct: 641 YITNSK---------------------------------LLMSFTVKDTGIGIAPENLDR 667
Query: 586 VFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKE 624
+FE + Q GGTGLGL I + L +LMGG+I + K+
Sbjct: 668 LFEVFTQEDSSTTRHFGGTGLGLSICKKLAQLMGGNITVTSKK 710
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 71/124 (57%), Gaps = 11/124 (8%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L +L+ DD+M+ VA+ L+H + +G AL++++ L++ +
Sbjct: 873 LSNYNVLLVDDNMINVEVAKAILKHTKVKITTASDGLEALEVLK--LHEGQ--------T 922
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHL 1114
+D ILMDC+MP +NGY+ T IR + ++ ++PIIA+TA + D+ + AGM+ ++
Sbjct: 923 FDIILMDCQMPNLNGYDTTSAIRSGKAGSEYSYVPIIAMTASAMEGDRDRCLAAGMNDYI 982
Query: 1115 GKPL 1118
KP+
Sbjct: 983 TKPI 986
>gi|417759883|ref|ZP_12407914.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
2002000624]
gi|417777408|ref|ZP_12425227.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
2002000621]
gi|418674812|ref|ZP_13236110.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
2002000623]
gi|409944278|gb|EKN89864.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
2002000624]
gi|410572783|gb|EKQ35846.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
2002000621]
gi|410578249|gb|EKQ46112.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
2002000623]
Length = 804
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 158/320 (49%), Gaps = 55/320 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 464
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K N S SS
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQK------NISKSSV------ 569
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++EFT V D+G GIP EK+K VFE + Q
Sbjct: 570 ---------------------------SIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 600
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 601 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 658
Query: 653 EK----ELAGGDSAAGDTQL 668
EK E + D A T++
Sbjct: 659 EKTKDLEKSFQDVVAKSTRI 678
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++ R L
Sbjct: 662 KDLEKSFQDVVAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE--RMQLE- 718
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 719 ----------AFDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 767
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 768 YISKGMNDCLTKPLD 782
>gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
BS1]
gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
BS1]
Length = 993
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 150/313 (47%), Gaps = 56/313 (17%)
Query: 333 LTFVFKSARAARKEM-----HLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAG 387
L + + A AR E+ L AS+ + +A+ + KS AN SH+IR + G
Sbjct: 295 LINLVEDANRARNELMNANRKLEASIARANTMASEADAANKAKSEFLANMSHEIRTPMNG 354
Query: 388 ITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447
+ G+ EL + + E + +N +LL LLN ILD SK+EA K+++ E DF++
Sbjct: 355 VIGMSEL-LLRSTLDKEQKKFAETINASGKNLLHLLNDILDFSKIEADKLEIEEIDFNLL 413
Query: 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE 507
+LL++++++F A +KG+ P + L ++GD ++KQIL NL+SNA+KFT E
Sbjct: 414 DLLDEIINMFSYKAGKKGLNFTFLPDEDIPL---LLRGDPGRIKQILVNLISNAIKFTDE 470
Query: 508 GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEF 567
G I V +++ F N + R
Sbjct: 471 GEILVNVELEED----------------------FGDNARIR------------------ 490
Query: 568 TFEVDDTGKGIPKEKRKTVFENYVQVK----EGEGGTGLGLGIVQSLVRLMGGDIEIVDK 623
F V DTG GI + + +FE +VQ GGTGLGL I L R MGG I++ +
Sbjct: 491 -FTVSDTGIGIDESRMDAIFEPFVQADGSTIRKYGGTGLGLSISNKLARNMGGRIQV--R 547
Query: 624 ENGERGTCFRFNV 636
+G+ F F++
Sbjct: 548 STPSQGSMFYFSI 560
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 22/134 (16%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
S +K R +IL+ +DS + + V L+ G + +NG AL L
Sbjct: 721 SVTEKERRHFRILLVEDSEVNQLVLLSMLQKEGYEADVVQNGTEALVA----------LA 770
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQ-----VHIPIIALTAHISGEEADK 1104
H YD +LMDC+MP M+GYEATR IR R Q +PI+A+TA+ + ++
Sbjct: 771 KVH---YDLVLMDCQMPEMDGYEATRCIR----RGQGNVMNPEVPIVAITANAMTGDRER 823
Query: 1105 TIEAGMDVHLGKPL 1118
++AGMD ++ KP+
Sbjct: 824 CLQAGMDDYMAKPV 837
>gi|303247947|ref|ZP_07334214.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
gi|302490671|gb|EFL50574.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
Length = 838
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 137/284 (48%), Gaps = 59/284 (20%)
Query: 355 KQMEATQQ-----AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
KQ+EA + AE ++ KS AN SH+IR L G+ G+++L + + E L
Sbjct: 439 KQVEAALRNAKRVAETANVAKSEFLANMSHEIRTPLNGVLGMLQLMRTTSLDAEQRE-YL 497
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
+ L GLL+ ILD S++EAGK+ L E DF V +L ++++F VA KG+
Sbjct: 498 AAAILSTQRLTGLLSDILDLSRIEAGKLTLQEADFKVADLKASILEVFSLVARNKGLR-- 555
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
L+ S + + +++ GD +++QIL NL+ NA+KFT+ G + V A P A G
Sbjct: 556 LEFSTDAAMP-ARLAGDETRIRQILFNLVGNALKFTTTGGVDVAAFALPPRADGR----- 609
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
+ F V DTG GIP + + E
Sbjct: 610 -----------------------------------LPVVFSVRDTGVGIPDARLADIVEP 634
Query: 590 YVQVKEGEG-------GTGLGLGIVQSLVRLMGGDIEIVDKENG 626
+VQ G G G GLGL IV+ LVR+MGG++ I ++E G
Sbjct: 635 FVQ---GLGAPYAPREGAGLGLSIVRRLVRMMGGELAIDNREGG 675
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 21/175 (12%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGK-------KILVADDSMMLRRVAEI 1016
L N G G++ Y + + P R +IL+A+D + R A+
Sbjct: 667 LAIDNREGGGTTIYCALPLRAAQKDAPDETPPARAAADSTDRFRILLAEDEAINRLAAQK 726
Query: 1017 NLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076
L G V +GE L+L+ P+D ILMD MP NG E TR+
Sbjct: 727 MLEKAGYAVTPAGSGEEILRLLAER-------------PFDCILMDIRMPGKNGLEVTRE 773
Query: 1077 IREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
IR + + IPIIA+TA+ + +K + AGMD ++ KP++ HLME +K +
Sbjct: 774 IRHSPRLGPMAAIPIIAVTAYAMSGDREKFLAAGMDGYVSKPIDIAHLMEELKRI 828
>gi|237746502|ref|ZP_04576982.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229377853|gb|EEO27944.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 718
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/459 (27%), Positives = 203/459 (44%), Gaps = 62/459 (13%)
Query: 193 GAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLITNT 252
AV +K + + + L++ N+G V+ + N+ I+ + L T
Sbjct: 174 AAVFSAIDMKSLAKSLGEYDYHDASLTVVRNNGDVVYK--QNSEPGILGVNCFDDLRAMT 231
Query: 253 KTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHR 312
+ +KN S NGTL+ K + Y + + V Y + + + +
Sbjct: 232 LGWPDSVEQMKNRMKVSMNGTLAYTKDKEERYLAYIPLK-VNYWYLIVVTKAKSIDYTAL 290
Query: 313 TSKRALI---LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMN 369
T + +I L++ + + ++M + R A+ L +A +QA + +
Sbjct: 291 TQQYYVISGILVMAILIVSFVAMANLNIHNYRVAQANRQL-------RQAVEQANQANAA 343
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
+ A SH+IR L GI G+IEL +E + LR+ V AN LLGLL+ +LD
Sbjct: 344 RRDFLARISHEIRTPLNGIVGMIELVRLEYDAKEKCLEYLRKATVSANYLLGLLSDVLDI 403
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
S++E+GK+ L + D+ L E+V L +A ++ + + +D S +K D ++
Sbjct: 404 SRIESGKLTLHNDLADMRVLREEVEALAGTLAEKRQLTIRIDDSG---MKHRYFVTDYLR 460
Query: 490 LKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKA 548
LKQ+L NL+SNA+K+T + GHI V +
Sbjct: 461 LKQVLVNLVSNAIKYTGDGGHIVVNFSEE------------------------------- 489
Query: 549 RGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---VKEGEGGTGLGLG 605
AA D ++ T +V D G+GI +K K +FE + Q K+ E G GLGL
Sbjct: 490 --------AATEDSRSL-VTLQVQDDGQGIAPDKLKEIFEPFEQGGGGKKRENGVGLGLS 540
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
IV V LMGG I V+ E G RG+ F + L + E S
Sbjct: 541 IVTGTVTLMGGHIN-VESEPG-RGSRFTITLPLTVGEKS 577
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 15/147 (10%)
Query: 987 GERSQA--QKP---LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSG 1041
GE+S Q+P L G IL+A+D+ + +A L GA V +G AA+
Sbjct: 574 GEKSHGIWQEPVTDLNGVSILMAEDNELNAEIALALLEDKGAKVTVVPDGAAAV------ 627
Query: 1042 LNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEE 1101
D P YD ILMD +MP M+G ATR IR + + IP+IA+TA+ E+
Sbjct: 628 --DAFSQAEPG--TYDVILMDIQMPRMDGTSATRAIRGLAREDAARIPVIAMTANAFEEQ 683
Query: 1102 ADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ ++AGM+ L KP++ + + I+
Sbjct: 684 KTEMVKAGMNDFLFKPIDINRVCACIR 710
>gi|149376977|ref|ZP_01894731.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
gi|149358754|gb|EDM47224.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
Length = 935
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 126/478 (26%), Positives = 209/478 (43%), Gaps = 76/478 (15%)
Query: 203 PITNLFAGINLYGGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPV 262
P +L+ ++ G L+++ D V+V IP T+ +S IT+ ++
Sbjct: 417 PNLDLYPVTSIEEGLLALSNGDLDVMVTHIPAVSYTVARLGLSNLRITSITPYQYELR-- 474
Query: 263 KNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLI 322
+ +I KA S + +S+Y R + + T + ++
Sbjct: 475 ----FAVSKERPELQRILNKALGS-LDATETESIYN----RWIHLDIEQETDYTVVRRIV 525
Query: 323 VMTVGVLISMLTFVFKSARAA-----------RKEMHLCASLIKQMEATQQAERKSMNKS 371
++ + V++ L + K +R R E L A+ ++ ++AE S+ KS
Sbjct: 526 LIAIVVVLIFLYWNRKLSREVDERIRSENALRRSEDELRAAKLEAERLAREAEAASLTKS 585
Query: 372 LAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSK 431
AN SH+IR + + G +L + L + + LL L+N ILD S+
Sbjct: 586 EFLANMSHEIRTPMNAVIGYSDLLS-NTVKDPQQRNYLDAIRAGSRSLLMLINDILDLSR 644
Query: 432 VEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV--EVVLDPSDGSVLKFSKVKGDRVK 489
+EAGKM+L V LL DV +F A +G+ EV +D + + D +
Sbjct: 645 IEAGKMRLEYSAVSVRRLLSDVRHIFDLRATEQGISLEVSVDSKMPAAMML-----DETR 699
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCL----FYKN 545
L+Q+L NL+ NA+KFT EG ++VRA P SS + ++ S + FY+
Sbjct: 700 LRQVLFNLVGNAIKFTHEGGVTVRAT-------ATPRKSSEKQPVEETASEVDRRCFYR- 751
Query: 546 KKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE-----GGT 600
V DTG GIP ++++ +F+ + Q +EG+ GGT
Sbjct: 752 ---------------------LVVTVSDTGIGIPPDQQEQIFDAFEQ-QEGQNTRRYGGT 789
Query: 601 GLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS---ANDNNTQGEKE 655
GLGL I + LVR+MGG++++ E G F V L EA+ A ++ T E E
Sbjct: 790 GLGLAISRKLVRMMGGELQV----ESEPGAGSTFTVKLPRVEATGAQAEEDGTPEESE 843
>gi|118790678|tpd|FAA00248.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 1023
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 153/317 (48%), Gaps = 42/317 (13%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K E ++AE + KS A SH+IR + G+ G++++ ++ + + +R
Sbjct: 424 KMSELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLQM-LMDTDLDTTQQDYVRTAQA 482
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
L+ L+N +LD +K+E+GK++L FD+ + +D++ LF A KG+E+ + SD
Sbjct: 483 SGKALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSD 542
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHI--------SVRACVKKPSAIGNPS 526
V + + GD +++QI++NL+ N++KFT GHI V +C++ + I N +
Sbjct: 543 -QVPQI--LIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVMSCLEVETGIQNTN 599
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTF------------EVDDT 574
S Y R E++ R+ ++ E +F V+DT
Sbjct: 600 TLSG------------YPVANRRCSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDT 647
Query: 575 GKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGT 630
G GIP E + VF ++QV GGTG+GL I + LV LM G+I K + G+
Sbjct: 648 GVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPH--VGS 705
Query: 631 CFRFNVFLAIREASAND 647
F F L ND
Sbjct: 706 TFTFTAVLMRAHCKGND 722
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L K+I+V DD+++ +VA L+ GA V ++G+ A+ L++ PH
Sbjct: 876 LHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLK----------PPH--N 923
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR-----------------NQVHIPIIALTAHIS 1098
+D MD +MP M+G+EATR+IR E+ + PI+A+TA +
Sbjct: 924 FDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWRTPILAMTADVI 983
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ +++ MD ++ KP + L +
Sbjct: 984 QATHEECLKSEMDGYVSKPFEGEQLYSEV 1012
>gi|256828469|ref|YP_003157197.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
gi|256577645|gb|ACU88781.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
Length = 627
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 138/279 (49%), Gaps = 51/279 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A +QAE + K+ AN SH+IR + GI G++EL + P ++ L+ +
Sbjct: 241 QAKEQAESATQAKTQFLANMSHEIRTPMNGIMGMLELAMDNSDPAV-MQKYLQTAMRSSR 299
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL LLN ILD S++EA +M ++EE F++ EL+E++ D F V + +G+ + D +V
Sbjct: 300 SLLRLLNDILDLSRLEASRMPVVEEPFNIRELMEELTDSFQAVVLDRGL-ALRSTVDENV 358
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
F + GD V+++QIL+NL+ NAVKFT G + +R SL+ +R G
Sbjct: 359 PPF--LLGDSVRIRQILTNLIGNAVKFTLRGKVEIRVS----------SLTPARSG---- 402
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
A EV+DTG GIP + + +F + Q +
Sbjct: 403 --------------------------AHRIYIEVEDTGVGIPDQAQTGLFAPFAQADSTQ 436
Query: 598 G----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
G+GLGL I Q LV L+GG + E+ G+ F
Sbjct: 437 TRKFEGSGLGLSITQQLVVLLGGSLAF---ESSPHGSLF 472
Score = 73.6 bits (179), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
+S+ + P+ K+LVA+D+ + +A L + G+ L+ +RS
Sbjct: 493 QSETEPPMSALKVLVAEDNPVNSLIAMKFLEAMNHEPTLATTGQEVLEFMRSE------- 545
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA 1108
+D +LMD +MP M+G EATR IR + PI+A+TAH ++D+ + A
Sbjct: 546 ------SFDLVLMDIQMPEMDGLEATRIIRSWPESEGGKTPIVAMTAHAFSSDSDRFMAA 599
Query: 1109 GMDVHLGKPLNRDHLMEAIKYL 1130
GM+ HL KP++R L ++ L
Sbjct: 600 GMNGHLPKPISRRDLERFLRSL 621
>gi|407699007|ref|YP_006823794.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
gi|407248154|gb|AFT77339.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
Length = 959
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 137/285 (48%), Gaps = 51/285 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA ++AE + KS A+ SH+IR + GI+G+++L + E + L
Sbjct: 565 EAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLM-ASSELSEEQKHYLSLAKFSIQ 623
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK+EAG++Q+ E FD+ E LE++ + + KG+E+ +
Sbjct: 624 GLLHIVNDILDFSKIEAGQLQIEENPFDILESLENLQSQYAIMCQEKGLELHFH---FDL 680
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ V+GD V+ +QILSNLL NAVKFT GHI V +KK +A G +L S
Sbjct: 681 QGYHVVQGDDVRFRQILSNLLGNAVKFTDTGHIEVTTSIKK-NADGTLTLLCS------- 732
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
V DTG GI ++K+ T+F+ + Q
Sbjct: 733 ---------------------------------VKDTGIGIAQDKQSTIFDVFTQEDLST 759
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + L LMGG I + + G+ F F + L
Sbjct: 760 TRKFGGTGLGLSISKQLCELMGGSITLESVKG--HGSTFTFTISL 802
Score = 69.7 bits (169), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 79/134 (58%), Gaps = 14/134 (10%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+ +K+L+ +D+ + + + + +L + T + ++G AL+ LN + + +
Sbjct: 825 KKRKVLIVEDNDINQIIVKQHLSN--HTTLSAKSGLEALE----ALNKMK-------VTF 871
Query: 1057 DYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D ILMDC+MP M+G+EAT++IR E + +PIIALTA+ + ++ + AGMD +L
Sbjct: 872 DVILMDCQMPEMDGFEATQRIRNGEAGARYLDVPIIALTANAMKGDKERCVNAGMDDYLS 931
Query: 1116 KPLNRDHLMEAIKY 1129
KP + L++ +++
Sbjct: 932 KPFDAADLIDKVEH 945
>gi|381160270|ref|ZP_09869502.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380878334|gb|EIC20426.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 707
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 143/286 (50%), Gaps = 51/286 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA QA+ KS A SH+IR + GI GL EL + + + L++++
Sbjct: 160 EAVTQAKAAVQVKSAFLARMSHEIRTPMNGILGLAELALRRSLDATTRQY-LQELHQSGE 218
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLG+LN +LD SK+E+G++ L FD L E+ LF P+A KG+ +V + D +V
Sbjct: 219 QLLGILNDVLDQSKIESGQLSLEAVPFDREALFENERSLFAPMAQNKGLRLVSE-CDPAV 277
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ + GD ++L+Q+LSNLLSNA+KFT G IS+ C++
Sbjct: 278 PRW--LLGDALRLRQVLSNLLSNAIKFTEHGEISL--CLQ-------------------- 313
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
CL +K+ + R + V DTG G+ + + +F+ + Q +
Sbjct: 314 --CLEHKDNQVR-----------------LRWSVSDTGIGMDSDTQARLFQPFTQGDDSI 354
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL I + LV MGG ++ V+ G G+ F F V LA
Sbjct: 355 ARRFGGTGLGLSISRHLVERMGGRLD-VESAPG-VGSRFSFEVCLA 398
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 21/126 (16%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAAL-QLVRSGLNDQRDLGAPHIL 1054
LRG++ILVA+D + + + LR LG V +NG AL QL +
Sbjct: 421 LRGRRILVAEDQPINQHIITDMLRLLGTEVTLAQNGREALEQLAKDD------------- 467
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQV--HIPIIALTAHISGEEADKTIEAGMDV 1112
+D +LMD +MP M+G AT ++R N V +P++ALTA ++ E ++T AG+
Sbjct: 468 -FDLVLMDIQMPEMDGLTATEQLRT----NPVWAKLPVVALTAGVTTAERERTRSAGLSD 522
Query: 1113 HLGKPL 1118
L KP+
Sbjct: 523 LLAKPV 528
>gi|421121811|ref|ZP_15582101.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
Brem 329]
gi|410345148|gb|EKO96267.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
Brem 329]
Length = 804
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 151/302 (50%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 464
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K N S SS
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQK------NISKSSV------ 569
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++EFT V D+G GIP EK+K VFE + Q
Sbjct: 570 ---------------------------SIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 600
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 601 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 658
Query: 653 EK 654
EK
Sbjct: 659 EK 660
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++
Sbjct: 662 KDLEKSFQDVIAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE-------- 713
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+ L A +D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 714 RMQLEA-----FDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 767
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 768 YISKGMNDCLTKPLD 782
>gi|418693864|ref|ZP_13254913.1| 7TM diverse intracellular signaling [Leptospira kirschneri str. H1]
gi|409958441|gb|EKO17333.1| 7TM diverse intracellular signaling [Leptospira kirschneri str. H1]
Length = 820
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 143/284 (50%), Gaps = 51/284 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 422 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 480
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL P+A +K ++ L+
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRLE-GKSE 539
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ ++ V GD ++L+QIL NL N +KFT+ G + ++ K S
Sbjct: 540 IQEY--VYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 581
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+D ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 582 -----------------------KDGVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 616
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GG+GLGL I + LV L GG +++ KE +G+ F F +
Sbjct: 617 TARKFGGSGLGLSITKQLVELQGGVLKLESKEG--KGSKFTFTI 658
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++ R L
Sbjct: 678 KDLEKSFQDVVSKSARILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE--RMQLE- 734
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 735 ----------TFDIILMDIHMPEVDGIEATKWIRSKNQNSKFPI-IIALTADAIESSREK 783
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 784 YISKGMNDCLTKPLD 798
>gi|406976746|gb|EKD99097.1| hypothetical protein ACD_23C00130G0002 [uncultured bacterium]
Length = 777
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 150/319 (47%), Gaps = 53/319 (16%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEA-GPGSELETNLRQMNVCA 416
+A + AE + KS A SH+IR + G+ G+ EL PG + +
Sbjct: 259 QAKEIAEEANHAKSEFLATMSHEIRTPMNGVLGMAELLLKSPLAPGQY--RYVEAVEKSG 316
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+E+G ++L DFD+ EL+++ V +F KG+E+++D SD
Sbjct: 317 RHLLHIINDILDFSKIESGYIELEAMDFDLIELIKETVAMFEQPVRSKGLELIVDISDER 376
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++++QIL+NLLSNAVKFT G I+++ S S H
Sbjct: 377 TM---MVCGDPLRIRQILTNLLSNAVKFTKHGEITLKL---------EEHYSKSNH---- 420
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+ F V DTG GIP R+ +FE + Q
Sbjct: 421 ----------------------------VAFDLLVSDTGVGIPYIAREKIFEVFSQADGS 452
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GGTGLGL I + L +LMGGDI V+ E G G+ F + L A + +Q
Sbjct: 453 TTRKFGGTGLGLTISRHLAQLMGGDI-TVESEPG-FGSVFCVKLMLPNGGAVVHKVVSQV 510
Query: 653 EKELAGGDSAAGDTQLQHM 671
+++L G A D ++ +
Sbjct: 511 QEQLGGTVLLAEDNEVNQI 529
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 15/135 (11%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
SQ Q+ L G +L+A+D+ + + VA L++ G A ENG A+ L+RS
Sbjct: 508 SQVQEQL-GGTVLLAEDNEVNQIVALAMLKNFGIEARAVENGRDAVALLRSR-------- 558
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEA 1108
+D +LMDC+MP M+G++AT IR E N PIIALTA+ + +K + +
Sbjct: 559 -----SFDLVLMDCQMPEMDGFQATMAIRRFEVTSNLRRTPIIALTANAVTGDREKCLSS 613
Query: 1109 GMDVHLGKPLNRDHL 1123
GMD +L KP + L
Sbjct: 614 GMDDYLAKPYTGEQL 628
>gi|222619783|gb|EEE55915.1| hypothetical protein OsJ_04593 [Oryza sativa Japonica Group]
Length = 1001
Score = 122 bits (305), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 153/317 (48%), Gaps = 42/317 (13%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K E ++AE + KS A SH+IR + G+ G++++ ++ + + +R
Sbjct: 402 KMSELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLQM-LMDTDLDTTQQDYVRTAQA 460
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
L+ L+N +LD +K+E+GK++L FD+ + +D++ LF A KG+E+ + SD
Sbjct: 461 SGKALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSD 520
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHI--------SVRACVKKPSAIGNPS 526
V + + GD +++QI++NL+ N++KFT GHI V +C++ + I N +
Sbjct: 521 -QVPQI--LIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVMSCLEVETGIQNTN 577
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTF------------EVDDT 574
S Y R E++ R+ ++ E +F V+DT
Sbjct: 578 TLSG------------YPVANRRCSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDT 625
Query: 575 GKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGT 630
G GIP E + VF ++QV GGTG+GL I + LV LM G+I K + G+
Sbjct: 626 GVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPH--VGS 683
Query: 631 CFRFNVFLAIREASAND 647
F F L ND
Sbjct: 684 TFTFTAVLMRAHCKGND 700
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L K+I+V DD+++ +VA L+ GA V ++G+ A+ L++ PH
Sbjct: 854 LHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLK----------PPH--N 901
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR-----------------NQVHIPIIALTAHIS 1098
+D MD +MP M+G+EATR+IR E+ + PI+A+TA +
Sbjct: 902 FDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWRTPILAMTADVI 961
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ +++ MD ++ KP + L +
Sbjct: 962 QATHEECLKSEMDGYVSKPFEGEQLYSEV 990
>gi|451946001|ref|YP_007466596.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451905349|gb|AGF76943.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 814
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 137/275 (49%), Gaps = 51/275 (18%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH+IR + G+ G+ +L P + ++ ++ DLL ++N +LD
Sbjct: 296 KSEFLANMSHEIRTPMNGVLGVADLLLHADLPEKHRQL-VQTIHASGKDLLYVINELLDF 354
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAG+ +L +FD+ E++E V DLF A K + + +G V + V GD +
Sbjct: 355 SKIEAGRFELDRINFDLREMIESVYDLFSQAANEKKLSLTTSVEEG-VPRI--VYGDPAR 411
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+QIL NL+ NA+KFT+ G ++V N L R G +CL
Sbjct: 412 LRQILINLIGNAIKFTNHGSVNV-----------NALLVELRDG-----ACL-------- 447
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLG 605
FEV DTG GI +E+ KTVF+ + Q GGTGLGL
Sbjct: 448 -----------------LRFEVRDTGIGIAREQIKTVFDTFSQADSSTTRKYGGTGLGLT 490
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
I + LV +M G I+ V+ E G +G+ F F++ L I
Sbjct: 491 ISRQLVEMMEGTID-VESEPG-KGSVFWFSILLQI 523
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Query: 978 KQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
+ T + E E + + ++L+A+D+ + VAE L+ G V+ NG A++
Sbjct: 527 QDTALSEYQEEEQVLENRIYDYQVLLAEDNRTNQIVAEAMLKFFGCRVDLVVNGREAVEA 586
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTAH 1096
V+ YD I MDC+MP ++GY AT +IR EK+N PIIALTAH
Sbjct: 587 VKRK-------------KYDLIFMDCQMPELDGYMATDEIRRFEKQNGSSRTPIIALTAH 633
Query: 1097 ISGEEADKTIEAGMDVHLGKPLNRDHL 1123
+ ++ + AGMD +L KPL + L
Sbjct: 634 ALSGDRERCLAAGMDDYLSKPLCQKDL 660
>gi|418667248|ref|ZP_13228660.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410756851|gb|EKR18469.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|455793265|gb|EMF44967.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Lora str. TE 1992]
Length = 820
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 156/320 (48%), Gaps = 55/320 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 422 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 480
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 537
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K S
Sbjct: 538 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQKNIS---------------- 581
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+ ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 582 -----------------------KSSVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 616
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 617 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 674
Query: 653 EK----ELAGGDSAAGDTQL 668
EK E + D A T++
Sbjct: 675 EKTKDLEKSFQDVVAKSTRI 694
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++
Sbjct: 678 KDLEKSFQDVVAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE-------- 729
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+ L A +D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 730 RMQLEA-----FDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 783
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 784 YISKGMNDCLTKPLD 798
>gi|170748577|ref|YP_001754837.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170655099|gb|ACB24154.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 796
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 119/263 (45%), Gaps = 60/263 (22%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET--------NLRQMNVCANDLLG 421
KS AN SH++R L+ + G E+ G ELE +LR++ A LL
Sbjct: 275 KSQFIANMSHELRTPLSAVIGYSEML------GEELEDIGQAALLPDLRKIEAAARHLLS 328
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFS 481
L+N +LD SK+EAG+M E F V +LL DV D + +KG VLD
Sbjct: 329 LINDVLDISKIEAGRMTASAETFTVSDLLRDVSDSTGSLVEKKGNRFVLDTGAAGTADLG 388
Query: 482 KVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCL 541
+ D+ K++Q L NL+ NA KFT G I +L+ RH
Sbjct: 389 SMHQDQTKIRQCLLNLIGNAAKFTERGTI---------------TLTVRRH--------- 424
Query: 542 FYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE---- 597
R+E A +F V DTG G+ +E+ +FE +VQ +
Sbjct: 425 ------------------REEGADWLSFAVADTGIGLTEEQIGRLFERFVQADDSTTRQF 466
Query: 598 GGTGLGLGIVQSLVRLMGGDIEI 620
GGTGLGL I ++ R MGGDI +
Sbjct: 467 GGTGLGLAITRAFCRTMGGDIGV 489
>gi|421125137|ref|ZP_15585393.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421135628|ref|ZP_15595749.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410020292|gb|EKO87096.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410437433|gb|EKP86533.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
Length = 820
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 156/320 (48%), Gaps = 55/320 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 422 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 480
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 537
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K S
Sbjct: 538 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQKNIS---------------- 581
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+ ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 582 -----------------------KSSVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 616
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 617 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 674
Query: 653 EK----ELAGGDSAAGDTQL 668
EK E + D A T++
Sbjct: 675 EKTKDLEKSFQDVVAKSTRI 694
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++
Sbjct: 678 KDLEKSFQDVVAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE-------- 729
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+ L A +D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 730 RMQLEA-----FDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 783
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 784 YISKGMNDCLTKPLD 798
>gi|386347440|ref|YP_006045689.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
gi|339412407|gb|AEJ61972.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
Length = 1078
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 141/292 (48%), Gaps = 51/292 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A +QAE + KS A+ SH+IR L ITG+ +L + + E+E L + A
Sbjct: 558 DARRQAEEANRAKSAFLASMSHEIRTPLNAITGMSDLLLL-SRVSPEVEEGLAIIKDSAG 616
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N ILD S++EAG+++L +L+ ++F P A KG+ L S+G
Sbjct: 617 TLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELHLSEGLP 676
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
S+V GD V+++QIL NLLSNA+KFT EG + +LS + H
Sbjct: 677 ---SEVNGDPVRIRQILINLLSNALKFTEEGGV---------------TLSVTGH----- 713
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
RD E V+DTG GIP EK + +FE + Q +
Sbjct: 714 ------------------RMYDRD---WEVELVVEDTGIGIPPEKLERIFEPFTQADSSI 752
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
GGTGLGL I + L +MGG + +V E G RG+ F + L E A
Sbjct: 753 TRRYGGTGLGLSISRQLAEMMGGTV-VVSSEVG-RGSTFVCRLVLEEAEGEA 802
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 19/164 (11%)
Query: 971 GEGSSRYKQTEIEEEDGE-----RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATV 1025
G GS+ + +EE +GE + Q + R ++LV +D+ + VA L HLG V
Sbjct: 784 GRGSTFVCRLVLEEAEGEAAPPAKGQVPRVSRAMRVLVVEDNRVNALVARRLLEHLGHRV 843
Query: 1026 EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQ 1085
E+G+ AL L LG + D + MD EMP M+G+E R+IR E +
Sbjct: 844 LVAESGKDALAL----------LGREEV---DAVFMDVEMPGMDGFECARRIRAGEAGGR 890
Query: 1086 VH-IPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+P+ ALTAH GE D+ E GMD + KP+ + L A++
Sbjct: 891 ARMVPVFALTAHAVGEIQDRVDEVGMDGVVLKPVGIEDLARALE 934
>gi|418727285|ref|ZP_13285880.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
12621]
gi|409959526|gb|EKO23296.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
12621]
Length = 820
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 149/302 (49%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 422 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 480
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 537
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K S
Sbjct: 538 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQKNIS---------------- 581
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+ ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 582 -----------------------KSSVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 616
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 617 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 674
Query: 653 EK 654
EK
Sbjct: 675 EK 676
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++
Sbjct: 678 KDLEKSFQDVIAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE-------- 729
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+ L A +D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 730 RMQLEA-----FDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 783
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 784 YISKGMNDCLTKPLD 798
>gi|45659014|ref|YP_003100.1| histidine kinase response regulator hybrid protein [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
gi|45602259|gb|AAS71737.1| histidine kinase response regulator hybrid protein [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
Length = 822
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 156/320 (48%), Gaps = 55/320 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 424 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 482
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 483 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 539
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K S
Sbjct: 540 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQKNIS---------------- 583
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+ ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 584 -----------------------KSSVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 618
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 619 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 676
Query: 653 EK----ELAGGDSAAGDTQL 668
EK E + D A T++
Sbjct: 677 EKTKDLEKSFQDVVAKSTRI 696
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++
Sbjct: 680 KDLEKSFQDVVAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE-------- 731
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+ L A +D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 732 RMQLEA-----FDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 785
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 786 YISKGMNDCLTKPLD 800
>gi|417771385|ref|ZP_12419280.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pomona str. Pomona]
gi|418683285|ref|ZP_13244490.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|418692075|ref|ZP_13253156.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
FPW2026]
gi|418704695|ref|ZP_13265563.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418728841|ref|ZP_13287410.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
12758]
gi|421116595|ref|ZP_15576976.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|400324858|gb|EJO77142.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400358138|gb|EJP14254.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
FPW2026]
gi|409946582|gb|EKN96591.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pomona str. Pomona]
gi|410011838|gb|EKO69948.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410765643|gb|EKR36342.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410776244|gb|EKR56223.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
12758]
gi|455667064|gb|EMF32425.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
Pomona str. Fox 32256]
Length = 804
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 158/320 (49%), Gaps = 55/320 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 406 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 464
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 521
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K N S SS
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQK------NISKSSV------ 569
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++EFT V D+G GIP EK+K VFE + Q
Sbjct: 570 ---------------------------SIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 600
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 601 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 658
Query: 653 EK----ELAGGDSAAGDTQL 668
EK E + D A T++
Sbjct: 659 EKTKDLEKSFQDVVAKSTRI 678
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++ R L
Sbjct: 662 KDLEKSFQDVVAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE--RMQLE- 718
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 719 ----------AFDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 767
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 768 YISKGMNDCLTKPLD 782
>gi|198387188|gb|ACH87040.1| hybrid type histidine kinase isoform b [Oryza sativa Indica Group]
Length = 865
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 171/356 (48%), Gaps = 50/356 (14%)
Query: 320 LLIVMTVGVL-ISMLT-FVFKSA--RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFA 375
L I + G L I++LT +F++ R A+ E K E ++AE + KS A
Sbjct: 232 LAITSSFGTLVIALLTGHIFQATVHRIAKVE----DDFHKMSELKKRAEDADVAKSQFLA 287
Query: 376 NASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAG 435
SH+IR + G+ G++++ ++ + + +R L+ L+N +LD +K+E+G
Sbjct: 288 TVSHEIRTPMNGVLGMLQM-LMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESG 346
Query: 436 KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILS 495
K++L FD+ + +D++ LF A KG+E+ + SD V + + GD +++QI++
Sbjct: 347 KLELETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSD-QVPQI--LIGDPGRIRQIIT 403
Query: 496 NLLSNAVKFTSEGHI--------SVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKK 547
NL+ N++KFT GHI V +C++ + I N + S Y
Sbjct: 404 NLVGNSIKFTERGHIYLTVHVVEEVMSCLEVETGIQNTNTLSG------------YPVAN 451
Query: 548 ARGDLEAVNAAQRDENAMEFTF------------EVDDTGKGIPKEKRKTVFENYVQVKE 595
R E++ R+ ++ E +F V+DTG GIP E + VF ++QV
Sbjct: 452 RRCSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGP 511
Query: 596 G----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
GGTG+GL I + LV LM G+I K + G+ F F L ND
Sbjct: 512 SIARIHGGTGIGLSISKCLVGLMKGEIGFASKPH--VGSTFTFTAVLMRAHCKGND 565
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 30/149 (20%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L K+I+V DD+++ +VA L+ GA V ++G+ A+ L++ PH
Sbjct: 719 LHKKQIIVVDDNIVNLKVAGA-LKKYGAEVTCADSGKKAITLLK----------PPH--N 765
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR-----------------NQVHIPIIALTAHIS 1098
+D MD +MP M+G+EATR+IR E+ + PI+A+TA +
Sbjct: 766 FDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWRTPILAMTADVI 825
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ +++ MD ++ KP + L +
Sbjct: 826 QATHEECLKSEMDGYVSKPFEGEQLYSEV 854
>gi|46201957|ref|ZP_00208322.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 413
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 134/298 (44%), Gaps = 56/298 (18%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
S ++ EA ++AE S KS AN SH++R L GI G EL EA E N
Sbjct: 168 SFVRLDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDEAAD-DETRENADI 226
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
+ + LL L+NSILD +K+EAG M L +D + L+ + + H A KG+ +
Sbjct: 227 IEKSSRHLLELVNSILDIAKIEAGAMTLAVQDVKLAPLVAEAASVHHSAAQAKGITLSSQ 286
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
SD ++ D ++L+QI+ NLLSNAVKFT +G +S+ ++ I
Sbjct: 287 VSDNCP---ETIRADPLRLRQIIHNLLSNAVKFTEKGEVSLSVELEPGHLI--------- 334
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
F V DTG GIP+ +FE +
Sbjct: 335 -------------------------------------FRVSDTGAGIPEGMLHAIFEKFR 357
Query: 592 QV----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
QV GTGLGL + + LV LMGG I + + +GT F F + L E+S+
Sbjct: 358 QVDSFLTRSHSGTGLGLTLARHLVELMGGTIGV--QSTVGKGTVFHFTLPLHQPESSS 413
>gi|383757736|ref|YP_005436721.1| integral membrane sensor hybrid histidine kinase [Rubrivivax
gelatinosus IL144]
gi|381378405|dbj|BAL95222.1| integral membrane sensor hybrid histidine kinase [Rubrivivax
gelatinosus IL144]
Length = 759
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 159/337 (47%), Gaps = 62/337 (18%)
Query: 304 KGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQA 363
+GL++ S R+ +L ++ G I+ML V S A L ++ E QA
Sbjct: 176 RGLLAERESQSARSAMLAQLLIGGAAIAMLAVVLFS----------WAKLEQRNEQLAQA 225
Query: 364 ERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLL 423
+ KS A+ SH+IR + I GL +L E + E ++++ L+ ++
Sbjct: 226 ---NAVKSDFVASMSHEIRTPMNAIIGLTQLLEREPLAREQAEM-VQRIRTAGRSLMAII 281
Query: 424 NSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV 483
N ILD S++EAG+M+L F +G+LL + L P+A KG+ + ++ + S L+ S V
Sbjct: 282 NDILDLSRIEAGRMRLDSRSFVLGQLLIQIDSLLAPMARDKGLSLRIESALASSLQRSLV 341
Query: 484 KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFY 543
GD +L+Q+L NL+ NA+KFT G I VR V
Sbjct: 342 -GDPQRLEQVLVNLVGNAIKFTEHGEIVVRTRV--------------------------- 373
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGG 599
++D+ ++ FEV DTG GI ++ + +FE + Q G +GG
Sbjct: 374 --------------IEQDDTQVKLRFEVQDTGIGIRPQQIRELFEPFSQADSGLARRQGG 419
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
TGLGL I + LV LMGG I D G G+ F F +
Sbjct: 420 TGLGLSISKRLVELMGGRIG-ADSVQGV-GSTFWFEL 454
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 14/137 (10%)
Query: 992 AQKP-LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGA 1050
AQ P L+G ++L DD+ + L GA A +G+ A+ +RS +
Sbjct: 476 AQGPRLQGMRLLAVDDNDTNLDLLSRALLLEGAEATAARDGQQAVVTLRSNPD------- 528
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGM 1110
+D +LMD +MP+M+GYEATR IR++ NQV PII +A + EE + ++ G
Sbjct: 529 ----AFDAVLMDLQMPVMDGYEATRVIRQQLGLNQV--PIIIFSAAVLVEEQQRAMDVGA 582
Query: 1111 DVHLGKPLNRDHLMEAI 1127
L KP++ + L+ +
Sbjct: 583 TQFLSKPVDIEELVAVL 599
>gi|343087668|ref|YP_004776963.1| multi-sensor hybrid histidine kinase [Cyclobacterium marinum DSM
745]
gi|342356202|gb|AEL28732.1| multi-sensor hybrid histidine kinase [Cyclobacterium marinum DSM
745]
Length = 1375
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 149/294 (50%), Gaps = 58/294 (19%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL-ETNLRQMNVC 415
+E+ + AE+ S+ KS AN SH+IR L GI G +L +EL ET + +N+
Sbjct: 716 IESKEIAEKASLAKSEFLANMSHEIRTPLNGIIGFTDLLV-----KTELDETQSQYINIV 770
Query: 416 ---ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
A LL ++N ILD SK+EAGK++L D+ EL D+ A +KGVE++L+
Sbjct: 771 NQSAVSLLNIINDILDFSKIEAGKLELEIIKSDIFELSGQATDVVSYQAQQKGVEMLLNI 830
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+ S+ +F +V D ++LKQIL NLL NAVKFT +G I ++
Sbjct: 831 -EKSLPRFIQV--DDIRLKQILINLLGNAVKFTDKGEIELK------------------- 868
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+ +N D+N FEV DTG GI +E +K +F+ ++Q
Sbjct: 869 -------------------IHTLNKI--DKNKRVIRFEVRDTGIGISEEYQKRIFDAFMQ 907
Query: 593 ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
+ GGTGLGL I L+ +MG ++++ K N G+ F F++ L E
Sbjct: 908 EDGSTTKKYGGTGLGLTISNKLLSMMGSELQLNSKLN--EGSTFYFDLELVTEE 959
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 116/286 (40%), Gaps = 45/286 (15%)
Query: 870 LYKVIKLLPEFGGVQSKRH--------GKASR--DAGSSSYSKHPYRTGKSRSKAGRHEI 919
L + K LP F V R G A + D G H + R E+
Sbjct: 827 LLNIEKSLPRFIQVDDIRLKQILINLLGNAVKFTDKGEIELKIHTLNKIDKNKRVIRFEV 886
Query: 920 QEEGSSSSEHSRRDIM-----PNASVLLKTGNSS-GEGPRRDIMPNASVLLKTGNSSGEG 973
++ G SE ++ I + S K G + G ++ L+ + EG
Sbjct: 887 RDTGIGISEEYQKRIFDAFMQEDGSTTKKYGGTGLGLTISNKLLSMMGSELQLNSKLNEG 946
Query: 974 SSRYKQTEIEEEDGE-RSQAQKPLRGKKILVADDS----MMLRRVAEINLRHLGATVEAC 1028
S+ Y E+ E+GE A PL +LV DD+ +L+ + +N V+
Sbjct: 947 STFYFDLELVTEEGELEPLADYPLNN--VLVVDDNSNNRYILKEIFSLN----DIKVDEA 1000
Query: 1029 ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHI 1088
ENG AL+ + S ND YD +LMD MP M+G E T+KIRE + +
Sbjct: 1001 ENGFEALKQIES--ND-----------YDVVLMDLNMPYMDGIETTKKIRENFTNKKSQV 1047
Query: 1089 PIIALTAHISGEE---ADKTIEAGMDVHLGKPLNRDHLMEAIKYLH 1131
PI+ L H S E+ + E ++ + KP+ L EA+ L
Sbjct: 1048 PILLL--HSSAEDDYILKQCKELSINRRISKPIKNKELFEALSKLQ 1091
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 19/129 (14%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACE--NGEAALQLVRSGLNDQRDLGA 1050
+K G ++L+A+D+ + +A+ + + VE E NG A ++ A
Sbjct: 1109 KKETVGARVLIAEDNSINMFLAKTIVLKVSPKVEIFEATNGLDAYEM------------A 1156
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA-HISGEEADKTIEAG 1109
LP D ILMD +MPIM+G+EAT+K++E K IPIIA+TA +I GE+ +K + +G
Sbjct: 1157 TEFLP-DIILMDIQMPIMSGHEATKKLKENPKTKD--IPIIAITAGNIKGEK-EKCMASG 1212
Query: 1110 MDVHLGKPL 1118
M + KP+
Sbjct: 1213 MSDFVPKPI 1221
>gi|170748185|ref|YP_001754445.1| multi-sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170654707|gb|ACB23762.1| multi-sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 1157
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 127/283 (44%), Gaps = 51/283 (18%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLG 421
QAER S KS A SH+IR L G+ G +L G N ++ LL
Sbjct: 663 QAERASAAKSEFLAAMSHEIRTPLNGVIGYADLLLDGTDLGPAARRNADRIRTAGAALLT 722
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFS 481
++N +LD SKVEAG+++++ F V L+++ V + P A RKG+ + + G
Sbjct: 723 VVNDVLDFSKVEAGQIEIVPRPFAVEALIDNAVSIVRPSAERKGLALTVALGPGLP---D 779
Query: 482 KVKGDRVKLKQILSNLLSNAVKFTSEGHI--SVRACVKKPSAIGNPSLSSSRHGFLQSIS 539
++GD +L+QIL NLL+NA+KFT+ G I SVR SA G L
Sbjct: 780 WIEGDEDRLRQILLNLLNNAMKFTASGGIDLSVRVSPDAASATGGTRLR----------- 828
Query: 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV----KE 595
F V DTG GIP +K +F + QV
Sbjct: 829 -----------------------------FAVRDTGIGIPTDKCDRLFRRFSQVDGSISR 859
Query: 596 GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I +SLV LMGG I + G+ F F L
Sbjct: 860 EYGGTGLGLAISKSLVTLMGGTIGVASTVG--HGSTFWFEADL 900
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD +LMD +MP+M+G ATR+IR +PI+A+TA++ ++ + AG+D H+G
Sbjct: 966 YDLVLMDVQMPVMDGIAATRRIRALGG-AAGRLPILAMTANVLPQQVAELRAAGLDDHIG 1024
Query: 1116 KPLNRDHLMEAIKY 1129
KP D L+ AI +
Sbjct: 1025 KPFRADALLAAIDH 1038
>gi|182415595|ref|YP_001820661.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
PB90-1]
gi|177842809|gb|ACB77061.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
PB90-1]
Length = 606
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 136/294 (46%), Gaps = 59/294 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR-QMNVCA 416
+A ++A+ + KS A SH+IR + GI G++++ + GS L R Q+ +
Sbjct: 222 QAKERADAANRAKSDFLATMSHEIRTPMNGIMGMLQVLH-----GSSLTVEQRAQVEIAG 276
Query: 417 ND---LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
N L+ LLN ILD SK+E+GK++ FD+ L DVV L P A KG+ + L
Sbjct: 277 NSAESLMRLLNDILDFSKIESGKLEFESVSFDLKAALHDVVSLLRPRAAEKGLALELHLP 336
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
D V GD V+LKQ+L NL NA+KFT +G +++R
Sbjct: 337 DNLP---DHVIGDSVRLKQVLLNLTGNAIKFTEQGEVALR-------------------- 373
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ- 592
V +QRD + F V DTG G+ R+ +F+ + Q
Sbjct: 374 ---------------------VRVSQRDTTSARVGFSVRDTGIGMDDATRQKLFQLFSQG 412
Query: 593 ---VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ GGTGLGL I Q L MGG IE+ + + +G F F + A +A
Sbjct: 413 DSSMNRRFGGTGLGLAISQRLAEHMGGKIEV--RSSPGQGAEFSFELSFATDDA 464
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D ++MDC++P M+G+EATR+IR K +PIIALTA+ E+ + AGMD L
Sbjct: 525 WDAVIMDCQLPGMDGFEATRQIR--RKLAGRPLPIIALTANARPEDRAACVAAGMDDFLT 582
Query: 1116 KPLNRDHLMEAI-KYLH 1131
KP+ +D L + K+L
Sbjct: 583 KPVRQDELRACLGKWLQ 599
>gi|91223629|ref|ZP_01258894.1| signal transduction histidine kinase [Vibrio alginolyticus 12G01]
gi|91191715|gb|EAS77979.1| signal transduction histidine kinase [Vibrio alginolyticus 12G01]
Length = 584
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 160/338 (47%), Gaps = 65/338 (19%)
Query: 306 LVSLVHRTSKRA---LILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQ 362
L+S + TSK A LIL +T V++ L+ + + + A ++
Sbjct: 156 LMSSIFLTSKAAVYSLILTTALTFSVIVLYLSHYITELKKTKLALQ---------AAVKK 206
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
AE + KS+ A SH+IR + G+ G+ +L + ++ +L + L+ +
Sbjct: 207 AEESNHAKSMFLATMSHEIRTPMNGVIGMTQL-LISDNKDPKIREHLTTLLESGEHLMVI 265
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N ILD SK+E GK+ L EE+FD+ +LL +++ F P A K +++V D + +
Sbjct: 266 INEILDFSKLEQGKLDLSEEEFDINQLLIPIMNAFKPQANDKSIQLVFDTKE--LANNLV 323
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLF 542
+KGD V+++QI+ NL+ NA+KFTS+G V+A +K
Sbjct: 324 LKGDIVRIRQIVFNLVGNAIKFTSDGM--VKAVLK------------------------- 356
Query: 543 YKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK----EGEG 598
D + +F+V DTG GIP + +++F + Q + G
Sbjct: 357 -----------------YDIKTEKLSFQVSDTGIGIPTARLESIFNPFEQAEIRTMHDFG 399
Query: 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GTGLGL IV+ L MGG++ V E G G+CF V
Sbjct: 400 GTGLGLSIVKKLCLAMGGNVT-VTSELG-IGSCFTATV 435
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 16/137 (11%)
Query: 991 QAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGA 1050
Q Q+ G+ +L+ +D+ + + VA+ + LG TV NGE AL+ V+
Sbjct: 450 QLQESFEGETVLIVEDNRVNQLVAKRMCQKLGFTVCIASNGEEALKKVQKA--------- 500
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGM 1110
P++ +LMD +MP M G EAT IR E I+ TA ++ E A + AG
Sbjct: 501 ----PFNVVLMDHQMPKMGGIEATCIIRNEHDFKG---TILGCTADVTDETAAGYMRAGA 553
Query: 1111 DVHLGKPLNRDHLMEAI 1127
+ + KP+ + L EAI
Sbjct: 554 NGVITKPIRLESLAEAI 570
>gi|154254026|ref|YP_001414850.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
lavamentivorans DS-1]
gi|154157976|gb|ABS65193.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
lavamentivorans DS-1]
Length = 744
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 143/288 (49%), Gaps = 49/288 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ----MNV 414
A +QA+ + KSL A SH+IR + G+ G+ +L ++L+ R +
Sbjct: 186 ALEQAKEANRAKSLFLATMSHEIRTPMNGVIGMTKLLL-----DTKLDPAQRSYAEAVRA 240
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
LL ++N ILD SK+EAGK+ L E FD +LE V +L P A KG+E+V + S
Sbjct: 241 SGEALLNIINDILDYSKIEAGKVTLDEAAFDPRNVLESVAELLAPRAFDKGLEIVTEISP 300
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
SV + + GD +++QIL NL NA+KFT G +++R ++ S G + R G
Sbjct: 301 -SVPRM--LMGDEARIRQILLNLAGNAIKFTGRGGVALRLLREETSPAGR-RIDGKREGR 356
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+ I EV+DTG G+ ++ R+ +F+++ Q
Sbjct: 357 IGLI------------------------------LEVEDTGIGMDEQAREHIFDDFAQAD 386
Query: 595 EGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ GTGLGL I + LV M G IE V+ E G RG+ FR ++ L
Sbjct: 387 QSHARRYEGTGLGLAITKRLVGAMEGRIE-VESEEG-RGSVFRAHLPL 432
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D+ + + L H G TV +G A+ + + + DL +L
Sbjct: 608 VLVAEDNEINALLTRTLLEHTGHTVRLARDGAEAVAALEADTGGKIDL----------VL 657
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD MP M+G+ AT +IR+ E +PIIALTA+ ++ ++AGMD +L KP+
Sbjct: 658 MDLHMPGMDGFTATARIRDLEM-PHAALPIIALTANAMADDRQACLDAGMDDYLSKPV 714
>gi|307719332|ref|YP_003874864.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta
thermophila DSM 6192]
gi|306533057|gb|ADN02591.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta
thermophila DSM 6192]
Length = 1078
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 142/298 (47%), Gaps = 51/298 (17%)
Query: 352 SLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
+L + +A +QAE S KS A+ SH+IR L ITG+ +L + + E+E L
Sbjct: 552 ALRRLEDARRQAEEASRAKSAFLASMSHEIRTPLNAITGMSDLLLL-SRVSPEVEEGLAI 610
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
+ A LL L+N ILD S++EAG+++L +L+ ++F P A KG+ L
Sbjct: 611 IKDSAGTLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELR 670
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
S+G V GD V+++QIL NLLSNA+KFT EG + +LS +
Sbjct: 671 LSEGLP---PVVNGDPVRIRQILINLLSNALKFTEEGGV---------------TLSVTG 712
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
H RD E V+DTG GIP EK + +FE +
Sbjct: 713 H-----------------------RMYDRD---WEVELVVEDTGIGIPPEKLERIFEPFT 746
Query: 592 Q----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
Q + GGTGLGL I + L +MGG I +V E G RG+ F + L E A
Sbjct: 747 QADSSITRRYGGTGLGLSISRQLAEMMGGTI-VVSSEVG-RGSTFVCRIVLEEAEGEA 802
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 21/164 (12%)
Query: 971 GEGSSRYKQTEIEEEDGE-----RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATV 1025
G GS+ + +EE +GE + Q + R ++LV +D+ + VA L HLG V
Sbjct: 784 GRGSTFVCRIVLEEAEGEAAPPAKGQVSRASRAMRVLVVEDNRVNALVARRLLEHLGHRV 843
Query: 1026 EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEE--KR 1083
+G AL L LG + D + MD EMP M+G+E R+IR E +R
Sbjct: 844 LVAGSGREALDL----------LGREEV---DAVFMDVEMPGMDGFECARRIRAGEAGER 890
Query: 1084 NQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+V +P+ ALTAH GE D+ E GM+ + KP+ + L A+
Sbjct: 891 ARV-VPVFALTAHAVGEIRDRVDEVGMNGVVLKPVGIEDLDRAL 933
>gi|406660413|ref|ZP_11068545.1| Signal transduction histidine-protein kinase BarA [Cecembia
lonarensis LW9]
gi|405555798|gb|EKB50804.1| Signal transduction histidine-protein kinase BarA [Cecembia
lonarensis LW9]
Length = 716
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 165/363 (45%), Gaps = 83/363 (22%)
Query: 292 GVKSVYALAMPRK----GLVSL-----VHRTSKRALILLIVMTVGVLISMLTFVFKSARA 342
G+K++ M K G V VH S+ L LL+V ML +
Sbjct: 132 GIKTLITFPMSYKNQLLGFVGFDWVREVHPYSETELQLLLVYA-----EMLVNI------ 180
Query: 343 ARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPG 402
+K L + LI +A ++AE + +KS AN SH+IR L G+ G +L
Sbjct: 181 -KKRAELESFLI---QAKEEAEAANRSKSEFLANMSHEIRTPLNGVIGFTDLLM-----N 231
Query: 403 SELETNLRQM----NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFH 458
S+L RQ N+ A+ LLGL+N ILD SK+EAGK+++ + + D+ +L E+ D+
Sbjct: 232 SDLSNEQRQYVLSANISAHSLLGLINDILDFSKIEAGKLEIEQLETDILDLAEETADIVK 291
Query: 459 PVAMRKGVEVVLD-PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVK 517
+K +E +L+ P D + ++ +V D ++LKQIL NLL NA+KFT +G + + K
Sbjct: 292 FNTAKKQIEFLLNIPHD--IPRYFQV--DPIRLKQILVNLLGNAIKFTEKGEVELSIYFK 347
Query: 518 KPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKG 577
+ N L FTF V DTG G
Sbjct: 348 EIQGADNEGL---------------------------------------FTFSVRDTGIG 368
Query: 578 IPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFR 633
I E++ +F ++ Q GGTGLGL I Q L M D +I + RG+ F
Sbjct: 369 ISDEQKPKLFRSFSQADASTTRRYGGTGLGLVISQMLAEKM--DTQIAFESELGRGSRFY 426
Query: 634 FNV 636
F +
Sbjct: 427 FTI 429
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%)
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
+ N Q+ + A D I MD +MP +G+EAT +IRE EK + PI+ALTA
Sbjct: 621 ITEAFNGQKAIDAYKKEKPDLIFMDVQMPEKDGFEATFEIRELEKASGEFTPIVALTAGA 680
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
E + + AGM+ L KP++++ L E ++
Sbjct: 681 LESEKQRCLNAGMNYFLTKPIDKEKLAEVLE 711
>gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
Length = 1564
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 164/342 (47%), Gaps = 47/342 (13%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNV 414
+A + A+ ++ KS A SH+IR A+ G+TGL+ ++ +ET +
Sbjct: 1018 QARKDADAANVAKSEFLATMSHEIRTPMNAVIGMTGLLLNTTLDNQQRDFVET----IRS 1073
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDP 472
+ LL L+N ILD SK+EAGK++ E+ F + +E+ + L P A+ K +E+ + DP
Sbjct: 1074 SGDALLTLINDILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELAYLFDP 1133
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
S + + GD +L+QIL NLL+N VKFT +G + + + I P +S R
Sbjct: 1134 STP-----NHIVGDVTRLRQILVNLLTNGVKFTEQGEVVIYVQDITDTDITQPETTSQRK 1188
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
F +N++ FEV D+G GIP ++ +F+++ Q
Sbjct: 1189 NFTD------IQNQRRL-----------------IQFEVRDSGIGIPADRMDRLFKSFSQ 1225
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
V GGTGLGL I +SL ++MGG I + K G+ F F + A+ A +N
Sbjct: 1226 VDASTTKKYGGTGLGLAICRSLSQMMGGRIWVESKAG--VGSSFFFTI--AVPVAPEGEN 1281
Query: 649 NTQGEKELAGGDS--AAGDTQLQHMNLTVKAPSPSLSIRTNS 688
++L G D LT++A + + I+T S
Sbjct: 1282 TLDQSQQLLDGKQLLVVDDNPTNRRILTLQAQTWGMGIQTVS 1323
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 14/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D ++ ++VA + L+ LG + NGE L+ A H YD +
Sbjct: 1437 QILLAEDIVVNQKVALLILKQLGYRADVANNGEEVLE-------------ALHRQSYDVV 1483
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP M+G A R I E+ + + IIALTA+ + + + AGM ++ KP+
Sbjct: 1484 LMDVQMPEMDGLTAARHITEQWQEEE-QPYIIALTANAMQGDREMCMAAGMHDYVSKPIR 1542
Query: 1120 RDHLMEAIK 1128
D L A +
Sbjct: 1543 VDELKSAFE 1551
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 17/163 (10%)
Query: 968 NSSGEGSSRYKQTEIE-EEDGERS--QAQKPLRGKKILVADDSMMLRRVAEINLRHLGAT 1024
+ +G GSS + + +GE + Q+Q+ L GK++LV DD+ RR+ + + G
Sbjct: 1259 SKAGVGSSFFFTIAVPVAPEGENTLDQSQQLLDGKQLLVVDDNPTNRRILTLQAQTWGMG 1318
Query: 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN 1084
++ G AL L+ S D + +D ++D +MP M+G E R IR+ ++R
Sbjct: 1319 IQTVSGGAEALALLES---DSK---------FDLAILDMQMPEMDGVELARHIRQLDQRK 1366
Query: 1085 QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
H+P++ L++ E E L KP+ + +L +A+
Sbjct: 1367 --HLPLVMLSSLGQDEIIKHKQEIQFSAILNKPIQQSYLYDAL 1407
>gi|114570744|ref|YP_757424.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
gi|114341206|gb|ABI66486.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
Length = 858
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 138/296 (46%), Gaps = 56/296 (18%)
Query: 330 ISMLTFVFKSARAARKE-MHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGI 388
I ML + RA K+ L + + E T++ E + KS AN SH+IR L GI
Sbjct: 438 IGMLARTLEEQRATNKDAFDLLEARVA--ERTRELEAANQAKSTFLANISHEIRTPLNGI 495
Query: 389 TGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGE 448
GL ++ + + + R + L LLN +LD SK+EAGKM+L + D
Sbjct: 496 LGLAQVLRTTSR-SKQRQDQARMIEESGETLTQLLNDVLDMSKIEAGKMELSPQVVDPAR 554
Query: 449 LLEDVVDLFHPVAMRKGVE--VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS 506
L D+ LF A K ++ V +DPS L+F D ++++Q LSNLLSNA+KFTS
Sbjct: 555 LFGDMHTLFQASAEAKSLDFSVEIDPSLPERLEF-----DPLRVRQCLSNLLSNAIKFTS 609
Query: 507 EGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME 566
+G + +S +++ G LE
Sbjct: 610 KGSV--------------------------QLSARWHRETDQAGLLE------------- 630
Query: 567 FTFEVDDTGKGIPKEKRKTVFENYVQVK---EGE-GGTGLGLGIVQSLVRLMGGDI 618
+V DTG GIP EK T+F + Q GE GGTGLGL I + L RLMGGDI
Sbjct: 631 --IKVCDTGIGIPPEKLDTLFSPFTQSDAAIAGEFGGTGLGLSIARDLARLMGGDI 684
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
P+D +LMD MPI++G EATR++R+ + + IP+ ALTA+ S ++AD + AGMD
Sbjct: 775 PFDIVLMDVRMPILDGLEATRRLRDSDAPWR-DIPVTALTANASHQDADICLAAGMDSFA 833
Query: 1115 GKPLNRDHLMEAIK 1128
KPL L A++
Sbjct: 834 SKPLKPASLFNAMR 847
>gi|125528916|gb|EAY77030.1| hypothetical protein OsI_04985 [Oryza sativa Indica Group]
Length = 1023
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 153/317 (48%), Gaps = 42/317 (13%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K E ++AE + KS A SH+IR + G+ G++++ ++ + + +R
Sbjct: 424 KMSELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLQM-LMDTDLDTTQQDYVRTAQA 482
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
L+ L+N +LD +K+E+GK++L FD+ + +D++ LF A KG+E+ + SD
Sbjct: 483 SGKALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSD 542
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHI--------SVRACVKKPSAIGNPS 526
V + + GD +++QI++NL+ N++KFT GHI V +C++ + I N +
Sbjct: 543 -QVPQI--LIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVMSCLEVETGIQNTN 599
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTF------------EVDDT 574
S Y R E++ R+ ++ E +F V+DT
Sbjct: 600 TLSG------------YPVANRRRSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDT 647
Query: 575 GKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGT 630
G GIP E + VF ++QV GGTG+GL I + LV LM G+I K + G+
Sbjct: 648 GVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPH--VGS 705
Query: 631 CFRFNVFLAIREASAND 647
F F L ND
Sbjct: 706 TFTFTAVLMRAHCKGND 722
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L K+I+V DD+++ +VA L+ GA V ++G+ A+ L++ PH
Sbjct: 876 LHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLK----------PPH--N 923
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR-----------------NQVHIPIIALTAHIS 1098
+D MD +MP M+G+EATR+IR E+ + PI+A+TA +
Sbjct: 924 FDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWRTPILAMTADVI 983
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ +++ MD ++ KP + L +
Sbjct: 984 QATHEECLKSEMDGYVSKPFEGEQLYSEV 1012
>gi|452851529|ref|YP_007493213.1| putative Histidine kinase [Desulfovibrio piezophilus]
gi|451895183|emb|CCH48062.1| putative Histidine kinase [Desulfovibrio piezophilus]
Length = 842
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 140/282 (49%), Gaps = 53/282 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A +QAE S KS+ AN SH+IR L G+ G++ L +LE +N +
Sbjct: 455 VQAKEQAETASHAKSIFLANMSHEIRTPLNGLVGMLHLLRSSEPTEKQLEYVDIALN-SS 513
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE--VVLDPSD 474
L LL+ ILD SKVE GK+Q+++E FD +++ + LF PVA ++GVE + LD
Sbjct: 514 TRLNRLLSDILDLSKVEVGKIQVVKEPFDFKDVMVGLAHLFQPVAKQQGVEFSLNLDSDI 573
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
+VL GD +L+Q+LSN++ N++KFT G I + A + P + +
Sbjct: 574 PAVL-----LGDSTRLQQLLSNIVGNSIKFTENGTIKLDARLL-------PRCPADK--- 618
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV- 593
+CL F ++DTG GIP E +FE + QV
Sbjct: 619 ----TCLL--------------------------FSIEDTGIGIPDEMVGVLFEPFTQVE 648
Query: 594 ---KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
+ G GLGL IV+ LV LMGG I + + E GE T +
Sbjct: 649 GSYQRNFQGAGLGLSIVKGLVSLMGGTISL-ESEVGEGTTTY 689
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 20/150 (13%)
Query: 975 SRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAA 1034
SR K +E E + + A +L+ADD + A+ + +G TV NGE A
Sbjct: 703 SREKVKMVEAEGADLTLAHA------VLLADDDRVSGLSAKWQMEKMGCTVTLVTNGELA 756
Query: 1035 LQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIAL 1093
L+ + +D +++D +MP+++G E R IR + ++ IPI+AL
Sbjct: 757 LEALSKS-------------DFDMVVLDIQMPVLDGLETARAIRGGDVGLDKADIPIVAL 803
Query: 1094 TAHISGEEADKTIEAGMDVHLGKPLNRDHL 1123
TA+ + +K +EAGMD +L KP+ D L
Sbjct: 804 TAYAMTGDREKFLEAGMDDYLTKPMEPDEL 833
>gi|428773893|ref|YP_007165681.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
gi|428688172|gb|AFZ48032.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
Length = 1255
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 39/285 (13%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY-VEAGPGSELETNLRQMNVC 415
++A +QAE S KS AN SH+IR L G+ G EL P + NL ++
Sbjct: 717 IQAKKQAELASRAKSEFLANMSHEIRTPLNGVIGFSELLLQTNLDPTQQKYLNL--VHQS 774
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
N LL L+N ILD SK+EAG+++L + D+ L +V+D+ +K +E++L+ S
Sbjct: 775 GNVLLDLINDILDFSKIEAGRLELSNQKTDLWNLATEVIDIIRLQVGKKDIEILLNIS-P 833
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ +F+ + D +++KQIL NLL NAVKFT +G I ++ +
Sbjct: 834 QLPRFAWL--DEIRVKQILINLLGNAVKFTDKGEIELKITIH------------------ 873
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
SI+ + E + Q++ F V DTG GI EK++ +F+ + Q E
Sbjct: 874 DSITIPYS---------EKLQPLQKEHLIFNLEFSVRDTGTGISPEKQRKIFKAFTQEDE 924
Query: 596 G----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL I L+ LM + + + N RG+ F F +
Sbjct: 925 SITRKYGGTGLGLTISNKLLALMDSQLHLESEVN--RGSRFFFTL 967
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D +LMD +MP+M+GYEA IRE E++ PIIALTA E + +EAGM+ +L K
Sbjct: 1181 DLVLMDIQMPLMSGYEAAIAIREIEQK---PTPIIALTAGTIKGEKQRCMEAGMNDYLSK 1237
Query: 1117 PLNRDHLMEAIK 1128
P+ + I+
Sbjct: 1238 PIVLEQFSRVIR 1249
>gi|254255329|ref|ZP_04948645.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
gi|124901066|gb|EAY71816.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
Length = 1020
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 140/288 (48%), Gaps = 47/288 (16%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQMNVCANDLLGLLNSILD 428
KS+ A SH+IR L + G +EL ++ GP ++ + L + + LL +LN +LD
Sbjct: 533 KSVFLATMSHEIRTPLNAVIGNLEL--MKRGPLADAQRRRLHAADTSSTALLHILNDVLD 590
Query: 429 TSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVK-GDR 487
SKVEAG++++ FD LL+DV + F P+A RKG+ V+ D + L+ S + GD
Sbjct: 591 LSKVEAGQLRIDAVPFDCAALLDDVTESFRPLAERKGLSVICDVA----LEPSPYRIGDP 646
Query: 488 VKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKK 547
++++QI+SNLLSNA+KFT GH+ V A +A G +
Sbjct: 647 IRIRQIVSNLLSNAIKFTDAGHVRVAAHAASDAAHGT--------------------GRT 686
Query: 548 ARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLG 603
A G A V DTG GIP+ + +F Y Q + GGTGLG
Sbjct: 687 AGG-------------APVVEIVVADTGIGIPEAAQAAIFGLYRQADDSIHRRYGGTGLG 733
Query: 604 LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
L + + L+ M GDI + G+ FR + L + + D + +
Sbjct: 734 LALCRRLLDAMSGDIAVSSAPGA--GSTFRVRIPLPVCDDERGDASAE 779
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 27/174 (15%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLR----------GKKILVADDSMMLRRV 1013
+ ++ G GS+ + + D ER A + G +LV +D R +
Sbjct: 748 IAVSSAPGAGSTFRVRIPLPVCDDERGDASAEVSDVSHVAIAGTGLSVLVVEDHPASRLL 807
Query: 1014 AEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073
LR L E G AL V +D +L D +P M+G+
Sbjct: 808 LADQLRELDVDATLVECGADALAAVERAR-------------FDIVLTDLGLPDMDGWSL 854
Query: 1074 TRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++R + + +IA+TAH+ ++ + +AG+ L KPL L A+
Sbjct: 855 ASELRARDP----ALRLIAMTAHVGSDDERRCADAGIHALLRKPLTLRKLSHAL 904
>gi|82466315|gb|ABB76249.1| hybrid type histidine kinase isoform a [Oryza sativa Indica Group]
Length = 1023
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 153/317 (48%), Gaps = 42/317 (13%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K E ++AE + KS A SH+IR + G+ G++++ ++ + + +R
Sbjct: 424 KMSELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLQM-LMDTDLDTTQQDYVRTAQA 482
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
L+ L+N +LD +K+E+GK++L FD+ + +D++ LF A KG+E+ + SD
Sbjct: 483 SGKALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSD 542
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHI--------SVRACVKKPSAIGNPS 526
V + + GD +++QI++NL+ N++KFT GHI V +C++ + I N +
Sbjct: 543 -QVPQI--LIGDPGRVRQIITNLIGNSIKFTERGHIYLTVHVVEEVMSCLEVETGIQNTN 599
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTF------------EVDDT 574
S Y R E++ R+ ++ E +F V+DT
Sbjct: 600 TLSG------------YPVANRRRSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDT 647
Query: 575 GKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGT 630
G GIP E + VF ++QV GGTG+GL I + LV LM G+I K + G+
Sbjct: 648 GVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPH--VGS 705
Query: 631 CFRFNVFLAIREASAND 647
F F L ND
Sbjct: 706 TFTFTAVLMRAHCKGND 722
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L K+I+V DD+++ +VA L+ GA V ++G+ A+ L++ PH
Sbjct: 876 LHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLK----------PPH--N 923
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR-----------------NQVHIPIIALTAHIS 1098
+D MD +MP M+G+EATR+IR E+ + PI+A+TA +
Sbjct: 924 FDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWRTPILAMTADVI 983
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ +++ MD ++ KP + L +
Sbjct: 984 QATHEECLKSEMDGYVSKPFEGEQLYSEV 1012
>gi|119776261|ref|YP_929001.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
gi|119768761|gb|ABM01332.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
Length = 1236
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 146/296 (49%), Gaps = 59/296 (19%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN---LRQMN 413
+EA Q AE ++ KS AN SH+IR + I G+++L AG S E L + +
Sbjct: 709 LEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQL----AGRTSLTEQQKDYLDKAS 764
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DP 472
A LL ++N ILD SK+EAGK++L + F + ++L+ +DL A KG+E++L P
Sbjct: 765 FSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNALRAQEKGIELLLYAP 824
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
++ +KGD ++L Q+L NLLSNAVKFT G I
Sbjct: 825 VSAGIM----LKGDPLRLGQVLINLLSNAVKFTQNGEI---------------------- 858
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+L + +RD + + F V DTG GI +E++ +F+ + Q
Sbjct: 859 ------------------ELGCEDVGERD-HRITLKFWVRDTGIGISREQQDKLFDAFAQ 899
Query: 593 ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + LV +MGG ++ V+ E G G+ F F V I E +
Sbjct: 900 ADGSTTRKYGGTGLGLSISKHLVSMMGGTMQ-VESEPG-VGSTFSFTVSFEIAEEA 953
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 75/131 (57%), Gaps = 19/131 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV--RSGLNDQRDLGAPHILPYDY 1058
+L+ +D+ + ++VA L+ G V+ +NG+ +L++V RS YD
Sbjct: 1111 VLLVEDNFINQQVATELLKSAGYEVDVADNGQISLEMVGKRS---------------YDA 1155
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
ILMD +MP+M+G A ++R+ ++ +PIIA+TAH + +K++ AGM+ H+ KP+
Sbjct: 1156 ILMDIQMPVMDGLTAATELRKRYSFDE--LPIIAMTAHAMSGDREKSLAAGMNAHITKPI 1213
Query: 1119 NRDHLMEAIKY 1129
+ L E + +
Sbjct: 1214 VLNELFETLSH 1224
>gi|427429041|ref|ZP_18919078.1| Multi-sensor Hybrid Histidine Kinase [Caenispirillum salinarum AK4]
gi|425881115|gb|EKV29807.1| Multi-sensor Hybrid Histidine Kinase [Caenispirillum salinarum AK4]
Length = 1457
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 137/293 (46%), Gaps = 52/293 (17%)
Query: 351 ASLIKQME-ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
A L +E A QQAE + KS A SH++R + GI G+ +L PG E +
Sbjct: 909 ADLADALEVARQQAEAANQAKSQFLAVMSHELRTPMTGILGMADLLMATELPG-EGHRFV 967
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
+ A+ LL LLN +LD SK+EAG++ L E DF E++EDVV L + A KG+ +
Sbjct: 968 STLKRSADTLLTLLNDVLDFSKIEAGQLVLEEIDFRPTEIMEDVVQLLNVKASEKGLLLR 1027
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
+ + V+GD +L+QIL NL+ NAVKFT G + V
Sbjct: 1028 WQALEAAP---EAVRGDPTRLRQILLNLVGNAVKFTERGTVEV----------------- 1067
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
DL +A D + +F V DTG G+ +++ +F+
Sbjct: 1068 ---------------------DL---TSATEDATGVWLSFAVRDTGIGMTADQQARLFQP 1103
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ Q GGTGLGL I + LV MGG+I +V + GT F F + +
Sbjct: 1104 FTQADASTTRRYGGTGLGLVICKRLVEAMGGEIGMVTRPG--HGTTFTFTIHM 1154
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
PYD +LMD +MP+M+G EATR IR + +PI+ALTA + + ++ + AG+D +L
Sbjct: 1232 PYDIVLMDMQMPVMDGPEATRAIRALPE-PACGLPIVALTADLLSSDRERYLAAGLDDYL 1290
Query: 1115 GKPLNRDHLMEAIKYL 1130
KP++ L + + L
Sbjct: 1291 TKPIDWQRLSDTVDRL 1306
>gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 1526
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 151/305 (49%), Gaps = 67/305 (21%)
Query: 374 FANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTS 430
A SH+IR A+ G+TGL+ +E +E + + + + LL L+N ILD S
Sbjct: 853 LATMSHEIRTPMNAVLGMTGLL----LETPLNAEQRDFVETIRISGDALLTLINDILDFS 908
Query: 431 KVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV-VLDPSDGSVLKFSKVKGDRVK 489
K+EAG+M+L DFD+ LE+V DLF P A KG+E+ VL P + V ++ ++GD +
Sbjct: 909 KLEAGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLMPPE--VPRY--LRGDASR 964
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+QIL+NL+SNA+KFT +G + ++A V + +A H L+
Sbjct: 965 LRQILNNLVSNAIKFTHQGEVVIQAEVLQETAT---------HAHLK------------- 1002
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLG 605
V DTG GIP + +F+ + QV GGTGLGL
Sbjct: 1003 -------------------LSVRDTGIGIPAAAQSKLFQPFSQVDASTTRKYGGTGLGLA 1043
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL-------AIREASAN-DNNTQGEKELA 657
I + L LMGG I + +E +G+ F + L + + SA + QG++ LA
Sbjct: 1044 ICKQLTELMGGTISLQSQEG--QGSTFSVELTLERQPYVQQLSQPSARIPVDLQGKRLLA 1101
Query: 658 GGDSA 662
D+A
Sbjct: 1102 VDDNA 1106
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 110/203 (54%), Gaps = 24/203 (11%)
Query: 928 EHSRRDI-MPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEED 986
EHSRR + A+ L+K P + ++++ G SSG +S + + +
Sbjct: 1188 EHSRRAAEIGFAAYLVK--------PVKQSRLQEALVMALGKSSGLSTSLLGMSPVLPQT 1239
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
R +P + +IL+A+D+ + ++VA L LG + NG+ L L++
Sbjct: 1240 TPRED--RPRQSLRILLAEDNPVNQKVALRQLESLGYKADVVANGQEVLDLLQK------ 1291
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI 1106
+ YD ILMDC+MP+M+GYEATR++R++E+R+ +IA+TA+ E+ ++ +
Sbjct: 1292 -------VSYDLILMDCQMPVMDGYEATRRLRQQERRSGHRTVVIAITANAMQEDRERCL 1344
Query: 1107 EAGMDVHLGKPLNRDHLMEAIKY 1129
+AGMD +L KP+ ++ L + +
Sbjct: 1345 QAGMDDYLSKPVLKEDLQRLLNH 1367
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L+GK++L DD+ R++ G VE EN A+ +R + + R P
Sbjct: 1094 LQGKRLLAVDDNATNRKILRCQATTWGMVVEEAENAYQAMDKLRQAVREGR--------P 1145
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+ ++D +MP ++G R I+ + + + ++ +T+ GE + + E G +L
Sbjct: 1146 FPLAVLDMQMPEVDGETLGRWIKADPQLAETQ--LVMMTSLGLGEHSRRAAEIGFAAYLV 1203
Query: 1116 KPLNRDHLMEAI 1127
KP+ + L EA+
Sbjct: 1204 KPVKQSRLQEAL 1215
>gi|350553469|ref|ZP_08922643.1| Hpt sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349790554|gb|EGZ44462.1| Hpt sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 876
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 116/360 (32%), Positives = 174/360 (48%), Gaps = 63/360 (17%)
Query: 290 VAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHL 349
VAG ++ YA +P G++ L HRT + A+ V ++ L+ L + SA+A E
Sbjct: 120 VAG-QTFYAFNLPDFGVLVL-HRTGE-AMRETFVQSLQKLMDKLAY---SAKACLYE--- 170
Query: 350 CASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
A L QMEA Q A ++ KS AN SH+IR + GI G++++ +E + L
Sbjct: 171 -AELKHQMEAAQAA---NVAKSRFLANMSHEIRTPMNGILGMLDI-VLETPLEKSQQDYL 225
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
R + A LLG++N +LD SK+EA K+ L EE D+ + + V+ +A+ K ++
Sbjct: 226 RLAKLSAQHLLGIINQVLDISKIEANKVDLHEEVLDLVDFIGKVMQTQSALALAKDIQ-- 283
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
L G+ L V DRV+L+QIL NLL NA+KFT G +++ A A G+
Sbjct: 284 LHYRLGAKLP-RYVTADRVRLQQILVNLLGNALKFTERGSVTLEANALDSDA-GD----- 336
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
CL +F + DTG GIP++K +F+
Sbjct: 337 ---------QCL-------------------------LSFHIKDTGIGIPQDKLVRIFDA 362
Query: 590 YVQVKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
+ QV GTGLGL I + LV LM G I V E G +G+ F + L + + +A
Sbjct: 363 FEQVDTQRNRKYEGTGLGLAITKQLVELMQGQIS-VGSELG-KGSQFTVKLPLPLADPAA 420
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 17/130 (13%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
+Q +PL IL+A+D+ + + VA L + A NG A+++ + ++D
Sbjct: 568 AQTTRPL---AILLAEDNQINQMVALKLLEKIHAQCSVANNGAEAVRMAQ-----EKD-- 617
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREE-EKRNQVHIPIIALTAHISGEEADKTIEA 1108
+D ILMD MP+M+G EA R IRE+ + + +PIIA+TA+ + + +
Sbjct: 618 ------FDLILMDIMMPVMDGIEAIRCIREDAQTHGRPFVPIIAMTANTMKGDKEYYLSE 671
Query: 1109 GMDVHLGKPL 1118
G+ ++ KP+
Sbjct: 672 GVQGYVAKPV 681
Score = 40.8 bits (94), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+K+L DD + R V ++ + E C +G A+ ++ Q P+D
Sbjct: 433 RKVLFVDDEPINREVFAAMMQIIDLPHEICSSGPEAIFRLKWAREAQE--------PFDL 484
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+ MD MP M+GY A +I + I I LTA EE+++ E + +L KP+
Sbjct: 485 VFMDSHMPGMDGYTAAEQIIKNGLLEGHQILI--LTASALKEESERCKELDLLGYLTKPI 542
Query: 1119 NRDHL 1123
+ L
Sbjct: 543 ALNDL 547
>gi|359459603|ref|ZP_09248166.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 1038
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 156/319 (48%), Gaps = 53/319 (16%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
A +AE + KS AN SH+IR A+ G+TGL+ +EA +ET +
Sbjct: 279 AKHEAEAANQAKSQFLANMSHEIRTPMNAVIGMTGLLLNTPLEAQQQDFVET----IRSS 334
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE---VVLDP 472
+ LL L+N ILD SK+EAGK+ L ++ F++ +E+ + + A K +E ++ P
Sbjct: 335 GDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASKASEKNLELAYLINPP 394
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+ ++L GD +L+Q+L NLL+NA+KFT EG + V K
Sbjct: 395 TPTAIL------GDITRLRQVLVNLLNNALKFTGEGEVVVYVSSKP-------------- 434
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+ K+ A DLE + A E F+V DTG GIP +K + +F+++ Q
Sbjct: 435 --------IESKDLDAESDLEVIAEA----TPYEIQFDVKDTGIGIPPDKLERLFKSFSQ 482
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA-----IREA 643
V GGTGLGL I + L LMGG I + + + G+ F F + + +
Sbjct: 483 VDASTTRKFGGTGLGLAISKQLSELMGGKIWVSSEVS--VGSTFSFTITASEIPNYVSPK 540
Query: 644 SANDNNTQGEKELAGGDSA 662
+A+D G++ L D+A
Sbjct: 541 AASDVQLAGKQLLIVDDNA 559
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 19/136 (13%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q PLR IL+A+D ++ ++VA + L+ LG + NG L+++ + L Q
Sbjct: 691 QHPLR---ILLAEDMVVNQKVALLTLKQLGYRADVANNG---LEVIEA-LERQA------ 737
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREE-EKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
YD +LMD +MP M+G ATR++ + ++ H IIA+TA+ + + ++AGMD
Sbjct: 738 ---YDVVLMDVQMPEMDGLTATREVCQRWSPEDRPH--IIAMTANAMQGDREMCLDAGMD 792
Query: 1112 VHLGKPLNRDHLMEAI 1127
++ KP+ L + +
Sbjct: 793 AYITKPVRIHELRDVL 808
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK++L+ DD+ R + + + G A ++G AL+ ++ G+N
Sbjct: 547 LAGKQLLIVDDNATNREILSLQAQSWGMLTCAVKSGIKALEWLQRGVN------------ 594
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D ++D +MP M+G KIR E N +P++ L++ + + + L
Sbjct: 595 FDLAVLDMQMPEMDGVTLAEKIRAEP--NGKTLPLVVLSSLGQDDIRARAGDINFSAILN 652
Query: 1116 KPLNRDHL 1123
KP+ + L
Sbjct: 653 KPVQQAQL 660
>gi|117925512|ref|YP_866129.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609268|gb|ABK44723.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1120
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 140/295 (47%), Gaps = 55/295 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE + KS A SHDIR + + G++EL E+ E L+ +
Sbjct: 722 LQAKELAESANRAKSDFLATMSHDIRTPMNAVLGMVELLG-ESSLDPEQSHYLKIIRRAG 780
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+ LL L+N ILD SK+EAG+++L +DF + E +E V+D+ A KG+++ +
Sbjct: 781 STLLSLINDILDLSKIEAGQLKLELDDFTLAETVEHVMDILRHKASEKGLQL---QTHLH 837
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ +V+GD +L+QIL NLL NAVKFT +G +S+ ++P
Sbjct: 838 IPPQQRVRGDAQRLRQILLNLLGNAVKFTQQGSVSL-TLQQQPDG--------------- 881
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+++F+V DTG GI ++K +FE +VQ + G
Sbjct: 882 -----------------------------QYSFQVADTGPGIAPHRQKIIFEPFVQEESG 912
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
GG+GLGL I LV M G + + K G+ F F + LA A D
Sbjct: 913 THRHFGGSGLGLSICHKLVTAMRGTLWL--KSQLGHGSIFYFTLPLATAMEPAPD 965
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 79/133 (59%), Gaps = 14/133 (10%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L K++LV DD+ R + + L+ ++ E+GE A++L + +QR
Sbjct: 982 LVNKRLLVVDDAEDNRNLIQAFLKSCQMQIQMAEDGEQAVRLCQ----EQR--------- 1028
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
+D ILMD +MPIMNG EATR IR+ E+ +++ PIIAL+AH + + + AG D+HL
Sbjct: 1029 FDLILMDIQMPIMNGLEATRLIRQHEQMQHKSRTPIIALSAHAMLDVNNDALAAGCDLHL 1088
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + L+EA+
Sbjct: 1089 SKPIAKKRLLEAL 1101
>gi|157963514|ref|YP_001503548.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
gi|157848514|gb|ABV89013.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
Length = 1234
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 142/294 (48%), Gaps = 53/294 (18%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
+ +EA Q AE ++ KS AN SH+IR + I G+++L + + L +
Sbjct: 706 VAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTPQQKDYLEKAG 764
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DP 472
A+ LL ++N ILD SK+EAGK++L F + ++L+ +DL A KGVE++L P
Sbjct: 765 FSAHSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAP 824
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
++ ++GD ++L Q+L NLLSNAVKFT G I
Sbjct: 825 VTAGLI----LEGDPLRLGQVLINLLSNAVKFTQSGEI---------------------- 858
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+L + +RD + + F + DTG GI KE++ T+F+ + Q
Sbjct: 859 ------------------ELGCEDVGERD-HRITLKFWIRDTGIGISKEQQATLFDAFAQ 899
Query: 593 ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GGTGLGL I + LV LMGG +++ + G+ F F + I E
Sbjct: 900 ADGSTTRKYGGTGLGLSISKHLVSLMGGTMQV--ESEMSVGSTFSFTISFEIAE 951
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 17/130 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ + ++VA L+ G TV+ ENG+ AL ++ YD +L
Sbjct: 1112 VLLVEDNFINQQVATELLKSAGYTVDVAENGQIALDMLDKA-------------KYDAVL 1158
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD +MP+M+G AT+++R KR V +P+IA+TAH + +K++ AGM+ H+ KP+
Sbjct: 1159 MDIQMPVMDGLTATKELR---KRYPVDELPVIAMTAHAMSGDREKSLAAGMNAHITKPIV 1215
Query: 1120 RDHLMEAIKY 1129
L + + +
Sbjct: 1216 LTELFDTLSH 1225
>gi|333983217|ref|YP_004512427.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333807258|gb|AEF99927.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 926
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 136/284 (47%), Gaps = 43/284 (15%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +A+ + KS AN SH+IR + G+ G+ EL + E + ++
Sbjct: 264 AVVEAQAANAAKSQFLANMSHEIRTPMNGVLGMTELL-LSTSLTPEQKRFAENVHKSGES 322
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N ILD SK+EAG ++L DF + + +EDV++LF A K +E+ + G V
Sbjct: 323 LLSIINDILDFSKIEAGHLKLESVDFCLYQTVEDVIELFSERAYNKHLELNYRIA-GDVP 381
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+ V GD +L+QILSNLLSNA+KFTS+G+I+V +
Sbjct: 382 E--NVIGDPTRLRQILSNLLSNAIKFTSQGNITVDVGLT--------------------- 418
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
D N DE A F V DTG GI K +F+ + Q
Sbjct: 419 ------------DTPNNNRIINDERAYGVRFTVSDTGIGISKGVIPNLFQPFSQADSSTT 466
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I + LV +M GDIE V GE GT F N+ L
Sbjct: 467 RKYGGTGLGLSICKQLVNMMSGDIE-VHARIGE-GTTFTVNLPL 508
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 14/128 (10%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+ +D+ + + VA+ L G TV+ ENG ALQ + D++ YD +L
Sbjct: 677 ILLVEDNRINQAVAQAMLNSFGCTVDIAENGLEALQAI-----DRK--------AYDLVL 723
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MDC MP M+GYE T +IR + N PIIALTA+ + +K + AGMD +L KP
Sbjct: 724 MDCMMPKMDGYETTAEIRRRQNCDNLSRFPIIALTANAIEGDREKCLLAGMDDYLTKPFE 783
Query: 1120 RDHLMEAI 1127
L + I
Sbjct: 784 SAALYKMI 791
>gi|374301838|ref|YP_005053477.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
gi|332554774|gb|EGJ51818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
Length = 1051
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 135/287 (47%), Gaps = 54/287 (18%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
AE S KS+ A+ SH++R L GI G++EL ++ + + L + LL +
Sbjct: 665 AEAASRAKSMFLAHMSHELRTPLNGILGMVELAHMACADEKQCK-YLELAKQSGHTLLDI 723
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGSVLKF 480
+N ILD +K+EAGK +L E F + E++E ++ + RKG+EV +DP
Sbjct: 724 INDILDLAKIEAGKAELKNEPFSLREVMESTIEPLAMLGRRKGLEVTWRMDPRIP----- 778
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
++ GD+ +L+Q+L+NL+ NA+KFT G +SV L SR GF C
Sbjct: 779 DRLAGDQGRLRQVLANLVGNALKFTERGSVSV-------------DLGLSRGGFETRPYC 825
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--- 597
M F + DTG GIP++K +FE++ Q
Sbjct: 826 ---------------------PAGMRLIFSIADTGIGIPQDKLPHLFESFTQALTSAHVK 864
Query: 598 -GGTGLGLGIVQSLVRLMGGDI---EIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I + LV +M G I +V K G+ F F +
Sbjct: 865 FGGTGLGLCISKRLVEMMQGTIWAESVVGK-----GSTFSFTAVFCV 906
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 22/127 (17%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHL----GATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
R ++LVA+D+ ++ ++ +R L G T G ALQ +R
Sbjct: 926 RRLRVLVAEDN----QINQVLIRELLGMQGHTASIVGTGLEALQALRQA----------- 970
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
YD +LMD MP MNG +A ++IR E + IP+IALTA+ + + + AGMD
Sbjct: 971 --EYDLVLMDIRMPDMNGLQAVQRIRAGEA-GKTDIPVIALTAYALEGDRKRFLAAGMDG 1027
Query: 1113 HLGKPLN 1119
+L KP+
Sbjct: 1028 YLAKPIR 1034
>gi|71905882|ref|YP_283469.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
gi|71845503|gb|AAZ44999.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
Length = 1005
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 131/280 (46%), Gaps = 55/280 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A AE S KS AN SH+IR + I GL L + + + +L ++N+ A
Sbjct: 258 AKDAAESASRTKSAFLANMSHEIRTPMNAIVGLTHLLRRDTTTPKDAK-HLDKINLAAQH 316
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGS 476
LL ++N ILD SK+EA K+ + E DF+ ++ + + L P AM KG+EVV +DP +
Sbjct: 317 LLSIINDILDFSKIEADKLIIDEADFEFEQIFQQLNTLITPQAMDKGLEVVDRIDPEIPA 376
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V V GD ++L QIL+N SNAVKFT G I RA +
Sbjct: 377 V-----VHGDAMRLGQILANFASNAVKFTEHGSIVFRARL-------------------- 411
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
LE + N + FE+ DTG G+ E+R +F + Q
Sbjct: 412 ---------------LEQIG------NLLRIRFEITDTGIGLAPEQRDRLFLPFEQADTS 450
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GGTGLGL I + L LM G I VD G+ G+ F
Sbjct: 451 TTRKFGGTGLGLAISKRLTELMNGRIG-VDSTPGQ-GSTF 488
Score = 80.1 bits (196), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 15/133 (11%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
PL G ++L+A+D+ + + VA L+ +G V+ E+G A++L + ND
Sbjct: 655 PLSGHRVLLAEDNPINQEVALELLKDVGLRVDIAEDGRQAVEL--AAAND---------- 702
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
YD ILMD +MP M+G EAT IR +R PI+A+TA+ E+ D + AGM+ H+
Sbjct: 703 -YDLILMDIQMPNMDGIEATHAIRHLPQRTAT--PILAMTANAFNEDRDACLGAGMNDHI 759
Query: 1115 GKPLNRDHLMEAI 1127
KP++ L EA+
Sbjct: 760 AKPVDPQKLYEAL 772
Score = 48.9 bits (115), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 27/160 (16%)
Query: 968 NSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKK------ILVADDSMMLRRVAEINLRHL 1021
++ G+GS+ + + ++ SQ ++P R + +L+ DD L ++ + L+
Sbjct: 480 STPGQGSTFWCELPLQ---CAHSQHERPRRNRLPETINILLIDDDPNALEAISHM-LKAY 535
Query: 1022 GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE-- 1079
A + ++GEA L V S L + R +D +L D MP M+G E +R+IRE
Sbjct: 536 DARITTADSGEAGLNCVHSALAEGRH--------FDLVLTDWAMPGMDGIETSRRIREIL 587
Query: 1080 -EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+ R I+ +TA+ ++ EAG+ + KP+
Sbjct: 588 PQAPR------IVLVTAYGREWPMERLREAGIVYQINKPV 621
>gi|172037290|ref|YP_001803791.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
51142]
gi|354553829|ref|ZP_08973135.1| integral membrane sensor hybrid histidine kinase [Cyanothece sp.
ATCC 51472]
gi|171698744|gb|ACB51725.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
51142]
gi|353554546|gb|EHC23936.1| integral membrane sensor hybrid histidine kinase [Cyanothece sp.
ATCC 51472]
Length = 848
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 161/344 (46%), Gaps = 44/344 (12%)
Query: 297 YALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQ 356
+ + P K L VH+ + L + + + L+ FK A K A+L K+
Sbjct: 310 FRVITPIKNLQVAVHQINNNQFDLQLNIDTNDELQELSDGFKEMAQALKNS--FATLEKK 367
Query: 357 M-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
+ E T+Q E+ + K N +H++R L I G I+ Y + +E + L ++
Sbjct: 368 VKERTKQLEKANQAKREFLGNINHELRTPLNLIIGYIDRLYQDGYLNNEQKKQLDIIDRN 427
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
+ LL L+N ILD SK+E+G + L E F++ +LL ++ ++F+ KG+ ++L+
Sbjct: 428 SQHLLSLINQILDISKIESGHITLQENSFNLSQLLTNLQEVFNLSCYSKGLNLILENKIE 487
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
L + + D+ KLKQIL NLL NAVKFT +G I + A V S H
Sbjct: 488 DKLNY--IYADKNKLKQILINLLHNAVKFTDKGMIKISAEV-------------SNH--- 529
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
L Y + L +V DTGKGI +E+ +F+ + Q +
Sbjct: 530 ---RSLHYSKNQPNYTLR---------------IQVKDTGKGIAREEISQLFKAFEQTQT 571
Query: 596 GEG---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
G GTGLGL I ++LMGG+I + + + GT F +
Sbjct: 572 GRNLNQGTGLGLYISHQFIKLMGGNITV--ESSPHSGTTFTLEI 613
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD + R + L +G +V+A NG+ A+ L + PH+ I
Sbjct: 643 RILVVDDDLESRDLLVNMLLSVGLSVQAANNGQEAISLWQQ--------WQPHL-----I 689
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDVHLGKP 1117
MD +MPI++G +AT+ I+ K + P II +TA S K + G D + KP
Sbjct: 690 WMDLQMPIIDGCKATQHIK---KASHSQFPYIILVTADASETVRKKALFCGCDDFVAKP 745
>gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1202
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 150/315 (47%), Gaps = 59/315 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY-VEAGPGSELETNLRQMNVCA 416
+A AE + +KS AN SH+IR + G+ G++EL E P E ++++R A
Sbjct: 530 KAMLDAESANRSKSEFLANMSHEIRTPMNGVVGMMELLSNTELTP--EQQSHMRTARNSA 587
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDG 475
LL ++N ILD SK+EAGK++L E FD+ EL+EDV L + +E++ + P+D
Sbjct: 588 ESLLTIINDILDFSKIEAGKLELEEIAFDLAELVEDVTALLAQRVDSEKLELLHNAPADL 647
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ +V GD +L+Q+L NL+ NAVKFT EG + VR V++
Sbjct: 648 PM----QVAGDPTRLRQVLVNLVGNAVKFTPEGEVEVRMTVER----------------- 686
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+D + + EV DTG GI + R +F + Q
Sbjct: 687 ------------------------QDADTVTVLTEVRDTGIGIDEAVRPRLFRMFTQADG 722
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI----REASAND 647
GGTGLGL I + LV LMGG++ +G+ F F + I + +
Sbjct: 723 STTRRFGGTGLGLAISKQLVELMGGEVGFSSVMG--QGSTFWFRITFPIVAKAQAVAGGV 780
Query: 648 NNTQGEKELAGGDSA 662
++ QG + L D+A
Sbjct: 781 DSLQGLRALVVDDNA 795
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 15/132 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D + ++VA L LG VE +G ++L A H YD +L
Sbjct: 935 VLLVEDHPINQQVARGMLAGLGCRVEIANDGHEGVRLF-----------ARH--RYDLVL 981
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD +MP M+GYE T IR+ E+ + PI+ALTA+ ++ D+ + A MD +L KP++
Sbjct: 982 MDIQMPGMDGYETTDAIRQMERSERWPRTPIVALTANAMEQDRDRCLAADMDDYLSKPIS 1041
Query: 1120 RDHLMEAI-KYL 1130
D L A+ K+L
Sbjct: 1042 LDRLKAAMSKWL 1053
>gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1209
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 138/292 (47%), Gaps = 55/292 (18%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELC-YVEAGPGSELETNLRQMN 413
K EA +QA S KS AN SH+IR + I G+ EL E P E + L +
Sbjct: 534 KYQEAARQAREASRAKSEFLANMSHEIRTPMNAIMGMTELAGNTELTP--EQKEYLSIIQ 591
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL--- 470
+ LL LLN ILD SK+EAGK+ L DF + E + + V +A +KGVE+V+
Sbjct: 592 NSSESLLALLNDILDFSKIEAGKLDLEYIDFSLRETVHNAVYSVAMLAHQKGVELVVRVE 651
Query: 471 -DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
D DG KGD +L+Q+L NL+ NA+KFT +G + V +
Sbjct: 652 PDMEDG-------FKGDPDRLRQVLVNLVGNAIKFTQQGEVQVEVRLAAAE--------- 695
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE---NAMEFTFEVDDTGKGIPKEKRKTV 586
E + A RDE + ++ F V DTG GI +K++ +
Sbjct: 696 -----------------------EMLQHAARDEGYLSKLQILFRVVDTGSGIAWDKQEGI 732
Query: 587 FENYVQV----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
FE +VQ + GGTGLGL I LV +M G I + E G RG+ F F
Sbjct: 733 FEAFVQADGSSRRKYGGTGLGLSISSRLVEMMKGRI-WMQSEPG-RGSTFSF 782
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 19/158 (12%)
Query: 973 GSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENG- 1031
G ++Q + +E GE +PL KIL+A+D+ + + +A L G V +G
Sbjct: 931 GGMDHEQEQAQEGKGEEIDGLRPL---KILLAEDNEVNQLLAVRILSQEGHQVRGVHDGR 987
Query: 1032 EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR-EEEKRNQVHIPI 1090
EA L R +D +LMD +MP+M+G EATR IR E++ + P+
Sbjct: 988 EAVDALAREN--------------FDLVLMDVQMPVMDGLEATRLIRAREQEEGLLRTPV 1033
Query: 1091 IALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
IA+TAH + +K +EAGMD ++ KP+ + L + IK
Sbjct: 1034 IAITAHALKGDREKCLEAGMDSYVQKPIRKADLFKEIK 1071
>gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
Length = 844
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 42/305 (13%)
Query: 337 FKSARAARKEM-HLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELC 395
+++ R ++K++ ASL+ Q+ E ++ KS AN SH++R + G+ G+ L
Sbjct: 156 YQALRESQKQLVEKNASLVA---LNQKLEEATLAKSEFLANMSHEVRTPMNGVIGMTALL 212
Query: 396 YVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVD 455
++ E + A+ +L ++N ILD SK+E+GK+ L F++ +E+ +D
Sbjct: 213 -LDTELTDEQREYVEATRSSADAMLTIINDILDFSKIESGKLDLESHPFELHTCIEEALD 271
Query: 456 LFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRAC 515
L P A K +++ D ++ K + GD +L+QIL NL+ NAVKFT+EG + ++
Sbjct: 272 LLAPKAAEKDLDLAYS-VDDAIPKI--LVGDVTRLRQILVNLIGNAVKFTNEGEVFIQV- 327
Query: 516 VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTG 575
KP+ P + R SI+ + F V DTG
Sbjct: 328 --KPA----PKHFNDRDRSASSITG---------------------PDMWMLQFSVRDTG 360
Query: 576 KGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTC 631
GIP +K+ +F+++ QV GGTGLGL I + L LMGGDI++ + + +G+
Sbjct: 361 VGIPIDKQHRLFKSFQQVDASTTRHYGGTGLGLAICKKLSELMGGDIQV--ESDAGKGST 418
Query: 632 FRFNV 636
F F +
Sbjct: 419 FHFTI 423
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 23/137 (16%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
PLR IL+ADD+ + ++V LR LG + NG L+++R+ L+ Q
Sbjct: 589 PLR---ILLADDNPINQKVGLNVLRRLGYRADVANNG---LEVLRA-LDRQ--------- 632
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEE---KRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
PYD IL+D +MP ++G+E T IRE KR +V +A+T + + +K ++AGMD
Sbjct: 633 PYDIILLDVQMPELDGFETTSSIRERWPLGKRPRV----VAMTGNALLGDREKCLDAGMD 688
Query: 1112 VHLGKPLNRDHLMEAIK 1128
++ KP+ L A++
Sbjct: 689 DYISKPIRIGELQSALE 705
>gi|428771294|ref|YP_007163084.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428685573|gb|AFZ55040.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 1594
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 129/273 (47%), Gaps = 51/273 (18%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS A+ SH+IR + I G L E + ++ L ++ LL ++N ILD
Sbjct: 857 KSEFLASMSHEIRTPMNAIQGFTHLALQEDLSNKQ-KSYLVKIQKACESLLLIINDILDF 915
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAGK+ L ++F + +L DV +L HP KG+E+V D D F GD ++
Sbjct: 916 SKIEAGKLDLEADNFLLDNILTDVANLLHPRIQEKGLELVFDIDDHLDCSFL---GDSLR 972
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L QIL+NL++NA+KFT +G I +
Sbjct: 973 LSQILTNLINNAIKFTEKGQIVI------------------------------------- 995
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLG 605
V Q E+ + F V+DTG GI K+K +F+ + Q + GGTGLGL
Sbjct: 996 ----TVRRQQITEDKITLYFCVEDTGVGIAKDKLSLLFKPFSQADNSITRKYGGTGLGLV 1051
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
I + L+ +MGG I +EN +G+ F F + L
Sbjct: 1052 ISRRLIEIMGGKIWAESQEN--KGSKFHFTINL 1082
Score = 67.0 bits (162), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD ILMD MP M+G EAT++IR+ E +PIIA+TAH + + +++AGM+ H+
Sbjct: 1290 YDAILMDISMPEMDGLEATKRIRKLEGEYFQKLPIIAMTAHAMTGDKELSLKAGMNDHIT 1349
Query: 1116 KPLNRDHLMEAI 1127
KP+N + L E +
Sbjct: 1350 KPINPNQLKETL 1361
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L ILV DD+ ++R+V L V+A +G A++ + G D
Sbjct: 1099 LTSNPILVVDDNSIIRQVITRFLESFSFAVKAVNSGLEAIKELEKGEKD----------- 1147
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDVHL 1114
Y I++D +MP +NG E + I+ N +IP I+ +TAH E + + + L
Sbjct: 1148 YKLIIIDWQMPYLNGIETIQAIK--ANPNITNIPLILMITAHHISELEELKKKQELQHFL 1205
Query: 1115 GKPLNRDHLMEAI 1127
KP+ + L AI
Sbjct: 1206 SKPITKSSLFNAI 1218
>gi|288959269|ref|YP_003449610.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
gi|288911577|dbj|BAI73066.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
Length = 1300
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 142/290 (48%), Gaps = 56/290 (19%)
Query: 355 KQMEATQQ-----AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
K+ EA Q AE S KS AN SH+IR + I GLI L G + + +
Sbjct: 473 KRAEAAMQRARLAAEAASRAKSEFLANMSHEIRTPMNAILGLIHLLQQTELTGRQAD-YV 531
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
+++ V A LLG+LN ILD SKVEAGK++L DF + +LL+ + + A K ++V+
Sbjct: 532 QKVRVSAQSLLGILNDILDFSKVEAGKLELERADFRLDDLLQTLAVIVGSAAQEKDIDVL 591
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
+ L+ GD ++L+QIL NL NA+KFT G + V S
Sbjct: 592 FSVAPDVPLELV---GDPLRLQQILINLAGNAIKFTETGEVVV----------------S 632
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
R L++++ D+ A+ F V DTG GI E+R+ +FE
Sbjct: 633 VR---LRTLA---------------------DDGAV-LDFSVRDTGIGIAPEQRERLFEA 667
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
+ Q GGTGLGL I LVRLM G ++ V+ E G +G+ FRF
Sbjct: 668 FSQGDSSTTRRFGGTGLGLAICARLVRLMNGAMD-VESEPG-KGSVFRFR 715
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 1002 LVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILM 1061
L+ADD+ + R+VA L GA V G A+ VR + DQ P+D +L+
Sbjct: 927 LLADDNAISRQVAREILERAGADVTEAATGRQAVDRVR--MADQ---------PFDAVLL 975
Query: 1062 DCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRD 1121
D +MP M+G+ AT IR + +PIIA+TA + + +++GMD H+ KPL+
Sbjct: 976 DVQMPDMDGFAATAAIRALPVGRR--LPIIAMTASALPADRQRCLDSGMDAHVPKPLDLP 1033
Query: 1122 HLMEAI 1127
L +
Sbjct: 1034 QLFATL 1039
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 991 QAQKPL-RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
Q +P+ R +LV DD+ R V + G V AC +G +A+ D+ +
Sbjct: 735 QPARPVPRDLTVLVVDDNPTAREVLGEIVTAFGWAVTACGDGRSAI--------DEVERA 786
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD-KTIEA 1108
A YD +LMD +MP M+G E R+I + +P+I + + E D +T E
Sbjct: 787 AAAGRAYDVVLMDWKMPGMDGIETARRIHADAG---AGMPMIIVVSGYGRERMDARTEET 843
Query: 1109 GMDVHLGKPLNRDHLMEAIKYLH 1131
+ L KP+ L++A+ +
Sbjct: 844 AISGFLVKPVTASTLLDAVTVAY 866
>gi|406597218|ref|YP_006748348.1| two-component hybrid sensor and regulator [Alteromonas macleodii
ATCC 27126]
gi|406374539|gb|AFS37794.1| two-component hybrid sensor and regulator [Alteromonas macleodii
ATCC 27126]
Length = 707
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 160/342 (46%), Gaps = 64/342 (18%)
Query: 319 ILLIVMTVGVLISMLTFVFKSA-RAARKEMHLCASLIKQMEAT-QQAERKSMNKSLAFAN 376
+ L + T+ +L F+F R ++ SL +Q E++ +A R S KS ++
Sbjct: 166 VYLWLATLALLCIEAAFIFSPMERTVKRSFAKLTSLKEQAESSADEARRASKAKSEFLSS 225
Query: 377 ASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGK 436
SH++R + G+ G+IEL ++ S + L++ LL L+N ILD SK+EAGK
Sbjct: 226 MSHELRTPMNGLFGMIELA-IDNPDKSNI--YLKKAKTAGRQLLVLINDILDISKIEAGK 282
Query: 437 MQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPSDGSVLKFSKVKGDRVKLKQIL 494
+++ + D+ ++L+DVV L RKG+E + DP V +KGD ++ QIL
Sbjct: 283 IKIEQAPVDLLQVLDDVVSLQRVYCQRKGLEFHYLKDPDLPHV-----IKGDITRISQIL 337
Query: 495 SNLLSNAVKFTSEGHISVRAC-VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLE 553
NLLSNA+KFT +G ++++ K+P
Sbjct: 338 HNLLSNAIKFTEQGSVTLKVTYTKRP---------------------------------- 363
Query: 554 AVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQS 609
N +F+V DTG GI K +F+ + Q + GGTGLGL I +
Sbjct: 364 ---------NGNYLSFDVIDTGIGIESSKLDNIFKKFEQADQSTTREYGGTGLGLSIAKQ 414
Query: 610 LVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
L +LM GDI + +G+ F F +A E+ D N +
Sbjct: 415 LAKLMLGDINVTSFVG--QGSTFSFT--MAAEESQLPDINVE 452
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 16/132 (12%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+ K+IL+A+D+ + + + L+ G +NG+ A+ D+G H +
Sbjct: 588 KKKRILLAEDNEINAEIVKTILQSEGYKFLHVKNGKDAV-----------DVGKRH--QF 634
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D ILMDC MP+M G EA+ +R K +V PI+ALTA+ E+ ++ + AGM L K
Sbjct: 635 DLILMDCNMPVMGGIEASTILR---KALEVDTPIVALTANAFAEDKEECLAAGMTDFLAK 691
Query: 1117 PLNRDHLMEAIK 1128
PL++D L+ IK
Sbjct: 692 PLDKDTLLVCIK 703
>gi|170728644|ref|YP_001762670.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
woodyi ATCC 51908]
gi|169813991|gb|ACA88575.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC
51908]
Length = 1245
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 143/293 (48%), Gaps = 53/293 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q AE ++ KS AN SH+IR + I G+++L + E L + A
Sbjct: 721 LEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTPQQEDYLDKAGFSA 779
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DPSDG 475
LL ++N ILD SK+EAGK++L F + ++L+ +DL A KGVE++L P
Sbjct: 780 QSLLRIINDILDFSKIEAGKLELERVSFPLDKVLDHALDLNALKAQEKGVELLLYAPVTA 839
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ ++GD ++L Q+L N+LSNAVKFT G I
Sbjct: 840 GLI----LEGDPLRLGQVLINMLSNAVKFTQSGEI------------------------- 870
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+L + +RD + + F V DTG GI KE+++++F+ + Q
Sbjct: 871 ---------------ELGCEDVGERD-HRITLKFWVRDTGIGISKEQQESLFDAFAQADG 914
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + LV +MGG ++ V E G G+ F F + I E +
Sbjct: 915 STTRKYGGTGLGLSISKHLVSMMGGTMQ-VQSEMG-VGSTFSFTISFEIAEEA 965
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 78/130 (60%), Gaps = 15/130 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D+ + ++VA L+ G V+ +NG+ AL ++ ND Y+ +
Sbjct: 1123 RILLVEDNFINQQVATELLKSAGYEVDVADNGQIALDMIAD--ND-----------YEAV 1169
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP+M+G ATR++R+ NQ +P+IA+TAH + +K+++AGM+ H+ KP+
Sbjct: 1170 LMDIQMPVMDGLTATRELRKH--YNQSELPVIAMTAHAMSGDREKSLDAGMNAHITKPIV 1227
Query: 1120 RDHLMEAIKY 1129
+ L + + Y
Sbjct: 1228 LNELFDTLSY 1237
>gi|320102584|ref|YP_004178175.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
43644]
gi|319749866|gb|ADV61626.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
43644]
Length = 1293
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 157/334 (47%), Gaps = 58/334 (17%)
Query: 347 MHLCASLIKQMEATQ--------------QAERKSMNKSLAFANASHDIRAALAGITGLI 392
+H A ++K + Q QAE + KS+ A SH+IR + + G+
Sbjct: 695 LHTAAGILKALRQRQSQQMAEVELRVAKLQAEEANRAKSVFLATMSHEIRTPMNAVVGMT 754
Query: 393 ELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLED 452
EL ++ E + N LLGL+N ILD SK+E+G+++L E + ++E
Sbjct: 755 ELL-LDTPLTPEQREFTETIRASGNQLLGLINDILDLSKIESGRVELEEGPVRLRLVIER 813
Query: 453 VVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISV 512
++L A KG+E+ DG++ + ++GD ++L+QIL+NLLSNAVK+T G +
Sbjct: 814 CLELVAARAHAKGLELAAR-LDGTLPEV--IRGDDLRLRQILTNLLSNAVKYTDTGEVV- 869
Query: 513 RACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVD 572
L++S H GDL A + + +E V+
Sbjct: 870 --------------LTASWHA----------------GDLSAPLDSPKRSPRLEIA--VE 897
Query: 573 DTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGER 628
D+G GIP ++ +F+ + Q+ GGTGLGL I + LV MGG I + ++ G
Sbjct: 898 DSGIGIPDAQKPRLFQAFQQLDAAGHRRTGGTGLGLAITRKLVEKMGGTIHVENRPGG-- 955
Query: 629 GTCFRFNVFLAIREASANDNNTQGEKELAGGDSA 662
G+ F FN+ + + +D T GGD A
Sbjct: 956 GSRFVFNIIAPLEFQAPSDPKTIATAS-TGGDRA 988
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 20/138 (14%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
++PL K+L+A+D+ + R V L LG +G L+ + LN
Sbjct: 1168 RRPL---KVLIAEDNAVNRVVMSRMLERLGYQPHLANDGPETLEAI---LNQ-------- 1213
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
P+D +LMD +MP ++G E TR +R Q I I+ALTA+ + E+ +EAGMD
Sbjct: 1214 --PFDLVLMDVQMPKLDGLEVTRAVRRRLPLGQQPI-IVALTANATREDRTACLEAGMDD 1270
Query: 1113 HLGKPL---NRDHLMEAI 1127
L KP+ + HL+E +
Sbjct: 1271 FLSKPIRPGDLVHLLERV 1288
>gi|359452219|ref|ZP_09241574.1| sensor protein [Pseudoalteromonas sp. BSi20495]
gi|358050813|dbj|GAA77823.1| sensor protein [Pseudoalteromonas sp. BSi20495]
Length = 1000
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 134/283 (47%), Gaps = 49/283 (17%)
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
E+ + I+ A QA S KS AN SH+IR + G+ G++E+ E G +
Sbjct: 473 ELKVSQRTIELERAIDQALAASQAKSDFVANISHEIRTPMNGVLGMLEMLK-EEGLSEQQ 531
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
L+ N A+ L+ L+N ILD SK+EAGK+ + FDV + D++ RKG
Sbjct: 532 HHYLKLANSSAHSLMNLINDILDFSKIEAGKLDIDNHTFDVVTVCSDMITSLALQGQRKG 591
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP 525
+EV LD D V+ V GD +LKQIL NL++NA KFT +G +S+ IG+
Sbjct: 592 LEVFLDTKD--VID-RMVIGDSHRLKQILINLVNNAFKFTHKGEVSL--------TIGSK 640
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
++ S+ + +F + DTG GI E
Sbjct: 641 YITDSK---------------------------------LLMSFTIKDTGIGIAPENLDR 667
Query: 586 VFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKE 624
+FE + Q GGTGLGL I + L +LMGG+I + K+
Sbjct: 668 LFEVFTQEDSSTTRHFGGTGLGLSICKKLAQLMGGNITVTSKK 710
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 75/130 (57%), Gaps = 12/130 (9%)
Query: 991 QAQKP-LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
+A +P L +L+ DD+M+ VA+ L+H + +G AL++++ L++ +
Sbjct: 867 EAIEPDLSNFNVLLVDDNMINVEVAKAILKHTKVKITTASDGLEALEVLK--LHEGQ--- 921
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEA 1108
+D ILMDC+MP +NGY+ T IR + ++ ++PIIA+TA + ++ + A
Sbjct: 922 -----TFDIILMDCQMPNLNGYDTTSAIRSGKAGSEYSYVPIIAMTASAMEGDRERCLAA 976
Query: 1109 GMDVHLGKPL 1118
GM+ ++ KP+
Sbjct: 977 GMNDYITKPI 986
>gi|256424548|ref|YP_003125201.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
2588]
gi|256039456|gb|ACU63000.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
2588]
Length = 1203
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 50/283 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA QAE S KS AN SH+IR L G+ G +L A ++ + + +N AN
Sbjct: 679 EAKIQAEYASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKTALNETQ-QQYVAIVNQSAN 737
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK+EAGK++L D+ E D+ A +KG+E++L+ S +
Sbjct: 738 SLLSIINDILDFSKIEAGKIELDISKCDIYEFSSQASDILSFQAQQKGLEMLLNVS-PEL 796
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+F + D V+LKQIL NLLSNAVKFT +G I + KP A + +++ R
Sbjct: 797 PRF--MWADIVRLKQILLNLLSNAVKFTEKGEIELEI---KPIAYPSVGMTTIR------ 845
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
FEV DTG GI K K++ +FE ++Q
Sbjct: 846 -------------------------------FEVRDTGIGIRKNKQEKIFEAFLQEDIST 874
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ GGTGLGL I L+ LMG +++ + +G+ F F++
Sbjct: 875 TKRYGGTGLGLSISNKLLALMGSKLQL--ESTTGKGSTFFFDL 915
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 17/127 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACE--NGEAALQLVRSGLNDQRDLGAPHILPYD 1057
+IL+A+D+ + +A +R + + E NG A++ LP D
Sbjct: 1078 RILIAEDNPINMLLATTIIRKIAPASQIVEAKNGREAVE------------SCEQHLP-D 1124
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
I MD +MPI+NGYEAT +IRE VHIPIIALTA E DK + AGMD + KP
Sbjct: 1125 MIFMDIQMPIVNGYEATGRIRELSP--HVHIPIIALTAGNVKGERDKCLAAGMDDFVTKP 1182
Query: 1118 LNRDHLM 1124
+L+
Sbjct: 1183 FVESNLV 1189
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 19/172 (11%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGA 1023
L+ +++G+GS+ + + EDG+ + + +L+ DD++ R + + L+
Sbjct: 899 LQLESTTGKGSTFFFDLNVRTEDGQPIEWGNMDLVRDVLIVDDNINNRTILKTMLQLKNI 958
Query: 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKR 1083
+ NG ALQ + + + YD ILMD MP+M+G E RKIRE
Sbjct: 959 RFDEAANGIEALQFLMTKQH------------YDVILMDYHMPVMDGIETIRKIRENFSE 1006
Query: 1084 NQVHIPIIALTAHISGEEADKTIEAGMDVH----LGKPLNRDHLMEAIKYLH 1131
II L H S ++ +K I+A ++H L KP+ + A+ +L+
Sbjct: 1007 LDKDPAIILL--HSSADD-EKLIKACEELHVSQRLLKPIKIQEMFHALSHLY 1055
>gi|392424058|ref|YP_006465052.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase,Hpt domain-containing protein
[Desulfosporosinus acidiphilus SJ4]
gi|391354021|gb|AFM39720.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase,Hpt domain-containing protein
[Desulfosporosinus acidiphilus SJ4]
Length = 772
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 149/299 (49%), Gaps = 59/299 (19%)
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSI 426
+++KSL AN SH+IR + GI G +EL + + P +E + +R+ + LL ++N I
Sbjct: 148 NISKSLFLANMSHEIRTPMNGIMGFLELLNM-SNPSTEQKEYIREAKSASAVLLYVINDI 206
Query: 427 LDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFS---KV 483
LD SK+EAGK+ + E F +ED V L A K +E+ S++ + +V
Sbjct: 207 LDFSKIEAGKLTMEESCFKTRTAIEDAVSLHVHKAFEKNLEL------HSMINANVPEEV 260
Query: 484 KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFY 543
GD +L+Q+L+NL+ NAVKFT +G ISV ++ C+
Sbjct: 261 IGDAQRLRQVLNNLIGNAVKFTEKGEISV------------------------TVDCI-- 294
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GG 599
+ DE A+ FE+ DTG GI +E + +F+++ QV GG
Sbjct: 295 --------------EEEDEIAL-LKFEIKDTGIGISQEDFQKLFQSFNQVDSSTTRKYGG 339
Query: 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAG 658
TGLGL I + LV LM G+IE K G+ F+F+V I + + N KELAG
Sbjct: 340 TGLGLAISKELVSLMRGNIEF--KSILGEGSNFKFDVRFKIAKRVPDHNYVF--KELAG 394
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 80/132 (60%), Gaps = 14/132 (10%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R KIL+ +D+ + R++ L+ T + NG A Q V+ ++D Y
Sbjct: 541 RKPKILLVEDNEINRKIVTAVLKTRDITCDVVINGLDAYQAVK-----KKD--------Y 587
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D +LMDC+MP+M+GY+ T KIRE E ++ H IIA+TA++ + +K I+AGMD ++GK
Sbjct: 588 DIVLMDCQMPVMDGYKCTAKIREMEGSSK-HTTIIAMTANVMEGDKEKCIQAGMDDYIGK 646
Query: 1117 PLNRDHLMEAIK 1128
P+N D+L + I+
Sbjct: 647 PINFDNLFQIIE 658
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATV-EACENGEAALQLV-RSGLNDQRDLGAP 1051
K L G IL+ DD+ RR+A L +G V EA + GEA ++ + D+ D+
Sbjct: 390 KELAGVNILIIDDNPSNRRIAISYLGGMGCKVFEAKDPGEAITTIISKVSTRDKIDIA-- 447
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
L+D MP M+G+E ++ + + + ++ A G + K + G
Sbjct: 448 --------LIDYRMPGMSGFELATSLKAIPFASDIKLILLTSAAQSGGAKEAKQL--GFA 497
Query: 1112 VHLGKPLNRDHLMEAI 1127
+L KP+ RD L+ I
Sbjct: 498 GYLIKPIKRDDLLNCI 513
>gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 1287
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 180/395 (45%), Gaps = 81/395 (20%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE + +KS AN SH+IR L I G L +E ++ L ++N A
Sbjct: 654 AKEEAEAGNRSKSEFLANMSHEIRTPLNAIIGFNTLA-LETQLTAQQHDYLSRVNFAATS 712
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N ILD SK+EAGK++ F+ E+L+++++LF A KG+ + L SD
Sbjct: 713 LLRIINEILDFSKIEAGKLEFEHAVFNPREVLQNIINLFQQQAAHKGLSLELHCSDNLP- 771
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+++ GD V+L Q+L NL+ NAVKFT +G +S+ A P+ G +++
Sbjct: 772 --AELVGDSVRLGQVLVNLVGNAVKFTEQGAVSLYA---SPTEYGCENVT---------- 816
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
F V DTG G+ +K +F+ + Q +
Sbjct: 817 ----------------------------LEFSVRDTGIGLAPDKLTKLFQPFTQADGSIT 848
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV---FLAIREASAND-NNT 650
GGTGLGL I + +V L GG I + E G G+ F FN+ F A A+A + T
Sbjct: 849 RKFGGTGLGLSISKRIVELTGGHI-WAESEPG-YGSVFSFNMPFSFPAAGSAAARQCSAT 906
Query: 651 QGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHE--GSHVVLL 708
Q EL L +AP L++R PG+ E G ++L+
Sbjct: 907 QQPAELPA-------------LLPYQAPPQRLTVR----------PGAADELAGLRILLV 943
Query: 709 IANEERRRIAQKFMENLGINV-SAVSRWERLHSTL 742
NE R +A + + G + SAV+ E L L
Sbjct: 944 EDNEMNRTLAVELLRRRGAQIDSAVNGCEALARIL 978
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 78/140 (55%), Gaps = 13/140 (9%)
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
R A L G +IL+ +D+ M R +A LR GA +++ NG AL +
Sbjct: 928 RPGAADELAGLRILLVEDNEMNRTLAVELLRRRGAQIDSAVNGCEALARILH-------- 979
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA 1108
PYD +LMD +MP M+GYEATRKIR + + + +PIIA+TAH EE D+ E
Sbjct: 980 ---EAAPYDIVLMDLQMPGMDGYEATRKIRADLRFSA--LPIIAVTAHAMVEERDRCREV 1034
Query: 1109 GMDVHLGKPLNRDHLMEAIK 1128
GM+ +L KPLN ++ I+
Sbjct: 1035 GMNGYLTKPLNVPEMINLIR 1054
>gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 968
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 142/284 (50%), Gaps = 52/284 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
++ ++AE + KS+ AN SH+IR L GI G+++L P E + L N
Sbjct: 578 QSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKT-TDPNDEQKEYLLGAIRSTN 636
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
L LL+ ILD S++EAGKMQ++E +FD+ + + + +LF A KG ++L+ ++
Sbjct: 637 RLTRLLSDILDISRIEAGKMQIVESEFDIKMIWDSISELFDMEARGKG--LLLEFRWDNI 694
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L V GD +L+QIL NL+ NA+KFT +G I + A + S+
Sbjct: 695 LPMLLV-GDEARLRQILFNLVGNAIKFTEKGKIRIDASLLPRSS---------------- 737
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
++++ V DTG GI +E+ K +FE +VQ EG
Sbjct: 738 ------------------------DSSVRVLVTVSDTGIGISEEQLKDIFEPFVQA-EGS 772
Query: 598 -----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
G GLGL IV+ LV+L+ GDI I D GE GT F ++
Sbjct: 773 YTRRFQGAGLGLSIVRRLVKLLDGDISI-DSTPGE-GTTFYLSL 814
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 14/130 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D + + L G +V A ++G+ ALQ R D +D I
Sbjct: 842 RILLAEDDSLSSITCKRMLEKSGYSVTAVKDGQEALQ--RLTKED-----------FDLI 888
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMD +MP+M+G EAT+ IR + IPI+A+TA+ + + + AGMD ++ KP+
Sbjct: 889 LMDVQMPVMDGVEATKAIRGASNLGAKSSIPIVAMTAYAMTGDKESFLAAGMDDYISKPV 948
Query: 1119 NRDHLMEAIK 1128
++ L+E I+
Sbjct: 949 DKAALVEVIE 958
>gi|373854677|ref|ZP_09597475.1| integral membrane sensor hybrid histidine kinase [Opitutaceae
bacterium TAV5]
gi|372472544|gb|EHP32556.1| integral membrane sensor hybrid histidine kinase [Opitutaceae
bacterium TAV5]
Length = 846
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 128/279 (45%), Gaps = 56/279 (20%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET--NLRQMNVCAND 418
+ AE S KS AN SH++R + I G E+ +AG + +LR+++
Sbjct: 343 ELAEEASRTKSAFLANMSHELRTPMNAIIGYSEMLIEDAGDTGNDDAIPDLRKIHTAGKH 402
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHP-VAMRKGVEVVLDPSDGSV 477
LLGL+N +LD SK+EAGKM L ED DV L+ +V P V + VV P D
Sbjct: 403 LLGLINDVLDISKIEAGKMTLYLEDADVHALVSEVAATIRPLVEQNRNTLVVECPPD--- 459
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ D K++Q L NLL NA KFT G I++ +++ RH
Sbjct: 460 --LGSLHADITKVRQTLFNLLGNAAKFTHAGRITL-------------AVARKRH----- 499
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+N FTF V DTG G+ +E+ +F+ +VQ
Sbjct: 500 ------------------------QNRDWFTFRVADTGIGMTREQLGKLFQAFVQADAST 535
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GGTGLGL I + +LMGGDI + E G+ GT F
Sbjct: 536 TRKYGGTGLGLAISRKFCQLMGGDIAVA-SEPGQ-GTAF 572
>gi|358637994|dbj|BAL25291.1| hypothetical protein AZKH_2992 [Azoarcus sp. KH32C]
Length = 744
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 144/303 (47%), Gaps = 60/303 (19%)
Query: 351 ASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY---VEAGPGSELET 407
A+L++ A +QAE + + AN SH+IR + I G+ EL VEA P S L T
Sbjct: 188 AALVR---AKEQAESANRARGFFLANMSHEIRTPMNAILGMTELALDATVEAEPRSYLTT 244
Query: 408 NLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE 467
+ A LL ++N +LD SK+EAGK++L V +L DVV F A KG+E
Sbjct: 245 ----VKSSAESLLNIINDVLDLSKIEAGKVELESVPMSVRTILNDVVRAFAVSAHGKGLE 300
Query: 468 VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
++LD + ++ GD +L+QIL+NL+ NA+KFT G + V+A V +
Sbjct: 301 IMLDVAPEMP---DRLFGDPTRLRQILANLIGNAIKFTERGEVLVKAWVLR--------- 348
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
R G ++ F V DTG GI + + +F
Sbjct: 349 ---RAGM-----------------------------SLYLQFAVCDTGIGIAADHHEQIF 376
Query: 588 ENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ + Q GGTGLGL I LV+L+ G I + + E G +GT F F V A +
Sbjct: 377 DAFTQADVSTARRFGGTGLGLAISNQLVKLLDGQIWL-ESEPG-KGTSFYFTVRFAADQT 434
Query: 644 SAN 646
S++
Sbjct: 435 SSS 437
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 29/160 (18%)
Query: 976 RYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAAL 1035
R + +DGE PL +L+ +D+ + + +A L G V NG AL
Sbjct: 584 RLDDVRFQNDDGE------PL---NVLLVEDTPVNQTLAVKLLAKAGHRVTVAANGREAL 634
Query: 1036 QLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK-------RNQVHI 1088
+ + QR +D ILMD +MP+++G EAT IR E ++Q
Sbjct: 635 E----RFDRQR---------FDLILMDVQMPVLDGMEATTAIRAREMNRSWAMGQHQRVS 681
Query: 1089 PIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
I A+TAH + ++ + AGMD +L KP+ R L E +K
Sbjct: 682 YIAAMTAHAMEGDRERCLAAGMDDYLSKPIRRKALDEVLK 721
>gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
Length = 951
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 145/293 (49%), Gaps = 63/293 (21%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS-ELETNLRQMNVCA 416
+A +AE ++ KS AN SH+IR + GI G +EL +E+ S E +R+ +
Sbjct: 315 KAKVEAESANIAKSQFLANMSHEIRTPMNGIFGFLEL--LESSNLSLEQREFVREAKSAS 372
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPSD 474
+ LL ++N ILD SK+EA K+ L F++ ++ED V LF P + KG+++ ++DP+
Sbjct: 373 DILLNIINDILDFSKIEAKKLVLENISFNLRTVIEDAVSLFVPKTLEKGIQLYTIIDPTI 432
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
+V GD +LKQIL+NLLSN VKFT G I+++
Sbjct: 433 P-----DEVIGDPSRLKQILNNLLSNGVKFTDAGEIAIK--------------------- 466
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
V+ + + TFEV DTG GI + + +F+++ Q
Sbjct: 467 --------------------VDYFEEENEIALLTFEVRDTGIGISGKDIQKLFKSFNQAD 506
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDI---EIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I + LV +M G+I ++DK G+ FRF V L I
Sbjct: 507 ASTTRKYGGTGLGLSICRELVNMMDGEITVDSVLDK-----GSTFRFCVRLKI 554
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 14/120 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D+ + R++ L+ G T + +G+ AL+ V YD +
Sbjct: 720 RILLAEDNEVNRKIFISMLKSRGITCDVALDGKEALRKVSEE-------------DYDIV 766
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MDC+MP+M+GYEAT +IR E+ N+ H I+A+TA+ +++K I++GMD ++ KP+N
Sbjct: 767 FMDCQMPVMDGYEATAEIRRIEE-NRKHTKIVAVTANAMEGDSEKCIKSGMDNYITKPIN 825
Score = 41.2 bits (95), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+ D+ R++ L+ G + + A+ + S ND ++ ++
Sbjct: 573 ILIVDNDENSRKITSSYLKGTGLHIIEVDGAGEAISTIISN-NDTKN-------KISIVI 624
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPI---IALTAHISGEEAD--KTIEAGMDVHLG 1115
++CE+P MN YE R ++ +IPI I L +S + D +E G +L
Sbjct: 625 IECEIPGMNCYELARTLK--------NIPIAKNIKLILLMSRYKGDFKAAMEYGFSSYLT 676
Query: 1116 KPLNRDHLMEAI 1127
KPL RD L++ I
Sbjct: 677 KPLKRDDLLDCI 688
>gi|13359157|dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thaliana]
Length = 1080
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/361 (28%), Positives = 168/361 (46%), Gaps = 43/361 (11%)
Query: 309 LVHRTSKRALILLIVMTVGVLISMLTFV--FKSARAARKEMHLCASLIKQMEATQQAERK 366
++ R ++A I L V+T L + F+ + AA + + + E +AE
Sbjct: 410 MICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAA 469
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGL 422
+ KS A SH+IR + GI G++ + +EL + R VC L+ L
Sbjct: 470 DVAKSQFLATVSHEIRTPMNGILGMLAMLL-----DTELSSTQRDYAQTAQVCGKALIAL 524
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N +LD +K+EAGK++L FD+ +L+DV+ LF + KG+E+ + SD
Sbjct: 525 INEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVP---EI 581
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS------------AIGNPSLSSS 530
VKGD + +QI+ NL+ N+VKFT +GHI V+ + + S + + S
Sbjct: 582 VKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVS 641
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAM-EFTF--------EVDDTGKGIPKE 581
+ ++S Y+ R ++ +E ++ EF ++DTG GIP
Sbjct: 642 KQSSYNTLSG--YEAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLV 699
Query: 582 KRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
+ VF ++Q GGTG+GL I + LV LM G I + + + G+ F F
Sbjct: 700 AQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPH--IGSTFWFTAV 757
Query: 638 L 638
L
Sbjct: 758 L 758
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 24/179 (13%)
Query: 961 SVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKP------LRGKKILVADDSMMLRRVA 1014
+V++K +S G+ + E+ + + + P L GKKILV DD+++ RRVA
Sbjct: 901 TVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVNRRVA 960
Query: 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074
L+ GA V E+G+ AL L L PH +D MD +MP M+G+EAT
Sbjct: 961 AGALKKFGAEVVCAESGQVALGL----------LQIPHT--FDACFMDIQMPQMDGFEAT 1008
Query: 1075 RKIREEEKRN------QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
R+IR EK + H+PI+A+TA + ++ +++GMD ++ KP ++L +++
Sbjct: 1009 RQIRMMEKEAKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSV 1067
>gi|407684234|ref|YP_006799408.1| two-component hybrid sensor and regulator [Alteromonas macleodii
str. 'English Channel 673']
gi|407245845|gb|AFT75031.1| two-component hybrid sensor and regulator [Alteromonas macleodii
str. 'English Channel 673']
Length = 707
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 160/342 (46%), Gaps = 64/342 (18%)
Query: 319 ILLIVMTVGVLISMLTFVFKSA-RAARKEMHLCASLIKQMEAT-QQAERKSMNKSLAFAN 376
+ L + T+ +L F+F R ++ SL +Q E++ +A R S KS ++
Sbjct: 166 VYLWLATLALLCIEAAFIFSPMERTVKRSFAKLTSLKEQAESSADEARRASKAKSEFLSS 225
Query: 377 ASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGK 436
SH++R + G+ G+IEL ++ S + L++ LL L+N ILD SK+EAGK
Sbjct: 226 MSHELRTPMNGLFGMIELA-IDNPDKSNI--YLKKAKTAGRQLLVLINDILDISKIEAGK 282
Query: 437 MQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPSDGSVLKFSKVKGDRVKLKQIL 494
+++ + D+ ++L+DVV L RKG+E + DP V +KGD ++ QIL
Sbjct: 283 IKIEQAPVDLLQVLDDVVSLQRVYCQRKGLEFHYLKDPDLPHV-----IKGDITRISQIL 337
Query: 495 SNLLSNAVKFTSEGHISVRAC-VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLE 553
NLLSNA+KFT +G ++++ K+P
Sbjct: 338 HNLLSNAIKFTEQGSVTLKVTYTKRP---------------------------------- 363
Query: 554 AVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQS 609
N +F+V DTG GI K +F+ + Q + GGTGLGL I +
Sbjct: 364 ---------NGNYLSFDVIDTGIGIESSKLDNIFKKFEQADQSTTREYGGTGLGLSIAKQ 414
Query: 610 LVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
L +LM GDI + +G+ F F +A E+ D N +
Sbjct: 415 LAKLMLGDINVTSFVG--QGSTFSFT--MAAEESQLPDINVE 452
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 16/132 (12%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+ K+IL+A+D+ + + + L+ G +NG+ A+ D+G H +
Sbjct: 588 KKKRILLAEDNEINAEIVKTILQSEGYKFLHVKNGKDAV-----------DVGKRH--QF 634
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D ILMDC MP+M G EA+ +R K +V PI+ALTA+ E+ ++ + AGM L K
Sbjct: 635 DLILMDCNMPVMGGIEASTILR---KALEVDTPIVALTANAFAEDKEECLAAGMTDFLAK 691
Query: 1117 PLNRDHLMEAIK 1128
PL++D L+ IK
Sbjct: 692 PLDKDTLLVCIK 703
>gi|359443561|ref|ZP_09233397.1| sensor protein [Pseudoalteromonas sp. BSi20429]
gi|358034607|dbj|GAA69646.1| sensor protein [Pseudoalteromonas sp. BSi20429]
Length = 986
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 140/301 (46%), Gaps = 51/301 (16%)
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
E+ + ++ A QA S KS AN SH+IR + G+ G++E+ E G +
Sbjct: 458 ELKVSQRTVELERAIDQALAASQAKSDFVANISHEIRTPMNGVLGMLEMLK-EDGLSEQQ 516
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
L+ N AN L+ L+N ILD SK+EAGK+ + FDV + D++ RKG
Sbjct: 517 YHYLKLANSSANSLMNLINDILDFSKIEAGKLDIDNHTFDVVTVCSDMISSLALQGQRKG 576
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP 525
+EV LD D + V GD +LKQIL NL++NA KFT G +S+ +G+
Sbjct: 577 LEVFLDTKD---VVDRMVIGDSHRLKQILINLVNNAFKFTHRGEVSL--------TVGSK 625
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
++ S+ + +F + DTG GI E
Sbjct: 626 YITDSK---------------------------------LLMSFTIKDTGIGIAPENIDK 652
Query: 586 VFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR 641
+FE + Q GGTGLGL I + L +LMGG+I ++ ++ G+ F V L +
Sbjct: 653 LFEVFTQEDSSTTRHFGGTGLGLSICKKLAQLMGGNITVISEKGA--GSTFTATVELHVA 710
Query: 642 E 642
+
Sbjct: 711 Q 711
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 991 QAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGA 1050
Q + L IL+ DD+M+ VA+ L+ + +G AL+ +R
Sbjct: 854 QVEPDLSAYHILLVDDNMINIEVAKAILKRTKVKITCASDGVEALEALRENTEQ------ 907
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAG 1109
+D ILMDC+MP +NGY+ T +IR + + +IPIIA+TA + ++ + AG
Sbjct: 908 ----AFDVILMDCQMPNLNGYDTTSEIRNSKAGVDYTYIPIIAMTASAMEGDRERCLTAG 963
Query: 1110 MDVHLGKPL 1118
M+ ++ KP+
Sbjct: 964 MNDYITKPI 972
>gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 1038
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 156/319 (48%), Gaps = 53/319 (16%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
A +AE + KS AN SH+IR A+ G+TGL+ +EA +ET +
Sbjct: 279 AKHEAEAANQAKSQFLANMSHEIRTPMNAVIGMTGLLLNTPLEAQQQDFVET----IRSS 334
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE---VVLDP 472
+ LL L+N ILD SK+EAGK+ L ++ F++ +E+ + + A K +E ++ P
Sbjct: 335 GDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASKASEKNLELAYLINPP 394
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+ ++L GD +L+Q+L NLL+NA+KFT EG + V K
Sbjct: 395 TPTAIL------GDITRLRQVLVNLLNNALKFTGEGEVVVYVSSKP-------------- 434
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+ K+ A DLE + A E F+V DTG GIP +K + +F+++ Q
Sbjct: 435 --------IESKDLDAESDLEVIAEA----TPYEIQFDVKDTGIGIPPDKLERLFKSFSQ 482
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA-----IREA 643
V GGTGLGL I + L LMGG I + + + G+ F F + + +
Sbjct: 483 VDASTTRKFGGTGLGLAISKQLSELMGGKIWVSSEVS--VGSTFSFTITASEIPNYVSPK 540
Query: 644 SANDNNTQGEKELAGGDSA 662
+A+D G++ L D+A
Sbjct: 541 AASDVQLAGKQLLIVDDNA 559
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 19/136 (13%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q PLR IL+A+D ++ ++VA + L+ LG + NG L+++ + L Q
Sbjct: 691 QHPLR---ILLAEDMVVNQKVALLTLKQLGYRADVANNG---LEVIEA-LERQA------ 737
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREE-EKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
YD +LMD +MP M+G ATR++ + ++ H IIA+TA+ + + ++AGMD
Sbjct: 738 ---YDVVLMDVQMPEMDGLTATREVCQRWSPEDRPH--IIAMTANAMQGDREMCLDAGMD 792
Query: 1112 VHLGKPLNRDHLMEAI 1127
++ KP+ L + +
Sbjct: 793 AYITKPVRIHELRDVL 808
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK++L+ DD+ R + + + G A ++G AL+ ++ G+N
Sbjct: 547 LAGKQLLIVDDNATNREILSLQAQSWGMLTCAVKSGIKALEWLQRGVN------------ 594
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D ++D +MP M+G KIR E N +P++ L++ + + + L
Sbjct: 595 FDLAVLDMQMPEMDGVTLAEKIRAEP--NGKTLPLVVLSSLGQDDIRARAGDINFSAILN 652
Query: 1116 KPLNRDHL 1123
KP+ + L
Sbjct: 653 KPVQQAQL 660
>gi|119483406|ref|ZP_01618820.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
gi|119458173|gb|EAW39295.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
Length = 1627
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 178/359 (49%), Gaps = 40/359 (11%)
Query: 289 EVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMH 348
++ G+ + Y A PR+ S+ +++ I + +GV + + K+ + A +E+
Sbjct: 1064 QLWGLLATYQNATPRQW------EESEIRIMVQIGIQLGVAVQQAELLTKTQQQA-EELQ 1116
Query: 349 LCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN 408
L A + A+ + KS AN SH++R L I G +L + + E +
Sbjct: 1117 L---------AKETADAANKAKSEFLANMSHELRTPLNAILGFTQLMHNDPALSGEYQQY 1167
Query: 409 LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
+ ++ LL L+N IL+ SK+EAG++ L E FD+ LL + ++ A KG+++
Sbjct: 1168 IHIISQAGEYLLNLINDILEMSKIEAGQLTLNENCFDLHCLLNSLEEMLQLKAKLKGLQL 1227
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
D D +V +F + D KL+Q+L NLL+NA+KFT G++++R P L
Sbjct: 1228 QFD-CDLNVPQF--IATDDKKLRQVLINLLNNAIKFTESGYVTLR-------VFSQPLL- 1276
Query: 529 SSRHGFL--QSISCLFYKNKKARGDLEAVNAAQRDE-NAMEFT---FEVDDTGKGIPKEK 582
+HG + S L + E+++ A + N +E FEV+DTG GI +
Sbjct: 1277 --KHGSFSGDNQSELVKQLTPILPASESLSEAPTNHPNHLELIPIYFEVEDTGLGIAPHE 1334
Query: 583 RKTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+FE + Q + G GTGLGL I Q V+LMGG+I++ + G+ F F + +
Sbjct: 1335 LDRLFEAFSQTEAGFKSSEGTGLGLPISQRFVQLMGGEIKVSSQPGV--GSIFAFKIIV 1391
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 23/167 (13%)
Query: 962 VLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHL 1021
+++K +S+ S Y Q + G +Q R +ILV +D R + L+ +
Sbjct: 1389 IIVKPADSTSVESVNYSQKVV----GLATQQ----RIDRILVVEDKFSNRLLLLKLLQSI 1440
Query: 1022 GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEE 1081
G V+ NG+ A+ + S P D I MD MP+MNGYEAT+ I+
Sbjct: 1441 GFDVKEAHNGQEAITIWSSW--------KP-----DLIFMDIRMPVMNGYEATQYIKSTP 1487
Query: 1082 KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ NQ IIALTA E+ + AG D + KP + ++ I+
Sbjct: 1488 EGNQT--VIIALTASAFEEDRQMILSAGCDDFIRKPFQEEEILTVIR 1532
>gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506]
gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506]
Length = 1823
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 134/273 (49%), Gaps = 38/273 (13%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNV 414
+A Q AE + KS A SH+IR A+ G+TGL L ++ P E + +
Sbjct: 1029 QARQAAEVANRAKSEFLATMSHEIRTPMNAVIGMTGL--LLDMDLTP--EQRDFVETIRT 1084
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
+ LL ++N ILD SK+E+GKM L + F++ +E+ +DL P A KG+E+ D
Sbjct: 1085 SGDALLTIINDILDFSKIESGKMDLEQHPFELRTCIEESLDLLAPKASEKGLELAY-LID 1143
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
SV SKV GD +L+QIL NLL NAVKFT G I V +K S RHG
Sbjct: 1144 SSVP--SKVLGDVTRLRQILVNLLGNAVKFTEAGEIVVSVTARK---------ISERHG- 1191
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+ + L N + E V DTG GIP ++ +F+ + QV
Sbjct: 1192 -EELYKLPLSNYQV-------------PVPYEIQIAVKDTGIGIPPDRMDRLFKAFSQVD 1237
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDK 623
GGTGLGL I Q L +MGG + +V K
Sbjct: 1238 ASTTRQYGGTGLGLAISQRLSEMMGGKMWVVSK 1270
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 14/128 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D+++ ++VA L +G + NG AL+ +R YD +
Sbjct: 1534 RILLAEDNLVNQKVATHLLERIGYRADIAGNGLEALEALRKQF-------------YDVV 1580
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP M+G EATR+I +E Q+ IIA+TA+ + +K + AGM+ ++ KP+
Sbjct: 1581 LMDVQMPQMDGLEATRRICQEWP-EQLRPRIIAMTANAMQGDREKCLAAGMNDYITKPVR 1639
Query: 1120 RDHLMEAI 1127
R+ L A+
Sbjct: 1640 REELANAL 1647
>gi|392532646|ref|ZP_10279783.1| sensor protein [Pseudoalteromonas arctica A 37-1-2]
Length = 1012
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 140/301 (46%), Gaps = 51/301 (16%)
Query: 346 EMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL 405
E+ + ++ A QA S KS AN SH+IR + G+ G++E+ E G +
Sbjct: 484 ELKVSQRTVELERAIDQALAASQAKSDFVANISHEIRTPMNGVLGMLEMLK-EDGLSEQQ 542
Query: 406 ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
L+ N AN L+ L+N ILD SK+EAGK+ + FDV + D++ RKG
Sbjct: 543 YHYLKLANSSANSLMNLINDILDFSKIEAGKLDIDNHTFDVVTVCSDMISSLALQGQRKG 602
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP 525
+EV LD D + V GD +LKQIL NL++NA KFT G +S+ +G+
Sbjct: 603 LEVFLDTKD---VVDRMVIGDSHRLKQILINLVNNAFKFTHRGEVSL--------TVGSK 651
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
++ S+ + +F + DTG GI E
Sbjct: 652 YITDSK---------------------------------LLMSFTIKDTGIGIAPENIDK 678
Query: 586 VFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR 641
+FE + Q GGTGLGL I + L +LMGG+I ++ ++ G+ F V L +
Sbjct: 679 LFEVFTQEDSSTTRHFGGTGLGLSICKKLAQLMGGNITVISEKGA--GSTFTATVELHVA 736
Query: 642 E 642
+
Sbjct: 737 Q 737
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 991 QAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGA 1050
Q + L IL+ DD+M+ VA+ L+ + +G AL+ +R
Sbjct: 880 QVEPDLSAYHILLVDDNMINIEVAKAILKRTKVKITCASDGVEALEALRENTEQ------ 933
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAG 1109
+D ILMDC+MP +NGY+ T +IR + + +IPIIA+TA + ++ + AG
Sbjct: 934 ----AFDVILMDCQMPNLNGYDTTSEIRNSKAGVDYTYIPIIAMTASAMEGDRERCLTAG 989
Query: 1110 MDVHLGKPL 1118
M+ ++ KP+
Sbjct: 990 MNDYITKPI 998
>gi|344343742|ref|ZP_08774609.1| Hpt sensor hybrid histidine kinase [Marichromatium purpuratum 984]
gi|343804726|gb|EGV22625.1| Hpt sensor hybrid histidine kinase [Marichromatium purpuratum 984]
Length = 1120
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 154/325 (47%), Gaps = 53/325 (16%)
Query: 319 ILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQME-ATQQAERKSMNKSLAFANA 377
LL+ T +LI+++ ++ A ++E L +L ME A AE+ + KS AN
Sbjct: 335 FLLVNATAYLLIAVIAWLSSRMAALQREARLQLALKDSMERARDAAEQANAAKSQFLANM 394
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKM 437
SH+IR L + GL L + + + +R + LLG++N ILD SK+EAG++
Sbjct: 395 SHEIRTPLNAVLGLAHLLGDDPLNTEQRDCVIR-IQSAGKALLGVVNDILDLSKIEAGEL 453
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
L + F VG+L + + + A KG+ V L + + GD +L+QIL NL
Sbjct: 454 VLEQIPFSVGDLCRESLGIVSEQAGEKGLTVELQIATTVP---DILVGDATRLRQILLNL 510
Query: 498 LSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNA 557
L+NAVKFT G I++RA +A
Sbjct: 511 LTNAVKFTPSGSITLRA-----------------------------------------SA 529
Query: 558 AQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRL 613
++ D + EV+DTG GIP+ R+ +F +VQ + GG+GLGL IV+ +V
Sbjct: 530 SEHDHRTL-LHLEVEDTGIGIPETVRERLFAPFVQADDSTTRRFGGSGLGLAIVRQIVER 588
Query: 614 MGGDIEIVDKENGERGTCFRFNVFL 638
MGG + + E GE G+ FR L
Sbjct: 589 MGGRVSLESTE-GE-GSTFRIEAPL 611
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ DDS + VA L GA V C NG+ AL+ R GL D+R +D +
Sbjct: 780 RILLIDDSTLNLDVARHILERQGAEVRTCGNGQEALE--RLGLPDER---------FDAV 828
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+D +MP+M+G R IR + + + +P+IALTA E + + AGM+ +L KP
Sbjct: 829 LLDVQMPVMDGITTVRAIRNQLRLER--LPVIALTAGALSSERQRALAAGMNDYLTKPFE 886
Query: 1120 RDHLMEAIK 1128
D ++ +++
Sbjct: 887 PDQMVRSLR 895
>gi|374299794|ref|YP_005051433.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
africanus str. Walvis Bay]
gi|332552730|gb|EGJ49774.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
africanus str. Walvis Bay]
Length = 500
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 147/308 (47%), Gaps = 52/308 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+ A QAE + KS AN SH++R + GI G IEL ++ P + + L A
Sbjct: 110 LRARAQAEAANKAKSDFLANMSHELRTPMNGIIGSIELALMKE-PSTSVRNYLDMGRKSA 168
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+LL ++N ILD SK+EAGK +L FD+ + + D+V+ +A RKGV+ + D
Sbjct: 169 LNLLDIVNDILDLSKIEAGKFELQRIPFDLDQCVTDIVEALEGIAERKGVD-LRQGIDSE 227
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V + ++ GD V+LKQ+L+NL+ NA+KFT +G I V
Sbjct: 228 VPR--RLVGDAVRLKQVLTNLIGNAIKFTDQGRILVNVE--------------------- 264
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK-- 594
+A Q + + F V DTG GI ++ K VF+++ Q
Sbjct: 265 -------------------DAGQGSDGRVRIRFSVRDTGIGIAPDRIKHVFDSFYQANIE 305
Query: 595 --EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF--LAIREASANDNNT 650
GGTGLGL I + LV +M G+I V+ GE G+ F F LA E + T
Sbjct: 306 NLAKYGGTGLGLAISKRLVEMMDGEIG-VESSLGE-GSHFFFTALFGLAGAEQAKMPEPT 363
Query: 651 QGEKELAG 658
+ E E AG
Sbjct: 364 RAEAEKAG 371
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 15/141 (10%)
Query: 989 RSQAQKP-LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
R++A+K LRG +IL+A+D+ + + VA L+ G V A ENG AL+ + S
Sbjct: 364 RAEAEKAGLRGLEILLAEDNEINQLVAVELLQKKGHRVTAVENGAKALEALSSN------ 417
Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE 1107
+D +LMD MP M+G AT+ IR + + IP++ALTA+ E+ + +
Sbjct: 418 -------TFDLVLMDVRMPEMDGEAATKAIRGGQAGDP-DIPVVALTAYALKEDREHLLA 469
Query: 1108 AGMDVHLGKPLNRDHLMEAIK 1128
AGMD ++ KP++ D L I+
Sbjct: 470 AGMDDYISKPIDPDELESVIR 490
>gi|428211707|ref|YP_007084851.1| signal transduction histidine kinase [Oscillatoria acuminata PCC
6304]
gi|428000088|gb|AFY80931.1| signal transduction histidine kinase [Oscillatoria acuminata PCC
6304]
Length = 713
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 135/272 (49%), Gaps = 30/272 (11%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEA-GPGSE-LETNLRQMNVCANDLLGLLNSIL 427
KS AN SH++R L I G E+ +A G E L +L++++ LLG++N IL
Sbjct: 176 KSQFLANMSHELRTPLNAILGYSEMLQEDAEDTGQEDLSLDLQKIHGAGKHLLGIINDIL 235
Query: 428 DTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR--KGVEVVLDPSDGSVLKFSKVKG 485
D SK+EAG+M+L E FD+ L++VV P+ + + V P GS+
Sbjct: 236 DLSKIEAGRMELYLEPFDIESTLQEVVSTIEPLIEKNSNAIAVRYAPELGSMW------A 289
Query: 486 DRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKN 545
D K++Q L NLLSNA KFT G IS+ + I NP S Q++ C
Sbjct: 290 DLTKVRQNLFNLLSNAAKFTENGTISLEV-----TRIPNPQPQDSA----QAVLCAVLSQ 340
Query: 546 KKARGDLE-AVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGT 600
G L+ + A+ D F++ DTG G+ E+ +FE + Q GGT
Sbjct: 341 PPESGYLKPGASHAESD----WICFKIKDTGIGMTPEQINRLFEAFTQADASTTRKYGGT 396
Query: 601 GLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GLGL I + +MGGDI + +E GE G+ F
Sbjct: 397 GLGLAISKRFCEMMGGDITVTSQE-GE-GSTF 426
>gi|374813787|ref|ZP_09717524.1| sensory box sensor histidine kinase/response regulator, partial
[Treponema primitia ZAS-1]
Length = 1003
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 132/268 (49%), Gaps = 50/268 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A +AER +M K++ AN SH+IR + I G+ EL + P E + R +
Sbjct: 295 VKAKLEAERAAMAKTVFLANTSHEIRTPMNAILGMTELILRKDIPQDVYE-DARSIKQAG 353
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+LL ++N ILD SK+E+GK+ L+E D+ + ++ DV+ + K + +D DG
Sbjct: 354 ANLLSIINDILDFSKIESGKLDLVEADYQLSSVINDVISIIRTRLNEKPILFTVD-IDGK 412
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ +++ GD V+ +Q+L NLL+NAVK+T EG I + +++ H
Sbjct: 413 LP--NRLIGDEVRFRQVLINLLTNAVKYTREGRIIL-------------TITGETH---- 453
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV--- 593
E+ + T V DTG GI +E +F + Q+
Sbjct: 454 -------------------------EDRIVLTISVADTGIGIKQEDMGKLFGEFQQLDTH 488
Query: 594 -KEGEGGTGLGLGIVQSLVRLMGGDIEI 620
+G GTGLGL I + L RLMGGDI +
Sbjct: 489 KNQGVEGTGLGLAISRKLCRLMGGDITV 516
Score = 47.4 bits (111), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ DD + VA+ L + G A++L++ YD +
Sbjct: 678 RLLIVDDIVTNLNVAKGLLSLYQTDITTATGGREAVELIKRN-------------RYDIV 724
Query: 1060 LMDCEMPIMNGYEATRKIR---EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
MD MP M+G EAT IR +E+ + ++PIIALTA+ + + G + +L K
Sbjct: 725 FMDHMMPEMDGIEATAAIRAWEDEQPEHTKNVPIIALTANAVTGMKEMFLSKGFNDYLSK 784
Query: 1117 PL 1118
P+
Sbjct: 785 PI 786
>gi|428217026|ref|YP_007101491.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427988808|gb|AFY69063.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 1584
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 147/289 (50%), Gaps = 35/289 (12%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + A+ ++ KS AN SH++R L I GL +L E G E + NL +N
Sbjct: 1120 QAKESADAANIAKSKFLANMSHELRTPLNAILGLTQLMSDEPMLGKEQKENLSIINNSGE 1179
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N +L+ SK+E+GK L + F++ LL +++ + A K +++ ++ +V
Sbjct: 1180 HLLSLINDVLEMSKIESGKAILNQSKFNLHNLLNNLISMLQWRAREKQLQLEFVCAE-NV 1238
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACV--KKPSAI----GNPSLSSSR 531
K+ ++ D VKL+Q+L NL NA+KFT G + + V + P+ I P++S
Sbjct: 1239 PKY--IEADPVKLRQVLINLTGNAIKFTQAGKVILSVWVEPEPPTEIIPTDNEPNISVDP 1296
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRD-ENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
EA N + +N ++ F+V DTG GI E K VF +
Sbjct: 1297 Q--------------------EAANRSNNQLDNQLDLWFKVIDTGVGIAPEDLKEVFNPF 1336
Query: 591 VQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+Q + G GTGLGL I + VRLMGGDI + ++GT F FNV
Sbjct: 1337 IQSESGLRSTEGTGLGLSISREFVRLMGGDITVT--STLDQGTTFSFNV 1383
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 14/119 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D+++ ++VA L+ +G + + NG A+ +R Q+D YD +
Sbjct: 1450 RILLVEDNLVNQKVAVRMLQKIGYSADIANNGLEAIAALR-----QKD--------YDLV 1496
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMD +MP M+G EAT I +E +Q I IIA+TA+ ++ D+ + +GM H+ KP+
Sbjct: 1497 LMDVQMPEMDGIEATIAILQEWPEDQQPI-IIAMTANAMSQDRDRCLASGMSDHIAKPI 1554
>gi|391231316|ref|ZP_10267522.1| signal transduction histidine kinase [Opitutaceae bacterium TAV1]
gi|391220977|gb|EIP99397.1| signal transduction histidine kinase [Opitutaceae bacterium TAV1]
Length = 851
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 128/279 (45%), Gaps = 56/279 (20%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET--NLRQMNVCAND 418
+ AE S KS AN SH++R + I G E+ +AG + +LR+++
Sbjct: 343 ELAEEASRTKSAFLANMSHELRTPMNAIIGYSEMLIEDAGDTGNDDAIPDLRKIHTAGKH 402
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHP-VAMRKGVEVVLDPSDGSV 477
LLGL+N +LD SK+EAGKM L ED DV L+ +V P V + VV P D
Sbjct: 403 LLGLINDVLDISKIEAGKMTLYLEDADVHALVSEVAATIRPLVEQNRNTLVVECPPD--- 459
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ D K++Q L NLL NA KFT G I++ +++ RH
Sbjct: 460 --LGSLHADITKVRQTLFNLLGNAAKFTHAGRITL-------------AVARKRH----- 499
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
+N FTF V DTG G+ +E+ +F+ +VQ
Sbjct: 500 ------------------------QNRDWFTFRVADTGIGMTREQLGKLFQAFVQADAST 535
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GGTGLGL I + +LMGGDI + E G+ GT F
Sbjct: 536 TRKYGGTGLGLAISRKFCQLMGGDIAVA-SEPGQ-GTAF 572
>gi|359443275|ref|ZP_09233118.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Pseudoalteromonas sp. BSi20429]
gi|358034853|dbj|GAA69367.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Pseudoalteromonas sp. BSi20429]
Length = 909
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 182/380 (47%), Gaps = 70/380 (18%)
Query: 260 NPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRT---SKR 316
N K++S SG G LS+ ++ ++F++A ++P K ++S T +
Sbjct: 284 NENKSLSEISGEG-LSVYAYDWRQ-LNKFDIA------PQSLPEKSIISYYEPTYFEQNK 335
Query: 317 ALILLIVMTVGVLISMLTFV-FKSARAAR------KEMHLCASLIKQ-----MEATQQAE 364
LI + +L S L FV F + R + +E S + Q ++A ++AE
Sbjct: 336 TLIYSATAIIFILSSFLVFVLFLNQRRIQLLKELDEEKQRLESRVDQRTEELLQAKEEAE 395
Query: 365 RKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLN 424
+ + KS AN SH+IR ++GI GL + + PG E E L ++ ++ LL ++N
Sbjct: 396 KLTSAKSEFLANMSHEIRTPMSGIIGLTNILLEKGLPG-EYEHYLNKIKYSSDQLLVVIN 454
Query: 425 SILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVK 484
ILD SK+E+G + L E F V +++ + F +A KG + D G +K +
Sbjct: 455 DILDFSKIESGNINLEEFPFSVNSVVDYIKATFDELAQSKG--ITFDIVIGKEVKLDLI- 511
Query: 485 GDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYK 544
GD V++ Q+L NL SNA+KFT++G +SV ++ ++ +P +S+ CL+
Sbjct: 512 GDVVRINQVLLNLCSNAIKFTTQGFVSV--LIESKRSLADP----------KSV-CLY-- 556
Query: 545 NKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGT 600
F V D+G GI ++ +FE++ Q GGT
Sbjct: 557 ------------------------FIVKDSGIGIAEQSLTDLFESFTQADSSTTRKFGGT 592
Query: 601 GLGLGIVQSLVRLMGGDIEI 620
GLGL I + L + MGGDI +
Sbjct: 593 GLGLTISKRLCQSMGGDITV 612
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 13/136 (9%)
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
++ L G KILV +D+ + R + L A + +NG +Q V+S
Sbjct: 781 SEASLAGIKILVVEDNSINRLIVTNILEKADAQIYLVDNGLECIQAVKSQ---------- 830
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
YD ILMD MPIM+G EA++ IR + + +IPIIALTA++ ++ + + GM+
Sbjct: 831 ---SYDIILMDIHMPIMDGVEASKIIRSDSDKAIANIPIIALTANVMKDDITRYLSIGMN 887
Query: 1112 VHLGKPLNRDHLMEAI 1127
H+ KP+ +L E I
Sbjct: 888 AHVAKPIKAQNLRETI 903
>gi|118790698|tpd|FAA00250.1| TPA: histidine kinase [Oryza sativa Japonica Group]
gi|222625684|gb|EEE59816.1| hypothetical protein OsJ_12359 [Oryza sativa Japonica Group]
Length = 1005
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 164/354 (46%), Gaps = 55/354 (15%)
Query: 319 ILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQ-AERKSMNKSLAFANA 377
+ +I M VG +I AA ++MEA ++ AE + KS A
Sbjct: 341 VFVICMLVGYII----------YAAWSRYDNVKEDCRKMEALKKRAEAADIAKSQFLATV 390
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGLLNSILDTSKVE 433
SH+IR + G+ G++++ +EL++ R VC L+ L+N +LD +K+E
Sbjct: 391 SHEIRTPMNGVLGMLDMLL-----DTELKSTQRDYAQTAQVCGKALISLINEVLDRAKIE 445
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV-KGDRVKLKQ 492
AGK+ L FD+ +L+DV+ LF + KG+E+ + S+ + ++ GD + +Q
Sbjct: 446 AGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSE----RVPEILLGDPGRFRQ 501
Query: 493 ILSNLLSNAVKFTSEGHISVRACV---------------------KKPSAIGNPSLSS-- 529
I++NL+ N++KFT GHI V+ + K AI P+ S
Sbjct: 502 IITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKIEPVVNGMNGHKDEAIAIPTSGSHN 561
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAA-QRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
+ GF + S ++N K E + D + + V+DTG GIP + VF
Sbjct: 562 TLSGFEAADSRNNWENFKLLLSYEKNEMPYESDSDKVTLVVSVEDTGIGIPLHAQGRVFT 621
Query: 589 NYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
++Q GGTG+GL I + LV +MGG I V + G+ F F L
Sbjct: 622 PFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRP--LVGSTFTFTAVL 673
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 30/151 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + RVA L+ GA VE E+G+ AL L L PH
Sbjct: 858 LLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSL----------LQVPH--K 905
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEE------------------KRNQVHIPIIALTAHI 1097
+D LMD +MP M+G+EATR+IR E K + H+PI+A+TA +
Sbjct: 906 FDLCLMDIQMPEMDGFEATRQIRAMEGKANEQADDSESGSEIAAKTAKWHLPILAMTADV 965
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
++ + GMD ++ KP L +A++
Sbjct: 966 IQATHEECTKCGMDGYVSKPFEEKQLFQAVQ 996
>gi|312962748|ref|ZP_07777237.1| two-component system, NarL family, sensor histidine kinase EvgS
[Pseudomonas fluorescens WH6]
gi|311283123|gb|EFQ61715.1| two-component system, NarL family, sensor histidine kinase EvgS
[Pseudomonas fluorescens WH6]
Length = 1206
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 139/286 (48%), Gaps = 49/286 (17%)
Query: 353 LIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
LI+Q+ +A + A+ + +KS+ A+ SH+IR ++ + GLIE+ V G +++ NLR
Sbjct: 700 LIEQLLQAKEAADDANESKSIFLASMSHEIRTPISALIGLIEMLRVRGGSPEQIDENLRV 759
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
++ A LL L+ ILD SK+EAG M D+ +LLE V LF A KG+ L
Sbjct: 760 AHLSAQSLLSLIGDILDLSKIEAGAMVPSPRPTDLAQLLESVHKLFEVNAQNKGLTFDLQ 819
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
+ L V D + L QI++NL+SNA+KFT +G + +
Sbjct: 820 IDAMASL----VLIDSLMLNQIIANLISNAIKFTQQGFVKL------------------- 856
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
S+ L ++ G + EV D+G G+ ++++K +FE +V
Sbjct: 857 -----SLKQLPDDHESGFG---------------RYLIEVQDSGLGLNEQQKKAIFEPFV 896
Query: 592 QVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
QV GE TGLGL I L L+G + I +G+CF+
Sbjct: 897 QVSPNTTGERSTGLGLSICTRLATLLGARLSI--NSTPGQGSCFQL 940
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 96/226 (42%), Gaps = 24/226 (10%)
Query: 915 GRH--EIQEEGSSSSEHSRRDIM-PNASVLLKTGNSSGEGPRRDIMPNASVLL----KTG 967
GR+ E+Q+ G +E ++ I P V T G I + LL
Sbjct: 870 GRYLIEVQDSGLGLNEQQKKAIFEPFVQVSPNTTGERSTGLGLSICTRLATLLGARLSIN 929
Query: 968 NSSGEGSS---RYKQTEIEEEDGERSQAQKPLRGK--KILVADDSMMLRRVAEINLRHLG 1022
++ G+GS +K + + A P ILV +D R + + +LG
Sbjct: 930 STPGQGSCFQLEFKAEQTRQAPTTTVAAALPQSSYHLNILVVEDHAPNRLLLCQQIEYLG 989
Query: 1023 ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK 1082
T C++GE AL + Q D P+D + DC MP+M+GYE R++R E+
Sbjct: 990 HTAVPCDDGETALAKWK-----QADP------PFDLTITDCNMPLMDGYELARQMRRIEQ 1038
Query: 1083 RNQVHI-PIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
V PI LTAH + D + AGM L KPL + L + I
Sbjct: 1039 SRAVRPHPIFGLTAHAQSQVVDDCLAAGMTQCLFKPLGIETLTQHI 1084
>gi|343085678|ref|YP_004774973.1| multi-sensor hybrid histidine kinase [Cyclobacterium marinum DSM
745]
gi|342354212|gb|AEL26742.1| multi-sensor hybrid histidine kinase [Cyclobacterium marinum DSM
745]
Length = 1332
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 145/292 (49%), Gaps = 55/292 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC--- 415
A + AE + KS AN SH+IR L G+ G +L P SE T L+ M
Sbjct: 683 AKESAENANKAKSDFLANMSHEIRTPLNGVIGFSDLLM--KTPLSE--TQLQYMKTVYHS 738
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
A+ LL L+N ILD SK+EAGKM+L + D+ EL V D+ + A KG+E++L+ S
Sbjct: 739 AHSLLDLINDILDFSKIEAGKMELSIDKVDIFELGTQVADIINYQAHSKGLELILNLS-P 797
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ +F V GD ++++Q+L NLL+NA+KFT +G + ++
Sbjct: 798 HLPRF--VYGDDIRIRQVLVNLLTNAIKFTHKGEVELK---------------------- 833
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+E ++ DE ++F F V DTG GI +K+ +F+ + Q
Sbjct: 834 ----------------VEILDNTPNDE-TIKFRFSVKDTGIGISFDKQLKIFDAFSQEDA 876
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
GGTGLGL I L+ LMG +E+ + N +G+ F F++ L E
Sbjct: 877 STTRKFGGTGLGLTISNKLLGLMGSKLELKSEPN--KGSLFYFDLCLKAEEG 926
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 18/134 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
IL+A+D+ + ++++I L + T+ ENG A + V + + DL
Sbjct: 1087 ILIAEDNPVNMKLSKIILSKISPTINIIEAENGLMAYEYV---IKNHPDL---------- 1133
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
ILMD +MPIMNGYE + IR E IPIIALTA E ++ I++GM+ ++ KPL
Sbjct: 1134 ILMDIQMPIMNGYETAKAIRTIEHGKS--IPIIALTAGTVKGEKERCIDSGMNDYMSKPL 1191
Query: 1119 NRDHLMEA-IKYLH 1131
+D L E IK+L
Sbjct: 1192 VQDKLTEKIIKFLQ 1205
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 80/170 (47%), Gaps = 24/170 (14%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSM----MLRRVAEI-NL 1018
L+ + +GS Y ++ E+GE+ + + K+LV DD+ +++ + E+ N+
Sbjct: 903 LELKSEPNKGSLFYFDLCLKAEEGEKEKWNENHGLSKVLVVDDNQTNRYLIKEILEVKNI 962
Query: 1019 RHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078
+ L A+ NG L ++ P D +LMD MP +NG E KIR
Sbjct: 963 QCLEAS-----NGLEGLHVLEKEW------------PVDLVLMDLRMPFLNGLETIEKIR 1005
Query: 1079 EEEKRNQVHIPIIALTAHISGE-EADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ + I+ L++ + E +K ++ + L KP+ ++H ++ +
Sbjct: 1006 SLPNQDIAKVSIVLLSSSNDNDLEKEKLVKLNVHHRLIKPI-KNHQIDKV 1054
>gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472]
gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
Length = 1480
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 158/377 (41%), Gaps = 90/377 (23%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ ++ K+ AN SH+IR + I G++ L + ++ + L ++ A
Sbjct: 882 VQAKEAAEKANLAKTAFVANMSHEIRTPMNAILGMVYLL-SQGRLSAQQQHQLDTIDRSA 940
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL L+N ILD SK + GK+QL DFD+ L DV+ L A KG+++ L G
Sbjct: 941 RHLLNLINDILDLSKADVGKLQLALSDFDLARLPADVMGLVADQAKAKGLQLSLQADAGP 1000
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V+GD +L Q L NLLSNAVKFT G I++ +
Sbjct: 1001 L----PVRGDATRLTQCLLNLLSNAVKFTERGRIAISLSIDG------------------ 1038
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
DE + FEV DTG GIP E + +F + Q
Sbjct: 1039 -----------------------EDEYGVLARFEVRDTGIGIPAEVQPRLFGAFEQADAS 1075
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GGTGLGL I + L LMGG + V+ G+ G+ F F +A +A D Q
Sbjct: 1076 TTRRYGGTGLGLAITKRLAELMGGAVG-VESAPGQ-GSLFWFTARVARSGQAAADQYPQ- 1132
Query: 653 EKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANE 712
+ + P +R +G V+L+ +
Sbjct: 1133 -------------------------------------QTGVAQPRTRWDGLRVLLVEDDA 1155
Query: 713 ERRRIAQKFMENLGINV 729
R +AQ ++++G+
Sbjct: 1156 INREVAQALLQDVGLEA 1172
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 13/131 (9%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G ++L+ +D + R VA+ L+ +G + ENG+ A++ V++ AP Y
Sbjct: 1145 GLRVLLVEDDAINREVAQALLQDVGLEADMAENGKIAVERVQA---------APA--RYA 1193
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
ILMD +MP M+G EATR+IR + +IPI+A+TA+ E+ EAGM+ + KP
Sbjct: 1194 LILMDVQMPEMDGLEATRRIRALDAGE--NIPIMAMTANAFAEDRSACREAGMNDFVAKP 1251
Query: 1118 LNRDHLMEAIK 1128
++ D L A++
Sbjct: 1252 VDPDQLFAALR 1262
>gi|157373767|ref|YP_001472367.1| histidine kinase [Shewanella sediminis HAW-EB3]
gi|157316141|gb|ABV35239.1| Histidine kinase [Shewanella sediminis HAW-EB3]
Length = 1200
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 144/296 (48%), Gaps = 53/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
+ +EA Q AE ++ KS AN SH+IR + I G+++L + E L +
Sbjct: 675 VAMLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTPQQEDYLDKAG 733
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DP 472
A LL ++N ILD SK+EAGK++L F + ++L+ +DL A +KGVE++L P
Sbjct: 734 FSAQSLLRIINDILDFSKIEAGKLELERVGFPLDKVLDHALDLNALKAQQKGVELLLYAP 793
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
++ ++GD ++L Q+L N+LSNAVKFT G I
Sbjct: 794 VTAGLI----LEGDPLRLGQVLINMLSNAVKFTQSGEI---------------------- 827
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+L + +RD + + F V DTG GI KE++ ++F+ + Q
Sbjct: 828 ------------------ELGCEDVGERD-HRITLKFWVRDTGIGISKEQQASLFDAFAQ 868
Query: 593 ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + LV +MGG ++ V E G G+ F F + I E +
Sbjct: 869 ADGSTTRKYGGTGLGLSISKHLVSMMGGKMQ-VQSEMG-VGSTFSFTISFEIAEEA 922
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 75/130 (57%), Gaps = 15/130 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ +D+ + ++VA L+ G V+ ENG+ A+ ++ +D +
Sbjct: 1080 RVLLVEDNFINQQVATELLKSAGYEVDVAENGQIAIDMIEEK-------------EFDAV 1126
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP+M+G AT+++R+ + + +PIIA+TAH + +K++ AGM+ H+ KP+
Sbjct: 1127 LMDIQMPVMDGLTATKELRK--RYSSTELPIIAMTAHAMSGDREKSLSAGMNAHITKPIV 1184
Query: 1120 RDHLMEAIKY 1129
+ L + + +
Sbjct: 1185 LNELFDTLSH 1194
>gi|359485817|ref|XP_002269977.2| PREDICTED: histidine kinase 2-like [Vitis vinifera]
Length = 1272
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 172/356 (48%), Gaps = 39/356 (10%)
Query: 322 IVMTVGVLISMLTF--VFKSA--RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANA 377
I +VGVL+ L +F +A R A+ E + ME +AE + KS A
Sbjct: 621 ITASVGVLVITLLVGHIFHAAINRIAKVE----GDYRQMMELKVRAEAADVAKSQFLATV 676
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKM 437
SH+IR + G+ G++++ +++G + + + DL+ L+N +LD +K+E+G++
Sbjct: 677 SHEIRTPMNGVLGMLKM-LMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRL 735
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
+L FD+ L++V+ LF + KG+E+ + SD V +F V GD + +QI++NL
Sbjct: 736 ELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISD-QVPEF--VIGDPGRFRQIITNL 792
Query: 498 LSNAVKFTSE-GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVN 556
+ N++KFT + GHI V + +G P L QS++ + + + L
Sbjct: 793 VGNSIKFTHDKGHIFVSVHLAD-EVVGPPDLRDEV--LRQSLNIVHDSSNNSYNTLSGFP 849
Query: 557 AAQR-----------------DENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE-- 597
R + + ++ V+DTG GIP E + +F ++Q
Sbjct: 850 VVNRWKSWEKFKKLSCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSR 909
Query: 598 --GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
GGTG+GL I + LV LMGG+I + E G G+ F F V E S D Q
Sbjct: 910 TYGGTGIGLSISKRLVDLMGGEIGF-ESEPGT-GSTFSFTVAFTKGETSLLDTKQQ 963
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 38/170 (22%)
Query: 987 GERSQAQ--KPL------RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV 1038
G+R QA KPL R K+ILV DD+ + RRVAE L+ GA V ++G+AAL ++
Sbjct: 1111 GKRKQANRGKPLTLGNLLREKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLML 1170
Query: 1039 RSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQ------------ 1085
+ PH +D MD +MP M+G+ AT++IR E K N+
Sbjct: 1171 K----------PPH--NFDACFMDLQMPEMDGFRATQEIRRMESKVNERIKSGEVSIEMF 1218
Query: 1086 -----VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
H PI+A+TA + ++ ++ GMD ++ KP D L A+ +
Sbjct: 1219 ANVAYWHTPILAMTADVIQANNEECMKCGMDGYVAKPFEEDQLYSAVAHF 1268
>gi|153869707|ref|ZP_01999246.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp.
PS]
gi|152073825|gb|EDN70752.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp.
PS]
Length = 1183
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 161/308 (52%), Gaps = 35/308 (11%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAG--ITGLIELCYVEAGPGSELETNL-RQMNVCAN 417
++ E+ + KS AN SH++R L I G I L +AG ++ + + ++
Sbjct: 445 KELEQANQYKSEFLANMSHELRTPLNSLLILGQI-LADNKAGNLTDKQVEYAKTIHSAGM 503
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
DLL L+N ILD SKVEAGKM+L E + ELL+ + F VA K + + +D
Sbjct: 504 DLLSLINDILDLSKVEAGKMELRFEAVLLTELLDTLKHKFRHVAEEKSLTFHITLADELP 563
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L D +L+QIL+NLLSNA KFTSEG +++ ++ SLSS RHG S
Sbjct: 564 LTLYT---DTQRLQQILNNLLSNAFKFTSEGEVTLEVNYLVEKSL--QSLSSIRHGLTSS 618
Query: 538 I---SCLFYKNKKARGDLEAVNAAQR--------DENAMEFT----FEVDDTGKGIPKEK 582
Y R + + A ++ +EN +E T F V DTG GIP+EK
Sbjct: 619 PIGREVPLYAPTSEREEAVSGRAPEKIQTEYPGIEENFLEPTKIIAFRVTDTGIGIPEEK 678
Query: 583 RKTVFENYVQVKEGE-----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
+K +F+ + Q +G GGTGLGL I + L +L+GG++++ +EN +G+ F +
Sbjct: 679 QKAIFDAFQQA-DGTTSRRFGGTGLGLSISRQLAQLLGGELQLESQEN--QGSTF---IL 732
Query: 638 LAIREASA 645
L +ASA
Sbjct: 733 LLPEKASA 740
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEAC--ENGEAALQLVRSGLNDQRDLGAPHI 1053
LR KK+L+ DD + L G +E ENG+ AL + L++ D+
Sbjct: 1058 LRNKKVLIVDDDIRNTFALMTYLEGEGMEMEIFIGENGKEALTM----LDEHPDI----- 1108
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
D +LMD MP M+GYEA R IR++ + + +PIIALTA + K IEAG + +
Sbjct: 1109 ---DIVLMDIMMPEMDGYEAIRAIRKQTRFQK--LPIIALTAKAMKGDKTKCIEAGANDY 1163
Query: 1114 LGKPLNRDHLMEAIK 1128
L KP++ + L+ ++
Sbjct: 1164 LSKPVDTEKLISLMR 1178
>gi|13359155|dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thaliana]
Length = 1057
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/361 (28%), Positives = 168/361 (46%), Gaps = 43/361 (11%)
Query: 309 LVHRTSKRALILLIVMTVGVLISMLTFV--FKSARAARKEMHLCASLIKQMEATQQAERK 366
++ R ++A I L V+T L + F+ + AA + + + E +AE
Sbjct: 387 MICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAA 446
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGL 422
+ KS A SH+IR + GI G++ + +EL + R VC L+ L
Sbjct: 447 DVAKSQFLATVSHEIRTPMNGILGMLAMLL-----DTELSSTQRDYAQTAQVCGKALIAL 501
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N +LD +K+EAGK++L FD+ +L+DV+ LF + KG+E+ + SD
Sbjct: 502 INEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVP---EI 558
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS------------AIGNPSLSSS 530
VKGD + +QI+ NL+ N+VKFT +GHI V+ + + S + + S
Sbjct: 559 VKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVS 618
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAM-EFTF--------EVDDTGKGIPKE 581
+ ++S Y+ R ++ +E ++ EF ++DTG GIP
Sbjct: 619 KQSSYNTLSG--YEAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLV 676
Query: 582 KRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
+ VF ++Q GGTG+GL I + LV LM G I + + + G+ F F
Sbjct: 677 AQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPH--IGSTFWFTAV 734
Query: 638 L 638
L
Sbjct: 735 L 735
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 24/179 (13%)
Query: 961 SVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKP------LRGKKILVADDSMMLRRVA 1014
+V++K +S G+ + E+ + + + P L GKKILV DD+++ RRVA
Sbjct: 878 TVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVNRRVA 937
Query: 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074
L+ GA V E+G+ AL L L PH +D MD +MP M+G+EAT
Sbjct: 938 AGALKKFGAEVVCAESGQVALGL----------LQIPHT--FDACFMDIQMPQMDGFEAT 985
Query: 1075 RKIREEEKRN------QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
R+IR EK + H+PI+A+TA + ++ +++GMD ++ KP ++L +++
Sbjct: 986 RQIRMMEKEAKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSV 1044
>gi|390443657|ref|ZP_10231445.1| multi-sensor hybrid histidine kinase [Nitritalea halalkaliphila
LW7]
gi|389666260|gb|EIM77714.1| multi-sensor hybrid histidine kinase [Nitritalea halalkaliphila
LW7]
Length = 1221
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 147/298 (49%), Gaps = 54/298 (18%)
Query: 343 ARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPG 402
++ L ASL+ A Q+AE+ + +KS AN SH+IR L G+ G +L V
Sbjct: 566 VQRRAELEASLV---HAKQEAEQANRSKSEFLANMSHEIRTPLNGVIGFTDLL-VNTELN 621
Query: 403 SELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAM 462
+E ++ N A+ LLG++N ILD SK+EAGK++L E + D+ L E+ D+
Sbjct: 622 AEQLQYVQSANSSAHSLLGIINDILDLSKIEAGKLELEEVETDIVYLAEETADIVKYNTA 681
Query: 463 RKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI 522
+K +E +L+ + + F V D ++LKQIL NLLSNA+KFTS+G + +
Sbjct: 682 KKNIEFLLNVA-VDMPNFLVV--DPIRLKQILVNLLSNAIKFTSKGEVEL---------- 728
Query: 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK 582
A++ + E FTF+V DTG GI + +
Sbjct: 729 -------------------------------AISYKELSEGMGAFTFKVRDTGIGISEAQ 757
Query: 583 RKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
R +F+++ Q GGTGLGL I Q L + MG +++ +E G+ F F +
Sbjct: 758 RDKLFKSFSQADTSTTRKFGGTGLGLVISQMLAKKMGTEVQFESEEG--VGSTFFFTL 813
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 16/132 (12%)
Query: 1000 KILVADD-SMMLRRVAEINLRHL-GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
+IL+A+D S+ + + + HL A + ENG A++L + P D
Sbjct: 978 RILIAEDVSLNMLLIKTLLKNHLPAAQIIEAENGRIAVELFEK------------VQP-D 1024
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
I MD +MP ++GYEATR+IR E + PIIALTA E ++ + AGM+ L K
Sbjct: 1025 LIFMDIQMPELDGYEATREIRSLEAEAGLPATPIIALTAGAIRGERERCLAAGMNEFLTK 1084
Query: 1117 PLNRDHLMEAIK 1128
P+++ L++ ++
Sbjct: 1085 PIDKKRLLQTLE 1096
Score = 43.5 bits (101), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K +L+ DD++ + + E L H ++ +NG AAL L+ ++ +D
Sbjct: 832 KNVLIVDDNLNNQLILEQMLAHWNIQSQSVDNGIAALTLLSKEVS------------FDV 879
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT-IEAGMDVHLGKP 1117
+++D MP M+G + ++I K +P I L + K+ I +DV L KP
Sbjct: 880 LIVDYHMPFMDGVKTIQEIHRLFKNQGRVLPKIILYSSADDHTVSKSAIGNIIDVKLIKP 939
Query: 1118 LNRDHLMEAIKYL 1130
L A+K L
Sbjct: 940 AKVSELFHALKTL 952
>gi|332526001|ref|ZP_08402141.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
JA2]
gi|332109846|gb|EGJ10474.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
JA2]
Length = 972
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 130/281 (46%), Gaps = 52/281 (18%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLG 421
QAE + KS AN SH+IR + I GL L + E LR+++ A LL
Sbjct: 458 QAEAATRAKSAFLANMSHEIRTPMNAIIGLTHLISRATQDPLQRE-RLRKVDGAAAHLLQ 516
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFS 481
+LN ILD SK+EAGK++L DF EL+ +D+ A KG+E+VLD +
Sbjct: 517 ILNDILDLSKIEAGKLRLDPVDFSRDELIARALDVVEASARAKGLELVLDTDHLP----A 572
Query: 482 KVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCL 541
+++GD L Q L NLL NAVKFT G + +RA + + HG
Sbjct: 573 RLRGDARLLSQALINLLGNAVKFTEHGWVRLRAALLR------------EHG-------- 612
Query: 542 FYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----E 597
QR ++ FEV DTG GI E++ +F + Q
Sbjct: 613 -----------------QR----LQVRFEVQDTGIGIAPEQQARLFTAFEQADSSSTRRH 651
Query: 598 GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL + + + LMGG + V + G+ F V+L
Sbjct: 652 GGTGLGLALTRHIAELMGGSADAVSRPGA--GSTFGLTVWL 690
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 15/122 (12%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G+++L+A+D+ + + VA L G V ++G A++L G+P P+D
Sbjct: 853 GRRVLLAEDNPVNQEVAVALLESAGLEVVVADDGARAVELA---------CGSP---PFD 900
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+LMD +MP M+G ATR IRE R +PI+A+TA+ GE+ + + AGMD H+ KP
Sbjct: 901 LVLMDVQMPGMDGLTATRTIRERAGRT---LPIVAMTANAFGEDREACLAAGMDDHVAKP 957
Query: 1118 LN 1119
++
Sbjct: 958 VD 959
Score = 43.9 bits (102), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 17/148 (11%)
Query: 988 ERSQAQKPLRGK-----KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGL 1042
ER+++ P G + LV DD R L LG + + E AL R
Sbjct: 691 ERAESVPPESGSLPPSLRALVVDDLPEAREAIASQLELLGVQADTADGAEQAL--ARLAA 748
Query: 1043 NDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEA 1102
QR YD ++DC MP+ +G+E R++R ++ +AH +
Sbjct: 749 AGQRR--------YDLFIVDCVMPVCDGFETLRRLRAAPGGAGPAAVLV--SAHDAPALR 798
Query: 1103 DKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
++ +AG L KPL L + I L
Sbjct: 799 ERARDAGYGAVLMKPLTPSALHDTIAQL 826
>gi|421131632|ref|ZP_15591812.1| 7TM diverse intracellular signaling [Leptospira kirschneri str.
2008720114]
gi|410357006|gb|EKP04291.1| 7TM diverse intracellular signaling [Leptospira kirschneri str.
2008720114]
Length = 804
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 143/284 (50%), Gaps = 51/284 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 406 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 464
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL P+A +K ++ L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRL---EGK 521
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFT+ G + ++ K S
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 565
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+D ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 566 -----------------------KDGVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 600
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GG+GLGL I + L+ L GG +++ + + GE G+ F F +
Sbjct: 601 TARKFGGSGLGLSITKQLIELQGGVLKL-ESQEGE-GSKFTFTI 642
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++ R L
Sbjct: 662 KDLEKSFQDVVSKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE--RMQLE- 718
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 719 ----------TFDIILMDIHMPEVDGIEATKWIRSKNQNSKFPI-IIALTADAIESSREK 767
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 768 YISKGMNDCLTKPLD 782
>gi|440232360|ref|YP_007346153.1| signal transduction histidine kinase [Serratia marcescens FGI94]
gi|440054065|gb|AGB83968.1| signal transduction histidine kinase [Serratia marcescens FGI94]
Length = 1178
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 144/292 (49%), Gaps = 54/292 (18%)
Query: 353 LIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
LI+Q+ +A + A+R + K+ A SH+IR L I G++EL + PG EL ++
Sbjct: 676 LIEQLRQAKEHADRANRAKTTFLATMSHEIRTPLNAIIGMLELL-LNRQPGDEL-ADIEL 733
Query: 412 MNVC---ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
+ V A+ LL L+ ILD S++EA ++ L + D+ L+E + LF +A +KG++
Sbjct: 734 LGVAHESAHSLLTLIGDILDISRIEADRLVLHPQRTDIRRLIESMAMLFDGLARQKGLDF 793
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
L+ D + V D V+ KQ+LSNL+SNA+KFTS+G I++ A V+K +
Sbjct: 794 RLE-IDAEIT--GDVLVDPVRFKQVLSNLVSNAIKFTSQGQITLSAVVEKVT-------- 842
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
+ + +V DTGKGI + +F+
Sbjct: 843 ---------------------------------KEHFDLRLQVSDTGKGIDARTLRRLFQ 869
Query: 589 NYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
+ Q + GG GLGL I + LV +MGG I + N E G F V L++
Sbjct: 870 PFTQGQNDVGGAGLGLFICRKLVAMMGGFISV----NSEVGLGSEFTVALSV 917
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
KP R ++LVA+D R + L +LG A E+G AL L+ H
Sbjct: 935 KPARCLRVLVAEDHHAGRMLLSRQLTYLGHIPTAAEDGAQALALLEQA----------H- 983
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIR-EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
+D ++ DC+MP M+GY +R+IR E +R+ I LTA+ + + AGMD
Sbjct: 984 --FDLVITDCQMPNMDGYSLSRRIRLNERERHLASSTIWGLTANAQESAREACLRAGMDD 1041
Query: 1113 HLGKPLNRDHLMEAIKYL 1130
L KP+N L + +++L
Sbjct: 1042 CLFKPVNLAMLRKKLQHL 1059
>gi|428319138|ref|YP_007117020.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428242818|gb|AFZ08604.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1831
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 134/272 (49%), Gaps = 27/272 (9%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
A Q AE + KS A SH+IR A+ G+TGL L +E P E + +
Sbjct: 1031 ARQAAEVANRAKSEFLATMSHEIRTPMNAVIGMTGL--LLDMELTP--EQRDFVETIRTS 1086
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
+ LL ++N ILD SK+E+GK+ L F++ +E+ ++L P A KG+E+ D
Sbjct: 1087 GDALLTIINDILDFSKIESGKLDLERSPFELQNCIEESLELLAPRASEKGLELAYFIDD- 1145
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
SV K + GD +L+QIL NLL NAVKFT G I V +K I S S + L
Sbjct: 1146 SVPK--NILGDVTRLRQILVNLLGNAVKFTESGEIVVCCTARKIEQIAANS-SPEKINIL 1202
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+ L + + AR E F V DTG GIP ++ +F+ + QV
Sbjct: 1203 EPQPLLINQGELAR------------RRQYEIQFAVQDTGIGIPPDRMDRLFKAFSQVDA 1250
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDK 623
GGTGLGL I Q L +MGG + +V +
Sbjct: 1251 STTRHYGGTGLGLAISQRLSDMMGGTMWVVSQ 1282
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 14/128 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D+++ ++VA L +G + NG L+ ++ YD +
Sbjct: 1545 RILLAEDNVVNQKVATHLLDRIGYRADIAANGLEVLEALKRQ-------------SYDVV 1591
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP M+G EATR+I +E N+ IIA+TA+ + +K + AGMD ++ KP+
Sbjct: 1592 LMDVQMPNMDGLEATRRICQEWPANK-KPRIIAMTANAMQGDREKCLAAGMDDYITKPVR 1650
Query: 1120 RDHLMEAI 1127
R+ L A+
Sbjct: 1651 REELAIAL 1658
>gi|304312878|ref|YP_003812476.1| hypothetical protein HDN1F_32580 [gamma proteobacterium HdN1]
gi|301798611|emb|CBL46841.1| Hypothetical protein HDN1F_32580 [gamma proteobacterium HdN1]
Length = 874
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 145/290 (50%), Gaps = 54/290 (18%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELC-YVEAGPGSELETNLRQMNVCANDL 419
+QAE ++ + LA SH+IR + GI GL+EL P E + +N + L
Sbjct: 433 EQAESRAKTEFLA--KVSHEIRTPMNGILGLVELLGMTRLSP--EQSRYVSAINSAGHTL 488
Query: 420 LGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLK 479
+ ++N ILD SK+ GKM L E++FD+ ELLED +F A +K +++ + G L
Sbjct: 489 VEVVNDILDYSKLVIGKMTLNEQEFDLRELLEDCAVIFEMPARKKALDLRIMIRAGVPL- 547
Query: 480 FSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSIS 539
++ GD ++L+Q++ NLLSNA+K+T GHI VR
Sbjct: 548 --RIHGDAMRLRQVVLNLLSNAIKYTEYGHIFVR-------------------------- 579
Query: 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKE 595
L + Q D+ + F V+D+G GI + + +F+++ Q + E
Sbjct: 580 ------------LSLTDEIQDDKVVLRFA--VEDSGCGIDRADQSRLFQSFSQIHNDITE 625
Query: 596 GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
E GTGLGL I Q ++ LMGG I VD G RG+ F F + + + E +A
Sbjct: 626 RETGTGLGLVISQQIIGLMGGTIG-VDSTLG-RGSVFWFTLPVKLEEDTA 673
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 13/144 (9%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
GE S L+ ++L+A+D+++ ++V L LG + +NG A++
Sbjct: 736 GEESSLDLDLQ-TRVLLAEDNLINQKVVIGFLERLGIRPDVVDNGRLAVER--------- 785
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTAHISGEEADKT 1105
A +PYD I +DC+MP+M+GYEA R+IRE E+ N +V PIIAL+AH S ++
Sbjct: 786 --AAQAAIPYDLIFLDCQMPVMDGYEAARRIREWERENGRVPTPIIALSAHHSDFHIAQS 843
Query: 1106 IEAGMDVHLGKPLNRDHLMEAIKY 1129
AGMD HL KP+N L +A+ +
Sbjct: 844 ERAGMDFHLSKPINFKTLSDAVTH 867
>gi|127511913|ref|YP_001093110.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
gi|126637208|gb|ABO22851.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
Length = 1171
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 144/304 (47%), Gaps = 54/304 (17%)
Query: 341 RAARKEMHLCASLIKQMEA-TQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEA 399
+AA+K + A L K++ TQ+ ++ S+ KS +N SH++R L GI G + L V
Sbjct: 481 QAAKKIQLVNAELEKKVAIRTQELQKASLVKSSFISNISHEMRTPLNGIVGTLNL--VRK 538
Query: 400 GPGSELETNLRQM-NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFH 458
+E + +M V N L L+N +LD SK+EAGK+ L F+ L+E V
Sbjct: 539 DSLTERQARYLEMAEVSVNTLSALINDVLDLSKIEAGKLDLDMSSFNPLNLIESVCSSMA 598
Query: 459 PVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK 518
A KG+E V+D D L+ V D ++ QIL+NL++NA+KFT G+I VRA
Sbjct: 599 VKAQEKGIEFVIDVVD---LRCQSVDSDPHRITQILTNLINNAIKFTDHGYIKVRA---- 651
Query: 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
H L R+ +EF EV DTG GI
Sbjct: 652 -------------HSRL------------------------RETGELEFICEVSDTGIGI 674
Query: 579 PKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
+E + +F + Q + GGTGLGL I + L L+ G + + + +G+CF F
Sbjct: 675 AEENQAKLFTAFSQATSSIAAQYGGTGLGLSICKELSELLNGKMSF--ESHKGQGSCFIF 732
Query: 635 NVFL 638
+ L
Sbjct: 733 TMVL 736
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 76/147 (51%), Gaps = 15/147 (10%)
Query: 982 IEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSG 1041
I EE+ R ++G ++LV DD+ + VA L L NG+ AL +R
Sbjct: 886 ISEEEAHR------IKGARVLVVDDNEINIEVALGILSELPLEFVRAINGQEALTKLREC 939
Query: 1042 LNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGE 1100
+Q LG ILMDC+MPI+NGY+ TR IR E V PIIA+TA
Sbjct: 940 --EQEGLGV------HCILMDCQMPILNGYDCTRAIRAGEAGEAFVDTPIIAMTASAMMG 991
Query: 1101 EADKTIEAGMDVHLGKPLNRDHLMEAI 1127
E DK IEAGM+ ++ KP+ + L E +
Sbjct: 992 ERDKCIEAGMNDYITKPIVAERLQEKV 1018
>gi|443479016|ref|ZP_21068685.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena
biceps PCC 7429]
gi|443015590|gb|ELS30477.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena
biceps PCC 7429]
Length = 824
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 140/283 (49%), Gaps = 50/283 (17%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH++R+ L + G +L E N+ +N + LL L+N+ILD
Sbjct: 359 KSTFIANMSHELRSPLNAVIGFSQLMMRTNDLPREHYENVSIINRSGDYLLTLINNILDL 418
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAGK L ++ D+ LLED+ D+ A G+E++ D V +F ++ D VK
Sbjct: 419 SKIEAGKTTLNRQNCDLYYLLEDLEDMLQLRATNAGIELIF-VKDDRVPRFIRI--DEVK 475
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+Q+L NLL NA+KFT G++ +
Sbjct: 476 LRQVLINLLGNAIKFTKMGNVKLL------------------------------------ 499
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV---KEGEGGTGLGLGI 606
+ ++ A++D F V DTG GI E+ +F ++ Q KE + GTGLGL I
Sbjct: 500 --VSTIDVAEQD---CTLNFSVRDTGVGIAPEELSDLFVSFSQAQAGKEKQEGTGLGLSI 554
Query: 607 VQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI-REASANDN 648
Q V+LMGG+I V E G +GT F+F + + + +EA A+ N
Sbjct: 555 SQRFVQLMGGEIT-VASELG-KGTTFQFQIPVQLGKEAIADTN 595
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KILV DD + ++ L+ +G V+ NG+ A+ + D PH+ I
Sbjct: 611 KILVVDDKPINCQLLIKLLQPMGFEVQEASNGQEAIAI--------WDRWEPHL-----I 657
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MPIM+GYEAT+ I+ K N +IALTA + EE + AG D + KP +
Sbjct: 658 WMDMRMPIMDGYEATKHIKSTIKGNAT--AVIALTASVLEEEKAILLSAGCDDFIRKPFS 715
Query: 1120 RDHLMEAI 1127
+ + +
Sbjct: 716 EQMIFDTL 723
>gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
T7901]
gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
T7901]
Length = 781
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 146/300 (48%), Gaps = 58/300 (19%)
Query: 342 AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
AA++E +I++++A QA KS A SH+IR + G+ G+IE+ + P
Sbjct: 245 AAKEEKIETRRMIERVKAANQA------KSQFIATMSHEIRTPMNGVIGMIEM--LRDTP 296
Query: 402 GSELETN-LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
++ + + L + LL ++N ILD SK+EAGKM L DFD+ ELL D V LF
Sbjct: 297 LNDSQKHYLDVIFRSGESLLEIINDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSAT 356
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
++ +E V S + ++++GD +L+QI+ NL+ NA KFTS GH+ V
Sbjct: 357 THKRDIEFVCAISPETP---TQLRGDPTRLRQIVVNLIGNAFKFTSNGHVMV-------- 405
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
+ + +S H L+ F + D+G GI K
Sbjct: 406 LVKSLQDRTSEHPLLR--------------------------------FSIVDSGIGISK 433
Query: 581 EKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
E ++ +F+ + Q GGTGLGL I + L LMGG I V+ E G +G+ F F +
Sbjct: 434 EIQRNLFQAFNQADTSTTRRYGGTGLGLAICKQLAELMGGTIG-VESEYG-KGSTFWFTI 491
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 15/192 (7%)
Query: 940 VLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTE---IEEEDGERSQAQKPL 996
+L+ T + + +MP S+L + + G ++ Q+ + E S+A P
Sbjct: 593 ILMLTHERTTKFTMEQLMPITSILPRPLTAHGLRTALLAQSTGVALNELISMESKAIAPA 652
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+ +LVA+D+ + R V E L E+G+ A+ + +P +
Sbjct: 653 QKLNVLVAEDNAVNRMVIEGLLNKHEIEPVFAEDGQEAVTAFETA--------SPR---F 701
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D I MDCEMP M+G+EAT KIRE EK R +PIIALTAH+ E + GM+ +L
Sbjct: 702 DLIFMDCEMPNMDGFEATEKIREYEKNRALTPMPIIALTAHVEAEHRQRVFNVGMNYYLT 761
Query: 1116 KPLNRDHLMEAI 1127
KP+ D L EA+
Sbjct: 762 KPVTMDKLREAL 773
>gi|427719935|ref|YP_007067929.1| Cache sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
gi|427352371|gb|AFY35095.1| Cache sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
Length = 930
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 161/328 (49%), Gaps = 34/328 (10%)
Query: 334 TFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIE 393
+F+ R A + L A A + A+ + KS AN SH++R L GI G +
Sbjct: 418 SFLELETRVAERTFELTA-------AKETADSANKAKSEFLANMSHELRTPLNGILGYAQ 470
Query: 394 LCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDV 453
+ + + + + + CA+ LL L+N ILD SK+EA K++L +DF L+ +
Sbjct: 471 ILQRDQTTNPKQKDGINIIYDCASHLLNLINDILDLSKIEARKLELAPKDFHFPTFLKSI 530
Query: 454 VDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVR 513
VD+ A +K E+ + + L + + D +L+Q+L NLL NA+KFT +G + +
Sbjct: 531 VDICRIRAEQK--EITFTYQELNQLP-TALLADEKRLRQVLINLLGNAIKFTDQGGVIFQ 587
Query: 514 ACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDD 573
V I +PS+S+ NK D + ++ + F+++D
Sbjct: 588 IGV----LIDSPSISNLSSNI----------NKANIDDFQKAKSS-----TAKIRFQIED 628
Query: 574 TGKGIPKEKRKTVFENYVQV---KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGT 630
TG G+ + + +F + QV + E GTGLGL I Q +V +MGGDIE V+ G+ G+
Sbjct: 629 TGIGMSSSQLQKIFLPFEQVGDKQRMEEGTGLGLAISQQIVEMMGGDIE-VESVCGQ-GS 686
Query: 631 CFRFNVFLAIREASANDNNTQGEKELAG 658
F F++ L I E + N+ + + G
Sbjct: 687 KFWFDLDLQISEQWIDLNSRKSTHNIIG 714
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
KKILV DD R V L+ LG + NG+ L Q + PH+
Sbjct: 720 KKILVVDDRWENRSVIVNMLQPLGFDLIEAINGQEGL--------GQAIVWHPHL----- 766
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
I+ D MP++NG E T+++R + + I IIA +A + + +E+G + L KP+
Sbjct: 767 IITDITMPVINGLEMTKQLRLIPQLQE--IIIIASSASVFIYNQQQGLESGCNDFLPKPV 824
Query: 1119 NRDHLMEAI-KYL 1130
D L+ I +YL
Sbjct: 825 QSDELLAQIQRYL 837
>gi|134100028|ref|YP_001105689.1| sensor histidine kinase/response regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133912651|emb|CAM02764.1| sensor histidine kinase/response regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 1326
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 137/297 (46%), Gaps = 62/297 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV--- 414
E + + S KS AN SH++R L L +L +E NL V
Sbjct: 867 ERAHELSQASTYKSDFLANMSHELRTPLNSALILAKLL------ADNMEGNLTPQQVDLA 920
Query: 415 -----CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE-- 467
DLL L+N +LD SKVEAG M L+ ED ++ EL E V L+ P+ KG+E
Sbjct: 921 KTIHSAGTDLLQLINDVLDLSKVEAGHMSLLPEDVELSELTEHVESLYRPLTEDKGLEFS 980
Query: 468 VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
VVL PS L+ DR +L+QIL N+LSNAVKFT +G + +R + + P+L
Sbjct: 981 VVLSPSLPPSLRT-----DRNRLEQILRNMLSNAVKFTDKGKVELRIRPAPATEVTVPAL 1035
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
S AA+R F V DTG GIP +K +F
Sbjct: 1036 RS---------------------------AARR------VAFAVRDTGIGIPSDKLSRIF 1062
Query: 588 ENYVQV----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
E + Q+ GGTGLGL I + L L+GG++++ + G F ++L +
Sbjct: 1063 EAFQQLDGTTSRKYGGTGLGLSISRELTTLLGGELQV----RSDVGVGSTFTLYLPV 1115
>gi|410938354|ref|ZP_11370207.1| 7TM diverse intracellular signaling [Leptospira noguchii str.
2006001870]
gi|410786583|gb|EKR75521.1| 7TM diverse intracellular signaling [Leptospira noguchii str.
2006001870]
Length = 804
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 143/284 (50%), Gaps = 51/284 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 406 IQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNEEQKEYVGVLSVSA 464
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL P+A +K + L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKIILEREVFSIRSVLDEIHDLLFPLAKQKEINFRL---EGK 521
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFT+ G + ++ K S
Sbjct: 522 LEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 565
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+D ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 566 -----------------------KDNVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 600
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GG+GLGL I + LV L GG +++ + ++GE G+ F F +
Sbjct: 601 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTI 642
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++ ++ G
Sbjct: 662 KDLEKSFQDVVSKTTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLG--- 718
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR + + ++ I IIALTA + +K
Sbjct: 719 ----------NFDIILMDIHMPEVDGIEATKWIRSKNQNSESPI-IIALTADVIESNKEK 767
Query: 1105 TIEAGMDVHLGKPLN 1119
+ GM+ L KPL+
Sbjct: 768 YVSKGMNDCLTKPLD 782
>gi|302786022|ref|XP_002974782.1| hypothetical protein SELMODRAFT_451443 [Selaginella moellendorffii]
gi|300157677|gb|EFJ24302.1| hypothetical protein SELMODRAFT_451443 [Selaginella moellendorffii]
Length = 823
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 144/293 (49%), Gaps = 29/293 (9%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +AE + +S A SH+IR L G+ G+ + ++ P + E L +
Sbjct: 258 EARDKAESAAKARSEFLAVMSHEIRTPLNGVIGMASV-LLDTDPTPDQEECLETIRTSGE 316
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK++AGK+ + ++ L+EDV + KGVE+V+
Sbjct: 317 CLLSIINDILDFSKIDAGKLTIAPVPCNLRSLVEDVGSMLALRVEPKGVELVVHYDS--- 373
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
F V D ++L+Q+L NL+ N+ KFT GHI V + L S L++
Sbjct: 374 -PFFAVSVDTIRLRQVLINLIGNSCKFTHAGHILVNVSL----------LCKSCQKQLKA 422
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAME------FTFEVDDTGKGIPKEKRKTVFENYV 591
F++ + D+ + + D +A F F + D+G GI ++K +FE +
Sbjct: 423 TD--FWECRSCSKDVNSFKGRELDSDAKHVKPVEYFKFSISDSGIGIAEDKLGLLFEKFS 480
Query: 592 QVKE----GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
Q + GGTGLGL + +SLV LMGG+I + +E G+ F F++ L I
Sbjct: 481 QCDQLTSNMYGGTGLGLAVSKSLVELMGGEIVVESREG--VGSTFSFSIPLEI 531
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 20/145 (13%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
G+++Q + R K+LV +D+ + + VA L +LG TV+ NG+ A+ +V +
Sbjct: 692 GDKAQTR---RHPKVLVVEDNKVNQMVAIRLLNNLGCTVDVACNGQEAVSIVDKPVE--- 745
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI 1106
YD I MDC MP+++G++A+R IR ++K PI+ALTA E +K +
Sbjct: 746 ---------YDLIFMDCHMPVLDGFQASRLIRSKQKLT----PIVALTAATMESELEKCL 792
Query: 1107 EAGMDVHLGKPLNRDHLMEAI-KYL 1130
E GMD ++ KP + L + K+L
Sbjct: 793 ECGMDDYVRKPCTKQELQRVLHKWL 817
>gi|242038337|ref|XP_002466563.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
gi|241920417|gb|EER93561.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
Length = 996
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 170/358 (47%), Gaps = 49/358 (13%)
Query: 319 ILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANAS 378
+ +I M VG ++ + + + ++M E +QAE + KS A S
Sbjct: 342 VFVICMLVGYIVFAAWSRYDNVKEDCRKME---------ELKKQAEAADVAKSQFLATVS 392
Query: 379 HDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQ 438
H+IR + G+ G++++ ++ S + VC L+ L+N +LD +K+EAGK+
Sbjct: 393 HEIRTPMNGVLGMLDM-LLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLD 451
Query: 439 LIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV-KGDRVKLKQILSNL 497
L FD+ +L+DV+ LF + KG+E+ + S+ + ++ GD + +QI++NL
Sbjct: 452 LESVPFDLRSILDDVIALFSSKSREKGIELAVYVSE----RVPEILLGDPGRFRQIITNL 507
Query: 498 LSNAVKFTSEGHISVRACVKKPSAIGNPS----LSSSRHGF------------LQSISCL 541
+ N++KFT GHI V+ + S + S +++ +G L ++S
Sbjct: 508 VGNSIKFTERGHIFVQVHLADHSNLATESEVEPVANGMNGHKDEKTAVATGVSLNTLSG- 566
Query: 542 FYKNKKARGDLEAVN---AAQRDENAME-------FTFEVDDTGKGIPKEKRKTVFENYV 591
++ +R E + +++E E V+DTG GIP + + VF ++
Sbjct: 567 -FEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFM 625
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
Q GGTG+GL I Q LV LMGG I V + + G+ F F L + SA
Sbjct: 626 QADSSTSRTYGGTGIGLSISQCLVELMGGQINFVSRP--QVGSTFTFTAVLQRCDRSA 681
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 39/193 (20%)
Query: 961 SVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRG----KKILVADDSMMLRRVAEI 1016
SV+ K +S + ++ I + ER L G K ILV DD+ + RVA
Sbjct: 809 SVITKPLKASALAACLFQTLGITQSSNERRDNSGSLHGLLLGKNILVVDDNKVNLRVAAG 868
Query: 1017 NLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY--ILMDCEMPIMNGYEAT 1074
L+ GA VE E+G+ AL L++ +PY + LMD +MP M+G+EAT
Sbjct: 869 TLKKFGAKVECVESGKDALALLQ--------------VPYKFHLCLMDIQMPEMDGFEAT 914
Query: 1075 RKIRE-EEKRNQ------------------VHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
++IR E K N+ H+P++A+TA + ++ + GMD ++
Sbjct: 915 QQIRTMEAKANEQAVACDDSETDGATRAAKWHLPVLAMTADVIQATHEECTKYGMDGYVT 974
Query: 1116 KPLNRDHLMEAIK 1128
KP L +A++
Sbjct: 975 KPFEEKQLFQALQ 987
>gi|254416315|ref|ZP_05030069.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196176997|gb|EDX72007.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1474
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 143/303 (47%), Gaps = 52/303 (17%)
Query: 339 SARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVE 398
S + A K +HL +A Q+AE + KS AN SH++R L GI G +++ E
Sbjct: 975 SQQLAEKNLHL-------EQARQEAETANHAKSEFLANMSHELRTPLNGILGYVQVLKRE 1027
Query: 399 AGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFH 458
P ++ + L + C LL LLN ILD SK+EA KM L +F LE ++++
Sbjct: 1028 PHPTAKQQQGLSIIQQCGEHLLTLLNDILDLSKIEARKMDLCLSEFQFPHFLEGIIEMVR 1087
Query: 459 PVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK 518
A K + P S L V+GD +L+Q+L NLL NA+KFT +G I+ +
Sbjct: 1088 IRADEKAIAFHYQPL--SPLP-KIVRGDEKRLRQVLINLLGNAIKFTDQGSITFKVGYTS 1144
Query: 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
A P+ +S N M F+++DTG GI
Sbjct: 1145 AQA---PATEAS--------------------------------NTMR--FQIEDTGIGI 1167
Query: 579 PKEKRKTVFENYVQVKEGE---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
E+ +F + Q+ + GTGLGL I Q LV+L+GG++ + + N +G+ F +
Sbjct: 1168 AAEQLNDIFLPFHQIGDRNRQVEGTGLGLAISQRLVQLLGGELHV--ESNVGQGSTFYVD 1225
Query: 636 VFL 638
+ L
Sbjct: 1226 LEL 1228
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 25/174 (14%)
Query: 964 LKTGNSSGEGSSRYKQTEI------EEEDGERSQAQKPLRG--KKILVADDSMMLRRVAE 1015
L ++ G+GS+ Y E+ + D + RG +KIL+ADD R +
Sbjct: 1210 LHVESNVGQGSTFYVDLELPAVSPDQAIDVVEDRIISGFRGYPRKILIADDQWQNRSILV 1269
Query: 1016 INLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075
L LG V NGE LQ Q P D ILMD MP ++G EATR
Sbjct: 1270 NLLLPLGFEVLEAINGEDCLQ--------QAQQEHP-----DAILMDLIMPKLDGLEATR 1316
Query: 1076 KIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+IRE R+ + ++A++A + GE+ +++ AG D +G+P+ L ++
Sbjct: 1317 RIREIPSLRDTI---VLAISASVFGEKQQQSLAAGCDDFIGQPIQAKTLFATLQ 1367
>gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
Length = 742
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 146/298 (48%), Gaps = 74/298 (24%)
Query: 346 EMHLCASLIKQMEATQQ------------AERKSMNKSLAFANASHDIRAALAGITGLIE 393
E+ L AS + +M +Q AE S +KS AN SH+IR L G+ G+++
Sbjct: 341 ELGLLASALDRMAQERQVAVDALRAAKDAAEDASRSKSEFLANMSHEIRTPLNGVLGMLQ 400
Query: 394 LCYVEAG-PGSE----LETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGE 448
L +E+G P +E +ET +R N L LL+ ILD S++E+ K+ + EE F V +
Sbjct: 401 L--LESGRPSAEQREYVETAIR----STNRLTRLLSDILDLSRIESNKLVIQEESFAVAD 454
Query: 449 LLEDVVDLFHPVAMRKGV--EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS 506
+ + ++D+F A KGV EV +DP + L GD +L+QIL NL+ NAVKFT
Sbjct: 455 VRQSILDIFETPAREKGVRLEVRVDPRIPAHL-----FGDEARLRQILFNLVGNAVKFTP 509
Query: 507 EGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME 566
+G ++V + V+AA E+ +
Sbjct: 510 KGQVAVNFVL--------------------------------------VSAA--GESTCQ 529
Query: 567 FTFEVDDTGKGIPKEKRKTVFENYVQVK----EGEGGTGLGLGIVQSLVRLMGGDIEI 620
F V D+G GIP E+ K +FE ++QV G GLGL IV+ LV LM G ++I
Sbjct: 530 IRFTVQDSGVGIPSERLKDIFEPFIQVDGSCVRSHQGAGLGLAIVRRLVDLMHGQLQI 587
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 988 ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
+RS ++ L ++ L+ +D + R E L G V + NG A+++++
Sbjct: 614 QRSGVERDLGERRFLLVEDDSVNRMAMERILGKFGCEVISAGNGLEAVEILKRE------ 667
Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE 1107
D + MD +MP+M+G EATR IREE + +PI+A+TA+ + ++ ++
Sbjct: 668 -------NVDLVFMDVQMPVMDGMEATRIIREELG---LDVPIVAMTAYAMAGDRERFLQ 717
Query: 1108 AGMDVHLGKPLNRDHLMEAI 1127
GMD ++ KP++ L E +
Sbjct: 718 GGMDSYVSKPVDMARLKETV 737
>gi|254429345|ref|ZP_05043052.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Alcanivorax sp. DG881]
gi|196195514|gb|EDX90473.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Alcanivorax sp. DG881]
Length = 771
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 142/287 (49%), Gaps = 61/287 (21%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS-ELETNLRQMNVCAN 417
A ++A + S KS AN SH+IR L GI G +L ++ P + E L ++ A
Sbjct: 274 ARKEALKASHIKSEFLANMSHEIRTPLNGILGFTKL--LDRSPMTPRQEDYLSTIHKSAE 331
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N +LD SK+EAGK+ L ++ +L+EDV L P+A +G+E +
Sbjct: 332 SLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLE-------QAA 384
Query: 478 LKFSKVK----GDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ +S V GD ++++Q+L+NL+SNA+KFT +G + VRA +++
Sbjct: 385 IIYSDVPVALLGDPLRIRQVLTNLVSNAIKFTDQGSVVVRAMLEED-------------- 430
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
RG EA+ V DTG G+ E +K +F + Q
Sbjct: 431 ---------------RG-AEAI-----------IKITVTDTGPGLNPEAQKDLFSAFTQA 463
Query: 594 KEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ EGGTGLGL I + LV MGG+I I +E RG+ F F +
Sbjct: 464 DQSARRQEGGTGLGLAISKRLVEGMGGEIGIDSREG--RGSTFWFTL 508
>gi|409993617|ref|ZP_11276752.1| sensory box histidine kinase/response regulator [Arthrospira
platensis str. Paraca]
gi|409935526|gb|EKN77055.1| sensory box histidine kinase/response regulator [Arthrospira
platensis str. Paraca]
Length = 1242
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 153/304 (50%), Gaps = 60/304 (19%)
Query: 353 LIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN---- 408
L+K EA + R KS AN SH+IR + G+ G+ L +EL+T
Sbjct: 568 LVKAREAALENSRL---KSQFLANMSHEIRTPMNGVLGMTGLLL-----KTELDTKQKDF 619
Query: 409 LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
++ + AN LL ++N ILD SK+EA +++L + DFD+ E LE+++DL A KG+E+
Sbjct: 620 VQAIRTSANHLLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIEL 679
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
D +V ++ ++GD +L+Q+L NL+SN +KFT G +++R V +P P+
Sbjct: 680 AA-IVDRNVPRY--LRGDPGRLRQVLLNLMSNGIKFTPAGEVTLR--VSRP-----PNYD 729
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
+NA + +EV DTG GIP E +FE
Sbjct: 730 --------------------------INA------PLILRYEVQDTGIGIPPESHGRLFE 757
Query: 589 NYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
+ QV GGTGLGL I + LV +MGG+I + + +G+ F F + +I + +
Sbjct: 758 AFSQVDASTTRKFGGTGLGLVICKQLVDVMGGEIGL--ESVVGQGSNFWFTLPFSISKTA 815
Query: 645 ANDN 648
+ N
Sbjct: 816 SFPN 819
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 14/124 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+L+A+D + ++V L LG + ENGE L+L L+D+ YD +
Sbjct: 983 KVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLEL----LSDRH---------YDLV 1029
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MDC+MP ++GY T+++R+ E ++ H +IALTAH + K + AGMD ++ KP+
Sbjct: 1030 FMDCQMPKLDGYATTKELRKREGTDR-HTTVIALTAHAMPSDRQKCLSAGMDDYISKPIT 1088
Query: 1120 RDHL 1123
++ L
Sbjct: 1089 QEEL 1092
>gi|333999085|ref|YP_004531697.1| sensor protein GacS [Treponema primitia ZAS-2]
gi|333740208|gb|AEF85698.1| sensor protein GacS [Treponema primitia ZAS-2]
Length = 1073
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 154/299 (51%), Gaps = 44/299 (14%)
Query: 353 LIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP--GSELETNLR 410
L++ A Q++ ++ +KS A SH+IR + I G+ EL E +E +R
Sbjct: 320 LLRITRAKIQSDEENKSKSSFLARMSHEIRTPMNAIIGISELALREDNSPRTTEYLGGIR 379
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
Q +LL ++N ILD SK+E+GK+ +I ++ L+ D + + M K V V+L
Sbjct: 380 Q---AGENLLSIINDILDFSKIESGKIDIINAEYMFASLINDCISIIRTRLMEKPV-VLL 435
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+G L + GD +++Q+L NLLSNAVK+T EG+I++ I N + +S+
Sbjct: 436 TKING--LLPASFIGDESRIRQVLLNLLSNAVKYTHEGYITL--------IITNSNTTSN 485
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
A G+L + A +E+ M +FE+ DTG GI +E +F ++
Sbjct: 486 ----------------TADGNL--IQTA--NEDTMLLSFEIADTGIGIKEEDMGKLFGDF 525
Query: 591 V----QVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
+ + +G GTGLGL I ++L RLMGGDI + K +GT F FL R A++
Sbjct: 526 IRFDQKANQGIEGTGLGLAIARNLCRLMGGDITV--KSTYGKGTA--FTAFLPQRTANS 580
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ DD VAE L V+ C +GE A++ V YD +
Sbjct: 720 RILLVDDVSTNLIVAEGLLTPYQTKVDCCGSGEEAIKFVGKQ-------------AYDIV 766
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP M+G EAT IR ++PIIALTA+ + + G + +L KP+
Sbjct: 767 FMDHMMPGMDGLEATAAIRALPLPYVQNMPIIALTANAVSGMKEMFLSKGFNDYLSKPIE 826
Query: 1120 RDHLME 1125
L E
Sbjct: 827 LTKLDE 832
>gi|443313166|ref|ZP_21042778.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
gi|442776571|gb|ELR86852.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
Length = 792
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 155/322 (48%), Gaps = 53/322 (16%)
Query: 318 LILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANA 377
++L+ +++VG+L + + ++ K + +R+++ + ++Q Q+A + KS AN
Sbjct: 290 IVLVGLVSVGLLSTGVYWLTKQLQISREQLENYSHKLEQ--KAQEALAANRAKSAFLANM 347
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKM 437
SH++R L+ I G +L + S NL ++ LL L+N +L SK+EAG +
Sbjct: 348 SHELRTPLSAILGFTQLMTRDRTLDSAQLENLAIISRSGEHLLTLINDVLSMSKIEAGSI 407
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
L E F++ LL+ + ++F A KG+E++ + S + + D KL Q+L NL
Sbjct: 408 ILDENSFNLNSLLDSLAEMFAIKAEAKGLELIFERSQDLP---NYLHADESKLSQVLINL 464
Query: 498 LSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNA 557
L NA+KFT G + +RA V I N L+
Sbjct: 465 LGNAIKFTETGRVILRASV-----INNEHLT----------------------------- 490
Query: 558 AQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG---GTGLGLGIVQSLVRLM 614
FEV+DTG GI + + +F+ +VQ + G+ GTGLGL I Q LM
Sbjct: 491 ---------LHFEVEDTGTGIESHELEKLFKPFVQTQAGQKSHQGTGLGLSISQQFACLM 541
Query: 615 GGDIEIVDKENGERGTCFRFNV 636
G+I + K +GT F F+V
Sbjct: 542 SGEIAL--KSTPSQGTVFYFDV 561
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV +D R++ L +G V A +NG+ + + + + PH+ I
Sbjct: 591 RILVVEDRDENRQLLVKLLTSIGFEVRAAQNGQVGINIWQ--------IWKPHL-----I 637
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+M+GY+ATR I+ + N IIALTA EE + AG D + KP
Sbjct: 638 WMDMRMPVMDGYQATRHIKSQ--LNGQSTIIIALTASAFDEERALVLSAGCDDFVCKPFL 695
Query: 1120 RDHLMEAI-KYL 1130
++E + KYL
Sbjct: 696 EAVILEKMAKYL 707
>gi|22298910|ref|NP_682157.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
gi|22295091|dbj|BAC08919.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
Length = 1060
Score = 120 bits (302), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 127/269 (47%), Gaps = 51/269 (18%)
Query: 371 SLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTS 430
S+ AN SH++R L I G ++ + + L ++N LLGL+N +LD +
Sbjct: 604 SIFLANMSHELRTPLNAILGFSQILLSDRTLAPQHRQTLEKINRSGEHLLGLINDVLDMA 663
Query: 431 KVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKL 490
K+EAG+M L + FD+ +L D+ ++ A KG+ +V D + + V D +KL
Sbjct: 664 KIEAGRMILQQTTFDLRRMLRDLEEMLKVRAEAKGLRLVFDLAANLPV---AVTTDEMKL 720
Query: 491 KQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARG 550
+Q+L NLL N +KFT EG + C+K
Sbjct: 721 RQVLVNLLGNGIKFTKEGSV----CLK--------------------------------- 743
Query: 551 DLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV---KEGEGGTGLGLGIV 607
+ R + FEV DTG G+ ++ K +F+ +VQ K+ GTGLGL I
Sbjct: 744 ------VSYRAQEPPRLAFEVSDTGIGMTPQELKMLFQPFVQTDSSKKVSEGTGLGLAIS 797
Query: 608 QSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ V+LMGGDI++ + +G+ F F V
Sbjct: 798 RQFVQLMGGDIQV--RSTKGKGSHFYFEV 824
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 28/179 (15%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDG---ERSQAQ------KPLRGKKILVADDSMMLRRVA 1014
++ ++ G+GS Y + I+ D E +AQ P +ILV DD R++
Sbjct: 808 IQVRSTKGKGSHFYFEVPIDLGDPRSLEEEKAQTIVGLRSPTSEVRILVVDDLPENRQLL 867
Query: 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074
L +G NG+ A+++ R+ PH ILMD MP+M+G AT
Sbjct: 868 TQLLEPVGFRCREASNGQEAVEIWRAW--------QPHA-----ILMDIRMPVMDGKTAT 914
Query: 1075 RKIREEE----KRNQVHIP--IIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
R+I++E +R + P I+A+TA ++ + + G D ++ KP L E +
Sbjct: 915 RQIKKEVGDRLQRGETICPPKILAVTASSFEQDKQELLGLGCDDYIAKPFRPQILFERL 973
>gi|124007456|ref|ZP_01692162.1| sensory transduction histidine kinase [Microscilla marina ATCC
23134]
gi|123987112|gb|EAY26861.1| sensory transduction histidine kinase [Microscilla marina ATCC
23134]
Length = 1248
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 153/310 (49%), Gaps = 50/310 (16%)
Query: 342 AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
A RKE A + + T +A++ S+ KS AN SH+IR L G+ G ++L ++
Sbjct: 716 AYRKEQERLALMKALQKTTLEAQQASVAKSEFLANMSHEIRTPLNGVVGFVDLL-LQTNL 774
Query: 402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
+ + L ++ N LL ++N ILD SK+EAGKM+L+ D+ ++ + + DL
Sbjct: 775 DATQKQYLDIVSQSGNTLLEIINDILDFSKIEAGKMELLPVKVDLAQMCDGLRDLMIYQT 834
Query: 462 MRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
+KG+E++L + G + +++ D ++LKQ+L+NLLSNAVKFTS+G I + + + +
Sbjct: 835 KQKGLEMILSLA-GDLPQYAWF--DEMRLKQVLTNLLSNAVKFTSKGTIEFKVTMLQKES 891
Query: 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
N+KA F V DTG GI E
Sbjct: 892 -----------------------NQKAL-----------------LRFLVKDTGVGILPE 911
Query: 582 KRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
++ +FE ++Q + GGTGLGL I L+ LM D + + +G+ F F+++
Sbjct: 912 NQQKIFEAFLQEDTSTTKRFGGTGLGLSISNRLLALM--DSRLCLESTHGKGSTFYFDIW 969
Query: 638 LAIREASAND 647
+ ND
Sbjct: 970 VNCVFEEHND 979
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 20/165 (12%)
Query: 958 PNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEIN 1017
P S L K + EG + T ++D S QK L +V D+ + + + EI
Sbjct: 1091 PQPSQLYKVLSKITEGLAETASTNEPKKDQAGSVLQKVL-----IVEDNEVNMLLMNEII 1145
Query: 1018 LRHL-GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076
+ L A + +GE AL + ++ L + ILMD +MP MNGYE TR+
Sbjct: 1146 AKLLPSAKILMAHSGEEALAIYQTALPET-------------ILMDVQMPGMNGYETTRQ 1192
Query: 1077 IRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
IR+ E+ Q I+A+TA EE IEAGMD + KP+N+
Sbjct: 1193 IRKIEQTLGQQRSKIVAVTAGALKEEKALCIEAGMDEFVTKPINK 1237
>gi|374996962|ref|YP_004972461.1| ATPase [Desulfosporosinus orientis DSM 765]
gi|357215328|gb|AET69946.1| putative ATPase [Desulfosporosinus orientis DSM 765]
Length = 1932
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 136/265 (51%), Gaps = 47/265 (17%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPG-SELETNLRQMNVCANDLL 420
Q E+ + K+ A SH++R L GI G+ L ++ G E +L+ + A LL
Sbjct: 1410 QLEQANQAKTEFLAKMSHEMRTPLHGIFGMASL--IQKGRLLPEQGEHLKSIIDSAQVLL 1467
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
++N ILD+SKVEA +++L E+ FD+ LLE+++ F A KG++V ++ + + F
Sbjct: 1468 EIINQILDSSKVEANRIELEEKTFDITFLLEELIPGFLVKAQEKGLQVKIESTPDT---F 1524
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
S ++GD +++KQIL+NLLSNA+KFT +G I VR V
Sbjct: 1525 SGLRGDPLRIKQILANLLSNAIKFTEKGLIQVRYSVIPQ--------------------- 1563
Query: 541 LFYKNKKARGDLEAVNAAQRDENA-MEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG--- 596
N A +E A ++D+G GIP++K +FE++ QV
Sbjct: 1564 ---------------NPATHEEGAPATLEMSIEDSGIGIPQDKLDYIFEDFTQVDSSISR 1608
Query: 597 -EGGTGLGLGIVQSLVRLMGGDIEI 620
GGTGLGL I + L+ LM G I +
Sbjct: 1609 KYGGTGLGLAITKKLLDLMKGSITV 1633
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+LVA+D + R+ + L +LG + NG L+ +++ YD +
Sbjct: 1680 KVLVAEDDAVSRKYVQALLHYLGCNAKMVLNGLEVLEELKAR-------------EYDCV 1726
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+MD MP ++G E TR+IR E H+PIIALTA + +K + AGMD + KP++
Sbjct: 1727 IMDKNMPELDGIETTRRIRRNEALTGKHLPIIALTASALAGDREKLLAAGMDYFITKPIH 1786
Query: 1120 RDHLMEAIK 1128
HL++ ++
Sbjct: 1787 EAHLIQLLE 1795
>gi|357117708|ref|XP_003560605.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
Length = 997
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 105/360 (29%), Positives = 164/360 (45%), Gaps = 53/360 (14%)
Query: 319 ILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQ-AERKSMNKSLAFANA 377
+ +I M VG +I AA ++MEA ++ AE + KS A
Sbjct: 339 VFVICMLVGYII----------YAAWTHYDNVKEDCRKMEALKKRAEAADVAKSQFLATV 388
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGLLNSILDTSKVE 433
SH+IR + G+ G++++ +EL++ R VC L+ L+N +LD +K+E
Sbjct: 389 SHEIRTPMNGVLGMLDMLL-----DTELKSTQRDYAQTAQVCGKALISLINEVLDRAKIE 443
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQI 493
A K++L FD+ +L+DVV LF + KG+E+ + S+ + GD + +QI
Sbjct: 444 ARKLELESVPFDLRSILDDVVSLFSSKSSEKGIELAVYVSERVP---ELLLGDPGRFRQI 500
Query: 494 LSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL-------------------SSSRH-- 532
++NL+ N++KFT GHI V+ + S + + SS H
Sbjct: 501 ITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKVEPVVNGINGHKDETSTISSSVSHNT 560
Query: 533 --GFLQSISCLFYKNKKARGDLEAVNAAQRDE-NAMEFTFEVDDTGKGIPKEKRKTVFEN 589
GF + S ++N K E E + + V+DTG GIP + VF
Sbjct: 561 LSGFEAADSRNSWENFKLLLSYETNEMPYGSESDKVTLVVSVEDTGIGIPIHAQDRVFTP 620
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
++Q GGTG+GL I Q LV LMGG I V + + G+ F F L E +A
Sbjct: 621 FMQADSSTSRNYGGTGIGLSISQCLVELMGGQINFVSRP--QVGSTFTFTAVLQRCERNA 678
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + RVA L+ GA VE E+G+ AL L L PH
Sbjct: 849 LLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALAL----------LQVPH--K 896
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEE-------------------KRNQVHIPIIALTAH 1096
+D LMD +MP M+G+EATR+IR E KR + H+P++A+TA
Sbjct: 897 FDLCLMDIQMPEMDGFEATRQIRAMEAKAHDQEDDAYNSEADSTAKRAEWHLPVLAMTAD 956
Query: 1097 ISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
+ ++ + GMD ++ KP L +A+ K+L
Sbjct: 957 VIQATHEECTKFGMDGYVSKPFEEKQLFQAVEKFL 991
>gi|218193648|gb|EEC76075.1| hypothetical protein OsI_13298 [Oryza sativa Indica Group]
Length = 923
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 164/354 (46%), Gaps = 55/354 (15%)
Query: 319 ILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQ-AERKSMNKSLAFANA 377
+ +I M VG +I AA ++MEA ++ AE + KS A
Sbjct: 259 VFVICMLVGYII----------YAAWSRYDNVKEDCRKMEALKKRAEAADIAKSQFLATV 308
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGLLNSILDTSKVE 433
SH+IR + G+ G++++ +EL++ R VC L+ L+N +LD +K+E
Sbjct: 309 SHEIRTPMNGVLGMLDMLL-----DTELKSTQRDYAQTAQVCGKALISLINEVLDRAKIE 363
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV-KGDRVKLKQ 492
AGK+ L FD+ +L+DV+ LF + KG+E+ + S+ + ++ GD + +Q
Sbjct: 364 AGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSE----RVPEILLGDPGRFRQ 419
Query: 493 ILSNLLSNAVKFTSEGHISVRACV---------------------KKPSAIGNPSLSS-- 529
I++NL+ N++KFT GHI V+ + K AI P+ S
Sbjct: 420 IITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKIEPVVNGMNGHKDEAIAIPTSGSHN 479
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAA-QRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
+ GF + S ++N K E + D + + V+DTG GIP + VF
Sbjct: 480 TLSGFEAADSRNNWENFKLLLSYEKNEMPYESDSDKVTLVVSVEDTGIGIPLHAQGRVFT 539
Query: 589 NYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
++Q GGTG+GL I + LV +MGG I V + G+ F F L
Sbjct: 540 PFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRP--LVGSTFTFTAVL 591
Score = 84.0 bits (206), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 30/151 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK ILV DD+ + RVA L+ GA VE E+G+ AL L L PH
Sbjct: 776 LLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSL----------LQVPH--K 823
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEE------------------KRNQVHIPIIALTAHI 1097
+D LMD +MP M+G+EATR+IR E K + H+PI+A+TA +
Sbjct: 824 FDLCLMDIQMPEMDGFEATRQIRAMEGKANEQADDSESGSEIAAKTAKWHLPILAMTADV 883
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
++ + GMD ++ KP L +A++
Sbjct: 884 IQATHEECTKCGMDGYVSKPFEEKQLFQAVQ 914
>gi|456823491|gb|EMF71928.1| GHKL domain protein [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456968885|gb|EMG09996.1| GHKL domain protein [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
gi|456988141|gb|EMG23289.1| GHKL domain protein [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 499
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 151/302 (50%), Gaps = 51/302 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 101 IQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 159
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL +P+A +K + L +G
Sbjct: 160 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRL---EGK 216
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ V GD ++L+QIL NL N +KFTS G + ++ K N S SS
Sbjct: 217 LEIQEYVYGDPLRLRQILWNLAGNGIKFTSRGEVVLKVTQK------NISKSSV------ 264
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++EFT V D+G GIP EK+K VFE + Q
Sbjct: 265 ---------------------------SIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 295
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
GG+GLGL I + LV L GG +++ + ++GE G+ F F + I A + +
Sbjct: 296 TARKFGGSGLGLSITKQLVELQGGVLKL-ESKDGE-GSKFTFTIDYDIPSALEIEKILEA 353
Query: 653 EK 654
EK
Sbjct: 354 EK 355
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++ ++
Sbjct: 357 KDLEKSFQDVVAKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQ----- 411
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+ +D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 412 --------LEAFDIILMDIHMPEVDGIEATKWIRSKNQNSEFPI-IIALTADAIESSKEK 462
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 463 YISKGMNDCLTKPLD 477
>gi|428317521|ref|YP_007115403.1| serine/threonine protein kinase and signal transduction histidine
kinase [Oscillatoria nigro-viridis PCC 7112]
gi|428241201|gb|AFZ06987.1| serine/threonine protein kinase and signal transduction histidine
kinase [Oscillatoria nigro-viridis PCC 7112]
Length = 2024
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 39/288 (13%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH++R L GI G ++ + G S+ + + ++ C LL L+N +LD
Sbjct: 1552 KSQFLANMSHELRTPLNGILGYTQILKRDTGLTSQQNSGINIIHQCGEHLLTLINDVLDL 1611
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAGKM+L +F + + L+ + ++ A +KG+ ++ +P + + V+ D +
Sbjct: 1612 SKIEAGKMELYLTEFHLSDFLQGITEICQIRAQQKGISLIYEP---LIPLPTCVQADEKR 1668
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+QIL NLL NA+KFT +G +S + R QS+S
Sbjct: 1669 LRQILINLLGNAIKFTEKGGVSFKV---------------DRLETQQSLSS--------- 1704
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG---GTGLGLGI 606
A +F F+V+DTG GI ++ +F + QV GTGLGL I
Sbjct: 1705 ------PIANPPSPTAKFIFQVEDTGIGIGPDELSKIFLPFEQVSGSVSQIEGTGLGLPI 1758
Query: 607 VQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
+ LV +MGG++++ + + +G+ F F + L I E S N+ + EK
Sbjct: 1759 SRQLVEMMGGELKV--QSSLGKGSIFWFELELPITE-SWEGNHKEPEK 1803
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 23/172 (13%)
Query: 964 LKTGNSSGEGSSRYKQTEI---EEEDGERSQAQKPLRG-----KKILVADDSMMLRRVAE 1015
LK +S G+GS + + E+ E +G + +K +R +KILV DD R V
Sbjct: 1770 LKVQSSLGKGSIFWFELELPITESWEGNHKEPEKIIRSFSGNRRKILVVDDRWQNRSVLV 1829
Query: 1016 INLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075
L +G + +G+ + ++ L P D I++D MP+M+G+EA R
Sbjct: 1830 NLLAPIGFELMEATDGQDCV--------NKALLFQP-----DCIVIDLVMPVMDGFEAVR 1876
Query: 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+IR+ V IA +A I + +AG + L KP+ + L+E +
Sbjct: 1877 RIRKIPALKDV--IAIATSASILSGDPQSIFQAGCNAFLLKPIRAEKLLECL 1926
>gi|381157616|ref|ZP_09866850.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
gi|380881479|gb|EIC23569.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
Length = 1398
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 140/288 (48%), Gaps = 51/288 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
M A +QAE + +KS AN SH+IR + I G LC ++ + L +++ +
Sbjct: 628 MLAKEQAETANQSKSAFLANMSHEIRTPMNAIMGFSHLC-MQTQLSEKQYGYLEKIHTAS 686
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LLGL+N ILD SKVEAG+++L F++ E++E V + A +KG+E ++D +D
Sbjct: 687 QSLLGLINDILDVSKVEAGRLELERIPFELDEVIERVASIIAIRAEQKGLEFLID-TDLE 745
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ + GD ++L Q+L NLLSNAVKFT G +S+R ++
Sbjct: 746 IPP--HLIGDPLRLGQVLLNLLSNAVKFTERGEVSLRIALQG------------------ 785
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
R+ + E TFEV D+G G+ + +F + Q
Sbjct: 786 -----------------------REHDTAELTFEVQDSGIGMSEADAARLFRPFTQADSS 822
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GG+GLGL I + LV +MGG + + GE G+ F F+ L +
Sbjct: 823 TTRKYGGSGLGLVISKRLVEMMGGALRF-RSQPGE-GSVFYFSAELGL 868
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 80/144 (55%), Gaps = 20/144 (13%)
Query: 985 EDG-ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLN 1043
+DG R+Q Q G ++L+ +D+ + ++VA L G V ENG+ AL+++R
Sbjct: 1023 DDGASRAQVQ----GARLLLVEDNPINQQVACELLAGAGIGVMVAENGQQALEILRRE-- 1076
Query: 1044 DQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD 1103
+D +LMD +MP+M+G ATR IR + + +P+IA+TA+ + +
Sbjct: 1077 -----------TFDGVLMDMQMPVMDGVTATRAIRAQTALQR--LPVIAMTANAMASDIE 1123
Query: 1104 KTIEAGMDVHLGKPLNRDHLMEAI 1127
+ EAGM+ H+ KP++ D L + +
Sbjct: 1124 RCREAGMNDHIAKPIDPDVLFQVL 1147
>gi|300868943|ref|ZP_07113548.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
gi|300333066|emb|CBN58740.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
Length = 1739
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 156/306 (50%), Gaps = 26/306 (8%)
Query: 345 KEMHLCASLIKQMEATQQA----ERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
++ L A KQ A QQA + + KS A SH++R L I G ++ +
Sbjct: 1217 QQAELLAQTQKQSVALQQAAIAADTANRAKSEFLAAMSHELRTPLNAILGFTQVMSRDPT 1276
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
+ + NL +N LL L+N IL+ SK+EAG+ +L +FD+ LL + ++
Sbjct: 1277 LNQQQQENLGIINRAGEHLLNLINDILEMSKIEAGQAELNLSNFDLIGLLFSLEEMLRLK 1336
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
A KG+ ++ D + V ++ V+ D KL+QIL N+L NAVKFT +G +++R V+
Sbjct: 1337 AESKGLHLIFDIA-PDVPQY--VQADEGKLRQILINILGNAVKFTEKGSVTLR--VRNKE 1391
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
N S+ S R + + Y + L + + ++ FEV DTG GI
Sbjct: 1392 IATNASI-SDRLELTDRVESINYPSS-----LLPITS------SLCLQFEVKDTGPGISP 1439
Query: 581 EKRKTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
E+ +FE + Q + G + G+GLGL I Q V+LMGGDI + + + GT F F++
Sbjct: 1440 EEINQLFEAFTQTETGRKSQQGSGLGLPISQKFVQLMGGDIAV--RSILKWGTAFTFDIP 1497
Query: 638 LAIREA 643
+ + EA
Sbjct: 1498 VIMVEA 1503
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 20/153 (13%)
Query: 982 IEEEDGERSQAQKPLRG-------KKILVADDSMMLRRVAEINLRHLGATVEACENGEAA 1034
+E D + SQ Q+ + G +ILV +D R + +R +G V ENG A
Sbjct: 1501 VEARDIQTSQPQQKVIGLAPNQPNYRILVVEDRYENRLLLVALIRAIGFEVCEAENGREA 1560
Query: 1035 LQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALT 1094
++L + PH+ I MD MP+M+GYEAT+ I+++E II +T
Sbjct: 1561 IELWSNW--------EPHL-----IWMDMRMPVMDGYEATKYIKDKEHLRGQKTVIIGIT 1607
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
A EE + + AG D + KP + ++E +
Sbjct: 1608 ASAFEEERSQVLSAGCDDFVRKPFRDEAILEMM 1640
>gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37]
gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
Length = 968
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 149/319 (46%), Gaps = 60/319 (18%)
Query: 334 TFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIE 393
+FVF A + RK + + + + A + S KS A SH+IR + G+ G+ E
Sbjct: 410 SFVFMEA-SIRKNIQ------QALHEKEIAVKASQAKSEFLATMSHEIRTPMNGVLGMTE 462
Query: 394 LCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDV 453
L +E SE + + LL ++N ILD SK+EAGK+QL + EL++ +
Sbjct: 463 LV-LETELSSEQRRFMEMIKSSGFGLLDIINDILDFSKIEAGKLQLDNHPMQLQELIKHL 521
Query: 454 VDLFHPVAMRKGVEVVLD-PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISV 512
V P+A +KG+++ + P + + V GDR++L+Q+L+NL+SNA+KFT G + V
Sbjct: 522 VTSLSPLAKKKGLQLNYNLPQEMD----TWVLGDRIRLRQVLTNLISNAIKFTQRGEVLV 577
Query: 513 RACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVD 572
A + + SA A+ V
Sbjct: 578 SAVIFEQSA-----------------------------------------TALSLQIRVR 596
Query: 573 DTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGER 628
D+G GI E + +FE++ Q GGTGLGL I + L+ +MGG I E G+
Sbjct: 597 DSGIGIAPENQDKIFESFSQADSSTTRNYGGTGLGLAISKQLIEMMGGSIGF-SSELGQ- 654
Query: 629 GTCFRFNVFLAIREASAND 647
GT F F++ L E +D
Sbjct: 655 GTTFWFDLKLKPTEQILSD 673
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 15/135 (11%)
Query: 991 QAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGA 1050
Q Q L+GK +LV D + +I L LG + NG AL+ L +Q
Sbjct: 683 QQQITLQGKILLVEDHPVNQEFAMQI-LSGLGVDLHLAGNGVEALK----QLKEQN---- 733
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTAHISGEEADKTIEAG 1109
YD +LMDC+MP+M+GY AT IR++E+ N +PIIALTA+ E+ + I AG
Sbjct: 734 -----YDLVLMDCQMPVMDGYRATELIRQKEQENGSPRLPIIALTANAMIEDRQRCISAG 788
Query: 1110 MDVHLGKPLNRDHLM 1124
MD +L KP N+ ++
Sbjct: 789 MDDYLSKPFNKAQIV 803
>gi|408788053|ref|ZP_11199776.1| two component sensor kinase/response regulator hybrid [Rhizobium
lupini HPC(L)]
gi|408486131|gb|EKJ94462.1| two component sensor kinase/response regulator hybrid [Rhizobium
lupini HPC(L)]
Length = 1144
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 135/291 (46%), Gaps = 63/291 (21%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN----VCAN 417
+AE KS AN SH+IR + G+ G+ EL S L+T + N
Sbjct: 585 RAEAADRAKSEFLANMSHEIRTPMNGVLGMAELL-----AKSNLDTRQKTFTDIIVKSGN 639
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDG 475
LL ++N ILD SK+EAG+M+L FD E +EDVV L A+ K +E+V + PS
Sbjct: 640 ALLTIINDILDFSKIEAGQMKLRSVSFDPAEAVEDVVSLLSSAALEKNIELVVRIAPS-- 697
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
F KV GD + +QI++NL+ NAVKFT GH+ V + A
Sbjct: 698 ---VFGKVIGDAGRFRQIVTNLVGNAVKFTETGHVLVELSAQSAEAS------------- 741
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
EA+ + V+D+G GIP +K +T+F+ + QV
Sbjct: 742 -----------------EAI-----------LSLRVEDSGIGIPSDKLETIFDKFSQVDS 773
Query: 596 G----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GTGLGL I LV L G I++V E G +G+ F N+ + E
Sbjct: 774 SATRRHEGTGLGLAITVGLVGLFNGKIDVV-SEVG-KGSSFEVNIPFQMTE 822
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 1059 ILMDCEMPIMNGYEATRKIREEE--KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
ILMD MP+MNG++AT+ IR E H+PII +TAH + D ++AGMD +L K
Sbjct: 1055 ILMDVSMPVMNGHQATQAIRTAELAAAEGRHVPIIGVTAHTQDADRDLCLQAGMDDYLSK 1114
Query: 1117 PLNRDHLMEAI 1127
P++ + L + I
Sbjct: 1115 PISPEILEDKI 1125
Score = 46.6 bits (109), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 20/166 (12%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQKPL----RGKKILVADDSMMLRRVAEINLRHLGATVE 1026
G+GSS + I + ER + PL ++LV DD+ + RR+ L+ G
Sbjct: 807 GKGSS--FEVNIPFQMTERRRDVPPLSVAIENIRVLVIDDNDVNRRILTEQLQSWGIDGH 864
Query: 1027 ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV 1086
A E G L +++ + +G L D I++D MP+MNG + +IR + + + +
Sbjct: 865 AVEGGPTGLAVLQEAVA----VG----LSIDAIILDYHMPVMNGLDVVERIRADRRFDDI 916
Query: 1087 HIPIIALTAHISGEEADKTIEAGMDVHLGKP----LNRDHLMEAIK 1128
I I + + G+E T + + HL KP L R L + ++
Sbjct: 917 AI-IFLTSMDVVGDETLFT-DLNVQAHLMKPARARLLRSTLFDVVR 960
>gi|94499808|ref|ZP_01306344.1| putative sensor protein [Bermanella marisrubri]
gi|94428009|gb|EAT12983.1| putative sensor protein [Oceanobacter sp. RED65]
Length = 938
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 144/291 (49%), Gaps = 56/291 (19%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K ++A +QAER + KS AN SH+IR + G+ G+++L G + L Q+N+
Sbjct: 412 KMIQAKEQAERATQAKSEFLANMSHEIRTPMNGVLGMLKLVRKSKGLNRD---QLHQINL 468
Query: 415 C---ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD 471
A LL ++N ILD SK+EAGK+ L DF++ E + D+ + A +K +++ LD
Sbjct: 469 AHTSAESLLVVINDILDFSKIEAGKINLETIDFNLLEWISDISESLAFHAHKKDIDLSLD 528
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
SD + + + GD +++Q++SNL+ NA+KFT++G + ++ K P S+
Sbjct: 529 ISD---VTYFNLIGDPNRVRQVISNLVGNAIKFTNDGWVKIKLSTK-------PEKSN-- 576
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
L +SC + DTG GI +++ +F +
Sbjct: 577 ---LIKLSC-----------------------------SIKDTGIGIAEDRLDKLFSAFE 604
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
Q GGTGLGL I + L +MGGD+ + G+ F F++F+
Sbjct: 605 QADNSTTRQYGGTGLGLAIAKKLCEIMGGDVTV--SSTPGVGSQFSFHIFI 653
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 31/210 (14%)
Query: 930 SRRDIMPNASVLLKTGNSSGEGPRRDI---------MPNASVLLKTGNSSGEGSSRYKQT 980
++ +++ A V+L T + EGP DI P + L S EGS
Sbjct: 743 NQLELIDTAKVVLMT-RITNEGPT-DIASCKLIDFYFPKPATPLDLFKSLSEGSF----- 795
Query: 981 EIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRS 1040
I E D E S ++G IL+ +D+ + + +A L LG T E +NG AL ++++
Sbjct: 796 -IREYD-EPSHHGIQVKGH-ILLVEDNPINQEIAVSVLDDLGITSEVADNGRIALDILKN 852
Query: 1041 GLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISG 1099
+ +D ILMDC+MP ++GY+ + IR+ + + +PI+A+TA+
Sbjct: 853 NPD-----------CFDMILMDCQMPELDGYQTSIAIRDGQAGDHAKSLPIVAMTANAME 901
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
+ +K I AGMD +L KP++ D L+ +K+
Sbjct: 902 GDKEKCIAAGMDDYLSKPIDVDLLLIKLKH 931
>gi|396500787|ref|XP_003845808.1| similar to autoinducer 2 sensor kinase/phosphatase luxQ
[Leptosphaeria maculans JN3]
gi|312222389|emb|CBY02329.1| similar to autoinducer 2 sensor kinase/phosphatase luxQ
[Leptosphaeria maculans JN3]
Length = 2006
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 144/292 (49%), Gaps = 46/292 (15%)
Query: 350 CASLIKQMEATQQAERKSMN-KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN 408
A+ I + +Q +++M+ KS +N SH+IR L GI+G++ +LE +
Sbjct: 1264 TATDINDHKLLEQTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDSVLNSEQLE-H 1322
Query: 409 LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
+ + + LL L+N ILD SKVEAG ++L E V LLE+V DL +A++KG+E+
Sbjct: 1323 VNIIKASTDSLLNLINDILDLSKVEAGMIKLSMEWLHVPSLLEEVNDLNMGLAIQKGLEL 1382
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
+G + VKGD+ +++Q+L N++ NA+KFT+ G I VR ++ P
Sbjct: 1383 NYLVEEGVP---TMVKGDKFRIRQVLLNVVGNAIKFTNRGEIFVRCKMQPP--------- 1430
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
R G L+ E+ FEV DTG+G + + K +F+
Sbjct: 1431 -DRSGLLK-------------------------EHETMIRFEVVDTGQGFTEAEAKHLFK 1464
Query: 589 NYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ Q+ GGTGLGL I V L GG ++ + RG+ F F +
Sbjct: 1465 RFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDA--QSVPGRGSTFFFTI 1514
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRN--QVHIPIIALTAHISGEEADKTIEAGMDVH 1113
+ IL D MP +GY+A ++IR+ EK++ + H PIIAL+A++ G+ K +EAG + +
Sbjct: 1915 FSIILCDLHMPNKDGYQACKEIRQWEKKHGYRRH-PIIALSANVLGDVYAKCVEAGFNSY 1973
Query: 1114 LGKPLNRDHLMEAI-KYL 1130
+ KP+ L A+ K+L
Sbjct: 1974 VTKPVEFKELSLAMTKFL 1991
>gi|256829197|ref|YP_003157925.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256578373|gb|ACU89509.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 918
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 146/310 (47%), Gaps = 73/310 (23%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR---QMNVC 415
A + AE + KS AN SH+IR L GI G+++L LET+++ ++ C
Sbjct: 534 AKEHAEAANRAKSEFLANMSHEIRTPLNGILGMLQL----------LETSVQDKEELQFC 583
Query: 416 A------NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
A N L LL+ ILD S+VEA M + E F++ L +DLF PVA++ GV +
Sbjct: 584 ALAIQSTNRLTSLLSDILDLSRVEASMMLIRSERFNLHSALTQTIDLFGPVAVQTGVTLT 643
Query: 470 --LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
LDP G + V GD ++L+Q+L+NL+ N+ KFT GH+ V
Sbjct: 644 AHLDP--GLPI---WVVGDSIRLQQVLTNLIGNSFKFTKRGHVHV--------------- 683
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
EA R + + F ++DTG GI ++ +F
Sbjct: 684 -------------------------EAYPLPSRSIDTLRVFFAIEDTGCGIAEKDIGNLF 718
Query: 588 ENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ + QV +G G GLGL I + LV LMGG++ V+ E G GT F F V + +E
Sbjct: 719 QPFTQVSQGYNRNHQGAGLGLTISKQLVALMGGNMA-VESEEG-VGTTFAFCVTFS-KEV 775
Query: 644 SANDNNTQGE 653
+D+ E
Sbjct: 776 QPHDDEAAPE 785
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 983 EEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGL 1042
++E S P + +L DD ++ + L G +V NG+ AL++ +
Sbjct: 779 DDEAAPESLTAPPTSLQILLAEDDETTGFSISRL-LEKSGHSVTLAHNGQEALEMHEAN- 836
Query: 1043 NDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEA 1102
+D ILMD MP+M+G A R+IR ++ +PIIALTA+ +
Sbjct: 837 ------------NFDLILMDVSMPVMDGIAACRRIRGSRNSHKRDVPIIALTAYAMAGDK 884
Query: 1103 DKTIEAGMDVHLGKPLNRDHLMEAI 1127
+K + AGM ++ KP+ + LM+ +
Sbjct: 885 EKFLAAGMSGYVAKPVTMETLMQMM 909
>gi|333892687|ref|YP_004466562.1| sensory box histidine kinase/response regulator [Alteromonas sp.
SN2]
gi|332992705|gb|AEF02760.1| sensory box histidine kinase/response regulator [Alteromonas sp.
SN2]
Length = 929
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 151/321 (47%), Gaps = 61/321 (19%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
I++T+ + +L F+F ++E+ E + + KS A SH+I
Sbjct: 380 IIVTICCVAILLFFMFVITLKQKRELR---------ELALNLQNATDAKSEFLARMSHEI 430
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE 441
R + I GL +L ++ E +TNL Q+ + LLG++N +LD SK+EAGK+ +
Sbjct: 431 RTPVNAIVGLTKLTQ-KSVVNEEQKTNLSQIEQSSQTLLGVINDVLDFSKIEAGKLNIES 489
Query: 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNA 501
E F++ +L+E V+ L A K +E++ + L +V GD ++++Q+L+NLLSNA
Sbjct: 490 EVFELDKLVEQVIRLHGINAKEKRIELLQYVARDVPL---QVSGDALRIEQVLNNLLSNA 546
Query: 502 VKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRD 561
+KFT EG + V K S HG L
Sbjct: 547 IKFTDEGMVFVSVNKK-----------YSEHGVL-------------------------- 569
Query: 562 ENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGD 617
F V DTG G+ + +++F+ + Q E GGTGLGL I + LV LMGG+
Sbjct: 570 -----LEFSVKDTGIGLSTNQIESLFDAFTQADESITRKYGGTGLGLSICKHLVSLMGGE 624
Query: 618 IEIVDKENGERGTCFRFNVFL 638
I + K +G F F V +
Sbjct: 625 IWVESKLG--QGATFFFTVLV 643
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 17/140 (12%)
Query: 990 SQAQKP--LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
S+A+ P K IL+ +D + R+VA++ L A V ENG A+Q++ +Q +
Sbjct: 797 SEAKAPPDFSDKNILLVEDDAINRKVAKLFLADTKAKVSVAENGLIAMQML-----EQEN 851
Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE 1107
+ +D +LMD +MP+M+G A +KIREE K + +PI+A+TAH E +K+
Sbjct: 852 V-------FDLVLMDMQMPVMDGLTAAQKIREELK---LDVPIVAMTAHAMQTEIEKSFA 901
Query: 1108 AGMDVHLGKPLNRDHLMEAI 1127
GM+ H+ KP+ ++L +
Sbjct: 902 VGMNAHIVKPVKPEYLYHVL 921
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 16/127 (12%)
Query: 1000 KILVADDSMMLRR-VAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K+LV DD+M+ R+ +AE LR + + G+ AL +R+ + +PYD
Sbjct: 664 KVLVVDDTMLSRQAIAEALLR-ININPDLATGGKEALMYLRTAVASN--------VPYDL 714
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI--EAGMDVHLGK 1116
I++D +M ++G E I +E + + +I + L+A+ E+ KT+ G++ +L K
Sbjct: 715 IIIDWKMADIDGIELASIINQEFSQGKPNIAM--LSAY--DIESLKTLGRPVGVEYYLQK 770
Query: 1117 PLNRDHL 1123
P+N L
Sbjct: 771 PVNSSSL 777
>gi|423205474|ref|ZP_17192030.1| TMAO reductase sytem sensor TorS [Aeromonas veronii AMC34]
gi|404624015|gb|EKB20860.1| TMAO reductase sytem sensor TorS [Aeromonas veronii AMC34]
Length = 941
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 144/288 (50%), Gaps = 50/288 (17%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQMN 413
KQ +A +AE+ + KS+ A SH+IR + GI G L +E S+ + L +
Sbjct: 433 KQRQARAEAEQANRAKSVFLATMSHEIRTPMNGILG--GLTLLEDTHLSDTQQRYLAAIE 490
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
LL +LN ILD SK+EAG ++ E F + +L++++ LF P A KGV + L+ +
Sbjct: 491 HSGESLLEILNDILDYSKIEAGHVEARREPFPLFQLVDELSALFRPKAAAKGVTLALEYA 550
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
G V+GD KL+Q+L NLL NAVKFT+ G I++ + P A P
Sbjct: 551 PGLA---PVVEGDLGKLRQVLGNLLGNAVKFTARGQITL---MVAPLACQGPC------- 597
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+ C+ F V DTG GIP ++++ VFE + Q
Sbjct: 598 ---AEPCI--------------------------RFVVRDTGPGIPGDEQEAVFEAFRQR 628
Query: 594 KEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
K +GGTGLGL I + LV MGG++ I+ E G +G F F++ L
Sbjct: 629 KRDIGHQGGTGLGLAISRKLVAAMGGEL-ILASEPG-KGCEFSFSLPL 674
>gi|392423698|ref|YP_006464692.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
gi|391353661|gb|AFM39360.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
Length = 914
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 151/312 (48%), Gaps = 64/312 (20%)
Query: 353 LIKQMEATQQAERK-----------SMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
I+ +E Q+ E++ ++ KS AN SH+IR + GI G IEL + P
Sbjct: 372 FIESLEEKQKTEQELIKAKEAAEAANVAKSQFLANMSHEIRTPMNGIIGYIEL--LSTMP 429
Query: 402 -GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
E + + ++ + LL L+N ILD SK+EAGKM + FD+ +L+ED V LF P
Sbjct: 430 LEKEQASYIAEVKASTDALLVLINDILDYSKIEAGKMFIDNAPFDLYKLIEDSVSLFSPK 489
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
A KG+E++ ++G S+V+GD +L+Q+L+N++ NAVKFT +G ++++
Sbjct: 490 AHSKGIEILSFIAEGVP---SQVQGDPGRLRQVLNNIIGNAVKFTDKGEVTLK------- 539
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
+ A + E+ + ++ DTG GI +
Sbjct: 540 ----------------------------------ITALKEIEDKVLLQIDIKDTGIGISE 565
Query: 581 EKRKTVFENYVQVKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
E K +F+ + Q GTGLGL I + ++ LMGG I V+ E G RG+ F +
Sbjct: 566 EDMKCLFQVFTQADASTTRKYEGTGLGLAISRRILELMGGSIT-VNSELG-RGSTFTLTL 623
Query: 637 FLAIREASANDN 648
+ E D+
Sbjct: 624 EMEKSEIKVEDD 635
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 15/131 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+ +D + +R+ I L+ LG + NG+ A++L D R YD I
Sbjct: 793 ILLVEDKEVNQRIELIMLKRLGYSANIAVNGKQAVELC-----DTR--------KYDIIF 839
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MDC+MP+M+GYEAT +IR+ N+ H PIIA+TAH + ++ + AGMD ++ KP+
Sbjct: 840 MDCQMPVMDGYEATDRIRKMSSLNK-HSPIIAMTAHAMEGDRERCVAAGMDDYISKPVTL 898
Query: 1121 DHLMEAI-KYL 1130
L E + KYL
Sbjct: 899 AALEEMLGKYL 909
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 971 GEGSS-----RYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATV 1025
G GS+ +++EI+ ED +S + L G +L+ DD+ R + L+ V
Sbjct: 614 GRGSTFTLTLEMEKSEIKVEDDLQSTS---LEGLNLLIVDDNESNRMIFREYLKETNCKV 670
Query: 1026 EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQ 1085
+ NG L++++ GL D+ P I+ DY+ MP M G E +K++E E+
Sbjct: 671 MSVNNGREGLEILK-GLGDE---NLPQIILVDYM-----MPEMTGIEFGKKVKEIERFKH 721
Query: 1086 VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ + +++ A + KTI G ++ KP+ + L++AI
Sbjct: 722 IKLILLSSAARLDARLI-KTI--GFSGYICKPVRKKELLKAI 760
>gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
DSM 45221]
gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
DSM 45221]
Length = 885
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 136/284 (47%), Gaps = 51/284 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
M A ++A+ + K A SH+IR + G+ G ELC E +E L + C
Sbjct: 226 MTAMKEAQAANRAKGEFLAAMSHEIRTPINGVIGASELCQ-ETELDAEQRAYLDTVIQCG 284
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
N LL L+N +LD SK+EAG++ L + +F+ +LE+V++ F +KG+E++L D
Sbjct: 285 NTLLSLVNDVLDFSKIEAGQLNLEQLNFNPEAVLEEVIEEFAGTVKKKGIELIL-SCDDR 343
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ K+ V GD +LKQI NLL NAVKFT G I + A + + SA L+ R
Sbjct: 344 MPKY--VIGDPTRLKQIFYNLLGNAVKFTEAGEIVLSAHIVERSA----QLAVIR----- 392
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
F+V DTG GI + +R+ +F ++ Q
Sbjct: 393 --------------------------------FKVRDTGIGISETRREAIFSSFTQEDMS 420
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL I + L LM G + VD GE G+ F V
Sbjct: 421 TTRRYGGTGLGLAICKELTELMAGSLS-VDSRVGE-GSTFTLEV 462
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 16/130 (12%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+A+D+ + + +A+ L+ LG V NG AL+ V A H +D IL
Sbjct: 631 ILLAEDNEVNQNIAKRRLKKLGHEVTVAVNGHEALEQV-----------AQH--DFDCIL 677
Query: 1061 MDCEMPIMNGYEATRKIREEEKRN--QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MD +MP M+GYEAT++IR E ++ H I+A+TAH +A++ MD ++ KP
Sbjct: 678 MDIQMPGMDGYEATQEIRNLEIQDGRSRHF-IVAMTAHAMEGDAERCFANDMDEYISKPF 736
Query: 1119 NRDHLMEAIK 1128
+ L E ++
Sbjct: 737 RVERLQEVLE 746
>gi|326487932|dbj|BAJ89805.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1019
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 150/310 (48%), Gaps = 25/310 (8%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
++AE + KS A SH+IR + G+ G++++ ++ + + +R L+
Sbjct: 425 KRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQM-LMDTDLDTTQQDYVRTAQASGKALV 483
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
L+N +LD +K+E+GK++L DV + +D++ LF A KG+E+ + SD
Sbjct: 484 SLINEVLDQAKIESGKLELDAVPLDVRLVCDDILSLFCGKAQEKGLELAVYVSDQVP--- 540
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
+ GD +++QI++NL+ N++KFT GHI + V + + ++ + C
Sbjct: 541 QTLIGDPNRMRQIITNLMGNSIKFTERGHIYLTVHVVEEVMCSLDVETEIQNTYNTLSGC 600
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTF------------EVDDTGKGIPKEKRKTVFE 588
K + + N D ++ E F V+DTG GIP E + +F
Sbjct: 601 EVAKRRLSWQSFRLFNM---DLHSSELPFAPIMPETIRLIISVEDTGVGIPLEAQSRIFT 657
Query: 589 NYVQV----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
++QV GGTG+GL I + LV LM G+I V K + G+ F F L+ +
Sbjct: 658 PFMQVGPSIARTHGGTGIGLSISKCLVHLMKGEIGFVSKHH--VGSTFSFTAVLSRARPN 715
Query: 645 ANDNNTQGEK 654
AN N + G K
Sbjct: 716 ANVNKSPGFK 725
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 29/149 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L +KI+V DD+ + +VA L+ GA V ++G+ A+ L++ PH
Sbjct: 872 LHKRKIIVVDDNAVNLKVAAGALKKYGAEVICADSGKKAIALLKP----------PH--S 919
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR-----------------NQVHIPIIALTAHIS 1098
+D MD +MP M+G+EAT++IR E+ + PI+A+TA +
Sbjct: 920 FDACFMDIQMPEMDGFEATKRIRMMERELNERVERGEAPPECANVRRWRTPILAMTADVI 979
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ ++ MD ++ KP + L +
Sbjct: 980 QATYEHCLKCEMDGYVSKPFEGEQLYREV 1008
>gi|399994314|ref|YP_006574554.1| signal transduction histidine kinase [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|398658869|gb|AFO92835.1| signal transduction histidine kinase [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 764
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 50/281 (17%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH+IR + G+ G+ EL + E + + LL ++N +LD
Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLS-DTNLSDEQQLYANTIKNSGEALLVIINDVLDY 274
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EA K++L E FD+ + +V+ L P A KG+ ++L D + + GD +
Sbjct: 275 SKIEAQKLELHPEPFDLERSVHEVLMLLQPTARDKGLTLLL---DYDLFLPTSFVGDPGR 331
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
++Q+L+NL+ NAVKFTSEGH++++ + I N
Sbjct: 332 IRQVLTNLVGNAVKFTSEGHVALQI-----TGISNA------------------------ 362
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG----GTGLGLG 605
GD ++DTG GIP+EK + +F + QV++ GTGLGL
Sbjct: 363 GD-----------KICSIHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGTGLGLA 411
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
I + L+ LMGG+I + +E +G+CF F + L + E ++
Sbjct: 412 ISKRLIELMGGEIWVESQEG--KGSCFGFRMELPLAEGAST 450
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R ++L A+D+ + V ++ L ++ NG A+++ +S
Sbjct: 625 RLMRVLAAEDNRTNQLVFRKMVKDLNIDLQFVSNGIEAVEVYQS-------------FQP 671
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D I MD MP+M+G EAT+KIR E ++ P++ALTAH ++D + AG+D +L K
Sbjct: 672 DLIFMDISMPVMDGKEATQKIRALEHGTGIYTPVVALTAHAMAGDSDGILAAGLDHYLTK 731
Query: 1117 PLNRDHLMEAI 1127
PL + + E I
Sbjct: 732 PLRKALIHERI 742
Score = 40.4 bits (93), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 18/126 (14%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+I V D ++R V L LG V +NG AA+ +G+ D DL +
Sbjct: 461 QIAVIDSQSVMRDVLSKQLAMLGLEVTVFDNGAAAI----AGMPDGVDL----------V 506
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+ D ++P NG E +K+R +PI+ L++ + ++ +++ D L KP+
Sbjct: 507 VCDEQLPDQNGVELAQKLRSGPF---AQVPILMLSSDPTA-PSNSDVQSVTDSVLLKPIQ 562
Query: 1120 RDHLME 1125
RD L +
Sbjct: 563 RDELFQ 568
>gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
OS217]
gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans
OS217]
Length = 1233
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 141/294 (47%), Gaps = 63/294 (21%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN--- 413
+EA AE +M KS AN SH+IR + I G+++L S + L+Q +
Sbjct: 709 LEAKHDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLA-------SRTQLTLQQQDYLN 761
Query: 414 ---VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
A LL ++N ILD SK+EAGK++L F + ++L+ V+D+ A KGVE++L
Sbjct: 762 KAGFSAESLLRIINDILDFSKIEAGKLELESVPFSLEKVLDHVIDMNALSAQEKGVELLL 821
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+ L +KGD ++L Q+L NLLSNAVKFT +G I
Sbjct: 822 FSPLTTGL---TLKGDPLRLGQVLVNLLSNAVKFTQDGEI-------------------- 858
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+L + +RD + F V DTG GI +E++ +F+ +
Sbjct: 859 --------------------ELGCEDVGERD-TQISLKFWVRDTGIGISREQQANLFDAF 897
Query: 591 VQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
Q GGTGLGL I + LV +MGG++ + + ++G+ F F + I
Sbjct: 898 SQADGSTTRQYGGTGLGLSISKHLVSMMGGNLSV--ESEPQQGSTFSFTLSFDI 949
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 16/149 (10%)
Query: 981 EIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRS 1040
+I++E E+ + Q PL+ IL+ +D+ + ++VA L+ G V +NG+ AL LV
Sbjct: 1093 KIKQEIAEQVEPQ-PLQSGLILLVEDNFINQQVASELLKSAGYDVVIADNGQIALDLVAK 1151
Query: 1041 GLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGE 1100
+D +LMD +MP+M+G A + +RE Q +PIIA+TAH
Sbjct: 1152 Q-------------EFDAVLMDIQMPVMDGLTAAKILRETYSTQQ--LPIIAMTAHAMSG 1196
Query: 1101 EADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
+ +K++ AGM+ H+ KP+ L E + Y
Sbjct: 1197 DKEKSLNAGMNAHITKPIVLTELFETLAY 1225
>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 992
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 142/319 (44%), Gaps = 72/319 (22%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A Q AER + K+ A SH+IR + G+ G+ L ++L+ R
Sbjct: 346 QAQQVAERANQAKAAFLATMSHEIRTPMNGVIGMTGLLL-----DTQLDPEQRHFATTIR 400
Query: 418 D----LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLD 471
D LL ++N ILD SK+EAGK+ L DF++ L+E +VD+ P A KG+E+ ++D
Sbjct: 401 DSAESLLTVINDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAKGIEIASMVD 460
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
P + V+GD +L+QIL NL NA+KFTS G IS+
Sbjct: 461 PD-----LPAWVRGDPGRLRQILMNLAGNAIKFTSHGGISIEV----------------- 498
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDEN----AMEFTFEVDDTGKGIPKEKRKTVF 587
RDE A F+V DTG GIP++ +F
Sbjct: 499 ----------------------------RDETSPDGAGRLRFDVRDTGIGIPQDAIGRLF 530
Query: 588 ENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV-FLAIRE 642
++QV GGTGLGL I + L +MGG I + G+ F F++ F +
Sbjct: 531 SMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGVESTPGA--GSLFWFSLPFQMVET 588
Query: 643 ASANDNNTQGEKELAGGDS 661
A + G + L DS
Sbjct: 589 APPQRPDLAGRRILVVDDS 607
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 14/134 (10%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
+P R +ILVA+D+ + ++VA LR LG +V+ +G A++ VRS
Sbjct: 739 RPARRLRILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEAVRS------------- 785
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
PYD +LMD +MP M+G +AT IR + +PI+A+TA+ + ++AGMD +
Sbjct: 786 RPYDLVLMDVQMPEMDGLQATAAIRALTGGAE-RVPIVAMTANAMRGDDRMCLDAGMDRY 844
Query: 1114 LGKPLNRDHLMEAI 1127
+ KP++R LME +
Sbjct: 845 ISKPIDRRKLMEVL 858
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 16/142 (11%)
Query: 988 ERSQAQKP-LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAAL-QLVRSGLNDQ 1045
E + Q+P L G++ILV DDS + R V E LR G V +C + E+AL +L R+
Sbjct: 587 ETAPPQRPDLAGRRILVVDDSPINRDVLERQLRGFGVIVASCADAESALAELGRAAATGT 646
Query: 1046 RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT 1105
P++ ++D MP + G + +IR E + + IIA + +S E+
Sbjct: 647 ---------PWEAAIIDARMPGVTGSDLIGRIRAEPVLAPMGL-IIASSQGLSPEDGSPK 696
Query: 1106 IEAGMDVHLGKPLNRDHLMEAI 1127
D + KPL R ++ +
Sbjct: 697 ----ADAFIHKPLRRQTILAVL 714
>gi|334119626|ref|ZP_08493711.1| ATP-binding region ATPase domain protein [Microcoleus vaginatus
FGP-2]
gi|333457788|gb|EGK86409.1| ATP-binding region ATPase domain protein [Microcoleus vaginatus
FGP-2]
Length = 2014
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 142/282 (50%), Gaps = 50/282 (17%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH++R L GI G ++ + G S+ + + ++ C LL L+N +LD
Sbjct: 1542 KSQFLANMSHELRTPLNGILGYTQILKRDTGLTSQQNSGINIIHQCGEHLLTLINDVLDL 1601
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAGKM+L +F + + L+ + ++ A +KG+ ++ +P + V+ D +
Sbjct: 1602 SKIEAGKMELYLTEFHLSDFLQGITEICQIRAQQKGISLIYEPLTPLP---TCVQADEKR 1658
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKP-----SAIGNPSLSSSRHGFLQSISCLFYK 544
L+QIL NLL NA+KFT +G +S + + S I NP QS++
Sbjct: 1659 LRQILINLLGNAIKFTEKGGVSFKVDRLETQQSLSSPIANP----------QSLTA---- 1704
Query: 545 NKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGT 600
+F F+V+DTG GI E+ +F + Q V + E GT
Sbjct: 1705 ---------------------KFIFQVEDTGIGIAPEELSKIFLPFEQASGSVSQIE-GT 1742
Query: 601 GLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GLGL I + LV +MGG++++ + + +G+ F F + L I E
Sbjct: 1743 GLGLPISRQLVEMMGGELKV--QSSLGKGSIFSFELELPITE 1782
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 964 LKTGNSSGEGSSRYKQTEI---EEEDGERSQAQKPLRG-----KKILVADDSMMLRRVAE 1015
LK +S G+GS + E+ E +G + + +K +RG +KILV DD R V
Sbjct: 1760 LKVQSSLGKGSIFSFELELPITENWEGYQKETEKIIRGFSGDRRKILVVDDRWQNRSVLV 1819
Query: 1016 INLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075
L +G + +G+ L ++ L P D I++D MP+M+G+EA R
Sbjct: 1820 NLLGPIGFELMEATDGQDCL--------NKALLFQP-----DCIIIDLVMPVMDGFEAVR 1866
Query: 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+IR+ V I +A I + + G + L KP+ + L+E +
Sbjct: 1867 RIRKIPPLKDV--IAIGTSASILSGDPHSIFQDGCNAFLLKPIRAEKLLECL 1916
>gi|440804169|gb|ELR25046.1| His Kinase A (phosphoacceptor) domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 1198
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 136/275 (49%), Gaps = 33/275 (12%)
Query: 351 ASLIKQMEAT--QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN 408
A L+ +M+ T ++ E+++ +K SH+IR + GI G L +E E
Sbjct: 261 AFLVSEMDITAKKKLEKENSDKDTFLGMVSHEIRTPINGILGFNSL-LLETSLTEEQRDF 319
Query: 409 LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
+ A LL +N +LD +K+ GK+++ + E++E V L P+A K +E+
Sbjct: 320 TTSIQRSAKLLLAHVNDLLDFAKIAEGKLRMETALVSLEEVVETVTKLARPLAEEKQLEL 379
Query: 469 --VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPS 526
+D VL GD +++ QI+ N LSNAVKFTS+G+I V+ V K A PS
Sbjct: 380 RCTVDKIIPRVLF-----GDPLRISQIIQNFLSNAVKFTSKGYIHVKVTVNKDPACAIPS 434
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTV 586
+ K RGD E+ A D N++ V DTG G+P + RK +
Sbjct: 435 ------------------DGKERGD-ESYLAGMDDNNSIFLKISVQDTGIGVPPDMRKAI 475
Query: 587 FENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGD 617
F +VQ + GGTGLGL I + + R+MGGD
Sbjct: 476 FGKFVQADSSISRRFGGTGLGLAICKRVARMMGGD 510
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 17/138 (12%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+++LV +D+ M +++ L G VE +G AL ++R + G H +
Sbjct: 1060 RRVLVVEDNAMNQKLIRNILVREGYDVEVAGDGLEALDVIR-------EKGLDH---FSL 1109
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEE-ADKTIEAGMDVHLGKP 1117
+LMD +MP MNGYE T+ IR IPI+ ++A SGE+ ++ + GM+ + KP
Sbjct: 1110 VLMDIQMPKMNGYECTQAIRALPDPTARTIPIVGVSA-TSGEDVVERCLSKGMNATIAKP 1168
Query: 1118 LN----RDHLME-AIKYL 1130
+ R HL + A +Y+
Sbjct: 1169 YSLQTIRSHLNQYAPRYV 1186
>gi|189423631|ref|YP_001950808.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189419890|gb|ACD94288.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 940
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 136/292 (46%), Gaps = 51/292 (17%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA ++AE S K+ AN SH+IR + GI + L + SE + L + + +
Sbjct: 553 EAKERAEAASRAKTEFLANMSHEIRTPMNGIISMAHLLRMTE-LTSEQQEYLASLQISSK 611
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
+LL L++ ILD SK+EAGK++L DF V +E+VV P +K +++ + SDG
Sbjct: 612 NLLALISDILDISKIEAGKLELEYADFSVRATIEEVVASQMPRITQKRLDICTELSDGLP 671
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ GD ++ KQIL NLL NA+KFT +G IS+ V KPSA
Sbjct: 672 ---EILLGDSLRFKQILLNLLGNAIKFTEQGGISI---VAKPSA---------------- 709
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
R +N + + DTG G+ E + VF + Q
Sbjct: 710 ----------------------RHDNQLIMRIMIADTGIGMSPEVLERVFSPFEQADSST 747
Query: 598 ----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
GGTGLGL I + LV LMGG I + G+ F + +REA A
Sbjct: 748 TRKYGGTGLGLSICRRLVELMGGRIWAASRPGS--GSTFFVELPFVVREAPA 797
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+A+D+ + R L G V ++G+ A + S +D IL
Sbjct: 818 VLLAEDNQINARSMSAILTRSGHRVVTVDDGQKAFEQWHSNR-------------WDCIL 864
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP+M+G EATR IR+ E+ + H P+IALTAH + + + G D ++ KP++
Sbjct: 865 MDVQMPVMDGVEATRLIRQAEQASGSHTPVIALTAHAMQGDREWLMAEGFDGYVAKPVDV 924
Query: 1121 DHLMEAIK 1128
+ L I+
Sbjct: 925 EQLFREIE 932
>gi|445494171|ref|ZP_21461215.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
gi|444790332|gb|ELX11879.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
Length = 1161
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 140/295 (47%), Gaps = 63/295 (21%)
Query: 356 QMEATQQA---ERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM 412
Q++ Q+A ER S KS AN SH++R L L +L E G+ E +R
Sbjct: 470 QLDLEQRAAELERASQYKSQFLANMSHELRTPLNSSLILAKLL-AENAAGNLHEEQVRFA 528
Query: 413 NV---CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
N NDLL L+N ILD SKVEAGK++L+ E ++E + LF P+A +K +
Sbjct: 529 NTIYSAGNDLLNLINDILDISKVEAGKLELVPEQLSPRHVVEGMAMLFEPLAQQKKLAFQ 588
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
+ +DG + + DR +L+QIL NLLSNA+KFTS G I++ A
Sbjct: 589 VQIADGLA---AHMTSDRQRLEQILKNLLSNALKFTSGGQITLAA--------------- 630
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
+A GD F V DTG GI E ++ +F N
Sbjct: 631 -----------------RADGD-------------GRIAFAVQDTGIGIRAEDQQAIF-N 659
Query: 590 YVQVKEGE-----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
Q +G GGTGLGL I + L +L+GG I +V + +G+CF + LA
Sbjct: 660 AFQQADGTTSRKYGGTGLGLSISRDLAQLLGGGIGLVSEPG--KGSCFTLTLPLA 712
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 18/137 (13%)
Query: 994 KPLRGKKILVADDSMMLRRVAEIN--LRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
+ G++IL+ DD + R + + L H G VE NG A+ + LN+ D+
Sbjct: 1032 RVFEGRRILLVDDDV--RNIFALTSALEHKGVLVEVGRNGFEAI----AKLNEVSDI--- 1082
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
D +LMD MP M+G EATR+IR++ + +PIIA+TA ++ ++ + AG
Sbjct: 1083 -----DLVLMDVMMPGMDGLEATRRIRQDAR--YARLPIIAITAKAMKDDQEQCLAAGAS 1135
Query: 1112 VHLGKPLNRDHLMEAIK 1128
+L KP++ L ++
Sbjct: 1136 DYLAKPIDLSRLYSLLR 1152
>gi|238483285|ref|XP_002372881.1| sensor histidine kinase/response regulator, putative [Aspergillus
flavus NRRL3357]
gi|220700931|gb|EED57269.1| sensor histidine kinase/response regulator, putative [Aspergillus
flavus NRRL3357]
Length = 2341
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 154/550 (28%), Positives = 236/550 (42%), Gaps = 129/550 (23%)
Query: 223 NDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYK 282
N + V G+P ++V D ++ Q I++ R ++ V NV +S
Sbjct: 1730 NGQRSYVDGLP---FSVVEDKMA-QQISHYVMRTREEVLVHNVLEDDRFSNVS------D 1779
Query: 283 AYCSQFEVAGVKSVYALA-MPRKGLVSLVHRTSK------RALILLIVMTVGVLISMLTF 335
AY ++ + KSV AL M + L+ ++H K R L++L ++ + IS+
Sbjct: 1780 AYQGRYPLG--KSVIALPIMQAEHLLGVIHIEGKPNSFTQRNLVVLHLLCNQIGISLSNA 1837
Query: 336 VFKSARAARKEMHLCASLIKQM--------EATQQA--------------ERKSMNKSLA 373
+ R RK AS+++ EA Q+A E + KS+
Sbjct: 1838 LL--FREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIF 1895
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVE 433
AN SHD+R + G+ GL EL E + + + VCA+ LL L+N ILD SK+E
Sbjct: 1896 LANISHDLRTPMNGVIGLSELLKA-TKLDKEQDEYVESIRVCADTLLTLINDILDFSKLE 1954
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD----PSDGSVLKFSKVKGDRVK 489
AGKM++ ++ E + +VV +G+E + D P D VL GD V+
Sbjct: 1955 AGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLEKVPPDLVVL------GDPVR 2008
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L QI NLLSN+ KFT +G ++VRA V +R G K R
Sbjct: 2009 LHQIFMNLLSNSYKFTPKGSVTVRARV-------------TREG-------------KGR 2042
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLG 605
LE V DTG GIP+E++ +F + Q GG+GLGL
Sbjct: 2043 IRLEC---------------SVSDTGIGIPEEQKSRLFRPFSQADSSTARSYGGSGLGLS 2087
Query: 606 IVQSLVR-LMGGDIEIVDKENGERGTCFRFNV-FLAIREASANDNNTQGEKELAGGDSAA 663
I ++++ ++GG I + D G GT F++ F +++ASA + L GD +
Sbjct: 2088 ICKAIIEDVLGGAIWL-DSTPGV-GTTVTFHLSFNKVKDASAKASG------LKKGDPSD 2139
Query: 664 GDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFME 723
T +PSP+ T PR I V + N ++IA KF+
Sbjct: 2140 KTT----------SPSPTARDLTMIPRDQI----------RVCIAEDNPINQKIAVKFVT 2179
Query: 724 NLGINVSAVS 733
L + A S
Sbjct: 2180 GLNLQCEAYS 2189
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 9/132 (6%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++ +A+D+ + +++A + L EA +G A++ +R+ + P+ +
Sbjct: 2160 RVCIAEDNPINQKIAVKFVTGLNLQCEAYSDGRQAVEALRARSQEGN--------PFHVV 2211
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP ++GY ATR+IR + N +IA+TA + +K +EAGM+ +L KP+
Sbjct: 2212 LMDVQMPTLDGYNATREIRRDPDPNVNEALVIAMTASAIEGDREKCLEAGMNNYLPKPVR 2271
Query: 1120 RDHLMEAI-KYL 1130
L E + +YL
Sbjct: 2272 STILSEMLDQYL 2283
>gi|407700485|ref|YP_006825272.1| two-component hybrid sensor and regulator [Alteromonas macleodii
str. 'Black Sea 11']
gi|407249632|gb|AFT78817.1| two-component hybrid sensor and regulator [Alteromonas macleodii
str. 'Black Sea 11']
Length = 707
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 149/311 (47%), Gaps = 60/311 (19%)
Query: 319 ILLIVMTVGVLISMLTFVF-KSARAARKEMHLCASLIKQMEAT-QQAERKSMNKSLAFAN 376
+ L + T+ +L F+F R ++ SL +Q E++ ++A R S KS ++
Sbjct: 166 VYLWLATLALLCIEAAFIFLPMERTVKRSFAKLTSLKEQAESSAEEARRASKAKSEFLSS 225
Query: 377 ASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGK 436
SH++R + G+ G+IEL ++ S + L++ LL L+N ILD SK+EAGK
Sbjct: 226 MSHELRTPMNGLFGMIELA-IDNPEKSNI--YLKKAKTAGRQLLVLINDILDISKIEAGK 282
Query: 437 MQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPSDGSVLKFSKVKGDRVKLKQIL 494
+++ + D+ ++L+DVV L RKG+E + DP V +KGD ++ QIL
Sbjct: 283 IKIEQAPVDLLQVLDDVVSLQRVYCQRKGLEFHYLKDPDLPHV-----IKGDITRMSQIL 337
Query: 495 SNLLSNAVKFTSEGHISVRAC-VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLE 553
NLLSNA+KFT +G ++++ K+P
Sbjct: 338 HNLLSNAIKFTEQGSVTLKVTYTKRP---------------------------------- 363
Query: 554 AVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQS 609
N +F+V DTG GI K +F+ + Q + GGTGLGL I +
Sbjct: 364 ---------NGNYLSFDVIDTGIGIESSKLDNIFKKFEQADQSTTREYGGTGLGLSIAKQ 414
Query: 610 LVRLMGGDIEI 620
L +LM GDI +
Sbjct: 415 LAKLMHGDINV 425
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 16/147 (10%)
Query: 982 IEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSG 1041
IE + R+ Q+ K+IL+A+D+ + + + L+ G +NG+ A+++ +
Sbjct: 573 IETKPISRTDIQEGNNKKRILLAEDNEINAEIVKTILQSEGYKFLHVKNGKDAVEVAKRH 632
Query: 1042 LNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEE 1101
+D ILMDC MP+M G EA+ +R +V PI+ALTA+ E+
Sbjct: 633 -------------RFDLILMDCNMPVMGGIEASMMLR---TTLEVDTPIVALTANAFAED 676
Query: 1102 ADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
++ + AGM L KPL++D L+ IK
Sbjct: 677 KEECLAAGMTDFLAKPLDKDTLLVCIK 703
>gi|117923777|ref|YP_864394.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117607533|gb|ABK42988.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1314
Score = 120 bits (301), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 145/308 (47%), Gaps = 54/308 (17%)
Query: 343 ARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPG 402
ARK+M A+L +A +AE S KS AN SH+IR + I GL L +A
Sbjct: 564 ARKDME--AAL---HDAKVEAESASRAKSRFLANMSHEIRTPMNAILGLSSLALEQAKEA 618
Query: 403 SELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAM 462
+ + L ++N + L+GLLN ILD SK+EA +M L + F + ELL+ + P
Sbjct: 619 RQRDF-LEKINHSGHFLMGLLNDILDLSKIEAERMDLESQPFRLDELLKQLAANVLPAMR 677
Query: 463 RKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI 522
K VEV + G+ L GD ++L Q+L NLLSNA+KFT EG + + +
Sbjct: 678 NKAVEVHFFIASGTPLALV---GDALRLGQVLHNLLSNAMKFTHEGEVRI-------TLT 727
Query: 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK 582
P + + H FTFEV D+G GIP E
Sbjct: 728 AEPYVQLTDHYL--------------------------------FTFEVKDSGIGIPAEV 755
Query: 583 RKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ +FE+++Q GG+GLGL I + L+ +M G I + + + +G+ F + L
Sbjct: 756 QPKLFESFIQADSSTTRQYGGSGLGLAICRRLMEMMHGKITL--QSSLGQGSTFTCRLPL 813
Query: 639 AIREASAN 646
I+ +
Sbjct: 814 QIQSCTVT 821
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 12/123 (9%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G +L+ +D + VA+ L +G V ++G AL L+ +Q + A
Sbjct: 975 LAGLHVLLVEDHDLNMEVAKAILERVGIRVITAQHGGEALALL-----EQTEGAA----- 1024
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D ILMD +MP+M+G+E TR IR + Q PIIALTA+ ++ ++ ++ GM+ H+
Sbjct: 1025 FDAILMDLQMPVMDGFETTRVIRSKTAWAQP--PIIALTANAFSQDRERALQVGMNDHIT 1082
Query: 1116 KPL 1118
KP+
Sbjct: 1083 KPI 1085
>gi|374301158|ref|YP_005052797.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 848
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 116/422 (27%), Positives = 189/422 (44%), Gaps = 68/422 (16%)
Query: 230 QGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFE 289
Q + T+++ + L+ + R + +NPV V +G + + E
Sbjct: 231 QQVQQEYKTLMDSASDLILVHDRDLRIRYVNPV--VESLAGQPPEHYLGQGIEVIIPERE 288
Query: 290 VAGVKSVYALAMPRKG--------LVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSAR 341
VAGV + + + + G L S+ H+ +A + + G + S+L V R
Sbjct: 289 VAGVFNSHLRQVLQSGKDSSISFQLDSVRHKRHMQARLTPVQDAAGSMGSVLAVVRDITR 348
Query: 342 AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
R E L +A ++AE + KS AN SH+IR L + GL E P
Sbjct: 349 FKRLEDRL-------RQAKREAEESNRAKSEFLANMSHEIRTPLNAVLGLAERLSFITEP 401
Query: 402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
E + +R + A+ LL +++ ILD SK+EAGK+ + E++F++ LLE VV + A
Sbjct: 402 -RERDEYVRMIKHSAHALLAIIDDILDLSKIEAGKLDVHEQEFELAALLEKVVSPYRYQA 460
Query: 462 MRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
KG+E+ + S G+ + + + D K Q+L+NL+SNA+KFT EG + +
Sbjct: 461 QEKGLELAV--SVGNAVP-AWMLADPDKFSQVLTNLVSNAIKFTEEGSVEI--------- 508
Query: 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
+V RD M V DTG GIP +
Sbjct: 509 --------------------------------SVTNDNRDSRDMGLLVCVHDTGLGIPWD 536
Query: 582 KRKTVFENYVQV----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
+ +F ++ Q+ + GGTGLGL I + LV ++GG I V+ G +G+ F F +
Sbjct: 537 MQARLFNSFSQLDSSYSKSFGGTGLGLAISKRLVEMLGGRI-WVESMPG-KGSSFSFTLP 594
Query: 638 LA 639
+A
Sbjct: 595 IA 596
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+A+D+ + + + +G +V+ ENG L+ +RS PYD IL
Sbjct: 622 LLLAEDNRINQFFLKDYFEAMGHSVDIAENGRLVLEKLRSK-------------PYDLIL 668
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP M+G EATR IR IPI+ALTA+ ++ K +EAGMD ++ KP+N
Sbjct: 669 MDIQMPHMDGLEATRIIRSSNDEPWADIPIVALTAYALSQDRSKAMEAGMDAYVLKPINF 728
Query: 1121 DHLMEAIKY 1129
+ L I +
Sbjct: 729 EELEREIVH 737
>gi|256828852|ref|YP_003157580.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256578028|gb|ACU89164.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 862
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 144/290 (49%), Gaps = 59/290 (20%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ-MNVCAN 417
A +QAE + KS AN SH+IR L G+ G+++L + +L+ Q ++V N
Sbjct: 469 AKKQAEVANQAKSEFLANMSHEIRTPLNGLLGMLQLVRM-----GDLDAERSQYLDVAMN 523
Query: 418 D---LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
LL ++N ILD SK+E+GK +L DF+V L++ V + F A KGVE++++ +D
Sbjct: 524 SGEGLLAVINDILDLSKIESGKFELAPVDFNVHALVQSVGETFRFPARSKGVELIVE-TD 582
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
+ F + D+V+++QIL NL+ NAVKFT G I R + P GN
Sbjct: 583 ADMPVF--IHADQVRIRQILYNLVGNAVKFTLAGEI--RISLSMPFQTGN---------- 628
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV- 593
RG +E V DTG GIP +++ +FE +VQ
Sbjct: 629 --------------RGQME---------------IRVADTGVGIPLDQQAALFEPFVQAS 659
Query: 594 ---KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
K GTGLGL IV+ +V MGG + + D GE GT +V + I
Sbjct: 660 TAPKTRGSGTGLGLSIVKRIVGFMGGRVRL-DSTPGE-GTTLTVSVKVGI 707
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 979 QTEIEEEDGERSQAQKPLRGK--KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ 1036
Q EE Q P+ G +ILVA+D+ + + + L LG T +G+ AL+
Sbjct: 710 QAPTEELPCAFEQTCCPVAGSGLRILVAEDNSVNQLMIVKLLEKLGHTAVCAHDGQEALE 769
Query: 1037 LVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTA 1095
L+ + PYD +LMD +MP ++G EATR IR +PIIALTA
Sbjct: 770 LL-------------SLAPYDCVLMDIQMPGLDGTEATRMIRRRALSGIDPDVPIIALTA 816
Query: 1096 HISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ + ++ + GM +L KP++ L A+
Sbjct: 817 YALSGDRERFLAMGMSGYLSKPVSMAGLSAAL 848
>gi|83765603|dbj|BAE55746.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 2341
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 154/550 (28%), Positives = 236/550 (42%), Gaps = 129/550 (23%)
Query: 223 NDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYK 282
N + V G+P ++V D ++ Q I++ R ++ V NV +S
Sbjct: 1730 NGQRSYVDGLP---FSVVEDKMA-QQISHYVMRTREEVLVHNVLEDDRFSNVS------D 1779
Query: 283 AYCSQFEVAGVKSVYALA-MPRKGLVSLVHRTSK------RALILLIVMTVGVLISMLTF 335
AY ++ + KSV AL M + L+ ++H K R L++L ++ + IS+
Sbjct: 1780 AYQGRYPLG--KSVIALPIMQAEHLLGVIHIEGKPNSFTQRNLVVLHLLCNQIGISLSNA 1837
Query: 336 VFKSARAARKEMHLCASLIKQM--------EATQQA--------------ERKSMNKSLA 373
+ R RK AS+++ EA Q+A E + KS+
Sbjct: 1838 LL--FREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIF 1895
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVE 433
AN SHD+R + G+ GL EL E + + + VCA+ LL L+N ILD SK+E
Sbjct: 1896 LANISHDLRTPMNGVIGLSELLKA-TKLDKEQDEYVESIRVCADTLLTLINDILDFSKLE 1954
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD----PSDGSVLKFSKVKGDRVK 489
AGKM++ ++ E + +VV +G+E + D P D VL GD V+
Sbjct: 1955 AGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLEKVPPDLVVL------GDPVR 2008
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L QI NLLSN+ KFT +G ++VRA V +R G K R
Sbjct: 2009 LHQIFMNLLSNSYKFTPKGSVTVRARV-------------TREG-------------KGR 2042
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLG 605
LE V DTG GIP+E++ +F + Q GG+GLGL
Sbjct: 2043 IRLEC---------------SVSDTGIGIPEEQKSRLFRPFSQADSSTARSYGGSGLGLS 2087
Query: 606 IVQSLVR-LMGGDIEIVDKENGERGTCFRFNV-FLAIREASANDNNTQGEKELAGGDSAA 663
I ++++ ++GG I + D G GT F++ F +++ASA + L GD +
Sbjct: 2088 ICKAIIEDVLGGAIWL-DSTPGV-GTTVTFHLSFNKVKDASAKASG------LKKGDPSD 2139
Query: 664 GDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFME 723
T +PSP+ T PR I V + N ++IA KF+
Sbjct: 2140 KTT----------SPSPTARDLTMIPRDQI----------RVCIAEDNPINQKIAVKFVT 2179
Query: 724 NLGINVSAVS 733
L + A S
Sbjct: 2180 GLNLQCEAYS 2189
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 9/132 (6%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++ +A+D+ + +++A + L EA +G A++ +R+ + P+ +
Sbjct: 2160 RVCIAEDNPINQKIAVKFVTGLNLQCEAYSDGRQAVEALRARSQEGN--------PFHVV 2211
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP ++GY ATR+IR + N +IA+TA + +K +EAGM+ +L KP+
Sbjct: 2212 LMDVQMPTLDGYNATREIRRDPDPNVNEALVIAMTASAIEGDREKCLEAGMNNYLPKPVR 2271
Query: 1120 RDHLMEAI-KYL 1130
L E + +YL
Sbjct: 2272 STILSEMLDQYL 2283
>gi|359459602|ref|ZP_09248165.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris sp. CCMEE 5410]
Length = 1582
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 163/342 (47%), Gaps = 47/342 (13%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNV 414
+A + A+ ++ KS A SH+IR A+ G+TGL+ ++ +ET +
Sbjct: 1036 QARKDADAANVAKSEFLATMSHEIRTPMNAVIGMTGLLLNTTLDNQQRDFVET----IRS 1091
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDP 472
+ LL L+N ILD SK+EAGK++ E+ F + +E+ + L P A+ K +E+ + DP
Sbjct: 1092 SGDALLTLINDILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELAYLFDP 1151
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
S + + GD +L+QIL NLL+N VKFT +G + + + I P + R
Sbjct: 1152 STP-----NHIVGDVTRLRQILVNLLTNGVKFTEQGEVVIYVQDITDTDIAQPETTPQRK 1206
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
F +N++ FEV D+G GIP ++ +F+++ Q
Sbjct: 1207 NFTD------IQNQRRL-----------------VQFEVRDSGIGIPADRMDRLFKSFSQ 1243
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
V GGTGLGL I +SL ++MGG I + K G+ F F + A+ A +N
Sbjct: 1244 VDASTTKKYGGTGLGLAICRSLSQMMGGRIWVESKAG--VGSSFFFTI--AVPVAPEGEN 1299
Query: 649 NTQGEKELAGGDS--AAGDTQLQHMNLTVKAPSPSLSIRTNS 688
++L G D LT++A + + I+T S
Sbjct: 1300 TLDQSQQLLDGKQLLVVDDNPTNRRILTLQAQTWGMGIQTVS 1341
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 16/130 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D ++ ++VA + L+ LG + NGE L+ A H YD +
Sbjct: 1455 QILLAEDIVVNQKVALLILKQLGYRADVANNGEEVLE-------------ALHRQSYDVV 1501
Query: 1060 LMDCEMPIMNGYEATRKIREE-EKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMD +MP M+G A R I+E+ ++ +Q + IIALTA+ + + + AGM ++ KP+
Sbjct: 1502 LMDVQMPEMDGLTAARHIKEQWQEEDQPY--IIALTANAMQGDREMCMAAGMHDYVSKPI 1559
Query: 1119 NRDHLMEAIK 1128
D L A +
Sbjct: 1560 RVDELKSAFE 1569
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 17/163 (10%)
Query: 968 NSSGEGSSRYKQTEIE-EEDGERS--QAQKPLRGKKILVADDSMMLRRVAEINLRHLGAT 1024
+ +G GSS + + +GE + Q+Q+ L GK++LV DD+ RR+ + + G
Sbjct: 1277 SKAGVGSSFFFTIAVPVAPEGENTLDQSQQLLDGKQLLVVDDNPTNRRILTLQAQTWGMG 1336
Query: 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN 1084
++ G AL L+ S D + +D ++D +MP M+G E R IR+ ++R
Sbjct: 1337 IQTVSGGAEALALLES---DSK---------FDLAILDMQMPEMDGVELARHIRQLDQRK 1384
Query: 1085 QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
H+P++ L++ E E L KP+ + +L +A+
Sbjct: 1385 --HLPLVMLSSLGQDEIIKHKQEIQFSAILNKPIQQSYLYDAL 1425
>gi|317139763|ref|XP_001817748.2| sensor histidine kinase/response regulator [Aspergillus oryzae RIB40]
Length = 2326
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 154/550 (28%), Positives = 236/550 (42%), Gaps = 129/550 (23%)
Query: 223 NDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYK 282
N + V G+P ++V D ++ Q I++ R ++ V NV +S
Sbjct: 1715 NGQRSYVDGLP---FSVVEDKMA-QQISHYVMRTREEVLVHNVLEDDRFSNVS------D 1764
Query: 283 AYCSQFEVAGVKSVYALA-MPRKGLVSLVHRTSK------RALILLIVMTVGVLISMLTF 335
AY ++ + KSV AL M + L+ ++H K R L++L ++ + IS+
Sbjct: 1765 AYQGRYPLG--KSVIALPIMQAEHLLGVIHIEGKPNSFTQRNLVVLHLLCNQIGISLSNA 1822
Query: 336 VFKSARAARKEMHLCASLIKQM--------EATQQA--------------ERKSMNKSLA 373
+ R RK AS+++ EA Q+A E + KS+
Sbjct: 1823 LL--FREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIF 1880
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVE 433
AN SHD+R + G+ GL EL E + + + VCA+ LL L+N ILD SK+E
Sbjct: 1881 LANISHDLRTPMNGVIGLSELLKA-TKLDKEQDEYVESIRVCADTLLTLINDILDFSKLE 1939
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD----PSDGSVLKFSKVKGDRVK 489
AGKM++ ++ E + +VV +G+E + D P D VL GD V+
Sbjct: 1940 AGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLEKVPPDLVVL------GDPVR 1993
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L QI NLLSN+ KFT +G ++VRA V +R G K R
Sbjct: 1994 LHQIFMNLLSNSYKFTPKGSVTVRARV-------------TREG-------------KGR 2027
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLG 605
LE V DTG GIP+E++ +F + Q GG+GLGL
Sbjct: 2028 IRLEC---------------SVSDTGIGIPEEQKSRLFRPFSQADSSTARSYGGSGLGLS 2072
Query: 606 IVQSLVR-LMGGDIEIVDKENGERGTCFRFNV-FLAIREASANDNNTQGEKELAGGDSAA 663
I ++++ ++GG I + D G GT F++ F +++ASA + L GD +
Sbjct: 2073 ICKAIIEDVLGGAIWL-DSTPGV-GTTVTFHLSFNKVKDASAKASG------LKKGDPSD 2124
Query: 664 GDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFME 723
T +PSP+ T PR I V + N ++IA KF+
Sbjct: 2125 KTT----------SPSPTARDLTMIPRDQI----------RVCIAEDNPINQKIAVKFVT 2164
Query: 724 NLGINVSAVS 733
L + A S
Sbjct: 2165 GLNLQCEAYS 2174
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 9/132 (6%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++ +A+D+ + +++A + L EA +G A++ +R+ + P+ +
Sbjct: 2145 RVCIAEDNPINQKIAVKFVTGLNLQCEAYSDGRQAVEALRARSQEGN--------PFHVV 2196
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP ++GY ATR+IR + N +IA+TA + +K +EAGM+ +L KP+
Sbjct: 2197 LMDVQMPTLDGYNATREIRRDPDPNVNEALVIAMTASAIEGDREKCLEAGMNNYLPKPVR 2256
Query: 1120 RDHLMEAI-KYL 1130
L E + +YL
Sbjct: 2257 STILSEMLDQYL 2268
>gi|300867481|ref|ZP_07112132.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300334475|emb|CBN57300.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1174
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 156/320 (48%), Gaps = 49/320 (15%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDI 381
I + + + I T +F+ A+ E L +++ A A+ ++ KS ++ SH++
Sbjct: 653 IAVQLAIAIQQCT-LFEQAKTEIAERKLAEQALRK--AVIAADAANLAKSEFLSSMSHEL 709
Query: 382 RAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE 441
R L I G ++ ++ +E + +L+ +N LL L+N IL+ SK+EAGK QL E
Sbjct: 710 RTPLNAILGFSQVMVRDSSLKNEHQQHLQIINRAGEHLLSLINDILEMSKIEAGKSQLNE 769
Query: 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNA 501
F++ LL + ++F A K ++++ D S V +F VKGD KL+Q+L NL+ NA
Sbjct: 770 ASFNLIRLLGTLEEIFRLKAESKKLQLIFDLSK-EVPQF--VKGDEGKLRQVLINLVGNA 826
Query: 502 VKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRD 561
+KFT G +++R +K + I +
Sbjct: 827 IKFTETGSVTLRVKLKSENEISSL------------------------------------ 850
Query: 562 ENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG---GTGLGLGIVQSLVRLMGGDI 618
A+ FE++DTG GI E+ +F + Q K G+ GTGLGL I + V++MGGDI
Sbjct: 851 --ALPLQFEIEDTGPGIAAEEMNKLFAPFEQTKTGQKSQQGTGLGLPISRKFVQMMGGDI 908
Query: 619 EIVDKENGERGTCFRFNVFL 638
+ G+ F F++ L
Sbjct: 909 SVTSTVG--LGSKFAFDIQL 926
Score = 57.8 bits (138), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD V + L LG V NGE A+ + PH+ I
Sbjct: 954 RILVVDDRADNCLVIDRLLSPLGLLVREARNGEEAIAIWADW--------QPHL-----I 1000
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD +MP+MNGYE T+KI+ Q I+ALTA EE + AG D + KP
Sbjct: 1001 WMDMQMPVMNGYETTKKIKAHPLGKQT--IIVALTASAFEEERKTILAAGCDDFMRKPFQ 1058
Query: 1120 RDHLMEAIKYL 1130
D L ++ L
Sbjct: 1059 VDILFSKMEEL 1069
>gi|212554940|gb|ACJ27394.1| PAS domain protein [Shewanella piezotolerans WP3]
Length = 1203
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 145/296 (48%), Gaps = 53/296 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
+ +EA Q AE ++ KS AN SH+IR + I G+++L + + L + +
Sbjct: 675 VAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTLQQKDYLEKAD 733
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DP 472
A+ LL ++N ILD SK+EAGK++L F + ++L+ +DL A KGVE++L P
Sbjct: 734 FSAHSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAP 793
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
++ ++GD ++L Q+L N+LSNAVKFT G I
Sbjct: 794 VTAGLI----LEGDPLRLGQVLINMLSNAVKFTKSGEI---------------------- 827
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+L + +RD + + F V DTG GI KE++ +F+ + Q
Sbjct: 828 ------------------ELGCEDVGERD-HRITLKFWVRDTGIGISKEQQAILFDAFAQ 868
Query: 593 ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + LV +MGG ++ V+ E G G+ F F + I E +
Sbjct: 869 ADGSTTRKYGGTGLGLSISKHLVSMMGGTMQ-VESEMG-VGSTFSFTISFEIAEEA 922
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 76/129 (58%), Gaps = 15/129 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+ +D+ + ++VA L+ G TV+ ENG+ AL ++ S YD +L
Sbjct: 1081 ILLVEDNFINQQVATELLKSAGYTVDVAENGQIALDMIDSA-------------NYDAVL 1127
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP+M+G AT+++R+ + + +P+IA+TAH + +K++ AGM+ H+ KP+
Sbjct: 1128 MDIQMPVMDGLTATKELRK--RYSATELPVIAMTAHAMSGDREKSLSAGMNAHITKPIVL 1185
Query: 1121 DHLMEAIKY 1129
+ L E + +
Sbjct: 1186 NELFETLSH 1194
>gi|391864850|gb|EIT74144.1| sensory transduction histidine kinase [Aspergillus oryzae 3.042]
Length = 2333
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 154/550 (28%), Positives = 236/550 (42%), Gaps = 129/550 (23%)
Query: 223 NDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYK 282
N + V G+P ++V D ++ Q I++ R ++ V NV +S
Sbjct: 1722 NGQRSYVDGLP---FSVVEDKMA-QQISHYVMRTREEVLVHNVLEDDRFSNVS------D 1771
Query: 283 AYCSQFEVAGVKSVYALA-MPRKGLVSLVHRTSK------RALILLIVMTVGVLISMLTF 335
AY ++ + KSV AL M + L+ ++H K R L++L ++ + IS+
Sbjct: 1772 AYQGRYPLG--KSVIALPIMQAEHLLGVIHIEGKPNSFTQRNLVVLHLLCNQIGISLSNA 1829
Query: 336 VFKSARAARKEMHLCASLIKQM--------EATQQA--------------ERKSMNKSLA 373
+ R RK AS+++ EA Q+A E + KS+
Sbjct: 1830 LL--FREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIF 1887
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVE 433
AN SHD+R + G+ GL EL E + + + VCA+ LL L+N ILD SK+E
Sbjct: 1888 LANISHDLRTPMNGVIGLSELLKA-TKLDKEQDEYVESIRVCADTLLTLINDILDFSKLE 1946
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD----PSDGSVLKFSKVKGDRVK 489
AGKM++ ++ E + +VV +G+E + D P D VL GD V+
Sbjct: 1947 AGKMKISTVPLNIKETISEVVRALRYTHRDRGLETIEDLEKVPPDLVVL------GDPVR 2000
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L QI NLLSN+ KFT +G ++VRA V +R G K R
Sbjct: 2001 LHQIFMNLLSNSYKFTPKGSVTVRARV-------------TREG-------------KGR 2034
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLG 605
LE V DTG GIP+E++ +F + Q GG+GLGL
Sbjct: 2035 IRLEC---------------SVSDTGIGIPEEQKSRLFRPFSQADSSTARSYGGSGLGLS 2079
Query: 606 IVQSLVR-LMGGDIEIVDKENGERGTCFRFNV-FLAIREASANDNNTQGEKELAGGDSAA 663
I ++++ ++GG I + D G GT F++ F +++ASA + L GD +
Sbjct: 2080 ICKAIIEDVLGGAIWL-DSTPGV-GTTVTFHLSFNKVKDASAKASG------LKKGDPSD 2131
Query: 664 GDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFME 723
T +PSP+ T PR I V + N ++IA KF+
Sbjct: 2132 KTT----------SPSPTARDLTMIPRDQI----------RVCIAEDNPINQKIAVKFVT 2171
Query: 724 NLGINVSAVS 733
L + A S
Sbjct: 2172 GLNLQCEAYS 2181
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 9/132 (6%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++ +A+D+ + +++A + L EA +G A++ +R+ + P+ +
Sbjct: 2152 RVCIAEDNPINQKIAVKFVTGLNLQCEAYSDGRQAVEALRARSQEGN--------PFHVV 2203
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP ++GY ATR+IR + N +IA+TA + +K +EAGM+ +L KP+
Sbjct: 2204 LMDVQMPTLDGYNATREIRRDPDPNVNEALVIAMTASAIEGDREKCLEAGMNNYLPKPVR 2263
Query: 1120 RDHLMEAI-KYL 1130
L E + +YL
Sbjct: 2264 STILSEMLDQYL 2275
>gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
12260]
gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
12260]
Length = 1513
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 137/292 (46%), Gaps = 71/292 (24%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ--------MN 413
QA++ + KS AN SH+IR + GI G+ L L+T+L +
Sbjct: 854 QADQANRAKSDFLANMSHEIRTPMNGILGMAALL---------LDTDLTPEQRHFGEIVQ 904
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LD 471
A +LLGLLN ILD SK+EAG++ L E DFD+ L +DV A KG+E + ++
Sbjct: 905 ASAENLLGLLNDILDLSKIEAGRLALEEVDFDLRSLFDDVGAALAAQAQAKGLEFLGSVE 964
Query: 472 PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSR 531
P S L +GD +L+Q+L+NLL NAVKFT G + VRA S S R
Sbjct: 965 PDVPSAL-----RGDPGRLRQVLTNLLGNAVKFTHRGEVVVRAR--------RVSESPER 1011
Query: 532 HGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV 591
++ F V DTG GIP +K +F+ +
Sbjct: 1012 ---------------------------------VQVRFSVRDTGIGIPADKVDLLFQKFT 1038
Query: 592 QVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
Q GGTGLGL I ++LV LMGG+I + +E G+ F F + A
Sbjct: 1039 QADASTTRHYGGTGLGLAISKNLVELMGGEIGVHSREG--VGSEFWFTLDFA 1088
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 14/127 (11%)
Query: 1002 LVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILM 1061
L+ +D+ + R+VA LR LG + E+G AL+ + G YD +LM
Sbjct: 1252 LLVEDNEVNRQVALGMLRRLGLRADVAEDGLGALRALEEG-------------DYDLVLM 1298
Query: 1062 DCEMPIMNGYEATRKIREEEKRNQ-VHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D +MP M+G E TR IR R + +PI+A+TAH + ++ +EAGMD L KPL+
Sbjct: 1299 DVQMPGMDGVETTRAIRAPGSRARNPRVPIVAMTAHAMQGDRERCLEAGMDGFLSKPLDF 1358
Query: 1121 DHLMEAI 1127
L E++
Sbjct: 1359 STLAESL 1365
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 986 DGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQ 1045
+G R + L+G + LV DD+ R + L G VEA +G +AL+++R+
Sbjct: 1094 EGARGGDSRDLKGVRALVVDDNATNREILLARLTGWGMAVEAVADGPSALEVLRA----- 1148
Query: 1046 RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT 1105
+ +P++ ++D +MP M+G R +RE+ K + ++ +T+ +A +
Sbjct: 1149 ---ASARGVPFEMAVLDMQMPGMDGETLGRILREDPKLGGLK--LVMMTSMGQRGDAHRM 1203
Query: 1106 IEAGMDVHLGKPLNRDHLMEAI 1127
E G +L KPL L +++
Sbjct: 1204 EEIGFSAYLTKPLRHQDLRDSL 1225
>gi|302760541|ref|XP_002963693.1| hypothetical protein SELMODRAFT_451444 [Selaginella moellendorffii]
gi|300168961|gb|EFJ35564.1| hypothetical protein SELMODRAFT_451444 [Selaginella moellendorffii]
Length = 825
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 144/293 (49%), Gaps = 29/293 (9%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA +AE + +S A SH+IR L G+ G+ + ++ P + E L +
Sbjct: 260 EARDKAESAAKARSEFLAVMSHEIRTPLNGVIGMASV-LLDTDPTPDQEECLETIRTSGE 318
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK++AGK+ + ++ L+EDV + KGVE+V+
Sbjct: 319 CLLSIINDILDFSKIDAGKLTIAPVPCNLRSLVEDVGSMLALRVEPKGVELVVHYDS--- 375
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
F V D ++L+Q+L NL+ N+ KFT GHI V + L S L++
Sbjct: 376 -PFFAVSVDTIRLRQVLINLIGNSCKFTHAGHILVNVSL----------LCKSCQKQLKA 424
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAME------FTFEVDDTGKGIPKEKRKTVFENYV 591
F++ + D+ + + D +A F F + D+G GI ++K +FE +
Sbjct: 425 TD--FWECRSCSKDVNSFKGRELDSDAKHVKPVEYFKFSISDSGIGIAEDKLGLLFEKFS 482
Query: 592 QVKE----GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
Q + GGTGLGL + +SLV LMGG+I + +E G+ F F++ L I
Sbjct: 483 QCDQLTSSMYGGTGLGLAVSKSLVDLMGGEIVVESREG--VGSTFSFSIPLEI 533
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 20/145 (13%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
G+++Q + R K+LV +D+ + + VA L +LG TV+ NG+ A+ +V +
Sbjct: 694 GDKAQTR---RHPKVLVVEDNKVNQMVAIRLLNNLGCTVDVACNGQEAVSIVDKPVE--- 747
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI 1106
YD I MDC MP+++G++A+R IR ++K PI+ALTA E +K +
Sbjct: 748 ---------YDLIFMDCHMPVLDGFQASRLIRSKQKLT----PIVALTAATMESELEKCL 794
Query: 1107 EAGMDVHLGKPLNRDHLMEAI-KYL 1130
E GMD ++ KP + L + K+L
Sbjct: 795 ECGMDDYVRKPCTKQELQRVLHKWL 819
>gi|116109372|gb|ABJ74170.1| histidine kinase 1 [Lupinus albus]
Length = 1043
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 155/306 (50%), Gaps = 20/306 (6%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E ++AE + KS A SH+IR + G+ G++ + ++ + +R V
Sbjct: 447 ELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHM-LMDTDLDVTQQEFVRTAQVSGK 505
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
L+ L+N +LD +K+EAGK++L FD+ +L+DV+ LF + KGVE+ + SD
Sbjct: 506 ALMSLINEVLDQAKIEAGKLELEAVLFDLRAILDDVLSLFSEKSQEKGVELGVYVSDQVP 565
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRAC----VKKPSAIGNPSLS-SSRH 532
+ GD + +QI +NL+ N++KFT +GH+ V V + + S S ++
Sbjct: 566 ---ELLIGDPGRFRQITTNLMGNSIKFTDKGHVFVTVHLVEEVVYSTKVDKESTSENTLS 622
Query: 533 GFLQSISCLFYKNKKA---RGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
GF + S ++ KA G L + +++ D + V+DTG+GIP E + +F
Sbjct: 623 GFPVADSRRSWEGFKAFSQEGPLGSFSSSSGD--LINLIVSVEDTGEGIPLEAQPHIFTP 680
Query: 590 YVQV----KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
++QV GGTG+GL I + LV LM G+I V + G+ F F S+
Sbjct: 681 FMQVGPSISRKHGGTGIGLSISKCLVHLMSGEIGFVSIP--KIGSTFTFTAIFTNGLPSS 738
Query: 646 NDNNTQ 651
N+ TQ
Sbjct: 739 NECKTQ 744
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 25/141 (17%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LRG++IL+ DD+ + R VA L+ GA V +G+ A+ L PH
Sbjct: 904 LRGRRILIVDDNSVNRMVAAAALKKYGAEVVCVSSGKEAIS----------SLKPPH--Q 951
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEE-------------KRNQVHIPIIALTAHISGEEA 1102
+D MD +MP ++G+EATR IR+ E + H+PI+ +TA +
Sbjct: 952 FDACFMDIQMPEIDGFEATRTIRDMELSVNSEMSVYDIDNVSNWHVPILTMTADVIQATQ 1011
Query: 1103 DKTIEAGMDVHLGKPLNRDHL 1123
+ + GMD ++ KP + L
Sbjct: 1012 EACLRCGMDGYVSKPFEAEQL 1032
>gi|397689593|ref|YP_006526847.1| GAF sensor hybrid histidine kinase [Melioribacter roseus P3M]
gi|395811085|gb|AFN73834.1| GAF sensor hybrid histidine kinase [Melioribacter roseus P3M]
Length = 1151
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 160/324 (49%), Gaps = 72/324 (22%)
Query: 337 FKSARAARKEMHLCASLIKQMEATQQAERKSMN----KSLAFANASHDIRAALAGITGLI 392
++S K++HL L ++ E ++ +K++ KS AN SH++R L I GL
Sbjct: 484 YQSQNKELKQLHL--ELKQKAEELEKERKKAVELSDIKSRFLANMSHELRTPLISILGLT 541
Query: 393 ELCYVEA---GPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449
EL E G +L+ LR LL L+N+ILD SKV+AGK++L +E F + EL
Sbjct: 542 ELMLKEIHSEKSGKKLKVILRN----GRKLLRLINNILDFSKVDAGKLELNKERFLLSEL 597
Query: 450 LEDVVDLFHPVAMRKGVEVVLD-PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG 508
++D++ +A K ++ ++D P + + V+ DR KL+QILSNLL NA KFT +G
Sbjct: 598 IDDILIEVEQIADEKNLKFIVDFPENVDFI----VETDRSKLEQILSNLLVNAFKFTEKG 653
Query: 509 HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT 568
++ ++ Q DE ++
Sbjct: 654 YVKLK-------------------------------------------VEQSDEASL--Y 668
Query: 569 FEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKE 624
FEV+DTG GI +E R +FE + ++ G GG GLGL I + + LM +IE+ + +
Sbjct: 669 FEVEDTGIGISEENRGRIFEEFGRIDTGASRKYGGAGLGLSIAKHFLELMDSEIEL-ESK 727
Query: 625 NGERGTCFRF---NVFLAIREASA 645
GE G+ F F +V + I E+ A
Sbjct: 728 TGE-GSRFSFVLKDVIIDIIESEA 750
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 19/148 (12%)
Query: 974 SSRYKQTEIEEEDGERSQAQKPLRGKK---ILVADDSMMLRRVAEINLRHLGATVEACEN 1030
+ + K+ IE +D E++ Q P++ K ++V DD L + E ++ LG N
Sbjct: 1001 NEQLKEKLIETDDAEKAVDQIPVKEIKPTVLIVDDDQDALFTIGEF-VKQLGCNAIFAHN 1059
Query: 1031 GEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPI 1090
G L L H+ P D I +D MP+M+G+E +KIR E + IP+
Sbjct: 1060 GMECL------------LTLNHVEP-DLIFLDIMMPMMDGFETIKKIRAESR--TASIPV 1104
Query: 1091 IALTAHISGEEADKTIEAGMDVHLGKPL 1118
IALTA+ E + + G D + KP+
Sbjct: 1105 IALTAYAMLENKEVIEKNGFDDLITKPV 1132
>gi|158334723|ref|YP_001515895.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158304964|gb|ABW26581.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 883
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 40/303 (13%)
Query: 351 ASLIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
A L+KQ+ E+ +AE + KS AN SH++R L I G +L + E + L
Sbjct: 365 AELLKQVRESRDKAEAANKAKSAFLANMSHELRTPLNAILGFSQLLARDENLTLEQKQTL 424
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
+N + LL L+N +LD SK+EAGK+ L ++ D+ LL+ + ++F A KG +V
Sbjct: 425 NTINRSGSHLLSLINDVLDMSKIEAGKIALNPKNCDLLPLLDSLQEMFALKAKSKG--LV 482
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
L+ S L S ++ D +L+Q+L NLL+NA+KFT G +++R
Sbjct: 483 LNIQKSSQLP-SHIRVDESRLRQVLINLLTNALKFTDVGSVTLRV--------------- 526
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
F Q + F N++ + ++ F+V+DTG GI + +FE
Sbjct: 527 ----FTQPLPAPFSLNQETL------------QPSLSLCFDVEDTGIGIANNELDHIFEA 570
Query: 590 YVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
++Q G GTGLGL I + LM GDI+I + +GT + + I E A
Sbjct: 571 FIQTSSGRRSHEGTGLGLAICHHFIHLMEGDIQI--QSQLGQGTTVSVQIPVLIPEVKAV 628
Query: 647 DNN 649
+++
Sbjct: 629 EDS 631
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 34/153 (22%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q P+R +L+ +D+ R++ + + LG V+ +NG+AA++ ++ PH
Sbjct: 643 QAPIR---MLIVEDNPENRQILKRLMTELGFEVQTVDNGQAAVECWQTW--------RPH 691
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQ----------VHIP--------IIALT 1094
+ I MD ++PI+NGYEAT+ IR E ++Q V I IIA++
Sbjct: 692 M-----IWMDWQLPILNGYEATKAIRSLEAQDQDAGDLASQNAVEITDRLPERTIIIAVS 746
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
A + + + + G D L KP L E +
Sbjct: 747 ASVFEDTQAECEDVGCDDFLCKPYQPSMLYELL 779
>gi|256829206|ref|YP_003157934.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256578382|gb|ACU89518.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 1050
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 142/287 (49%), Gaps = 59/287 (20%)
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQMNVCANDLLGLLNS 425
S+ KS AN SH+IR L GI G+++L +++ +E + N +R +V L LL+
Sbjct: 653 SVAKSAFLANMSHEIRTPLNGIMGMLQL--LDSSSLTEEQKNYVRMADVSGRRLTALLSD 710
Query: 426 ILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKG 485
ILD S++EAGK+ L E FD+ E+ ++ LF A KG+ +V++ + ++ G
Sbjct: 711 ILDISRIEAGKLLLTERAFDLEEMRTSIITLFSIPAQEKGISLVVELAPDLP---PRLIG 767
Query: 486 DRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKN 545
D ++L+QIL NL+ NAVKFT+EG + + SL SS+
Sbjct: 768 DDLRLRQILFNLVGNAVKFTNEGFVQTQI-----------SLLSSQA------------- 803
Query: 546 KKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG------- 598
+N F V D+G+GI +FE +VQ GEG
Sbjct: 804 ----------------DNGCRLLFSVQDSGEGISDTLLPAIFEPFVQ---GEGSYVRYHQ 844
Query: 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
G GLGL IV L+R+MGG + I ++ + GT F++ I EA A
Sbjct: 845 GAGLGLAIVGRLMRMMGGSLAI---DSSDSGTTICFSLNFRIPEAPA 888
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 14/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+A+D + A L G V NG A++L+R +D I
Sbjct: 906 RILLAEDDPVNMFAARRILGKAGHAVTPATNGGQAVELLRES-------------EFDLI 952
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQ-VHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMD +MP+M+G EAT IR + + IPI+A+TA+ + +K + MD ++ KPL
Sbjct: 953 LMDVQMPVMDGLEATAMIRGDATLGEKSRIPIVAMTAYAMSGDREKFLAGSMDGYIAKPL 1012
Query: 1119 NRDHLMEAI 1127
+ + L E I
Sbjct: 1013 SCETLYEII 1021
>gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
Length = 719
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 139/299 (46%), Gaps = 58/299 (19%)
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS 403
R E+ LC EA AE S KS AN SH+IR ++ I G+ E+ +
Sbjct: 328 RSEVELC-------EARDAAEEASRAKSEFLANMSHEIRTPISAIIGMSEMT-LNTNLTG 379
Query: 404 ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
E + L + A LL ++N ILD SK+EA KM+L EDF++ E+LE + + A
Sbjct: 380 EQQGYLVTVKKAAESLLHIINDILDISKIEARKMELRPEDFNLYEMLEKQLSVLKVQAEE 439
Query: 464 KGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG 523
KG+E+ + SD + GD +L QI+ NL+ NA+KFT +G++ V
Sbjct: 440 KGIELRANVSDDVSRCY---HGDEYRLGQIIINLVGNAIKFTEKGYVEV----------- 485
Query: 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKR 583
+V+ E F V DTG GI ++K
Sbjct: 486 ------------------------------SVDHVGSFEEGAVLEFRVKDTGIGISEDKC 515
Query: 584 KTVFENYVQVKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ +FE++VQ+ G G+GLGL I + LV +MGG I +E G+ F+F V L
Sbjct: 516 EKLFESFVQLNAGYSKRHPGSGLGLAISRQLVEMMGGHITFSSREGW--GSEFKFTVRL 572
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 18/132 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV-RSGLNDQRDLGAPHILPYDY 1058
+IL+A+D+ + L G VE ENG AL L+ SG P+D
Sbjct: 599 RILLAEDNATNQLYIAHFLTEQGFEVETAENGLEALDLLDNSG-------------PFDV 645
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
ILMD +MP M+G EAT+KIRE+ IPIIALTA+ + +K + GMD + KP+
Sbjct: 646 ILMDVQMPEMDGLEATKKIREQGN----EIPIIALTAYAMEGDREKFLSNGMDAYSSKPV 701
Query: 1119 NRDHLMEAIKYL 1130
N D L++ I L
Sbjct: 702 NIDELVQIIGKL 713
>gi|254424298|ref|ZP_05038016.1| hypothetical protein S7335_4457 [Synechococcus sp. PCC 7335]
gi|196191787|gb|EDX86751.1| hypothetical protein S7335_4457 [Synechococcus sp. PCC 7335]
Length = 926
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 173/358 (48%), Gaps = 41/358 (11%)
Query: 306 LVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAER 365
L+ ++ TS L+ +I + +G L+ + S A ++ + ++++A +
Sbjct: 320 LIVVMTVTSIWLLVCVIAVRMGYLLPV-----TSPVAVVLSTYVWVVVWQRLQANALLQV 374
Query: 366 KSMNKSLAFAN-ASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLN 424
+S AF N SH+IR L I L E+ E + ++ + L+ L+N
Sbjct: 375 RS-----AFLNTVSHEIRTPLNAIVNLSEMLQ-ETPLDNRQREYAESLHSSSQTLMTLIN 428
Query: 425 SILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGSVLKFSK 482
+LD SK+E+G++ + + ++ E +E ++L P A K +E+V + P+ ++
Sbjct: 429 DVLDFSKIESGQLLIGDYPVNLVETIERSIELLAPRAALKNIELVYAIAPNVPAL----- 483
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF----LQSI 538
++ D V+L+QILSNLLSNAVKFT+ G +SVR +PS S H L S+
Sbjct: 484 IRSDPVRLQQILSNLLSNAVKFTAVGEVSVRVR-------ASPSHQSRSHTLWGRLLASV 536
Query: 539 SCLFYKNKKARGDLEAVNAAQR---DENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+ L A N A+R D+ E FEV DTG GIP + +F + Q
Sbjct: 537 RSKL-PDWIWPHWLRA-NYAERSRPDQGLYELCFEVKDTGTGIPAARIPHLFRPFSQGDI 594
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNN 649
+ GGTGLGL I + L+R MGGDI K +G+ F F I +A+ N
Sbjct: 595 STAQMYGGTGLGLSISKRLIRRMGGDIW--AKSTLRKGSQFFFTFDAQIAQATLPPPN 650
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KILVA+D+ ++VA L LG + G L + L QR YD I
Sbjct: 802 KILVAEDNRTNQKVALRLLELLGYRADVVNTGIEVL----TALEHQR---------YDVI 848
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD MP M+G EAT++IR + IIA+TA+ + + + GMD +L KP+
Sbjct: 849 LMDMRMPEMDGVEATQRIRHMPHHKETW--IIAMTANTMDSDRELCLSVGMDDYLCKPIK 906
Query: 1120 RDHLMEAIK 1128
RD L A++
Sbjct: 907 RDALELALE 915
>gi|338212729|ref|YP_004656784.1| multi-sensor hybrid histidine kinase [Runella slithyformis DSM 19594]
gi|336306550|gb|AEI49652.1| multi-sensor hybrid histidine kinase [Runella slithyformis DSM 19594]
Length = 1457
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 147/294 (50%), Gaps = 50/294 (17%)
Query: 349 LCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN 408
+C + +A QAE+ S+ KS AN SH+IR L G+ G +L A ++ +
Sbjct: 797 VCLQREELKKAKVQAEQASVAKSEFLANMSHEIRTPLNGVIGFTDLLLKTALNETQ-QQY 855
Query: 409 LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
L +N AN LL ++N ILD SK+EAGK++L + D+ EL D+ A KG+E+
Sbjct: 856 LSIVNQSANSLLSIINDILDFSKIEAGKLELDIDRCDIFELGSQTADIITYQAQSKGLEM 915
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
+L+ S ++ +F + D V+LKQ+L NLLSNAVKFT EG I ++ P
Sbjct: 916 LLNIS-LNLPRF--IWTDEVRLKQVLVNLLSNAVKFTKEGEIELKI---------EPLTD 963
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
+S Q I L FEV DTG GI +K++ +F+
Sbjct: 964 TS-----QEIITL--------------------------RFEVRDTGIGIKPDKQEKIFD 992
Query: 589 NYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ Q + GGTGLGL I L+ LMG +++ + +G+ F F++ L
Sbjct: 993 AFSQEDASTTKKYGGTGLGLAISNKLLGLMGSRLQL--RSEPGQGSTFYFDLTL 1044
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 974 SSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACE--NG 1031
S Y++TE + +K ++L+A+D+ + +A+ +R E NG
Sbjct: 1179 SRMYRKTEKVSAQSLAVENKKESGNIRVLIAEDNPVNMLLAKTIIRRAAPNAVIIESLNG 1238
Query: 1032 EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPII 1091
AL+ ++ L D I MD +MP MNGYEAT+ IR + VH+PII
Sbjct: 1239 REALRACQAQLPD-------------IIFMDVQMPEMNGYEATQMIRNLQA--DVHVPII 1283
Query: 1092 ALTAHISGEEADKTIEAGMDVHLGKPL 1118
ALTA E DK +EAGMD + KP
Sbjct: 1284 ALTAGNLKGEKDKCLEAGMDDFIAKPF 1310
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGA 1023
L+ + G+GS+ Y ++ E GE + K +L+ DD+ R + L
Sbjct: 1026 LQLRSEPGQGSTFYFDLTLKTEPGESITWENIDLIKNVLIVDDNDNNRVILRQMLLLKQI 1085
Query: 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKR 1083
E +NG ALQL+ G YD I+MD MP M+G E RKIR ++
Sbjct: 1086 VSEEAKNGFEALQLLAQGKR------------YDAIMMDYHMPYMDGLETIRKIRSSFQK 1133
Query: 1084 NQVHIPIIALTAHISGEEADKTIEAG-----MDVHLGKPLNRDHLMEAIKYLH 1131
P+I L H S + D TI G ++ L KP+ + +A+ ++
Sbjct: 1134 LPEEQPVILL--HSSSD--DGTIIKGCEELMVNQRLVKPIKMQEMYDALSRMY 1182
>gi|254467028|ref|ZP_05080439.1| response regulator, sensor histidine kinase component GacS
[Rhodobacterales bacterium Y4I]
gi|206687936|gb|EDZ48418.1| response regulator, sensor histidine kinase component GacS
[Rhodobacterales bacterium Y4I]
Length = 793
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 140/300 (46%), Gaps = 53/300 (17%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLG 421
+AE + KS A SH+IR + G+ G+ E+ E E + + + LL
Sbjct: 263 RAEAATETKSRFLATMSHEIRTPINGVLGMAEVLN-ETRLTPEQTSCTSTILASSEALLR 321
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFS 481
++N ILD SK+EAGK Q++++ F++ +++ DV L P A KGVE+ +D + + +F
Sbjct: 322 IVNDILDFSKLEAGKAQMLQQPFNLRDVIYDVATLMSPSATAKGVEICIDIPEHTPPEFI 381
Query: 482 KVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCL 541
GD +++QIL NL+ NAVKFT EGHIS+
Sbjct: 382 ---GDSGRVRQILMNLVGNAVKFTLEGHISI----------------------------- 409
Query: 542 FYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG--- 598
N AR ++ +V DTG GIP++ +F + QV+
Sbjct: 410 -TLNYDARHNI-------------PLCIDVRDTGVGIPEDSIGQIFHAFEQVESTTARRF 455
Query: 599 -GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELA 657
GTGLGL I L + MGG I++V + +G+CF + L + S + K +A
Sbjct: 456 EGTGLGLAISSRLTQAMGGRIDVVSQAG--KGSCFTVCLTLPVAAPSPAPSRPLAGKRVA 513
Score = 67.8 bits (164), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LVA+D+ + V + L G + C NG+ A++ + P+D +
Sbjct: 659 RLLVAEDNRTNQLVLKKMLGPSGIQMTICSNGQEAVETFAAQ-------------PFDLV 705
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRN-QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMD MP+M+G EATR++R E+ N + PI+ALTA++ + AGM L KP+
Sbjct: 706 LMDMSMPVMDGLEATRRLRAWEQENARAPCPILALTANVLSTDEAACRAAGMVGFLSKPV 765
Query: 1119 NRDHLMEAI 1127
+ L++ I
Sbjct: 766 RKQELLDQI 774
>gi|89242035|dbj|BAE80688.1| histidine kinase [Zea mays]
Length = 995
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 169/357 (47%), Gaps = 47/357 (13%)
Query: 319 ILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANAS 378
+ +I M VG ++ + + + ++M E +QAE + KS A S
Sbjct: 342 VFVICMLVGYIVGAAWSRYDNVKEDCRKME---------ELKKQAEAADVAKSQFLATVS 392
Query: 379 HDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQ 438
H+IR + G+ G++++ ++ S + VC L+ L+N +LD +K+EAGK+
Sbjct: 393 HEIRTPMNGVLGMLDM-LLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLD 451
Query: 439 LIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLL 498
L FD+ +L+DV+ LF + KG+E+ + S+ V + + GD + +QI++NL+
Sbjct: 452 LESVPFDLRSILDDVISLFSSKSREKGIELAVYVSE-RVPEL--LLGDPGRFRQIITNLV 508
Query: 499 SNAVKFTSEGHISVRACVKKPSAIGNPS-LSSSRHGF---------------LQSISCLF 542
N++KFT GHI V+ + S + S + S +G L ++S
Sbjct: 509 GNSIKFTERGHIFVQVHLADHSNLATESKVESVANGMNGHKDEKTAVATSVSLNTLSG-- 566
Query: 543 YKNKKARGDLEAVN---AAQRDENAME-------FTFEVDDTGKGIPKEKRKTVFENYVQ 592
++ +R E + +++E E V+DTG GIP + + VF ++Q
Sbjct: 567 FEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQ 626
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
GGTG+GL I + LV LMGG I V + + G+ F F L + SA
Sbjct: 627 ADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPH--VGSTFTFTAALQRCDRSA 681
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 35/191 (18%)
Query: 961 SVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRG----KKILVADDSMMLRRVAEI 1016
SV+ K +SG + ++ I + ER L G K ILV DD+ + RVA
Sbjct: 808 SVITKPLKASGLAACLFQTLGITQSSNERRDNSGSLHGLLLGKNILVVDDNKVNLRVAAG 867
Query: 1017 NLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076
L+ GA VE E+G+ AL L PH + LMD +MP M+G+EAT++
Sbjct: 868 TLKKFGAKVECVESGKDALA----------SLQVPH--KFHLCLMDIQMPEMDGFEATKQ 915
Query: 1077 IRE-EEKRNQ------------------VHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
IR E K N+ H+P++A+TA + ++ + GMD ++ KP
Sbjct: 916 IRAMEAKANEQAVACDDSDTDGATRAARWHLPVLAMTADVIQATHEECTKYGMDGYVTKP 975
Query: 1118 LNRDHLMEAIK 1128
L +A++
Sbjct: 976 FEEKQLFQALQ 986
>gi|162461092|ref|NP_001104866.1| histidine kinase2 [Zea mays]
gi|38347686|dbj|BAD01584.1| histidine kinase 2 [Zea mays]
Length = 1007
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 172/362 (47%), Gaps = 53/362 (14%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLC-ASLIKQMEATQQAERKSMNKSLAFANAS 378
L+I + +G ++ + R AR E SL+K+ +AE + KS A S
Sbjct: 382 LVIALLIGYIVHA-----TAKRIARVEDDFQEMSLLKK-----RAEDADIAKSQFLATVS 431
Query: 379 HDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQ 438
H+IR + G+ G++++ ++ + + +R L+ L+N +LD +K+E+GK++
Sbjct: 432 HEIRTPMNGVLGMLQML-MDTDLDTTQQDYVRTAQASGKTLVSLINEVLDQAKIESGKLE 490
Query: 439 LIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLL 498
L FD+ + +D++ LF A KG+E+ + SD + GD +++QI++NL+
Sbjct: 491 LEVVPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVP---QTLIGDPGRIRQIITNLV 547
Query: 499 SNAVKFTSEGHI--------SVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARG 550
N++KFT +GHI + C++ + I + ++S N+K
Sbjct: 548 GNSIKFTEKGHIYLTVHVVEEIMHCLEVETGI----------QYTNTLSGYPVANRKR-- 595
Query: 551 DLEAVNAAQRDENAMEFTF------------EVDDTGKGIPKEKRKTVFENYVQVKEG-- 596
E R+ N+ E F V+DTG GIP + + VF ++QV
Sbjct: 596 SWENFRLFSRELNSSEMPFAPIASDSISLMISVEDTGAGIPFDAQSRVFTPFMQVGPSIA 655
Query: 597 --EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEK 654
GGTG+GL I + LV LM G+I K + G+ F F L +S N+N + K
Sbjct: 656 RIHGGTGIGLSISKCLVGLMKGEIGFASKP--QVGSTFTFTAVLTRVHSSRNENKSSEFK 713
Query: 655 EL 656
E+
Sbjct: 714 EI 715
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L K+I+V DD+++ +VA L+ GA V ++G+ A+ L++ PH
Sbjct: 860 LHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLK----------PPH--N 907
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR-----------------NQVHIPIIALTAHIS 1098
+D MD +MP M+G+EAT++IR E+ Q PI+A+TA +
Sbjct: 908 FDACFMDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPECVGVRQWRTPILAMTADVI 967
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ +++ MD ++ KP + L +
Sbjct: 968 QATHEQCLKSEMDGYVSKPFEGEQLYREV 996
>gi|417857753|ref|ZP_12502810.1| two component sensor kinase/response regulator hybrid
[Agrobacterium tumefaciens F2]
gi|338823757|gb|EGP57724.1| two component sensor kinase/response regulator hybrid
[Agrobacterium tumefaciens F2]
Length = 1232
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 137/292 (46%), Gaps = 65/292 (22%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN----VCAN 417
+AE KS AN SH+IR + G+ G+ EL S+L+T + N
Sbjct: 674 RAEAADRAKSEFLANMSHEIRTPMNGVLGMAELL-----AKSKLDTRQKTFTDIIVKSGN 728
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDG 475
LL ++N ILD SK+EAG+M+L FD E +EDVV L A+ K +E+V +DPS
Sbjct: 729 ALLTIINDILDFSKIEAGQMRLRSVPFDPAEAVEDVVSLLSSAALEKDIELVVRIDPS-- 786
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
F KV GD + +QI++NL+ NAVKFT GH+ + + A
Sbjct: 787 ---AFGKVMGDAGRFRQIVTNLVGNAVKFTETGHVLIELSAQSAEAS------------- 830
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
EA+ + V+D+G GIP +K +T+F+ + QV +
Sbjct: 831 -----------------EAI-----------LSLRVEDSGIGIPADKLETIFDKFSQV-D 861
Query: 596 GEG-----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
G GTGLGL I L+ L G I +V E G G+ F N+ + E
Sbjct: 862 GSATRRHEGTGLGLAITVGLIGLFDGVINVV-SEVGT-GSTFEVNIPFQVTE 911
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 1059 ILMDCEMPIMNGYEAT--RKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
ILMD MP+MNG++AT + E+ + H+PII +TAH + ++ + AGMD +L K
Sbjct: 1146 ILMDVSMPVMNGHQATLAIRAAEQAAADGRHVPIIGVTAHTQDADREQCLAAGMDDYLSK 1205
Query: 1117 PLNRDHLMEAI 1127
P++ + L + I
Sbjct: 1206 PISPEILEDKI 1216
Score = 48.1 bits (113), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 20/136 (14%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV DD+ + RR+ LR G A E+G + + + L + LG D I
Sbjct: 927 RVLVIDDNDVNRRILTEQLRTWGIDGHAVEDGPSGIAV----LQEAASLG----FAIDAI 978
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEE---ADKTIEAGMDVHLGK 1116
++D MP+MNG + +IR + + + + I + + + G+E D +I+A HL K
Sbjct: 979 ILDYHMPVMNGLDVVERIRADSRFDDIAI-VFLTSMDVVGDETLFTDLSIQA----HLMK 1033
Query: 1117 P----LNRDHLMEAIK 1128
P L R L + ++
Sbjct: 1034 PARARLLRSTLFDVVR 1049
>gi|313682762|ref|YP_004060500.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
16994]
gi|313155622|gb|ADR34300.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
16994]
Length = 977
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 135/277 (48%), Gaps = 61/277 (22%)
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGLLNSILDT 429
AN SH+IR L GI GL EL ++LE R N+ ++ LL ++N ILD
Sbjct: 400 LANMSHEIRTPLNGIIGLTELVL-----KTDLEPKQRDFLEKSNLSSHALLDIINDILDY 454
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAGK L + F++ ++++++ LF A++KG+ + D L + + GD ++
Sbjct: 455 SKIEAGKFDLENKPFELNNVIQNIMSLFEFQAVQKGIILTYDIQ----LNENVMIGDALR 510
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L QIL+NL+ NAVKFT GHI +R
Sbjct: 511 LTQILTNLVGNAVKFTESGHIGIRVI---------------------------------- 536
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLG 605
+ +E + F V+DTG G+ E + +F+ + Q + GG+GLGL
Sbjct: 537 -------STDENEEDIRLQFSVEDTGIGMNAEAQNKLFQEFSQADTSITRKYGGSGLGLA 589
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRF-NVFLAIR 641
I + LV++MGGDI V+ E G G+ F F VF IR
Sbjct: 590 ISKQLVQMMGGDI-WVESEEG-IGSRFIFTTVFGKIR 624
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 16/145 (11%)
Query: 984 EEDGERSQAQ-KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGL 1042
E+ RSQ+ +RG +IL+A+D+ + + V L + V+ NG+ A++ +S L
Sbjct: 632 EKKTARSQSDVDDIRGARILLAEDNGINQIVVVEMLENADLIVDVAANGKEAVEQAQSHL 691
Query: 1043 NDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEA 1102
YD ILMD +MP+M+G+EA + IR + V PIIAL+A + ++
Sbjct: 692 -------------YDLILMDLQMPVMDGFEAAKAIRAIPEYKDV--PIIALSAAVMQQDK 736
Query: 1103 DKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ T AGM+ HL KP++ D L+E +
Sbjct: 737 EFTSAAGMNEHLSKPVDYDALIEVL 761
>gi|421864461|ref|ZP_16296146.1| Signal transduction histidine kinase [Burkholderia cenocepacia
H111]
gi|358075081|emb|CCE47024.1| Signal transduction histidine kinase [Burkholderia cenocepacia
H111]
Length = 1016
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 149/298 (50%), Gaps = 56/298 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQMNVC 415
+EA + A++ + +KS+ A SH+IR L + G +EL ++ P +L+ L ++
Sbjct: 522 VEARRAADQANKSKSMFLAAMSHEIRTPLNAVLGNLEL--MKRAPLPDLQRRRLEVVDSS 579
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSD 474
+ LL +L+ +LD S+VEAG+M + F++ LL DV+ FHP+A K + + D SD
Sbjct: 580 SATLLRILDDVLDLSRVEAGEMSIDSVPFNLVALLRDVMASFHPLASEKNLCLTADVASD 639
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
+ + GD V+L+QILSNL+ NA+KFT G + V AC ++ GN
Sbjct: 640 LTPYRI----GDPVRLRQILSNLIGNAIKFTDAGTVCVSACERR----GN---------- 681
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+ + +E + V DTG GI + T+FE Y Q
Sbjct: 682 --------------------------EYDMVEVS--VSDTGIGIAESAISTIFEPYRQAD 713
Query: 595 EG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDN 648
E GGTGLGL + + L+ M G I + + N +G+ F +V LA+ E A D+
Sbjct: 714 ESIHRQYGGTGLGLALCKRLIEAMHGGISV--RSNPGQGSEFVIHVPLAVAEEPAIDS 769
>gi|323691353|ref|ZP_08105628.1| hypothetical protein HMPREF9475_00490 [Clostridium symbiosum
WAL-14673]
gi|323504693|gb|EGB20480.1| hypothetical protein HMPREF9475_00490 [Clostridium symbiosum
WAL-14673]
Length = 748
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 154/325 (47%), Gaps = 51/325 (15%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
+L+ + +++ LT ++ + R++ +I+ A ++AE + KS+ +N SH
Sbjct: 313 VLVNCGMSLVLVALTLIYFNLYTYRRDKGQYLEIIR---AKEEAEAANRAKSMFLSNMSH 369
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQL 439
DIR + I G+ + G G +E L+++++ + LLG++N +LD SK+EA K++L
Sbjct: 370 DIRTPMNAIIGMTRIARENIGDGERVEDCLKKIDISSRLLLGIINDVLDMSKIEARKVEL 429
Query: 440 IEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLS 499
E F +G +++ + A K + + ++ L V GD V+L QI+ N+LS
Sbjct: 430 AREAFSMGAMIDSNRMIMERQAENKQLTLEFKKTN---LNHDAVVGDSVRLSQIIMNILS 486
Query: 500 NAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQ 559
NAVK T EG R E +
Sbjct: 487 NAVKCTPEG---------------------------------------GRITFEIIELPC 507
Query: 560 RDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV----KEGEGGTGLGLGIVQSLVRLMG 615
E++ + F + DTG G+ +E +K +FE + Q + GTGLG+ I + LV LMG
Sbjct: 508 TREDSGRYRFVISDTGVGMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKLVELMG 567
Query: 616 GDIEIVDKENGERGTCFRFNVFLAI 640
G +E V+ GE GT FR + L +
Sbjct: 568 GTVE-VESRQGE-GTVFRVELELPL 590
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 10/133 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK+ L+A+D+ + +A L G E NG+ A+++ + +R+ G
Sbjct: 617 LAGKRCLIAEDNELNAEIAAAFLEMAGIKSEKASNGQEAVEIYK-----RRENGF----- 666
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D ILMD MP M+GYEA R+IR +R+ + IPI+A+TA+ E+ + ++GM+ HL
Sbjct: 667 FDIILMDIRMPEMDGYEACRQIRGAGRRDSLTIPIVAMTANAFSEDIELAGKSGMNAHLA 726
Query: 1116 KPLNRDHLMEAIK 1128
KP++ + ++ +K
Sbjct: 727 KPVDAEQMISLLK 739
>gi|91772161|ref|YP_564853.1| PAS/PAC sensor signal transduction histidine kinase
[Methanococcoides burtonii DSM 6242]
gi|91711176|gb|ABE51103.1| HATPase domain-containing multisensor signal transduction histidine
kinase [Methanococcoides burtonii DSM 6242]
Length = 763
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 140/291 (48%), Gaps = 67/291 (23%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A AE + KS AN SH++R L I G EL +E G + N +Q +
Sbjct: 517 IQAKLDAEATNRTKSEFLANMSHELRTPLNSIIGFSELL-LEKTIG---DINNKQERYIS 572
Query: 417 N------DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
N LL L+N ILD SKVE+GKM+L ++F + ++ D+V L +P+A+ +E++
Sbjct: 573 NILTGGQHLLSLINEILDISKVESGKMELHYDEFAISSMISDIVILLNPLAITNRIEIIT 632
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPSLSS 529
D + S + D++K+KQIL NLLSNA+KFT+E G IS+ A
Sbjct: 633 DIDK----RLSLINADKIKIKQILYNLLSNAIKFTNENGTISIEAIF------------- 675
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
D+ M+ + D G GI KE + +F+
Sbjct: 676 -------------------------------DDKLMQIC--IKDNGIGIEKENIEKLFQP 702
Query: 590 YVQVKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ Q+ GTGLGL +V++ V + GG+I VD E G +G+ F F +
Sbjct: 703 FQQIDSAASRKYQGTGLGLALVKNFVEMHGGNI-WVDSEMG-KGSAFTFTI 751
>gi|323483203|ref|ZP_08088594.1| hypothetical protein HMPREF9474_00343 [Clostridium symbiosum
WAL-14163]
gi|323403476|gb|EGA95783.1| hypothetical protein HMPREF9474_00343 [Clostridium symbiosum
WAL-14163]
Length = 748
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 154/325 (47%), Gaps = 51/325 (15%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
+L+ + +++ LT ++ + R++ +I+ A ++AE + KS+ +N SH
Sbjct: 313 VLVNCGMSLVLVALTLIYFNLYTYRRDKGQYLEIIR---AKEEAEAANRAKSMFLSNMSH 369
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQL 439
DIR + I G+ + G G +E L+++++ + LLG++N +LD SK+EA K++L
Sbjct: 370 DIRTPMNAIIGMTRIARENIGDGERVEDCLKKIDISSRLLLGIINDVLDMSKIEARKVEL 429
Query: 440 IEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLS 499
E F +G +++ + A K + + ++ L V GD V+L QI+ N+LS
Sbjct: 430 AREAFSMGAMIDSNRMIMERQAENKQLTLEFKKTN---LNHDAVVGDSVRLSQIIMNILS 486
Query: 500 NAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQ 559
NAVK T EG R E +
Sbjct: 487 NAVKCTPEG---------------------------------------GRITFEIIELPC 507
Query: 560 RDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV----KEGEGGTGLGLGIVQSLVRLMG 615
E++ + F + DTG G+ +E +K +FE + Q + GTGLG+ I + LV LMG
Sbjct: 508 TREDSGRYRFVISDTGVGMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKLVELMG 567
Query: 616 GDIEIVDKENGERGTCFRFNVFLAI 640
G +E V+ GE GT FR + L +
Sbjct: 568 GTVE-VESRQGE-GTVFRVELELPL 590
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 10/133 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK+ L+A+D+ + +A L G E NG+ A+++ + +R+ G
Sbjct: 617 LAGKRCLIAEDNELNAEIAAAFLEMAGIKSEKASNGQEAVEIYK-----RRENGF----- 666
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D ILMD MP M+GYEA R+IR +R+ + IPI+A+TA+ E+ + ++GM+ HL
Sbjct: 667 FDIILMDIRMPEMDGYEACRQIRGAGRRDSLTIPIVAMTANAFSEDIELAGKSGMNAHLA 726
Query: 1116 KPLNRDHLMEAIK 1128
KP++ + ++ +K
Sbjct: 727 KPVDAEQMISLLK 739
>gi|153869352|ref|ZP_01998985.1| Response regulator receiver [Beggiatoa sp. PS]
gi|152074125|gb|EDN71014.1| Response regulator receiver [Beggiatoa sp. PS]
Length = 1610
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 174/367 (47%), Gaps = 49/367 (13%)
Query: 364 ERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL---RQMNVCANDLL 420
E S KS AN SH++R L + L +L E G+ + + + ++ +DLL
Sbjct: 898 ELASRYKSEFLANMSHELRTPLNSLLILAQLL-TENRAGNLTDKQVEYAKTIHSAGSDLL 956
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
L+N ILD SKVEAG++++ E +L+E + F VA + +E + ++
Sbjct: 957 TLINEILDLSKVEAGRIEVHAEAVSFTDLVEMIEQKFRHVAAEQKLEFQITVANDLP--- 1013
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
+ DR +LKQIL+NLLSNA KFTS+G + + L + G+ Q
Sbjct: 1014 PILHTDRQRLKQILNNLLSNAFKFTSQGAVKLDIQF----------LGENTPGYSQQEGV 1063
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--- 597
+ + GD + R+++ + F V DTG GIP +K++TVFE + QV
Sbjct: 1064 ---RGRTTPGDFQPDGIKGREKS--QIAFSVTDTGIGIPTDKQETVFEAFQQVDGSTSRR 1118
Query: 598 -GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKEL 656
GGTGLGL I + L RL+GGDI + ++G+ F + I S+NDN E ++
Sbjct: 1119 YGGTGLGLSISRQLARLLGGDILL--HSEADKGSTFTLYISEKIERHSSNDNRDIPETQI 1176
Query: 657 AGGDSAAGDTQLQHMNLTVKAPS------PSLSIRTNSPRLNILSPGSRH--EGSHVVLL 708
+ ++ +K P+ PS ++ P P R + S VLL
Sbjct: 1177 QNTPAL--------LSPIIKTPTLDTLTIPSTPMKALEPL-----PDDRDKIQPSDKVLL 1223
Query: 709 IANEERR 715
I ++R+
Sbjct: 1224 IVEDDRK 1230
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 12/133 (9%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GKK+L+ DD L V A ENG AL+L L D+
Sbjct: 1485 LAGKKVLIVDDDPRNTFALATILEDKNMEVIAGENGHEALEL----LEQHEDIA------ 1534
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+LMD MP M+GYEA R+IR ++ R + +PIIALTA + K IEAG + +L
Sbjct: 1535 --IVLMDIMMPEMDGYEAMRQIRAQKNRFRRQLPIIALTAKAMKGDKTKCIEAGANDYLS 1592
Query: 1116 KPLNRDHLMEAIK 1128
KP++ D L+ ++
Sbjct: 1593 KPVDTDKLISLMR 1605
>gi|355626397|ref|ZP_09048706.1| hypothetical protein HMPREF1020_02785 [Clostridium sp. 7_3_54FAA]
gi|354820863|gb|EHF05267.1| hypothetical protein HMPREF1020_02785 [Clostridium sp. 7_3_54FAA]
Length = 725
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 154/325 (47%), Gaps = 51/325 (15%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
+L+ + +++ LT ++ + R++ +I+ A ++AE + KS+ +N SH
Sbjct: 290 VLVNCGMSLVLVALTLIYFNLYTYRRDKGQYLEIIR---AKEEAEAANRAKSMFLSNMSH 346
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQL 439
DIR + I G+ + G G +E L+++++ + LLG++N +LD SK+EA K++L
Sbjct: 347 DIRTPMNAIIGMTRIARENIGDGERVEDCLKKIDISSRLLLGIINDVLDMSKIEARKVEL 406
Query: 440 IEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLS 499
E F +G +++ + A K + + ++ L V GD V+L QI+ N+LS
Sbjct: 407 AREAFSMGAMIDSNRMIMERQAENKQLTLEFKKTN---LNHDAVVGDSVRLSQIIMNILS 463
Query: 500 NAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQ 559
NAVK T EG R E +
Sbjct: 464 NAVKCTPEG---------------------------------------GRITFEIIELPC 484
Query: 560 RDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV----KEGEGGTGLGLGIVQSLVRLMG 615
E++ + F + DTG G+ +E +K +FE + Q + GTGLG+ I + LV LMG
Sbjct: 485 TREDSGRYRFVISDTGVGMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKLVELMG 544
Query: 616 GDIEIVDKENGERGTCFRFNVFLAI 640
G +E V+ GE GT FR + L +
Sbjct: 545 GTVE-VESRQGE-GTVFRVELELPL 567
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 10/133 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK+ L+A+D+ + +A L G E NG+ A+++ + +R+ G
Sbjct: 594 LAGKRCLIAEDNELNAEIAAAFLEMAGIKSEKASNGQEAVEIYK-----RRETGF----- 643
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D ILMD MP M+GYEA R+IR +R+ + IPI+A+TA+ E+ + ++GM+ HL
Sbjct: 644 FDIILMDIRMPEMDGYEACRQIRGAGRRDSLTIPIVAMTANAFSEDIELAGKSGMNAHLA 703
Query: 1116 KPLNRDHLMEAIK 1128
KP++ + ++ +K
Sbjct: 704 KPVDAEQMISLLK 716
>gi|171059271|ref|YP_001791620.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170776716|gb|ACB34855.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1959
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 125/266 (46%), Gaps = 50/266 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE + KS+ AN SH+IR + I GL L ++ + E L Q+ A+
Sbjct: 1220 ARDRAEAANRAKSVFLANMSHEIRTPMNAIIGLTHLLLRDSTDTVQQE-RLGQVTGAAHH 1278
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N ILD SK+E+GK++L + DF V LL L A KG+E+VLD S
Sbjct: 1279 LLDVINDILDLSKIESGKLELEQTDFPVDTLLSRACALVGERARAKGLELVLD----SHR 1334
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+ ++GD +L Q L NLLSNAVKFT +G + VRA +
Sbjct: 1335 LPTSLRGDPTRLSQALVNLLSNAVKFTEQGSVVVRAEI---------------------- 1372
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
D + + FEVDDTG G+ E+ +F + Q
Sbjct: 1373 -------------------VHEDPDGLTVRFEVDDTGIGMAPEQIGRLFAAFEQADSSTT 1413
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEI 620
GGTGLGL I + L LMGG++ +
Sbjct: 1414 RRFGGTGLGLVITRHLAELMGGEVGV 1439
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 15/122 (12%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G ++L+A+D+ + R VA L+ G V+ +G+ A+ + QR Y
Sbjct: 1625 GARVLLAEDNAVNREVAVELLQAAGMQVDLAVDGQEAIDMC------QRT-------AYA 1671
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+LMD +MP ++G EATR+IR + + +PI+A+TA+ GE+ + AGM+ H+ KP
Sbjct: 1672 LVLMDMQMPQVDGLEATRRIRADAR--LADLPILAMTANAFGEDRAACLAAGMNDHIAKP 1729
Query: 1118 LN 1119
++
Sbjct: 1730 VD 1731
>gi|418407316|ref|ZP_12980634.1| two component sensor kinase/response regulator hybrid
[Agrobacterium tumefaciens 5A]
gi|358006460|gb|EHJ98784.1| two component sensor kinase/response regulator hybrid
[Agrobacterium tumefaciens 5A]
Length = 1232
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 139/292 (47%), Gaps = 65/292 (22%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN----VCAN 417
+AE KS AN SH+IR + G+ G+ EL S L+T + N
Sbjct: 672 RAEAADRAKSEFLANMSHEIRTPMNGVLGMAELL-----AKSNLDTRQKTFTDIIVKSGN 726
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDG 475
LL ++N ILD SK+EAG+M+L FD E +EDVV L A+ K +E+V +DPS
Sbjct: 727 ALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKNIELVVRIDPS-- 784
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
F KV GD + +Q+++NL+ NAVKFT GH+ + + SA + ++ S R
Sbjct: 785 ---VFGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLIELSAQ--SAEASETILSLR---- 835
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
V+D+G GIP +K +T+F+ + QV +
Sbjct: 836 -----------------------------------VEDSGIGIPADKLETIFDKFSQV-D 859
Query: 596 GEG-----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
G GTGLGL I LV L G I +V E G +G+ F N+ + E
Sbjct: 860 GSATRRHEGTGLGLAITVGLVGLFDGTINVV-SEVG-KGSTFEVNIPFHVTE 909
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 1059 ILMDCEMPIMNGYEATRKIR--EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
ILMD MP+MNG++AT IR E+ + H+PII +TAH + + I AGMD +L K
Sbjct: 1146 ILMDVSMPVMNGHQATMAIRSAEQAAADGRHVPIIGVTAHTQDADRELCIAAGMDDYLSK 1205
Query: 1117 PLNRDHLMEAI 1127
P++ + L + I
Sbjct: 1206 PISPEILEDKI 1216
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV DD+ + RR+ L+ G A ++G + + + L + LG D I
Sbjct: 925 RVLVIDDNDVNRRILTEQLKTWGIDGHAVQDGPSGIAV----LQEAASLG----FTIDAI 976
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP-- 1117
++D MP+MNG + +IR + + + + I + + + G+E+ T + + HL KP
Sbjct: 977 ILDYHMPVMNGLDVVERIRADSRFDDIAI-VFLTSMDVVGDESLFT-DLSVQAHLMKPAR 1034
Query: 1118 --LNRDHLMEAIK 1128
L R L + ++
Sbjct: 1035 ARLLRSTLFDVVR 1047
>gi|189425452|ref|YP_001952629.1| histidine kinase [Geobacter lovleyi SZ]
gi|189421711|gb|ACD96109.1| histidine kinase [Geobacter lovleyi SZ]
Length = 735
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 142/295 (48%), Gaps = 53/295 (17%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH+IR + I GL +L +E + ++ L ++ + LL ++N ILD
Sbjct: 356 KSEFLANMSHEIRTPMNAIIGLAQLT-LETRLDPQQKSYLERLRNASTALLSIINDILDF 414
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EA K+++ + ++ ++L+D V LF A KG+++ L+ +D + GD ++
Sbjct: 415 SKIEAHKIEIAHLELNLADILQDGVTLFQTAAKEKGLKLSLEIADDIP---QHLIGDPLR 471
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L Q+L+NL+SNAVKFT G ++VRA
Sbjct: 472 LGQVLNNLISNAVKFTERGSVTVRA----------------------------------- 496
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLG 605
A RD+ + V DTG GI KE+ + +F+ + Q + GGTGLGL
Sbjct: 497 ------ELADRDDQQVIIRILVSDTGIGIDKEQSERLFQPFTQADGSIVRRFGGTGLGLS 550
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFN--VFLAIREASANDNNTQGEKELAG 658
I ++LV LMGG I + ++G+ F F + LA S D E+AG
Sbjct: 551 IARNLVELMGGSITL--SSCPDQGSTFAFTTRLDLAATVPSQPDQPQHTPYEIAG 603
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 20/139 (14%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
P+ G +IL+ +D+ + + VA L G V +G ++ +++ +
Sbjct: 604 PIHGARILLVEDNEVNQFVAREFLTKAGLKVTCAAHGGEGVEWIKNSV------------ 651
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK--TIEAGMDV 1112
+D +LMD +MP+M+G +AT+ IR+ Q +PIIA+TA + EAD+ ++AGMD
Sbjct: 652 -FDAVLMDMQMPVMDGVQATQLIRKLPAGRQ--LPIIAMTA--AAMEADRQTCLDAGMDD 706
Query: 1113 HLGKPLNRDHLMEA-IKYL 1130
+L KP+ ++E IK++
Sbjct: 707 YLSKPIVPLEILEKLIKWI 725
>gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid
[Agrobacterium sp. H13-3]
gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid
[Agrobacterium sp. H13-3]
Length = 1223
Score = 120 bits (300), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 139/292 (47%), Gaps = 65/292 (22%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN----VCAN 417
+AE KS AN SH+IR + G+ G+ EL S L+T + N
Sbjct: 663 RAEAADRAKSEFLANMSHEIRTPMNGVLGMAELL-----AKSNLDTRQKTFTDIIVKSGN 717
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDG 475
LL ++N ILD SK+EAG+M+L FD E +EDVV L A+ K +E+V +DPS
Sbjct: 718 ALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKNIELVVRIDPS-- 775
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
F KV GD + +Q+++NL+ NAVKFT GH+ + + SA + ++ S R
Sbjct: 776 ---VFGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLIELSAQ--SAEASETILSLR---- 826
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
V+D+G GIP +K +T+F+ + QV +
Sbjct: 827 -----------------------------------VEDSGIGIPADKLETIFDKFSQV-D 850
Query: 596 GEG-----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
G GTGLGL I LV L G I +V E G +G+ F N+ + E
Sbjct: 851 GSATRRHEGTGLGLAITVGLVGLFDGTINVV-SEVG-KGSTFEVNIPFHVTE 900
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 1059 ILMDCEMPIMNGYEAT--RKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
ILMD MP+MNG++AT + E+ + H+PII +TAH + + I AGMD +L K
Sbjct: 1137 ILMDVSMPVMNGHQATLAIRAAEQAAADGRHVPIIGVTAHTQDADRELCIAAGMDDYLSK 1196
Query: 1117 PLNRDHLMEAI 1127
P++ + L + I
Sbjct: 1197 PISPEILEDKI 1207
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV DD+ + RR+ L+ G A ++G + + + L + LG D I
Sbjct: 916 RVLVIDDNDVNRRILAEQLKTWGIDGHAVQDGPSGIAV----LQEAASLG----FAIDAI 967
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP-- 1117
++D MP+MNG + +IR + + + + I + + + G+E+ T + + HL KP
Sbjct: 968 ILDYHMPVMNGLDVVERIRADSRFDDIAI-VFLTSMDVVGDESLFT-DLSVQAHLMKPAR 1025
Query: 1118 --LNRDHLMEAIK 1128
L R L + ++
Sbjct: 1026 ARLLRSTLFDVVR 1038
>gi|39656315|gb|AAR29880.1| putative histidine kinase HHK1p [Cochliobolus heterostrophus]
gi|452004803|gb|EMD97259.1| hypothetical protein COCHEDRAFT_91652 [Cochliobolus heterostrophus
C5]
Length = 2370
Score = 120 bits (300), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 157/338 (46%), Gaps = 67/338 (19%)
Query: 329 LISMLTFVFKSARAAR-KEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAG 387
++ M ARAA K A+ I+ M+ ++A + KSL AN SH++R L G
Sbjct: 1849 MLEMQKRALAQARAAEIKAKEAEANAIRNMKLKEEAAKA---KSLFLANVSHELRTPLNG 1905
Query: 388 ITGLIELCYVEAGP-GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV 446
+ G+ EL ++A P E + VCA+ LL ++N +LD SK+EAGKM ++E +
Sbjct: 1906 VIGMSEL--LKASPLNGEQSGYADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPISL 1963
Query: 447 GELLEDVVDLFHPVAMRKGVEVV----LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAV 502
E + +VV +G++ + LDP V GD V+L QIL NLLSN+
Sbjct: 1964 NETIAEVVRALAYTNAERGLKTIEQLELDPE-------MLVMGDPVRLHQILMNLLSNSY 2016
Query: 503 KFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562
KFT G ++VRA V Q
Sbjct: 2017 KFTPRGSVTVRAVVD-----------------------------------------QETS 2035
Query: 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVR-LMGGD 617
+ T V DTG GIP E+++ +F + Q++ GGTGLGL I ++L+ +M G
Sbjct: 2036 EWADVTCSVIDTGIGIPDEQKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGT 2095
Query: 618 IEIVDKENGERGTCFRFNV-FLAIREASANDNNTQGEK 654
+ + D + G +GT F++ F + +A A D + +
Sbjct: 2096 VRL-DSQPG-KGTTVTFSLRFKKVPKARAGDQQQRSRE 2131
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
P R ++ +A+D+++ +R+A ++ LG +A +G + + + R
Sbjct: 2160 PRRDLRVCIAEDNLINQRIAISFVQKLGFKCDAYLDGFKTIDALERASENGR-------- 2211
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
P+ +LMD +MP +GYEAT+ IR+ ++ IIA+TA + +K IE+GM+ +L
Sbjct: 2212 PFHLVLMDVQMPHCDGYEATKLIRKHPNPEIRNVLIIAMTASAIQGDREKCIESGMNNYL 2271
Query: 1115 GKPL 1118
KP+
Sbjct: 2272 AKPV 2275
>gi|428212988|ref|YP_007086132.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428001369|gb|AFY82212.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 932
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 142/287 (49%), Gaps = 61/287 (21%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
A ++AE+ S+ KS AN SH+IR A+ G+TGL+ +E +E + +
Sbjct: 269 ARREAEQASIAKSYFLANMSHEIRTPMNAVLGMTGLL----LETVLTAEQRDFIETIRTS 324
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
+ LL L++ ILD SK+EAG+M L + DF++ +E+++DL P A K VEV +
Sbjct: 325 GDALLTLIDEILDLSKLEAGEMHLEQLDFNLATTVEEIIDLLAPQAHLKSVEVASFIEEN 384
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
L ++GD +L+QIL+NL+ NA+KFT EG++ ++
Sbjct: 385 LPL---GLRGDSSRLRQILTNLIGNAIKFTEEGYVVLQ---------------------- 419
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFT--FEVDDTGKGIPKEKRKTVFENYVQV 593
+E V EN E T F V DTG GI + + +F+ + QV
Sbjct: 420 ----------------VERVT-----ENPQETTLLFSVIDTGIGIAAQNQSQLFQPFSQV 458
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL I Q LV LM G I + +E GE G+ F F V
Sbjct: 459 DSSTTREYGGTGLGLAICQQLVTLMEGKIGLESRE-GE-GSNFWFRV 503
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 20/131 (15%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KIL+A+D+ + ++VA L LG + GE AL+L ++ Y I
Sbjct: 671 KILLAEDNPVNQKVAIKQLELLGYQADIANQGEEALKLWQTH-------------AYQII 717
Query: 1060 LMDCEMPIMNGYEATRKIREEEK-------RNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
LMDC+MP+++GY+ T +IR E+ RN H IIA+TAH E+ +K + AGMD
Sbjct: 718 LMDCQMPVLDGYQVTAQIRRLEQGTGDFPVRNPRHTVIIAMTAHAMKEDREKCLAAGMDD 777
Query: 1113 HLGKPLNRDHL 1123
++ KP+ D L
Sbjct: 778 YISKPVCPDQL 788
Score = 41.2 bits (95), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 971 GEGSSRYKQTEIEEEDG--ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEAC 1028
GEGS+ + + E+++ E+ A + + +LV +S ++R V + G VE
Sbjct: 494 GEGSNFWFRVPFEKQEIPIEKLSAPREIEDLSLLVVANSEVVRMVIRDRVTRWGLQVEEI 553
Query: 1029 ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHI 1088
E GE A +++ Q + G + YD +++D EMP + G +I+++ + + I
Sbjct: 554 E-GETAFNFLQT----QWEEG----IEYDLMVIDLEMPEITGIALAEQIKQDSRFS--SI 602
Query: 1089 PIIALTA 1095
P+IA+ A
Sbjct: 603 PLIAIAA 609
>gi|427729192|ref|YP_007075429.1| ATPase [Nostoc sp. PCC 7524]
gi|427365111|gb|AFY47832.1| putative ATPase [Nostoc sp. PCC 7524]
Length = 2010
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 137/278 (49%), Gaps = 52/278 (18%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH++R L GI G ++ + + + + ++ C LL L+N ILD
Sbjct: 1537 KSEFLANMSHELRTPLNGILGYTQILRKDKILTPQQKNGVEIIHQCGEHLLTLINDILDI 1596
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK---VKGD 486
SK+EA KM+L ++F + LE +V + A +KG+ ++ P FS + D
Sbjct: 1597 SKIEARKMELCPQEFHFSQFLEGIVQICRVRAEQKGISLLYQPV------FSLPNIIYAD 1650
Query: 487 RVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNK 546
+L+QIL NLLSNA+KFT +G++ + G++
Sbjct: 1651 EKRLRQILINLLSNAIKFTKKGYVYFKV------------------GYV----------- 1681
Query: 547 KARGDLEAVNAAQRDENAMEFT-----FEVDDTGKGIPKEKRKTVFENYVQVKEGE---G 598
GD E V+ ENA E++ F V+DTG GI E+ + +F + QV E
Sbjct: 1682 TGTGDWELVSG----ENAAEYSSQKIRFYVEDTGIGIAPEQLEEIFLPFQQVGEDSLKTE 1737
Query: 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GTGLGL I + LV +MGG++++ K N G+ F ++
Sbjct: 1738 GTGLGLAISRQLVEMMGGELKV--KSNLGEGSIFWLDL 1773
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+K+LV DD+ R V L+ LG V +G G+N A P D
Sbjct: 1800 RKVLVVDDNWANRSVLLNLLQPLGFEVMEAIDG-------LDGINK-----ACEFQP-DV 1846
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
I MD M M+G+EATR++R Q +IA++A + ++ E G + L KP+
Sbjct: 1847 IFMDLVMGGMDGFEATRRLRMMPTLEQT--IVIAISASVFDFSQQQSREVGCNDFLPKPI 1904
Query: 1119 NRDHLMEAIKY 1129
+L+E +++
Sbjct: 1905 QVANLLEKLQF 1915
>gi|359784636|ref|ZP_09287805.1| signal transduction histidine kinase [Halomonas sp. GFAJ-1]
gi|359298076|gb|EHK62295.1| signal transduction histidine kinase [Halomonas sp. GFAJ-1]
Length = 748
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 155/321 (48%), Gaps = 62/321 (19%)
Query: 308 SLVHRTSKRALILLIVMTVGVLISMLTFVFKSAR---AARKEMHLCASLIKQMEAT-QQA 363
+L+ K + LLI M++ VL+ ++ F+ + R AAR+E L +Q+E T +QA
Sbjct: 182 ALLSTLYKALMTLLIGMSLAVLL-VIGFLVREMRESAAARREQE---QLSRQLEVTAKQA 237
Query: 364 ERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLL 423
+ + KS A SH+IR L G+ G+ EL E +++E ++ AN LL ++
Sbjct: 238 QAANHAKSDFLAMVSHEIRTPLNGVIGMSELLR-EPASAAQVEDYASTIHDSANQLLAMI 296
Query: 424 NSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV 483
N ILD SK+EAG + L + L++ V+ LF P A KG+++VLD D V + +
Sbjct: 297 NEILDFSKIEAGHLTLETSPTAIKPLVDSVMALFGPRAQAKGLQLVLD-IDPLVPAWVMI 355
Query: 484 KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFY 543
R L+QIL NL++NA+KFT G +++R Y
Sbjct: 356 DAGR--LRQILLNLIANAIKFTDHGKVTLR----------------------------LY 385
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GG 599
VN +FEV DTG G+ +E++ +FE + Q E GG
Sbjct: 386 AT---------VNY---------LSFEVSDTGCGLSQEQQALLFEPFQQADETVARRFGG 427
Query: 600 TGLGLGIVQSLVRLMGGDIEI 620
TGLGL I + L M G + +
Sbjct: 428 TGLGLAICKRLSEAMQGRLSV 448
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 18/158 (11%)
Query: 964 LKTGNSSGEGSSRYKQTEIEEEDGERS----QAQKPLRGKKILVADDSMMLRRVAEINLR 1019
L ++ G+GS+ Y + E S + + G +L+ +D+ + R+VA L
Sbjct: 446 LSVTSAPGQGSTFYCDLPLVEASPVSSPLPSEPTRDFTGTSLLLVEDNAVNRKVATGLLS 505
Query: 1020 HLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079
LG V ENG+ AL++++S I MD ++P M+G TRK+R
Sbjct: 506 RLGCDVVCAENGQDALEMIKSQ-------------QVHLIFMDIQLPDMDGLTVTRKLRA 552
Query: 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+PI+A+TA ++ + + AGM+ ++ KP
Sbjct: 553 VGGW-LAQVPIVAMTAGGVEDDRSRCLSAGMNDYITKP 589
>gi|348028618|ref|YP_004871304.1| periplasmic sensor hybrid histidine kinase [Glaciecola
nitratireducens FR1064]
gi|347945961|gb|AEP29311.1| periplasmic sensor hybrid histidine kinase [Glaciecola
nitratireducens FR1064]
Length = 894
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 141/281 (50%), Gaps = 53/281 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA AE+ + +KS+ AN SH+IR + GI GL+++ + P SE++ NL +++ +
Sbjct: 372 EAKLLAEKANASKSIFLANMSHEIRTPMNGIVGLVDIS-LRQNPSSEIKNNLEKISYSSQ 430
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL--DPSDG 475
L+ ++N ILD SK+EAGK+++ F L + ++ + A K +++ L DP
Sbjct: 431 ILMNVINDILDFSKIEAGKLEIENSLFSFSSLFDTLLSVSLVRASEKNLDIALYVDP--- 487
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+L + V GD ++L Q+L NL +NA KFT GHI
Sbjct: 488 -LLPINAV-GDPLRLSQVLLNLTNNATKFTHNGHI------------------------- 520
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
IS L+ ++++ G L V+ A DTG G+ ++ T+F+ + Q E
Sbjct: 521 -KISFLYTNDEQSDGFLLTVSIA--------------DTGIGLDAQQIDTIFQPFKQADE 565
Query: 596 G----EGGTGLGLGIVQSLVRLMGGDIEIVDKE-NGERGTC 631
GGTGLGL IV L+ LMGG++ + + G TC
Sbjct: 566 SISRKFGGTGLGLTIVSQLMTLMGGELSVTSELGKGSVFTC 606
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 17/140 (12%)
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
A+ G +LV D+S+ E+ LR G T + E+G A+ + AP
Sbjct: 768 AEAQFMGHVLLVEDNSINQLVAGEM-LRSFGLTFDIAEDGNQAIT---------KFTNAP 817
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
H YD ILMD +MP+++G +AT+ IRE R +PII L+A+ E+ + AGM+
Sbjct: 818 H---YDLILMDIQMPMLSGLDATKAIRE---RGYNDVPIIGLSANAMKEDYAAALAAGMN 871
Query: 1112 VHLGKPLNRDHLMEAI-KYL 1130
+L KP+ R L+ +I +YL
Sbjct: 872 EYLTKPIRRKSLLVSIERYL 891
>gi|428312486|ref|YP_007123463.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254098|gb|AFZ20057.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1949
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 148/315 (46%), Gaps = 35/315 (11%)
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAG 400
R+ L I + Q AE + KS A SH+IR A+ G+TGL+ V
Sbjct: 1145 RQREQLAEQNIALETSKQAAEAANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTEVTPQ 1204
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
+ET + LL ++N ILD SK+E+GK++L E+ F + +E+ +DL P
Sbjct: 1205 QHQFVET----IRNSGEALLTIINDILDFSKIESGKLELEEQPFKLRMCIEESLDLLAPK 1260
Query: 461 AMRKGVEVV-LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVK-- 517
A K +E+ L S V + GD +L+QIL NLLSNAVKFT G ++V K
Sbjct: 1261 AAEKELELAYLIDSQTPV----TIAGDVTRLRQILVNLLSNAVKFTRSGEVTVSVTAKGV 1316
Query: 518 -------KPSAIGNPSLSSSRHGFLQ---SISCLFYKNKKARGD-LEAVNAAQRDENAME 566
+ S NP S S Q C + R D L +V+ E
Sbjct: 1317 PVKHEVGRESVGNNPGFSISPSPNTQPQLDKPC----DPGTRQDTLSSVSVHPVPYPYYE 1372
Query: 567 FTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVD 622
F V DTG GIP E+ +F+ + QV GGTGLGL I + L +MGG I V+
Sbjct: 1373 IQFAVKDTGIGIPTERLDRLFQPFSQVDSSTSRHYGGTGLGLVISKRLCEMMGGRI-WVE 1431
Query: 623 KENGERGTCFRFNVF 637
E G +G+ F F V
Sbjct: 1432 SEVG-KGSIFYFTVI 1445
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 992 AQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
AQ L GK++L+ DD+ R++ + + G A +G AL + G +L
Sbjct: 1460 AQPQLEGKRLLIVDDNATNRKILTLQGKSWGMLTRAAHSGREALDWLSQG-----EL--- 1511
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
+D ++D +MP M+G +IR +K +P++ LT+ E +D + +
Sbjct: 1512 ----FDLAILDMQMPGMDGLTLATEIR--KKPGYQELPLVMLTSIGKPESSDPSQMSHFA 1565
Query: 1112 VHLGKPLNRDHLMEAI 1127
L KP+ + L E++
Sbjct: 1566 AFLNKPIKQSQLYESL 1581
Score = 46.2 bits (108), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 60/175 (34%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KIL+A+D+++ ++VA L+ LG + NG L+ V H YD +
Sbjct: 1613 KILLAEDNVVNQQVALHLLQRLGYRADVVGNGLEVLEAV-------------HRQSYDVV 1659
Query: 1060 LMDCEMPIMNGYEATRKIREE------------------------EKRNQVHIP------ 1089
LMD +MP M+G A +I +E E Q + P
Sbjct: 1660 LMDVQMPEMDGLTAAHRISQESSFAWELEAAGENLITAFPGVSLTETHQQSNSPTSTNRP 1719
Query: 1090 -----------------IIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
IIA+TA+ + + +EAGMD ++ KP+ L+ A+
Sbjct: 1720 PEKVPGQPNSKSNKRPRIIAMTANAMQGDREMCLEAGMDDYISKPIRMKELVRAL 1774
>gi|425767335|gb|EKV05909.1| Sensor histidine kinase/response regulator, putative [Penicillium
digitatum PHI26]
gi|425779808|gb|EKV17837.1| Sensor histidine kinase/response regulator, putative [Penicillium
digitatum Pd1]
Length = 1829
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 139/288 (48%), Gaps = 56/288 (19%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----N 413
+A QQ + +K+ F+N SH+IR L GI G I ++L+++ R+M
Sbjct: 1137 KAMQQLNHQMESKTKFFSNMSHEIRTPLNGILGTIPFIL-----DTQLDSDQRRMLDTIQ 1191
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ +L L+++ILD S+VEAGKM +++ F + ++EDV+D A+ KG+E+
Sbjct: 1192 NSSTNLRELVDNILDVSRVEAGKMSIVKSWFHIRSMIEDVIDTIASRAIDKGLEINY--L 1249
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
G L S V GDR +++Q+L NLL NAVKFT++G I
Sbjct: 1250 IGEDLP-SMVIGDRFRIRQVLINLLGNAVKFTAQGEI----------------------- 1285
Query: 534 FLQSISCLFYKNKKAR-GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
I C Y+ A D +A FEV DTGKG + + + + + Q
Sbjct: 1286 ---HICCDMYREPSANLNDTQAF-----------MNFEVVDTGKGFSSQDAERLMQRFSQ 1331
Query: 593 VKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ E G+GLGL + + LV + GG + KE +G F FNV
Sbjct: 1332 LGENGTQQNAGSGLGLFLSKQLVEMHGGKLTPSSKEG--QGAKFSFNV 1377
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+G +IL+ +D R V L + E NG +V S ++ G Y
Sbjct: 1679 KGYRILLVEDDETNRDVMLKYLDKIKLMSETASNGLECTNMVLS-----KEPGY-----Y 1728
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLG 1115
I+ D +MPI NGY+ R+IRE E+ N IPI+AL+A+ ++ + AG + ++
Sbjct: 1729 SLIICDIQMPIKNGYDTCREIREWEQMNHYPQIPIMALSANAMTDQIENAARAGFNDYVT 1788
Query: 1116 KPLNRDHL 1123
KP+ + L
Sbjct: 1789 KPIRHNEL 1796
>gi|428311153|ref|YP_007122130.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252765|gb|AFZ18724.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1152
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 143/274 (52%), Gaps = 23/274 (8%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH++R L I G +L ++ E + L + LL L+N++L
Sbjct: 644 KSRFLANMSHELRTPLNAIIGFTQLLTRDSSLNPEQQEYLGIIQRSGEHLLELINNVLQM 703
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+E G++ L + +FD+ LL+ + +F K +++V D + ++ ++ V+ D K
Sbjct: 704 SKIEVGRVTLNKNNFDLYHLLDTLEAMFKLPVQNKNLQLVFDRT-PTLPQY--VQTDESK 760
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+Q+L NLL NA+KFT+EG +++R K S N +L R S + ++ K
Sbjct: 761 LRQVLINLLGNAIKFTTEGGVTLRIASKFKSEESN-NLPVKRLNVEGSQPSSYQQHLK-- 817
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG---GTGLGLGI 606
L+ V FEV+DTG GI E+ ++FE ++Q + G GTGLGL I
Sbjct: 818 --LQPVT----------LYFEVEDTGFGIAPEEMDSLFEPFLQTQTGRQALEGTGLGLPI 865
Query: 607 VQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
+ V+LMGGDI + + +G+ F F + + I
Sbjct: 866 ARQFVQLMGGDIRV--SSHLGKGSIFHFEIEVDI 897
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD + R + L +G V NG+ A++L S PH+ I
Sbjct: 923 RILVVDDRLESRVLLVKLLASVGFEVLEAVNGQEAIELWSSW--------EPHL-----I 969
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+M+GYEAT++I+ + K I+ALTA EE + AG D + KP
Sbjct: 970 WMDMRMPVMDGYEATKRIKADLKGQAT--AIVALTASAFEEERSVVLSAGCDDFVRKPFR 1027
Query: 1120 RDHLMEAI 1127
+ E +
Sbjct: 1028 ESVIFEKM 1035
>gi|163814352|ref|ZP_02205741.1| hypothetical protein COPEUT_00503 [Coprococcus eutactus ATCC 27759]
gi|158449987|gb|EDP26982.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Coprococcus eutactus ATCC 27759]
Length = 765
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 137/290 (47%), Gaps = 48/290 (16%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q AE + K+ +N SHDIR + I G+I L AG ++ ++ + +
Sbjct: 365 IEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGIISLIRHNAGDKEKVIEYADKIAISS 424
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LLG++N +LD SK+EAGK DF + + +E++ +FH A K ++ +
Sbjct: 425 QHLLGIINDVLDMSKIEAGKTVFKYSDFSILDSIEELNTIFHSQANEKNQSFIITKGN-- 482
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
LK V GD+V L QI SNLLSNA+K+T EG G +Q
Sbjct: 483 -LKHEWVNGDKVHLMQIFSNLLSNAIKYTQEG------------------------GIIQ 517
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
I+ N G ++ F V D G G+ + ++T+F+ + +
Sbjct: 518 FIAEESETNSSTYG---------------KYHFIVSDNGMGMSADFKETIFDAFTRAESS 562
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
V GTGLG+ I ++LV MGG IE+ + N RG+ F + L I E
Sbjct: 563 VTNKIQGTGLGMAITKNLVESMGGTIEVESEPN--RGSSFEVILNLKIVE 610
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 16/154 (10%)
Query: 975 SRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAA 1034
S +Q E+ E D + L G +IL A+D+ + + L+ GA CENG+
Sbjct: 615 SSTEQIEMHETDSD------ILDGMRILCAEDNELNAEILMELLKLEGAECTICENGKRI 668
Query: 1035 LQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALT 1094
L+ + + YD ILMD +MP+MNGYEAT IR IPIIA+T
Sbjct: 669 LEAFEQSVPGE----------YDMILMDVQMPVMNGYEATEAIRRSSHEQAKTIPIIAMT 718
Query: 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
A++ E+ ++ AGM+ H+ KP++ L + I+
Sbjct: 719 ANVFSEDMQHSLAAGMNAHISKPVDMKLLKKTIR 752
>gi|374621477|ref|ZP_09694009.1| multi-sensor hybrid histidine kinase [Ectothiorhodospira sp. PHS-1]
gi|373940610|gb|EHQ51155.1| multi-sensor hybrid histidine kinase [Ectothiorhodospira sp. PHS-1]
Length = 1905
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 157/327 (48%), Gaps = 59/327 (18%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQM 412
IKQ + T AER + KS AN SH+IR + + GL EL P SE + + L ++
Sbjct: 1164 IKQAQET--AERANQAKSQFLANMSHEIRTPMNAVIGLSELLL--DTPLSEKQRDYLGKI 1219
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
+ LLG++N ILD SK+EA K++L F + +LLE + LF VA G+E+V
Sbjct: 1220 RDSSRMLLGIINDILDFSKIEADKLELERHGFRIEDLLEQMRTLFASVADNAGIELVF-- 1277
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+ + + V+GD ++L QIL+NLLSNA+KFT +G + +
Sbjct: 1278 -ELEIREPVTVEGDALRLGQILTNLLSNAIKFTEQGQVVLS------------------- 1317
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
++ + C ++ + F+V DTG GI E++ +F+ + Q
Sbjct: 1318 --IRQLGCT--------------------DDHLRLHFQVSDTGIGITAEQQSRLFQPFSQ 1355
Query: 593 VKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI----REAS 644
GGTGLGL I + L+ MG D+++ + + G+ F F + L + ++
Sbjct: 1356 ADTSTTRKYGGTGLGLVICRKLLEKMGADLKL--ESIPDTGSTFHFELTLPLAPDQHPSA 1413
Query: 645 ANDNNTQGEKELAGGDSAAGDTQLQHM 671
+D G + L D A T L +M
Sbjct: 1414 VHDLLQPGARVLVVDDHEAARTVLVNM 1440
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
G+ +L+ +D+ + + VA L G V +G AL V P
Sbjct: 1568 FEGRTVLLVEDNALNQEVARGILNKTGIRVLLANDGREALAQVTQ-------------YP 1614
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +LMD +MP+M+G+EA ++R++ +PIIAL+A + ++ + AGM+ HL
Sbjct: 1615 VDLVLMDLQMPVMDGFEAASRMRQQFP----DLPIIALSAAVMEDDRHRARAAGMNDHLA 1670
Query: 1116 KPLNRDHLMEAIK 1128
KP++ L+ ++
Sbjct: 1671 KPIDSRALLSTME 1683
>gi|427416794|ref|ZP_18906977.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425759507|gb|EKV00360.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 683
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 136/280 (48%), Gaps = 54/280 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS--ELETNLRQMNVCA 416
A + AE + KS AN SH++R L I G E+ EA S + +T+L ++
Sbjct: 312 AKESAEASTQAKSEFLANMSHELRTPLNAIIGYSEMLAEEAEDLSVEDAQTDLYRIQDAG 371
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL L+NS+LD SK+E+G+M+L E+F + L+E V D+ +P+ +KG ++++
Sbjct: 372 KQLLTLINSVLDLSKIESGRMELFIEEFSISFLVEQVADVLNPLIQKKGNKLIVHQGANV 431
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
L + D K+ Q L NLLSNA KFT +G I++ ++ SS G
Sbjct: 432 DL----ISADHSKVHQSLLNLLSNANKFTQDGTIAL-------------TVKSSMEG--- 471
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
D+ ++F V DTG G+ E++K VFE + Q
Sbjct: 472 ------------------------DQPWIDFI--VTDTGIGMTSEQQKKVFEAFAQADSS 505
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GGTGLGL I + +MGGDI + + +RG+ F
Sbjct: 506 TTRQFGGTGLGLTITKQFASMMGGDITV--ESQSDRGSQF 543
>gi|42524788|ref|NP_970168.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
HD100]
gi|39576998|emb|CAE78227.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
HD100]
Length = 734
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 154/320 (48%), Gaps = 65/320 (20%)
Query: 317 ALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFAN 376
A +L+IV V M F + R K++ +EA +A + S KS AN
Sbjct: 194 AFLLIIVAYV-----MTEFEGRQRRQLEKQL---------VEARNEALQASHMKSSFLAN 239
Query: 377 ASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGK 436
SH+IR + GI G+ E+ ++ P S ++ ++ + A +LL L+N ILD SK+E+GK
Sbjct: 240 MSHEIRTPMNGILGMTEVL-LDQNPESGIKKKIQIIRESALNLLSLINGILDLSKIESGK 298
Query: 437 MQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSN 496
++L E F+ +L+++V++ A KG+++ S+ + FS GD ++L+QIL N
Sbjct: 299 LELEESYFEPRKLVQEVINTVEYSAKSKGLDLHASVSEQTPAAFS---GDVLRLRQILIN 355
Query: 497 LLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVN 556
LL NA+KF+SEG +S+ VN
Sbjct: 356 LLGNAIKFSSEGTVSL-----------------------------------------IVN 374
Query: 557 AAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVR 612
+ + D++ +V D G G+ + K +F + Q + GGTGLGL I + LV
Sbjct: 375 SFRSDQSRTMLQIQVKDQGLGMDEATLKKIFSPFEQADKSTTRKFGGTGLGLSITKQLVE 434
Query: 613 LMGGDIEIVDKENGERGTCF 632
LM G IE+ K N G+ F
Sbjct: 435 LMNGKIEVESKPN--EGSIF 452
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 16/143 (11%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
E S +Q PL KILVA+D+M + V + L LG + NG+ AL+ SG
Sbjct: 472 ESQSYSSSQAPL---KILVAEDNMTNQEVVRVMLNRLGHKFDIVNNGKEALEKTLSG--- 525
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
YD ILMDC MP+M+GY A +KI E + +IA+TA+ + +
Sbjct: 526 ----------TYDIILMDCHMPVMDGYVAAQKITERFPQWCQGPAVIAVTANAIRGDKEA 575
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAI 1127
+ AGM +L KPL L E +
Sbjct: 576 CLAAGMCDYLSKPLTLAELDEKL 598
>gi|359438408|ref|ZP_09228433.1| sensor protein [Pseudoalteromonas sp. BSi20311]
gi|358026901|dbj|GAA64682.1| sensor protein [Pseudoalteromonas sp. BSi20311]
Length = 908
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 143/296 (48%), Gaps = 54/296 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A Q ++ + KS AN SH+IR L + G L E P + L L ++N+ +
Sbjct: 526 VKAKQHSDLANQAKSRFLANMSHEIRTPLNAVIGFSTLAKNEESPET-LSDYLNKINLAS 584
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
N LL L+N +LD SK+E+ K+ L FD+ LL + +F A +KG+ +D +
Sbjct: 585 NSLLSLINDVLDISKIESQKLTLEVAPFDLNALLARISSMFEQSAEQKGINWKVDNQLPT 644
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ F +GD ++++QIL NL SNA+KFT EG +S+ A K+ ++ RH
Sbjct: 645 DIWF---EGDVMRIEQILLNLCSNAIKFTYEGEVSISAYSKE--------IADKRH---- 689
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+ T + D+G GI ++ +F+ + Q
Sbjct: 690 -----------------------------QITLAIRDSGIGIAASEQSKLFDAFTQADSS 720
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL---AIREASA 645
GGTGLGL I + L LM GDI+ V E G +G+ F +V L A+++ +A
Sbjct: 721 TSRKFGGTGLGLAIAKELSLLMSGDIK-VQSEPG-KGSTFTLSVELNTCAVQQVTA 774
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 20/169 (11%)
Query: 964 LKTGNSSGEGSSRYKQTE-----IEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINL 1018
+K + G+GS+ E +++ + SQ L KILVA+D+ + + V + L
Sbjct: 746 IKVQSEPGKGSTFTLSVELNTCAVQQVTAKHSQQHVDLSKLKILVAEDNSVNQLVIKAML 805
Query: 1019 RHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078
LG T ENGE A++ V+ +ND +D +LMDC+MP+M+GY+AT IR
Sbjct: 806 SSLGITPTLVENGELAVEQVK--IND-----------FDLVLMDCQMPVMDGYQATALIR 852
Query: 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ + Q +P+IALTA + E+ + G + HL KPL D L + +
Sbjct: 853 KTKSAEQ--LPVIALTADVMPEDKANALAIGFNEHLAKPLELDKLTQCL 899
>gi|334342915|ref|YP_004555519.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
L-1]
gi|334103590|gb|AEG51013.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
L-1]
Length = 766
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 53/284 (18%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R A E +++ + A + AE S K+ AN SH+IR + GI G +L + AG
Sbjct: 266 RDASGEPDFFVCVVEDIGARRSAEMASAAKTGFLANMSHEIRTPMNGILGFADL-LLGAG 324
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
+ ++ + ++ LLN ILD SKVEAG+M++ E FD+ L+ ++L
Sbjct: 325 LPPDQHRQVKMIADSGRAMMRLLNDILDLSKVEAGQMEIAREPFDLVHALDACLNLVRVG 384
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
A +KG++++ D +D V GD ++L+Q++ NLL NAVKFTSEGH+++R +
Sbjct: 385 AEQKGIDLIRDIADDLP---RTVTGDGLRLRQVVLNLLGNAVKFTSEGHVALRVHL---- 437
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
+ A V+D+G GI
Sbjct: 438 -----------------------------------------DGADRLVIVVEDSGPGIAP 456
Query: 581 EKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEI 620
E++ +FE +VQ G GG+GLGL I LV LM G++ +
Sbjct: 457 ERQAAIFEKFVQADAGTAARFGGSGLGLSISAQLVTLMNGELTL 500
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LVA+D + + + L +G + E+G A+ V R GAP YD +
Sbjct: 541 RVLVAEDHDVNQELVRAMLERIGCSATIVEDGAQAVAAVLRA----RGEGAP----YDIM 592
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD +MP+M G +A R IR + +PI+ALTA+ GE+ ++ AGM HL KPL
Sbjct: 593 LMDMQMPVMGGLDAARAIRAQGVSAH-ELPILALTANAFGEDVHASLAAGMQAHLAKPLQ 651
Query: 1120 RDHLMEAI 1127
L A+
Sbjct: 652 LAELRRAL 659
>gi|409197665|ref|ZP_11226328.1| putative two-component system sensor protein [Marinilabilia
salmonicolor JCM 21150]
Length = 1424
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 51/289 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I+ +A + AE + KS A SH+IR L I G L +G + + L+++
Sbjct: 760 IELQKAKEAAENATRAKSDFLARMSHEIRTPLNAIIGWTHLGLENSGFRGQSDY-LKRIQ 818
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LLG++N ILD SK+EAG+++L DFD+ ++L+++ D+ A K +E+V D
Sbjct: 819 SSSRSLLGIINDILDFSKIEAGRLELEYIDFDLEQVLQNLADMVLFRANEKNLELVFDID 878
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
L GD ++L+Q+L NL++NAVKFT +GH++V+ SL SS
Sbjct: 879 PKVPLSLV---GDPLRLEQVLINLVNNAVKFTDKGHVNVKI-----------SLKSS--- 921
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY--- 590
+ E F V+DTG G+ +E++ +F+ +
Sbjct: 922 ---------------------------ESEKTELLFAVEDTGIGLKEEQKNNLFKAFSQA 954
Query: 591 -VQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
V GG+GLGL I + + ++MGG+I V+ + G +G+ F F F+
Sbjct: 955 DVSTTRKYGGSGLGLAICKRITQMMGGEI-WVESDYG-KGSTFFFTAFI 1001
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 23/160 (14%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACEN 1030
G YK I+EE PL K+L+ +D+ R + L T + N
Sbjct: 1154 GSKKKNYKDLLIKEE---------PL---KLLMVEDNDTNRELTRELLAMANITTDLAVN 1201
Query: 1031 GEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPI 1090
G+ AL L R + PYD +LMD MP MNGY ATR+++ E N+V P+
Sbjct: 1202 GQEALDLAREQEGN---------CPYDLVLMDIHMPGMNGYTATRRMKRIEGWNEV--PV 1250
Query: 1091 IALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+A+TA G+ ++ ++AGM + KP++ D L I L
Sbjct: 1251 VAMTAEALGDVENQCLQAGMTGLVAKPIDPDDLFRVIYRL 1290
>gi|381160280|ref|ZP_09869512.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380878344|gb|EIC20436.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1306
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 144/291 (49%), Gaps = 53/291 (18%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
IKQ A + AER + +KS AN SH+IR + + GL +L + S+ L ++
Sbjct: 557 IKQ--AQEAAERANRSKSQFLANMSHEIRTPMNAVIGLSDLL-LHTPLDSKQRDYLGKIR 613
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ LLG++N ILD SK+EAGK++L + F + +LL+ + LF A G+E++ +
Sbjct: 614 NSSRMLLGIINDILDYSKIEAGKLELESQSFRLEDLLDQMRTLFAAAADASGIELIFEL- 672
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ ++GD ++L Q+L+NLLSNA+KFT G +++ +I LS++
Sbjct: 673 --DIHHPRTLEGDALRLAQVLTNLLSNAIKFTERGQVTL--------SIREQGLSNAE-- 720
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
M+ TF V DTG GI +++ +F+ + Q
Sbjct: 721 -------------------------------MQLTFAVRDTGIGIEPAQQERLFKAFSQA 749
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I Q L+ MGG++ + + +G+ F F + L +
Sbjct: 750 DSSTTRKYGGTGLGLVISQRLIERMGGELRVESRPG--QGSTFSFTITLPV 798
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 18/134 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+ +L+ +D+ + + VA + + ENG A+ LV D
Sbjct: 962 QTVLLVEDNALNQEVACAIMEKTQVRIILAENGREAVDLVSQH-------------KVDL 1008
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
ILMD +MP+M+G+EA+R+IR + +PI+AL+A + E+ + AGM+ HL KP+
Sbjct: 1009 ILMDLQMPVMDGFEASRRIRP----HFPELPIVALSAAVMEEDRARAQAAGMNDHLAKPI 1064
Query: 1119 NRDHLMEAI-KYLH 1131
+ L+ + K+LH
Sbjct: 1065 DSHALISTLKKWLH 1078
>gi|434400626|ref|YP_007134630.1| response regulator receiver sensor hybrid histidine kinase
[Stanieria cyanosphaera PCC 7437]
gi|428271723|gb|AFZ37664.1| response regulator receiver sensor hybrid histidine kinase
[Stanieria cyanosphaera PCC 7437]
Length = 731
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 146/308 (47%), Gaps = 54/308 (17%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R + L S+ + +A +AE+ + +KS AN SH++R + I G E+ EA
Sbjct: 197 RVQERTAELARSITEAEKARTEAEKANQSKSTFLANMSHELRTPMNAIIGYSEMLMEEAE 256
Query: 401 P-GSE-LETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFH 458
G E +L +++ A LL L+N ILD SK+EAG+M+L E F+V L+EDVV
Sbjct: 257 DLGQEDFLPDLHKIHGAAKHLLSLINDILDLSKIEAGRMELYPEHFEVRNLVEDVVATIQ 316
Query: 459 PVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK 518
P+ + G + +D D + D +K++Q L NLLSN+ KFT G I+++
Sbjct: 317 PLVEKNGNHLKIDLPDN----LGTMHTDLIKIRQSLFNLLSNSCKFTENGTITLKV---- 368
Query: 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
L+S H + +V DTG G+
Sbjct: 369 -----ERYLNSGHHW---------------------------------LSLQVKDTGIGM 390
Query: 579 PKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
E+ +F+ + Q GGTGLGL I + ++MGGDI +V+ + G +G+ F
Sbjct: 391 SPEQLSRLFQAFTQADASTTRKYGGTGLGLAITKRFCQMMGGDI-VVESQFG-KGSTFTI 448
Query: 635 NVFLAIRE 642
++ + +++
Sbjct: 449 HLPIEVKK 456
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 15/95 (15%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LV +D R + L G V A ENG AL+ + +L P D I+
Sbjct: 600 VLVVEDDDNTREIIARQLIKEGWQVTAVENGRKALEAI--------NLQTP-----DLII 646
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA 1095
D MP M+G+E ++R++E+ +P++ LTA
Sbjct: 647 SDLMMPEMDGFELIHELRQQEQLRS--LPVVVLTA 679
>gi|160877018|ref|YP_001556334.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|378710232|ref|YP_005275126.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
gi|160862540|gb|ABX51074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|315269221|gb|ADT96074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
Length = 1238
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 143/293 (48%), Gaps = 53/293 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q AE ++ KS AN SH+IR + I G+++L ++ + L + A
Sbjct: 709 LEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTAQQKDYLEKAGFSA 767
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DPSDG 475
LL ++N ILD SK+EAGK++L F + ++L+ +DL A +GVE++L P
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNSLKAQEQGVELLLYAPVTA 827
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ +KGD ++L Q+L NLLSNAVKFT G I
Sbjct: 828 GLI----LKGDPLRLGQVLINLLSNAVKFTQSGEI------------------------- 858
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK- 594
+L + +RD + + F V DTG GI K+++ +F+ + Q
Sbjct: 859 ---------------ELGCEDVGERD-HRITLKFWVRDTGIGIGKDQQDKLFDAFAQADG 902
Query: 595 ---EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + LV +MGG ++ V E G G+ F F + I EA+
Sbjct: 903 STTRKYGGTGLGLSISKHLVSMMGGKMQ-VQSELG-VGSTFSFTISFEIAEAA 953
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 23/150 (15%)
Query: 980 TEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR 1039
E++ EDGE + +L+ +D+ + ++VA L+ G V NG+ AL +
Sbjct: 1101 VEVQVEDGEHTGL--------VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTID 1152
Query: 1040 SGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG 1099
S P+D +LMD +MP+M+G A R +RE + +PIIA+TAH
Sbjct: 1153 SR-------------PFDAVLMDIQMPVMDGLTAARALRERFSADD--LPIIAMTAHAMS 1197
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
+ +K++ AGM+ H+ KP+ + L E + +
Sbjct: 1198 GDREKSLAAGMNAHITKPIVLNELFETLNH 1227
>gi|302878536|ref|YP_003847100.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302581325|gb|ADL55336.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 872
Score = 119 bits (299), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 134/274 (48%), Gaps = 52/274 (18%)
Query: 350 CASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
A L+ +A + A R KS+ ++ SH++R L I G L + NL
Sbjct: 398 TADLVLARDAAEAANRA---KSVFLSSMSHELRTPLNAILGFSALMSRDTMLSHIQRENL 454
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
+N LL L+N +L+ +K+EAG++Q++ E FD+G L+ DV D+ A KG++++
Sbjct: 455 NIINRSGEHLLSLINDVLEMAKIEAGRVQVLHEAFDLGALVRDVSDMMAVRAQEKGLQLL 514
Query: 470 LDPSDGSVLKFSK-VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
+D S F + + GD +L+Q+L NL+ NAVKFT G I++R +K P+L
Sbjct: 515 VDQSS----DFPRYIMGDEARLRQVLINLVGNAVKFTQHGGITMRFGIK-------PNLL 563
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
R EV+D+G GI E ++ +F+
Sbjct: 564 PER-----------------------------------LLIEVEDSGIGIKPEDQQRIFD 588
Query: 589 NYVQVKE--GEGGTGLGLGIVQSLVRLMGGDIEI 620
+VQ+ + + GTGLGL I + V+LMGG I +
Sbjct: 589 AFVQIGDLSAQKGTGLGLTITRQFVQLMGGVITL 622
Score = 47.4 bits (111), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL+ +D + + + + LG V ENG +++ H P D I
Sbjct: 668 RILIVEDQLENQLLMSRLMEQLGFEVRVAENGRLGVEI----------FSRWH--P-DLI 714
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP+M+G EATR IR +V I+A+TA E+ + +++GMD + KP
Sbjct: 715 WMDRRMPVMDGIEATRLIRGLPGGREV--KIVAVTASAFMEQRAEMLDSGMDEFVRKPYR 772
Query: 1120 RDHLMEAI 1127
+ + E +
Sbjct: 773 FNEIYECL 780
>gi|330799381|ref|XP_003287724.1| hypothetical protein DICPUDRAFT_151857 [Dictyostelium purpureum]
gi|325082285|gb|EGC35772.1| hypothetical protein DICPUDRAFT_151857 [Dictyostelium purpureum]
Length = 1225
Score = 119 bits (299), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 146/303 (48%), Gaps = 37/303 (12%)
Query: 345 KEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIE-LCYVEAGPGS 403
K + C + Q A + E +K++ SH++R LAGI G+ LC
Sbjct: 387 KWIGTCTDVNDQKTAQDRIENAEKSKAIFLQTMSHEMRTPLAGIMGINSWLCTSSPQLSG 446
Query: 404 ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
E + +CA LL L+N+ILD SK+E K+ L E +F +++ED VD+ A +
Sbjct: 447 EQLDGCHTIEMCAEALLVLINNILDLSKLEENKIILEETEFYPSKIVEDSVDILSSQAEQ 506
Query: 464 KGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG 523
K ++++ S+ KV GD +++Q+L+NL+SN+VKFT G C +
Sbjct: 507 KRLDIIFQLKYKSL---PKVVGDFYRIRQVLTNLISNSVKFTPPGGQVTVGC-----EVY 558
Query: 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAM------EFTFEVDDTGKG 577
+ +++R R L+++ D+ + + F V D G G
Sbjct: 559 QETGTTTR----------------KRSSLDSIEITSHDQKIVVPGKYGKLLFWVIDNGIG 602
Query: 578 IPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFR 633
IP+E R+ +F+ + Q GG+GLGL I + L +L+GGDI + + G +G+ F
Sbjct: 603 IPEEGREKLFQTFSQYDASTTRKYGGSGLGLAISKRLTQLLGGDIWF-ESQKG-KGSSFH 660
Query: 634 FNV 636
F V
Sbjct: 661 FLV 663
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 22/193 (11%)
Query: 941 LLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDG--ERSQAQKPLRG 998
LL S + + ++ N ++ + G++S + + + + + D E + + PL
Sbjct: 1035 LLPQQQHSPQNNSQPLIINNHIINQDGSNSNTNQKKRRNSVVSDTDIPIEMTAVRYPL-- 1092
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEA---CENGEAALQLVRSGLNDQRDLGAPHILP 1055
KI+VA+DS + + VA L LG E NG+ A+ + +I
Sbjct: 1093 -KIMVAEDSQVNQIVASRFLTKLGYKKEEIVFVVNGQQAIDYID------------NIEM 1139
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D ILMD +MP ++G EAT +IR + H II LTA E+ DK + +GM +L
Sbjct: 1140 VDVILMDMQMPELDGCEATSRIRIKYPTTGPH--IIGLTAFCFNEDKDKCLLSGMCHYLS 1197
Query: 1116 KPLNRDHLMEAIK 1128
KP+ D L +K
Sbjct: 1198 KPVKLDVLAVELK 1210
>gi|421089680|ref|ZP_15550484.1| 7TM diverse intracellular signaling [Leptospira kirschneri str.
200802841]
gi|410001504|gb|EKO52100.1| 7TM diverse intracellular signaling [Leptospira kirschneri str.
200802841]
Length = 820
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 51/284 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 422 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 480
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL P+A +K ++ L+
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRLE-GKSE 539
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ ++ V GD ++L+QIL NL N +KFT+ G + ++ K S
Sbjct: 540 IQEY--VYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 581
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+D ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 582 -----------------------KDGVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 616
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GG+GLGL I + L+ L GG +++ + + GE G+ F F +
Sbjct: 617 TARKFGGSGLGLSITKQLIELQGGVLKL-ESQEGE-GSKFTFTI 658
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 31/173 (17%)
Query: 963 LLKTGNSSGEGSSRYKQT---------EIEE-------EDGERSQAQKPLRGKKILVADD 1006
+LK + GEGS ++ T EIE+ +D E+S + +ILVA+D
Sbjct: 641 VLKLESQEGEGS-KFTFTIDYDIPSILEIEKILEAEKTKDLEKSFQDVVSKSTRILVAED 699
Query: 1007 SMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP 1066
+ + E L+ LG NG ++ R L +D ILMD MP
Sbjct: 700 NETNCLLIERALKKLGYDPTVVHNGREVIE--RMQLE-----------TFDIILMDIHMP 746
Query: 1067 IMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
++G EAT+ IR + + ++ I IIALTA +K I GM+ L KPL+
Sbjct: 747 EVDGIEATKWIRSKNQNSKFPI-IIALTADAIESSREKYISKGMNDCLTKPLD 798
>gi|350559909|ref|ZP_08928749.1| histidine kinase [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349782177|gb|EGZ36460.1| histidine kinase [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 751
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 139/293 (47%), Gaps = 56/293 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE + KS+ AN SH++R L I G L ++G ++L L +
Sbjct: 281 ARDRAEAANRAKSVFLANMSHELRTPLNAILGFAHLAKHDSGATAQLREYLDFVQRNGAH 340
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE--VVLDPSDGS 476
LL L+N +LDT+K+E+G++ L E D+ LL+DV D+ P A +G+E V DP+
Sbjct: 341 LLSLINDVLDTAKIESGRLTLEESTVDLPSLLDDVADMLRPRANERGLELSVFRDPA--- 397
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ ++ D KL+QIL NL SNAVK++ G + + A +P
Sbjct: 398 --LPAHIRSDGRKLQQILINLASNAVKYSDRGEVRIAARSIQP----------------- 438
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
RG + +E T V D G+GI E +FE + QV +G
Sbjct: 439 ------------RG----------GQAVLEIT--VTDQGRGIDDEAIARIFEPFYQV-DG 473
Query: 597 EG---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
G GTGLGL I + V LMGG+I + + G+ RF V L + +A +
Sbjct: 474 AGPTEGTGLGLPITRQFVELMGGEISV----ESQPGSGSRFTVRLPLEKARPD 522
Score = 48.9 bits (115), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LVADDS R + L G +V +G A+Q ND PH ++
Sbjct: 544 RVLVADDSDANRLLLVRLLEGAGFSVRQAADGREAVQ----QFNDWH----PH-----FV 590
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MP M+G+EA R IR+ ++ I ALTA IS ++ + +G L KP
Sbjct: 591 WMDIRMPEMDGHEAARLIRKAADGDKT--VIAALTASISTDDQAQVFASGCVALLRKPFQ 648
Query: 1120 RDHLMEAIK 1128
+ E ++
Sbjct: 649 PHQIFETMR 657
>gi|302784310|ref|XP_002973927.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii]
gi|300158259|gb|EFJ24882.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii]
Length = 320
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 145/293 (49%), Gaps = 35/293 (11%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
+ Q AE S KS AN SH+IR + GI G+ L + E + N+ ++ CA
Sbjct: 59 SKQAAELASQAKSDFLANMSHEIRTPIHGILGMSALV-LGTSLTDEQKENMTTVSECAEL 117
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++NSILD K+EAG+ ++ F++ +L+ V + P A + + + D +V
Sbjct: 118 LLHIINSILDLGKIEAGRFEVELISFNLHHVLKSTVHILQPRAQAHNLRLSYEI-DSAVP 176
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+F + GD KL+Q L NL+ NA+KFT EG + V V + + LS
Sbjct: 177 EF--LVGDSGKLRQCLLNLVGNALKFTPEGEVRVEVSVHRFGMQDDSVLSR--------- 225
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VK 594
+NA+Q + + E E+ D+G GI K K K VF+ + Q +
Sbjct: 226 ----------------LNASQWSDMS-EMMLEISDSGIGISKNKLKDVFKPFTQADASIS 268
Query: 595 EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
GGTGLGL +VQ V LMGG I +V+ E G+ + + +L +E +A +
Sbjct: 269 RLYGGTGLGLCVVQRFVELMGGHI-LVESEYGKGSSFYIVLPYLLNKEGAAQE 320
>gi|398340376|ref|ZP_10525079.1| histidine kinase response regulator hybrid protein [Leptospira
kirschneri serovar Bim str. 1051]
Length = 804
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 51/284 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 406 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 464
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL P+A +K ++ L +G
Sbjct: 465 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRL---EGK 521
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD ++L+QIL NL N +KFT+ G + ++ K S
Sbjct: 522 SEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 565
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+D ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 566 -----------------------KDGVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 600
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GG+GLGL I + L+ L GG +++ + + GE G+ F F +
Sbjct: 601 TARKFGGSGLGLSITKQLIELQGGVLKL-ESQEGE-GSKFTFTI 642
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++ R L
Sbjct: 662 KDLEKSFQDVVSKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE--RMQLE- 718
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 719 ----------TFDIILMDIHMPEVDGIEATKWIRSKNQNSKFPI-IIALTADAIESSREK 767
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 768 YISKGMNDCLTKPLD 782
>gi|119509388|ref|ZP_01628537.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
gi|119466002|gb|EAW46890.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
Length = 1508
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 142/295 (48%), Gaps = 77/295 (26%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRA---ALAGITGLIELCYVEAGPGSELETNLRQ---- 411
A Q+AE S KS AN SH+IR A+ G+TGL+ LETNL +
Sbjct: 873 ARQEAELASQAKSAFLANMSHEIRTPMNAVLGMTGLL------------LETNLNREQRD 920
Query: 412 ----MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE 467
+ + + LL L+N ILD SK+EAG+M L DFD+ +E+V++L P A ++ +E
Sbjct: 921 FAETIRISGDALLCLINEILDLSKLEAGEMFLETLDFDLSTCVEEVLELLAPQAHKQELE 980
Query: 468 VVLDPSDGSVLKFSKV--KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP 525
+ G + + V +GD +L+QIL NL+ NA+KFTS G I VRA +
Sbjct: 981 IA-----GLIHRNVPVHLQGDASRLRQILMNLVGNAIKFTSTGEIVVRAEL--------- 1026
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
LS + N + F V DTG GI E +
Sbjct: 1027 -LSQT-------------------------------PNTVTIHFSVTDTGIGISSEDQNK 1054
Query: 586 VFENYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+F+ + QV GGTGLGL I Q LV LMGG I V+ + G +G+ F F +
Sbjct: 1055 LFQPFTQVDASITRKYGGTGLGLAISQQLVSLMGGTIG-VNSQLG-KGSQFWFKL 1107
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 79/130 (60%), Gaps = 16/130 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KIL+A+D+++ ++VA L++LG + NG+ LQL+ +PYD I
Sbjct: 1275 KILIAEDNLVNQKVALKQLQNLGYEADVAANGQEVLQLLDR-------------IPYDLI 1321
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMDC+MP+++G E TR+IR R V +IA+TA+ E+ ++AGM+ +L KP+N
Sbjct: 1322 LMDCQMPVLDGLETTREIRRRIHRQPV---VIAMTANAMKEDQQICLDAGMNDYLSKPVN 1378
Query: 1120 RDHLMEAIKY 1129
++ L AI++
Sbjct: 1379 KEKLARAIEH 1388
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L +++LV DD+ R++ H G V+ + AL +++ A +
Sbjct: 1125 LTHRRLLVVDDNATNRKIIYHQATHWGMQVDEAASAVQALNTLQTA--------AETGMR 1176
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQV--HIPIIALTAHISGEEADKTIEAGMDVH 1113
YD L+D +MP ++G +I K N + IP+I LT+ EE K + G +
Sbjct: 1177 YDLALIDMQMPQVDGLTLGTQI----KANPLIADIPLIMLTSTNQREEVQKALNIGFVSY 1232
Query: 1114 LGKPLNRDHLMEAI 1127
L KP+ L++ I
Sbjct: 1233 LVKPVKASRLLDTI 1246
>gi|254412177|ref|ZP_05025952.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196181143|gb|EDX76132.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1263
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 145/298 (48%), Gaps = 24/298 (8%)
Query: 359 ATQQAERKSMN---KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
A ++A+R + KS N SH++R L GI G +L + + NL ++ C
Sbjct: 740 AVREAKRSEIANRAKSEFLTNMSHELRTPLNGILGYAQLLKQDTTLTNPQHHNLNIIHQC 799
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV---VLDP 472
LL L+N ILD +K+EA KM+L +F + L + DLF A +K + VL P
Sbjct: 800 GEHLLTLINDILDLAKIEAQKMELYPTEFHLPNFLHSLADLFQLRAQQKDIIFTYQVLSP 859
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK----PSAIGNPSLS 528
V+ D +L+Q+L NLLSNA+KFT G ++ V SA N ++
Sbjct: 860 LPNGVI------ADNKRLRQVLCNLLSNAIKFTDRGEVTFTVSVVNRTDVKSACRNSAVE 913
Query: 529 S--SRHGFLQSISCLFYKNKKARGDLEAVNA-AQRDENAMEFTFEVDDTGKGIPKEKRKT 585
S S+ GF +++ V + +D++ F++ DTG GI +
Sbjct: 914 SKLSQSGFCTNLTSNSQNQVPKPTPTNPVYSRLAKDQHCKTIRFQIKDTGVGIDLSQLTK 973
Query: 586 VFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
+F + QV + GTGLGL I Q L++LMG +I++ K +G+ F F++ L +
Sbjct: 974 IFLPFHQVSDHSHATEGTGLGLAISQKLIQLMGSEIKV--KSIPGKGSTFWFDINLPL 1029
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+K+++ DD+ + R + L+ LG + +G LQ V D
Sbjct: 1052 RKLMIVDDNRVNRTLLRAMLKPLGFEIIEAVDGLDCLQKVVESYPD-------------L 1098
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
IL+D MP M+G E TR++ + I IAL+A + + +++ AG L KP+
Sbjct: 1099 ILIDLVMPEMDGLETTRRMLALPQLQDKDIVAIALSASVYPQIQQESLAAGCRGFLAKPV 1158
Query: 1119 NRDHLMEAI 1127
L++AI
Sbjct: 1159 ESQQLLDAI 1167
>gi|126172786|ref|YP_001048935.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
gi|386339558|ref|YP_006035924.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
gi|125995991|gb|ABN60066.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
gi|334861959|gb|AEH12430.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
Length = 1238
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 143/293 (48%), Gaps = 53/293 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q AE ++ KS AN SH+IR + I G+++L ++ + L + A
Sbjct: 709 LEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTAQQKDYLEKAGFSA 767
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DPSDG 475
LL ++N ILD SK+EAGK++L F + ++L+ +DL A +GVE++L P
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTA 827
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ +KGD ++L Q+L NLLSNAVKFT G I
Sbjct: 828 GLI----LKGDPLRLGQVLINLLSNAVKFTQSGEI------------------------- 858
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK- 594
+L + +RD + + F V DTG GI K+++ +F+ + Q
Sbjct: 859 ---------------ELGCEDVGERD-HRITLKFWVRDTGIGIGKDQQDKLFDAFAQADG 902
Query: 595 ---EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + LV +MGG ++ V E G G+ F F + I EA+
Sbjct: 903 STTRKYGGTGLGLSISKHLVSMMGGKMQ-VQSELG-VGSTFSFTISFEIAEAA 953
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 23/150 (15%)
Query: 980 TEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR 1039
E++ EDGE + +L+ +D+ + ++VA L+ G V NG+ AL +
Sbjct: 1101 VEVQVEDGEHTGL--------VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTI- 1151
Query: 1040 SGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG 1099
D R P+D +LMD +MP+M+G A R +RE + +PIIA+TAH
Sbjct: 1152 ----DSR--------PFDAVLMDIQMPVMDGLTAARALRERFSADD--LPIIAMTAHAMS 1197
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
+ +K++ AGM+ H+ KP+ + L E + +
Sbjct: 1198 GDREKSLAAGMNAHITKPIVLNELFETLNH 1227
>gi|449445312|ref|XP_004140417.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
Length = 1004
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 149/326 (45%), Gaps = 46/326 (14%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----N 413
E +AE + KS A SH+IR + GI G++ L +EL + R
Sbjct: 369 ELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLL-----DTELSSTQRDYAQTAQ 423
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
C L+ L+N +LD +K+EAGK++L FD+ +L+DV+ LF + KGVE+ + S
Sbjct: 424 ACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVS 483
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI----------- 522
D V GD + +Q+++NL+ N+VKFT GHI V+ + + S +
Sbjct: 484 DKVP---EIVMGDPGRFRQVITNLVGNSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHVN 540
Query: 523 GNPS--LSSSRHGFLQSISCLFYKNKKARGDL--------------EAVNAAQRDENAME 566
GN S ++H F +++S + + D + A + +
Sbjct: 541 GNSEDGASHNKHQF-ETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNEISDIVT 599
Query: 567 FTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVD 622
V+DTG GIP + VF ++Q GGTG+GL I + LV LMGG I V
Sbjct: 600 VMISVEDTGIGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVS 659
Query: 623 KENGERGTCFRFNVFLAIREASANDN 648
K + G+ F F E A N
Sbjct: 660 KP--QVGSTFSFTAVFGRCEKKATVN 683
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 29/149 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GKKILV DD+ + RRVA L+ GA VE E+G+AAL L L PH
Sbjct: 856 LCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALAL----------LQLPH--S 903
Query: 1056 YDYILMDCEMPIMNGYEATRKIR-----------------EEEKRNQVHIPIIALTAHIS 1098
+D MD +MP M+G+EATR+IR E ++++ H+PI+A+TA +
Sbjct: 904 FDACFMDIQMPEMDGFEATRRIRMMESKENEVLIRESNGKENARKDEWHVPILAMTADVI 963
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
D+ ++ GMD ++ KP ++L +A+
Sbjct: 964 HATYDECLKCGMDGYVSKPFEEENLYQAV 992
>gi|291523435|emb|CBK81728.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
Length = 731
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 154/347 (44%), Gaps = 69/347 (19%)
Query: 318 LILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMN-------- 369
ILL+ + IS L+ + A ++ L +K+ME Q +K+ N
Sbjct: 259 FILLLFAGLFYSISRLSLADQKAEYEKRNNELHLQTMKEMEVVNQKLKKAKNVATEALQT 318
Query: 370 -------KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
K+ +N SHDIR + I G+ L +AG +++ ++++ + LLG+
Sbjct: 319 AENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRHDAGNKAKVIEYADKIDISSQHLLGI 378
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N +LD SK+EAGK DF + +L++++ +FH K + + + ++
Sbjct: 379 INDVLDMSKIEAGKTVFKYSDFSILDLVQELNTIFHSQIYEKQQTLTIIKEN---IQHEW 435
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEG---HISVRACVKKPSAIGNPSLSSSRHGFLQSIS 539
V GD+V L QI SNLLSNAVK+T EG V C K S
Sbjct: 436 VNGDQVHLMQIFSNLLSNAVKYTQEGGEIQFFVEECETKSSVYA---------------- 479
Query: 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG- 598
++ F V D G G+ + + T+F+ + + +
Sbjct: 480 --------------------------KYRFLVSDNGMGMSADFKDTIFDAFTRAERSLTN 513
Query: 599 ---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GTGLG+ I ++LV MGG I+ VD E G+ G+CF + L I E
Sbjct: 514 KIQGTGLGMAITKNLVEAMGGTID-VDSELGQ-GSCFEVLLDLKITE 558
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 16/150 (10%)
Query: 979 QTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV 1038
Q E +E+DG L+G + L A+D+ + + L+ GA CENGE L+
Sbjct: 567 QEETDEQDG------NILQGMRFLCAEDNELNAEILTELLKIEGAECTICENGEEILKAF 620
Query: 1039 RSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHIS 1098
AP YD ILMD +MP+MNGYEAT+ IR IPIIA+TA+
Sbjct: 621 EQS--------APG--DYDMILMDVQMPVMNGYEATKAIRRSSHELAKTIPIIAMTANAF 670
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
E+ ++ AGM+ H+ KP+ L + I+
Sbjct: 671 SEDIQHSLAAGMNAHVSKPVEMKVLEKTIR 700
>gi|442611793|ref|ZP_21026496.1| hypothetical protein PALB_34970 [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441746538|emb|CCQ12558.1| hypothetical protein PALB_34970 [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 752
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 146/292 (50%), Gaps = 58/292 (19%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
+K E+ ++AE S KS AN SH+IR + G+ G++ L +E P + +TN +N
Sbjct: 231 VKLAESKEKAEEASKLKSEFLANMSHEIRTPMNGVIGMLSL--LEKEPLKDHQTNF--VN 286
Query: 414 VC---ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
V A LL L+N ILD SK+EA K++L E +F++ L+ +++ VE +L
Sbjct: 287 VAKGSAQSLLTLINDILDFSKIEADKLELEEVEFNLEALISEMISALSYKVETNQVEFIL 346
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
D S ++ V GD ++ +QI+SNL+SNA+KFTS+G I V+
Sbjct: 347 DTSQ---VQHVFVVGDPIRFRQIVSNLVSNAIKFTSQGEILVKF---------------- 387
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+ Q D + + + ++ DTG GI + ++ +F ++
Sbjct: 388 --------------------------STQLDADRVCVSAQISDTGIGISELEQSRLFSSF 421
Query: 591 VQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
QV GGTGLGL IV+ L LM G + V+ E G +G+ F F+V+
Sbjct: 422 SQVDASTTRQFGGTGLGLAIVKKLCELMHGQVG-VESEKG-KGSRFFFDVYF 471
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 10/132 (7%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ + + VA L +LG V NG A+ +++ + P +L
Sbjct: 626 VLLVEDNKVNQLVASKLLDNLGLKVTIANNGREAIDVLKVHYQETD--------PIALVL 677
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MDC+MP M+G+EAT++IR+ E ++ IPI+ALTA+ + + + AGM+ +L KP+
Sbjct: 678 MDCQMPEMDGFEATQRIRQGEAGTRLKRIPILALTANAMKGDEENCLNAGMNDYLAKPIQ 737
Query: 1120 RDHLMEAI-KYL 1130
D L ++ K+L
Sbjct: 738 VDALTHSLSKFL 749
>gi|406961810|gb|EKD88400.1| sensory box histidine kinase/response regulator, partial
[uncultured bacterium]
Length = 478
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 127/267 (47%), Gaps = 51/267 (19%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA + AE+ KS AN SH+IR + GI G++EL ++ SE + A
Sbjct: 252 VEAKRLAEQADRAKSEFLANMSHEIRTPMNGIMGMLELL-LDTSLNSEQRDYVSTARDSA 310
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV-LDPSDG 475
LLG+LN +LD SK+EAG++ + ++D+ +E V A KG+E+ L D
Sbjct: 311 EALLGILNDVLDFSKIEAGQLTIDAIEYDLRSTVEGVAHTLVSRAENKGIELACLIDKDV 370
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
S+V GD +L+Q+L NL+ NA+KFTSEG + +R ++ +
Sbjct: 371 P----SRVLGDAGRLRQVLINLVGNAIKFTSEGEVVIRVMMQSKT--------------- 411
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
E F V DTG GIP +++K VFE +VQ
Sbjct: 412 --------------------------EKTSTLRFLVSDTGIGIPLDRQKAVFERFVQADS 445
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDI 618
GGTGLGL I L ++MGGDI
Sbjct: 446 SSTRKYGGTGLGLTISAQLTKMMGGDI 472
>gi|114776750|ref|ZP_01451793.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus
ferrooxydans PV-1]
gi|114552836|gb|EAU55267.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus
ferrooxydans PV-1]
Length = 841
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 159/355 (44%), Gaps = 68/355 (19%)
Query: 292 GVKSVY-ALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLC 350
GVK Y A+A+ G V++V+ + I M +G L+ +L AR +K H
Sbjct: 131 GVKYAYLAMALSVAGFVTVVYLNP--FWMQHIYMAIGNLLLILVVPLFMARLIQKLHH-- 186
Query: 351 ASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR 410
A AE + KS AN SH++R L GI G+ +L Y +E +
Sbjct: 187 --------AIDAAEAANRAKSQFMANMSHELRTPLNGIIGMSDLLY-STSLSNEQKRFTF 237
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+ A L L+ ILD +K+EAGK++L+ E FD+ +LL V LF A K + + L
Sbjct: 238 VIKESAYHQLSLIERILDMAKLEAGKLELLHEPFDLHQLLHGTVALFEGQAKEKAIRIAL 297
Query: 471 --DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
DP + F+ + GD +KQIL N++ NAVKFT G ++++
Sbjct: 298 RYDPE----IPFALI-GDPKHIKQILLNIVGNAVKFTEHGSVTLK--------------- 337
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
V A++ E + F V DTG G+ ++ + +FE
Sbjct: 338 --------------------------VEASEVTEKNVVLQFTVTDTGIGMSEDVQGRIFE 371
Query: 589 NYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
+ Q + GGTGLG I ++L LMGG I + K GT F N+ L+
Sbjct: 372 QFTQADASITRRFGGTGLGTTIAKNLTELMGGSISL--KSRAGAGTTFTINLPLS 424
Score = 47.0 bits (110), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
R Q KPL IL+A+D+ + + V + L+ G V+ E+GE AL +
Sbjct: 577 RKQQLKPLH---ILLAEDNAVNQEVMQEVLKKAGHNVQLAEDGEQALDALAGDTQ----- 628
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA 1108
+D +L+D MP +G + ++ R + + P++ L+A + + ++A
Sbjct: 629 -------FDLVLLDMNMPKASGLDVLKQFRFMDTTGKT--PVLMLSADALPDTIRECMDA 679
Query: 1109 GMDVHLGKPLNRDHLMEAI 1127
G + +L KP+ L+E +
Sbjct: 680 GANDYLTKPVQLASLLEKV 698
>gi|257454753|ref|ZP_05620007.1| multi-sensor hybrid histidine kinase [Enhydrobacter aerosaccus
SK60]
gi|257447873|gb|EEV22862.1| multi-sensor hybrid histidine kinase [Enhydrobacter aerosaccus
SK60]
Length = 1101
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 139/318 (43%), Gaps = 70/318 (22%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
R A EM + I+ A A S KS AN SH++R L I G I L G
Sbjct: 317 RLAFDEMEMQNISIR--NARDAAVSASQTKSAFLANISHELRTPLNSIDGFINLLSRHGG 374
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
+E + ++ + + LL L+N +LD SK+EAGK+ L +FD+ + DVVD+ P+
Sbjct: 375 LNAEQDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLVLDSHEFDLYASIYDVVDMLSPL 434
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVK----GDRVKLKQILSNLLSNAVKFTSEGHISVRACV 516
A K + + +V + V GD ++ KQ+L+NL++NA+KFT +G + VR +
Sbjct: 435 AAEKDLRL-------AVFFYDDVPHYLVGDALRTKQVLTNLVNNAIKFTDDGEVIVRVSL 487
Query: 517 KKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGK 576
+ H V DTG+
Sbjct: 488 DD-------DIDDLIH------------------------------------ISVQDTGR 504
Query: 577 GIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGE----- 627
GI E +K +F+++ Q + GGTGLGL I + L LMGG+I D +
Sbjct: 505 GISPEHQKVLFQSFSQGDPSITRQYGGTGLGLVISKQLTYLMGGNIGFYDNATEQAGDAS 564
Query: 628 -----RGTCFRFNVFLAI 640
+GT F F + + I
Sbjct: 565 QSHKIKGTTFWFTLPMTI 582
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKR--NQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
D I MD +MP M+G EA +IR+ E + NQ HIPIIALTAH +E DK + +G+D ++
Sbjct: 798 DLIFMDIQMPRMSGSEAAIQIRKVETQAGNQ-HIPIIALTAHSLSDERDKLLASGIDDYV 856
Query: 1115 GKPLNRDHLMEAIK 1128
GKP+++ L++ ++
Sbjct: 857 GKPISQAQLLQILQ 870
>gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
Length = 1238
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 143/293 (48%), Gaps = 53/293 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q AE ++ KS AN SH+IR + I G+++L ++ + L + A
Sbjct: 709 LEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTAQQKDYLEKAGFSA 767
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DPSDG 475
LL ++N ILD SK+EAGK++L F + ++L+ +DL A +GVE++L P
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTA 827
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ +KGD ++L Q+L NLLSNAVKFT G I
Sbjct: 828 GLI----LKGDPLRLGQVLINLLSNAVKFTQSGEI------------------------- 858
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK- 594
+L + +RD + + F V DTG GI K+++ +F+ + Q
Sbjct: 859 ---------------ELGCEDVGERD-HRITLKFWVRDTGIGIGKDQQDKLFDAFAQADG 902
Query: 595 ---EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + LV +MGG ++ V E G G+ F F + I EA+
Sbjct: 903 STTRKYGGTGLGLSISKHLVSMMGGKMQ-VQSELG-VGSTFSFTISFEIAEAA 953
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 23/150 (15%)
Query: 980 TEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR 1039
E++ EDGE + +L+ +D+ + ++VA L+ G V NG+ AL +
Sbjct: 1101 VEVQVEDGEHTGL--------VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTI- 1151
Query: 1040 SGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG 1099
D R P+D +LMD +MP+M+G A R +RE ++ +PIIA+TAH
Sbjct: 1152 ----DSR--------PFDAVLMDIQMPVMDGLTAARALRERFSADE--LPIIAMTAHAMS 1197
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
+ +K++ AGM+ H+ KP+ + L E + +
Sbjct: 1198 GDREKSLAAGMNAHITKPIVLNELFETLNH 1227
>gi|427421169|ref|ZP_18911352.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425757046|gb|EKU97900.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 927
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 144/299 (48%), Gaps = 57/299 (19%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I + EA AE KS AN SH+IR + GI G+ G L+T+L Q
Sbjct: 266 ISRDEALAAAESKSN----FLANMSHEIRTPMNGILGM---------SGLLLDTDLTQQQ 312
Query: 414 V--------CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
C N L+ ++N ILD SK+E+GK+ L E F++ +E+ +DL A KG
Sbjct: 313 RNFSETIWNCCNSLITIINDILDFSKIESGKLDLEECPFELRTCVEEALDLLAARAAEKG 372
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGH--ISVRACVKKPSAIG 523
+E+ + +F GD +L+QIL NL+ NAVKFT EG + VR + S+I
Sbjct: 373 LELAYIADLSTPNRFV---GDVTRLRQILVNLIGNAVKFTHEGEVLVKVRTTPLQKSSIE 429
Query: 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKR 583
+ L H AQ E+ + F+V DTG GIP +K
Sbjct: 430 DIKLKDISH-------------------------AQGKESFVTLHFDVQDTGIGIPTDKM 464
Query: 584 KTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+F+++ QV GGTGLGL I + L LMGG++ V GE G+CF F++ +
Sbjct: 465 DRLFKSFSQVDASTTRQYGGTGLGLSISKQLCELMGGNM-TVTSVVGE-GSCFSFSIVV 521
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 19/135 (14%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
PLR ILVA+D+++ +++ L LG + NG A+ ++
Sbjct: 688 PLR---ILVAEDNLVNQQLIRQWLDKLGYRSDIVGNGYEAIDALKRQ------------- 731
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREE-EKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
PYD ILMD MP M+G AT KI E+ N+ H I+ALTA + D + AGM +
Sbjct: 732 PYDVILMDVHMPEMDGLTATEKICEQWSTANRPH--IVALTASAMKGDRDLCMAAGMHDY 789
Query: 1114 LGKPLNRDHLMEAIK 1128
+ KP++ L+ +K
Sbjct: 790 ISKPIHVPDLIAVLK 804
>gi|88706907|ref|ZP_01104606.1| two-component system sensory histidine kinase [Congregibacter
litoralis KT71]
gi|88698829|gb|EAQ95949.1| two-component system sensory histidine kinase [Congregibacter
litoralis KT71]
Length = 508
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 129/275 (46%), Gaps = 57/275 (20%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS-----ELETNL 409
++++A Q A+ + KS AN SH++R L I G E+ + E + + +++L
Sbjct: 257 EEIDAKQSADEANAAKSRFLANVSHELRTPLNAIIGYSEMLHDELDDEAPVDREQYQSDL 316
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
++ + LL L++ ILD SK+E GKM L+ E F GE L VD P+ R G V
Sbjct: 317 DKIVLSGRQLLALIDDILDLSKIETGKMTLVREAFHPGEALTMAVDALAPLLRRNG--NV 374
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
L+ D S L ++ D VK +Q++ NLLSNA KFT +G I V A + SA
Sbjct: 375 LECDDFSDLP--QIHNDAVKFRQVIVNLLSNAAKFTEQGVIRVSASFEASSA-------- 424
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
+ + V DTG G+ +E++ VF+
Sbjct: 425 ------------------------------------QLSIAVSDTGIGMTEEQQALVFDA 448
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEI 620
+VQ ++ GGTGLGL I + LMGG I +
Sbjct: 449 FVQAEDTTSNTYGGTGLGLAICRDFCELMGGTIAV 483
>gi|366163023|ref|ZP_09462778.1| chemotaxis CheB/CheR fusion protein [Acetivibrio cellulolyticus
CD2]
Length = 822
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 140/286 (48%), Gaps = 54/286 (18%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
++ ++AE + KS AN SH+IR L G+ G+I+L + + +E NL C +
Sbjct: 329 KSKEEAEAANKAKSQFLANMSHEIRTPLNGMVGMIDLTLM-SDLNNEQRDNLETAKSCVD 387
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR-KGVEVVLDPSDGS 476
LL L+N ILD SK+EAGK++L+ F + +LLE V P ++ K V++D S S
Sbjct: 388 SLLKLINEILDFSKIEAGKLELVNSSFRLEDLLEQTV---KPYKIKAKEHNVMVDYSISS 444
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
L + GD++++KQ+L+NLLSNA+KFT G I+++
Sbjct: 445 DLP-EYIIGDQLRIKQVLNNLLSNALKFTEAGSINLKV---------------------- 481
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+N DE + FEV DTG GI E + +F+++ QV
Sbjct: 482 -----------------DINTIDNDEFIL---FEVSDTGVGIADEDMEKLFKSFSQVDNS 521
Query: 597 ----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GTGLGL I + L+ MGG I I K G+ F F + L
Sbjct: 522 YTRKYNGTGLGLAISKRLIEKMGGSIWI--KSEKGIGSTFSFTIKL 565
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 27/144 (18%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILV DD + + V E LR G V+ NG A+ V +D +L
Sbjct: 590 ILVVDDDKINQTVIEGMLRGFGHRVKIANNGFEAINCVSEK-------------NFDLVL 636
Query: 1061 MDCEMPIMNGYEATRKIREEE-KRN-------------QVHIPIIALTAHISGEEADKTI 1106
MD +MP M+G AT+ IRE E K+N +PI+ALTAH + +K +
Sbjct: 637 MDIQMPEMDGVTATKYIRESELKKNNYISKEELTSEEHNFRLPIVALTAHALQGDKEKFL 696
Query: 1107 EAGMDVHLGKPLNRDHLMEAIKYL 1130
GMD ++ KP+ L I+ +
Sbjct: 697 AFGMDAYISKPVIISELFNTIEQI 720
>gi|392557116|ref|ZP_10304253.1| sensor protein [Pseudoalteromonas undina NCIMB 2128]
Length = 908
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 143/296 (48%), Gaps = 54/296 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A Q ++ + KS AN SH+IR L + G L E P + L L ++N+ +
Sbjct: 526 VKAKQHSDLANQAKSRFLANMSHEIRTPLNAVIGFSTLAKNEDSPET-LSDYLNKINLAS 584
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
N LL L+N +LD SK+E+ K+ L FD+ LL + +F A +KG+ +D +
Sbjct: 585 NSLLSLINDVLDISKIESQKLTLEVAPFDLNALLARISSMFEQSAEQKGINWKVDNQLPT 644
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ F +GD ++++QIL NL SNA+KFT EG +S+ A K+ ++ RH
Sbjct: 645 DIWF---EGDVMRIEQILLNLCSNAIKFTYEGEVSISAYSKE--------IADKRH---- 689
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+ T + D+G GI ++ +F+ + Q
Sbjct: 690 -----------------------------QITLAIRDSGIGIAASEQSKLFDAFTQADSS 720
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL---AIREASA 645
GGTGLGL I + L LM GDI+ V E G +G+ F +V L A+++ +A
Sbjct: 721 TSRKFGGTGLGLAIAKELSLLMSGDIK-VQSEPG-KGSTFTLSVELNTCAVQQVTA 774
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 20/169 (11%)
Query: 964 LKTGNSSGEGSSRYKQTE-----IEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINL 1018
+K + G+GS+ E +++ + SQ L KILVA+D+ + + V + L
Sbjct: 746 IKVQSEPGKGSTFTLSVELNTCAVQQVTAKHSQQHVDLSKLKILVAEDNSVNQLVIKAML 805
Query: 1019 RHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078
LG T ENGE A++ V+ +ND +D +LMDC+MP+M+GY+AT IR
Sbjct: 806 SSLGITPTLVENGELAVEQVK--IND-----------FDLVLMDCQMPVMDGYQATALIR 852
Query: 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+ + Q +P+IALTA + E+ + G + HL KPL D L + +
Sbjct: 853 KTKSAEQ--LPVIALTADVMPEDKANALAIGFNEHLAKPLELDKLTQCL 899
>gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
NCIMB 400]
gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
NCIMB 400]
Length = 1236
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 141/291 (48%), Gaps = 53/291 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q AE +M KS AN SH+IR + I G+++L + + L + A
Sbjct: 709 LEAKQDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTVQQQDYLNKAGFSA 767
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DPSDG 475
LL ++N ILD SK+EAGK++L F + ++L+ V+D+ A KGVE++L P
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHVIDINAIKAQEKGVELLLYAPVTA 827
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ + GD ++L Q++ NLLSNAVKFT G +
Sbjct: 828 GLILY----GDPLRLGQVIVNLLSNAVKFTQTGEV------------------------- 858
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+L + +RD+ + F V DTG GI K+++ +F+ + Q
Sbjct: 859 ---------------ELGCEDVGERDDR-ITMKFWVRDTGIGISKDQQAMLFDAFSQADG 902
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GGTGLGL I + LV +MGG ++ V+ E G G+ F F + I E
Sbjct: 903 STTRKYGGTGLGLSISKHLVSMMGGTMQ-VESELGS-GSIFSFTISFEIAE 951
Score = 77.0 bits (188), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 15/129 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ + ++VA L+ G V +NG+ AL ++ S P+D +L
Sbjct: 1112 VLLVEDNFINQQVASELLKSAGYEVVIADNGQVALDVIDSK-------------PFDAVL 1158
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP+M+G AT ++R+ + Q +PIIA+TAH + +K++ AGM+ H+ KP+
Sbjct: 1159 MDIQMPVMDGLTATAELRKRYSKQQ--MPIIAMTAHAMSGDKEKSLAAGMNAHITKPIVL 1216
Query: 1121 DHLMEAIKY 1129
L E + +
Sbjct: 1217 TELFETLSH 1225
>gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
gi|418022350|ref|ZP_12661337.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
gi|353538575|gb|EHC08130.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
Length = 1238
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 143/293 (48%), Gaps = 53/293 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q AE ++ KS AN SH+IR + I G+++L ++ + L + A
Sbjct: 709 LEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTAQQKDYLEKAGFSA 767
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DPSDG 475
LL ++N ILD SK+EAGK++L F + ++L+ +DL A +GVE++L P
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTA 827
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ +KGD ++L Q+L NLLSNAVKFT G I
Sbjct: 828 GLI----LKGDPLRLGQVLINLLSNAVKFTQSGEI------------------------- 858
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK- 594
+L + +RD + + F V DTG GI K+++ +F+ + Q
Sbjct: 859 ---------------ELGCEDVGERD-HRITLKFWVRDTGIGIGKDQQDKLFDAFAQADG 902
Query: 595 ---EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + LV +MGG ++ V E G G+ F F + I EA+
Sbjct: 903 STTRKYGGTGLGLSISKHLVSMMGGKMQ-VQSELG-VGSTFSFTISFEIAEAA 953
Score = 76.3 bits (186), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 23/150 (15%)
Query: 980 TEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR 1039
E++ EDGE + +L+ +D+ + ++VA L+ G V NG+ AL +
Sbjct: 1101 VEVQVEDGEHTGL--------VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTI- 1151
Query: 1040 SGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG 1099
D R P+D +LMD +MP+M+G A R +RE ++ +PIIA+TAH
Sbjct: 1152 ----DSR--------PFDAVLMDIQMPVMDGLTAARALRERFSADE--LPIIAMTAHAMS 1197
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
+ +K++ AGM+ H+ KP+ + L E + +
Sbjct: 1198 GDREKSLAAGMNAHITKPIVLNELFETLNH 1227
>gi|402701656|ref|ZP_10849635.1| sensor histidine kinase/response regulator [Pseudomonas fragi A22]
Length = 1049
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 163/345 (47%), Gaps = 66/345 (19%)
Query: 304 KGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCAS--LIKQME-AT 360
+G+ S + R+ + LL+V G+LI V + R RK L L+ +++ A
Sbjct: 508 EGIASSIWRSFEVLGALLVV--AGLLI-----VVQRRRILRKRHDLEQRQLLLDELQVAK 560
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC---AN 417
+ AE+ S +KS+ A SH+IR L I G++EL E N + +++ AN
Sbjct: 561 ESAEKASRSKSVFLATMSHEIRTPLNAIIGMLELVLTRKDNA---ELNTQSVHIAYESAN 617
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+ SILD S++E+GK+ L E + ELLE ++F +A +K + + LD +
Sbjct: 618 HLLALIGSILDISRIESGKLSLSPEPTRIKELLESTSNVFSGLARQKRLYLRLDIAP--- 674
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L V D +K+KQI+SNLLSNA+KFT +G I +R C P++
Sbjct: 675 LATELVWVDALKVKQIISNLLSNAIKFTEQGGIEIR-CQVSPAS---------------- 717
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV----QV 593
+ +++ V DTG GIP + +F + +
Sbjct: 718 ------------------------KTSLQVVISVSDTGVGIPAAQIDQIFNPFFITRDAI 753
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ G GLGL I + L MGG +E+ + + + GT F++ L
Sbjct: 754 NDPNAGAGLGLAICKELSNFMGGHLEV--ESDTKFGTQMTFSIVL 796
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D + + + L +LG V NG L + + D +L
Sbjct: 824 LLIVEDHLPSQYLLYQQLSYLGHRVVTASNGLEGLAMWQEN-------------EIDIVL 870
Query: 1061 MDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
D MP M+G E T+ IR E+ R II LTA E ++ + +GMD L KP+
Sbjct: 871 TDANMPQMSGIEMTQSIRRLEQSRGVRPCIIIGLTADAQREALERCLASGMDHALTKPI 929
>gi|373948030|ref|ZP_09607991.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
gi|386326124|ref|YP_006022241.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|333820269|gb|AEG12935.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|373884630|gb|EHQ13522.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
Length = 1238
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 143/293 (48%), Gaps = 53/293 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q AE ++ KS AN SH+IR + I G+++L ++ + L + A
Sbjct: 709 LEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTAQQKDYLEKAGFSA 767
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DPSDG 475
LL ++N ILD SK+EAGK++L F + ++L+ +DL A +GVE++L P
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTA 827
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ +KGD ++L Q+L NLLSNAVKFT G I
Sbjct: 828 GLI----LKGDPLRLGQVLINLLSNAVKFTQSGEI------------------------- 858
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK- 594
+L + +RD + + F V DTG GI K+++ +F+ + Q
Sbjct: 859 ---------------ELGCEDVGERD-HRITLKFWVRDTGIGIGKDQQDKLFDAFAQADG 902
Query: 595 ---EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + LV +MGG ++ V E G G+ F F + I EA+
Sbjct: 903 STTRKYGGTGLGLSISKHLVSMMGGKMQ-VQSELG-VGSTFSFTISFEIAEAA 953
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 23/150 (15%)
Query: 980 TEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR 1039
E++ EDGE + +L+ +D+ + ++VA L+ G V NG+ AL +
Sbjct: 1101 VEVQVEDGEHTGL--------VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTID 1152
Query: 1040 SGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG 1099
S P+D +LMD +MP+M+G A R +RE + +PIIA+TAH
Sbjct: 1153 SR-------------PFDAVLMDIQMPVMDGLTAARALRERFSADD--LPIIAMTAHAMS 1197
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129
+ +K++ AGM+ H+ KP+ + L E + +
Sbjct: 1198 GDREKSLAAGMNAHITKPIVLNELFETLNH 1227
>gi|345865191|ref|ZP_08817381.1| sensory/regulatory protein RpfC [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345123689|gb|EGW53579.1| sensory/regulatory protein RpfC [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 1565
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 128/274 (46%), Gaps = 52/274 (18%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH+IR + I GL L A P E L +++ A LL ++N ILD
Sbjct: 932 KSAFIANMSHEIRTPMNAILGLTHLLQ-RAVPTPEQSERLNKIDAAARHLLSIINDILDI 990
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAGK+ L + DF + + + + L A+ KG+ + +D + +V + ++GD +
Sbjct: 991 SKIEAGKLTLDQSDFHLDAIFDHIQSLLREQAIEKGLTIEVDRN--TVPHW--LRGDPTR 1046
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+Q L N NAVKFT G I +RA K + R
Sbjct: 1047 LRQALLNYAGNAVKFTERGTIFMRA-----------------------------KKLEER 1077
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLG 605
GD V FEV DTG GI +K +FE + QV GGTGLGL
Sbjct: 1078 GDEILVR------------FEVQDTGIGIEPDKLSGLFEAFEQVDASTTRRYGGTGLGLA 1125
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
I + L RLMGG++ E G RG+ F F L+
Sbjct: 1126 ITRHLARLMGGEVG-AQSEPG-RGSTFWFTARLS 1157
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 16/134 (11%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G +IL+ +D+ + R VA L G V+ ENG A+ +VR+ YD
Sbjct: 1185 GSRILLVEDNAINREVAMELLSGAGLAVDTAENGREAVTMVRA-------------TAYD 1231
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+LMD +MP M+G EATR IR ++ +PI+A+TA++ E+ +EAGM+ + KP
Sbjct: 1232 LVLMDIQMPEMDGREATRVIR--SMASKAALPILAMTANVFEEDRQACLEAGMNDFIAKP 1289
Query: 1118 LNRDHLMEAI-KYL 1130
++ + L I K+L
Sbjct: 1290 VDPESLFSTIAKWL 1303
>gi|186683828|ref|YP_001867024.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186466280|gb|ACC82081.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1888
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 140/290 (48%), Gaps = 45/290 (15%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA A+ + KS AN SH++R L I G ++ + +E + NL +N
Sbjct: 1399 EAVITADAANRAKSEFLANMSHELRTPLNAILGFTQIMSHDRALSTEHQQNLAIINRAGE 1458
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N IL+ SK+EAG++ L FD+ LLE++ ++ A KG+E+ + + S
Sbjct: 1459 HLLNLINDILEMSKIEAGRITLNLNSFDLIRLLENLEEMLRFRATSKGLELNFEYT--SY 1516
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
L ++ D KL+Q+L NLL NA+KFT G + +R ++ +G L H F
Sbjct: 1517 LP-QYIQADESKLRQVLLNLLGNAIKFTDTGRVMLRVAMEN---MGEKILPHPPHLF--- 1569
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG- 596
FEV DTG+GI ++ +FE + Q + G
Sbjct: 1570 -------------------------------FEVTDTGRGIAPQEINLLFEAFGQTETGR 1598
Query: 597 --EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
+ GTGLGL I + V LMGGDI + GE G+ F F++ + + AS
Sbjct: 1599 KSQQGTGLGLAISRKYVELMGGDISVTSI-IGE-GSTFAFDIQIDLAAAS 1646
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 27/143 (18%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DDS+ R V L +G V+ NG A+ L + PH+ I
Sbjct: 1668 RILVVDDSIDSRLVLVKILTSIGFAVQEAANGTEAIALWQQW--------QPHL-----I 1714
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIP-----IIALTAHISGEEADKTIEAGMDVHL 1114
MD MPIM+GYEAT+ I+ R + IP IIALTA+ E+ + TI+AG D ++
Sbjct: 1715 FMDMRMPIMDGYEATKIIK---AREETSIPNRKTIIIALTANAFEEQREATIKAGCDDYI 1771
Query: 1115 GKPLNRDHLMEA------IKYLH 1131
KP + L++ +KY++
Sbjct: 1772 NKPFREEELLKKLSEYLEVKYIY 1794
>gi|345876839|ref|ZP_08828601.1| phosphoenolpyruvate synthase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344226132|gb|EGV52473.1| phosphoenolpyruvate synthase [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 1426
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 128/274 (46%), Gaps = 52/274 (18%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH+IR + I GL L A P E L +++ A LL ++N ILD
Sbjct: 793 KSAFIANMSHEIRTPMNAILGLTHLLQ-RAVPTPEQSERLNKIDAAARHLLSIINDILDI 851
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAGK+ L + DF + + + + L A+ KG+ + +D + +V + ++GD +
Sbjct: 852 SKIEAGKLTLDQSDFHLDAIFDHIQSLLREQAIEKGLTIEVDRN--TVPHW--LRGDPTR 907
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+Q L N NAVKFT G I +RA K + R
Sbjct: 908 LRQALLNYAGNAVKFTERGTIFMRA-----------------------------KKLEER 938
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLG 605
GD V FEV DTG GI +K +FE + QV GGTGLGL
Sbjct: 939 GDEILVR------------FEVQDTGIGIEPDKLSGLFEAFEQVDASTTRRYGGTGLGLA 986
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
I + L RLMGG++ E G RG+ F F L+
Sbjct: 987 ITRHLARLMGGEVG-AQSEPG-RGSTFWFTARLS 1018
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 16/134 (11%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G +IL+ +D+ + R VA L G V+ ENG A+ +VR+ YD
Sbjct: 1046 GSRILLVEDNAINREVAMELLSGAGLAVDTAENGREAVTMVRA-------------TAYD 1092
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+LMD +MP M+G EATR IR ++ +PI+A+TA++ E+ +EAGM+ + KP
Sbjct: 1093 LVLMDIQMPEMDGREATRVIR--SMASKAALPILAMTANVFEEDRQACLEAGMNDFIAKP 1150
Query: 1118 LNRDHLMEAI-KYL 1130
++ + L I K+L
Sbjct: 1151 VDPESLFSTIAKWL 1164
>gi|328872704|gb|EGG21071.1| histidine kinase [Dictyostelium fasciculatum]
Length = 1178
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 121/233 (51%), Gaps = 35/233 (15%)
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
+ +N+C LL L+N+ILD SK+E K++L E +F L+ED VD+ +A +K +++V
Sbjct: 600 KTINICGEALLVLINNILDLSKLEEDKIELEEAEFSPLGLVEDAVDILTTIAEQKNIDIV 659
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
+V V GD +++Q+L+NLLSNA+KFT E V C S+
Sbjct: 660 YQLDKEAV---PCVIGDFYRIRQVLTNLLSNAMKFTPEKGRVVVGC------------SA 704
Query: 530 SRHGFLQSISCL--FYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
++ Q +C+ + K G N + F V DTG GIP+E R+ +F
Sbjct: 705 EKNEVAQQPTCINRIFNEKTIGG------------NYGKLKFWVKDTGIGIPEEGRERLF 752
Query: 588 ENY----VQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
+ + V + GG+GLGL I + L RL+GGDI K N G+ F F+V
Sbjct: 753 KEFSQYDVSITRNYGGSGLGLAISKKLTRLLGGDIWFDSKVN--HGSTFYFSV 803
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 18/133 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVE---ACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
KIL+A+DS++ ++VA L LG E NG+ A+ ++SG
Sbjct: 1043 KILIAEDSVINQKVAGRYLTRLGYPAENLIFVVNGQQAIDYLQSGRM------------V 1090
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQ-VHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D ILMD MP+++G EAT +IR+ +++ H II LTA+ E+ +K + +GM +L
Sbjct: 1091 DVILMDMHMPLLDGCEATIRIRQLYQQDSGPH--IIGLTANAYSEDKEKCLHSGMCQYLA 1148
Query: 1116 KPLNRDHLMEAIK 1128
KP+ + L +K
Sbjct: 1149 KPVKMEDLALELK 1161
>gi|302771433|ref|XP_002969135.1| hypothetical protein SELMODRAFT_14315 [Selaginella moellendorffii]
gi|300163640|gb|EFJ30251.1| hypothetical protein SELMODRAFT_14315 [Selaginella moellendorffii]
Length = 272
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 144/291 (49%), Gaps = 35/291 (12%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
Q AE S KS AN SH+IR + GI G+ L + E + N+ ++ CA LL
Sbjct: 13 QAAELASQAKSDFLANMSHEIRTPIHGILGMSALV-LGTSLTDEQKENMTTVSECAELLL 71
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
++NSILD K+EAG+ ++ F++ +L+ V + P A + + + D +V +F
Sbjct: 72 HIINSILDLGKIEAGRFEVELISFNLHHVLKSTVHILQPRAQAHNLRLSYEI-DSAVPEF 130
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
+ GD KL+Q L NL+ NA+KFT +G + V V + + LS
Sbjct: 131 --LVGDSGKLRQCLLNLVGNALKFTPDGEVRVEVSVHRFGMQDDSVLSR----------- 177
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEG 596
+NA+Q + +E E+ D+G GI K K K VF+ + Q +
Sbjct: 178 --------------LNASQWS-DMLEMMLEISDSGIGISKNKLKDVFKPFTQADASISRL 222
Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
GGTGLGL +VQ V LMGG I +V+ E G+ + + +L +E +A +
Sbjct: 223 YGGTGLGLCVVQRFVELMGGHI-LVESEYGKGSSFYIVLPYLLNKEGAAQE 272
>gi|254421982|ref|ZP_05035700.1| PAS fold family [Synechococcus sp. PCC 7335]
gi|196189471|gb|EDX84435.1| PAS fold family [Synechococcus sp. PCC 7335]
Length = 901
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 114/382 (29%), Positives = 177/382 (46%), Gaps = 68/382 (17%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS AN SH++R+ L I G + E+ P E NL + LL L+N +LD
Sbjct: 466 KSEFLANMSHELRSPLNSILGFTHILR-ESNPNLEQAENLDIIYRSGEHLLALINDVLDI 524
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK-VKGDRV 488
SK+E+G+++L FD+ LL+++ +F RKG+ ++ S K + V D +
Sbjct: 525 SKIESGRVELNNTQFDLYCLLDELQQMFSSAIDRKGLRFLMRRSP----KLPRTVVSDHL 580
Query: 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKA 548
KL+QIL NLLSNA+KFT+ G I++ V + G S +++G Q A
Sbjct: 581 KLRQILINLLSNALKFTAVGTITLS--VHSQNQDGQNQHSQNQYGQNQL--------NHA 630
Query: 549 RGDLEAVNAAQRDEN---AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG---EGGTGL 602
LE + Q + TF + DTG GI + +FE +VQ + G GTGL
Sbjct: 631 CESLEKQDNPQTTTTKPPSTLLTFSISDTGPGIAAADQAHLFEAFVQTQSGLDSPEGTGL 690
Query: 603 GLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSA 662
GL I ++L+GG++ VD + GE G F F+V +A+ GD A
Sbjct: 691 GLAISHEYIQLLGGNL-TVDSQLGE-GATFAFSVPVAV------------------GDHA 730
Query: 663 AGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIAN-EERRRIAQKF 721
+ T K P S R+ L+PG + + +L++ + R++
Sbjct: 731 LS------LPTTTKQP---------SRRVIGLAPG---QPDYRILVVDDVAVNRKLLSHL 772
Query: 722 MENLGINV-------SAVSRWE 736
+ N+G V A++RWE
Sbjct: 773 LMNVGFEVREAQNGEEAIARWE 794
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD + R++ L ++G V +NGE A+ S PH+ I
Sbjct: 755 RILVVDDVAVNRKLLSHLLMNVGFEVREAQNGEEAIARWESW--------QPHL-----I 801
Query: 1060 LMDCEMPIMNGYEATRKIREEEKR--NQVH-IPIIALTAHISGEEADKTIEAGMDVHLGK 1116
LMD MPIM G EATR+I+ EK N H I+ALTA+ E+ I G D + K
Sbjct: 802 LMDMRMPIMTGEEATRRIKTLEKTRINPYHQTRIVALTANAFTEDRTAAIACGCDDFISK 861
Query: 1117 PLNRDHLMEAI 1127
P+ + + E +
Sbjct: 862 PIRANEIFEKL 872
>gi|451980024|ref|ZP_21928424.1| putative PAS domain protein [Nitrospina gracilis 3/211]
gi|451762715|emb|CCQ89644.1| putative PAS domain protein [Nitrospina gracilis 3/211]
Length = 1783
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 147/294 (50%), Gaps = 56/294 (19%)
Query: 358 EATQQAERKSMN----KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
E +QAE +++ KS AN SH+IR + I G+ LC ++ S+ + L M
Sbjct: 1007 EQLRQAEHEAIAANEAKSRFLANMSHEIRTPMNAILGMAYLC-LKTELTSKQKEYLEGMQ 1065
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
A +LLG++N ILD SK+EAGK+ L FD+ E+LE + A +G E+V S
Sbjct: 1066 RSARNLLGIINDILDFSKIEAGKLSLESIPFDLAEVLETIASQESLRAFNQGTELVFFNS 1125
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
SK+ GD ++L Q+L+NL++NA+KFT +G ++V ++K L ++R
Sbjct: 1126 QAIP---SKLTGDPLRLGQVLTNLINNAIKFTIKGTVAVFVELEK--------LENNR-- 1172
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+F K F V DTG G+ E+ +++F+ + Q
Sbjct: 1173 -------VFVK------------------------FAVQDTGVGMDGEQIRSLFQAFEQA 1201
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV-FLAIRE 642
GGTGLGL I LV LMGG +E+ K N G+ F F + FL+ +E
Sbjct: 1202 DPSTTRRFGGTGLGLAISSQLVELMGGKLEVESKPN--EGSRFTFVIPFLSSQE 1253
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 82/131 (62%), Gaps = 17/131 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV-RSGLNDQRDLGAPHILPYDY 1058
K+L+A+D+ + + +A+ + LG V ENG ALQ++ +SG +D
Sbjct: 1417 KVLIAEDNQVNQVIAKELMEKLGFKVTLAENGREALQILDQSG--------------FDL 1462
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+LMD +MP+M+G+EATRKIRE+E+ +P+IALTA+ + ++T AGM+ H+ KP+
Sbjct: 1463 VLMDIQMPVMDGFEATRKIREQERFKD--MPVIALTANAMAGDRERTRAAGMNDHVTKPI 1520
Query: 1119 NRDHLMEAIKY 1129
+ D L+ +K+
Sbjct: 1521 DPDVLLGTLKH 1531
>gi|414878942|tpg|DAA56073.1| TPA: putative histidine kinase family protein [Zea mays]
Length = 1007
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 173/358 (48%), Gaps = 36/358 (10%)
Query: 320 LLIVMTVGVLISMLTFVF----KSARAARKEMHLC-ASLIKQMEATQQAERKSMNKSLAF 374
+ I ++G L+ L + + R AR E SL+K+ +AE + KS
Sbjct: 373 MAITTSIGTLVIALLIGYIVHATAKRIARVEDDFQEMSLLKK-----RAEDADIAKSQFL 427
Query: 375 ANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEA 434
A SH+IR + G+ G++++ ++ + + +R L+ L+N +LD +K+E+
Sbjct: 428 ATVSHEIRTPMNGVLGMLQML-MDTDLDTTQQDYVRTAQASGKTLVSLINEVLDQAKIES 486
Query: 435 GKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQIL 494
GK++L FD+ + +D++ LF A KG+E+ + SD + GD +++QI+
Sbjct: 487 GKLELEVVPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVP---QTLIGDPGRIRQII 543
Query: 495 SNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEA 554
+NL+ N++KFT +GHI + V + I + + + ++S N+K E
Sbjct: 544 TNLVGNSIKFTEKGHIYLTVHVVE--EIMHCLEVETGTQYTNTLSGYPVANRKR--SWEN 599
Query: 555 VNAAQRDENAMEFTF------------EVDDTGKGIPKEKRKTVFENYVQVKEG----EG 598
R+ N+ E F V+DTG GIP + + VF ++QV G
Sbjct: 600 FRLFSRELNSSEMPFAPIASDSISLMISVEDTGAGIPFDAQSRVFTPFMQVGPSIARIHG 659
Query: 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKEL 656
GTG+GL I + LV LM G+I K + G+ F F L +S N+N + KE+
Sbjct: 660 GTGIGLSISKCLVGLMKGEIGFSSKP--QVGSTFTFTAVLTRVHSSRNENKSSEFKEI 715
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L K+I+V DD+++ +VA L+ GA V ++G+ A+ L++ PH
Sbjct: 860 LHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLK----------PPH--N 907
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKR-----------------NQVHIPIIALTAHIS 1098
+D MD +MP M+G+EAT++IR E+ Q PI+A+TA +
Sbjct: 908 FDACFMDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPECVGVRQWRTPILAMTADVI 967
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ +++ MD ++ KP + L +
Sbjct: 968 QATHEQCLKSEMDGYVSKPFEGEQLYREV 996
>gi|427723479|ref|YP_007070756.1| response regulator receiver modulated CheB methylesterase
[Leptolyngbya sp. PCC 7376]
gi|427355199|gb|AFY37922.1| response regulator receiver modulated CheB methylesterase
[Leptolyngbya sp. PCC 7376]
Length = 1250
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 136/282 (48%), Gaps = 56/282 (19%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E +Q+ + ++ K AN SH+IR + I G EL E + L+ + A+
Sbjct: 861 EISQKTQAANIAKDEFLANMSHEIRTPMTAILGFTELLQEELKDHPDTAEYLQIIYSSAD 920
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE--VVLDPSDG 475
LL +LN ILD SK+EAGK++L E F + +L D+ +F P +KG+E +V++ S
Sbjct: 921 SLLVILNDILDLSKIEAGKLRLKYETFSLPQLFADMEKMFIPKTNQKGLEFSMVVEESTP 980
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ F D V+L+QIL NL+SNA+KFT++G + V A +
Sbjct: 981 EFVVF-----DEVRLRQILFNLISNAIKFTNQGSVQVTASIH------------------ 1017
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
N + D N E+ DTG GIP ++ +FE + Q +E
Sbjct: 1018 --------------------NVSSEDSN---LKLEIADTGIGIPVSDQERIFEAFTQ-RE 1053
Query: 596 GE-----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
G+ GGTGLGL I L ++ G I +D E +RG+ F
Sbjct: 1054 GQSTRNYGGTGLGLHITSRLTEMLNGII-CLDSE-VDRGSKF 1093
>gi|162456058|ref|YP_001618425.1| two-component hybrid histidine kinase [Sorangium cellulosum So
ce56]
gi|161166640|emb|CAN97945.1| two-component hybrid histidine kinase [Sorangium cellulosum So
ce56]
Length = 919
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 141/291 (48%), Gaps = 31/291 (10%)
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVE 433
A+ SH+IR + GI G+ L ++ E L + + A+ LL ++N +LD SK+E
Sbjct: 185 LASVSHEIRTPMNGIIGMTSLA-LQTELTQEQREYLEMVKISADALLSIINDVLDFSKIE 243
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD--PSDGSVLKFSKVKGDRVKLK 491
AGK+++ FD E++ D V A K +E+ D P L GD ++L+
Sbjct: 244 AGKLEIEPVVFDPSEIIGDAVKTLALRAHEKRLELAYDVGPDVPEAL-----VGDPLRLR 298
Query: 492 QILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGD 551
Q+L NL+SNAVKFT G + VRA V + + P +S Q L+
Sbjct: 299 QVLVNLVSNAVKFTDAGEVVVRAEVDSRAPL-TPEEEASADS--QGTPSLY--------- 346
Query: 552 LEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK----EGEGGTGLGLGIV 607
A + +A+ V DTG GI EK++ VF+ + Q GGTGLGL I
Sbjct: 347 -----AGEVLGDAVVLRVSVIDTGIGIAPEKQRVVFDAFAQADGSTTRKYGGTGLGLTIC 401
Query: 608 QSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAG 658
LV +MGG I I + E G +G+ F F + L E +A + K+L G
Sbjct: 402 ARLVEMMGGKIWI-ESEAG-KGSTFHFTLQLRALEGAARSRRLEIPKDLLG 450
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 13/152 (8%)
Query: 979 QTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV 1038
+T + D R+ RG ++LVA+D+ + +++ L G V ENG A++ +
Sbjct: 593 RTSLRSADPRRAAPGPRARGLRVLVAEDNAINQKLMRRWLERQGHHVHIVENGRLAVEKI 652
Query: 1039 RSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHIS 1098
G YD L+D EMP M+G +A R +R E+R H+P+I +TA+
Sbjct: 653 AGG-------------QYDVALLDVEMPEMDGLQAARVVRARERREGGHMPLIVVTAYAM 699
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+ ++ + AG D ++ KP+ + L + I L
Sbjct: 700 KGDRERCLRAGFDGYVSKPVQVEELYDMIDRL 731
>gi|418679184|ref|ZP_13240449.1| 7TM diverse intracellular signaling [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|400320599|gb|EJO68468.1| 7TM diverse intracellular signaling [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
Length = 820
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 51/284 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 422 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 480
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL P+A +K ++ L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRL---EGK 537
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD ++L+QIL NL N +KFT+ G + ++ K S
Sbjct: 538 SEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 581
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+D ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 582 -----------------------KDGVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 616
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GG+GLGL I + L+ L GG +++ + + GE G+ F F +
Sbjct: 617 TARKFGGSGLGLSITKQLIELQGGVLKL-ESQEGE-GSKFTFTI 658
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 31/173 (17%)
Query: 963 LLKTGNSSGEGSSRYKQT---------EIEE-------EDGERSQAQKPLRGKKILVADD 1006
+LK + GEGS ++ T EIE+ +D E+S + +ILVA+D
Sbjct: 641 VLKLESQEGEGS-KFTFTIDYDIPSILEIEKILEAEKTKDLEKSFQDVVSKSTRILVAED 699
Query: 1007 SMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP 1066
+ + E L+ LG NG ++ R L +D ILMD MP
Sbjct: 700 NETNCLLIERALKKLGYDPTVVHNGREVIE--RMQLE-----------TFDIILMDIHMP 746
Query: 1067 IMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
++G EAT+ IR + + ++ I IIALTA +K I GM+ L KPL+
Sbjct: 747 EVDGIEATKWIRSKNQNSKFPI-IIALTADAIESSREKYISKGMNDCLTKPLD 798
>gi|255523233|ref|ZP_05390204.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans
P7]
gi|296186196|ref|ZP_06854601.1| PAS domain S-box domain-containing protein [Clostridium
carboxidivorans P7]
gi|255513101|gb|EET89370.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans
P7]
gi|296049464|gb|EFG88893.1| PAS domain S-box domain-containing protein [Clostridium
carboxidivorans P7]
Length = 779
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 144/285 (50%), Gaps = 51/285 (17%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I+ +A ++AE S KS AN SH+IR L G+ G+++L + E + NL
Sbjct: 278 IELRKAKEEAEAASKAKSEFLANMSHEIRTPLNGLVGMVDLTLL-TDLNCEQKENLMTAK 336
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
C N LL ++N ILD SK+EAGK+ + +FD+ L+E+++ A+ K +E+ S
Sbjct: 337 SCTNSLLKVINDILDFSKLEAGKLVIENINFDIKNLIEEIIKANSSTALAKQIELNYTFS 396
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
++ +F + GD +L+Q+L+NL++NA+KFT G IS++ VK I
Sbjct: 397 -STIPQF--LLGDPNRLRQVLNNLINNAIKFTEHGEISLK--VKNIETI----------- 440
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
DE+ ++ F + DTG GI +E T+FE++ QV
Sbjct: 441 ---------------------------DEH-VKLEFSITDTGIGISEENINTIFESFSQV 472
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
GGTGLGL I + L +MGG++ + K +G+ F F
Sbjct: 473 DGSSTRTVGGTGLGLAISKQLTEIMGGNLLV--KSKLGQGSSFYF 515
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 21/164 (12%)
Query: 971 GEGSSRY------KQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGAT 1024
G+GSS Y E++++ + + K IL+ +D + ++V L+ G
Sbjct: 508 GQGSSFYFVLMFPVGKELKKDIKQTFKINKVTENLNILLVEDDKLNQQVIGRMLKERGYL 567
Query: 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN 1084
V+ NG A+++ + YD ILMD +MP+MNG E T+ IRE+E N
Sbjct: 568 VDIAGNGLEAIKMYENK-------------KYDIILMDIQMPVMNGIETTKIIREKEIEN 614
Query: 1085 QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
HIPIIA+TA+ + +K + GMD ++ KP+ D L I+
Sbjct: 615 --HIPIIAITAYALKGDKEKFLSKGMDDYIPKPVKMDKLFNVIE 656
>gi|418741078|ref|ZP_13297454.1| 7TM diverse intracellular signaling [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|410751673|gb|EKR08650.1| 7TM diverse intracellular signaling [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 820
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 51/284 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 422 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 480
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL P+A +K ++ L +G
Sbjct: 481 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRL---EGK 537
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD ++L+QIL NL N +KFT+ G + ++ K S
Sbjct: 538 SEIQEYVYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 581
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+D ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 582 -----------------------KDGVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 616
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GG+GLGL I + L+ L GG +++ + + GE G+ F F +
Sbjct: 617 TARKFGGSGLGLSITKQLIELQGGVLKL-ESQEGE-GSKFTFTI 658
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 31/173 (17%)
Query: 963 LLKTGNSSGEGSSRYKQT---------EIEE-------EDGERSQAQKPLRGKKILVADD 1006
+LK + GEGS ++ T EIE+ +D E+S + +ILVA+D
Sbjct: 641 VLKLESQEGEGS-KFTFTIDYDIPSILEIEKILEAEKTKDLEKSFQDVVSKSTRILVAED 699
Query: 1007 SMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP 1066
+ + E L+ LG NG ++ R L +D ILMD MP
Sbjct: 700 NETNCLLIERALKKLGYDPTVVHNGREVIE--RMQLE-----------TFDIILMDIHMP 746
Query: 1067 IMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
++G EAT+ IR + + ++ I IIALTA +K I GM+ L KPL+
Sbjct: 747 EVDGIEATKWIRSKNQNSKFPI-IIALTADAIESSREKYISKGMNDCLTKPLD 798
>gi|288935843|ref|YP_003439902.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
gi|288890552|gb|ADC58870.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
Length = 895
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 139/282 (49%), Gaps = 54/282 (19%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
++A + KS AN SH+IR + GI G+ +LC ++ +E L + A LL
Sbjct: 259 KEAREANEAKSAFLANMSHEIRTPMNGILGMAQLC-LDTPLTAEQREYLSLVMSSAQSLL 317
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
++N ILD S++E+GKMQ+ EE ++ ++ ++ P A KG+E+++D S +V +
Sbjct: 318 HIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISP-AVPEV 376
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
V G R L+QIL+NLL NA+KFT +G + + AI P+ SR
Sbjct: 377 LIVDGPR--LRQILTNLLGNALKFTHQGEVLL--------AIA-PADDESR--------- 416
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--- 597
+ F + DTG GI EK+K +FE + Q
Sbjct: 417 --------------------------WRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRR 450
Query: 598 -GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I LV LMGG++ VD + G G+ F F + L
Sbjct: 451 YGGTGLGLTISARLVSLMGGEL-TVDSQPGA-GSEFAFTLPL 490
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 14/131 (10%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G IL+A+D+++ ++VA L LG E NG AL+ R+ +D
Sbjct: 649 GLHILLAEDNLVNQKVARRLLEQLGHRCEVVNNGREALERWRATC-------------WD 695
Query: 1058 YILMDCEMPIMNGYEATRKIREEE-KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
+L+D +MP M+G A R +REE R + H P +A+TAH + ++ + G D ++ K
Sbjct: 696 LLLIDLQMPEMDGETAIRLLREETLARGREHQPAMAMTAHAMQGDRERCLAMGFDDYIAK 755
Query: 1117 PLNRDHLMEAI 1127
P++++ L EAI
Sbjct: 756 PVSQEALREAI 766
>gi|347756505|ref|YP_004864068.1| Signal transduction histidine kinase [Candidatus
Chloracidobacterium thermophilum B]
gi|347589022|gb|AEP13551.1| Signal transduction histidine kinase [Candidatus
Chloracidobacterium thermophilum B]
Length = 780
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 151/328 (46%), Gaps = 50/328 (15%)
Query: 326 VGVLISMLTF--------VFKSARAARKEMHLC----ASLIKQMEATQQAERKSMNKSLA 373
+GV++ + T K A +E+ L ASL +++E + A + + A
Sbjct: 180 LGVVLVIFTLEGNFIVRRALKQTTAVIREISLARDRLASLNRRLEQARDAAQAAARAKSA 239
Query: 374 F-ANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKV 432
F AN SH+IR + G+ G+ L G + E L + A LL +LN ILD SK+
Sbjct: 240 FLANMSHEIRTPMNGVIGMSNLLASTPLSGEQRE-YLETIRSSAESLLVILNDILDFSKI 298
Query: 433 EAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQ 492
EAG + + + FD+ E +E +D+ A RK ++V D + + D + +Q
Sbjct: 299 EAGALHIEQTPFDLRECIESTLDVIAEPASRKRLDVAYLIEDNVP---TTIVSDPTRFRQ 355
Query: 493 ILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDL 552
+L NLLSNA+KFT +G + V +P PSL+ N + R
Sbjct: 356 VLLNLLSNAIKFTEQGEVVVTVSA-EPLDDDEPSLTK------------LTANDRPR--- 399
Query: 553 EAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQ 608
E +V DTG GIP E VF ++ Q E GGTGLGL I +
Sbjct: 400 -----------RYELRVDVRDTGIGIPPEAHGRVFRDFEQATETTYRVYGGTGLGLAISK 448
Query: 609 SLVRLMGGDIEIVDKENGERGTCFRFNV 636
LV ++GG+I + E G RGT F F +
Sbjct: 449 RLVEMLGGNIWF-ESEVG-RGTTFHFTL 474
Score = 59.7 bits (143), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q PLR +LV +D+++ R++A L LG + +G ++ + + ++
Sbjct: 638 QHPLR---VLVVEDNVVNRKLAVRMLEKLGYQPDTASDGIEGVEAILGAVACEK------ 688
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
PYD + MD +MP +G EA R++R + IALTA + EE AG+D
Sbjct: 689 --PYDLVFMDVQMPGKDGLEAVREVRAALAPDMCP-RFIALTAAVLEEERRAAFAAGVDD 745
Query: 1113 HLGKPLNRDHLMEAIK 1128
+LGKP L+ A++
Sbjct: 746 YLGKPFTIHDLVAALQ 761
>gi|392425027|ref|YP_006466021.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
gi|391354990|gb|AFM40689.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
Length = 810
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 150/285 (52%), Gaps = 47/285 (16%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN 413
I+ +A ++AE+ S+ KS AN SH+IR L G G+I+L +++ + L+
Sbjct: 320 IELRKAKEEAEKASIAKSEFLANMSHEIRTPLNGTMGMIDLV-LQSSLKPDQHNYLQVAK 378
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
CA LL ++N +LD SK+EAGKM +F++ +LLE++V + A KG+ ++ S
Sbjct: 379 NCAYSLLNIINDVLDFSKIEAGKMLTETINFNLKDLLEELVKVHTVNAAGKGLGLICTCS 438
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
V + +KGD +++Q+L+NL+SNAVKFT G+I V+ KP
Sbjct: 439 -ADVPAY--LKGDPNRIRQVLNNLVSNAVKFTHSGNIVVQVRNTKP-------------- 481
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+N ++ A+EF+ V DTG GI +++ + +F+++ QV
Sbjct: 482 ---------------------INESETMACALEFS--VSDTGIGIAEDEMEKLFKSFSQV 518
Query: 594 K----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
GGTGLGL I + L LMGG + V+ + G +G+ F F
Sbjct: 519 DGSHTRKYGGTGLGLIISKQLTELMGGRM-WVESQKG-KGSTFSF 561
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 18/149 (12%)
Query: 984 EEDGERSQAQKPLRGKK----ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR 1039
E GE + +P+ ++ IL+ +D+++ + V L+ G V NG AL +
Sbjct: 569 ESAGEVEPSSEPMEKEQLSVTILLVEDNLVNQDVLTKMLQIGGHKVHKACNGLEALDAL- 627
Query: 1040 SGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG 1099
+Q+D +D I+MD MP MNG EAT+ IRE E RN+ PIIALTA+
Sbjct: 628 ----EQQD--------FDLIIMDIYMPEMNGIEATKLIRENE-RNKKRTPIIALTAYALK 674
Query: 1100 EEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ ++ + GMD +L KP+ + L+ ++
Sbjct: 675 GDRERFLARGMDEYLSKPVLIEELLNTVQ 703
>gi|16127218|ref|NP_421782.1| sensor histidine kinase/response regulator [Caulobacter crescentus
CB15]
gi|221236019|ref|YP_002518456.1| hybrid sensor histidine kinase/receiver domain-containing protein
[Caulobacter crescentus NA1000]
gi|13424622|gb|AAK24950.1| sensor histidine kinase/response regulator [Caulobacter crescentus
CB15]
gi|220965192|gb|ACL96548.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter
crescentus NA1000]
Length = 574
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 177/388 (45%), Gaps = 68/388 (17%)
Query: 265 VSCTSGNGTLSIGKIHYKA---YCSQFEVAGVKSVYAL--AMPRKGLVSLVHRTSKRALI 319
V TSGN L I A +Q ++A+ MP L+ + T A +
Sbjct: 96 VLWTSGNPALQWAAICLAAGQLIHAQSVTFRAPVLFAIDVGMPSTSLIVMPILTGGFAPV 155
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
+ M V + ML + F SA A + + A QA + S KS A SH
Sbjct: 156 QIATMMTAVAL-MLLYTFTSATANNRRIA------ALEAAEAQALKASEAKSAFLAMISH 208
Query: 380 DIRAALAGITGLIE-LCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQ 438
+IR + G+ + + L + GP +T L + DL+ LLN +LD S++EAGK++
Sbjct: 209 EIRTPMNGVLAMTDALSRADLGPDQARQTAL--LKRSGEDLMTLLNDVLDISRIEAGKLE 266
Query: 439 LIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLL 498
+ + FD+ ELL D+ L+ P A KG+++VL + G L ++ GD +L+QIL NL+
Sbjct: 267 IECQPFDLPELLGDLRALWTPAATDKGLDLVLTIAPG--LDAYRL-GDPTRLRQILGNLV 323
Query: 499 SNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAA 558
SNAVKFT G +++ S+R G EA A
Sbjct: 324 SNAVKFTRSGGVAL----------------SARPG-------------------EAPGA- 347
Query: 559 QRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----VKEGEGGTGLGLGIVQSLVRLM 614
F+V DTG G+ E++ +F+++ Q + GG+GLGL I L LM
Sbjct: 348 --------VVFDVADTGIGMTPEQQGRLFQSFSQADASIARRFGGSGLGLSICSQLATLM 399
Query: 615 GGDIEIVDKENGERGTCFRFNVFLAIRE 642
G I VD + G G+ FR + L + E
Sbjct: 400 DGAIT-VDSDLGS-GSTFRLTLPLPVTE 425
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G +LVADD + + VA L +GA V +NGEAAL ++S P
Sbjct: 449 LAGLTVLVADDHPVNQAVARAILEAVGARVAVADNGEAALASLKSA-------------P 495
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +LMD MP + G E R+IR E + +PIIALT GE+ G D
Sbjct: 496 ADLVLMDLHMPGLGGRETVRRIRRGEGGDPA-VPIIALTGEALGEDPAAWRAEGFDAVQQ 554
Query: 1116 KPL 1118
KP+
Sbjct: 555 KPV 557
>gi|386392025|ref|ZP_10076806.1| PAS domain S-box [Desulfovibrio sp. U5L]
gi|385732903|gb|EIG53101.1| PAS domain S-box [Desulfovibrio sp. U5L]
Length = 1506
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 134/282 (47%), Gaps = 50/282 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q+AE + KS AN SH+IR + GI G+ +L P ++ L+ ++
Sbjct: 1117 LEAKQKAELANRTKSEFLANMSHEIRTPMNGILGMTQLALNRDLP-DDVREFLQLVHQSG 1175
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAG++ L ++ FD+ E++E + +A KG+ + +
Sbjct: 1176 QSLLDIINDILDLSKIEAGRVVLEQKPFDLVEMVESTLKPLELLARDKGLTFLFSIAPDV 1235
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+V GD+ +L+QIL+N++ NA+KFT G + V+ C
Sbjct: 1236 P---DRVVGDKGRLRQILTNMVGNAIKFTKRGRVEVKVC--------------------- 1271
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
A R+ F + D G GI K + ++FE + Q+
Sbjct: 1272 -------------------QAEAREPGKASLLFLIKDEGIGISKAQIHSIFEKFEQIASS 1312
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
GGTGLGL I ++LV +MGG I++ + +G+ F F
Sbjct: 1313 AHVQYGGTGLGLAISKALVEMMGGMIQV--ESELHKGSTFSF 1352
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 14/124 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KIL+ +D+ + A L+ G TVE NG A++ +++ R+ +D +
Sbjct: 1381 KILLVEDNQVNSLFASHILQSWGHTVEIANNGRQAVETLKT-----RE--------FDLV 1427
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD MP+M+G +ATR IR + N IPI+A TA+ + ++ + GM+ ++ KPLN
Sbjct: 1428 LMDALMPVMDGEQATRLIRSGQAGNP-DIPIVAQTAYALQGDRERFLSVGMNDYISKPLN 1486
Query: 1120 RDHL 1123
D L
Sbjct: 1487 LDEL 1490
>gi|189191800|ref|XP_001932239.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187973845|gb|EDU41344.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 2314
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 144/299 (48%), Gaps = 46/299 (15%)
Query: 350 CASLIKQMEATQQAERKSMN-KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN 408
A+ I + +Q +++M+ KS +N SH+IR L GI+G++ +LE +
Sbjct: 1601 SATDINDHKLLEQTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDSVLNAEQLE-H 1659
Query: 409 LRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
+ + + LL L+N ILD SKVEAG ++L E + LLE+V DL +A++KG+E+
Sbjct: 1660 VNIIKASTDSLLNLINDILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLEL 1719
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
+G ++VKGD+ +++Q+L N++ NA+KFT G I +R V+ P +P L
Sbjct: 1720 NYLVEEGVP---AEVKGDKFRIRQVLLNVVGNAIKFTERGEIFIRCKVQPPDR--SPPLK 1774
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
EN FEV DTG+G + K +F+
Sbjct: 1775 ---------------------------------ENETMVRFEVIDTGQGFTDAEAKYLFK 1801
Query: 589 NYVQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
+ Q+ GGTGLGL I V L GG ++ + +G+ F F + + A
Sbjct: 1802 RFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDA--RSAPGKGSTFFFTIKFGLPTA 1858
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHI-PIIALTAHISGEEADKTIEAGMDVHL 1114
Y +L D MP +GY+A ++IR EK++ PIIAL+A++ G+ K +EAG + ++
Sbjct: 2223 YSIVLCDLHMPNKDGYQACKEIRRWEKKHGYRRHPIIALSANVLGDVYAKCVEAGFNSYV 2282
Query: 1115 GKPLNRDHLMEAI-KYL 1130
KP+ L A+ K+L
Sbjct: 2283 TKPVEFKELSLAMTKFL 2299
>gi|254513976|ref|ZP_05126037.1| sensor protein GacS [gamma proteobacterium NOR5-3]
gi|219676219|gb|EED32584.1| sensor protein GacS [gamma proteobacterium NOR5-3]
Length = 508
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 133/287 (46%), Gaps = 59/287 (20%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS-----ELETNL 409
++ +A A+ + KS AN SH++R L I G E+ + E + + + +L
Sbjct: 257 EEKDAKLSADEANAAKSRFLANVSHELRTPLNAIIGYSEMLHDELDDETPIDRKQYQNDL 316
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
++ + LL L++ ILD SK+E GKM L++E F GE L VD P+ R G V
Sbjct: 317 DKIVLSGRQLLALIDDILDLSKIETGKMTLVKEQFHPGEALTMAVDALAPLLRRNG--NV 374
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
L D S L + D VK +QI+ NLLSNA KFT+EG I V A + +
Sbjct: 375 LQCDDFSTLPM--INNDAVKFRQIIVNLLSNAAKFTAEGMIRVSASFTQ----------A 422
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
++H +E T V DTG G+ E++ VFE
Sbjct: 423 TQH--------------------------------LEIT--VSDTGIGMTPEQQALVFEA 448
Query: 590 YVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
+VQ + GGTGLGL I + LMGG I + E GE G+ F
Sbjct: 449 FVQADDATSNTYGGTGLGLAICRDFCELMGGQISVA-SEPGE-GSTF 493
>gi|443327318|ref|ZP_21055946.1| signal transduction histidine kinase [Xenococcus sp. PCC 7305]
gi|442793110|gb|ELS02569.1| signal transduction histidine kinase [Xenococcus sp. PCC 7305]
Length = 848
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 139/300 (46%), Gaps = 54/300 (18%)
Query: 349 LCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP-GSE-LE 406
L S+ + EA + AE+ + KS AN SH++R + I G E+ + EA G E
Sbjct: 320 LAQSIREASEARKVAEQANQAKSTFLANMSHELRTPMNAIIGYSEMLHEEAEDLGQEGFI 379
Query: 407 TNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV 466
+L++++ LL L+N ILD SK+EAG+M+L E F++ L+EDVV P+ +
Sbjct: 380 PDLQKIHGAGKHLLSLINDILDLSKIEAGRMELYLESFEIRGLIEDVVATIQPLIEKNQN 439
Query: 467 EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPS 526
+ + SDG + D K++Q L NLLSNA KFT +G I++ S
Sbjct: 440 TIEVHISDG----LKTMHSDLTKVRQSLFNLLSNASKFTQKGKITL-------------S 482
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTV 586
L+ H N F+V DTG G+ KE+ +
Sbjct: 483 LNDYTHN-----------------------------NQDWIDFQVSDTGIGMTKEQIGKL 513
Query: 587 FENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
F+ + Q GGTGLGL I + +MGGDIE+ N GT F + + +E
Sbjct: 514 FKAFSQADASTTRKYGGTGLGLAITKKFCEMMGGDIEVESAAN--EGTTFTIKLPIQFQE 571
>gi|410614162|ref|ZP_11325212.1| signal transduction histidine-protein kinase BarA [Glaciecola
psychrophila 170]
gi|410166202|dbj|GAC39101.1| signal transduction histidine-protein kinase BarA [Glaciecola
psychrophila 170]
Length = 1069
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 137/282 (48%), Gaps = 64/282 (22%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ----MNV 414
A +QA+ S KS AN SH+IR L GI G+ +L S L+ + R + V
Sbjct: 542 AEEQAKEASRAKSEFLANMSHEIRTPLNGILGMNDLLM-----NSNLDESQRHFAQLIKV 596
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
++ LL L+N ILD SK+EAGK+ + +D ++ LL D++D A K +++VLD +
Sbjct: 597 SSHSLLHLINDILDFSKIEAGKLNIELQDINLYTLLGDIIDSMAARAQDKNLDLVLDIA- 655
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
++ ++ K+ DRV KQ+L NLL NA+KFT +G I +R
Sbjct: 656 PTLPRWVKIDQDRV--KQVLINLLGNAIKFTEQGEIILRVE------------------- 694
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
S CL F V DTG GIPK+K+ +F ++QV
Sbjct: 695 -SSDECLI--------------------------FSVIDTGCGIPKDKQAQLFSQFMQVD 727
Query: 595 EG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GGTGLGL I + L +MGG I + + ++G+ F
Sbjct: 728 SSSTRQHGGTGLGLAISKQLSEMMGGGITL--QSVWQKGSTF 767
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 12/124 (9%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILV +D+ + ++V LR+L ENG+ AL ++RS H +D IL
Sbjct: 943 ILVVEDNYINQQVVMEMLRNLNCHCHLAENGQEALNMLRS-----------HTESFDLIL 991
Query: 1061 MDCEMPIMNGYEATRKIR-EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MDC+MP+MNGY+AT+ IR ++ +I I+ALTA+ + DK EAGM+ +L KP+
Sbjct: 992 MDCQMPLMNGYDATKHIRANKDGHFDENIFIVALTANAMKRDDDKCFEAGMNDYLTKPIL 1051
Query: 1120 RDHL 1123
+ L
Sbjct: 1052 SEQL 1055
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GK +LVAD +R+ E L G V++ + ++ +R + + P
Sbjct: 791 LHGKSLLVADSKKSVRQSVENFLIQSGIKVQSVSDAPETIKALRHAHDTNQ--------P 842
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
DY+L+D ++ MNG E ++ IR + + + V II +TA + G ++I + +L
Sbjct: 843 VDYVLIDLDLTGMNGLELSKAIRSDSRFSDVF--IILMTAQVGGTNTVQSIPTKISGYLS 900
Query: 1116 KPLNRDHLMEAI 1127
KPL D L++ +
Sbjct: 901 KPLKPDALIDVL 912
>gi|423202750|ref|ZP_17189329.1| TMAO reductase sytem sensor TorS [Aeromonas veronii AER39]
gi|404614946|gb|EKB11925.1| TMAO reductase sytem sensor TorS [Aeromonas veronii AER39]
Length = 941
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 142/288 (49%), Gaps = 50/288 (17%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN-LRQMN 413
KQ +A +AE+ + KS+ A SH+IR + GI G L +E S+ + L +
Sbjct: 433 KQRQARAEAEQANRAKSVFLATMSHEIRTPMNGILG--GLTLLEDTHLSDTQQRYLAAIE 490
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
LL +LN ILD SK+EAG ++ E F + +L++++ LF P A KGV + L+ +
Sbjct: 491 HSGESLLEILNDILDYSKIEAGHVEARREPFPLFQLVDELSALFRPKAEAKGVTLALEYA 550
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
G V+GD KL+Q+L NLL NAVKFT+ G I++ P P
Sbjct: 551 PGLA---PMVEGDLGKLRQVLGNLLGNAVKFTARGQITLTVA---PLVCHGPC------- 597
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+ C+ F V DTG GIP ++++ VFE + Q
Sbjct: 598 ---AEPCI--------------------------RFVVRDTGPGIPADEQEAVFEAFRQR 628
Query: 594 KEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
K +GGTGLGL I + LV MGG++ I+ E G +G F F++ L
Sbjct: 629 KRDIGHQGGTGLGLAISRKLVAAMGGEL-ILASEPG-KGCEFSFSLPL 674
>gi|357404866|ref|YP_004916790.1| histidine kinase [Methylomicrobium alcaliphilum 20Z]
gi|351717531|emb|CCE23196.1| putative Histidine kinase [Methylomicrobium alcaliphilum 20Z]
Length = 1181
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 141/286 (49%), Gaps = 53/286 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A Q+AER + K AN SH+IR + I GL L +A G++ ++++ +
Sbjct: 527 AKQEAERLASVKGNFLANMSHEIRTPMNAILGLAYLLE-KAELGTDELNLVKKIRIAGRS 585
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LLG++N ILD SK+E+G++++ F + ++L+++ L + VE+++ P+ +
Sbjct: 586 LLGIINDILDFSKIESGRLEIEHAPFRLSDVLDNLATLMSSIEYSNKVELIMGPAPEGI- 644
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+F ++GD ++L+QIL NL SNA+KFT +G +++ + +K P G L
Sbjct: 645 EF--LRGDALRLEQILVNLTSNALKFTQQGSVTI-SVIKLPPKDGRDYLR---------- 691
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE- 597
F V DTG GIP EK+ +F + Q
Sbjct: 692 ------------------------------FSVRDTGMGIPIEKQAEIFNAFSQEDTSTT 721
Query: 598 ---GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I + LV++MGG++ + N E G F + L I
Sbjct: 722 RRFGGTGLGLSICRYLVQMMGGELGV----NSELGIGSEFWLMLPI 763
Score = 77.4 bits (189), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 81/156 (51%), Gaps = 23/156 (14%)
Query: 983 EEEDGERS-------QAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAAL 1035
+ GERS ++K L G +L+ DDS + R +A L GATV + G AAL
Sbjct: 904 QRRQGERSIQHNNTTPSEKRLNGLNLLLVDDSEINRDMARRILEAEGATVYLADEGHAAL 963
Query: 1036 QLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA 1095
Q +R LN DL D +LMD +MP+M+GYEATR+IR E +PI+ALTA
Sbjct: 964 QWLR--LNP--DLA-------DVVLMDIQMPLMDGYEATRQIR--EVLGLTLLPIVALTA 1010
Query: 1096 HISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH 1131
+ + AGM+ + KP + + L I YL
Sbjct: 1011 GAFKNQQAAALNAGMNGFIAKPFDVEEL---IAYLQ 1043
>gi|357633167|ref|ZP_09131045.1| signal transduction histidine kinase with CheB and CheR activity
[Desulfovibrio sp. FW1012B]
gi|357581721|gb|EHJ47054.1| signal transduction histidine kinase with CheB and CheR activity
[Desulfovibrio sp. FW1012B]
Length = 1507
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 138/286 (48%), Gaps = 50/286 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q+AER + KS AN SH+IR + GI G+ +L P ++ L+ ++
Sbjct: 1117 LEAKQKAERANRTKSEFLANMSHEIRTPMNGILGMTQLALNRDLP-DDVREFLQLVHQSG 1175
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAG++ L ++ FD+ E++E + +A KG+ + + G
Sbjct: 1176 QSLLDIINDILDLSKIEAGRVVLEQKPFDLVEMVESTLKPLGLLARDKGLTFLFSIAPGV 1235
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+V GD+ +L+QIL+N++ NA+KFT G + V+ + + G SL
Sbjct: 1236 P---DRVIGDKGRLRQILTNMVGNAIKFTKRGRVEVKVRLAEIQEPGRASL--------- 1283
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
F + D G GI + ++FE + Q+
Sbjct: 1284 -------------------------------LFLIKDEGIGISSAQIHSIFEKFEQIASS 1312
Query: 597 E----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GGTGLGL I ++LV +MGG I++ + RG+ F F + L
Sbjct: 1313 AHVQYGGTGLGLAISKALVEMMGGVIQV--ESELHRGSTFSFVLTL 1356
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KIL+ +D+ + A L+ G TVE NG A++ +++ +D +
Sbjct: 1381 KILLVEDNQVNSLFASHILQSWGHTVEIANNGRQAVETLKTR-------------EFDLV 1427
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
LMD MP+M+G +ATR IR E N IPI+A TA+ + ++ + GM+ ++ KPLN
Sbjct: 1428 LMDALMPVMDGEQATRLIRSGEAGNP-DIPIVAQTAYALQGDRERFLSVGMNDYISKPLN 1486
Query: 1120 RDHLMEAI 1127
D L +
Sbjct: 1487 LDELQRVL 1494
>gi|340788769|ref|YP_004754234.1| hybrid sensory histidine kinase in two-component regulatory system
with EvgA [Collimonas fungivorans Ter331]
gi|340554036|gb|AEK63411.1| Hybrid sensory histidine kinase in two-component regulatory system
with EvgA [Collimonas fungivorans Ter331]
Length = 1229
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 53/269 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++A+ S KS A SH+IR + I G++EL G +++ A
Sbjct: 721 AKEEADEASRAKSTFLATMSHEIRTPMNAIIGMLELVLKRGENGLWDRPSIKVAYDSAKT 780
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPSDGS 476
LLGL+ ILD +K+E+GK++L+ E ++ EL+E V +F +A +KG+ + +D + G
Sbjct: 781 LLGLIGDILDIAKIESGKLELVPERANLRELVEAVARVFDGLARQKGLTLRTFIDANAG- 839
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+V D ++ KQILSNL+SNA+KFT EG +++R V+
Sbjct: 840 ----VEVLVDPMRFKQILSNLVSNAIKFTQEGEVTIRLDVQ------------------- 876
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV--- 593
+ K R + +V DTG GI ++++ +F +VQ
Sbjct: 877 -------EEKDGR---------------LALQLQVSDTGSGIAQDEQAKLFAPFVQASAT 914
Query: 594 --KEGEGGTGLGLGIVQSLVRLMGGDIEI 620
+ E GTGLGL I + L ++MGGDI +
Sbjct: 915 RPRSAENGTGLGLAISRRLAQMMGGDIAL 943
Score = 75.5 bits (184), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 976 RYKQTEIEEEDGERSQAQK--PLRGK-KILVADDSMMLRRVAEINLRHLGATVEACENGE 1032
++ +E D + QA P G+ ++LVADD++ R V L++LG VE+ E+G
Sbjct: 956 KFTVATVEPLDTPQLQATTVAPKLGRLRVLVADDNVANRLVLCQQLQYLGHDVESAEDGR 1015
Query: 1033 AALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIA 1092
ALQ+ R+G +D ++ DC MP+M+GY+ R+IR E + + I
Sbjct: 1016 EALQIWRAG-------------SFDLVMTDCNMPVMSGYQLAREIRNETETPRCV--IWG 1060
Query: 1093 LTAHISGEEADKTIEAGMDVHLGKPLNRDHL 1123
TA+ EE + AGMD L KP+ D L
Sbjct: 1061 YTANAQPEEIQRCKAAGMDDCLFKPIGLDDL 1091
>gi|255034075|ref|YP_003084696.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
18053]
gi|254946831|gb|ACT91531.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
18053]
Length = 1287
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 153/323 (47%), Gaps = 55/323 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA + AE S KS AN SH+IR L G+ G +L ++ + + + A
Sbjct: 761 LEAREHAEAASKLKSEFLANMSHEIRTPLNGVVGFTDLL-MKTNLDETQQQYMSMVFQSA 819
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDG 475
N L+ ++N ILD SK+EAGK++L E D+ E+ V D+ A +K +E++L+ P+D
Sbjct: 820 NSLMDIINDILDFSKIEAGKLELTPEKTDLLEICGRVADMVTYQAQQKHLEMLLNIPAD- 878
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
+ +F V D V+L+QIL NLLSNAVKFT +G I ++ L
Sbjct: 879 -IPRF--VWCDSVRLRQILVNLLSNAVKFTIKGEIELKI------------------ELL 917
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+S L Y F F V DTG GI + ++ +FE + Q
Sbjct: 918 NKVSGLDYT----------------------FRFSVRDTGIGIDPQNQRRIFEAFSQEDS 955
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN---DN 648
GGTGLGL I SL+ LM +++ + E+G+ F F+V E DN
Sbjct: 956 STTKRFGGTGLGLTISNSLLGLMESRLQLTSE--LEKGSTFFFDVTFRAVEGEDRFEWDN 1013
Query: 649 NTQGEKELAGGDSAAGDTQLQHM 671
+ EK L D+A L+ M
Sbjct: 1014 VEEIEKILIVDDNAHAGQILKDM 1036
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 77/136 (56%), Gaps = 20/136 (14%)
Query: 1000 KILVADD---SMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
K+L+A+D +M+L + + +EA NG A++ R+ P
Sbjct: 1166 KVLIAEDHKINMLLVKSMLAKILVNSELIEAA-NGREAIEAFRAN--------RP----- 1211
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D + MD +MP MNGYEATR+IR E R++V PIIALTA E +K IEAGMD +L K
Sbjct: 1212 DIVFMDIQMPEMNGYEATREIRRAEGRSRV--PIIALTAGTVVGEREKCIEAGMDDYLTK 1269
Query: 1117 PLNRDHLMEAI-KYLH 1131
P+ +D L +I K+L+
Sbjct: 1270 PVLKDTLEASIRKWLY 1285
Score = 40.4 bits (93), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 27/129 (20%)
Query: 972 EGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENG 1031
EG R++ +EE + KIL+ DD+ ++ + L + + +G
Sbjct: 1004 EGEDRFEWDNVEEIE-------------KILIVDDNAHAGQILKDMLGNKRIASDYIPSG 1050
Query: 1032 EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPII 1091
E A L+ SG YD +L+D +MP +G E TRKIR+ + N+ PII
Sbjct: 1051 EEAYALLSSGKK------------YDVVLIDGQMPGWDGIETTRKIRKLSQGNKQ--PII 1096
Query: 1092 ALTAHISGE 1100
L E
Sbjct: 1097 LLNDSFDDE 1105
>gi|427404391|ref|ZP_18895131.1| hypothetical protein HMPREF9710_04727 [Massilia timonae CCUG 45783]
gi|425716942|gb|EKU79909.1| hypothetical protein HMPREF9710_04727 [Massilia timonae CCUG 45783]
Length = 1153
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 146/327 (44%), Gaps = 59/327 (18%)
Query: 324 MTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRA 383
+ G+ ML F+ + + L A ++ EA Q+AE ++ KS AN SH+IR
Sbjct: 372 LQFGITFDMLVFM--------RILSLRAKALR--EAMQRAETEARMKSEFLANMSHEIRT 421
Query: 384 ALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEED 443
+ I G+ L + A P L + ++ LLG++N ILD SK+ AGKM +
Sbjct: 422 PMNAIIGMSRLALM-ADPNPRLRNYVSKILGAGEHLLGIINDILDHSKIAAGKMSVEAAP 480
Query: 444 FDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVK 503
F + E+LE + +L KG+E+V G ++ GD ++L Q+L NL NAVK
Sbjct: 481 FSLDEMLEQLSNLVGVKTDAKGIELVFRVGPGVP---QRLVGDPLRLGQVLINLTGNAVK 537
Query: 504 FTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDEN 563
FT G I V A +P A G+
Sbjct: 538 FTERGEIVV-AVEVRPGAAGD--------------------------------------G 558
Query: 564 AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIE 619
+ F V DTG G+ + + +F+++ Q GGTGLGL I + LV LMGG I
Sbjct: 559 RVMLAFSVSDTGIGMTAGQLEYLFDSFTQADSSTTRKYGGTGLGLSISRQLVELMGGRIS 618
Query: 620 IVDKENGERGTCFRFNVFLAIREASAN 646
+ + G+CF F V L + + +
Sbjct: 619 V--QSTPGAGSCFIFTVALGLDDGQGD 643
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G +IL+A+D+ R VA + V+ NG A+++ R G
Sbjct: 808 LDGARILLAEDNANNREVALDFMAAARMQVDVAFNGVEAVRMAREG-------------D 854
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD +LMD +MP ++G+ A R IR++ + +PI+A+TAH + +++ AGM+ H+
Sbjct: 855 YDLVLMDIQMPELDGHAAARAIRQDPRLRA--LPIVAMTAHAMASDREQSRLAGMNDHVT 912
Query: 1116 KPLNRDHLM 1124
KP++ D L
Sbjct: 913 KPIDPDLLF 921
>gi|254411499|ref|ZP_05025276.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
gi|196182000|gb|EDX76987.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
Length = 524
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 158/336 (47%), Gaps = 46/336 (13%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A +QAE + KS+ AN SH++R+ L GI G +L + L + C +
Sbjct: 155 QAVEQAEAANRAKSVFLANMSHELRSPLTGILGYAQLLQKATDCTPLQQKGLGVIYQCGS 214
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N ILD SK+EA K+++ + D L + +LF A K ++ P
Sbjct: 215 HLLTLINDILDLSKIEAQKLEIFPDYIDFCLFLNHLAELFKFKAQEKKLKFAYFPLTSLP 274
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA-IGNPSLSSSRHGFLQ 536
++ D +L+Q+L NLLSNA+KFT +G ++++ V+ S + + ++SSR
Sbjct: 275 ---PEIYVDEKRLRQVLINLLSNAIKFTHQGSVTLKVSVRSYSCELNDHKVTSSR----- 326
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
+ K + L + FE++DTG GI EKR+ +F + QV E
Sbjct: 327 -------QTDKVQKTLANIR------------FEIEDTGIGITPEKREKIFLPFEQVMES 367
Query: 597 EG---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA-----NDN 648
GTGLGL I + ++ LMG I + N RG+ F F++ + + ND+
Sbjct: 368 SHSPEGTGLGLTISKKILVLMGSKIFLESCPN--RGSKFWFDLDVLTNLPRSYFTMINDS 425
Query: 649 NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSI 684
+Q + G +S H + +P P L +
Sbjct: 426 QSQTLSQELGDES--------HQIINTLSPEPELVV 453
>gi|428311673|ref|YP_007122650.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428253285|gb|AFZ19244.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1153
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 141/290 (48%), Gaps = 57/290 (19%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA + A S KS AN SH+IR + G+ G+ EL + E ++ + V A
Sbjct: 278 VEAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTEL-LAKTDLNPEQVDFVQTLRVSA 336
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+LL LLN ILD SK+EA +M+L ++FD+ +EDV DL A KG+E+ + D +
Sbjct: 337 ENLLTLLNDILDFSKLEASEMRLEIQEFDLNRCIEDVADLLATAAQSKGLELAV-LIDNN 395
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V + ++ GD +L+QIL NL+ NA+KFT G + ++ ++ +S +
Sbjct: 396 VPR--QLLGDAHRLRQILMNLVGNAIKFTFAGEVVIQVSLE---------FETSTYS--- 441
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
E F V DTG GI +K +F+++ QV
Sbjct: 442 -----------------------------ELRFSVTDTGIGIAPADQKKLFQSFSQVDTS 472
Query: 597 ----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF---RFNVFLA 639
GG+GLGL I + LV LMGG+I + RG F R++V +A
Sbjct: 473 STRQHGGSGLGLAICKQLVELMGGEIGV-----ASRGGAFVAGRWSVKVA 517
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 1046 RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT 1105
R L +PYD ILMDC+MPIM+GYEAT+ +R E ++ + +IA+TA+ + +K
Sbjct: 905 RSLMPSSAVPYDIILMDCQMPIMDGYEATQHLRAFEGASRRTV-VIAMTANALVGDREKC 963
Query: 1106 IEAGMDVHLGKPLNRDHLMEAIK 1128
+ A MD ++ KP+ + L + ++
Sbjct: 964 LAADMDDYISKPVRLEELEQVLE 986
>gi|239625343|ref|ZP_04668374.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519573|gb|EEQ59439.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 946
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 154/325 (47%), Gaps = 59/325 (18%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASH 379
+ + + VL+S ++ +F +A K + L ++AE +S K + SH
Sbjct: 528 FIAIFSAFVLLSAISILFI-MKARLKNAMIQGEL-------EKAEAQSRAKGEFLSRMSH 579
Query: 380 DIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQL 439
+IR + I GL L +E +ETNL+++ + LL L+N ILD S++E GKM++
Sbjct: 580 EIRTPMNAIMGLANLTCMEERLPERVETNLKKILSSSQYLLSLINDILDMSRIENGKMEI 639
Query: 440 IEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLS 499
++E F++ LL D+ + A KG+ +D + S ++GD V+L+Q+L NLLS
Sbjct: 640 MDESFNLRHLLSDLEGMMRSQAESKGILFTVDLG----IIHSDIQGDPVRLRQVLVNLLS 695
Query: 500 NAVKFTSE-GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAA 558
NAVKFT E G + + V
Sbjct: 696 NAVKFTPENGQVKL-----------------------------------------LVQET 714
Query: 559 QRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMG 615
+ DE F F V D G GI +E +K +F+++ Q+ GTGLGL I ++V MG
Sbjct: 715 ESDETKAAFLFSVKDNGIGIEEEYQKKIFDSFEQIGSSSAKSAGTGLGLPISSNIVNAMG 774
Query: 616 GDIEIVDKENGERGTCFRFNVFLAI 640
G++++ + + +G F F+V +
Sbjct: 775 GELKV--RSSPHKGAEFYFHVVFQL 797
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 10/140 (7%)
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
++ PL G +IL+A+D+ + +A L+ GA VE NG+ AL+
Sbjct: 812 KTPGAAPLDGVRILLAEDNDLNAEIATELLQMNGANVERVSNGQEALEHFT--------- 862
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA 1108
G+P Y ILMD MP+M+G EATR+IR IPIIA+TA+ E++D ++A
Sbjct: 863 GSPA-GTYHVILMDIRMPVMDGLEATRRIRASADPAGSSIPIIAMTANSFKEDSDAAVQA 921
Query: 1109 GMDVHLGKPLNRDHLMEAIK 1128
GM + KP++ +L++ ++
Sbjct: 922 GMTGFVSKPVDMAYLLDVLR 941
>gi|345869886|ref|ZP_08821842.1| integral membrane sensor hybrid histidine kinase [Thiorhodococcus
drewsii AZ1]
gi|343922748|gb|EGV33447.1| integral membrane sensor hybrid histidine kinase [Thiorhodococcus
drewsii AZ1]
Length = 779
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 142/290 (48%), Gaps = 59/290 (20%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN----LRQMN 413
+A AE S+ KS A+ SH+IR + GI G+ EL + G++L+ +R +
Sbjct: 258 QARDAAEAGSLAKSQFLASMSHEIRTPMNGIIGMAELLW-----GTQLDERQRHFVRTVQ 312
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
V A LLG+++ +LD SK+EAG+++L +FD+ L+ DL A RKG+E++ S
Sbjct: 313 VSAESLLGIISDVLDFSKIEAGRLELEHVEFDLHALMGRTSDLLSETARRKGLELMTRIS 372
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
S+V GD +L+QIL NL+SNAVKFT G++ +
Sbjct: 373 PHCS---SRVMGDPGRLRQILMNLVSNAVKFTETGYVQL--------------------- 408
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
S+SCL + E+ + V DTG G+ E++ +F+ + Q
Sbjct: 409 ---SLSCL-----------------EETEHEVRVRIAVRDTGIGLSPEEQSRIFDRFSQA 448
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
GGTGLGL I + LV LM G + + D G G+ F+ + L+
Sbjct: 449 DSSTSRRYGGTGLGLAITKQLVDLMHGTLTL-DSLPGH-GSVFQIELTLS 496
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 988 ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAAL-QLVRSGLNDQR 1046
+R ++P G ++LVA+D+ + + V E L LG C +G+A L +L RS
Sbjct: 646 DRPGGEQPSLGLRVLVAEDNPVNQDVIESMLNALGCKAVLCADGQALLAELARS------ 699
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI 1106
YD +LMDC+MP+M+GYE TR++R E+ ++P+IALTA+ + ++ +
Sbjct: 700 --------DYDLVLMDCQMPLMDGYETTRRLRSREQARGEYLPVIALTAYAMEGDRERAL 751
Query: 1107 EAGMDVHLGKPLNRDHLMEAIK 1128
AGMD +L KP L E ++
Sbjct: 752 AAGMDDYLVKPFKLADLAEVLR 773
>gi|127511840|ref|YP_001093037.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
gi|126637135|gb|ABO22778.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
Length = 919
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 137/293 (46%), Gaps = 56/293 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE S KS + SH++R + + G +EL + G E + + + AN+
Sbjct: 395 AKERAEIASQAKSEFLSMISHELRTPMNAVIGALELLSLADKSGEERDL-IETASTSANN 453
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG----VEVVLDPSD 474
L+ +LN ILD +K+E+GKMQL ++DF + ++ D++ F PVA R+G V+ L+ D
Sbjct: 454 LIYILNDILDINKIESGKMQLEQQDFHLAGVIADLIKSFSPVASRQGLRFAVQEALELPD 513
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
V+GD VK++QILSNLLSNA+KFT H
Sbjct: 514 W-------VEGDIVKVRQILSNLLSNAMKFT--------------------------HST 540
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+ C+ + ++++ F V D G GI K +K +F +VQ +
Sbjct: 541 QEQTGCVSLN----------ITVGEQNDIVTRVRFTVTDNGIGIDKATQKRLFTPFVQAQ 590
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
GGTGLGL I L LMGG I + E G +F V L A
Sbjct: 591 RSTTRNYGGTGLGLAICGKLTNLMGGSISL----KSELGQGAQFCVELPFWRA 639
Score = 60.5 bits (145), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 20/146 (13%)
Query: 993 QKPLRGKK----ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
Q+P+ G K ILV +D+ + +++ L LG E+G A + L +S
Sbjct: 785 QEPMPGLKGDADILVVEDNPLNQKLILKQLDMLGYRCNLAEDGLAGVHLWQSA------- 837
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIE 1107
Y IL DC MP ++GY+ +++IR+ E Q +PI+A+T E D
Sbjct: 838 ------DYKLILTDCHMPNLDGYDMSKQIRQIENSTQRKSVPIVAITGAAMATELDDCYR 891
Query: 1108 AGMDVHLGKPLNRDHLMEAIK--YLH 1131
+GM+ + KP+ L + I+ Y H
Sbjct: 892 SGMNDFVSKPVQLRDLKKVIQKWYRH 917
>gi|411116224|ref|ZP_11388712.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
gi|410713715|gb|EKQ71215.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
Length = 1075
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 144/289 (49%), Gaps = 36/289 (12%)
Query: 351 ASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR 410
A+L K +E+ + A R KS+ AN SH++R L I G +L + + L
Sbjct: 571 AALQKAVESAENANRA---KSVFLANMSHELRTPLNIILGFTQLLIRGGSLTPQQQEQLN 627
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
+N LL L+N +L+ SK+EAG++ L E +FD +LL+ + +F A KG++ +
Sbjct: 628 TINRSGEHLLTLINDVLEMSKIEAGRVTLNETNFDFHDLLDWLYQMFQFKAQSKGLQFTI 687
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+ ++ ++ ++ D KL+Q+L NL+ NA+KFTSEG + +R + + SS
Sbjct: 688 THVN-TLPEY--IRTDESKLRQVLVNLIGNAIKFTSEGTVILRVRSQASEPSPSSPSSSP 744
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+ + + TFEV+DTG GI K +F+ +
Sbjct: 745 -------------------------SPIPHSPSPLTLTFEVEDTGPGISPTDLKRLFQPF 779
Query: 591 VQVKEGEG---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
VQ + G+ GTGLGL I Q V+LMGG+I GE G F+F++
Sbjct: 780 VQTETGQKSQEGTGLGLAISQKFVQLMGGEI-TASSVYGE-GARFQFHI 826
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R +IL+ +D R + LR +G V NG+ A+ +Q + +P
Sbjct: 853 RTYRILIVEDKPDNRHILLELLRPVGFEVYEATNGQEAI--------EQWETWSP----- 899
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDVHLG 1115
D I MD MP+M+GYEAT++I+ N P IIALT + E+ +E G +
Sbjct: 900 DLIWMDIRMPVMDGYEATKRIKSASLANNRKPPIIIALTGSVFEEDRKVALEMGCSDFVR 959
Query: 1116 KPLNRDHLMEAI-KYL 1130
KP + + E + +YL
Sbjct: 960 KPFRTEEIFEKMAEYL 975
>gi|396500328|ref|XP_003845692.1| similar to two-component sensor protein histidine protein kinase
[Leptosphaeria maculans JN3]
gi|312222273|emb|CBY02213.1| similar to two-component sensor protein histidine protein kinase
[Leptosphaeria maculans JN3]
Length = 2472
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 157/332 (47%), Gaps = 68/332 (20%)
Query: 329 LISMLTFVFKSARAAR-KEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAG 387
++ M ARAA K A I+ M+ ++A + KSL AN SH++R L G
Sbjct: 1936 MLEMQKRALAQARAAEIKAKEAEAIAIRNMKLKEEAAKA---KSLFLANVSHELRTPLNG 1992
Query: 388 ITGLIELCYVEAGP-GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV 446
+ G+ EL ++A P E + VCA+ LL ++N +LD SK+EAGKM ++E +
Sbjct: 1993 VIGMSEL--LKASPLNGEQAGYADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPLSL 2050
Query: 447 GELLEDVVDLFHPVAMRKGV----EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAV 502
E + +VV +G+ E+ LDP V GD V+L Q++ NLLSN+
Sbjct: 2051 NETITEVVRALAYTNAERGLKTIEELYLDPE-------MLVMGDPVRLHQVMMNLLSNSY 2103
Query: 503 KFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562
KFT G ++VRA V Q +
Sbjct: 2104 KFTPRGSVTVRAVVD-----------------------------------------QEAD 2122
Query: 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVR-LMGGD 617
+ ++ T V DTG GIP+E++K +F + Q++ GGTGLGL I ++L+ +M G
Sbjct: 2123 DWVDITCSVIDTGIGIPEEQKKKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGK 2182
Query: 618 IEIVDKENGERGTCFRFNV-FLAI-REASAND 647
+ + D G +GT F + F + RE A+D
Sbjct: 2183 VWL-DSVPG-KGTTVSFALRFQKVRREQGASD 2212
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+I +A+D+++ +R+A ++ LG +A +G + + ++ R P+ I
Sbjct: 2252 RICIAEDNLINQRIAISFVQKLGFKCDAYLDGFKTIDALERASDNGR--------PFHLI 2303
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMD +MP +GYEAT+ IR+ ++ IIA+TA + +K + +GM+ +L KP+
Sbjct: 2304 LMDVQMPHCDGYEATQLIRKHPNPEIRNVLIIAMTASAIEGDREKCLNSGMNNYLAKPV 2362
>gi|206580641|ref|YP_002238911.1| sensory box histidine kinase/response regulator [Klebsiella
pneumoniae 342]
gi|206569699|gb|ACI11475.1| sensory box histidine kinase/response regulator [Klebsiella
pneumoniae 342]
Length = 897
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 54/290 (18%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
++A + KS AN SH+IR + GI G+ +LC ++ +E L + A LL
Sbjct: 259 KEAREANEAKSAFLANMSHEIRTPMNGILGMTQLC-LDTPLTAEQREYLSLVMSSAQSLL 317
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
++N ILD S++E+GKMQ+ EE ++ ++ ++ P A KG+E+++D S +V +
Sbjct: 318 HIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISP-AVPEV 376
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
V G R L+QIL+NLL NA+KFT +G + + AI P+ SR
Sbjct: 377 LIVDGPR--LRQILTNLLGNALKFTHQGEVLL--------AIA-PADDESR--------- 416
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--- 597
+ F + DTG GI EK+K +FE + Q
Sbjct: 417 --------------------------WRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRR 450
Query: 598 -GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
GGTGLGL I LV LMGG++ +V+ + G G+ F F + L A+A+
Sbjct: 451 YGGTGLGLTISARLVSLMGGEL-MVESQPGA-GSEFAFTLPLEGLHAAAS 498
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 17/138 (12%)
Query: 994 KPLR---GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGA 1050
+P+R G IL+A+D+++ ++VA L LG E NG AL+ R+
Sbjct: 642 EPVRDQTGLHILLAEDNLVNQKVARRLLEQLGHRCEVVSNGREALERWRAAC-------- 693
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEKR-NQVHIPIIALTAHISGEEADKTIEAG 1109
+D +L+D +MP M+G A R +REE + H P +A+TAH + ++ + G
Sbjct: 694 -----WDLLLIDLQMPEMDGETAIRLLREETPALGRQHQPAMAMTAHAMQGDRERCLAMG 748
Query: 1110 MDVHLGKPLNRDHLMEAI 1127
D ++ KP++ + L EAI
Sbjct: 749 FDGYIAKPVSLEALREAI 766
>gi|359447438|ref|ZP_09237034.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
gi|358038719|dbj|GAA73283.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
Length = 789
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 153/314 (48%), Gaps = 56/314 (17%)
Query: 327 GVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALA 386
G LI++ + S ++ + + A L+K EA +QA + KS A+ SH+IR +
Sbjct: 244 GFLIAIGALI-GSLHSSEQRIETEAELVKAKEAAEQA---VIAKSEFLASMSHEIRTPMN 299
Query: 387 GITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV 446
G+ G++ L + +++ A LLG++N ILD SK+EAGK+ + F++
Sbjct: 300 GVLGMLNLIQT-TSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNL 358
Query: 447 GELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS 506
+LL ++V+ F A +++LD + S S++ D +L+QIL+NL++NA+KFT
Sbjct: 359 PKLLGEIVESFALKAESNNTQLILDTTHVST---SEIVCDPNRLRQILNNLIANAIKFTQ 415
Query: 507 EGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME 566
G + V A ++K I N +L +
Sbjct: 416 NGQVLVTATIEK--TIDNTTLECA------------------------------------ 437
Query: 567 FTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVD 622
+ DTG GI +K+K +F+++ Q GGTGLGL IV+ L LMGG++ +
Sbjct: 438 ----IIDTGIGISLDKQKQLFDSFTQADASTTRQYGGTGLGLAIVKQLCELMGGEVSVNS 493
Query: 623 KENGERGTCFRFNV 636
N G+ F F+V
Sbjct: 494 LPN--EGSTFAFSV 505
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 18/137 (13%)
Query: 988 ERSQAQKPLRGK-KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
E S P + K +L+ +D+ + + VA L+ T + E+GE AL + +
Sbjct: 651 ELSAMNTPKKAKGHVLLVEDNKVNQVVAGALLKQAELTFDIAEDGEDALTKLNQATAN-- 708
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIRE----EEKRNQVHIPIIALTAHISGEEA 1102
Y ILMDC+MPIM+GY+AT IRE +E R IPIIALTA+ +
Sbjct: 709 --------TYQLILMDCQMPIMDGYQATMAIREGLAGQENR---AIPIIALTANAMHGDK 757
Query: 1103 DKTIEAGMDVHLGKPLN 1119
+K + AGM+ +L KPL+
Sbjct: 758 EKCLNAGMNDYLSKPLD 774
>gi|357633693|ref|ZP_09131571.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|357582247|gb|EHJ47580.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 740
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 132/280 (47%), Gaps = 52/280 (18%)
Query: 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL 422
AE+ + KS AN SH+IR + GI G+ EL + P + + L+ A LL +
Sbjct: 351 AEKANRAKSEFLANMSHEIRTPMNGIMGMTELALLSEIP-DQTRSYLQMAKSSALHLLSI 409
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPSDGSVLKF 480
+N ILD SK+EAGK+ L ++FD+ L V D A + GV + V+DP+ + L
Sbjct: 410 INDILDLSKIEAGKLVLDCQEFDLLHALHAVCDPLAMTARKNGVALTCVIDPAVPAAL-- 467
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
GD+ + KQIL+N++ NAVKFT +G + V
Sbjct: 468 ---LGDKGRFKQILTNIVGNAVKFTRKGQVEV---------------------------- 496
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--- 597
+ ++A D F V D+G GIP + + +FE++ Q
Sbjct: 497 ----------GVRPADSAGGDAGRSRLLFWVRDSGIGIPAGRLEAIFESFAQATSSAHIE 546
Query: 598 -GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GGTGLGL I + V +MGG I V+ E G RG+ F F V
Sbjct: 547 FGGTGLGLPISKKFVEMMGGSI-WVESEEG-RGSTFSFTV 584
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 14/133 (10%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
G+R+ A +G +IL+ +D+ + + +A L+ G V +G AAL
Sbjct: 599 GDRAPAAGDGQGLRILLVEDNRVNQLLAADLLKARGHRVAIAGDGPAAL----------- 647
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI 1106
GA P+D + +D +P M+G E R++R + +PI+ALTAH E+ ++ +
Sbjct: 648 --GALRREPFDLVFLDIRLPGMDGEEVARQVRAGAAGDPA-VPIVALTAHALKEDRERFL 704
Query: 1107 EAGMDVHLGKPLN 1119
AGMD ++ KP+
Sbjct: 705 GAGMDDYISKPIE 717
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA-HISGEEADKTIEAGMDVH 1113
P+ ++D MP M+GYE R +R +E+ + +P+I LTA + A + E+G +
Sbjct: 48 PFALAIVDVLMPGMDGYELVRLLRGQEETKR--LPVIFLTALYPDPGHAFRGYESGAVDY 105
Query: 1114 LGKPLNRDHLMEAIKYL 1130
LGKP + + L+ +K
Sbjct: 106 LGKPFSPEILLYKVKVF 122
>gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
Length = 1236
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 143/293 (48%), Gaps = 53/293 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q AE ++ KS AN SH+IR + I G+++L ++ + L + A
Sbjct: 709 LEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTAQQKDYLEKAGFSA 767
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DPSDG 475
LL ++N ILD SK+EAGK++L F + ++L+ +DL A +GVE++L P
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTA 827
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ +KGD ++L Q+L NLLSNAVKFT G I
Sbjct: 828 GLI----LKGDPLRLGQVLINLLSNAVKFTQSGEI------------------------- 858
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+L + +RD + + F V DTG GI K++++ +F+ + Q
Sbjct: 859 ---------------ELGCEDVGERD-HRITLKFWVRDTGIGISKDQQEKLFDAFAQADG 902
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + LV +MGG ++ V E G G+ F F + I E +
Sbjct: 903 STTRKYGGTGLGLSISKHLVSMMGGKMQ-VQSELG-VGSTFSFTISFEIAEEA 953
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 15/129 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ + ++VA L+ G V NG+ AL ++ S P+D +L
Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIIDSR-------------PFDAVL 1160
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP+M+G A R +RE + +PIIA+TAH + +K++ AGM+ H+ KP+
Sbjct: 1161 MDIQMPVMDGLTAARALRERFSADV--LPIIAMTAHAMSGDREKSLAAGMNAHITKPIVL 1218
Query: 1121 DHLMEAIKY 1129
L E + +
Sbjct: 1219 TELFETLSH 1227
>gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
Length = 1236
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 143/293 (48%), Gaps = 53/293 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q AE ++ KS AN SH+IR + I G+++L ++ + L + A
Sbjct: 709 LEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTAQQKDYLEKAGFSA 767
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DPSDG 475
LL ++N ILD SK+EAGK++L F + ++L+ +DL A +GVE++L P
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTA 827
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ +KGD ++L Q+L NLLSNAVKFT G I
Sbjct: 828 GLI----LKGDPLRLGQVLINLLSNAVKFTQSGEI------------------------- 858
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+L + +RD + + F V DTG GI K++++ +F+ + Q
Sbjct: 859 ---------------ELGCEDVGERD-HRITLKFWVRDTGIGISKDQQEKLFDAFAQADG 902
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + LV +MGG ++ V E G G+ F F + I E +
Sbjct: 903 STTRKYGGTGLGLSISKHLVSMMGGKMQ-VQSELG-VGSTFSFTISFEIAEEA 953
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 15/129 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ + ++VA L+ G V NG+ AL ++ S P+D +L
Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIIDSR-------------PFDAVL 1160
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP+M+G A R +RE + +PIIA+TAH + +K++ AGM+ H+ KP+
Sbjct: 1161 MDIQMPVMDGLTAARALRERFSADV--LPIIAMTAHAMSGDREKSLAAGMNAHITKPIVL 1218
Query: 1121 DHLMEAIKY 1129
L E + +
Sbjct: 1219 TELFETLSH 1227
>gi|225390054|ref|ZP_03759778.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme
DSM 15981]
gi|225043882|gb|EEG54128.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme
DSM 15981]
Length = 1138
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 146/312 (46%), Gaps = 50/312 (16%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
EA ER KS A+ SHDIR L + GL L ++ L+++ +
Sbjct: 497 EALLNEERAGAAKSTFLASMSHDIRTPLNAVIGLTNLALCTPNDSKKVMECLQKIANSSQ 556
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LLGL+N +LD SK+E+GKMQL E +F++GE L VV + +G ++ +
Sbjct: 557 LLLGLINDVLDMSKIESGKMQLAETEFELGEWLAGVVTVIQSQTSVRGQHFDVNAWN--- 613
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
+ + GD V+L Q+L+N+L NAVKFT +G + S I +P +S+R
Sbjct: 614 ITHELLCGDTVRLSQVLTNVLGNAVKFTPKGG----EIYLEISEIPSPDPASAR------ 663
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
F F + DTG G+ +E +FE + +
Sbjct: 664 -----------------------------FVFRISDTGVGMSREYLSHIFEMFTREQNAY 694
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGE 653
+G GTGLG+ I + +V LMGG I V+ E G +GT F V +++R +S G
Sbjct: 695 SQGVQGTGLGMAITKRIVDLMGGSIR-VESEPG-KGTT--FTVEISVRLSSRQIPLAAGC 750
Query: 654 KELAGGDSAAGD 665
+ L G+ +G+
Sbjct: 751 RMLVIGEPGSGE 762
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R +L+A+D+ + R +A +R G TVEA ENG AL L AP Y
Sbjct: 1017 RPLHLLLAEDNEVSREIAVELIRMDGQTVEAVENGSQALSAY---------LSAPD-HTY 1066
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D IL+D MP+M+G+EA IR +K + +P+IALTA E + AG L K
Sbjct: 1067 DAILLDLHMPVMDGFEAAAAIRSSKKTSAAAVPVIALTASSEDEVRGEAARAGFGAVLSK 1126
Query: 1117 PLNRDHL 1123
P++ + L
Sbjct: 1127 PIDMEKL 1133
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+ +LV D++M + E+ LGA V+ NGE L AP YD
Sbjct: 891 RLLLVEDNAMNMEIAVEMLTGPLGAQVDKARNGEEGCAAF---------LQAPE-HTYDV 940
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
ILMD +MP++ G +A R+IR IPIIALTA+ E+ + + AGM+ + KP+
Sbjct: 941 ILMDLQMPVLGGLDAARRIRGSSHPQAADIPIIALTANAFEEDRREALAAGMNGFVSKPI 1000
Query: 1119 NRDHLMEAIK 1128
+ L IK
Sbjct: 1001 DFTVLTREIK 1010
>gi|441504880|ref|ZP_20986872.1| Sensor protein torS [Photobacterium sp. AK15]
gi|441427462|gb|ELR64932.1| Sensor protein torS [Photobacterium sp. AK15]
Length = 981
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 134/274 (48%), Gaps = 54/274 (19%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
KS A SH+IR + G+ G L + G L +N LL +LN ILD
Sbjct: 470 KSAFLATMSHEIRTPMNGVLGTASLL-ADTGLNKVQARYLDVINRSGESLLDILNDILDY 528
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV-KGDRV 488
SK+EAG + + DF + EL++DV D+ A+ K +++V D G + + GD
Sbjct: 529 SKIEAGHLDIRPRDFSLSELVKDVYDMLENRALAKHIKLVCDIEPG----LNDIWVGDAT 584
Query: 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKA 548
+++Q+L NL+SNA+KFT EG +++ + +P +
Sbjct: 585 RIRQVLVNLVSNAIKFTEEGEVTI---IVRPDPM-------------------------V 616
Query: 549 RGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE---GGTGLGLG 605
+GDL FEV+DTG GI +++++T+F+ + Q EG GGTGLGL
Sbjct: 617 KGDL---------------LFEVEDTGSGIAQDEQQTMFDAFKQSFEGRQAIGGTGLGLA 661
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
I + ++ M G+I + + G+CF F + LA
Sbjct: 662 ISKRIIEAMDGEIGV--HSTLDVGSCFWFTLSLA 693
Score = 46.6 bits (109), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+ +D+ + VAE L+ LG +V E+GE A Q + +D L
Sbjct: 713 ILLVEDNPVNSMVAEGFLKRLGHSVVIAEDGEQAEQAYSKQV-------------FDLAL 759
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVH-----IPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D +P +G ++R E N P++A +AH+ EE + + G L
Sbjct: 760 LDINLPDTDGVTLLHRLRHIESSNLKEGRFEPTPMVAFSAHVFSEEVESYLAEGFAGFLP 819
Query: 1116 KPLNRDHLMEAI 1127
KPL L+E I
Sbjct: 820 KPLVEKQLVETI 831
>gi|290509876|ref|ZP_06549247.1| sensory box histidine kinase/response regulator [Klebsiella sp.
1_1_55]
gi|289779270|gb|EFD87267.1| sensory box histidine kinase/response regulator [Klebsiella sp.
1_1_55]
Length = 897
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 54/290 (18%)
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
++A + KS AN SH+IR + GI G+ +LC ++ +E L + A LL
Sbjct: 259 KEAREANEAKSAFLANMSHEIRTPMNGILGMTQLC-LDTPLTAEQREYLSLVMSSAQSLL 317
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
++N ILD S++E+GKMQ+ EE ++ ++ ++ P A KG+E+++D S +V +
Sbjct: 318 HIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISP-AVPEV 376
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
V G R L+QIL+NLL NA+KFT +G + + AI P+ SR
Sbjct: 377 LIVDGPR--LRQILTNLLGNALKFTHQGEVLL--------AIA-PADDESR--------- 416
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--- 597
+ F + DTG GI EK+K +FE + Q
Sbjct: 417 --------------------------WRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRR 450
Query: 598 -GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAN 646
GGTGLGL I LV LMGG++ +V+ + G G+ F F + L A+A+
Sbjct: 451 YGGTGLGLTISARLVSLMGGEL-MVESQPGA-GSEFAFTLPLEGLHAAAS 498
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 17/138 (12%)
Query: 994 KPLR---GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGA 1050
+P+R G IL+A+D+++ ++VA L LG E NG AL+ R+
Sbjct: 642 EPVRDQTGLHILLAEDNLVNQKVARRLLEQLGHRCEVVSNGREALERWRAAC-------- 693
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEKR-NQVHIPIIALTAHISGEEADKTIEAG 1109
+D +L+D +MP M+G A R +REE + H P +A+TAH + ++ + G
Sbjct: 694 -----WDLLLIDLQMPEMDGETAIRLLREETPALGRQHQPAMAMTAHAMQGDRERCLAMG 748
Query: 1110 MDVHLGKPLNRDHLMEAI 1127
D ++ KP++ + L EAI
Sbjct: 749 FDGYIAKPVSLEALREAI 766
>gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
Length = 1236
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 143/293 (48%), Gaps = 53/293 (18%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
+EA Q AE ++ KS AN SH+IR + I G+++L ++ + L + A
Sbjct: 709 LEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ-RTSLTAQQKDYLEKAGFSA 767
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL-DPSDG 475
LL ++N ILD SK+EAGK++L F + ++L+ +DL A +GVE++L P
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTA 827
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
++ +KGD ++L Q+L NLLSNAVKFT G I
Sbjct: 828 GLI----LKGDPLRLGQVLINLLSNAVKFTQSGEI------------------------- 858
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ--- 592
+L + +RD + + F V DTG GI K++++ +F+ + Q
Sbjct: 859 ---------------ELGCEDVGERD-HRITLKFWVRDTGIGISKDQQEKLFDAFAQADG 902
Query: 593 -VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
GGTGLGL I + LV +MGG ++ V E G G+ F F + I E +
Sbjct: 903 STTRKYGGTGLGLSISKHLVSMMGGKMQ-VQSELG-VGSTFSFTISFEIAEEA 953
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D+ + ++VA L+ G V NG+ AL ++ D R P+D +L
Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDII-----DSR--------PFDAVL 1160
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP+M+G A R +RE + +PIIA+TAH + +K++ AGM+ H+ KP+
Sbjct: 1161 MDIQMPVMDGLTAARALRERFSADV--LPIIAMTAHAMSGDREKSLAAGMNAHITKPIVL 1218
Query: 1121 DHLMEAIKY 1129
L E + +
Sbjct: 1219 TELFETLSH 1227
>gi|418300342|ref|ZP_12912168.1| two component sensor kinase/response regulator hybrid
[Agrobacterium tumefaciens CCNWGS0286]
gi|355533755|gb|EHH03075.1| two component sensor kinase/response regulator hybrid
[Agrobacterium tumefaciens CCNWGS0286]
Length = 1224
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 135/290 (46%), Gaps = 61/290 (21%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMN----VCAN 417
+AE KS AN SH+IR + G+ G+ EL S L+T + N
Sbjct: 665 RAEAADRAKSEFLANMSHEIRTPMNGVLGMAELL-----AKSNLDTRQKTFTDIIVKSGN 719
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL ++N ILD SK+EAG+M+L FD E +EDVV L A+ K +E+++ D SV
Sbjct: 720 ALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKDIELIV-RIDASV 778
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
F KV GD + +QI++N++ NAVKFT GH+ V + A
Sbjct: 779 --FGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVELSARSAEAS--------------- 821
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
EA+ + V+D+G GIP +K +T+F+ + QV +G
Sbjct: 822 ---------------EAI-----------LSLRVEDSGIGIPADKLETIFDKFSQV-DGS 854
Query: 598 G-----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GTGLGL I LV L G I +V +G+ F N+ + E
Sbjct: 855 ATRRHEGTGLGLAITVGLVGLFDGAINVVSDVG--KGSAFEVNIPFQVTE 902
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 19/163 (11%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQKPLRGK----KILVADDSMMLRRVAEINLRHLGATVE 1026
GEG+ R + +E + P R + +LVA+D+ + + V L+ G
Sbjct: 1059 GEGAIRPENGAVERKQRADISPAVPTRHRPSLVDVLVAEDNDVNQIVFTQILQQAGLRFL 1118
Query: 1027 ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKR--N 1084
NG+ A+Q + P I ILMD MP+MNG++AT+ IR E+ +
Sbjct: 1119 IVGNGKKAVQAWQEN--------NPAI-----ILMDVSMPVMNGHQATQAIRAAERMAAD 1165
Query: 1085 QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
H+PII +TAH + + +EAGMD +L KP++ + L + I
Sbjct: 1166 GRHVPIIGVTAHTQEADRELCLEAGMDDYLSKPISPETLEDKI 1208
Score = 47.8 bits (112), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 14/133 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV DD+ + RR+ LR G A E+G + + + L + LG D I
Sbjct: 918 RVLVIDDNDVNRRILTEQLRSWGVDGHAVEDGPSGIAV----LQEAASLG----FSLDAI 969
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP-- 1117
++D MP+MNG + +IR + + + + I + + + G+E T + + HL KP
Sbjct: 970 ILDYHMPVMNGLDVVERIRADARFDDIAI-VFLTSMDVVGDETLFT-DLNVQAHLMKPAR 1027
Query: 1118 --LNRDHLMEAIK 1128
L R L + ++
Sbjct: 1028 ARLLRSTLFDVVR 1040
>gi|317050262|ref|YP_004111378.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
indicum S5]
gi|316945346|gb|ADU64822.1| ATP-binding region ATPase domain protein [Desulfurispirillum
indicum S5]
Length = 777
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 163/394 (41%), Gaps = 86/394 (21%)
Query: 374 FANASHDIRAALAGITGLIELCY--VEAGPGSELETNLRQMNVCANDLLGLLNSILDTSK 431
AN SH++R L I G E+ + AG ++ +L ++N LL ++N ILD SK
Sbjct: 286 LANMSHELRTPLNAIIGYSEMTQEDIAAGNTQSVQQDLEKINKAGLHLLSIVNDILDISK 345
Query: 432 VEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG--VEVVLDPSDGSVLKFSKVKGDRVK 489
+EAGKM L EDFD+ +LL DVV + P+ ++G ++VL P G + D+ K
Sbjct: 346 IEAGKMDLFLEDFDITQLLHDVVAIMTPLMEKQGNQFQLVLSPDIG------MMHADQTK 399
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
++QIL NLLSNA KFT +G I+V HG
Sbjct: 400 VRQILINLLSNATKFTHQGEITVEV---------------QNHG---------------- 428
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLG 605
V DTG G+ E+ +F+ + Q GGTGLGL
Sbjct: 429 ---------------EHIVVSVHDTGIGMDPEQVDRLFKAFTQADASTTRKYGGTGLGLS 473
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGD 665
I Q +MGG I + G F V L + GEK +G+
Sbjct: 474 ISQHFCHMMGGSIRV----ESTPGKGSHFTVQLPRKTLRPPAQQPAGEKTTPTTIQGSGE 529
Query: 666 TQLQHMNLTVKAPSPSLSIRTNSPRL-NILSPGSRHEGSHVVLLIANEERRRIAQKFME- 723
H+ L V + P + +I+S EG VV ++ +A+KF+
Sbjct: 530 ----HVILIVD----------DDPVVRDIISRSLVREGYSVVQASDGKQALELAEKFLPT 575
Query: 724 --NLGINVSAVSRWERLHSTLKRLKSKFGSIHSP 755
L + + + W+ L +LK+ + H P
Sbjct: 576 AITLDVMMPGMDGWQ----VLSQLKANSQTRHIP 605
Score = 41.6 bits (96), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+ DD ++R + +L G +V +G+ AL+L A LP I
Sbjct: 532 ILIVDDDPVVRDIISRSLVREGYSVVQASDGKQALEL------------AEKFLP-TAIT 578
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
+D MP M+G++ +++ + HIP+I +T E G +L KP++R
Sbjct: 579 LDVMMPGMDGWQVLSQLKANSQTR--HIPVIMVTI---LNEKSTGFSLGASEYLVKPVDR 633
Query: 1121 DHLMEAI-KYLH 1131
+ L + I +Y H
Sbjct: 634 EVLRDVISRYRH 645
>gi|239626561|ref|ZP_04669592.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516707|gb|EEQ56573.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 686
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 149/289 (51%), Gaps = 50/289 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
M A + A+ S KS A SHDIR + I G+ + + +E L ++N+ +
Sbjct: 291 MTAYETAKEASEAKSSFLAQMSHDIRTPMNAIIGMTAIAMSHSHEPERVEDCLEKINMSS 350
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
+ LL L++ +LD S++E GKMQL++ F + +L+++VV + P A +G + +D +D
Sbjct: 351 SHLLALIDDVLDMSRIEKGKMQLMDAPFCMDKLVDEVVTIIRPSAEERGHSLKVDTAD-- 408
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
LK ++ GD +L+Q+L NL+SN+VK+T G+ +V+ VK+
Sbjct: 409 -LKHRRLIGDSGRLRQVLLNLMSNSVKYTP-GNGTVKLTVKE------------------ 448
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV---QV 593
AQR F F V+D+G G+ +E RK +F ++ +V
Sbjct: 449 --------------------VAQRVAGFGNFVFIVEDSGIGMTEEFRKYIFVPFLREEKV 488
Query: 594 KEGE-GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR 641
+E GTGLG+ I Q ++ M G I+ V+ E G RG+ RF V L+++
Sbjct: 489 RETHIQGTGLGMPITQGIINAMQGSIQ-VESEPG-RGS--RFTVTLSLK 533
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R ++LVA+D+ + + L G + E NG+ AL ++ + Y
Sbjct: 561 RAIRVLVAEDNELNMEIVRTILGEAGISTEGAFNGQEALNAFQASGDGY----------Y 610
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
ILMD +MP+M+GY A RKIRE IP++ALTA+ E+ K + AGM+ H+ K
Sbjct: 611 QAILMDLQMPVMDGYTAARKIRESTHPQAADIPVVALTANAFAEDIAKALAAGMNDHVAK 670
Query: 1117 PLNRDHLMEAIK 1128
P++ + L + ++
Sbjct: 671 PIDYERLFDVLE 682
>gi|359434928|ref|ZP_09225170.1| hypothetical protein P20652_3296 [Pseudoalteromonas sp. BSi20652]
gi|357918503|dbj|GAA61419.1| hypothetical protein P20652_3296 [Pseudoalteromonas sp. BSi20652]
Length = 983
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 140/285 (49%), Gaps = 54/285 (18%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLG 421
+AE ++ KS A SH+IR + G+ G++EL +E S +ET + A+ LLG
Sbjct: 459 KAEDAAIVKSQFLATMSHEIRTPMNGVLGMLELIQLEPLSKS-IETKVGIAKSSAHSLLG 517
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFS 481
++N ILD SK EAGK++L +F+ +L+ ++ A KG+E++LD L+ +
Sbjct: 518 VINDILDFSKAEAGKIELENINFNAKDLIGEIAAAQAFTAQEKGIEIILDLVR---LEPA 574
Query: 482 KVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCL 541
++ GD +++Q+L+NLLSNAVKFT+EG + + A + K
Sbjct: 575 QLCGDPGRIRQVLTNLLSNAVKFTNEGEVVISAQINKV---------------------- 612
Query: 542 FYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE---- 597
E + F +V D+G GI ++K++ +F + QV
Sbjct: 613 --------------------EKGLAFQIKVKDSGIGINEKKQQKLFTPFSQVDASTTREY 652
Query: 598 GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GGTGLGL I + L LM G I + E GT F +++ +
Sbjct: 653 GGTGLGLAICKQLCELMNGSISLT----SEAGTGSEFTATISVTQ 693
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 73/128 (57%), Gaps = 13/128 (10%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
+K R IL+ +D+++ +RV+ + L+ L + ENG+ A+ D+ + H
Sbjct: 854 EKLQRYAHILLVEDNLINQRVSTLMLKKLNCDITLAENGQQAV-----------DILSKH 902
Query: 1053 ILPY-DYILMDCEMPIMNGYEATRKIREEEKRNQ-VHIPIIALTAHISGEEADKTIEAGM 1110
Y + +LMDC+MP+M+G++AT IR + ++ I IIALTA+ + + +AGM
Sbjct: 903 EDGYFNVVLMDCQMPVMDGFDATAAIRNGDAGDKHKDIKIIALTANAMESDKQRCFDAGM 962
Query: 1111 DVHLGKPL 1118
D +L KP+
Sbjct: 963 DNYLSKPI 970
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 12/172 (6%)
Query: 957 MPNASVLLKTGNSSGEGSSRYKQTEIEEED-GERSQAQKPLRGKKILVADDSMMLRRVAE 1015
+ N S+ L + +G GS + + D ER + ++ +LV DD+ R V
Sbjct: 668 LMNGSISLTS--EAGTGSEFTATISVTQGDQKERYIHKLDIKNLSVLVVDDNKTNRIVIS 725
Query: 1016 INLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075
L H GA VE + AL++ +N+++ + YD ++D +MP M+G +
Sbjct: 726 QQLEHWGAQVELASDAYEALEMCEKRINNKQTM-------YDIAVLDMQMPGMDGIALCK 778
Query: 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ + ++P++ +T+ E A + +AG + KP+ ++ A+
Sbjct: 779 ALKAH--NDYKNMPLVMMTSIAGMEGAQRYSDAGFQAYFPKPVTTADMISAL 828
>gi|254412527|ref|ZP_05026301.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180837|gb|EDX75827.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 667
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 149/290 (51%), Gaps = 20/290 (6%)
Query: 354 IKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP--GSELETNLRQ 411
I+ +A ++AE + KS A+ SH++R L GI GL EL +A ++ +L+Q
Sbjct: 371 IEFQQAKEEAEAANRAKSAFLASMSHELRTPLNGILGLSELLREDAEDLGYTDFVPDLQQ 430
Query: 412 MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK--GVEVV 469
+ LL L+ ILD SK+EAGKM L E FD+ L+ +V P+ +K +EV
Sbjct: 431 IYDSGLHLLNLITDILDISKIEAGKMSLYLESFDISTLIVEVQKTVQPLIKKKTNTLEVH 490
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
S G++ DR K+KQ+L NL+SN+ KFT G I V + ++ GN +S
Sbjct: 491 GAASLGTMY------ADRTKVKQLLLNLISNSAKFTENGTI-VLSVTRESENEGNG--NS 541
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT-FEVDDTGKGIPKEKRKTVFE 588
R + ++ A D ++ A D+ ++ F V DTG G+ E+ +F+
Sbjct: 542 KRDAKMLLVNGELSVVSSATLDSASMPDAGNDDQTSDWVIFSVSDTGIGMTPEQAAKIFQ 601
Query: 589 NYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
+VQ + GGTGLGL I Q +MGG+I+ V+ E G G+ F F
Sbjct: 602 PFVQADDSTTKKYGGTGLGLAICQRFCEMMGGNIQ-VESEVG-VGSTFSF 649
>gi|407688166|ref|YP_006803339.1| two-component hybrid sensor and regulator [Alteromonas macleodii
str. 'Balearic Sea AD45']
gi|407291546|gb|AFT95858.1| two-component hybrid sensor and regulator [Alteromonas macleodii
str. 'Balearic Sea AD45']
Length = 707
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 159/342 (46%), Gaps = 64/342 (18%)
Query: 319 ILLIVMTVGVLISMLTFVFKSA-RAARKEMHLCASLIKQMEAT-QQAERKSMNKSLAFAN 376
+ L + T+ +L F+F R ++ SL +Q E++ +A R S KS ++
Sbjct: 166 VYLWLATLALLCIEAAFIFSPMERTVKRSFAKLTSLKEQAESSADEARRASKAKSEFLSS 225
Query: 377 ASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGK 436
SH++R + G+ G+IEL ++ S + L++ LL L+N ILD SK+EAGK
Sbjct: 226 MSHELRTPMNGLFGMIELA-IDNPDKSNI--YLKKAKTAGRQLLVLINDILDISKIEAGK 282
Query: 437 MQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDPSDGSVLKFSKVKGDRVKLKQIL 494
+++ + D+ ++L+DVV L RKG+E + DP V +KGD ++ QIL
Sbjct: 283 IKIEQAPVDLLQVLDDVVSLQRVYCQRKGLEFHYLKDPDLPHV-----IKGDITRISQIL 337
Query: 495 SNLLSNAVKFTSEGHISVRAC-VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLE 553
NLLSNA+KFT G ++++ K+P
Sbjct: 338 HNLLSNAIKFTELGSVTLKVTYTKRP---------------------------------- 363
Query: 554 AVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQS 609
N +F+V DTG GI K +F+ + Q + GGTGLGL I +
Sbjct: 364 ---------NGNYLSFDVIDTGIGIESSKLGNIFKKFEQADQSTTREYGGTGLGLSIAKQ 414
Query: 610 LVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQ 651
L +LM GDI + +G+ F F +A E+ D N +
Sbjct: 415 LAKLMLGDINVTSFVG--QGSTFSFT--MAAEESQLPDINVE 452
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 16/132 (12%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
+ K+IL+A+D+ + + + L+ G +NG+ A+ D+G H +
Sbjct: 588 KKKRILLAEDNDINAEIVKTILQSEGYKFLHVKNGKDAI-----------DVGKRH--QF 634
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D ILMDC MP+M G EA+ +R K +V PI+ALTA+ E+ ++ + AGM L K
Sbjct: 635 DLILMDCNMPVMGGIEASTILR---KALEVDTPIVALTANAFAEDKEECLAAGMTDFLAK 691
Query: 1117 PLNRDHLMEAIK 1128
PL++D L+ IK
Sbjct: 692 PLDKDTLLVCIK 703
>gi|384920925|ref|ZP_10020922.1| histidine kinase [Citreicella sp. 357]
gi|384465264|gb|EIE49812.1| histidine kinase [Citreicella sp. 357]
Length = 902
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 138/293 (47%), Gaps = 51/293 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A +AE S KS AN SH+IR + G+ G+ +L ++ E + + +
Sbjct: 322 AKLRAEAASRAKSAFLANMSHEIRTPMNGVVGMADLLR-DSDLSDEQKLYVDTIRSSGEA 380
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVL 478
LL ++N ILD SK+EA K+ L E FD+ + D+V L P A KGVE+++ D +
Sbjct: 381 LLVIINDILDYSKIEAEKLTLKPELFDLERTVHDIVLLLQPAAREKGVELLV---DYDMF 437
Query: 479 KFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSI 538
+ V GD +++QIL+NL+ NAVKFT++GH+ VR G ++
Sbjct: 438 LPTSVMGDPGRIRQILTNLIGNAVKFTADGHVMVRLT-----------------GLIE-- 478
Query: 539 SCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG 598
D + V+DTG GI +K VF + Q +
Sbjct: 479 ----------------------DSDRACIHITVEDTGIGIAADKIDHVFGEFNQADDDCN 516
Query: 599 ----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
GTGLGL I + LV +MGG E+ + + G+CF + L + E ++ D
Sbjct: 517 RQFEGTGLGLAITKRLVEMMGG--EVWAQSDLGLGSCFGLKIPLDVAEDTSAD 567
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D + MD MP M+G AT +IR+ E +PIIA+TAH + D +EAG+D +L K
Sbjct: 804 DIVFMDISMPKMDGKAATHEIRKIESAGGPCVPIIAVTAHAMAGDRDGILEAGLDDYLTK 863
Query: 1117 PLNRDHL 1123
PL R L
Sbjct: 864 PLRRTEL 870
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 19/147 (12%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
ED P + +L+ DD M R + L LG V AC+ GE AL +
Sbjct: 562 EDTSADPVPMPEGLRTVLLIDDHAMTRAILSAQLEGLGLRVTACQTGEDALDKMSE---- 617
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
P D ++ + ++P ++G + R++ +P+I L+A +D
Sbjct: 618 ----------PPDLVISEQDLPELSGLDLARQL----GWLVPDLPLILLSADPQA-ISDD 662
Query: 1105 TIEAGMDVHLGKPLNRDHLMEAIKYLH 1131
AG+ L KP+ R L+ A+ L+
Sbjct: 663 ARPAGVHAVLPKPVQRRRLISALASLY 689
>gi|30677959|ref|NP_849925.1| histidine kinase 4 [Arabidopsis thaliana]
gi|75168993|sp|Q9C5U0.1|AHK4_ARATH RecName: Full=Histidine kinase 4; AltName: Full=Arabidopsis
histidine kinase 4; Short=AtHK4; AltName: Full=Cytokinin
receptor CYTOKININ RESPONSE 1; Short=AtCRE1;
Short=Cytokinin receptor CRE1; AltName:
Full=Phosphoprotein phosphatase AHK4; AltName:
Full=Protein AUTHENTIC HIS-KINASE 4; AltName:
Full=Protein ROOT AS IN WOL 1; AltName: Full=Protein
WOODEN LEG
gi|13537200|dbj|BAB40776.1| histidine kinase [Arabidopsis thaliana]
gi|330250411|gb|AEC05505.1| histidine kinase 4 [Arabidopsis thaliana]
Length = 1080
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 167/361 (46%), Gaps = 43/361 (11%)
Query: 309 LVHRTSKRALILLIVMTVGVLISMLTFV--FKSARAARKEMHLCASLIKQMEATQQAERK 366
++ R ++A I L V+T L + F+ + AA + + + E +AE
Sbjct: 410 MICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAA 469
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGL 422
+ KS A SH+IR + GI G++ + +EL + R VC L+ L
Sbjct: 470 DVAKSQFLATVSHEIRTPMNGILGMLAMLL-----DTELSSTQRDYAQTAQVCGKALIAL 524
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N +LD +K+EAGK++L FD+ +L+DV+ LF + K +E+ + SD
Sbjct: 525 INEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVP---EI 581
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS------------AIGNPSLSSS 530
VKGD + +QI+ NL+ N+VKFT +GHI V+ + + S + + S
Sbjct: 582 VKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVS 641
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAM-EFTF--------EVDDTGKGIPKE 581
+ ++S Y+ R ++ +E ++ EF ++DTG GIP
Sbjct: 642 KQSSYNTLSG--YEAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLV 699
Query: 582 KRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
+ VF ++Q GGTG+GL I + LV LM G I + + + G+ F F
Sbjct: 700 AQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPH--IGSTFWFTAV 757
Query: 638 L 638
L
Sbjct: 758 L 758
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 24/179 (13%)
Query: 961 SVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKP------LRGKKILVADDSMMLRRVA 1014
+V++K +S G+ + E+ + + + P L GKKILV DD+++ RRVA
Sbjct: 901 TVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVNRRVA 960
Query: 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074
L+ GA V E+G+ AL L L PH +D MD +MP M+G+EAT
Sbjct: 961 AGALKKFGAEVVCAESGQVALGL----------LQIPHT--FDACFMDIQMPQMDGFEAT 1008
Query: 1075 RKIREEEKRN------QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
R+IR EK + H+PI+A+TA + ++ +++GMD ++ KP ++L +++
Sbjct: 1009 RQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSV 1067
>gi|436841513|ref|YP_007325891.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432170419|emb|CCO23790.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 1005
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 144/296 (48%), Gaps = 55/296 (18%)
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS 403
R H+ +L K +A +AE S KS A SH+IR + I G+ ++ E S
Sbjct: 473 RNSAHMSETLKKLEDAMARAEVASRTKSEFLAQMSHEIRTPMNSILGMADML-SETSLTS 531
Query: 404 ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
E E+ + L+ L+N ILD SK+E+GK+ L FD+ +L+++ + A +
Sbjct: 532 EQESYVTIFRDSGKALMSLINDILDLSKIESGKLALENTRFDIDKLVDEAAGIMSVSAWK 591
Query: 464 KGVEVV--LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
KG+ + PS S+ GD ++KQI+ NLLSNA+KFT+ G + +
Sbjct: 592 KGLYFACHVAPSTPSLF-----MGDPTRIKQIIVNLLSNAIKFTASGTVHLE-------- 638
Query: 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581
+SSS F++ GD +N R DTG GI ++
Sbjct: 639 -----ISSS---FIE-------------GDRVLINLTVR------------DTGIGINED 665
Query: 582 KRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFR 633
K K +F+N+VQ GGTGLGL I ++LV LMGG+I + + ++G G FR
Sbjct: 666 KVKVIFDNFVQADSSTTRKYGGTGLGLSITRNLVELMGGNISVRNLDSG--GAEFR 719
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 19/154 (12%)
Query: 979 QTEIEEEDGERSQAQ-KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
Q +I E ++ + + PLR ILVA+DS R + + L+ + G A+
Sbjct: 866 QKDIAEVPSDKDEPELPPLR---ILVAEDSGNNRMLLDFYLKDTPFRLTYASTGVEAV-- 920
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR-EEEKRNQVHIPIIALTAH 1096
D H +D +LMD MP NGYEATR+IR E + PI+ALTA
Sbjct: 921 ---------DFYKRH--NFDLVLMDMLMPEKNGYEATREIRMYENSKGYPETPIVALTAT 969
Query: 1097 ISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KY 1129
I E+ + I+AG ++ KP+ + L++ I KY
Sbjct: 970 IYAEDKENCIDAGCTDYMPKPIKKITLIKTILKY 1003
>gi|440681552|ref|YP_007156347.1| Cache sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428678671|gb|AFZ57437.1| Cache sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 807
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 150/329 (45%), Gaps = 59/329 (17%)
Query: 327 GVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALA 386
G LI +L + + + K+ A K++ A+ + KS AN SH++R L
Sbjct: 314 GTLIGVLVYFQSAEQTQLKKSKALADAAKEI-----ADSANNAKSEFLANMSHELRTPLN 368
Query: 387 GITGLIE-LCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFD 445
GI G + L + P EL+ + ++ C LL L+N ILD SK+EA K++L+ + F
Sbjct: 369 GILGYAQILGRSKVLPDKELQ-GVHIIHQCGYHLLTLINDILDLSKIEARKLELVSQAFH 427
Query: 446 VGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFT 505
+ L+ VV++ H A KG+E +P D + V D +L+Q+L NLL NA+KFT
Sbjct: 428 LPSFLQSVVEICHIRAQHKGIEFHYEPEDDLP---NGVNADEKRLRQVLINLLGNAIKFT 484
Query: 506 SEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAM 565
G ++ R R LE+ +
Sbjct: 485 DRGSVTFRV---------------------------------QRTGLES-------NGTV 504
Query: 566 EFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE---GGTGLGLGIVQSLVRLMGGDIEIVD 622
+ + DTG GI +F+ + QV E + GTGLGL I Q LV+LMGG I++
Sbjct: 505 QLCITIVDTGVGIAPADINKLFQTFEQVGEQKRKVEGTGLGLAISQQLVQLMGGKIQV-- 562
Query: 623 KENGERGTCFRFNVFLAIREASANDNNTQ 651
K G+ F F + L + AND + Q
Sbjct: 563 KSQFGVGSEFSFEIILPL----ANDWSQQ 587
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+ IL+ DD R V L LG + E+G+A L ++ L D
Sbjct: 603 RHILIVDDRWENRAVLLNLLEPLGFMITEAEHGQAGLDQIQQHLPD-------------L 649
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP+M+G+E R+IRE+E+ + ++ +A ++ + +I+AG D L KP+
Sbjct: 650 VITDLVMPVMDGFEMLRRIREQEELQ--SLKVLVSSASVAQIDQQMSIDAGGDDFLAKPV 707
Query: 1119 NRDHLM 1124
+ L
Sbjct: 708 QVNDLF 713
>gi|302810422|ref|XP_002986902.1| hypothetical protein SELMODRAFT_158365 [Selaginella moellendorffii]
gi|300145307|gb|EFJ11984.1| hypothetical protein SELMODRAFT_158365 [Selaginella moellendorffii]
Length = 905
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 165/335 (49%), Gaps = 35/335 (10%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQ-AERKSMNKSLAFANASHD 380
I +VG+L+ ++ V AA + ++ME + AE + KS A SH+
Sbjct: 276 ITTSVGILV-IVFLVGHILHAAINRIQKVEEDYRRMEDLKVLAESADIAKSQFLATVSHE 334
Query: 381 IRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND----LLGLLNSILDTSKVEAGK 436
IR + G+ G++++ ++L+ R A++ L+ L+N +LD +K+E+G+
Sbjct: 335 IRTPMNGVLGMLQMLM-----DTDLDPTQRDYAGTAHESGKQLIKLINEVLDQAKIESGR 389
Query: 437 MQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV-KGDRVKLKQILS 495
M+L FD+ +L+D++ LF KG+E+ + S+ K V GD +L QI++
Sbjct: 390 MELEMVPFDLRTILDDILCLFSAEIKDKGIELAVFVSE----KVPDVLVGDPARLHQIIT 445
Query: 496 NLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF--LQSISCLFYKNKKARGD-L 552
NL+ N+VKFT GHI V CV + + S GF ++S + + + D
Sbjct: 446 NLVGNSVKFTERGHIFV--CVHMEDEL---TTVSKEEGFDSCNTLSGMKAADPRLSWDSF 500
Query: 553 EAVNAAQRDENAMEFT-----FEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLG 603
+++ D N E T F V+DTG GIP + VF ++Q GGTG+G
Sbjct: 501 KSLVGGLEDRNCGELTDVRIVFNVEDTGVGIPLLAQDRVFTPFMQADSSTSRNYGGTGIG 560
Query: 604 LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
L I + LV LM G ++ V + G FRF+V
Sbjct: 561 LSISKCLVELMQGSMDFVSQPG--IGATFRFSVVF 593
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 18/162 (11%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACEN 1030
G GS R EI + S+ L GK+ILV DD+ + RRVA L GA VE E+
Sbjct: 746 GFGSKRLNGREI----SQGSRLHSLLSGKQILVVDDNKVNRRVAAGALTKYGARVECVES 801
Query: 1031 GEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN-QVHIP 1089
G+AA+ ++ +D MD +MP M+G+EATRKIRE E + + +P
Sbjct: 802 GKAAIARLQPSHE------------FDACFMDVQMPEMDGFEATRKIREAEGHDCKCRLP 849
Query: 1090 IIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
I+A+TA + D+ + GMD ++ KP + L +A+ KY
Sbjct: 850 ILAMTADLIQATRDECTKCGMDGYVSKPFEEEQLYKAVAKYF 891
>gi|218246123|ref|YP_002371494.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
gi|218166601|gb|ACK65338.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
Length = 1090
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 150/293 (51%), Gaps = 26/293 (8%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + A+ + KS A+ SH++R L I G ++ + E + NL ++
Sbjct: 582 QAKEAADAANRAKSEFLASMSHELRTPLNAILGFTQVMRRDRTLNPEHQQNLSIISRSGE 641
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N IL+ SK+EAG+ FD+ LL+++ + H A KG++++ + + V
Sbjct: 642 HLLELINDILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLIFERTP-EV 700
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ ++ D KL+Q+L NLL NA+KFT EG +++R + S + GF +S
Sbjct: 701 PQY--LETDEGKLRQVLINLLGNAIKFTEEGGVTLRV---------KSEVRSRKGGFRES 749
Query: 538 ISCLFYKNKKARGDLE--AVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+ DLE A+ D + TFEV+D+G GI E+ +F + Q +
Sbjct: 750 ATLRTI-------DLEKPALTPIIADSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTET 802
Query: 596 G---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
G + GTGLGL I + V+LMGG+I + +G+ F F++ + ASA
Sbjct: 803 GRQAQEGTGLGLPISRKFVQLMGGNISVSSILG--QGSLFAFSIKAKLTNASA 853
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL DD + R + L +G V NG+ AL++ + PH+ I
Sbjct: 874 RILSVDDRLESRLLLVKLLSSMGFEVRQASNGKEALEIWETW--------EPHL-----I 920
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MPI++GY+AT++I+ K +IALTA EE + + AG D + KP
Sbjct: 921 WMDMRMPIIDGYQATQRIKATTKGQ--GTVVIALTASAFEEERNMVLSAGCDDFMRKPFR 978
Query: 1120 RDHLMEAI 1127
+ L E I
Sbjct: 979 EEVLWEKI 986
>gi|411118666|ref|ZP_11391046.1| ammonium transporter [Oscillatoriales cyanobacterium JSC-12]
gi|410710529|gb|EKQ68036.1| ammonium transporter [Oscillatoriales cyanobacterium JSC-12]
Length = 1086
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 180/401 (44%), Gaps = 82/401 (20%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELE---TNLRQMNVC 415
A ++AE+ + KS AN SH++R L I G E+ E G+E E +L++++
Sbjct: 579 AKERAEQANQTKSQFLANMSHELRTPLNAIIGYSEMLQ-EDATGAEQERFIPDLQKIHGA 637
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR-KGVEVVLDPSD 474
LLGL+N +LD SK+EAGKM+L E FD+ ++ DVV+ P+ + + VV PSD
Sbjct: 638 GKHLLGLINDVLDLSKIEAGKMELYLETFDIANMVRDVVNTIQPLVQKQQNTLVVHCPSD 697
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
++ D KL+Q L NLLSNA KFT G I++
Sbjct: 698 IGIM-----HSDLTKLRQNLFNLLSNASKFTENGTITLTVA------------------- 733
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK 594
+ E+ + FT V DTG G+ ++ +F+ +VQ
Sbjct: 734 -------------------------KQESEVRFT--VSDTGIGMTADQIARLFQPFVQAD 766
Query: 595 EGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
GGTGLGL I Q ++MGGDI V E G+ T F ++L R
Sbjct: 767 ASTTRKYGGTGLGLTITQRFCQMMGGDIW-VQSELGQGST---FTMWLPERLQ------- 815
Query: 651 QGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRL-NILSPGSRHEGSHVVLLI 709
GE + + + H N + S +L + + P + ++L EG ++
Sbjct: 816 HGETLKSPAIAPIPTSPTLHSN---PSRSKTLLVIDDDPTMHDLLGRYLGKEGFDIIHAT 872
Query: 710 ANEERRRIAQKF---MENLGINVSAVSRWERLHSTLKRLKS 747
+ EE R+A++ M L + + ++ W + L RLKS
Sbjct: 873 SGEEGLRLARELRPSMITLDVMMPSMDGW----AVLSRLKS 909
Score = 40.8 bits (94), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 22/135 (16%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
P R K +LV DD + + L G + +GE L+L R L
Sbjct: 838 PSRSKTLLVIDDDPTMHDLLGRYLGKEGFDIIHATSGEEGLRLARE-------------L 884
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI--EAGMDV 1112
I +D MP M+G+ +++ + + +IP+I LT DKT+ G
Sbjct: 885 RPSMITLDVMMPSMDGWAVLSRLKSDPEL--ANIPVILLTM-----VDDKTMGYTLGATD 937
Query: 1113 HLGKPLNRDHLMEAI 1127
+L KP+NRD L+ +
Sbjct: 938 YLTKPVNRDCLLAVL 952
>gi|359436217|ref|ZP_09226335.1| sensor protein [Pseudoalteromonas sp. BSi20311]
gi|358029077|dbj|GAA62584.1| sensor protein [Pseudoalteromonas sp. BSi20311]
Length = 1111
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 153/314 (48%), Gaps = 56/314 (17%)
Query: 327 GVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALA 386
G LI++ + S ++ + + A L+K EA +QA + KS A+ SH+IR +
Sbjct: 566 GFLIAIGALI-GSLHSSEQRIETEAELVKAKEAAEQA---VIAKSEFLASMSHEIRTPMN 621
Query: 387 GITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV 446
G+ G++ L + +++ A LLG++N ILD SK+EAGK+ + F++
Sbjct: 622 GVLGMLNLIQT-TSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNL 680
Query: 447 GELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS 506
+LL ++V+ F A +++LD + S S++ D +L+QIL+NL++NAVKFT
Sbjct: 681 PKLLGEIVESFALKAESNNTQLILDTTHVST---SEIVCDPNRLRQILNNLIANAVKFTQ 737
Query: 507 EGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME 566
G + V A ++K + N +L +
Sbjct: 738 NGQVLVTATIEK--TLDNTTLECA------------------------------------ 759
Query: 567 FTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVD 622
+ DTG GI +K+K +F+++ Q GGTGLGL IV+ L LMGG++ +
Sbjct: 760 ----IIDTGIGISLDKQKQLFDSFTQADASTTRQYGGTGLGLAIVKQLCELMGGEVSVNS 815
Query: 623 KENGERGTCFRFNV 636
N G+ F F+V
Sbjct: 816 LPN--EGSTFAFSV 827
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 18/137 (13%)
Query: 988 ERSQAQKPLRGK-KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
E S P + K +L+ +D+ + + VA L+ T + E+GE AL + +
Sbjct: 973 ELSAINTPKKAKGHVLLVEDNKVNQVVAGALLKQAELTFDIAEDGEDALTKLNQATAN-- 1030
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIRE----EEKRNQVHIPIIALTAHISGEEA 1102
Y ILMDC+MPIM+GY+AT IRE +E R IPIIALTA+ +
Sbjct: 1031 --------TYQLILMDCQMPIMDGYQATMAIREGLAGQENR---AIPIIALTANAMHGDK 1079
Query: 1103 DKTIEAGMDVHLGKPLN 1119
+K + AGM+ +L KPL+
Sbjct: 1080 EKCLNAGMNDYLSKPLD 1096
>gi|386829361|ref|ZP_10116468.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386430245|gb|EIJ44073.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 611
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 144/312 (46%), Gaps = 65/312 (20%)
Query: 343 ARKEMHLCASLI-KQME--------ATQQAERKSMNKSLAFANASHDIRAALAGITGLIE 393
AR + HL SL+ KQ++ A + AE + KS AN SH++R L GI G +
Sbjct: 123 ARIQTHLHISLLQKQLQLAKTEAENAKESAETANRAKSRFLANMSHELRTPLNGILGYAQ 182
Query: 394 LCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDV 453
+ ++ + + + + LL L+N ILD SK+EA +M+L + DF + + L +V
Sbjct: 183 ILRHDSNLTPQQQEGINIIQRSGEYLLTLINDILDLSKIEADRMELYQSDFSLEQFLNNV 242
Query: 454 VDLFHPVAMRKGVEVVLDP----SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGH 509
VDLF A +K + + D + + L + ++GD +L+QIL NLL NA+KFT +G
Sbjct: 243 VDLFRMRAEQKDIRFIYDSPFVRKEKNALP-TAIRGDEKRLRQILINLLGNAIKFTEKGQ 301
Query: 510 ISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTF 569
+ R ++ + F
Sbjct: 302 VIFRV----------------------------------------------EKEHDKICF 315
Query: 570 EVDDTGKGIPKEKRKTVFENYVQV---KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENG 626
V+DTG GIP K + VF + Q+ + GTGLGL I LV +MGG ++I +
Sbjct: 316 SVEDTGIGIPSNKLEEVFLPFQQIGSHNQQMEGTGLGLSISNRLVNMMGGKLQITSQLG- 374
Query: 627 ERGTCFRFNVFL 638
+G+ F F + L
Sbjct: 375 -QGSRFWFTIHL 385
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+K+L+ DD + V + L+ LG + G+ A++ + L D
Sbjct: 410 RKVLIVDDQKFNQLVCKHLLQPLGFEISHAYTGQEAIEKTQE-------------LKPDV 456
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
ILMD MP M+G+ T +IR+ + I IIA +A ++ +++ +G D + KP+
Sbjct: 457 ILMDLVMPEMDGFTTTERIRKLPIASD--ITIIAASASAFSQDQQRSLASGCDDFIAKPI 514
Query: 1119 NRDHLMEAIKY 1129
D L++ +K+
Sbjct: 515 KADELLKKLKH 525
>gi|158425731|ref|YP_001527023.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS
571]
gi|158332620|dbj|BAF90105.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS
571]
Length = 1121
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 160/344 (46%), Gaps = 67/344 (19%)
Query: 312 RTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLI------------KQMEA 359
R + L ++++ VGV+ + +S R A++E +L+ K +A
Sbjct: 602 RGTLWTLYFVLMIIVGVVAWLFVLAQESRRVAQEESQRQTTLLMREIEAHKRTDAKLQKA 661
Query: 360 TQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDL 419
+ AE ++ KS SH++R L I G +L + + +R + + L
Sbjct: 662 KEVAEAANLAKSRYVVGISHELRTPLNAILGYAQLLERDTSIPAHRRDAIRVVRRSSEHL 721
Query: 420 LGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLK 479
GL++ +LD SK+EAG++ L ++ + +LL+ +VD+F A +G+E + S+
Sbjct: 722 SGLIDGLLDISKIEAGRLHLYRDEVRIRDLLDQLVDMFRLQASARGIEFIHMRSERLP-- 779
Query: 480 FSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSIS 539
+ V D +L+QIL NLLSNA+KFT++GH+++R
Sbjct: 780 -AVVFTDEKRLRQILINLLSNAIKFTAKGHVALRVT------------------------ 814
Query: 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG- 598
Y+N+ A FEV+DTG GI E+R +FE + + G
Sbjct: 815 ---YRNQVAE-------------------FEVEDTGIGIAPEERGRIFEPFERGSRGGAF 852
Query: 599 ---GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639
G GLGL I + L +MGG+I + K ++G+ F+ + L+
Sbjct: 853 NAIGIGLGLTITKLLTEIMGGEISL--KSELDKGSTFKVRLLLS 894
>gi|443324879|ref|ZP_21053602.1| signal transduction histidine kinase [Xenococcus sp. PCC 7305]
gi|442795515|gb|ELS04879.1| signal transduction histidine kinase [Xenococcus sp. PCC 7305]
Length = 652
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 141/267 (52%), Gaps = 22/267 (8%)
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPG--SELETNLRQMNVCANDLLGLLNSILDTSK 431
AN SH++R L GI GL +L VEA ++ +L Q+ LL L+ ILD SK
Sbjct: 389 LANMSHELRTPLNGILGLSDLLLVEAKESGYADFVPDLDQIQKSGTHLLTLIEDILDISK 448
Query: 432 VEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLK 491
+EA K+ + E FDV LL +V +L P+ + + ++ D L F + DR ++K
Sbjct: 449 IEADKVSIYPERFDVSTLLSEVGNLVMPMIQKNANLLKIEEQDD--LGF--MLNDRKRVK 504
Query: 492 QILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGD 551
QIL N+LSNA KFT EG I++ V + + P+L +R +S L K A +
Sbjct: 505 QILLNILSNAAKFTREGRITI--LVTRQARNFLPALVDARQ-----LSILNSK-PPATNN 556
Query: 552 LEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIV 607
++ A + + + F++ DTG G+ + + +F+ ++Q G GTGLGL I
Sbjct: 557 NQSQQVAHKPSDWI--IFQISDTGIGMKPVQVQNIFKPFIQADLGTTKKYAGTGLGLTIS 614
Query: 608 QSLVRLMGGDIEIVDKENGERGTCFRF 634
+S +MGG+I V+ + GE G+ F F
Sbjct: 615 KSFCEMMGGNIT-VESQVGE-GSTFTF 639
>gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 1442
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 138/285 (48%), Gaps = 53/285 (18%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K +A + AE + KSL AN SH+IR + GI G +EL E +E + +++ +
Sbjct: 804 KLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLELLG-ETELSTEQQDYVQEAHR 862
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV-VLDPS 473
+ LL L+N ILD SK+EAGK+ + E F V ++ED V L P A KG+E+ L S
Sbjct: 863 ASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTVVEDAVSLQAPKAREKGLEMHTLIKS 922
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ +V GD +L+QIL+NLLSNAVKFT G I V
Sbjct: 923 NVP----DEVVGDPARLRQILNNLLSNAVKFTHTGEILVI-------------------- 958
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
+E +N + + E FEV D+G GI E + +F+ + Q
Sbjct: 959 ------------------VETINESS---DKAEIAFEVSDSGIGIAPEDMEKLFQPFTQA 997
Query: 594 KEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
GGTGLGL I LVRLM G +++ K +G+ F F
Sbjct: 998 DASTTRKYGGTGLGLAISYELVRLMEGTMQVKSKLG--QGSKFYF 1040
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 21/137 (15%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVE-ACENGEA--ALQLVRSGLNDQRDLGAP 1051
P R + +LV D+ M + + ++ L G + AC EA ALQ Q+D
Sbjct: 1208 PARPRFLLVEDNEMNQKIIVKM-LEKRGMYCDLACSGAEALKALQ--------QKD---- 1254
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
YD + MDC+MP M+GYE T +IR+ E + H I+A+TA+ + +K ++AGMD
Sbjct: 1255 ----YDIVFMDCQMPEMDGYETTARIRQMEGEER-HTIIVAMTANAMEGDREKCLQAGMD 1309
Query: 1112 VHLGKPLNRDHLMEAIK 1128
++ KP++ L I+
Sbjct: 1310 DYISKPVDFQLLFNIIE 1326
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L+G ++L+ DD+ R++ L VE ++ E A+ ++ L A +
Sbjct: 1060 LKGARVLIVDDNSSNRKIIRTYLEDAQCLVEESDSAEKAITIL---------LSASAVKS 1110
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D +++D +MP MNG+E ++ +H +I LT+ +A + E G +L
Sbjct: 1111 FDVVIVDFQMPAMNGHELAAALKAIPSTRAIH--LIMLTSAAQKGDARRAKEHGFSGYLT 1168
Query: 1116 KPLNRDHLMEAI 1127
KP+ RD L++ I
Sbjct: 1169 KPVKRDELLQCI 1180
>gi|215878091|gb|ACJ63457.1| putative histidine kinase [Brassica rapa subsp. pekinensis]
Length = 1070
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 147/310 (47%), Gaps = 44/310 (14%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----N 413
E +AE + KS A SH+IR + GI G++ + +EL + R
Sbjct: 449 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLAMLL-----DTELSSTQRDYAQTAQ 503
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
VC L+ L+N +LD +K+EAGK++L FD+ +L+DV+ LF + KG+E+ + S
Sbjct: 504 VCGKALIALINEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVS 563
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG---NPSL--- 527
D VKGD + +QI+ NL+ N+VKFT +GHI V+ + + S G P+L
Sbjct: 564 DKVP---EIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDGAESKPALNGG 620
Query: 528 -------SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAM---EF--------TF 569
++S+ ++S Y+ R ++ E + EF
Sbjct: 621 VASEDITAASKPSSYNTLSG--YEAADGRNSWDSFKHLLSSEELLTSSEFEASSNVRLMV 678
Query: 570 EVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKEN 625
++DTG GIP + VF ++Q GGTG+GL I + LV LM G I V +
Sbjct: 679 SIEDTGIGIPLTAQGRVFMPFMQADSSTSRTYGGTGIGLSISKCLVELMRGQISFVSRP- 737
Query: 626 GERGTCFRFN 635
G+ F F
Sbjct: 738 -RVGSTFWFT 746
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 98/179 (54%), Gaps = 24/179 (13%)
Query: 961 SVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKP------LRGKKILVADDSMMLRRVA 1014
+V++K +S G+ + E+ + + + P L GKKILV DD+M+ RRVA
Sbjct: 887 TVIMKPLRASMIGACLQQVLELRKARQQHPEGSSPATLKSLLTGKKILVIDDNMVNRRVA 946
Query: 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074
L+ GA V E+G+ AL L L PH +D MD +MP M+G+EAT
Sbjct: 947 AGALKKFGAEVVCAESGQVALGL----------LQIPH--SFDACFMDIQMPQMDGFEAT 994
Query: 1075 RKIR------EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
R+IR +E+ + + H+PI+A+TA + ++ +++GMD ++ KP ++L +++
Sbjct: 995 RQIRMMEKEAKEKTKLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSV 1053
>gi|302792032|ref|XP_002977782.1| WOL, cytokinin response 1 [Selaginella moellendorffii]
gi|300154485|gb|EFJ21120.1| WOL, cytokinin response 1 [Selaginella moellendorffii]
Length = 905
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 166/335 (49%), Gaps = 35/335 (10%)
Query: 322 IVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQ-AERKSMNKSLAFANASHD 380
I +VG+L+ ++ V AA + ++ME + AE + KS A SH+
Sbjct: 276 ITTSVGILV-IVFLVGHILHAAINRIQKVEEDYRRMEDLKVLAESADIAKSQFLATVSHE 334
Query: 381 IRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND----LLGLLNSILDTSKVEAGK 436
IR + G+ G++++ ++L+ R A++ L+ L+N +LD +K+E+G+
Sbjct: 335 IRTPMNGVLGMLQMLM-----DTDLDPTQRDYAGTAHESGKQLIKLINEVLDQAKIESGR 389
Query: 437 MQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV-KGDRVKLKQILS 495
M+L FD+ +L+D++ LF KG+E+ + S+ K V GD +L QI++
Sbjct: 390 MELEMVPFDLRTILDDILCLFSAEIKDKGIELAVFVSE----KVPDVLVGDPARLHQIIT 445
Query: 496 NLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF--LQSISCLFYKNKKARGD-L 552
NL+ N+VKFT +GHI V CV + + S GF ++S + + + D
Sbjct: 446 NLVGNSVKFTEQGHIFV--CVHMEDEL---TTVSKEEGFDSCNTLSGVKAADLRLSWDSF 500
Query: 553 EAVNAAQRDENAMEFT-----FEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLG 603
+++ D N E T F V+DTG GIP + VF ++Q GGTG+G
Sbjct: 501 KSLVGGLEDRNCGELTDVRIVFNVEDTGVGIPLLAQDRVFTPFMQADSSTSRNYGGTGIG 560
Query: 604 LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
L I + LV LM G ++ V + G FRF+V
Sbjct: 561 LSISKCLVELMQGSMDFVSQPG--IGATFRFSVVF 593
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 18/162 (11%)
Query: 971 GEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACEN 1030
G GS R EI + S+ L GK+ILV DD+ + RRVA L GA VE E+
Sbjct: 746 GFGSKRLNGREI----SQGSRLHSLLSGKQILVVDDNKVNRRVAAGALTKYGARVECVES 801
Query: 1031 GEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRN-QVHIP 1089
G+AA+ ++ +D MD +MP M+G+EATRKIRE E + + +P
Sbjct: 802 GKAAIARLQPSHE------------FDACFMDVQMPEMDGFEATRKIREAEGHDCKCRLP 849
Query: 1090 IIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYL 1130
I+A+TA + D+ + GMD ++ KP + L +A+ KY
Sbjct: 850 ILAMTADLIQATRDECTKCGMDGYVSKPFEEEQLYKAVAKYF 891
>gi|218781753|ref|YP_002433071.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
gi|218763137|gb|ACL05603.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
Length = 949
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 55/280 (19%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLG 421
QA+ +M KS AN SH+IR + G+ G+I L +E E + + A+ LL
Sbjct: 291 QADLANMAKSEFLANMSHEIRTPMNGVVGMISL-LLETELTREQKEYAETVRNSAHSLLE 349
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSDGSVLK 479
++N ILD SK+EAGK+ L DFD+ LE+ D+ A KG+E V +DP +
Sbjct: 350 IINDILDFSKIEAGKLDLEAIDFDLRNTLEEASDIVALRAQEKGLEFVCIIDPD----VP 405
Query: 480 FSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSIS 539
F ++KGD V+L+QI+ NL +NAVKFT++G I++R + K + P L
Sbjct: 406 F-RLKGDPVRLRQIVLNLANNAVKFTAQGSITIRVELLKQA----PDL------------ 448
Query: 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE-- 597
+ F V DTG G+ +++++F+ + Q +
Sbjct: 449 -------------------------LALKFSVTDTGIGVAPSRQQSLFDAFTQAEASTTR 483
Query: 598 --GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
GGTGLGL I + L ++M G I + +E +G+ F F
Sbjct: 484 NYGGTGLGLAISKKLAQMMKGRIGLESEEG--KGSTFWFT 521
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 19/134 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D+ + ++VA L+ LG EA NG A++ L +++ Y +
Sbjct: 695 ILVAEDNPVNQKVALSILKKLGLRAEAVANGREAVK----ALCEKK---------YTMVF 741
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQV---HIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
MDC+MP M+GYEATR+IR +R+ V P+IA+TAH + K IEAGMD +L KP
Sbjct: 742 MDCQMPDMDGYEATRRIRS--RRSCVLDPKTPVIAMTAHAMEGDRKKCIEAGMDDYLSKP 799
Query: 1118 LNRDHLMEAI-KYL 1130
+ L+E I K+L
Sbjct: 800 VEPGALIEMIHKWL 813
>gi|254411816|ref|ZP_05025592.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196181538|gb|EDX76526.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1478
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 138/271 (50%), Gaps = 49/271 (18%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
K+ AN SH+IR + G+ G+ EL +L+ ++ + V LLG++N ILD
Sbjct: 529 KAQFLANMSHEIRTPMNGVLGMSELLLTTDLNPRQLDF-VKTLQVSGEHLLGVINDILDF 587
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVK 489
SK+EAG+M+L ++ ++ LEDV+DL P A K +E+ L D V + ++ GD +
Sbjct: 588 SKLEAGEMRLDVDELNINRSLEDVLDLCSPQAEAKDLELAL-LVDTDVPR--RLMGDVGR 644
Query: 490 LKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKAR 549
L+QI +NL+SN++KFT G + +R V +
Sbjct: 645 LRQICTNLVSNSIKFTESGEVVIRVSVHQ------------------------------- 673
Query: 550 GDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLG 605
+LE +++ ++ F V DTG GI E + +F+ + QV GGTGLGL
Sbjct: 674 -ELE-------EQDKLQLRFAVRDTGIGINPEDKSKLFQAFSQVDSSTTRKYGGTGLGLA 725
Query: 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
I + LV +MGG+I V+ + G G+ F F +
Sbjct: 726 ICKQLVEMMGGEIG-VESQLG-VGSTFWFTI 754
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 14/125 (11%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
+P + +L+ +D+ + ++ + +R LG ++ ENGE AL+ + ND
Sbjct: 1219 EPKQSLTLLLVEDTPINLKLVQHQVRLLGHQWDSAENGEKALE--KLAEND--------- 1267
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
YD +LMDC+MP+M+GY+AT+ +R+ E N H +I +TA+ + DK I AGMD +
Sbjct: 1268 --YDIVLMDCQMPVMDGYKATQTLRQREGTNH-HTIVIGMTAYAMPGDRDKCIAAGMDDY 1324
Query: 1114 LGKPL 1118
L KP+
Sbjct: 1325 LSKPV 1329
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 14/119 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
KIL+ +D+ + ++ ++ LG E+ ENG+ AL + ND YD +
Sbjct: 936 KILLVEDTPINLKLVRHQVQLLGHESESAENGQEALDKIAK--ND-----------YDIV 982
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
LMDC+MP+M+GY+A R +RE E ++ H +I +TA+ + +K + AGMD +L KP+
Sbjct: 983 LMDCQMPVMDGYQAVRTLREREGTDR-HTIVIGMTAYAMQGDREKCLAAGMDDYLSKPV 1040
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 983 EEEDGERSQAQKP-----LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
EE + +R + P L+GK++L+ DD + R++ + L G V+ +NG AL
Sbjct: 764 EENESDRIFSNLPISPESLQGKRVLIVDDRPINRQIVKYQLEARGMEVDEADNGIIALNA 823
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
+++ + PYD L+D +MP ++G R I E + ++ +T+
Sbjct: 824 MQASAEAGK--------PYDVALLDMKMPKIDGSTLGRLILAEP--DWAKTKLVLMTSMH 873
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+G+ A +++G +L KP+ L+E+++ +
Sbjct: 874 AGDSAQPLLKSGFADYLVKPVKESQLLESLQKI 906
>gi|392535094|ref|ZP_10282231.1| sensor protein [Pseudoalteromonas arctica A 37-1-2]
Length = 895
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 151/323 (46%), Gaps = 69/323 (21%)
Query: 318 LILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANA 377
LI ++ G I + V K RKE Q+A+ S K AN
Sbjct: 489 LITFLISVTGTNIQIREQVAKQTHTLRKE-------------KQKADEASHIKGQFLANM 535
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKM 437
SH++R + GI GL L ++ + + + Q + LL +LN +LD SK+EAGK+
Sbjct: 536 SHEVRTPINGIKGLHYLA-LQQNDWQQARSYIEQADGALGVLLRVLNDVLDFSKMEAGKL 594
Query: 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNL 497
L++E +V L +++++L A K +++ LD S L + D ++LKQ+L NL
Sbjct: 595 DLMQEPINVASLADEMLNLLQFEADIKSIKLSLDFDKTSNL---VINTDPIRLKQVLLNL 651
Query: 498 LSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNA 557
L+NAVKFT EG I+++ +++KK
Sbjct: 652 LNNAVKFTGEGEITLK----------------------------IWQSKK---------- 673
Query: 558 AQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRL 613
M + F ++DTG GI E +K +F+ + Q GGTGLGL I + LV L
Sbjct: 674 -------MTY-FSINDTGIGISSEAQKQLFKPFAQADSSTSRQYGGTGLGLSICRKLVEL 725
Query: 614 MGGDIEIVDKENGERGTCFRFNV 636
MGG I++V E +G+ F F++
Sbjct: 726 MGGAIDLVSYEG--KGSTFTFSL 746
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 978 KQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQL 1037
K +I+++ E + K+L+ +D+ + + VA L+ G +G A++
Sbjct: 754 KAEQIQQQYDEIDVSTLSFANYKLLLVEDNPLNQHVASAILKTKGCIAYIANDGFEAIEK 813
Query: 1038 VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHI 1097
+ YD +LMD +MP M+G +AT+ IR + + +PII L+A+
Sbjct: 814 LTEN-------------SYDIVLMDIQMPKMDGLQATKVIRCD--LGLIDLPIIGLSANA 858
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ K + +GM+ ++ KP++ + L + +
Sbjct: 859 HDDDVKKALASGMNSYITKPIDANTLFKTL 888
>gi|18379305|ref|NP_565277.1| histidine kinase 4 [Arabidopsis thaliana]
gi|42570645|ref|NP_973396.1| histidine kinase 4 [Arabidopsis thaliana]
gi|11595487|emb|CAC18521.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|11595489|emb|CAC18522.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|11595491|emb|CAC18523.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|20198055|gb|AAD21777.2| putative histidine kinase [Arabidopsis thaliana]
gi|82569501|gb|ABB83393.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-SSRE-GFP]
gi|82569506|gb|ABB83397.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP]
gi|330250412|gb|AEC05506.1| histidine kinase 4 [Arabidopsis thaliana]
gi|330250413|gb|AEC05507.1| histidine kinase 4 [Arabidopsis thaliana]
Length = 1057
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 167/361 (46%), Gaps = 43/361 (11%)
Query: 309 LVHRTSKRALILLIVMTVGVLISMLTFV--FKSARAARKEMHLCASLIKQMEATQQAERK 366
++ R ++A I L V+T L + F+ + AA + + + E +AE
Sbjct: 387 MICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAA 446
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGL 422
+ KS A SH+IR + GI G++ + +EL + R VC L+ L
Sbjct: 447 DVAKSQFLATVSHEIRTPMNGILGMLAMLL-----DTELSSTQRDYAQTAQVCGKALIAL 501
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N +LD +K+EAGK++L FD+ +L+DV+ LF + K +E+ + SD
Sbjct: 502 INEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVP---EI 558
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS------------AIGNPSLSSS 530
VKGD + +QI+ NL+ N+VKFT +GHI V+ + + S + + S
Sbjct: 559 VKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVS 618
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAM-EFTF--------EVDDTGKGIPKE 581
+ ++S Y+ R ++ +E ++ EF ++DTG GIP
Sbjct: 619 KQSSYNTLSG--YEAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLV 676
Query: 582 KRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
+ VF ++Q GGTG+GL I + LV LM G I + + + G+ F F
Sbjct: 677 AQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPH--IGSTFWFTAV 734
Query: 638 L 638
L
Sbjct: 735 L 735
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 24/179 (13%)
Query: 961 SVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKP------LRGKKILVADDSMMLRRVA 1014
+V++K +S G+ + E+ + + + P L GKKILV DD+++ RRVA
Sbjct: 878 TVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVNRRVA 937
Query: 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074
L+ GA V E+G+ AL L L PH +D MD +MP M+G+EAT
Sbjct: 938 AGALKKFGAEVVCAESGQVALGL----------LQIPHT--FDACFMDIQMPQMDGFEAT 985
Query: 1075 RKIREEEKRN------QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
R+IR EK + H+PI+A+TA + ++ +++GMD ++ KP ++L +++
Sbjct: 986 RQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSV 1044
>gi|452853494|ref|YP_007495178.1| putative Sensor histidine kinase/response regulator [Desulfovibrio
piezophilus]
gi|451897148|emb|CCH50027.1| putative Sensor histidine kinase/response regulator [Desulfovibrio
piezophilus]
Length = 764
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 151/301 (50%), Gaps = 50/301 (16%)
Query: 349 LCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN 408
+C S +AE+ + KS+ AN SHD+R L GI GL EL ++ S+ ++
Sbjct: 231 ICGSTYLVQTKRAEAEQANRTKSVFLANMSHDMRTPLNGIMGLTEL--MQKKGLSQTQSR 288
Query: 409 LRQM-NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV- 466
M A LL ++ I D S++E+G+++L + F++ +LL+D + +F + KG+
Sbjct: 289 YADMVRHSAWTLLEIITDITDFSRLESGRLELTKTVFEMKQLLDDALAIFRFESENKGLV 348
Query: 467 -EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP 525
+ P +LK GD +LKQ+++NL+ NAVKFT G ++VR
Sbjct: 349 LSATVSPDVHRLLK-----GDAFRLKQVITNLVGNAVKFTEHGIVAVR------------ 391
Query: 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
+SS G++ VN R N + EV D+G GIP+E+++
Sbjct: 392 -VSSG-------------------GEVSEVNGG-RSRN-VRVLVEVSDSGIGIPQERQQD 429
Query: 586 VFENYVQVKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR 641
+FE++ QV + G+GLGL I + LV +MGG I V GE G F F+V L +
Sbjct: 430 IFESFRQVDDSYAKHHEGSGLGLAICRQLVTMMGGSIS-VRSVLGE-GATFSFDVILEVP 487
Query: 642 E 642
E
Sbjct: 488 E 488
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+R +++L+A+D+ + + A L G V NG L+L+R+
Sbjct: 507 VRPRRVLMAEDNSLNQTFAVEILEEAGHPVSVAANGYEVLELLRNN-------------E 553
Query: 1056 YDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
+D + MD +MP M+G EATR IR E + +PI+A TA + ++AGM+ +
Sbjct: 554 FDIVFMDIQMPEMDGLEATRCIRAGEAGEHAKRVPIVAATAFALPGDRQACLDAGMNGFV 613
Query: 1115 GKPLNRDHLMEA-IKY 1129
KPL + L++A +KY
Sbjct: 614 LKPLTSEDLLQAVVKY 629
>gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
Length = 1095
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 139/299 (46%), Gaps = 59/299 (19%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE S +KS AN SH+IR L G+ G+++L + L+ R A
Sbjct: 708 LKAKELAEAASRSKSEFLANMSHEIRTPLNGVLGMLQLAQT-----TRLDAEQRDFVDTA 762
Query: 417 ----NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDP 472
LL ++N ILD SK+EAGK+++I E F + L+DV+ F A KG+ + +D
Sbjct: 763 LASGRSLLAIINDILDFSKIEAGKLEVITEPFSLTPFLDDVLTTFRGEARDKGLTLAVDI 822
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
G+ + G + +++QIL NL+ NA+KFT +G +++ C P +P +R
Sbjct: 823 WPGTP---EHLTGGKSRVRQILFNLVGNAIKFTDQGSVTISVCPLGP----DPRDGRTR- 874
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
F V DTG GIP +FE + Q
Sbjct: 875 ----------------------------------LLFSVSDTGIGIPDAMVDLIFEPFTQ 900
Query: 593 VK----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASAND 647
V G GLGLGIV+ L+ L+GG + +D + G RGT +V L A+ D
Sbjct: 901 VDGSYMRRHQGAGLGLGIVKRLIGLLGGSM-CIDSKTG-RGTT--LHVVLGFDSATQAD 955
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 980 TEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVR 1039
T+ + DG +G ++LV +D+ + R + L +G VE NGE AL+ +
Sbjct: 952 TQADAADGSDRITGPARQGLRLLVVEDNRVNRLMVARMLTMMGHAVETANNGEEALKTLE 1011
Query: 1040 SGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH--IPIIALTAHI 1097
+ P+D + MD +MP MNG +ATR+IRE ++ + + IP+IA+TAH
Sbjct: 1012 TQ-------------PFDAVFMDIQMPGMNGVQATRRIREADQGSGIDPAIPVIAITAHA 1058
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHL 1123
+ + +E GMD ++ KP+ L
Sbjct: 1059 MAGDREIFLEGGMDDYIAKPVELTEL 1084
>gi|449518427|ref|XP_004166243.1| PREDICTED: histidine kinase 4-like, partial [Cucumis sativus]
Length = 756
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 149/326 (45%), Gaps = 46/326 (14%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----N 413
E +AE + KS A SH+IR + GI G++ L +EL + R
Sbjct: 121 ELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLL-----DTELSSTQRDYAQTAQ 175
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
C L+ L+N +LD +K+EAGK++L FD+ +L+DV+ LF + KGVE+ + S
Sbjct: 176 ACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVS 235
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI----------- 522
D V GD + +Q+++NL+ N+VKFT GHI V+ + + S +
Sbjct: 236 DKVP---EIVMGDPGRFRQVITNLVGNSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHVN 292
Query: 523 GNPS--LSSSRHGFLQSISCLFYKNKKARGDL--------------EAVNAAQRDENAME 566
GN S ++H F +++S + + D + A + +
Sbjct: 293 GNSEDGASHNKHQF-ETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNEISDIVT 351
Query: 567 FTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVD 622
V+DTG GIP + VF ++Q GGTG+GL I + LV LMGG I V
Sbjct: 352 VMISVEDTGIGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVS 411
Query: 623 KENGERGTCFRFNVFLAIREASANDN 648
K + G+ F F E A N
Sbjct: 412 KP--QVGSTFSFTAVFGRCEKKATVN 435
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 29/149 (19%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L GKKILV DD+ + RRVA L+ GA VE E+G+AAL L L PH
Sbjct: 608 LCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALAL----------LQLPH--S 655
Query: 1056 YDYILMDCEMPIMNGYEATRKIR-----------------EEEKRNQVHIPIIALTAHIS 1098
+D MD +MP M+G+EATR+IR E ++++ H+PI+A+TA +
Sbjct: 656 FDACFMDIQMPEMDGFEATRRIRMMESKENEVLIRESNGKENARKDEWHVPILAMTADVI 715
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
D+ ++ GMD ++ KP ++L +A+
Sbjct: 716 HATYDECLKCGMDGYVSKPFEEENLYQAV 744
>gi|384490898|gb|EIE82094.1| hypothetical protein RO3G_06799 [Rhizopus delemar RA 99-880]
Length = 1218
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 137/292 (46%), Gaps = 53/292 (18%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K EA A+R + +K+ +N SH+IR L GITG++ ++ +E + +
Sbjct: 651 KLKEAHDAAQRSTESKTRFLSNMSHEIRTPLIGITGMLNFL-LDTELTAEQTDYVHTIQQ 709
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV--VLDP 472
A LL ++N ILD SKVEAG M+L E F++ +ED +L +A++K +E+ +D
Sbjct: 710 SAESLLVVINDILDLSKVEAGMMKLEWEPFNLVTTIEDTNELMSTLAIQKNLELSFWIDN 769
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
+V + GDR++L+Q+L NL+ NA+KFTS G + + V+K
Sbjct: 770 DIPNV-----IVGDRIRLRQVLLNLIGNAIKFTSVGEVFTKCTVQK-------------- 810
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
+E+ + FEV DTG G E +F+ + Q
Sbjct: 811 -------------------------LDTEESNLTLLFEVVDTGTGFDAEDESIMFKPFSQ 845
Query: 593 VKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
V GG+GLGL I + L+ L GG + K +G+ F F V I
Sbjct: 846 VDSSSTRKHGGSGLGLVISRQLIELHGGKMSC--KSEKGKGSVFYFTVKFGI 895
>gi|257059172|ref|YP_003137060.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
gi|256589338|gb|ACV00225.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
Length = 1090
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 150/293 (51%), Gaps = 26/293 (8%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
+A + A+ + KS A+ SH++R L I G ++ + E + NL ++
Sbjct: 582 QAKEAADAANRAKSEFLASMSHELRTPLNAILGFTQVMRRDRTLNPEHQQNLSIISRSGE 641
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSV 477
LL L+N IL+ SK+EAG+ FD+ LL+++ + H A KG++++ + + V
Sbjct: 642 HLLELINDILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLIFERTP-EV 700
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
++ ++ D KL+Q+L NLL NA+KFT EG +++R + S + GF +S
Sbjct: 701 PQY--LETDEGKLRQVLINLLGNAIKFTEEGGVTLRV---------KSEVRSRKGGFRES 749
Query: 538 ISCLFYKNKKARGDLE--AVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+ DLE A+ D + TFEV+D+G GI E+ +F + Q +
Sbjct: 750 ATLRTI-------DLEKPALTPIIADSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTET 802
Query: 596 G---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
G + GTGLGL I + V+LMGG+I + +G+ F F++ + ASA
Sbjct: 803 GRQAQEGTGLGLPISRKFVQLMGGNISVSSILG--QGSLFAFSIKAKLTNASA 853
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+IL DD + R + L +G V NG+ AL++ + PH+ I
Sbjct: 874 RILSVDDRLESRLLLVKLLSSMGFEVRQASNGKEALEIWETW--------EPHL-----I 920
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD MPI++GY+AT++I+ K +IALTA EE + + AG D + KP
Sbjct: 921 WMDMRMPIIDGYQATQRIKATTKGQ--GTVVIALTASAFEEERNMVLSAGCDDFMRKPFR 978
Query: 1120 RDHLMEAI 1127
+ L E I
Sbjct: 979 EEVLWEKI 986
>gi|20090861|ref|NP_616936.1| sensory transduction histidine kinase [Methanosarcina acetivorans
C2A]
gi|19915933|gb|AAM05416.1| sensory transduction histidine kinase [Methanosarcina acetivorans
C2A]
Length = 1000
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 147/300 (49%), Gaps = 42/300 (14%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE + K AN SH+IR + + G++E+ +E E L+ + A
Sbjct: 432 LKAKEAAESANKAKGDFLANMSHEIRTPMNAVLGMLEML-LETSLTDEQREYLQLAHASA 490
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL +++ +LD SK+E K++L + F++ L+ +++L A KG+++
Sbjct: 491 ESLLSIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLSGKAGSKGLKLAFHIEKDL 550
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
F GD V+LKQ+L N+L NA+KFT +G I++ V PS N LS+S F +
Sbjct: 551 PSTFI---GDPVRLKQVLFNILGNAIKFTKKGEIALSVEVYMPSE-RNSGLSNS--DFPE 604
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++ L F+V DTG GIP EK +F+ ++Q
Sbjct: 605 EVALL---------------------------FKVKDTGIGIPPEKLSQIFDPFIQADAS 637
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQG 652
V GGTGLGL I LV LM G I V+ E G +G F F V ++ +++N QG
Sbjct: 638 VTREYGGTGLGLAISSQLVELMEGRI-WVESEVG-KGCTFYFTV--RVKRGESSENYGQG 693
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIEAGMDVHL 1114
+D +LMD +MP M+G EATR+IR+ + H IPIIA TA E+ +K EAGM+ ++
Sbjct: 765 FDAVLMDIQMPGMDGLEATRRIRDPSSGVRRHNIPIIAFTARALKEDREKCFEAGMNYYI 824
Query: 1115 GKPLNRDHLM 1124
KPL ++ L+
Sbjct: 825 SKPLKKEKLL 834
>gi|429214854|ref|ZP_19206016.1| sensor histidine kinase/response regulator [Pseudomonas sp. M1]
gi|428154081|gb|EKX00632.1| sensor histidine kinase/response regulator [Pseudomonas sp. M1]
Length = 1069
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 143/310 (46%), Gaps = 58/310 (18%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC--- 415
A + AE+ S KS+ A SH+IR L I G++EL + E N + +++
Sbjct: 580 AKESAEKASRAKSVFLATMSHEIRTPLNAIIGMLELVLTRR---DDAELNAQSVHIAYES 636
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
A LL L+ ILD S++E+GK+ L+ E + +LLE V ++F +A +K + + LD
Sbjct: 637 AIGLLALIGDILDISRIESGKLALVPEPARMKDLLESVGNVFSALARQKQLRLSLDIDP- 695
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
L V D +K+KQILSNL+SNA+KFT G + VR V A
Sbjct: 696 --LAAELVWVDGLKVKQILSNLVSNAIKFTERGGVDVRCTVAPAGA-------------- 739
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV---- 591
A+ F EV D+G GIP + VF+ +
Sbjct: 740 ----------------------------ALRFVIEVVDSGAGIPAAQLDQVFKPFFVADG 771
Query: 592 QVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL-AIREASANDNNT 650
V + G GLGL I QSL LMGG ++ V E G GT F+V L + A T
Sbjct: 772 AVNDPNAGAGLGLAISQSLCLLMGGTLD-VRSEVGV-GTRMTFSVSLDRVIAEPAQPRAT 829
Query: 651 QGEKELAGGD 660
+GE+ G +
Sbjct: 830 EGEEAGQGAE 839
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 1057 DYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D ++ DC MP M+G+E TR IR EE + +I LTA EE ++ +GMD L
Sbjct: 887 DIVITDCNMPEMDGHEMTRAIRRLEEGQGMRPCLVIGLTADAQREELERCRASGMDHALA 946
Query: 1116 KPLN 1119
KP+N
Sbjct: 947 KPIN 950
>gi|418685436|ref|ZP_13246612.1| GHKL domain protein [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|410740044|gb|EKQ84766.1| GHKL domain protein [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
Length = 541
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 51/284 (17%)
Query: 357 MEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
++A + AE+ S KS AN SH+IR + G+ G+++L E + + ++V A
Sbjct: 143 IQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGT-TKLNDEQKEYVEVLSVSA 201
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
LL ++N ILD SK+EAGK+ L E F + +L+++ DL P+A +K ++ L+
Sbjct: 202 KSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLLFPLAKQKEIDFRLE-GKSE 260
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
+ ++ V GD ++L+QIL NL N +KFT+ G + ++ K S
Sbjct: 261 IQEY--VYGDPLRLRQILWNLAGNGIKFTNRGEVVLKVAQKNIS---------------- 302
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
+D ++EFT V D+G GIP EK+K VFE + Q
Sbjct: 303 -----------------------KDGVSIEFT--VMDSGIGIPLEKQKQVFEAFSQNDTS 337
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GG+GLGL I + L+ L GG +++ + + GE G+ F F +
Sbjct: 338 TARKFGGSGLGLSITKQLIELQGGVLKL-ESQEGE-GSKFTFTI 379
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 985 EDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLND 1044
+D E+S + +ILVA+D+ + E L+ LG NG ++ R L
Sbjct: 399 KDLEKSFQDVVSKSTRILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIE--RMQLE- 455
Query: 1045 QRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104
+D ILMD MP ++G EAT+ IR + + ++ I IIALTA +K
Sbjct: 456 ----------TFDIILMDIHMPEVDGIEATKWIRSKNQNSKFPI-IIALTADAIESSREK 504
Query: 1105 TIEAGMDVHLGKPLN 1119
I GM+ L KPL+
Sbjct: 505 YISKGMNDCLTKPLD 519
>gi|451853371|gb|EMD66665.1| hypothetical protein COCSADRAFT_84482 [Cochliobolus sativus ND90Pr]
Length = 2367
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 156/338 (46%), Gaps = 67/338 (19%)
Query: 329 LISMLTFVFKSARAAR-KEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAG 387
++ M ARAA K A+ I+ M+ ++A + KSL AN SH++R L G
Sbjct: 1846 MLEMQKRALAQARAAEIKAKEAEANAIRNMKLKEEAAKA---KSLFLANVSHELRTPLNG 1902
Query: 388 ITGLIELCYVEAGP-GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV 446
+ G+ EL ++A P E + VCA+ LL ++N +LD SK+EAGKM ++E +
Sbjct: 1903 VIGMSEL--LKASPLNGEQSGYADSIRVCADTLLSIINDLLDYSKLEAGKMNVMEMPISL 1960
Query: 447 GELLEDVVDLFHPVAMRKGVEVV----LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAV 502
E + +VV +G++ + LDP V GD V+L QIL NLLSN+
Sbjct: 1961 NETIAEVVRALAYTNAERGLKTIEQLELDPE-------MLVMGDPVRLHQILMNLLSNSY 2013
Query: 503 KFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562
KFT G ++VRA V Q
Sbjct: 2014 KFTPRGSVTVRAVVD-----------------------------------------QETS 2032
Query: 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVR-LMGGD 617
+ T V DTG GIP E+++ +F + Q++ GGTGLGL I ++L+ +M G
Sbjct: 2033 EWADVTCSVIDTGIGIPDEQKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGT 2092
Query: 618 IEIVDKENGERGTCFRFNV-FLAIREASANDNNTQGEK 654
+ + D + G +GT F++ F + +A D + +
Sbjct: 2093 VRL-DSQPG-KGTTVTFSLRFKKVPKARVADQQQRSRE 2128
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
P R ++ +A+D+++ +R+A ++ LG +A +G + + + R
Sbjct: 2157 PRRDLRVCIAEDNLINQRIAISFVQKLGFKCDAYLDGFKTIDALERASENGR-------- 2208
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
P+ +LMD +MP +GYEAT+ IR+ ++ IIA+TA + +K IE+GM+ +L
Sbjct: 2209 PFHLVLMDVQMPHCDGYEATKLIRKHPNPEIRNVLIIAMTASAIQGDREKCIESGMNNYL 2268
Query: 1115 GKPL 1118
KP+
Sbjct: 2269 AKPV 2272
>gi|444377159|ref|ZP_21176394.1| hypothetical protein D515_1068 [Enterovibrio sp. AK16]
gi|443678836|gb|ELT85501.1| hypothetical protein D515_1068 [Enterovibrio sp. AK16]
Length = 1102
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 123/447 (27%), Positives = 198/447 (44%), Gaps = 106/447 (23%)
Query: 221 ATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNP----VKNVSCTSGNGTLSI 276
A N+ ++L Q TR+ I N +S + + N TR ++ +S NG L I
Sbjct: 346 AQNNYRILAQ----TRL-IANGYVSEEFVRNVVTRVIDTQKGDRSLQLAGQSSNNGKLII 400
Query: 277 GKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSK--RALILLIVMTVGVLISMLT 334
+ + S V G+V L ++ L+ + + L +M+
Sbjct: 401 NSLSMPLFLSNQLV--------------GVVCLFDESTNYDEDLVSWLEPVLSSLSAMVN 446
Query: 335 FVFKSARAARKEMHLCASLIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIE 393
FV ++ L + +QM A ++AE+ + K+ A SH+IR + GI G+
Sbjct: 447 FV--------RQKKLNDLITEQMVHAKEEAEKANEAKTNFLAMMSHEIRTPMNGIVGMSN 498
Query: 394 LCYVEAGPGSELETNLRQMNV--------CANDLLGLLNSILDTSKVEAGKMQLIEEDFD 445
L ET+L Q +N LL ++N +LD +K+EAGKM+L++++ +
Sbjct: 499 LLK---------ETDLNQQQSYFVDTLVHSSNALLNIINDVLDLTKIEAGKMRLLDQECE 549
Query: 446 VGELLEDVVDLFHPVAMRKGVEV--VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVK 503
+ +L+ D + +FH A+ K + + +++P L D V+ QI+ NL+ NA+K
Sbjct: 550 LPDLVHDALVVFHAKAVEKSLRLHCLIEPDLPRWLML-----DPVRYTQIILNLVGNALK 604
Query: 504 FTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDEN 563
FT +HG S + + +K D+E +
Sbjct: 605 FT-------------------------KHG-----SVMVHVSKAMLDDVEHIR------- 627
Query: 564 AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG----GTGLGLGIVQSLVRLMGGDIE 619
EV DTG GIP+EK T+FEN+ QV GTGLGL + L LMGG IE
Sbjct: 628 -----LEVKDTGIGIPEEKLGTIFENFTQVDNSYSRSYQGTGLGLPVCLKLTELMGGAIE 682
Query: 620 IVDKENGERGTCFRFNVFLAIREASAN 646
+V KE+ GT F +V L + + N
Sbjct: 683 VVSKED--VGTTFTVDVPLTLVPENTN 707
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 74/127 (58%), Gaps = 17/127 (13%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G +L+A+D ++ + + + L LG +NG AL+ R+ P+D
Sbjct: 839 GLNVLIAEDHLVNQDLMVLVLNSLGCQSTLADNGLEALEKHRAN-------------PFD 885
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
ILMDC+MP M+G+EATR IR+ ++ ++PIIA+TA+ +A + +++GM+ HL KP
Sbjct: 886 LILMDCQMPEMDGFEATRNIRDFDE----NVPIIAVTANALSGDAQRCLDSGMNAHLAKP 941
Query: 1118 LNRDHLM 1124
++ L+
Sbjct: 942 FTKEQLV 948
>gi|451946365|ref|YP_007466960.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451905713|gb|AGF77307.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 932
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 144/302 (47%), Gaps = 51/302 (16%)
Query: 341 RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
+ ++ + L ++ + + +QA+ + KS AN SH+IR + GI G+ E+ ++
Sbjct: 246 QVQKRTVELKKAMDEAIVLAEQAQAANKAKSQFLANMSHEIRTPMNGILGMAEMA-LDTD 304
Query: 401 PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
EL +++ + LL ++N ILD SK+EAGK++L +F++ L+EDV +
Sbjct: 305 LDKELRSSIETIMSSGESLLTIINDILDFSKIEAGKLELETINFNLALLVEDVAQMLAYR 364
Query: 461 AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
A KG+E++++ D S V GD +L+Q+L NLL NA+KFT G I ++ + +
Sbjct: 365 AHAKGLELIVNVPDNIS---SYVSGDPSRLRQVLVNLLGNAIKFTDHGEILLQLTLLGET 421
Query: 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
+N F V DTG GI +
Sbjct: 422 -----------------------------------------DNEASLRFSVQDTGIGISE 440
Query: 581 EKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
++ +T+F + Q + GGTGLGL I + LV LMGG+I + G G+ F V
Sbjct: 441 DEYETLFHPFSQADDSTTRKYGGTGLGLAISRQLVELMGGEINCNSRPGG--GSEFWMEV 498
Query: 637 FL 638
L
Sbjct: 499 TL 500
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 15/131 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+LVA+D++ ++VA LR LG V +NG+ ALQ +D +L
Sbjct: 670 VLVAEDNVTNQQVAMGVLRKLGCKVTLTKNGQEALQFFEKN-------------SFDIVL 716
Query: 1061 MDCEMPIMNGYEATRKIR--EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
MDC+MP M+GYEAT IR E K P++ALTA+ + +K + AGMD ++ KP
Sbjct: 717 MDCQMPRMDGYEATSAIRRLENMKDRGKRTPVVALTANALTGDREKCLAAGMDDYISKPF 776
Query: 1119 NRDHLMEAIKY 1129
+ + + +K+
Sbjct: 777 SLQQVEKVLKH 787
>gi|408417737|ref|YP_006759151.1| sensory box histidine kinase/response regulator protein
[Desulfobacula toluolica Tol2]
gi|405104950|emb|CCK78447.1| sensory box histidine kinase/response regulator protein
[Desulfobacula toluolica Tol2]
Length = 971
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 153/316 (48%), Gaps = 63/316 (19%)
Query: 343 ARKEMHLCASLIKQME-ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
A+K++ +++K +E A +QAE S KS AN SH+IR + G+ G+ EL
Sbjct: 279 AKKDLE---AMVKNLEKAKEQAEEVSRIKSQFLANMSHEIRTPMNGVLGMTELLLTTRLS 335
Query: 402 GSELETNLRQMNVCAND---LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFH 458
E R N LL ++N ILD SK+EAGK++L DF++ +L+EDV L
Sbjct: 336 ----ENQHRYAETIQNSGESLLEIINDILDFSKIEAGKLELEMIDFNLEQLIEDVSQLLA 391
Query: 459 PVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK 518
A K +E+V+ G+ + +KGD +L+Q+L+NL+ NA+KFT +G I ++A
Sbjct: 392 SQAHSKRLELVVAIKRGTRI---YLKGDPTRLRQVLTNLIGNAIKFTEKGEIVIKA---- 444
Query: 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578
S++R +D N + + DTG GI
Sbjct: 445 ---------STTR----------------------------KDNNRVNLHLSIKDTGVGI 467
Query: 579 PKEKRKTVFENYVQVK----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
+ R +F+ + Q+ GGTGLGL I + LV LMGG ++ D G RG+ F F
Sbjct: 468 NPQDRIRLFKAFSQLDGSTTRKYGGTGLGLTISRELVSLMGGVLK-CDSSPG-RGSDFFF 525
Query: 635 NVFLAIREASANDNNT 650
L +R+ N T
Sbjct: 526 T--LPMRKNRENPQKT 539
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILVA+D++ + V LR G V NG A+++ L D +L
Sbjct: 700 ILVAEDNLTNQEVTMGMLRKFGCRVSLAVNGSQAVEIFLKELPD-------------LVL 746
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MDC+MP M+GY+A +IR+ EK + PI+ALTAH + +K + AGMD +L KP
Sbjct: 747 MDCQMPEMDGYQAAGEIRKHEKALNIRTPIVALTAHALEGDKEKCLAAGMDDYLSKPFKS 806
Query: 1121 DHL 1123
+ L
Sbjct: 807 EML 809
Score = 48.1 bits (113), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 963 LLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKP-------LRGKKILVADDSMMLRRVAE 1015
+LK +S G GS + + + R QK L+G K+L+ DD+ + E
Sbjct: 510 VLKCDSSPGRGSDFFFTLPMRKN---RENPQKTGLINNDTLKGLKVLIIDDNPTNLEILE 566
Query: 1016 INLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075
+ ++ G L+ ++ + +P+D +L+D MP M+G+E R
Sbjct: 567 GQIACFCMKFDSSLRGAEGLKKLQ--------IAQQENVPFDLVLLDMNMPDMDGFEVIR 618
Query: 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+I+ + I I+ + ISGE+ K + +G++ +L KP+ + L ++
Sbjct: 619 RIKAAPDLKKPSI-IMLTSVWISGED-QKAMHSGINAYLTKPVRQSDLQNSL 668
>gi|254560907|ref|YP_003068002.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4]
gi|254268185|emb|CAX24095.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4]
Length = 1125
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 135/286 (47%), Gaps = 55/286 (19%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLG 421
+AER S KS A SH+IR L GI G +L E + L + V LL
Sbjct: 582 EAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRRLELIRVSGESLLT 641
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG--VEVVLDPSDGSVLK 479
++N +LD SK+EAG+++L F +G+L+ED V + A++ VE +DP L
Sbjct: 642 VVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPD----LP 697
Query: 480 FSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK--PSAIGNPSLSSSRHGFLQS 537
S V GD +L+Q+L NLL+NAVKFT G + + A + P A G
Sbjct: 698 VS-VVGDANRLRQVLFNLLNNAVKFTPAGSVVLTARYEGSVPGADG-------------- 742
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE 597
G EA+ FE+ DTG GI +R +F+ + QV +G
Sbjct: 743 ------------GTAEALR------------FEISDTGIGIAPSQRHRLFKPFSQV-DGS 777
Query: 598 -----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
GG+GLGL I LV +MGG I + +E G+ F F + L
Sbjct: 778 ISRRFGGSGLGLAICHRLVTMMGGAIGVESREGA--GSTFWFTLAL 821
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 989 RSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDL 1048
R +A +P R +L+ +D + + +A L G V+ +G AA+ V + + +
Sbjct: 838 RPEAARPAR---LLLVEDVPINQTLARAVLEVQGYRVDVAGDGNAAIAAVEATYGPE-EA 893
Query: 1049 GAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA 1108
G PY +LMD +MP M+G ATR+IR +PI+A+TA++ + + I A
Sbjct: 894 GTD---PYAVVLMDVQMPGMDGLTATRRIRAMAG-PAARLPIVAMTANVLDGQVQEFIAA 949
Query: 1109 GMDVHLGKPLNRDHLMEAIKY 1129
GMD H+GKP R L I++
Sbjct: 950 GMDDHVGKPFKRAQLCAVIEH 970
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,057,774,623
Number of Sequences: 23463169
Number of extensions: 736184444
Number of successful extensions: 2502682
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 21307
Number of HSP's successfully gapped in prelim test: 88317
Number of HSP's that attempted gapping in prelim test: 2225128
Number of HSP's gapped (non-prelim): 217546
length of query: 1131
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 977
effective length of database: 8,745,867,341
effective search space: 8544712392157
effective search space used: 8544712392157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 83 (36.6 bits)