BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042553
(1131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With Mg2+
Length = 206
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 90/127 (70%), Gaps = 2/127 (1%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
LRGK++LV DD+ + R+VA L+ +G + VE C++G+ AL+LV GL + + G+ L
Sbjct: 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKL 118
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG-EEADKTIEAGMDVH 1113
P+DYI MDC+MP M+GYEATR+IR+ EK V PIIA++ H G EEA +TI+AGMD
Sbjct: 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAF 178
Query: 1114 LGKPLNR 1120
L K LN+
Sbjct: 179 LDKSLNQ 185
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A Novel
Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A Novel
Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A Novel
Cis- Autophosphorylation Mechanism
Length = 122
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 15/132 (11%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
KK+L+ DDS +LR++ NL+ G V ENG+ AL+ + D
Sbjct: 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE-------------FTPDL 49
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
I++D MP+M+G+ +K++E+E+ + IP+I LTA E+ + G + KP
Sbjct: 50 IVLDIMMPVMDGFTVLKKLQEKEEWKR--IPVIVLTAKGGEEDESLALSLGARKVMRKPF 107
Query: 1119 NRDHLMEAIKYL 1130
+ +E +K+L
Sbjct: 108 SPSQFIEEVKHL 119
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
KK+L+ DDS +LR++ NL+ G V ENG+ AL+ + D
Sbjct: 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE-------------FTPDL 49
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
I++ MP+M+G+ +K++E+E+ + IP+I LTA E+ + G + KP
Sbjct: 50 IVLXIMMPVMDGFTVLKKLQEKEEWKR--IPVIVLTAKGGEEDESLALSLGARKVMRKPF 107
Query: 1119 NRDHLMEAIKYL 1130
+ +E +K+L
Sbjct: 108 SPSQFIEEVKHL 119
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 42/170 (24%)
Query: 987 GERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
G + KP KIL+ +D+ + VA+ ++ LG T++ NG A+ + S
Sbjct: 1 GSHMETSKP----KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINSS----- 51
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK------------------------ 1082
YD +LMD MP+++G +ATR IR E+
Sbjct: 52 --------SYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCM 103
Query: 1083 RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYLH 1131
R +PIIA+TA+ E +++ GMD + KP+ L E + +YLH
Sbjct: 104 RPTNRLPIIAMTANTLAESSEECYANGMDSFISKPVTLQKLRECLQQYLH 153
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 17/127 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILV DD + RR+ L LG + +G AL + L HI D +L
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV----------LSKNHI---DIVL 57
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D MP M+GY T++IR+ + +P+I +TA+ EE + +E+GMD L KP+
Sbjct: 58 SDVNMPNMDGYRLTQRIRQL----GLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 113
Query: 1121 DHLMEAI 1127
D + + +
Sbjct: 114 DVIKQTL 120
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 17/127 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILV DD + RR+ L LG + +G AL + L HI D +L
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV----------LSKNHI---DIVL 178
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D MP M+GY T++IR+ + +P+I +TA+ EE + +E+GMD L KP+
Sbjct: 179 SDVNMPNMDGYRLTQRIRQL----GLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 234
Query: 1121 DHLMEAI 1127
D + + +
Sbjct: 235 DVIKQTL 241
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 22/132 (16%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
KKILV DD + + E NLR G V +G A+++V L D
Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-------------LQPDL 49
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI--EAGMDVHLGK 1116
IL+D +P +G E R++R+ + +PII LTA S E DK I E G D ++ K
Sbjct: 50 ILLDIMLPNKDGVEVCREVRK-----KYDMPIIMLTAKDS--EIDKVIGLEIGADDYVTK 102
Query: 1117 PLNRDHLMEAIK 1128
P + L+ +K
Sbjct: 103 PFSTRELLARVK 114
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 22/132 (16%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
KKILV DD + + E NLR G V +G A+++V L D
Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE-------------LQPDL 49
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI--EAGMDVHLGK 1116
IL+D +P +G E R++R+ + +PII LTA S E DK I E G D ++ K
Sbjct: 50 ILLDIMLPNKDGVEVCREVRK-----KYDMPIIMLTAKDS--EIDKVIGLEIGADDYVTK 102
Query: 1117 PLNRDHLMEAIK 1128
P + L+ +K
Sbjct: 103 PFSTRELLARVK 114
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+ KIL+ DD +RR+ + LR LG + ++G AL +++ G
Sbjct: 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG-------------D 57
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D+++ D MP M G + + IR +E+ H+P++ +TA E+ + +AG++ ++
Sbjct: 58 FDFVVTDWNMPGMQGIDLLKNIRADEELK--HLPVLMITAEAKREQIIEAAQAGVNGYIV 115
Query: 1116 KPLNRDHLMEAI 1127
KP L E +
Sbjct: 116 KPFTAATLKEKL 127
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk. Structure
At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
KK+L+ +D+ E+N++ +EA G LQ R GL+ L D
Sbjct: 2 KKVLIVEDN-------ELNMKLFHDLLEA--QGYETLQ-TREGLSA---LSIARENKPDL 48
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
ILMD ++P ++G E T+ ++E++ + HIP++A+TA + ++ E G + ++ KP+
Sbjct: 49 ILMDIQLPEISGLEVTKWLKEDD--DLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPI 106
Query: 1119 NRDHLMEAIKYL 1130
+ H +E IK L
Sbjct: 107 SVVHFLETIKRL 118
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver Domain
Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+A+D+ + R VA L + NG ALQ + N Q +D I+
Sbjct: 13 VLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ---NRQ----------FDVII 59
Query: 1061 MDCEMPIMNGYEATRKIREEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
MD +MP+M+G EA +IR E+ N IIA+TA D A +D ++ KPLN
Sbjct: 60 MDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTID---DDRPGAELDEYVSKPLN 116
Query: 1120 RDHLMEAIKYLH 1131
+ L + + H
Sbjct: 117 PNQLRDVVLTCH 128
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 69/289 (23%), Positives = 116/289 (40%), Gaps = 55/289 (19%)
Query: 344 RKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGS 403
R L ++L + A +AER K N S+++R L I G EL G
Sbjct: 17 RGSHMLQSALADRSAALAEAERL---KRDFVGNVSYELRTPLTTIIGYSELLERADGISE 73
Query: 404 ELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
++ + A L ++ +LD ++++AG+M L ED V +LL + + A
Sbjct: 74 RGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQL 133
Query: 464 KGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG 523
GV + ++ + L ++GD +L Q L +L+ NA++ T G G
Sbjct: 134 GGVTLAVECEEDVGL----IRGDGKRLAQTLDHLVENALRQTPPG--------------G 175
Query: 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKR 583
+LS+ R A G E +V DTG+G+P +
Sbjct: 176 RVTLSARR----------------ALG---------------EVRLDVSDTGRGVPFHVQ 204
Query: 584 KTVFENYVQVKXXXXXXXXXXXIVQSLVRLMGGDIEIVDKE-NGERGTC 631
+F+ + V +V++LV L GG + + + NG TC
Sbjct: 205 AHIFDRF--VGRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTC 251
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 996 LRGKKILVA----DDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
LR K++LV DD ++RRV ++ + + +E +NG AL V+
Sbjct: 3 LRSKRVLVVEDNPDDIALIRRV--LDRKDIHCQLEFVDNGAKALYQVQQA---------- 50
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
YD I++D +PI NG+E +R+ NQ H PI+ LT ++S + A + AG
Sbjct: 51 ---KYDLIILDIGLPIANGFEVXSAVRKPGA-NQ-HTPIVILTDNVSDDRAKQCXAAGAS 105
Query: 1112 VHLGKPLN 1119
+ K N
Sbjct: 106 SVVDKSSN 113
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With Mg(2+)-
Bef (Wild Type)
Length = 116
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 19/132 (14%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K+ILV DD +R + + L+ G ++ ENGE AL+ SG YD
Sbjct: 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG-------------NYDL 48
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+++D EMP ++G E +IR+++K + II LTA+ S +D + A D ++ K
Sbjct: 49 VILDIEMPGISGLEVAGEIRKKKKDAK----IILLTAY-SHYRSDLSSWAA-DEYVVKSF 102
Query: 1119 NRDHLMEAIKYL 1130
N D L E +K L
Sbjct: 103 NFDELKEKVKKL 114
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter Pylori
Length = 129
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 15/137 (10%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
PL K+LV DDS +RR+ + L LG V E+G A + + + + +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTK-------- 53
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
++ D MP MNG + +K+R + + + IPII +TA E ++AG++ +
Sbjct: 54 ----VLITDWNMPEMNGLDLVKKVRSDSRFKE--IPIIMITAEGGKAEVITALKAGVNNY 107
Query: 1114 LGKPLNRDHLMEAIKYL 1130
+ KP L E ++ +
Sbjct: 108 IVKPFTPQVLKEKLEVV 124
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TAH E +AG ++ KP
Sbjct: 53 VISDWRMPNMDGLELLKTIRADGAMSA--LPVLMVTAHAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of Heli
Pylori
Length = 129
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
PL K+LV DDS +RR+ + L LG V E+G A + + + + +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTK-------- 53
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
++ D MP MNG + +K+R + + + IPII +T E ++AG++ +
Sbjct: 54 ----VLITDWNMPEMNGLDLVKKVRSDSRFKE--IPIIMITTEGGKAEVITALKAGVNNY 107
Query: 1114 LGKPLNRDHLMEAIKYL 1130
+ KP L E ++ +
Sbjct: 108 IVKPFTPQVLKEKLEVV 124
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV +D L + L+ TV+ C +GE + + LN+ P+D +
Sbjct: 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYM---ALNE----------PFDVV 50
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
++D +P+ +G+E + +RE + V+ P++ LTA E K + G D +L KP +
Sbjct: 51 ILDIMLPVHDGWEILKSMRE----SGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFD 106
Query: 1120 RDHLMEAIKYL 1130
L+ ++ L
Sbjct: 107 LRELIARVRAL 117
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With Mg(2+)-
Bef (Semet, L89m)
Length = 116
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K+ILV DD +R + + L+ G ++ ENGE AL+ SG YD
Sbjct: 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG-------------NYDL 48
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+++D E P ++G E +IR+++K + II LTA+ S +D + A D ++ K
Sbjct: 49 VILDIEXPGISGLEVAGEIRKKKKDAK----IILLTAY-SHYRSDXSSWAA-DEYVVKSF 102
Query: 1119 NRDHLMEAIKYL 1130
N D L E +K L
Sbjct: 103 NFDELKEKVKKL 114
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59 And
89: N59d E89y
Length = 132
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 56
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D +MP M+G E + IR + + +P++ +TA+ E +AG ++ KP
Sbjct: 57 VISDWDMPNMDGLELLKTIRADGAMSA--LPVLMVTAYAKKENIIAAAQAGASGYVVKPF 114
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 115 TAATLEEKL 123
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D +MP M+G E + IR + + +P++ +TA+ E +AG ++ KP
Sbjct: 53 VISDWKMPNMDGLELLKTIRADGAMSA--LPVLMVTAYAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89q
Length = 132
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 56
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D +MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 57 VISDWDMPNMDGLELLKTIRADGAMSA--LPVLMVTAQAKKENIIAAAQAGASGYVVKPF 114
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 115 TAATLEEKL 123
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 1000 KILVADDSMMLRRVAE--INLRHLGATVEACENGEA---ALQLVRSGLNDQRDLGAPHIL 1054
KILV +D+ + + V + +NL + AC+ EA +L G N
Sbjct: 4 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGEN----------- 52
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
Y+ I MD +MP ++G +T+ IR + PI+ALTA + +E+GM+ L
Sbjct: 53 -YNMIFMDVQMPKVDGLLSTKMIRRDLGYTS---PIVALTAFADDSNIKECLESGMNGFL 108
Query: 1115 GKPLNRDHL 1123
KP+ R L
Sbjct: 109 SKPIKRPKL 117
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 1000 KILVADDSMMLRRVAE--INLRHLGATVEACENGEA---ALQLVRSGLNDQRDLGAPHIL 1054
KILV +D+ + + V + +NL + AC+ EA +L G N
Sbjct: 3 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGEN----------- 51
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114
Y+ I MD +MP ++G +T+ IR + PI+ALTA + +E+GM+ L
Sbjct: 52 -YNMIFMDVQMPKVDGLLSTKMIRRDLGYTS---PIVALTAFADDSNIKECLESGMNGFL 107
Query: 1115 GKPLNRDHL 1123
KP+ R L
Sbjct: 108 SKPIKRPKL 116
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 56
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D +MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 57 VISDWDMPNMDGLELLKTIRADGAMSA--LPVLMVTARAKKENIIAAAQAGASGYVVKPF 114
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 115 TAATLEEKL 123
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
Length = 129
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 53
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 54 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEADAENIKALAQAGASGYVVKPF 111
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 112 TAATLEEKL 120
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89k
Length = 132
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 56
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D +MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 57 VISDWDMPNMDGLELLKTIRADGAMSA--LPVLMVTAKAKKENIIAAAQAGASGYVVKPF 114
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 115 TAATLEEKL 123
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD+ +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 3 KFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 49
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 50 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 107
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 108 TAATLEEKL 116
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein In
Aqueous Solution By Nuclear Magnetic Resonance Methods
Length = 129
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 53
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 54 VISDWNMPNMDGLELLKTIRADGAMS--ALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 112 TAATLEEKL 120
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV +D L + L+ TV+ C +GE LN+ P+D +
Sbjct: 4 RVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXY---XALNE----------PFDVV 50
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
++D +P+ +G+E + RE + V+ P++ LTA E K + G D +L KP +
Sbjct: 51 ILDIXLPVHDGWEILKSXRE----SGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFD 106
Query: 1120 RDHLMEAIKYL 1130
L+ ++ L
Sbjct: 107 LRELIARVRAL 117
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed
With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed
With Bef3- And Mn2+
Length = 128
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 53 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTARAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From Bacillus
Subtilis
Length = 136
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 21/124 (16%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
KKILV DD + + + NL G V +GE AL+ + + P D
Sbjct: 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALK--------KAETEKP-----D 49
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT--IEAGMDVHLG 1115
I++D +P ++G E +++R++ ++ PI+ LTA EE DK +E G D ++
Sbjct: 50 LIVLDVMLPKLDGIEVCKQLRQQ----KLMFPILMLTA--KDEEFDKVLGLELGADDYMT 103
Query: 1116 KPLN 1119
KP +
Sbjct: 104 KPFS 107
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 53 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENVIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response Regulator
Of Bacterial Chemotaxis
Length = 128
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G + +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GFGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
I+ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 53 IICDWNMPNMDGLELLKTIRADSAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
Length = 143
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+R ++LVADD R V + L G V C NG A Q++ + +
Sbjct: 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKV-LCVNG--AEQVLDAMAEED---------- 58
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD +++D MP MNG + +++R + + P++ L+A ++ E +AG L
Sbjct: 59 YDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLA 118
Query: 1116 KPLNRDHLMEAIKYL 1130
KP+ L++ + L
Sbjct: 119 KPVVAAKLLDTLADL 133
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter Pylori
Length = 129
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
PL K+LV DDS +RR+ + L LG V E+G A + + + + +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTK-------- 53
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
++ MP MNG + +K+R + + + IPII +T E ++AG++ +
Sbjct: 54 ----VLITAWNMPEMNGLDLVKKVRSDSRFKE--IPIIMITTEGGKAEVITALKAGVNNY 107
Query: 1114 LGKPLNRDHLMEAIKYL 1130
+ KP L E ++ +
Sbjct: 108 IVKPFTPQVLKEKLEVV 124
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD+ +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 3 KFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 49
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ TA E +AG ++ KP
Sbjct: 50 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMTTAEAKKENIIAAAQAGASGYVVKPF 107
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 108 TAATLEEKL 116
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And Dynamics
Of Chemotaxis Y Protein Using Three-And Four-Dimensional
Heteronuclear (13c,15n) Nmr Spectroscopy
Length = 128
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 53 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of
The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of
The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 53
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 54 VISDWRMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 112 TAATLEEKL 120
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 53 VISDWMMPNMDGLELLKTIRADGAMSA--LPVLMVTARAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 53
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 54 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 112 TAATLEEKL 120
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 53
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 54 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 112 TPATLEEKL 120
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 53 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 53 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TPATLEEKL 119
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G + +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GFGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
I+ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 53 IISDWNMPNMDGLELLKTIRADSAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G + +
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GFGF 53
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
I+ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 54 IISDWNMPNMDGLELLKTIRADSAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 112 TAATLEEKL 120
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In Complex
With Bef3 And The Effect Of Ph On Bef3 Binding, Possible
Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
KKIL+ DD + + + N+ G V NG AL+ Q + P D
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALE--------QFEAEQP-----DI 48
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI--EAGMDVHLGK 1116
I++D +P ++G E + IR+ +PI+ L+A S E DK I E G D ++ K
Sbjct: 49 IILDLMLPEIDGLEVAKTIRKTS-----SVPILMLSAKDS--EFDKVIGLELGADDYVTK 101
Query: 1117 PLNRDHLMEAIKYL 1130
P + L +K L
Sbjct: 102 PFSNRELQARVKAL 115
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + +P++ +TA E +AG ++ KP
Sbjct: 53 VISDWNMPNMDGLELLKTIRAXXAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
++ILV DD L + I LR G +G AL VR L D
Sbjct: 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE-------------LRPDL 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+L+D +P MNG + R +R + +PI+ LTA + +E+G D ++ KP
Sbjct: 53 VLLDLMLPGMNGIDVCRVLRADSG-----VPIVMLTAKTDTVDVVLGLESGADDYIMKPF 107
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 53 VISDWMMPNMDGLELLKTIRADGAMSA--LPVLMVTALAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 53
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +T+ E +AG ++ KP
Sbjct: 54 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTSEAKKENIIAAAQAGASGYVVKPF 111
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 112 TAATLEEKL 120
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG + KP
Sbjct: 53 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGWVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 53
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +T E +AG ++ KP
Sbjct: 54 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTVEAKKENIIAAAQAGASGYVVKPF 111
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 112 TAATLEEKL 120
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 53
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +T E +AG ++ KP
Sbjct: 54 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTTEAKKENIIAAAQAGASGYVVKPF 111
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 112 TAATLEEKL 120
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17 Replaced
By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17 Replaced
By Gly (M17g)
Length = 130
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 8 KFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 54
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 55 VISDWNMPNMDGLELLKTIRADGAMS--ALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 112
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 113 TAATLEEKL 121
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 53
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +T E +AG ++ KP
Sbjct: 54 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTMEAKKENIIAAAQAGASGYVVKPF 111
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 112 TAATLEEKL 120
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ + A E +AG ++ KP
Sbjct: 53 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVIAEAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14 Replaced
By Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By
Gly
Length = 129
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 7 KFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 53
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 54 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 112 TAATLEEKL 120
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of Chey
Length = 128
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 53 VISAWNMPNMDGLELLKTIRADGAMS--ALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At 1.86
A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At 1.86
A Resolution
Length = 136
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 15/128 (11%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ DD + E+ LR G V +GE ALQ + L D ++
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIYKNLPDA-------------LI 53
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D +P ++GY +++R+ +PI+ LTA EAG + +L KP
Sbjct: 54 CDVLLPGIDGYTLCKRVRQHPLTKT--LPILXLTAQGDISAKIAGFEAGANDYLAKPFEP 111
Query: 1121 DHLMEAIK 1128
L+ +K
Sbjct: 112 QELVYRVK 119
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of Chey
Length = 130
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV D +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 8 KFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 54
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 55 VISDWNMPNMDGLELLKTIRADGAMS--ALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 112
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 113 TAATLEEKL 121
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV D +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 53 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K +V DD +L++V+E L+ LG V+ GE LND+ A H+
Sbjct: 4 KIAVVDDDKNILKKVSE-KLQQLG-RVKTFLTGE-------DFLNDEE---AFHV----- 46
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+++D +P +GYE R I+E V I LT E K EAG D ++ KP
Sbjct: 47 VVLDVXLPDYSGYEICRXIKETRPETWV----ILLTLLSDDESVLKGFEAGADDYVTKPF 102
Query: 1119 NRDHLMEAIK 1128
N + L+ +K
Sbjct: 103 NPEILLARVK 112
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K +V DD +L++V+E L+ LG V+ GE LND+ A H+
Sbjct: 4 KIAVVDDDKNILKKVSE-KLQQLG-RVKTFLTGE-------DFLNDEE---AFHV----- 46
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+++D +P +GYE R I+E V I LT E K EAG D ++ KP
Sbjct: 47 VVLDVXLPDYSGYEICRXIKETRPETWV----ILLTLLSDDESVLKGFEAGADDYVTKPF 102
Query: 1119 NRDHLMEAIK 1128
N + L+ +K
Sbjct: 103 NPEILLARVK 112
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 375 ANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGL---LNSILDTSK 431
A +H+IR + I G I + ET + +N+ N+L L + IL+ SK
Sbjct: 137 ARVAHEIRNPITIIGGFIMRMKKHL---DDPETLKKYINIITNELSRLETIVKEILEYSK 193
Query: 432 VEAGKMQLIE-EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKL 490
+ Q++E +F++ EL+ +V LF + ++ + + + +V+ DR ++
Sbjct: 194 ----ERQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDL----RVEADRTRI 245
Query: 491 KQILSNLLSNAVKFTSE 507
KQ+L NL+ NA++ T E
Sbjct: 246 KQVLINLVQNAIEATGE 262
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G K+LV D++ + R V + L HLG V + E L++V +
Sbjct: 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH--------------EHK 52
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDVHLGK 1116
+ MD MP + Y+ +I E+ + + P ++AL+ + +K + G+D L K
Sbjct: 53 VVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLK 112
Query: 1117 PLNRDHLMEAIKYL 1130
P++ D++ + + L
Sbjct: 113 PVSLDNIRDVLSDL 126
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 53
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 54 VISXWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 112 TAATLEEKL 120
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 53 VISXWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 118/308 (38%), Gaps = 70/308 (22%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPG--SELETNLRQM 412
K++E ++ +R K+ AN SH++R L I E Y G S L+ L +
Sbjct: 8 KELERLKRIDRM---KTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVI 64
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD- 471
+N L LLN +LD S++E +Q+ E D+ +L+E V+ A V V+ +
Sbjct: 65 IDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFES 124
Query: 472 ----PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
P + + D +++Q+L NLL+N VK
Sbjct: 125 NVPCPVEAYI--------DPTRIRQVLLNLLNNGVK------------------------ 152
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
Y K A V ++D + V+D G GIP + +F
Sbjct: 153 ---------------YSKKDAPDKYVKVILDEKDGGVL---IIVEDNGIGIPDHAKDRIF 194
Query: 588 ENYVQVKXXXXXXXXXX----XIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
E + +V I + +V L GG I + E G RF F+ I +
Sbjct: 195 EQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV----ESEVGKGSRF--FVWIPKD 248
Query: 644 SANDNNTQ 651
A ++N Q
Sbjct: 249 RAGEDNRQ 256
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 118/308 (38%), Gaps = 70/308 (22%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPG--SELETNLRQM 412
K++E ++ +R K+ AN SH++R L I E Y G S L+ L +
Sbjct: 8 KELERLKRIDRM---KTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVI 64
Query: 413 NVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD- 471
+N L LLN +LD S++E +Q+ E D+ +L+E V+ A V V+ +
Sbjct: 65 IDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFES 124
Query: 472 ----PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527
P + + D +++Q+L NLL+N VK
Sbjct: 125 NVPCPVEAYI--------DPTRIRQVLLNLLNNGVK------------------------ 152
Query: 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVF 587
Y K A V ++D + V+D G GIP + +F
Sbjct: 153 ---------------YSKKDAPDKYVKVILDEKDGGVL---IIVEDNGIGIPDHAKDRIF 194
Query: 588 ENYVQVKXXXXXXXXXX----XIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREA 643
E + +V I + +V L GG I + E G RF F+ I +
Sbjct: 195 EQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV----ESEVGKGSRF--FVWIPKD 248
Query: 644 SANDNNTQ 651
A ++N Q
Sbjct: 249 RAGEDNRQ 256
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of Chey
Length = 127
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV D +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 5 KFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 51
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ +TA E +AG ++ KP
Sbjct: 52 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPF 109
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 110 TAATLEEKL 118
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
KKIL+ DD + + + N+ G V NG AL+ Q + P D
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALE--------QFEAEQP-----DI 48
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI--EAGMDVHLGK 1116
I++ +P ++G E + IR+ +PI+ L+A S E DK I E G D ++ K
Sbjct: 49 IILXLMLPEIDGLEVAKTIRKTS-----SVPILMLSAKDS--EFDKVIGLELGADDYVTK 101
Query: 1117 PLNRDHLMEAIKYL 1130
P + L +K L
Sbjct: 102 PFSNRELQARVKAL 115
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 20/130 (15%)
Query: 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
+PL GK+IL+ +D + R + + LGAT +G AL+L LG
Sbjct: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALEL----------LGG--- 49
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
D ++ D MP MNG + IR + P++ ++A + + K + G++
Sbjct: 50 FTPDLMICDIAMPRMNGLKLLEHIRNRGDQT----PVLVISATENMADIAKALRLGVEDV 105
Query: 1114 LGKP---LNR 1120
L KP LNR
Sbjct: 106 LLKPVKDLNR 115
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD R+ E L V +G AL + A LP D I
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM------------AARDLP-DII 49
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+D MP M+G+ RK++++ HIP++ +TA + + +E+G L KP++
Sbjct: 50 LLDVMMPGMDGFTVCRKLKDDPTTR--HIPVVLITALDGRGDRIQGLESGASDFLTKPID 107
Query: 1120 RDHLMEAIKYL 1130
L ++ L
Sbjct: 108 DVMLFARVRSL 118
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ D MP M+G E + IR + + +P++ + A E +AG + KP
Sbjct: 53 VISDWNMPNMDGLELLKTIRADGAMSA--LPVLMVIAEAKKENIIAAAQAGASGWVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp
Length = 459
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+ILV DD R+ E L V +G AL + RDL D I
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMA------ARDLP-------DII 50
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+D MP M+G+ RK++++ HIP++ +TA + + +E+G L KP++
Sbjct: 51 LLDVMMPGMDGFTVCRKLKDDPTTR--HIPVVLITALDGRGDRIQGLESGASDFLTKPID 108
Query: 1120 RDHLMEAIKYL 1130
L ++ L
Sbjct: 109 DVMLFARVRSL 119
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus Radiodurans
Length = 249
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
++ILV +D + V +L G V+ ++ L R D DL
Sbjct: 38 QRILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGLIKARE---DHPDL---------- 84
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
IL+D +P +G + +++R+ +PII LTA + EE + + G D +L KP
Sbjct: 85 ILLDLGLPDFDGGDVVQRLRKNSA-----LPIIVLTARDTVEEKVRLLGLGADDYLIKPF 139
Query: 1119 NRDHLMEAIK 1128
+ D L+ +K
Sbjct: 140 HPDELLARVK 149
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+ +KIL+ DD +R + G NG AL +V +R
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV----TKERP-------- 48
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +L+D ++P M+G E ++++ ++ +I +I +TA+ + A ++ E G H
Sbjct: 49 -DLVLLDMKIPGMDGIEILKRMKVIDE----NIRVIIMTAYGELDMAQESKELGALTHFA 103
Query: 1116 KPLNRDHLMEAIK 1128
KP + D + +A+K
Sbjct: 104 KPFDIDEIRDAVK 116
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ MP M+G E + IR + + +P++ + A E +AG ++ KP
Sbjct: 53 VISXWNMPNMDGLELLKTIRADGAMSA--LPVLMVIAEAKKENIIAAAQAGASGYVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENG-EAALQLVRSGLNDQRDLGAPHILP 1055
+ K+ILV DD + E L+ VE NG +A ++L P I+
Sbjct: 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF---------EPAIMT 55
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
+D MP ++G + R +R+ + NQ P I + + + + + + G D +L
Sbjct: 56 -----LDLSMPKLDGLDVIRSLRQNKVANQ---PKILVVSGLDKAKLQQAVTEGADDYLE 107
Query: 1116 KPLNRDHLMEAIKYL 1130
KP + D L++ I L
Sbjct: 108 KPFDNDALLDRIHDL 122
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli Phop
Length = 121
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV +D+ +LR ++ ++ G V+ E+ + A LN+ +P D
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYY----LNEH--------IP-DIA 48
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
++D +P +G R+ R N V +PI+ LTA S ++ + + AG D ++ KP +
Sbjct: 49 IVDLGLPDEDGLSLIRRWRS----NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFH 104
>pdb|4E7O|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl Family
Response Regulator Spr1814 From Streptococcus Pneumoniae
pdb|4E7O|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl Family
Response Regulator Spr1814 From Streptococcus Pneumoniae
pdb|4E7P|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl Family
Response Regulator Spr1814 From Streptococcus Pneumoniae
In The Presence Of The Phosphoryl Analog Beryllofluoride
pdb|4E7P|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl Family
Response Regulator Spr1814 From Streptococcus Pneumoniae
In The Presence Of The Phosphoryl Analog Beryllofluoride
Length = 150
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEA---CENGEAALQLVRSGLNDQRDLGAPHILPY 1056
K+LVA+D MLR A L L VE+ +NG+ A+QL+
Sbjct: 22 KVLVAEDQSMLRD-AMCQLLTLQPDVESVLQAKNGQEAIQLLEKE-------------SV 67
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D ++D EMP+ G E IR E+ +V + +T ++ ++AG+D ++ K
Sbjct: 68 DIAILDVEMPVKTGLEVLEWIRSEKLETKV----VVVTTFKRAGYFERAVKAGVDAYVLK 123
Query: 1117 PLNRDHLMEAI 1127
+ LM+ +
Sbjct: 124 ERSIADLMQTL 134
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 17/121 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+ V DD +R V E L G T ENG L + S D +L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD-------------VLL 52
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D MP M+G ++I K+ +P+I +TAH + A + G +L KP +
Sbjct: 53 SDIRMPGMDGLALLKQI----KQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 1121 D 1121
D
Sbjct: 109 D 109
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of Beryllofluoride-
Activated Ntrc Receiver Domain
Length = 124
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 17/121 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+ V DD +R V E L G T ENG L + S D +L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD-------------VLL 52
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D MP M+G ++I++ +P+I +TAH + A + G +L KP +
Sbjct: 53 SDIRMPGMDGLALLKQIKQRHPM----LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 1121 D 1121
D
Sbjct: 109 D 109
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K LV DD +RR+ L+ LG VE E+G AL +++G Y +
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGF 52
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
++ MP M+G E + IR + + +P++ + A E +AG + KP
Sbjct: 53 VISXWNMPNMDGLELLKTIRADGAMSA--LPVLMVIAEAKKENIIAAAQAGASGWVVKPF 110
Query: 1119 NRDHLMEAI 1127
L E +
Sbjct: 111 TAATLEEKL 119
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of Ntrc
Length = 124
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 17/121 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+ V DD +R V E L G T ENG L + S D +L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD-------------VLL 52
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D MP M+G ++I K+ +P+I +TAH + A + G +L KP +
Sbjct: 53 SDIRMPGMDGLALLKQI----KQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 1121 D 1121
D
Sbjct: 109 D 109
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+ +KIL+ DD +R + G NG AL +V +R
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV----TKERP-------- 48
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +L+D ++P M+G E ++++ ++ +I +I +TA+ + ++ E G H
Sbjct: 49 -DLVLLDMKIPGMDGIEIAKRMKVIDE----NIRVIIMTAYGELDMIQESKELGALTHFA 103
Query: 1116 KPLNRDHLMEAIK 1128
KP + D + +A+K
Sbjct: 104 KPFDIDEIRDAVK 116
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+ +KIL+ DD +R + G NG AL +V +R
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV----TKERP-------- 48
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +L+D ++P M+G E ++++ ++ +I +I +TA+ + ++ E G H
Sbjct: 49 -DLVLLDMKIPGMDGIEILKRMKVIDE----NIRVIIMTAYGELDMIQESKELGALTHFA 103
Query: 1116 KPLNRDHLMEAIK 1128
KP + D + +A+K
Sbjct: 104 KPFDIDEIRDAVK 116
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+ +KIL+ DD +R + G NG AL +V +R
Sbjct: 3 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV----TKERP-------- 50
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +L+D ++P M+G E ++++ ++ +I +I +TA+ + ++ E G H
Sbjct: 51 -DLVLLDMKIPGMDGIEILKRMKVIDE----NIRVIIMTAYGELDMIQESKELGALTHFA 105
Query: 1116 KPLNRDHLMEAIK 1128
KP + D + +A+K
Sbjct: 106 KPFDIDEIRDAVK 118
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+KIL+ DD +R + G NG AL +V +R D
Sbjct: 2 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV----TKERP---------DL 48
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+L+D ++P M+G E ++++ ++ +I +I +TA+ + ++ E G H KP
Sbjct: 49 VLLDMKIPGMDGIEILKRMKVIDE----NIRVIIMTAYGELDMIQESKELGALTHFAKPF 104
Query: 1119 NRDHLMEAIK 1128
+ D + +A+K
Sbjct: 105 DIDEIRDAVK 114
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
Length = 124
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+ +KIL+ DD +R + G NG AL +V +R
Sbjct: 1 MMNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV----TKERP-------- 48
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +L+D ++P M+G E ++++ ++ +I +I +TA+ + ++ E G H
Sbjct: 49 -DLVLLDMKIPGMDGIEILKRMKVIDE----NIRVIIMTAYGELDMIQESKELGALTHFA 103
Query: 1116 KPLNRDHLMEAIK 1128
KP + D + +A+K
Sbjct: 104 KPFDIDEIRDAVK 116
>pdb|4AFP|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined
In The Presence Of Samarium
Length = 367
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 179 DALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYG--GRLSIATNDGKVLV-----QG 231
DA F + G++G + V+ P + + LF GIN YG LS ND K ++ +G
Sbjct: 68 DAAFRDAKGLHGHQPWVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKKG 127
Query: 232 IPNTRMTIVNDSISFQLITNTKTR 255
+P I+ D +F T+ TR
Sbjct: 128 LPINEAVILVDEDNFPGRTDQPTR 151
>pdb|4AFR|A Chain A, The Structure Of Metacaspase 2 (C213a Mutant) From T.
Brucei
pdb|4AFV|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined
In The Presence Of Calcium Chloride
Length = 367
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 179 DALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYG--GRLSIATNDGKVLV-----QG 231
DA F + G++G + V+ P + + LF GIN YG LS ND K ++ +G
Sbjct: 68 DAAFRDAKGLHGHQPWVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKKG 127
Query: 232 IPNTRMTIVNDSISFQLITNTKTR 255
+P I+ D +F T+ TR
Sbjct: 128 LPINEAVILVDEDNFPGRTDQPTR 151
>pdb|4AF8|A Chain A, The Structural Basis For Metacaspase Substrate Specificity
And Activation
Length = 367
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 179 DALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYG--GRLSIATNDGKVLV-----QG 231
DA F + G++G + V+ P + + LF GIN YG LS ND K ++ +G
Sbjct: 68 DAAFRDAKGLHGHQPWVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKRG 127
Query: 232 IPNTRMTIVNDSISFQLITNTKTR 255
+P I+ D +F T+ TR
Sbjct: 128 LPINEAVILVDEDNFPGRTDQPTR 151
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
Query: 999 KKILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
+++L+A+D ++R LR G V +G+ A++L +L P D
Sbjct: 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELA--------ELHKP-----D 60
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
++MD +MP +G +A +I + PI+ LTA + ++ +AG +L KP
Sbjct: 61 LVIMDVKMPRRDGIDAASEIASKRI-----APIVVLTAFSQRDLVERARDAGAMAYLVKP 115
Query: 1118 LNRDHLMEAIK 1128
+ L+ AI+
Sbjct: 116 FSISDLIPAIE 126
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY- 1056
++ILV +D +R + L G E+ ++A+ + LN+ P+
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAV----NQLNE----------PWP 47
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT--IEAGMDVHL 1114
D IL+D +P +G + + ++ E IP++ LTA GEE D+ +E G D ++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRD--IPVVMLTAR--GEEEDRVRGLETGADDYI 103
Query: 1115 GKPLNRDHLMEAIK 1128
KP + L+ IK
Sbjct: 104 TKPFSPKELVARIK 117
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY- 1056
++ILV +D +R + L G E+ ++A+ + LN+ P+
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAV----NQLNE----------PWP 47
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT--IEAGMDVHL 1114
D IL+D +P +G + + ++ E IP++ LTA GEE D+ +E G D ++
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRD--IPVVMLTAR--GEEEDRVRGLETGADDYI 103
Query: 1115 GKPLNRDHLMEAIK 1128
KP + L+ IK
Sbjct: 104 TKPFSPKELVARIK 117
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLG 421
+AE+ LA A+ SH+IR L G I+L +E P + RQ A + L
Sbjct: 7 RAEKMEAVTHLA-ASISHEIRNPLTAARGFIQL--IEEQPLAA--DKRRQYARIAIEELD 61
Query: 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFS 481
+I+ A E +V +E V+D+ P+A V++ ++ FS
Sbjct: 62 RAEAIITDYLTFAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDI-----QATLAPFS 116
Query: 482 KVKGDRVKLKQILSNLLSNAVKFTSEG 508
V G+R K +Q L N++ NA++ G
Sbjct: 117 -VIGEREKFRQCLLNVMKNAIEAMPNG 142
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 38.1 bits (87), Expect = 0.029, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L+ KKIL+ +DS + L G TVE GEAA++ V G
Sbjct: 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYP----------- 51
Query: 1056 YDYILMDCEM-PIMNGYEATRKIREEEKRNQVHIPIIALTAH 1096
D ILMD E+ M+G + I++ + +P++ LTAH
Sbjct: 52 -DLILMDIELGEGMDGVQTALAIQQISE-----LPVVFLTAH 87
>pdb|3CNB|A Chain A, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|B Chain B, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|C Chain C, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
Length = 143
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMD 1111
H + D +++D M M+G+ +I+ +I +IA+T ++ + + + G +
Sbjct: 51 HTVKPDVVMLDLMMVGMDGFSICHRIKSTPA--TANIIVIAMTGALTDDNVSRIVALGAE 108
Query: 1112 VHLGKPLNRDHLMEAIKYL 1130
GKPLN L + IK L
Sbjct: 109 TCFGKPLNFTLLEKTIKQL 127
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+ V DD +R V E L G T ENG L + S D +L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD-------------VLL 52
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MP M+G ++I K+ +P+I +TAH + A + G +L KP +
Sbjct: 53 SXIRMPGMDGLALLKQI----KQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 1121 D 1121
D
Sbjct: 109 D 109
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 443 DFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAV 502
+F++ EL+ +V LF + ++ + + + +V+ DR ++KQ+L NL+ NA+
Sbjct: 5 EFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDL----RVEADRTRIKQVLINLVQNAI 60
Query: 503 KFTSE-GHISV 512
+ T E G I +
Sbjct: 61 EATGENGKIKI 71
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain From
Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain From
Rhodospirillum Rubrum
Length = 152
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
I+ +D + R+ E N+R G E A +G +AL + D + G
Sbjct: 7 IVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYL---FGDDKS-GRVSAGRAQL 62
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+L+D +P G + + ++E + P++ LT E + + G +V++ KP+
Sbjct: 63 VLLDLNLPDXTGIDILKLVKENPHTRRS--PVVILTTTDDQREIQRCYDLGANVYITKPV 120
Query: 1119 NRDHLMEAIKYL 1130
N ++ AI+ L
Sbjct: 121 NYENFANAIRQL 132
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 36.2 bits (82), Expect = 0.097, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+ +KIL+ DD +R + G NG AL +V +R
Sbjct: 1 MMNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV----TKERP-------- 48
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +L+ ++P M+G E ++++ ++ +I +I +TA+ + ++ E G H
Sbjct: 49 -DLVLLXMKIPGMDGIEILKRMKVIDE----NIRVIIMTAYGELDMIQESKELGALTHFA 103
Query: 1116 KPLNRDHLMEAIK 1128
KP + D + +A+K
Sbjct: 104 KPFDIDEIRDAVK 116
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 18/131 (13%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEA-CENGEAALQLVRSGLNDQRDLGAPHILPY 1056
GK++L+ DD+ +R + + + G V NG A++ + L
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE-------------LKP 47
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D + MD MP MNG +A ++I + + + II +A + I+AG + K
Sbjct: 48 DIVTMDITMPEMNGIDAIKEIMKIDPNAK----IIVCSAMGQQAMVIEAIKAGAKDFIVK 103
Query: 1117 PLNRDHLMEAI 1127
P ++EA+
Sbjct: 104 PFQPSRVVEAL 114
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D I++D MP+++G +R + +P+ L+A S ++ +EAG D +L K
Sbjct: 53 DAIVLDINMPVLDGVSVVTALRAMDN----DVPVCVLSARSSVDDRVAGLEAGADDYLVK 108
Query: 1117 PLNRDHLMEAIKYL 1130
P L+ +K L
Sbjct: 109 PFVLAELVARVKAL 122
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 18/131 (13%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEA-CENGEAALQLVRSGLNDQRDLGAPHILPY 1056
GK++L+ DD+ +R + + + G V NG A++ + L
Sbjct: 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE-------------LKP 48
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D + MD MP MNG +A ++I + + + II +A + I+AG + K
Sbjct: 49 DIVTMDITMPEMNGIDAIKEIMKIDPNAK----IIVCSAMGQQAMVIEAIKAGAKDFIVK 104
Query: 1117 PLNRDHLMEAI 1127
P ++EA+
Sbjct: 105 PFQPSRVVEAL 115
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
Query: 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY 1056
R +IL+ +DS + L G E NG A++ + L P
Sbjct: 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFL--------SLTRP----- 52
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D I+ D MP M+GY R ++ + IP+I LT + +++E G D + K
Sbjct: 53 DLIISDVLMPEMDGYALCRWLKGQPDLRT--IPVILLTILSDPRDVVRSLECGADDFITK 110
Query: 1117 PLNRDHLMEAIKYL 1130
P L +K L
Sbjct: 111 PCKDVVLASHVKRL 124
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+ +KIL+ DD +R + G NG AL +V +R
Sbjct: 1 MMNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV----TKERP-------- 48
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
D +L+D ++P M+G E ++++ ++ +I +I +TA+ + ++ E G
Sbjct: 49 -DLVLLDMKIPGMDGIEILKRMKVIDE----NIRVIIMTAYGELDMIQESKELGALTAFA 103
Query: 1116 KPLNRDHLMEAIK 1128
KP + D + +A+K
Sbjct: 104 KPFDIDEIRDAVK 116
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT--IEAGMDVHL 1114
D IL++ +P +G + + ++ E IP++ LTA GEE D+ +E G D ++
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRD--IPVVMLTAR--GEEEDRVRGLETGADDYI 103
Query: 1115 GKPLNRDHLMEAIK 1128
KP + L+ IK
Sbjct: 104 TKPFSPKELVARIK 117
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++LV DD + + ++L+ G V NG AL R D +
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDA-------------V 71
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
++D P +G+ R++R + + P + LTA S ++ + G D ++ KP +
Sbjct: 72 ILDVXXPGXDGFGVLRRLRAD----GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFS 127
Query: 1120 RDHLMEAIKYL 1130
+ ++ ++ +
Sbjct: 128 LEEVVARLRVI 138
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
Length = 121
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 22/120 (18%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+L+ +D +RR L G V E QR L D I+
Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAET-------------LQRGLLEAATRKPDLII 50
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK--TIEAGMDVHLGKPL 1118
+D +P +G E R +R+ +P+I L+A EE+DK ++AG D +L KP
Sbjct: 51 LDLGLPDGDGIEFIRDLRQWSA-----VPVIVLSAR--SEESDKIAALDAGADDYLSKPF 103
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 35.0 bits (79), Expect = 0.25, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY- 1056
++ILV +D +R + L G E+ ++A+ + LN+ P+
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAV----NQLNE----------PWP 47
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT--IEAGMDVHL 1114
D IL+ +P +G + + +R E IP++ LTA GEE D+ +E G D +
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLRRESMTRD--IPVVMLTAR--GEEEDRVRGLETGADDCI 103
Query: 1115 GKPLNRDHLMEAIK 1128
KP + L+ IK
Sbjct: 104 TKPFSPKELVARIK 117
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 24/131 (18%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAAL-QLVRSGLNDQRDLGAPHILPYDYI 1059
+L+ +D L LR G +G AAL + R+G D +
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGA--------------DIV 52
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI--EAGMDVHLGKP 1117
L+D +P M+G + +++R +P+I +TA S E DK + E G D ++ KP
Sbjct: 53 LLDLMLPGMSGTDVCKQLRARSS-----VPVIMVTARDS--EIDKVVGLELGADDYVTKP 105
Query: 1118 LNRDHLMEAIK 1128
+ L+ I+
Sbjct: 106 YSARELIARIR 116
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 16/111 (14%)
Query: 1018 LRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076
L+ LG VE E+G AL +++G Y +++ D MP M+G E +
Sbjct: 24 LKELGFNNVEDAEDGVDALNKLQAG-------------GYGFVISDWNMPNMDGLELLKT 70
Query: 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
IR + + +P++ +TA E +AG ++ KP L E +
Sbjct: 71 IRADGAMSA--LPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 119
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex With
Chey6 From R. Sphaeroides
Length = 145
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLG--ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+++ DD+ M+R ++ L V NG+ AL + + N D
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPN------------VDL 63
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
IL+D EMP+M+G E +R + + + I +++ A A + E G D + KP
Sbjct: 64 ILLDIEMPVMDGMEF---LRHAKLKTRAKICMLSSVAVSGSPHAARARELGADGVVAKP 119
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome Response
Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome Response
Regulator, Rcpb
Length = 149
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 1051 PHILPYD-YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
P I P IL+D +P +G E ++I+++E + IP++ +T + ++ +
Sbjct: 57 PDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKK--IPVVIMTTSSNPKDIEICYSYS 114
Query: 1110 MDVHLGKPLNRDHLMEAIK 1128
+ ++ KPL D L E ++
Sbjct: 115 ISSYIVKPLEIDRLTETVQ 133
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 29/118 (24%)
Query: 997 RGKKILVADDSMMLRRV------AEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGA 1050
R ++LV DDS +R V ++ +++ +G + E E A++L
Sbjct: 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL------------- 70
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA 1108
D I MD EMP +NG EA + I ++ + + + ++ E A TIEA
Sbjct: 71 ----KPDVITMDIEMPNLNGIEALKLIMKKAPTR------VIMVSSLTEEGAAITIEA 118
>pdb|3CZ5|A Chain A, Crystal Structure Of Two-component Response Regulator, Luxr
Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|B Chain B, Crystal Structure Of Two-component Response Regulator, Luxr
Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|C Chain C, Crystal Structure Of Two-component Response Regulator, Luxr
Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|D Chain D, Crystal Structure Of Two-component Response Regulator, Luxr
Family, From Aurantimonas Sp. Si85-9a1
Length = 153
Score = 33.9 bits (76), Expect = 0.53, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D ++MD +P G EATR IR+ + + I+ T H A K EAG ++ K
Sbjct: 53 DIVVMDLTLPGPGGIEATRHIRQWDGAAR----ILIFTMHQGSAFALKAFEAGASGYVTK 108
Query: 1117 PLNRDHLMEAIK 1128
+ L++AI+
Sbjct: 109 SSDPAELVQAIE 120
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 1001 ILVADDSMMLRRVAEINLRHLG--ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+++ DD+ M+R ++ L V NG+ AL + + N D
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPN------------VDL 63
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
IL++ EMP+M+G E +R + + + I ++A A A + E G D + KP
Sbjct: 64 ILLNIEMPVMDGMEF---LRHAKLKTRAKICMLASVAVSGSPHAARARELGADGVVAKP 119
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative Luxo
Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ +DS L + + ++ + E G A+Q + P + I
Sbjct: 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS--------KPQL-----I 52
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
++D ++P M+G + I + N + +I TAH S + A I+ G + L KP+N
Sbjct: 53 ILDLKLPDMSGEDVLDWINQ----NDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPIN 108
Query: 1120 RDHLMEAI 1127
D L ++
Sbjct: 109 ADRLKTSV 116
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY-- 1058
+ V DD M +R LR G VE + L+ H P +
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLE---------------HRRPEQHGC 51
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
+++D MP M+G E ++E+ IPI+ +TAH + ++AG L KP
Sbjct: 52 LVLDMRMPGMSGIE----LQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPF 107
Query: 1119 NRDHLMEAIK 1128
L++AI+
Sbjct: 108 EEQALLDAIE 117
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPY- 1056
++ILV +D +R + L G E+ ++A+ + LN+ P+
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAV----NQLNE----------PWP 47
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT--IEAGMDVHL 1114
D IL+ +P +G + + ++ E IP++ LTA GEE D+ +E G D +
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLKRESMTRD--IPVVMLTAR--GEEEDRVRGLETGADDCI 103
Query: 1115 GKPLNRDHLMEAIK 1128
KP + L+ IK
Sbjct: 104 TKPFSPKELVARIK 117
>pdb|2RDM|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
Length = 132
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 23/138 (16%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L IL+ADD +L E L G V A +G A++ ++SG
Sbjct: 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEXLKSG------------AA 50
Query: 1056 YDYILMD---CEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112
D ++ D C+ P +G++ R RE + + PI+ ++ H + E A + +
Sbjct: 51 IDGVVTDIRFCQPP--DGWQVARVAREIDP----NXPIVYISGHAALEWASNGVPD--SI 102
Query: 1113 HLGKPLNRDHLMEAIKYL 1130
L KP L+ A+ L
Sbjct: 103 ILEKPFTSAQLITAVSQL 120
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus Marisnigri
Jr1
Length = 138
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILV DDS + V L G +GE L+ A + P D +L
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLE-------------ALNATPPDLVL 52
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAH-ISGEEADKTIEAGMDVHLGKPLN 1119
+D +G+E +I+ + IP++ LTA ++ EEA++ + ++ ++ KP
Sbjct: 53 LDIXXEPXDGWETLERIKTDPATRD--IPVLXLTAKPLTPEEANE-YGSYIEDYILKPTT 109
Query: 1120 RDHLMEAIKYL 1130
L EAI+++
Sbjct: 110 HHQLYEAIEHV 120
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 23/129 (17%)
Query: 1003 VADDSMMLRRVAEINLRHLGATVEACENGEAALQL---VRSGLNDQRDLGAPHILPYDYI 1059
+ DD +R+ L G V+ ++ EA L VR+G+ +
Sbjct: 8 IVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGV----------------L 51
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+ D MP M+G E R + + +++IP I +T H A + ++AG + KP
Sbjct: 52 VTDLRMPDMSGVELLRNLGDL----KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFE 107
Query: 1120 RDHLMEAIK 1128
++EAI+
Sbjct: 108 DTVIIEAIE 116
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
Length = 122
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D IL+D +P NG TR +RE + II +T + +E G D ++ K
Sbjct: 48 DLILLDINLPDENGLXLTRALRERST-----VGIILVTGRSDRIDRIVGLEXGADDYVTK 102
Query: 1117 PLNRDHLMEAIKYL 1130
PL L+ +K L
Sbjct: 103 PLELRELVVRVKNL 116
>pdb|2GKG|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility Prot
pdb|2I6F|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|B Chain B, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|C Chain C, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
Length = 127
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
KKIL+ + L L G TV+ +G+ +++ +R D+ DL
Sbjct: 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR---RDRPDL---------- 52
Query: 1059 ILMDCEMPI-MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+++ ++ NGY K+++++ V I II + G + ++A D ++ KP
Sbjct: 53 VVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII---GNPDGFAQHRKLKAHADEYVAKP 109
Query: 1118 LNRDHLME 1125
++ D L+E
Sbjct: 110 VDADQLVE 117
>pdb|2NT4|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility Prot
(H92f Mutant)
Length = 127
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
KKIL+ + L L G TV+ +G+ +++ +R D+ DL
Sbjct: 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR---RDRPDL---------- 52
Query: 1059 ILMDCEMPI-MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+++ ++ NGY K+++++ V I II + G + ++A D ++ KP
Sbjct: 53 VVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII---GNPDGFAQFRKLKAHADEYVAKP 109
Query: 1118 LNRDHLME 1125
++ D L+E
Sbjct: 110 VDADQLVE 117
>pdb|3MCM|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCM|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCN|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCN|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCO|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCO|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
Length = 442
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Query: 371 SLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTS 430
+ F N + I ++L L+ L +E G +L V D+L + IL+T
Sbjct: 76 DIRFLNTAVKISSSLKPDELLVLLKDIELKIGRDLNAPAWSPRVIDLDILAAEDLILETD 135
Query: 431 KVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKL 490
K+ +LI F + LLE HP + + + L K G+ VKL
Sbjct: 136 KLTIPHKELINRSFALAPLLELSKGWHHPKYVEWDLNIRL-----------KELGEIVKL 184
Query: 491 KQILSN 496
KQ L+N
Sbjct: 185 KQTLAN 190
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 1000 KILVADDSMMLRR--VAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
+++V DD + R V ++L V ++G AAL+L+++ L D
Sbjct: 17 RVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPD------------- 63
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
L+D MP M+G + +R E +V + ++AH + ++ G L K
Sbjct: 64 VALLDYRMPGMDGAQVAAAVRSYELPTRV----LLISAHDEPAIVYQALQQGAAGFLLKD 119
Query: 1118 LNRDHLMEAI 1127
R +++A+
Sbjct: 120 STRTEIVKAV 129
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEA---CENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
+++A+D MLR+ A + L L E +NG A++L+ P++
Sbjct: 6 LIIAEDQNMLRQ-AMVQLIKLHGDFEILADTDNGLDAMKLIEEY--------NPNV---- 52
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+++D EMP M G E +IR + ++I +I +T +K + +D ++ K
Sbjct: 53 -VILDIEMPGMTGLEVLAEIR----KKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKE 107
Query: 1118 LNRDHLMEAI 1127
+ + L+E I
Sbjct: 108 RSIEELVETI 117
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPSLSSSRHGF----LQS 537
V+ D+ K+ Q+L N++SNA+K++ E GH++ V + + S+ G ++
Sbjct: 37 VEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEK 96
Query: 538 ISCLFYKNKKAR 549
+ FY+ KAR
Sbjct: 97 VFDRFYRVDKAR 108
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 26/136 (19%)
Query: 999 KKILVADDSMMLRR-VAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
+KIL+ +DS +RR + + + G ++A + E GA H +
Sbjct: 5 QKILIVEDSXTIRRXLIQAIAQQTGLEIDAFDTLE----------------GARHCQGDE 48
Query: 1058 YI--LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
Y+ L+D +P EA + + E +P++ LTA IS ++ + +EAG+ ++
Sbjct: 49 YVVALVDLTLPDAPSGEAVKVLLER------GLPVVILTADISEDKREAWLEAGVLDYVX 102
Query: 1116 KPLNRDHLMEAIKYLH 1131
K +R L A+ +H
Sbjct: 103 KD-SRHSLQYAVGLVH 117
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
D ++ D +MP ++G + R+I K+ H+ +I LT H + A ++ G +L K
Sbjct: 51 DVVITDMKMPKLSGMDILREI----KKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRK 106
Query: 1117 PLNRDHLMEAI 1127
P+ L AI
Sbjct: 107 PVTAQDLSIAI 117
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+ + DD LR+ + L G TV + + AL +GL+ D ++
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEAL----AGLS--ADFAG-------IVI 52
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D MP M+G RKI + +P+I +T H A + I+ G + KP
Sbjct: 53 SDIRMPGMDGLALFRKILALDP----DLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAA 108
Query: 1121 DHLMEAIK 1128
D L+++ +
Sbjct: 109 DRLVQSAR 116
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The Receiver
Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
+ + DD LR+ + L G TV + + AL +GL+ D ++
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEAL----AGLS--ADFAG-------IVI 52
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D MP M+G RKI + +P+I +T H A + I+ G + KP
Sbjct: 53 SDIRMPGMDGLALFRKILALDP----DLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAA 108
Query: 1121 DHLMEAIK 1128
D L+++ +
Sbjct: 109 DRLVQSAR 116
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI--EAGMDVHL 1114
+ ++MD +P NG R++RE Q ++ ++ LT E DK + E G D ++
Sbjct: 49 NLVIMDINLPGKNGLLLARELRE-----QANVALMFLTGR--DNEVDKILGLEIGADDYI 101
Query: 1115 GKPLNRDHL 1123
KP N L
Sbjct: 102 TKPFNPREL 110
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From Desulfuromonas
Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From Desulfuromonas
Acetoxidans
Length = 147
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 1051 PHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGM 1110
PH+ I+ + MP ++G + +++ + IP+IAL+ + +E + ++ G
Sbjct: 53 PHL-----IITEANMPKISGMDLFNSLKKNPQ--TASIPVIALSGRATAKEEAQLLDMGF 105
Query: 1111 DVHLGKPLNRDHLMEAIK 1128
+ KP+N L IK
Sbjct: 106 IDFIAKPVNAIRLSARIK 123
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator Spo0a
Length = 130
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
K+ +ADD+ R L + ++ + + ++++ + N Q L D +
Sbjct: 4 KVCIADDN-----------RELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDIL 52
Query: 1060 LMDCEMPIMNGYEATRKIRE--EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
L+D MP ++G +IR E + N +I LTA + K +E G + KP
Sbjct: 53 LLDIIMPHLDGLAVLERIRAGFEHQPN-----VIMLTAFGQEDVTKKAVELGASYFILKP 107
Query: 1118 LNRDHLMEAIKYLH 1131
+ ++L I+ ++
Sbjct: 108 FDMENLAHHIRQVY 121
>pdb|2NT3|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs (Y102a Mutant)
Length = 127
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
KKIL+ + L L G TV+ +G+ +++ +R D+ DL
Sbjct: 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR---RDRPDL---------- 52
Query: 1059 ILMDCEMPI-MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+++ ++ NGY K+++++ V I II + G + ++A D + KP
Sbjct: 53 VVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII---GNPDGFAQHRKLKAHADEAVAKP 109
Query: 1118 LNRDHLME 1125
++ D L+E
Sbjct: 110 VDADQLVE 117
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 30.0 bits (66), Expect = 8.1, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 23/129 (17%)
Query: 1003 VADDSMMLRRVAEINLRHLGATVEACENGEAALQL---VRSGLNDQRDLGAPHILPYDYI 1059
+ DD +R+ L G V+ ++ EA L VR+G+ +
Sbjct: 8 IVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGV----------------L 51
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
+ MP M+G E R + + +++IP I +T H A + ++AG + KP
Sbjct: 52 VTXLRMPDMSGVELLRNLGDL----KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFE 107
Query: 1120 RDHLMEAIK 1128
++EAI+
Sbjct: 108 DTVIIEAIE 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,959,664
Number of Sequences: 62578
Number of extensions: 1185795
Number of successful extensions: 3013
Number of sequences better than 100.0: 149
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 2823
Number of HSP's gapped (non-prelim): 161
length of query: 1131
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1022
effective length of database: 8,152,335
effective search space: 8331686370
effective search space used: 8331686370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)