BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042553
(1131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22267|CKI1_ARATH Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1
Length = 1122
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/1155 (42%), Positives = 688/1155 (59%), Gaps = 103/1155 (8%)
Query: 3 ALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISS-SATNLA 61
A V++ I W T+++ ++VA + L +++ S+IE+I + ++ S LA
Sbjct: 21 AFLVVVFECIWISNWRTTTENLVKEVASFTEDLRTSLVSEIENIGKFTYAKTNLSTIGLA 80
Query: 62 RVISSSLNNGTELSFSEIETKI-----------------SYIGLDGLFISYYVDGNQTLA 104
RVI S + N + F+EI+T+I SYI DGL SY + N ++A
Sbjct: 81 RVIDSYITN-NDTGFTEIQTQIAPLLFVAYSTILQVSQVSYISRDGLMFSYIAESNTSVA 139
Query: 105 LYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNST 164
+++NSS + ++G YTWY Q VD+ TG+L G + ++ V+ + WF A ++
Sbjct: 140 VFANSSSNS-------SRGDYTWYTQTVDQLTGRLNGNSTKSQSLDVTHTDWFQAAQSNN 192
Query: 165 DGLGSLGTGWS-KARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATN 223
+GT + + L + + +G VSLGFPVK +T + +NL+G L + T
Sbjct: 193 YTTAFVGTSLGGEDNETLIQSVVSLYSKKGLVSLGFPVKTLTEVLNSLNLHGEELYMWTK 252
Query: 224 DGKVLV-QGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYK 282
DG VLV +G N I N SI F +N+ Q P +C+S + I ++ Y+
Sbjct: 253 DGTVLVREGSLNDSFFISNGSICFGRESNS--LWSQCIPE---NCSSSGYEVEIKRLRYQ 307
Query: 283 AYCSQFEVAGVKSVYALAMPRKGLVSLV-HRTSKRALILLIVMTVGVLISMLTFVFKSAR 341
A+CS EV+GV Y L P KG + + H+ K L++VM + FV+ +
Sbjct: 308 AFCSVIEVSGVPLRYTLMFPNKGGATRIKHQAEKAKYQLIVVMIFLGFGWPVWFVWFMMQ 367
Query: 342 AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
A R+EMH+ A+LI QMEATQQAERKSMNKS AFANASHDIR ALAG+ GLI++C P
Sbjct: 368 ATRREMHMRATLINQMEATQQAERKSMNKSQAFANASHDIRGALAGMKGLIDICRDGVKP 427
Query: 402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
GS+++T L Q+NVCA DL+ LLNS+LD SK+E+GKMQL+EEDF++ +LLEDV+D +HPVA
Sbjct: 428 GSDVDTTLNQVNVCAKDLVALLNSVLDMSKIESGKMQLVEEDFNLSKLLEDVIDFYHPVA 487
Query: 462 MRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
M+KGV+VVLDP DGSV KFS V+GD +LKQIL+NL+SNAVKFT +GHI+VRA ++P +
Sbjct: 488 MKKGVDVVLDPHDGSVFKFSNVRGDSGRLKQILNNLVSNAVKFTVDGHIAVRAWAQRPGS 547
Query: 522 IGNPSLSSSRHGFLQSISCLFYKNKKARG--DLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
+ L+S G + + +F KNK+ + E N+ + + N MEF FEVDDTGKGIP
Sbjct: 548 NSSVVLASYPKGVSKFVKSMFCKNKEESSTYETEISNSIRNNANTMEFVFEVDDTGKGIP 607
Query: 580 KEKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
E RK+VFENYVQV+E G GTGLGLGIVQSLVRLMGG+I I DK GE+GTCF+FNV
Sbjct: 608 MEMRKSVFENYVQVRETAQGHQGTGLGLGIVQSLVRLMGGEIRITDKAMGEKGTCFQFNV 667
Query: 637 FLAIREA-SANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAP-SPSLSIRTNSPRL-NI 693
L E+ +D + E E AGGD + ++ LT+ S++IR SPR N
Sbjct: 668 LLTTLESPPVSDMKVRQEIE-AGGDYVS----TPNLGLTINTSLGGSMNIRNLSPRFNNC 722
Query: 694 LSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIH 753
LS + EGS VVLL+ NEERRR+ +K+++NLGI V+ V +WE L L+RL FG
Sbjct: 723 LSSSPKQEGSRVVLLLKNEERRRVTEKYIKNLGIKVTVVEKWEHLSYALERL---FG--F 777
Query: 754 SPHSSLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGA--PSFILLVIDATAG 811
SP SS+G+++ S S +E+P M+G + + Q KRR + +LLVIDA G
Sbjct: 778 SPQSSMGRAECSLSCPSS----RELPFIGMDGIDSRSQLPKRRSISFSAVVLLVIDAKTG 833
Query: 812 PFLELFNIVAEFRRDLQ--CNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSR 869
PF EL +IV +FRR L +CKVVWL++ ++R + D +P HGSR
Sbjct: 834 PFFELCDIVKQFRRGLPHGISCKVVWLNESSTR----------VSERGDISCSRPLHGSR 883
Query: 870 LYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEH 929
L +V+K+LPEFGG K + + S +H + +S +H++QEEG SS +
Sbjct: 884 LMEVLKMLPEFGGTVLK---EPPTELQRESLLRHSFVAERS----PKHKVQEEGPSSMFN 936
Query: 930 SR--RDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDG 987
+ + IM + +T S R+ I GN +E++
Sbjct: 937 KKLGKRIMASTDSESETRVKSVRTGRKPI----------GNPE------------DEQET 974
Query: 988 ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQR 1046
+ + LRGK++LV DD+ + R+VA L+ +G + VE C++G+ AL+LV GL +
Sbjct: 975 SKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQRE 1034
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG-EEADKT 1105
+ G+ LP+DYI MDC+MP M+GYEATR+IR+ EK V PIIA++ H G EEA +T
Sbjct: 1035 EQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARET 1094
Query: 1106 IEAGMDVHLGKPLNR 1120
I+AGMD L K LN+
Sbjct: 1095 IQAGMDAFLDKSLNQ 1109
>sp|Q9SXL4|AHK1_ARATH Histidine kinase 1 OS=Arabidopsis thaliana GN=AHK1 PE=1 SV=2
Length = 1207
Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 250/885 (28%), Positives = 398/885 (44%), Gaps = 170/885 (19%)
Query: 296 VYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIK 355
V + +PRK ++ V + + LI+LI +V + + KEM L A LI+
Sbjct: 425 VGVVIIPRKFIMGKVDERAFKTLIILISASVCIFFIGCVCILILTNGVSKEMKLRAELIR 484
Query: 356 QMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVC 415
Q++A ++AE S KS AN SH++R +A + GL+++ + +E + Q+ C
Sbjct: 485 QLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKC 544
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
+ LL LLN+ILD SKVE+GK+ L E +FD+G LE +VD+F + VE VLD SD
Sbjct: 545 STALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDD 604
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNP-SLSSSRHGF 534
+ V+GD +L QI +NL+SN++KFT+ GHI +R + +++ + S+S R
Sbjct: 605 MP---ALVRGDSARLVQIFANLISNSIKFTTTGHIILRGWCENINSLHDEMSVSVDRR-- 659
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ-- 592
+ + + K + R L+ + ++ N M FEVDDTG GI K +VFE++ Q
Sbjct: 660 -KPWAPMKTKQVQHRNHLQ---KSCKNANKMVLWFEVDDTGCGIDPSKWDSVFESFEQAD 715
Query: 593 --VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNT 650
GGTGLGL IV++LV MGG+I++V K NG GT R ++L + D N
Sbjct: 716 PSTTRTHGGTGLGLCIVRNLVNKMGGEIKVVQK-NG-LGTLMR--LYLILSTPDTVDQNI 771
Query: 651 QGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIA 710
Q P G V+L +
Sbjct: 772 Q--------------------------------------------PDFSKYGLVVMLSMY 787
Query: 711 NEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDS 770
R I K++ GI S W L ++ L +S S SD
Sbjct: 788 GSTARMITSKWLRKHGIATVEASDWNELTQIIRDLLETGSRDNSFDSQHNISD------- 840
Query: 771 ESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILL----VIDATAGPFLELFNIVAEFRRD 826
PL A +L P F+++ V+D T + E N + F
Sbjct: 841 --------PLRA------ELSNIVEIKNPVFVIVVDIGVLDLTTNIWKEQLNYLDRFSN- 885
Query: 827 LQCNCKVVWLDK-PTSRSINFDGLEDETMDPNDDVLL--KPFHGSRLYKVIKLLPEFGGV 883
K WL K TS ++ + + V++ KP + +++ ++++ + +
Sbjct: 886 ---KAKFAWLLKHDTSNTVKTE------LRRKGHVMMVNKPLYKAKMIQILEAV-----I 931
Query: 884 QSKRHGKAS--RDAGSSSYSKH------PYR-----TGKSRSKAGRHEIQEEGSSSSEHS 930
++++ G + R+ G+ S H P + + S +G ++ + S+ HS
Sbjct: 932 KNRKRGLCNDLRNRGNGSDESHDCLEIDPTQFDTCSSDDSSETSGEKQVDKSVKPSTLHS 991
Query: 931 RRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGER- 989
++ N + T N +S ++ EE+ +R
Sbjct: 992 ------------------------PVLKNYLIDATTSNDDSTSASMTQKNPEEEDWKDRL 1027
Query: 990 -------SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQ-LVRSG 1041
+ QK L G +IL+A+D+ +L+RVA I L +GATV A +G+ A+ L
Sbjct: 1028 YSGIALDGKNQKSLEGIRILLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYKS 1087
Query: 1042 LNDQ-------------------RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK 1082
+N Q R+ + PYD ILMDC+MP M+GYEAT+ IR E
Sbjct: 1088 INAQAPTEEHKSFEEETANKVTTRETSLRNSSPYDLILMDCQMPKMDGYEATKAIRRAEI 1147
Query: 1083 RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++HIPI+ALTAH + K +E GMD +L KP++R ++ I
Sbjct: 1148 GTELHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTI 1192
>sp|P0C0F6|RPFC_XANCP Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rpfC PE=1 SV=2
Length = 726
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 135/300 (45%), Gaps = 59/300 (19%)
Query: 352 SLIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR 410
SL++ M A ++A + KS AN SH+ R L G++G+ E+ + E L
Sbjct: 170 SLLRAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTRLDAEQKEC-LN 228
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA----MRKGV 466
+ A LL L+ +LD S +EAGK+++ DF + E++ V + P A + G
Sbjct: 229 TIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQPQARGRRLEYGT 288
Query: 467 EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPS 526
+V D D +KGD L+Q+L NL+ NAVKFT GH+ +R SA
Sbjct: 289 QVADDVPD-------LLKGDTAHLRQVLLNLVGNAVKFTEHGHVLLRVTRVSGSA----- 336
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTV 586
E+A+ F+V+DTG G+P + R +
Sbjct: 337 -----------------------------------EDAVRLRFDVEDTGIGVPMDMRPRL 361
Query: 587 FENYVQVKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
FE + Q G GTGLG I + LV MGG I KEN G+ F F + +AI E
Sbjct: 362 FEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGF--KENQPSGSVFWFELPMAIGE 419
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+R ++LVADD R V + L G V C NG ++ L A
Sbjct: 459 VRSMRMLVADDHEANRMVLQRLLEKAGHKV-LCVNGA------------EQVLDAMAEED 505
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD +++D MP MNG + +++R + + P++ L+A ++ E +AG L
Sbjct: 506 YDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLA 565
Query: 1116 KPLNRDHLMEAIKYL 1130
KP+ L++ + L
Sbjct: 566 KPVVAAKLLDTLADL 580
>sp|P0C0F7|RPFC_XANC8 Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain 8004) GN=rpfC PE=3 SV=2
Length = 726
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 135/300 (45%), Gaps = 59/300 (19%)
Query: 352 SLIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLR 410
SL++ M A ++A + KS AN SH+ R L G++G+ E+ + E L
Sbjct: 170 SLLRAMTRAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTRLDAEQKEC-LN 228
Query: 411 QMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA----MRKGV 466
+ A LL L+ +LD S +EAGK+++ DF + E++ V + P A + G
Sbjct: 229 TIQASARSLLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQPQARGRRLEYGT 288
Query: 467 EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPS 526
+V D D +KGD L+Q+L NL+ NAVKFT GH+ +R SA
Sbjct: 289 QVADDVPD-------LLKGDTAHLRQVLLNLVGNAVKFTEHGHVLLRVTRVSGSA----- 336
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTV 586
E+A+ F+V+DTG G+P + R +
Sbjct: 337 -----------------------------------EDAVRLRFDVEDTGIGVPMDMRPRL 361
Query: 587 FENYVQVKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
FE + Q G GTGLG I + LV MGG I KEN G+ F F + +AI E
Sbjct: 362 FEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGF--KENQPSGSVFWFELPMAIGE 419
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
+R ++LVADD R V + L G V C NG ++ L A
Sbjct: 459 VRSMRMLVADDHEANRMVLQRLLEKAGHKV-LCVNGA------------EQVLDAMAEED 505
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD +++D MP MNG + +++R + + P++ L+A ++ E +AG L
Sbjct: 506 YDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLA 565
Query: 1116 KPLNRDHLMEAIKYL 1130
KP+ L++ + L
Sbjct: 566 KPVLAAKLLDTLADL 580
>sp|Q9C5U0|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1
Length = 1080
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 167/361 (46%), Gaps = 43/361 (11%)
Query: 309 LVHRTSKRALILLIVMTVGVLISMLTFV--FKSARAARKEMHLCASLIKQMEATQQAERK 366
++ R ++A I L V+T L + F+ + AA + + + E +AE
Sbjct: 410 MICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAA 469
Query: 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM----NVCANDLLGL 422
+ KS A SH+IR + GI G++ + +EL + R VC L+ L
Sbjct: 470 DVAKSQFLATVSHEIRTPMNGILGMLAMLL-----DTELSSTQRDYAQTAQVCGKALIAL 524
Query: 423 LNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSK 482
+N +LD +K+EAGK++L FD+ +L+DV+ LF + K +E+ + SD
Sbjct: 525 INEVLDRAKIEAGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVP---EI 581
Query: 483 VKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS------------AIGNPSLSSS 530
VKGD + +QI+ NL+ N+VKFT +GHI V+ + + S + + S
Sbjct: 582 VKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVS 641
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAM-EFTF--------EVDDTGKGIPKE 581
+ ++S Y+ R ++ +E ++ EF ++DTG GIP
Sbjct: 642 KQSSYNTLSG--YEAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLV 699
Query: 582 KRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
+ VF ++Q GGTG+GL I + LV LM G I + + + G+ F F
Sbjct: 700 AQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPH--IGSTFWFTAV 757
Query: 638 L 638
L
Sbjct: 758 L 758
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 24/179 (13%)
Query: 961 SVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKP------LRGKKILVADDSMMLRRVA 1014
+V++K +S G+ + E+ + + + P L GKKILV DD+++ RRVA
Sbjct: 901 TVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVNRRVA 960
Query: 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074
L+ GA V E+G+ AL L L PH +D MD +MP M+G+EAT
Sbjct: 961 AGALKKFGAEVVCAESGQVALGL----------LQIPHT--FDACFMDIQMPQMDGFEAT 1008
Query: 1075 RKIREEEKRN------QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
R+IR EK + H+PI+A+TA + ++ +++GMD ++ KP ++L +++
Sbjct: 1009 RQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSV 1067
>sp|Q9C5U1|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1
Length = 1036
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 171/364 (46%), Gaps = 29/364 (7%)
Query: 319 ILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQM-EATQQAERKSMNKSLAFANA 377
+L +V + G+L+ L V A +H +M + ++AE + KS A
Sbjct: 400 VLSMVTSFGILVIAL-LVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATV 458
Query: 378 SHDIRAALAGITGLIELCYVEAGPGSELETN----LRQMNVCANDLLGLLNSILDTSKVE 433
SH+IR + G+ G++ + +EL+ +R L+ L+N +LD +K+E
Sbjct: 459 SHEIRTPMNGVLGMLHMLM-----DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIE 513
Query: 434 AGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQI 493
+GK++L E FD+ +L+DV+ LF + +KGVE+ + SD + GD + +QI
Sbjct: 514 SGKLELEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYISDRVP---DMLIGDPGRFRQI 570
Query: 494 LSNLLSNAVKFTSEGHI--SVRACVKKPSAIGNPSLS---SSRHGFLQSISCLFYKNKKA 548
L+NL+ N++KFT +GHI +V + +I + S S+ G + ++N KA
Sbjct: 571 LTNLMGNSIKFTEKGHIFVTVHLVDELFESIDGETASSPESTLSGLPVADRQRSWENFKA 630
Query: 549 RGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV----KEGEGGTGLGL 604
+ + + V+DTG GIP E + +F ++QV GGTG+GL
Sbjct: 631 FSS-NGHRSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTPFMQVGPSISRTHGGTGIGL 689
Query: 605 GIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA---NDNNTQGEKELAGGDS 661
I + LV LM G+I + G+ F F + A NDNN E G +
Sbjct: 690 SISKCLVGLMKGEIGF--SSTPKVGSTFTFTAVFSNGMQPAERKNDNNQPIFSEFRGMKA 747
Query: 662 AAGD 665
D
Sbjct: 748 VVVD 751
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 30/150 (20%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
L G+KIL+ DD+ + RVA L+ GA V E+G A+ L++ PH
Sbjct: 887 LLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESGIKAISLLK----------PPH--E 934
Query: 1056 YDYILMDCEMPIMNGYEATRKIR--EEEKRNQV----------------HIPIIALTAHI 1097
+D MD +MP M+G+EATR+IR EEE ++ H+P++A+TA +
Sbjct: 935 FDACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVENGNKTSWHLPVLAMTADV 994
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ ++ GMD ++ KP + L +
Sbjct: 995 IQATHEECLKCGMDGYVSKPFEAEQLYREV 1024
>sp|O14002|MAK2_SCHPO Peroxide stress-activated histidine kinase mak2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mak2 PE=3 SV=1
Length = 2310
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 156/314 (49%), Gaps = 66/314 (21%)
Query: 337 FKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY 396
FK A+K + +C + + EA + A K+ AN SH++R + G++ L
Sbjct: 1721 FKEDANAKKWIVVCIDINDEKEAREAAMHAVNLKTNFLANMSHELRTPFSSFYGMLSLL- 1779
Query: 397 VEAGPGSELETNLRQMNVCAN------DLLGLLNSILDTSKVEAGKMQLIEED--FDVGE 448
S+ + N Q ++ + L+ +++ +L+ S++++GKM+L E D FDV E
Sbjct: 1780 ------SDTKLNEEQYDIVSTAKQSCTSLVQIIDDLLNFSELKSGKMKL-EPDKVFDVEE 1832
Query: 449 LLEDVVDLFHPVAMRKGVEVVLD--PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS 506
+ D ++L +P K V++ D P+ ++L GD KL+Q+++NLL N+VKFT+
Sbjct: 1833 NIADCIELVYPSLSSKPVQISYDIYPNVPALLA-----GDSAKLRQVITNLLGNSVKFTT 1887
Query: 507 EGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAME 566
EGHI +R C+ AI E +NA +EN +
Sbjct: 1888 EGHILLR-CM----AID-----------------------------EEINA---EENQCK 1910
Query: 567 FTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVD 622
FE++DTG G+ +E+ K +F + QV GG+GLGL I + ++M GDI V
Sbjct: 1911 LRFEIEDTGIGLKEEQLKLLFNPFTQVDGSTTRIYGGSGLGLSICLQICKIMDGDIG-VQ 1969
Query: 623 KENGERGTCFRFNV 636
GE G+ F F+V
Sbjct: 1970 SVYGE-GSTFWFHV 1982
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 12/141 (8%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
S+ ++ L+ K L+A+D+++ R++ L +LG V A +G ++LV+ + + + G
Sbjct: 2170 SEEKEILQKKYALIAEDNLIARKLLTKQLSNLGFQVHAAVDG---VELVK--MYEAKQFG 2224
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVH--IPIIALTAHISGEEADKTIE 1107
Y I D MPI +G EA IR E+ N IP+IALTA I + +E
Sbjct: 2225 F-----YSVIFADYHMPIRDGAEAVMDIRAYERENNCSTPIPVIALTADIQKSAKQRCLE 2279
Query: 1108 AGMDVHLGKPLNRDHLMEAIK 1128
GM+ +L KP + L+ A++
Sbjct: 2280 VGMNFYLTKPFTQKQLVNAVR 2300
>sp|Q54YZ9|DHKJ_DICDI Hybrid signal transduction histidine kinase J OS=Dictyostelium
discoideum GN=dhkJ PE=3 SV=2
Length = 2062
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 139/292 (47%), Gaps = 52/292 (17%)
Query: 348 HLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELET 407
+L + +K A + AE S KS AN SH+IR + GI G+ +L ++ +E
Sbjct: 1325 NLKETTLKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLT-LDTELTAEQRE 1383
Query: 408 NLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE 467
L + A LL ++N ILD SK+EAG+++L + +F + L D + A +K +E
Sbjct: 1384 YLSMVQSSAGSLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIE 1443
Query: 468 VVLD-PSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPS 526
+V D SD + GD +L+QI++NL+ NA+KFTS+G + + V+K
Sbjct: 1444 LVCDIASDVP----DSLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVEK-------- 1491
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTV 586
S+SC + F V DTG GIPK+K +
Sbjct: 1492 ----------SLSC----------------------GEVVLKFSVIDTGIGIPKDKLHLI 1519
Query: 587 FENYVQ----VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
FE + Q + GGTGLGL I LV LM G + +V K +G+ F F
Sbjct: 1520 FEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSG--KGSTFEF 1569
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 14/131 (10%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
IL+A+D+ + +R+A L G V+ ENG LQ V S + +D IL
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENG---LQAVAS----------SQLRKFDLIL 1777
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
MD +MP G+EAT +IR+ E +H PIIA+TAH + K +EAGMD ++ KP+N
Sbjct: 1778 MDVQMPHCGGFEATAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINP 1837
Query: 1121 DHLMEAI-KYL 1130
D L I KYL
Sbjct: 1838 DQLKAMIEKYL 1848
>sp|Q869S5|DOKA_DICDI Hybrid signal transduction protein dokA OS=Dictyostelium discoideum
GN=dokA PE=1 SV=1
Length = 1671
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 157/342 (45%), Gaps = 65/342 (19%)
Query: 310 VHRTSKRALILLI-VMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSM 368
+H++ KR +L+ M G +TFVF +R + EM +EAT+
Sbjct: 997 IHKSGKRVPVLITSAMIDGSTEQCITFVFDLSRYRQAEM-------AAIEATRL------ 1043
Query: 369 NKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILD 428
K+ N SH++R GI G+ +L +++ + N+ + + L+ L+N ILD
Sbjct: 1044 -KTQFITNISHELRTPCHGIVGMSQLL-LDSQLTNTQRDNIDSIKRSTDSLISLINDILD 1101
Query: 429 TSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRV 488
SK+E GK+ L E F++ ++E+V+D A RKG++++ + + GDR
Sbjct: 1102 FSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKGIDLIFVMGRDYPVP-PVIFGDRN 1160
Query: 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKA 548
LK++L NL+ NAVKFT G + + S
Sbjct: 1161 SLKKVLLNLVGNAVKFTETGFVLLEISTDYESG--------------------------- 1193
Query: 549 RGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV----KEGEGGTGLGL 604
D+ ++ FT V D+G GIP+ K + +F + Q+ GG+GLGL
Sbjct: 1194 ------------DQISLRFT--VKDSGIGIPENKIEQIFVPFGQIDGSFSRKYGGSGLGL 1239
Query: 605 GIVQSLVRLMGGDIEIV--DKENGERGTCFRFNVFLAIREAS 644
+ LV LMGG I + D+E G +GT F F + ++I S
Sbjct: 1240 SFCKELVALMGGYIRVESGDQEGG-KGTTFWFAIKVSISSPS 1280
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 17/129 (13%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
K ILVA+D+ + +V L LG T NG AL+++ S P
Sbjct: 1518 KYILVAEDNDINIKVVVRQLEKLGYTAIVGINGLKALEIIGS-------------FPICL 1564
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118
IL+DC+MP M+G+ + +R+ E Q IPIIA+TA+ + D+ E GMD +L KP+
Sbjct: 1565 ILLDCQMPQMDGFTCSTILRQIEPTGQ-RIPIIAMTAN---DSKDRCFEVGMDDYLSKPV 1620
Query: 1119 NRDHLMEAI 1127
D L + +
Sbjct: 1621 RVDRLQKTL 1629
>sp|Q8D5Z6|LUXQ_VIBVU Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio vulnificus
(strain CMCP6) GN=luxQ PE=3 SV=1
Length = 857
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 130/272 (47%), Gaps = 60/272 (22%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE+ + ++ A SH+IR L GI G+ +L NL+Q++V N
Sbjct: 473 ARREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSVNDAE----NLKQVDVLCNS 528
Query: 419 ---LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD---P 472
LL +LN ILD SK+E GK + + DF+ + L + +++ P+ KGV + P
Sbjct: 529 GEHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQIP 588
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
D ++ D+V+L QI+ NL+SNAVKFT G I V ++K + S H
Sbjct: 589 LD------CQLHTDQVRLNQIMFNLISNAVKFTPAGRIEVSFKLEK--------FARSEH 634
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
L + +V DTG GI + K +++FE +VQ
Sbjct: 635 SIL--------------------------------SIQVSDTGIGIDESKLESIFEPFVQ 662
Query: 593 VK----EGEGGTGLGLGIVQSLVRLMGGDIEI 620
GG+GLGL IV++LV ++ G+I +
Sbjct: 663 ADSLSTREYGGSGLGLTIVKNLVEMLEGEISV 694
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 972 EGSSRYKQTEIEEEDGERSQAQKPL---------RGKKILVADDSMMLRRVAEINLRHLG 1022
+GS+ Y +E+ GE + + P +G K+L+ +D+ + + +
Sbjct: 700 KGSTFYLSIPVEK--GECEEQKTPTNPKPEQLFGQGLKVLLVEDNHTNAFILKAFCQKYQ 757
Query: 1023 ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK 1082
+VE ++G AL+ ++ +D ILMD ++P M G EATR+IRE K
Sbjct: 758 MSVEWVQDGTQALEKLKEH-------------AFDLILMDNQLPKMGGIEATREIRETLK 804
Query: 1083 RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+ PI A TA + + AG + + KP+ L + + +
Sbjct: 805 ---LGTPIYACTADAQESTKQEFLSAGANRVIVKPIKEQELHDELLHF 849
>sp|P0AEC5|BARA_ECOLI Signal transduction histidine-protein kinase BarA OS=Escherichia
coli (strain K12) GN=barA PE=1 SV=1
Length = 918
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 138/286 (48%), Gaps = 55/286 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY-VEAGPGSELETNLRQMNVCAN 417
A ++A+ + KS AN SH++R L G+ G L E P +L + AN
Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR--DHLNTIERSAN 339
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDGS 476
+LL ++N +LD SK+EAGK+ L F + L++VV L + KG+E+ L+ SD
Sbjct: 340 NLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVP 399
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD ++L+QI++NL+ NA+KFT G+I + + +LS+++
Sbjct: 400 ----DNVIGDPLRLQQIITNLVGNAIKFTENGNIDI--------LVEKRALSNTK----- 442
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++ ++ DTG GIP+ + +F+ + Q
Sbjct: 443 ----------------------------VQIEVQIRDTGIGIPERDQSRLFQAFRQADAS 474
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ GGTGLGL I Q LV MGGDI + N RG+ F F++ L
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPN--RGSTFWFHINL 518
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 22/114 (19%)
Query: 1017 NLRHLGAT-------VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN 1069
NL+ +GA VE C++G A++ + +P+D ILMD +MP M+
Sbjct: 679 NLKLIGALLEDMVQHVELCDSGHQAVERAKQ-------------MPFDLILMDIQMPDMD 725
Query: 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHL 1123
G A I + + Q P+IA+TAH + +K + AGM +L KP+ + L
Sbjct: 726 GIRACELIHQLPHQQQT--PVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>sp|P0AEC6|BARA_ECOL6 Signal transduction histidine-protein kinase BarA OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=barA
PE=1 SV=1
Length = 918
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 138/286 (48%), Gaps = 55/286 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY-VEAGPGSELETNLRQMNVCAN 417
A ++A+ + KS AN SH++R L G+ G L E P +L + AN
Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR--DHLNTIERSAN 339
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDGS 476
+LL ++N +LD SK+EAGK+ L F + L++VV L + KG+E+ L+ SD
Sbjct: 340 NLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVP 399
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD ++L+QI++NL+ NA+KFT G+I + + +LS+++
Sbjct: 400 ----DNVIGDPLRLQQIITNLVGNAIKFTENGNIDI--------LVEKRALSNTK----- 442
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++ ++ DTG GIP+ + +F+ + Q
Sbjct: 443 ----------------------------VQIEVQIRDTGIGIPERDQSRLFQAFRQADAS 474
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ GGTGLGL I Q LV MGGDI + N RG+ F F++ L
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPN--RGSTFWFHINL 518
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 22/114 (19%)
Query: 1017 NLRHLGAT-------VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN 1069
NL+ +GA VE C++G A++ + +P+D ILMD +MP M+
Sbjct: 679 NLKLIGALLEDMVQHVELCDSGHQAVERAKQ-------------MPFDLILMDIQMPDMD 725
Query: 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHL 1123
G A I + + Q P+IA+TAH + +K + AGM +L KP+ + L
Sbjct: 726 GIRACELIHQLPHQQQT--PVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>sp|P0AEC7|BARA_ECO57 Signal transduction histidine-protein kinase BarA OS=Escherichia
coli O157:H7 GN=barA PE=3 SV=1
Length = 918
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 138/286 (48%), Gaps = 55/286 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY-VEAGPGSELETNLRQMNVCAN 417
A ++A+ + KS AN SH++R L G+ G L E P +L + AN
Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR--DHLNTIERSAN 339
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDGS 476
+LL ++N +LD SK+EAGK+ L F + L++VV L + KG+E+ L+ SD
Sbjct: 340 NLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVP 399
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD ++L+QI++NL+ NA+KFT G+I + + +LS+++
Sbjct: 400 ----DNVIGDPLRLQQIITNLVGNAIKFTENGNIDI--------LVEKRALSNTK----- 442
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++ ++ DTG GIP+ + +F+ + Q
Sbjct: 443 ----------------------------VQIEVQIRDTGIGIPERDQSRLFQAFRQADAS 474
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ GGTGLGL I Q LV MGGDI + N RG+ F F++ L
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPN--RGSTFWFHINL 518
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 22/114 (19%)
Query: 1017 NLRHLGAT-------VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN 1069
NL+ +GA VE C++G A++ + +P+D ILMD +MP M+
Sbjct: 679 NLKLIGALLEDMVQHVELCDSGHQAVERAKQ-------------MPFDLILMDIQMPDMD 725
Query: 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHL 1123
G A I + + Q P+IA+TAH + +K + AGM +L KP+ + L
Sbjct: 726 GIRACELIHQLPHQQQT--PVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>sp|Q54YH4|DHKB_DICDI Hybrid signal transduction histidine kinase B OS=Dictyostelium
discoideum GN=dhkB PE=1 SV=1
Length = 1969
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 141/301 (46%), Gaps = 61/301 (20%)
Query: 342 AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
RK++ +++ EA +A K + SH++R + G+ ++
Sbjct: 939 TGRKQLMEADYALRKAEAANEA------KVIFLTTVSHELRTPINGVLASADILERTTLD 992
Query: 402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
++ E L + + N LL L+N ILD SK+EAGKM++I+ DF + ++L++ + +
Sbjct: 993 STQKEF-LNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNSIRIVSKNI 1051
Query: 462 MRKGVE--VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
KG++ + +DP+ + V GD+ ++KQIL N LSN++KFT+ G I +R ++
Sbjct: 1052 YEKGLDLCIFIDPNVPVI-----VNGDQRRIKQILLNFLSNSIKFTNHGQIIIRVKLES- 1105
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
S H ++ F+V+D+G GI
Sbjct: 1106 --------DDSTHSLIK--------------------------------FDVEDSGIGIK 1125
Query: 580 KEKRKTVFENYVQVKEGEG----GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
E +F ++ Q+ G GTGLGL I + L ++MGGD+++ K G+ F F
Sbjct: 1126 TEHLNQLFASFSQIDSGNSRKYQGTGLGLSISKRLCKMMGGDVKV--KSEFGVGSTFSFT 1183
Query: 636 V 636
+
Sbjct: 1184 I 1184
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 23/140 (16%)
Query: 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDY 1058
+KIL+ +D+ + ++ L+ G + NG A++ V+ G YD
Sbjct: 1839 EKILLVEDNFVNVKIFSKLLKDSGYIFDVAHNGVEAVECVKKG-------------AYDL 1885
Query: 1059 ILMDCEMPIMNGYEATRKIREEEKRNQV---------HIPIIALTAHISGEEADKTIEAG 1109
ILMDC+MP M+G+EAT IRE EK N + H+ I+ALTA+ ++ K + G
Sbjct: 1886 ILMDCQMPEMDGFEATTAIRELEKSNLIESPPSKKHSHVVIVALTANSGYKDKQKCLSVG 1945
Query: 1110 MDVHLGKPL-NRDHLMEAIK 1128
M+ L KP+ D L++ IK
Sbjct: 1946 MNDFLQKPIKTSDILIQMIK 1965
>sp|P59342|BARA_SHIFL Signal transduction histidine-protein kinase BarA OS=Shigella
flexneri GN=barA PE=3 SV=1
Length = 918
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 138/286 (48%), Gaps = 55/286 (19%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY-VEAGPGSELETNLRQMNVCAN 417
A ++A+ + KS AN SH++R L G+ G L E P +L + AN
Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR--DHLNTIERSAN 339
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDGS 476
+LL ++N +LD SK+EAGK+ L F + L++VV L + KG+E+ L+ SD
Sbjct: 340 NLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVP 399
Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
V GD ++L+QI++NL+ NA+KFT G+I + + +LS+++
Sbjct: 400 ----DNVIGDPLRLQQIITNLVGNAIKFTENGNIDI--------LVEKRALSNTK----- 442
Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ---- 592
++ ++ DTG GIP+ + +F+ + Q
Sbjct: 443 ----------------------------VQIEVQIRDTGIGIPERDQSRLFQAFRQADAS 474
Query: 593 VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ GGTGLGL I Q LV MGGDI + N RG+ F F++ L
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPN--RGSTFWFHINL 518
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 22/114 (19%)
Query: 1017 NLRHLGAT-------VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN 1069
NL+ +GA VE C++G A++ + +P+D ILMD +MP M+
Sbjct: 679 NLKLIGALLEDMVQHVELCDSGHQAVERAKQ-------------MPFDLILMDIQMPDMD 725
Query: 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHL 1123
G A I + + Q P+IA+TAH + +K + AGM +L KP+ + L
Sbjct: 726 GIRACELIHQLPHQRQT--PVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>sp|Q7MD16|LUXQ_VIBVY Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio vulnificus
(strain YJ016) GN=luxQ PE=3 SV=1
Length = 857
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 130/272 (47%), Gaps = 60/272 (22%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE+ + ++ A SH+IR L GI G+ +L NL+Q++V N
Sbjct: 473 ARREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSVNDAE----NLKQVDVLCNS 528
Query: 419 ---LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD---P 472
LL +LN ILD SK+E GK + + DF+ + L + +++ P+ KGV + P
Sbjct: 529 GEHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQIP 588
Query: 473 SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRH 532
D ++ D+V+L QI+ NL+SNAVKFT G I V +++ + S H
Sbjct: 589 LD------CQLHTDQVRLNQIMFNLISNAVKFTPAGRIEVSFKLEQ--------FARSEH 634
Query: 533 GFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592
L + +V DTG GI + K +++FE +VQ
Sbjct: 635 SIL--------------------------------SIQVSDTGIGIDESKLESIFEPFVQ 662
Query: 593 VK----EGEGGTGLGLGIVQSLVRLMGGDIEI 620
GG+GLGL IV++LV ++ G+I +
Sbjct: 663 ADSLSTREYGGSGLGLTIVKNLVEMLEGEISV 694
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 972 EGSSRYKQTEIEEEDGERSQAQKPL---------RGKKILVADDSMMLRRVAEINLRHLG 1022
+GS+ Y +E+ GE + + P +G K+L+ +D+ + + +
Sbjct: 700 KGSTFYLSIPVEK--GECEEQKTPTNPKPEQLFGQGLKVLLVEDNHTNAFILKAFCQKYQ 757
Query: 1023 ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK 1082
+VE ++G AL+ ++ +D ILMD ++P M G EATR+IRE K
Sbjct: 758 MSVEWVQDGTQALEKLKEH-------------AFDLILMDNQLPKMGGIEATREIRETLK 804
Query: 1083 RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130
+ PI A TA + + AG + + KP+ L + + +
Sbjct: 805 ---LGTPIYACTADAQESTKQEFLSAGANRVIVKPIKEQELHDELLHF 849
>sp|Q87GU5|LUXQ_VIBPA Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=luxQ PE=3 SV=1
Length = 858
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 135/282 (47%), Gaps = 58/282 (20%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE+ + ++ A SH+IR + GI G+ +L E E Q++V +
Sbjct: 471 ARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLL----KDSVEAEEQKNQIDVLRHS 526
Query: 419 ---LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS-D 474
LL +LN ILD SK+E GK + + F + + + +++ P+ KGVE+V++ D
Sbjct: 527 GEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENQLD 586
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
G+V F+ D+V+L QIL NL+SNAVKFT G + + A +++ N L
Sbjct: 587 GNVEIFT----DQVRLNQILFNLVSNAVKFTPSGCVRLHAELEQFYGADNSVL------- 635
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ-- 592
E+ DTG GI +K +FE +VQ
Sbjct: 636 ---------------------------------VVEISDTGIGIESDKLDEMFEPFVQEE 662
Query: 593 --VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCF 632
GG+GLGL IV++LV ++ GD+++ + +GT F
Sbjct: 663 ATTTREYGGSGLGLTIVKNLVDMLDGDVQV--RSQKGQGTTF 702
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115
YD ILMD ++P + G E T++IR+ K + PI A TA + E +D +EAG + L
Sbjct: 778 YDLILMDNQLPHLGGIETTKEIRQNLK---LGTPIYACTADTAQETSDAFMEAGANYVLL 834
Query: 1116 KPLNRDHLMEAI 1127
KP+ + L EA
Sbjct: 835 KPIKENALHEAF 846
>sp|P0AEC4|ARCB_SHIFL Aerobic respiration control sensor protein ArcB OS=Shigella
flexneri GN=arcB PE=3 SV=1
Length = 778
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 132/278 (47%), Gaps = 56/278 (20%)
Query: 364 ERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLL 423
ER S +K+ + SH++R L GI GL + ++ +E E L+ ++V A L +
Sbjct: 277 ERASRDKTTFISTISHELRTPLNGIVGLSRIL-LDTELTAEQEKYLKTIHVSAVTLGNIF 335
Query: 424 NSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV 483
N I+D K+E K+QL + D L D+ +L A +KG+ L+P ++ +V
Sbjct: 336 NDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEP---TLPLPHQV 392
Query: 484 KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFY 543
D +L+QIL NL+SNAVKFT +G ++VR
Sbjct: 393 ITDGTRLRQILWNLISNAVKFTQQGQVTVR------------------------------ 422
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG----- 598
+ DE M FEV+D+G GIP+++ +F Y QVK+ G
Sbjct: 423 --------------VRYDEGDM-LHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467
Query: 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GTG+GL + + L + MGGDI + ++ +G+ F +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQG--KGSTFTLTI 503
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 944 TGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSR----YKQTEIEEEDGERSQAQKPLRGK 999
TG G R + N + + G+GS+ + + EE D + PL
Sbjct: 467 TGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPSVAEEVDDAFDEDDMPLPAL 526
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+L+ +D + VA L LG +V+ G+AAL++ + G YD +
Sbjct: 527 NVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPG-------------EYDLV 573
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+D ++P M G + +R++ + R + P++ALTA++ ++ + + AGMD L KPL+
Sbjct: 574 LLDIQLPDMTGLDISRELTKRYPREDLP-PLVALTANVLKDKQE-YLNAGMDDVLSKPLS 631
Query: 1120 RDHLMEAIK 1128
L IK
Sbjct: 632 VPALTAMIK 640
>sp|P0AEC3|ARCB_ECOLI Aerobic respiration control sensor protein ArcB OS=Escherichia coli
(strain K12) GN=arcB PE=1 SV=1
Length = 778
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 132/278 (47%), Gaps = 56/278 (20%)
Query: 364 ERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLL 423
ER S +K+ + SH++R L GI GL + ++ +E E L+ ++V A L +
Sbjct: 277 ERASRDKTTFISTISHELRTPLNGIVGLSRIL-LDTELTAEQEKYLKTIHVSAVTLGNIF 335
Query: 424 NSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV 483
N I+D K+E K+QL + D L D+ +L A +KG+ L+P ++ +V
Sbjct: 336 NDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEP---TLPLPHQV 392
Query: 484 KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFY 543
D +L+QIL NL+SNAVKFT +G ++VR
Sbjct: 393 ITDGTRLRQILWNLISNAVKFTQQGQVTVR------------------------------ 422
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG----- 598
+ DE M FEV+D+G GIP+++ +F Y QVK+ G
Sbjct: 423 --------------VRYDEGDM-LHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467
Query: 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GTG+GL + + L + MGGDI + ++ +G+ F +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQG--KGSTFTLTI 503
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 944 TGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSR----YKQTEIEEEDGERSQAQKPLRGK 999
TG G R + N + + G+GS+ + + EE D + PL
Sbjct: 467 TGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPSVAEEVDDAFDEDDMPLPAL 526
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+L+ +D + VA L LG +V+ G+AAL++ + G YD +
Sbjct: 527 NVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPG-------------EYDLV 573
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+D ++P M G + +R++ + R + P++ALTA++ ++ + + AGMD L KPL+
Sbjct: 574 LLDIQLPDMTGLDISRELTKRYPREDLP-PLVALTANVLKDKQE-YLNAGMDDVLSKPLS 631
Query: 1120 RDHLMEAIK 1128
L IK
Sbjct: 632 VPALTAMIK 640
>sp|P58363|ARCB_ECO57 Aerobic respiration control sensor protein ArcB OS=Escherichia coli
O157:H7 GN=arcB PE=3 SV=1
Length = 778
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 132/278 (47%), Gaps = 56/278 (20%)
Query: 364 ERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLL 423
ER S +K+ + SH++R L GI GL + ++ +E E L+ ++V A L +
Sbjct: 277 ERASRDKTTFISTISHELRTPLNGIVGLSRIL-LDTELTAEQEKYLKTIHVSAVTLGNIF 335
Query: 424 NSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKV 483
N I+D K+E K+QL + D L D+ +L A +KG+ L+P ++ +V
Sbjct: 336 NDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEP---TLPLPHQV 392
Query: 484 KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFY 543
D +L+QIL NL+SNAVKFT +G ++VR
Sbjct: 393 ITDGTRLRQILWNLISNAVKFTQQGQVTVR------------------------------ 422
Query: 544 KNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG----- 598
+ DE M FEV+D+G GIP+++ +F Y QVK+ G
Sbjct: 423 --------------VRYDEGDM-LHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467
Query: 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
GTG+GL + + L + MGGDI + ++ +G+ F +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQG--KGSTFTLTI 503
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 944 TGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSR----YKQTEIEEEDGERSQAQKPLRGK 999
TG G R + N + + G+GS+ + + EE D + PL
Sbjct: 467 TGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPSVAEEVDDAFDEDDMPLPAL 526
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
+L+ +D + VA L LG +V+ G+AAL++ + G YD +
Sbjct: 527 NVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPG-------------EYDLV 573
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+D ++P M G + +R++ + R + P++ALTA++ ++ + + AGMD L KPL+
Sbjct: 574 LLDIQLPDMTGLDISRELTKRYPREDLP-PLVALTANVLKDKQE-YLNAGMDDVLSKPLS 631
Query: 1120 RDHLMEAIK 1128
L IK
Sbjct: 632 VPALTAMIK 640
>sp|Q9HUI3|ARUS_PSEAE Sensor histidine kinase AruS OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=aruS PE=3
SV=1
Length = 998
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 122/290 (42%), Gaps = 59/290 (20%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A QAE KS A SH+IR L GI G+ EL EA G LR +
Sbjct: 496 AKDQAEAADRAKSRFLATMSHEIRTPLNGILGMAELLR-EASLGERDRQRLRALATAGEG 554
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG--VEVVLDPS--D 474
LL +LN +L +++E DF + LLEDV+ L P A +++ LDP D
Sbjct: 555 LLAILNEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVHD 614
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
G +G L+Q+L+NLL NAVKFT G + VR
Sbjct: 615 GH-------RGAEQFLRQVLTNLLGNAVKFTEAGEVRVR--------------------- 646
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ-- 592
V R + V D G GIP+E R+ +FE + Q
Sbjct: 647 --------------------VERLARSAGSERLRLSVADDGIGIPEEMRERIFERFTQGG 686
Query: 593 --VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
V GGTGLGL I + LV +GG I + + +G+ F F + LA+
Sbjct: 687 DAVTRRYGGTGLGLAISKRLVEALGGRIGVESRVG--QGSTFWFEIELAL 734
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI 1059
++L+ +D + R VA+ L G V E+ AL L R QR +D I
Sbjct: 751 EVLLVEDVALNREVAQGLLERDGHRVMLAEDAGPALALCR-----QRR--------FDLI 797
Query: 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLN 1119
L+D +P M G E IR + PI A TA I + + AGM LGKPL
Sbjct: 798 LLDMHLPGMAGLELCAGIRRQLDGLNRATPIFAFTASIQPDMVRRYFAAGMQGVLGKPLR 857
Query: 1120 RDHLMEAI 1127
D L A+
Sbjct: 858 MDELRRAL 865
>sp|Q3S4A7|AHK5_ARATH Histidine kinase 5 OS=Arabidopsis thaliana GN=AHK5 PE=2 SV=1
Length = 922
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 151/306 (49%), Gaps = 45/306 (14%)
Query: 337 FKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY 396
+ A RK M + L K + T++ +M A SH+IR+ L+G+ G+ E+
Sbjct: 340 LREDNAVRKAME--SELNKTIHITEE----TMRAKQMLATMSHEIRSPLSGVVGMAEILS 393
Query: 397 VEAGPGSELETNLRQM---NVCANDL-LGLLNSILDTSKVEAGKMQLIEEDFDVGELLED 452
++L+ RQ+ + + DL L L+N ILD SKVE+G M+L F E+++
Sbjct: 394 T-----TKLDKEQRQLLNVMISSGDLVLQLINDILDLSKVESGVMRLEATKFRPREVVKH 448
Query: 453 VVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISV 512
V+ +++K + + + +D ++ V GD ++++QIL+NL+SNA+KFT EG++ +
Sbjct: 449 VLQT-AAASLKKSLTLEGNIADDVPIE---VVGDVLRIRQILTNLISNAIKFTHEGNVGI 504
Query: 513 RACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVD 572
+ V I PS F ++ D E E ++ +V
Sbjct: 505 KLQV-----ISEPS---------------FVRDNALNADTEEHEQNGLTETSVWICCDVW 544
Query: 573 DTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENGER 628
DTG GIP+ +F+ Y+Q GGTGLGL I + LV LMGG + + + +
Sbjct: 545 DTGIGIPENALPCLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVS--E 602
Query: 629 GTCFRF 634
G+ F F
Sbjct: 603 GSTFTF 608
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 42/176 (23%)
Query: 981 EIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRS 1040
E E+ + E + KP KIL+ +D+ + VA+ ++ LG T++ NG A+ + S
Sbjct: 764 EEEKAETEVKETSKP----KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINS 819
Query: 1041 GLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEK------------------ 1082
YD +LMD MP+++G +ATR IR E+
Sbjct: 820 S-------------SYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSE 866
Query: 1083 ------RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI-KYLH 1131
R +PIIA+TA+ E +++ GMD + KP+ L E + +YLH
Sbjct: 867 NEQVCMRPTNRLPIIAMTANTLAESSEECYANGMDSFISKPVTLQKLRECLQQYLH 922
>sp|P48027|GACS_PSESY Sensor protein GacS OS=Pseudomonas syringae pv. syringae GN=gacS
PE=3 SV=1
Length = 907
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 134/288 (46%), Gaps = 59/288 (20%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETN----LRQMNV 414
A ++A S KS AN SH+IR L GI G L SEL L +
Sbjct: 264 ARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQ-----KSELTPRQFDYLGTIEK 318
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSD 474
A++LL ++N ILD SK+EAGK+ L F++ +LL+D + + P A K +E+V
Sbjct: 319 SADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYR 378
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
+ L S GD ++L+QIL+NL+SNA+KFT EG I RA ++ +
Sbjct: 379 DTPLALS---GDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDET-------------- 421
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ-- 592
E + V DTG G+ + + +F+ + Q
Sbjct: 422 ---------------------------EEHAQLRISVQDTGIGLSSQDVRALFQAFSQAD 454
Query: 593 --VKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+ GGTGLGL I + L+ MGG+I VD GE G+ F ++ L
Sbjct: 455 NSLSRQPGGTGLGLVISKRLIEQMGGEIG-VDSTPGE-GSEFWISLKL 500
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 16/142 (11%)
Query: 989 RSQAQKPL--RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQR 1046
R+ PL R ++L DD+ + + L +GA V A E G AA+ V+
Sbjct: 645 RADIGPPLSSRAPRVLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAVQQE----- 699
Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIRE-EEKRNQVHIPIIALTAHISGEEADKT 1105
+D +LMD +MP M+G +AT IR E +RNQ +PI+ALTAH E
Sbjct: 700 --------AFDLVLMDVQMPGMDGRQATEAIRAWEAERNQSSLPIVALTAHAMANEKRSL 751
Query: 1106 IEAGMDVHLGKPLNRDHLMEAI 1127
+++GMD +L KP++ L + +
Sbjct: 752 LQSGMDDYLTKPISERQLAQVV 773
>sp|P54302|LUXQ_VIBHA Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio harveyi
GN=luxQ PE=1 SV=1
Length = 859
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 140/289 (48%), Gaps = 52/289 (17%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAND 418
A ++AE+ + ++ A SH+IR + GI G+ +L ++ E + + +
Sbjct: 472 ARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLK-DSVDTQEQKNQIDVLCHSGEH 530
Query: 419 LLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS-DGSV 477
LL +LN ILD SK+E GK + + F + + + +++ P+ KGVE+V++ D +V
Sbjct: 531 LLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYRPICTNKGVELVIENELDPNV 590
Query: 478 LKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537
F+ D+V+L QIL NL+SNAVKFT G I + A
Sbjct: 591 EIFT----DQVRLNQILFNLVSNAVKFTPIGSIRLHA----------------------- 623
Query: 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ----V 593
+LE A EN++ E+ DTG GI +K +FE +VQ
Sbjct: 624 -------------ELEQFYGA---ENSV-LVVELTDTGIGIESDKLDQMFEPFVQEESTT 666
Query: 594 KEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIRE 642
GG+GLGL IV++LV ++ GD+++ + G GT F + + RE
Sbjct: 667 TREYGGSGLGLTIVKNLVDMLEGDVQVRSSKGG--GTTFVITLPVKDRE 713
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 988 ERSQAQKPL----RGKKILVADDSMMLRRVAEINLRHLGATV--EACENGEAALQLVRSG 1041
+R + +PL R K + D+S+ +V + H A + C+ + + + G
Sbjct: 711 DRERVLRPLEVSQRIKPEALFDESL---KVLLVEDNHTNAFILQAFCKKYKMQVDWAKDG 767
Query: 1042 LNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEE 1101
L+ L YD ILMD ++P + G E T +IR+ + + PI A TA + E
Sbjct: 768 LDAMELLSDT---TYDLILMDNQLPHLGGIETTHEIRQNLR---LGTPIYACTADTAKET 821
Query: 1102 ADKTIEAGMDVHLGKPLNRDHLMEAI 1127
+D + AG + + KP+ + L EA
Sbjct: 822 SDAFMAAGANYVMLKPIKENALHEAF 847
>sp|Q9C5U2|AHK2_ARATH Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1
Length = 1176
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 148/309 (47%), Gaps = 47/309 (15%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL--RQM 412
K E +AE + KS A SH+IR + G+ G++++ ++T+L +QM
Sbjct: 573 KMRELKARAEAADIAKSQFLATVSHEIRTPMNGVLGMLKML---------MDTDLDAKQM 623
Query: 413 NVC------ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV 466
+ DL L+N +LD +K+E+G+++L FD+ +L++V L A KG+
Sbjct: 624 DYAQTAHGSGKDLTSLINEVLDQAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGI 683
Query: 467 EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVR------------ 513
E+ + S V GD + +QI++NL+ N++KFT E GHI +
Sbjct: 684 ELAVYVSSQVP---DVVVGDPSRFRQIITNLVGNSIKFTQERGHIFISVHLADEVKEPLT 740
Query: 514 ---ACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFE 570
A +K+ A+G + GF + +KN K E+ N+ Q ++
Sbjct: 741 IEDAVLKQRLALGCSESGETVSGFPAVNAWGSWKNFKTCYSTESQNSDQ-----IKLLVT 795
Query: 571 VDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGGDIEIVDKENG 626
V+DTG GIP + + +F ++Q GGTG+GL I + LV LM G++ V +
Sbjct: 796 VEDTGVGIPVDAQGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPG- 854
Query: 627 ERGTCFRFN 635
G+ F F
Sbjct: 855 -IGSTFSFT 862
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 30/150 (20%)
Query: 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILP 1055
LR K+ILV DD+++ RRVAE L+ GA V E+G+AAL +++ PH
Sbjct: 1032 LREKQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLK----------PPH--N 1079
Query: 1056 YDYILMDCEMPIMNGYEATRKIREEE------------------KRNQVHIPIIALTAHI 1097
+D MD +MP M+G+EATR++RE E K + H+PI+A+TA +
Sbjct: 1080 FDACFMDLQMPEMDGFEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVPILAMTADV 1139
Query: 1098 SGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127
++ ++ GMD ++ KP + L A+
Sbjct: 1140 IQATHEECMKCGMDGYVSKPFEEEVLYTAV 1169
>sp|Q54U87|DHKA_DICDI Hybrid signal transduction histidine kinase A OS=Dictyostelium
discoideum GN=dhkA PE=1 SV=1
Length = 2150
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 146/315 (46%), Gaps = 61/315 (19%)
Query: 320 LLIVMTVGVLISMLTFVFKSARAA--------RKEMHLCASLIKQMEATQQAERKSMNKS 371
L I+M V+ + +F S R A RK+M LI + EA ++A + KS
Sbjct: 1335 LYIIMRGKVVSNETSFKDNSLRMAGTLRDMTSRKDMQ---RLILEKEAAEEANKA---KS 1388
Query: 372 LAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSK 431
A SH++R L+G+ G+ +L +E E ++ + + LL ++N ILD SK
Sbjct: 1389 AFVATVSHEVRTPLSGVIGVSDLL-LETNLSEEQRDYVQTIQKSSQALLTIINDILDYSK 1447
Query: 432 VEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-PSDGSVLKFSKVKGDRVKL 490
+E+ ++++ F + E + V+ + VA V+++L P + + F GD +++
Sbjct: 1448 LESRQLKMETLPFSIIETCQAVIHMLS-VAANDDVDILLRVPPNVPRIIF----GDAMRM 1502
Query: 491 KQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARG 550
+Q+L NLLSNA+KFTS GH+ V
Sbjct: 1503 RQVLLNLLSNAIKFTSRGHVLTDISVD--------------------------------- 1529
Query: 551 DLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGI 606
+++ +E + ++DTG GIP+ ++FE + Q GGTGLGL I
Sbjct: 1530 --DSIPPTNTEEEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLSI 1587
Query: 607 VQSLV-RLMGGDIEI 620
+ L+ +MGG I++
Sbjct: 1588 TKRLIEEVMGGTIQV 1602
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 13/136 (9%)
Query: 993 QKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPH 1052
Q P KK L+ +D+ + R+V + + T+ ENG AL+ + +R
Sbjct: 2019 QPPAYRKKALIVEDNELNRKVLAQLFKKIDWTISFAENGREALKEITG----ER------ 2068
Query: 1053 ILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMD 1111
+D + MDC+MP+++G++ T+ IR +E+ N + I+AL+A S +++GMD
Sbjct: 2069 --CFDIVFMDCQMPVLDGFQTTKIIRSKERENNWKRMNIVALSAGSSSSFVQDCLDSGMD 2126
Query: 1112 VHLGKPLNRDHLMEAI 1127
+GKP+ L +A+
Sbjct: 2127 SFMGKPITLATLKDAL 2142
>sp|P14376|RCSC_ECOLI Sensor kinase protein RcsC OS=Escherichia coli (strain K12) GN=rcsC
PE=1 SV=3
Length = 949
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 130/275 (47%), Gaps = 59/275 (21%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E Q AE+ S +KS+ A SH++R L GI G ++L + P ++ + MN ++
Sbjct: 458 EMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKG-VDRLVTAMNNSSS 516
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK--GVEVVLDPSDG 475
LL +++ ILD SK+E+ ++++ +F E++ + + P+ +RK G+ ++P
Sbjct: 517 LLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVP 576
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
L GD ++L+Q++SNLLSNA+KFT G I +
Sbjct: 577 VALN-----GDPMRLQQVISNLLSNAIKFTDTGCIVLHV--------------------- 610
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+A GD + V DTG GIP ++ +F+ + QV
Sbjct: 611 -----------RADGDY--------------LSIRVRDTGVGIPAKEVVRLFDPFFQVGT 645
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENG 626
G GTGLGL I + L+ +M GDI VD E G
Sbjct: 646 GVQRNFQGTGLGLAICEKLISMMDGDIS-VDSEPG 679
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 17/127 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILV DD + RR+ L LG + +G AL + L HI D +L
Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNV----------LSKNHI---DIVL 873
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D MP M+GY T++IR+ + +P+I +TA+ EE + +E+GMD L KP+
Sbjct: 874 SDVNMPNMDGYRLTQRIRQL----GLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 929
Query: 1121 DHLMEAI 1127
D + + +
Sbjct: 930 DVIKQTL 936
>sp|P58662|RCSC_SALTY Sensor protein RcsC OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=rcsC PE=3 SV=1
Length = 948
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 131/275 (47%), Gaps = 59/275 (21%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E Q AE+ S +KS+ A SH++R L GI G ++L + P +E + MN ++
Sbjct: 458 EMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKG-VERLVTAMNNSSS 516
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK--GVEVVLDPSDG 475
LL +++ ILD SK+E+ ++++ +F E++ + + P+ +RK G+ ++P D
Sbjct: 517 LLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEP-DV 575
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
V + GD ++L+Q++SNLLSNA+KFT G I +
Sbjct: 576 PV----SLNGDPMRLQQVISNLLSNAIKFTDIGCIVLHV--------------------- 610
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+ GD + V DTG GIP ++ +F+ + QV
Sbjct: 611 -----------RCDGDY--------------LSIRVRDTGVGIPAKEVVRLFDPFFQVGT 645
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENG 626
G GTGLGL I + L+ +M GDI VD E G
Sbjct: 646 GVQRNFQGTGLGLAICEKLISMMDGDIS-VDSEPG 679
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILV DD + RR+ L LG + +G AL ++ D +L
Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN-------------AIDIVL 873
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D MP M+GY T++IR+ + +P++ +TA+ EE + +E+GMD L KP+
Sbjct: 874 SDVNMPNMDGYRLTQRIRQL----GLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929
Query: 1121 DHLMEAI 1127
D L + +
Sbjct: 930 DVLKQTL 936
>sp|Q86CZ2|DHKK_DICDI Hybrid signal transduction histidine kinase K OS=Dictyostelium
discoideum GN=dhkK PE=1 SV=1
Length = 1213
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 113/453 (24%), Positives = 187/453 (41%), Gaps = 102/453 (22%)
Query: 304 KGLVSLVHRTSKRALI--LLIVMTVGVLISMLTFVFKSARAAR-KEMHLCASLIKQMEAT 360
+G+ S++ R+ +I +I+MT+ + F+ ++ R + K L + +EA
Sbjct: 754 QGIPSIIIRSHMNFIIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQLTIAKDAAIEAY 813
Query: 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLL 420
Q + A SH+IR L G+ G+ L E +T + + C + LL
Sbjct: 814 QARQE-------FLATMSHEIRTPLNGLIGMATLLRDSHNLPPEEKTMAKAVKSCGDILL 866
Query: 421 GLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKF 480
L+N ILD SK+EA +M L F + EL + + + A K + + + SD
Sbjct: 867 RLVNDILDLSKLEANQMGLEHIPFRMRELTQQICHVLSGQANEKNIHLSCEVSDKIP--- 923
Query: 481 SKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISC 540
S + GD ++ QIL NL NA+KFT G++ + + + +
Sbjct: 924 SILLGDSGRILQILMNLTGNALKFTQSGYVKIIIDLIEEES------------------- 964
Query: 541 LFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE--- 597
E V+ + + N +F V DTG G+P E + +FE +VQ +
Sbjct: 965 ------------ELVSLKKGEYN---ISFRVKDTGIGVPVESHQKIFEAFVQADPSDSRK 1009
Query: 598 -GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKEL 656
GG+GLGL + LVRLM G+I + + + + G+ F F L + E +
Sbjct: 1010 YGGSGLGLYLCAKLVRLMKGEIGVYNNPDCD-GSTFWF--ILPLEEGT------------ 1054
Query: 657 AGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEG---SHVVLLIANEE 713
D +Q MN G+RH+ V +LIA +
Sbjct: 1055 --------DQSMQQMN-----------------------NGARHKAFPQDCVKVLIAEDN 1083
Query: 714 --RRRIAQKFMENLGINVSAVSRWERLHSTLKR 744
+R+A KF+E +GI + L+R
Sbjct: 1084 IINQRVAVKFLEKIGIKAEVAGNGNEVLEILER 1116
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 967 GNSSGEGSSRYKQTEIEE---------EDGERSQAQKPLRGKKILVADDSMMLRRVAEIN 1017
N +GS+ + +EE +G R +A P K+L+A+D+++ +RVA
Sbjct: 1035 NNPDCDGSTFWFILPLEEGTDQSMQQMNNGARHKA-FPQDCVKVLIAEDNIINQRVAVKF 1093
Query: 1018 LRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077
L +G E NG L++ L H YD I MD +MPI++G ++ I
Sbjct: 1094 LEKIGIKAEVAGNGNEVLEI----------LERQH---YDLIFMDFQMPILDGLRCSKTI 1140
Query: 1078 REEEKRNQVH-----IPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
RE E+ ++ + I I LTA+ + + + GM+ + KP + L AI+
Sbjct: 1141 REFEQNHKWNRICPSIFICGLTANTMSTDKKRCFDHGMNHFISKPFQLEQLRSAIE 1196
>sp|P40330|BVGS_BORPA Virulence sensor protein BvgS OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=bvgS PE=3 SV=2
Length = 1238
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 126/274 (45%), Gaps = 51/274 (18%)
Query: 351 ASLIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
A L++++ +A + A+ + K+ A SH+IR + I G++EL + ++
Sbjct: 700 AELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEPDRQSI 759
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
+ A LL L+ ILD +K+EAGK L + L E + LF +A +KG+E+V
Sbjct: 760 QVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGLARQKGIELV 819
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
L ++ V D +++KQ+LSNL+ NA+KFT+EG + V +P
Sbjct: 820 L---KTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQV-VLTVTARP---------- 865
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
D A F V DTG GI + ++ +F+
Sbjct: 866 -------------------------------DGEAAHVQFSVSDTGCGISEADQRQLFKP 894
Query: 590 YVQV----KEGEG-GTGLGLGIVQSLVRLMGGDI 618
+ QV + G GTGLGL I + LV LMGG +
Sbjct: 895 FSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTL 928
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 24/139 (17%)
Query: 994 KPLRGKKILVADDS----MMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
KP ++LV DD M+LR+ L +LG V A ++GEAAL L
Sbjct: 968 KPQVSLRVLVVDDHKPNLMLLRQ----QLDYLGQRVVAADSGEAALALW----------- 1012
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKR---NQVHIPIIALTAHISGEEADKTI 1106
H +D ++ DC MP +NGYE R+IR E + + TA +EA +
Sbjct: 1013 --HEHAFDVVITDCNMPGINGYELARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCR 1070
Query: 1107 EAGMDVHLGKPLNRDHLME 1125
AGMD L KP+ D L +
Sbjct: 1071 AAGMDDCLFKPIGVDALRQ 1089
>sp|P16575|BVGS_BORPE Virulence sensor protein BvgS OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=bvgS PE=1 SV=3
Length = 1238
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 132/277 (47%), Gaps = 57/277 (20%)
Query: 351 ASLIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
A L++++ +A + A+ + K+ A SH+IR + I G++EL + ++ E +
Sbjct: 700 AELLRKLHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRP---TDQEPDR 756
Query: 410 RQMNVC---ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGV 466
+ + V A LL L+ ILD +K+EAGK L + L E + +F +A +KG+
Sbjct: 757 QSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLARQKGI 816
Query: 467 EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPS 526
E+VL ++ V D +++KQ+LSNL+ NA+KFT+EG + V A +P
Sbjct: 817 ELVL---KTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQV-VLAVTARP------- 865
Query: 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTV 586
D +A F V DTG GI + ++ +
Sbjct: 866 ----------------------------------DGDAAHVQFSVSDTGCGISEADQRQL 891
Query: 587 FENYVQV----KEGEG-GTGLGLGIVQSLVRLMGGDI 618
F+ + QV + G GTGLGL I + LV LMGG +
Sbjct: 892 FKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTL 928
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 24/139 (17%)
Query: 994 KPLRGKKILVADDS----MMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
KP ++LV DD M+LR+ L +LG V A ++GEAAL L R
Sbjct: 968 KPQVSLRVLVVDDHKPNLMLLRQ----QLDYLGQRVIAADSGEAALALWREH-------- 1015
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKR---NQVHIPIIALTAHISGEEADKTI 1106
+D ++ DC MP ++GYE R+IR E + + TA +EA +
Sbjct: 1016 -----AFDVVITDCNMPGISGYELARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCR 1070
Query: 1107 EAGMDVHLGKPLNRDHLME 1125
AGMD L KP+ D L +
Sbjct: 1071 AAGMDDCLFKPIGVDALRQ 1089
>sp|Q56128|RCSC_SALTI Sensor protein RcsC OS=Salmonella typhi GN=rcsC PE=3 SV=2
Length = 948
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 131/275 (47%), Gaps = 59/275 (21%)
Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
E Q AE+ S +KS+ A SH++R L GI G ++L + P ++ + MN ++
Sbjct: 458 EMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKG-VDRLVTAMNNSSS 516
Query: 418 DLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRK--GVEVVLDPSDG 475
LL +++ ILD SK+E+ ++++ +F E++ + + P+ +RK G+ ++P D
Sbjct: 517 LLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEP-DV 575
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
V + GD ++L+Q++SNLLSNA+KFT G I +
Sbjct: 576 PV----SLNGDPMRLQQVISNLLSNAIKFTDIGCIVLHV--------------------- 610
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595
+ GD + V DTG GIP ++ +F+ + QV
Sbjct: 611 -----------RCDGDY--------------LSIRVRDTGVGIPAKEVVRLFDPFFQVGT 645
Query: 596 GE----GGTGLGLGIVQSLVRLMGGDIEIVDKENG 626
G GTGLGL I + L+ +M GDI VD E G
Sbjct: 646 GVQRNFQGTGLGLAICEKLISMMDGDIS-VDSEPG 679
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060
ILV DD + RR+ L LG + +G AL ++ D +L
Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN-------------AIDIVL 873
Query: 1061 MDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120
D MP M+GY T++IR+ + +P++ +TA+ EE + +E+GMD L KP+
Sbjct: 874 SDVNMPNMDGYRLTQRIRQL----GLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTL 929
Query: 1121 DHLMEAI 1127
D L + +
Sbjct: 930 DALKQTL 936
>sp|Q9KLK7|LUXQ_VIBCH Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=luxQ PE=1 SV=1
Length = 857
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 155/324 (47%), Gaps = 65/324 (20%)
Query: 323 VMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQ-QAERKSMNKSLAFANASHDI 381
+M G +IS++T +++ A KQ +A + +AE + ++ A SH++
Sbjct: 440 IMVEGQIISIIT--------QGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHEL 491
Query: 382 RAALAGITGLIELCYVEAGP-GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLI 440
R L G+ G+ +L ++ P E ++ + LL +LN ILD S++E GK ++
Sbjct: 492 RTPLNGVLGVSQL--LKRTPLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQ 549
Query: 441 EEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSN 500
+ +F + EL+ + ++ P+ KG+E+V+ + ++ + V+ D++++ QIL NLL+N
Sbjct: 550 KNEFRLKELVCAIDRIYRPLCNEKGLELVV---NSNITTAAIVRSDQIRINQILFNLLNN 606
Query: 501 AVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQR 560
A+KFT +G I V LQ I GD A
Sbjct: 607 AIKFTHQGSIRVE---------------------LQLIE----------GDPLA------ 629
Query: 561 DENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGE----GGTGLGLGIVQSLVRLMGG 616
+ +V DTG GI ++ +FE ++Q + GG+GLGL IV SLV ++ G
Sbjct: 630 -----QLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSG 684
Query: 617 DIEIVDKENGERGTCFRFNVFLAI 640
+ + + E G RF + L I
Sbjct: 685 QLHV----SSEYGIGTRFEIQLPI 704
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 994 KPLRGK--KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAP 1051
+PL K ++L+ +D+ +A+ R G V +G A++ ++
Sbjct: 723 QPLFDKTLRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELK------------ 770
Query: 1052 HILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT--IEAG 1109
I YD +LMD ++P ++G E TR I++ +H+P++ G E + AG
Sbjct: 771 -IHDYDLVLMDNQLPYLDGVETTRTIKK-----VLHLPVVVYACTADGLEETRQAFFHAG 824
Query: 1110 MDVHLGKPLNRDHLMEAIKYL 1130
+ L KPL L +A+++
Sbjct: 825 AEYVLVKPLKEQTLHKALEHF 845
>sp|P58356|TORS_ECO57 Sensor protein TorS OS=Escherichia coli O157:H7 GN=torS PE=3 SV=1
Length = 914
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 134/295 (45%), Gaps = 56/295 (18%)
Query: 353 LIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM 412
+I+ +A +AE+ S KS A SH+IR L GI G +L ++ + +LR +
Sbjct: 427 VIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRD-DLRAI 485
Query: 413 NVCANDLLGLLNSILDTSKVEAG--KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
LL +LN ILD S +EAG + + +E F+ LLE + L + + +
Sbjct: 486 TDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLAT 545
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+D + + GD +++Q+++NLLSNA++FT EG I +R
Sbjct: 546 AIADDVP---TALMGDPRRIRQVITNLLSNALRFTDEGQIVLR----------------- 585
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+R D E ++ EV+D+G GI K +F+ +
Sbjct: 586 -----------------SRTDGE------------QWLVEVEDSGCGIDPAKLAEIFQPF 616
Query: 591 VQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
+QV GGTGLGL I L + MGG E+ E G+CF L +R A+A
Sbjct: 617 IQVSGKRGGTGLGLTISSRLAQAMGG--ELSATSTPEVGSCFCLR--LPLRVATA 667
>sp|P39453|TORS_ECOLI Sensor protein TorS OS=Escherichia coli (strain K12) GN=torS PE=1
SV=4
Length = 914
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 134/295 (45%), Gaps = 56/295 (18%)
Query: 353 LIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQM 412
+I+ +A +AE+ S KS A SH+IR L GI G +L ++ + +LR +
Sbjct: 427 VIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRD-DLRAI 485
Query: 413 NVCANDLLGLLNSILDTSKVEAG--KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVL 470
LL +LN ILD S +EAG + + +E F+ LLE + L + + +
Sbjct: 486 TDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLAT 545
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
+D + GD +++Q+++NLLSNA++FT EG+I +R
Sbjct: 546 AIADDMP---CALMGDPRRIRQVITNLLSNALRFTDEGYIILR----------------- 585
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
+R D E ++ EV+D+G GI K +F+ +
Sbjct: 586 -----------------SRTDGE------------QWLVEVEDSGCGIDPAKLAEIFQPF 616
Query: 591 VQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
VQV GGTGLGL I L + MGG E+ E G+CF L +R A+A
Sbjct: 617 VQVSGKRGGTGLGLTISSRLAQAMGG--ELSATSTPEVGSCFCLR--LPLRVATA 667
>sp|Q9P7Q7|MAK1_SCHPO Peroxide stress-activated histidine kinase mak1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mak1 PE=3 SV=1
Length = 1639
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 127/288 (44%), Gaps = 59/288 (20%)
Query: 355 KQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNV 414
K E+ +A+R +K +N SH+IR L GITG++ +E +E + R +
Sbjct: 979 KLQESNIEAQRIVRSKMQYLSNMSHEIRTPLIGITGMVSF-LLETQMSAEQLSYARIIQQ 1037
Query: 415 CANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVE----VVL 470
A LL ++N ILD SKV AG M+L + F V ++ED + +A KG+E V +
Sbjct: 1038 SAKSLLTVINDILDLSKVRAGMMKLTSQRFSVRAMMEDANETLGTLAFSKGIELNYTVDI 1097
Query: 471 DPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSS 530
D D V GD ++++Q+ N++ NA+KFT+ G + R V+K
Sbjct: 1098 DVPD-------IVFGDNMRMRQVALNVIGNAIKFTNVGEVFTRCSVEK------------ 1138
Query: 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590
N + +E DTG+G ++ + +F+ +
Sbjct: 1139 ---------------------------IDYSTNTVVLKWECIDTGQGFNRDDQLQMFKPF 1171
Query: 591 VQVKEG----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634
QV+ GG+GLGL I + LV L G + RG RF
Sbjct: 1172 SQVESSTLPRHGGSGLGLVISKELVELHNGSMSC----QSRRGVGTRF 1215
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G +L+A+D+++ +V L +G + +G LQ V ++ + Y
Sbjct: 1505 GFSVLLAEDNIINIKVISRYLERIGVKFKVTMDG---LQCVEEWKREKPNF-------YS 1554
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGK 1116
ILMD +MP+M+GY+A +IR+ E N +PI+AL+A+ ++G D +L K
Sbjct: 1555 LILMDLQMPVMDGYQACNEIRKYELENDYPKVPIVALSANALPHVVLSCKDSGFDSYLAK 1614
Query: 1117 PLNRDHL 1123
P+ HL
Sbjct: 1615 PITLQHL 1621
>sp|P26762|BVGS_BORBR Virulence sensor protein BvgS OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=bvgS PE=3 SV=2
Length = 1238
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 126/274 (45%), Gaps = 51/274 (18%)
Query: 351 ASLIKQM-EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNL 409
A L++++ +A + A+ + K+ A SH+IR + I G++EL + ++
Sbjct: 700 AELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEPDRQSI 759
Query: 410 RQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV 469
+ A LL L+ ILD +K+EAGK L + L E + +F +A +KG+E+V
Sbjct: 760 QVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGLARQKGIELV 819
Query: 470 LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529
L ++ V D +++KQ+LSNL+ NA+KFT+EG + V +P
Sbjct: 820 L---KTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQV-VLTVTARP---------- 865
Query: 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFEN 589
D A F V DTG GI + ++ +F+
Sbjct: 866 -------------------------------DGEAAHVQFSVSDTGCGISEADQRQLFKP 894
Query: 590 YVQV----KEGEG-GTGLGLGIVQSLVRLMGGDI 618
+ QV + G GTGLGL I + LV LMGG +
Sbjct: 895 FSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTL 928
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 24/139 (17%)
Query: 994 KPLRGKKILVADDS----MMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
KP ++LV DD M+LR+ L +LG V A ++GEAAL L
Sbjct: 968 KPQVSLRVLVVDDHKPNLMLLRQ----QLDYLGQRVVAADSGEAALALW----------- 1012
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKR---NQVHIPIIALTAHISGEEADKTI 1106
H +D ++ DC MP +NGYE R+IR E + + TA +EA +
Sbjct: 1013 --HEHAFDVVITDCNMPGINGYELARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCR 1070
Query: 1107 EAGMDVHLGKPLNRDHLME 1125
AGMD L KP+ D L +
Sbjct: 1071 AAGMDDCLFKPIGVDALRQ 1089
>sp|P44578|ARCB_HAEIN Aerobic respiration control sensor protein ArcB homolog
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=arcB PE=3 SV=1
Length = 325
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 157/351 (44%), Gaps = 74/351 (21%)
Query: 287 QFEVAGVKSVYALAMPRKGLVSL--VHRTSKRAL---ILLIVMTVGVLISMLTFVFKSAR 341
+F + GV + LA+ + L SL VH+ S + + ++T +I T + +
Sbjct: 22 RFSLLGVMILAVLALCTQILFSLFIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLE 81
Query: 342 AARKEM------------HLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGIT 389
+R ++ A+ K +A ++ E+ S +KS A SH+ R L GI
Sbjct: 82 HSRLDLSSSVNRLENEVAERIAAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIV 141
Query: 390 GLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449
GL ++ + + L+ +N+ A L + + I+D K++A +++L + D L
Sbjct: 142 GLSQILLDDELDDLQ-RNYLKTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPAL 200
Query: 450 LEDVVDLFHPVAMRKGV--EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE 507
L D+ + +A K + + L+P+ + L DRV+L QIL NL+SNAVKFT +
Sbjct: 201 LNDIYNFASFLAKEKNLIFSLELEPNLPNWLNL-----DRVRLSQILWNLISNAVKFTDQ 255
Query: 508 GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEF 567
G+I ++ R+++ F
Sbjct: 256 GNIILKIM--------------------------------------------RNQDCYHF 271
Query: 568 TFEVDDTGKGIPKEKRKTVFENYVQVKEGE---GGTGLGLGIVQSLVRLMG 615
V DTG GI E++K +FE Y QVKE G+G+GL I ++L +LMG
Sbjct: 272 I--VKDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMG 320
>sp|P30855|EVGS_ECOLI Sensor protein EvgS OS=Escherichia coli (strain K12) GN=evgS PE=1
SV=2
Length = 1197
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 138/299 (46%), Gaps = 55/299 (18%)
Query: 353 LIKQMEATQ-QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
LI +E + +A + ++ KS A SH+IR ++ I G +EL +G G E +
Sbjct: 694 LINALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELL---SGSGLSKEQRVEA 750
Query: 412 MNVC---ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
+++ LLGL+ ILD K+E+G QL + D+ L+++ F +A K + +
Sbjct: 751 ISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIAL 810
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
+ + VK D KQ+LSNLLSNA+KFT+EG VK +++G+
Sbjct: 811 ---SCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEG------AVKITTSLGH---- 857
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
D+N + D+G G+ +E+++ +F+
Sbjct: 858 -------------------------------IDDNHAVIKMTIMDSGSGLSQEEQQQLFK 886
Query: 589 NYVQVKEG--EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
Y Q G + G+GLGL I + L++ M GD+ + + + GT F + + I + A
Sbjct: 887 RYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSL--ESHPGIGTTFTITIPVEISQQVA 943
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 989 RSQAQKPLRGKK---ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQ 1045
++A++P+ + IL+ADD R + + L LG V+ +G AL V
Sbjct: 946 EAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVS------ 999
Query: 1046 RDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT 1105
+ YD ++ D MP M+G+E TRK+RE+ +PI LTA+ E +K
Sbjct: 1000 -------MQHYDLLITDVNMPNMDGFELTRKLREQNSS----LPIWGLTANAQANEREKG 1048
Query: 1106 IEAGMDVHLGKPLNRDHLMEAIKYLH 1131
+ GM++ L KPL D L + LH
Sbjct: 1049 LSCGMNLCLFKPLTLDVLKTHLSQLH 1074
>sp|Q54RP6|DHKL_DICDI Hybrid signal transduction histidine kinase L OS=Dictyostelium
discoideum GN=dhkL PE=3 SV=1
Length = 1709
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 131/293 (44%), Gaps = 61/293 (20%)
Query: 358 EATQQAERKSMNKS-LAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCA 416
E+ + K + KS L + SHDIR ++ I G+ +L ++ L + +
Sbjct: 818 ESKTLEQNKIIEKSRLRLSMMSHDIRTPMSNIIGMADL-LLDTSLSQHQHHYLEIIKNSS 876
Query: 417 NDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVV--LDPSD 474
N LL ++N ILD SK+EAGK+ + E FD + VV+ KG+E++ +DP
Sbjct: 877 NTLLTIINDILDISKIEAGKLDIDYESFDFNATVSQVVESMAQRVQSKGLELLSYVDPKI 936
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGF 534
++L G +L QIL+NLL N++KFT +G I
Sbjct: 937 PNIL-----IGPSSRLNQILTNLLGNSLKFTDKGEI------------------------ 967
Query: 535 LQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVD--DTGKGIPKEKRKTVFENYVQ 592
SI CL DE E+ +VD DTG GI KE +F+ + Q
Sbjct: 968 --SICCLL-----------------NDETDSEYEIKVDVRDTGIGIKKEALPLLFKAFTQ 1008
Query: 593 ----VKEGEGGTGLGLGIVQSLVRL-MGGDIEIVDKE-NGERGTC-FRFNVFL 638
+ GG+GLGL I + LV L G+I + + +G TC +F FL
Sbjct: 1009 AEGTITRQYGGSGLGLAICKELVHLAFNGEISVESQYGHGSTFTCILKFKKFL 1061
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 14/163 (8%)
Query: 967 GNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVE 1026
GN G S KQ E+ E+ ++ L GK +LV DD+ + ++ L+ +G V+
Sbjct: 1540 GNGCGVVSFWNKQRRASAEEQEQDPSK--LLGK-VLVVDDNHINIQILSKMLQTVGCEVD 1596
Query: 1027 ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQV 1086
+ +G AL + D YD I +D +MP M+G++ +RKIRE EK+ +
Sbjct: 1597 SVLSGADALAKINQSSGDS----------YDAIFLDIQMPDMDGFQVSRKIREREKKFSL 1646
Query: 1087 -HIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+ IIA TA++ E+ K +AGMD + KP+ R + E IK
Sbjct: 1647 PRVAIIATTANVFKEDQLKCFDAGMDDFISKPIKRAEIKEIIK 1689
>sp|Q95PI2|DHKC_DICDI Hybrid signal transduction histidine kinase C OS=Dictyostelium
discoideum GN=dhkC PE=1 SV=1
Length = 1225
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 54/275 (19%)
Query: 369 NKSL-AFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSIL 427
NKS+ ++ SH++R + + I+L ++ E L ++ AN LL L++++L
Sbjct: 418 NKSIDMISHLSHELRTPIHSVIASIQLFRSTILTVTQNEY-LSIIDTSANTLLELVSNVL 476
Query: 428 DTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDR 487
D ++ +GK+ L DF++ ++EDV + P A K +++ L F GD
Sbjct: 477 DYKRIRSGKLTLNNVDFNLCHVIEDVCAMVSPQAQAKSLQIASFIFIHCPLSF---YGDP 533
Query: 488 VKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKK 547
++L+Q+L NL+ N +K+T++G + +
Sbjct: 534 IRLRQVLLNLIGNGLKYTNKGQVCI----------------------------------- 558
Query: 548 ARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG-----GTGL 602
+V Q +E+ M F+V D+G GI +E +F + QV G G+GL
Sbjct: 559 ------SVEPEQVNEHCMYLHFQVKDSGIGIKEENMSKLFAGFSQVNNGGTTQEALGSGL 612
Query: 603 GLGIVQSLVRLMGGDIEI---VDKENGERGTCFRF 634
GL I + LV LMGG I + NGE G F F
Sbjct: 613 GLAISKDLVELMGGKIWCSSNATQNNGEAGCTFHF 647
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 995 PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHIL 1054
P KI++ DD+ + ++ + L G + E A+ Q D P I
Sbjct: 1073 PRAPTKIMILDDNPVSLKLMQRILESRGFECYPFDCSEKAVA--------QLDQVNPAI- 1123
Query: 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP----IIALTAHISGEEADKTIEAGM 1110
I MDCEMP MNG+E T+ IR+ E+ + + IIALTAHI+ E K +AGM
Sbjct: 1124 ----IFMDCEMPKMNGFECTQLIRKREQESLCLLKDRKIIIALTAHINPEIQVKCFDAGM 1179
Query: 1111 DVHLGKPL 1118
+ + KP
Sbjct: 1180 NDFISKPF 1187
>sp|Q9XH58|ETR1_PELHO Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1
Length = 740
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 136/306 (44%), Gaps = 51/306 (16%)
Query: 353 LIKQMEATQQAER------KSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE-- 404
L++Q A A R ++ N LA N H++R + I L L E SE
Sbjct: 323 LMEQNVALDMARREAETAIRARNDFLAVMN--HEMRTPMHAIIALSSLLQ-ETDLTSEQR 379
Query: 405 --LETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAM 462
+ET L+ N+ A L+N +LD S++E G +QL F++ + V +L P+A
Sbjct: 380 LMVETILKSSNLLAT----LINDVLDLSRLEDGSLQLDIATFNLHAVFRQVFNLIKPIAS 435
Query: 463 RKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI 522
K + + L+ S V GD +L QI+ N++ NAVKF+ EG ISV A V K ++
Sbjct: 436 VKKLFITLNVSPDLP---EYVIGDEKRLVQIMLNVVGNAVKFSKEGIISVTAFVAKSESV 492
Query: 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK 582
+P D V++ +N +V D+G GI +
Sbjct: 493 RDPR----------------------APDFFPVSS----DNQFYMRVQVKDSGSGINPQD 526
Query: 583 RKTVFENYVQVK----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+F + Q + + GG+GLGL I + V LM G I I D E +G F V L
Sbjct: 527 MPKLFTKFAQSQPVATKNSGGSGLGLAISKRFVNLMDGHIWI-DSEGPSKGCTVTFVVKL 585
Query: 639 AIREAS 644
I E S
Sbjct: 586 GIPEGS 591
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 949 GEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSM 1008
EGP + + ++K G EGS+ K + + SQ P G K+L+ D++
Sbjct: 570 SEGPSKGC--TVTFVVKLG--IPEGSNEPKLPLMPKVSANNSQTDFP--GLKVLLMDENG 623
Query: 1009 MLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM 1068
+ R V + L HLG V + + E L++V + + MD +P +
Sbjct: 624 ISRMVTKGLLMHLGCDVTSVSSSEECLRMVSQD--------------HKVVFMDVRVPGL 669
Query: 1069 NGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128
+G+E +I E+ + I+ALT++ + + GM+ + KP++ D + +
Sbjct: 670 DGHELAVRIHEKFMKRHERPLIVALTSNADKVTKENCLRVGMEGVILKPVSVDKMRNVLS 729
Query: 1129 YL 1130
L
Sbjct: 730 KL 731
>sp|P58402|EVGS_ECO57 Sensor protein EvgS OS=Escherichia coli O157:H7 GN=evgS PE=3 SV=1
Length = 1197
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 132/299 (44%), Gaps = 55/299 (18%)
Query: 353 LIKQMEATQ-QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQ 411
LI +E + +A ++ KS A SH+IR ++ I G +EL +G G E +
Sbjct: 694 LIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELL---SGSGLSKEQRVEA 750
Query: 412 MNVC---ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV 468
+++ LLGL+ ILD K+E+G QL + D+ L+++ F +A K + +
Sbjct: 751 ISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIAL 810
Query: 469 VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528
+ VK D KQ+LSNLLSNA+KFT+EG + + +
Sbjct: 811 ---SCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSL------------ 855
Query: 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588
D+N + D+G G+ +E+++ +F+
Sbjct: 856 -----------------------------VHIDDNHAVIKMTIMDSGSGLSQEEQQQLFK 886
Query: 589 NYVQVKEG--EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
Y Q G + G+GLGL I + L++ M GD+ + + + GT F + + I + A
Sbjct: 887 RYSQTSAGRQQTGSGLGLMICKELIKNMQGDLSL--ESHPGIGTTFTITIPVEIIQQVA 943
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 982 IEEEDGERSQAQKPLRGKK---ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLV 1038
I++ ++A++P+ + IL+ADD R + + L LG V+ +G AL V
Sbjct: 939 IQQVAAVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV 998
Query: 1039 RSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHIS 1098
+ YD ++ D MP ++G+E TRK+RE+ +PI LTA+
Sbjct: 999 S-------------MQHYDLLITDVNMPNVDGFELTRKLREQNSS----LPIWGLTANAQ 1041
Query: 1099 GEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH 1131
E +K + GM++ L KPL D L + LH
Sbjct: 1042 ANEREKGLNCGMNLCLFKPLTLDVLKTHLSQLH 1074
>sp|Q9XH57|ETR2_PELHO Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1
Length = 741
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 137/310 (44%), Gaps = 57/310 (18%)
Query: 353 LIKQMEATQQAER------KSMNKSLAFANASHDIRAALAGITGLIELCY-VEAGPGSEL 405
L++Q A A R ++ N LA N H++R + I L L E P L
Sbjct: 323 LMEQNVALDMARREAETAIRARNDFLAVMN--HEMRTPMHAIIALSSLLQETELTPEQRL 380
Query: 406 --ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
ET L+ N+ A L+N +LD S++E G +QL F++ LL +V +L P+A
Sbjct: 381 MVETVLKSSNLLAT----LINDVLDLSRLEDGSLQLDIGTFNLHALLREVHNLIKPIASV 436
Query: 464 K----GVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519
K + V D + +V GD +L QI+ N++ NAVKF+ EG+IS+ A V K
Sbjct: 437 KKLCISLNVATDLPEYAV-------GDEKRLVQIILNVVGNAVKFSKEGNISITAFVAKS 489
Query: 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
++ +P D + EN +V D+G GI
Sbjct: 490 ESLRDPR----------------------APDFFPICG----ENQFYLRVQVKDSGLGIN 523
Query: 580 KEKRKTVFENYVQVK----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635
+ +F + Q + + GG+GLGL I + V LM G I I D E +G F
Sbjct: 524 PQDIPRLFTKFAQTQPVATKNSGGSGLGLAICKRFVNLMEGHIWI-DSEGPGKGCTATFV 582
Query: 636 VFLAIREASA 645
V L I E S+
Sbjct: 583 VKLGIPERSS 592
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
+ Q G K+L+ DD+ + R V L HLG V + + L++V
Sbjct: 605 NHGQTNFSGLKVLLLDDNGVSRAVTRGLLAHLGCDVTTVSSSDELLRVVSQD-------- 656
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
Y + MD MP ++G+E +I E+ I+ALT +I D G
Sbjct: 657 ------YKVVFMDVCMPEVDGFEIAVRIHEKFMTRHERPLIVALTGNIDQVTKDNCTRVG 710
Query: 1110 MDVHLGKPLNRDHL 1123
M+ + KP++ D +
Sbjct: 711 MEGVVLKPVSIDKM 724
>sp|Q41342|ETR1_SOLLC Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1
Length = 754
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 128/289 (44%), Gaps = 41/289 (14%)
Query: 359 ATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCY-VEAGPGSEL--ETNLRQMNVC 415
A ++AE ++ A +H++R + I L L + P L ET L+ N+
Sbjct: 347 ARREAEMAVRARNDFLAVMNHEMRTPMHAIIALSSLLQETDLTPEQRLMVETILKSSNLL 406
Query: 416 ANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDG 475
A L+N +LD S++E G +QL F++ L +V L P+A K + V L S
Sbjct: 407 AT----LINDVLDLSRLEDGSLQLDIGTFNLHALFREVHSLIKPIASVKKLFVTLSLSSD 462
Query: 476 SVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFL 535
V GD +L QIL N++ NAVKF+ EG++S+ A V K ++ +P
Sbjct: 463 LP---EYVIGDEKRLMQILLNVVGNAVKFSKEGNVSISAFVAKSDSLRDPRAPE------ 513
Query: 536 QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK- 594
F+ A EN ++ DTG GI + +F + Q +
Sbjct: 514 ------FF--------------AVPSENHFYLRVQIKDTGIGITPQDIPNLFSKFTQSQA 553
Query: 595 ---EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
GGTGLGL I + V LM G I I + E +G+ F + L I
Sbjct: 554 LATTNSGGTGLGLAICKRFVNLMEGHIWI-ESEGLGKGSTAIFIIKLGI 601
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
+ Q +G K+LV D++ + R V + L HLG V + + L++V
Sbjct: 619 NHTQMSFQGLKVLVMDENGVSRMVTKGLLTHLGCDVTTVGSRDECLRVVTH--------- 669
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
+ ++MD M ++ YE I E + I+ALT + + + G
Sbjct: 670 -----EHKVVIMDVSMQGIDCYEVAVVIHERFGKRHGRPLIVALTGNTDRVTKENCMRVG 724
Query: 1110 MDVHLGKPLN 1119
MD + KP++
Sbjct: 725 MDGVILKPVS 734
>sp|P49333|ETR1_ARATH Ethylene receptor 1 OS=Arabidopsis thaliana GN=ETR1 PE=1 SV=1
Length = 738
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 141/303 (46%), Gaps = 50/303 (16%)
Query: 359 ATQQAER--KSMNKSLAFANASHDIRAALAGITGLIELCY-VEAGPGSEL--ETNLRQMN 413
A ++AE ++ N LA N H++R + I L L E P L ET L+ N
Sbjct: 333 ARREAETAIRARNDFLAVMN--HEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSN 390
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ A L+N +LD S++E G +QL F++ L +V++L P+A+ K + + L+ +
Sbjct: 391 LLAT----LMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIKPIAVVKKLPITLNLA 446
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ +F V GD +L QI+ N++ NAVKF+ +G ISV A V K S + +
Sbjct: 447 P-DLPEF--VVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTK-------SDTRAADF 496
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
F+ FY K V D+G GI + +F + Q
Sbjct: 497 FVVPTGSHFYLRVK-----------------------VKDSGAGINPQDIPKIFTKFAQT 533
Query: 594 K----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNN 649
+ GG+GLGL I + V LM G+I I + + +G F+V L I E S N++
Sbjct: 534 QSLATRSSGGSGLGLAISKRFVNLMEGNIWI-ESDGLGKGCTAIFDVKLGISERS-NESK 591
Query: 650 TQG 652
G
Sbjct: 592 QSG 594
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G K+LV D++ + R V + L HLG V + E L++V +
Sbjct: 609 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH--------------EHK 654
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIP-IIALTAHISGEEADKTIEAGMDVHLGK 1116
+ MD MP + Y+ +I E+ + + P ++AL+ + +K + G+D L K
Sbjct: 655 VVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLK 714
Query: 1117 PLNRDHLMEAIKYL 1130
P++ D++ + + L
Sbjct: 715 PVSLDNIRDVLSDL 728
>sp|O49187|ETR2_SOLLC Ethylene receptor 2 OS=Solanum lycopersicum GN=ETR2 PE=2 SV=1
Length = 736
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 133/302 (44%), Gaps = 51/302 (16%)
Query: 353 LIKQMEATQQAER------KSMNKSLAFANASHDIRAALAGITGLIELCY-VEAGPGSEL 405
LI+Q A A R ++ N L N H++R + + L L E P L
Sbjct: 321 LIEQNVALDLARREAETAVRARNDFLGVMN--HEMRTPMHAVVALSSLLQESELIPEQRL 378
Query: 406 --ETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463
ET L+ N+ A L+N +LD S++E G +QL F++ L +V++L PVA
Sbjct: 379 MVETILKSSNLLAT----LINDVLDLSRLEDGSLQLDVGTFNLHALFREVLNLIKPVAAV 434
Query: 464 KGVEVVLDPSDGSVLKFSKVK-GDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI 522
K + V L S F +V GD +L QIL N++ NAVKF+ EG +SV A K ++
Sbjct: 435 KKLFVTLSLSS----DFPEVAIGDEKRLMQILLNVVGNAVKFSKEGSVSVSAVNAKSESL 490
Query: 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK 582
+P F+ + EN +V DTG GI +
Sbjct: 491 IDPRAPE------------FF--------------PVQSENHFYLRVQVKDTGSGINPQD 524
Query: 583 RKTVFENYVQVKE----GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638
+F + Q +E GTGLGL I + V LM G I I + E +G+ F V L
Sbjct: 525 FPKLFCKFAQNQEPATKNSAGTGLGLAICKRFVNLMEGHIWI-ESEGVGKGSTAIFIVKL 583
Query: 639 AI 640
I
Sbjct: 584 GI 585
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 990 SQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLG 1049
+ Q +G K+LV DD+ R V + L HLG V +G+ L+++ R+
Sbjct: 603 NHMQMTFQGLKVLVMDDNGFSRMVTKSLLVHLGCDVTTIGSGDECLRIL------TRE-- 654
Query: 1050 APHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109
+ ++MD + MN Y+ + E+ + I+ALT + + + G
Sbjct: 655 ------HKVLIMDASITGMNCYDVAVSVHEKFGKRLERPLIVALTGNTDQVTKENCLRVG 708
Query: 1110 MDVHLGKPLNRDHL 1123
MD + KP++ D +
Sbjct: 709 MDGVILKPVSIDKM 722
>sp|O49230|ETR1_BRAOL Ethylene receptor 1 OS=Brassica oleracea GN=ETR1 PE=2 SV=1
Length = 735
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 134/295 (45%), Gaps = 48/295 (16%)
Query: 359 ATQQAER--KSMNKSLAFANASHDIRAALAGITGLIELCY-VEAGPGSEL--ETNLRQMN 413
A ++AE ++ N LA N H++R + I L L E P L ET L+ +
Sbjct: 333 ARREAETAIRARNDFLAVMN--HEMRTPMHAIIALSSLLQETELTPEQRLMVETVLKSSS 390
Query: 414 VCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPS 473
+ A L+N +LD S++E G +QL F++ L +V++L P+A+ K + + L+ +
Sbjct: 391 LLAT----LMNDVLDLSRLEDGSLQLELGTFNLHTLFREVLNLIKPIAVVKKLPITLNLA 446
Query: 474 DGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHG 533
+ +F V GD +L QI+ N++ NAVKF+ +G ISV A V K P
Sbjct: 447 P-DLPEF--VVGDEKRLMQIILNIVGNAVKFSKQGSISVTALVTKSDNRAPPDF------ 497
Query: 534 FLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593
F+ FY K V D G GI + +F + Q
Sbjct: 498 FVVPTGSHFYLRVK-----------------------VKDLGAGINPQDIPKLFTKFAQT 534
Query: 594 K----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREAS 644
+ GG+GLGL I + V LM G+I I + E +G F+V LAI S
Sbjct: 535 QSLATRSSGGSGLGLAISKRFVNLMEGNIWI-ESEGVGKGCTAIFDVKLAISNES 588
Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD 1057
G K+LV D++ + R V + L HLG V + E L++V ++ R
Sbjct: 607 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS---HEHR----------- 652
Query: 1058 YILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117
+ MD P + Y+ +I E+ + ++ALT + +K + G+D L KP
Sbjct: 653 VVFMDVCTPGVENYQIALRIHEKFTKRHQRPLLVALTGNTDKSTKEKCMSFGLDGVLLKP 712
Query: 1118 LNRDHL 1123
++ D++
Sbjct: 713 VSLDNM 718
>sp|P37894|PLEC_CAUCR Non-motile and phage-resistance protein OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=pleC PE=1 SV=2
Length = 842
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 131/280 (46%), Gaps = 56/280 (20%)
Query: 350 CASLIKQMEATQ-QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEA-GP-GSELE 406
A L ++ E + +AE + KS AN SH++R L I G E+ E GP G +
Sbjct: 580 LAELARKYETEKVKAESANKAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQRY 639
Query: 407 TNLRQ-MNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKG 465
Q ++ LL L+N ILD SK+EAGKM L E + ++ ED V L A G
Sbjct: 640 KGYSQDIHSSGQHLLALINDILDMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEAAG 699
Query: 466 VEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGN 524
+++ +D + +++ D +KQ+L NLLSNA+KFT G ++VRA V++ +
Sbjct: 700 LKLDID-----FPQLPEIEADYRAVKQVLLNLLSNAIKFTPRAGSVTVRAEVRR-----D 749
Query: 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRK 584
P GDL V+ V DTG GI KE
Sbjct: 750 PF-----------------------GDLIKVS--------------VTDTGIGIAKEDLA 772
Query: 585 TVFENYVQVK----EGEGGTGLGLGIVQSLVRLMGGDIEI 620
+ + + QV+ + GTGLGL + +SL+ + G +E+
Sbjct: 773 RLAKPFEQVESQFSKTTQGTGLGLALTKSLITMHDGVLEM 812
>sp|Q54SP4|DHKD_DICDI Hybrid signal transduction histidine kinase D OS=Dictyostelium
discoideum GN=dhkD PE=2 SV=1
Length = 1546
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 114/256 (44%), Gaps = 50/256 (19%)
Query: 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429
K+ FAN SH++R LA I G + + + +L + A LL ++N++LD
Sbjct: 212 KTQFFANVSHELRTPLALIVGPTDKLLKDENVDINVRKDLEIVARNARGLLKIVNNLLDI 271
Query: 430 SKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEV-VLDPSDGSVLKFSKVKGDRV 488
S++EAGKM L ++G+ + + F +A K ++ ++ PS+ + D
Sbjct: 272 SRLEAGKMNLNYSMVNLGQTVHLIASCFEILAREKSLDFSIITPSEPMMAAI-----DAD 326
Query: 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKA 548
K++++++NL+SNA KFT G ++ C+ K
Sbjct: 327 KMQRVITNLISNAFKFTPSGG---------------------------AVKCILEK---- 355
Query: 549 RGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK----EGEGGTGLGL 604
DL N F V DTG GIP + +FE + QV GGTGLGL
Sbjct: 356 -FDLSP--------NKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGSSTRKHGGTGLGL 406
Query: 605 GIVQSLVRLMGGDIEI 620
IV+ V L GG + I
Sbjct: 407 SIVKEFVTLHGGTVTI 422
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 67/299 (22%)
Query: 374 FANASHDIRAALAGITGLIELCYVEAGPGSE--------------LETNLRQMNVCANDL 419
F N SH++R L GI G +L + G + T L + CA+
Sbjct: 745 FMNLSHELRTPLNGILGWCQLLLYDIDSGGSSGGGSGSISGDDSTVRTGLETIERCASSQ 804
Query: 420 LGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLD-----PSD 474
L+N +LD S + K LI D D+ L+E+ + A K + V + +
Sbjct: 805 NQLINDLLDMSLIIGDKFSLILGDVDLPILIENAISSILVTAQSKKISVHSNIQGEGEEE 864
Query: 475 GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG---HISVRACVKKPSA-----IGNPS 526
S+L+ + GD+ +L+Q++ NLLSN++KFT E H++++ + PS NP
Sbjct: 865 SSILR--NIVGDKARLQQVIWNLLSNSIKFTKEKGRIHLNLKVVNQIPSREVLGFCSNPM 922
Query: 527 LSS-SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKT 585
++ +RHG F + D GKGIPK+ +
Sbjct: 923 FNTINRHG------------------------------DRWILFTITDNGKGIPKQFLPS 952
Query: 586 VFENYVQVK----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640
VF+ + Q GG G+GL I Q+++ L G + + E +G+ +F V L I
Sbjct: 953 VFDRFKQADCSSTRSYGGLGIGLSITQNIIHLHKGAV-YANSEGENKGS--QFTVVLPI 1008
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 1057 DYILMDCEMPIMNGYEATRKIREEEKRNQVH--IPIIALTAHISGEEADKTIEAGMDVHL 1114
D IL D MP +GY RK+R+ EK N + PIIALTA +S + +K +++G D+H
Sbjct: 1407 DIILSDLTMPFEDGYSMVRKLRDREKINTQNKKTPIIALTASVSSSDKEKVLKSGFDLHC 1466
Query: 1115 GKPLNRDHLMEAIKYL 1130
KP+N L +I L
Sbjct: 1467 SKPVNFLELSNSILTL 1482
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 29/191 (15%)
Query: 937 NASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEE-EDGERSQAQKP 995
N ++L KT SS DI NA LK S G Q +EE + + Q+Q+
Sbjct: 515 NFNILKKTNTSS------DIASNA---LKDNMGSIMGVHAIAQQAVEELTEKQFYQSQEN 565
Query: 996 LRGKKIL--VADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHI 1053
+ K I+ V D+ M R +AE+ L V A + E G+ R I
Sbjct: 566 IHNKPIVLVVEDNPEMNRFIAEL-LSKYYFVVTAFDGVE--------GIEKTR-----AI 611
Query: 1054 LPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113
P D I+ DC MP M+G E ++R +E+ + +IPI+ LTA K ++ G+ +
Sbjct: 612 TP-DLIVTDCMMPRMSGDEMVEQLRSDEQFD--NIPILLLTAKADENLRIKLLQNGVSDY 668
Query: 1114 LGKPLNRDHLM 1124
+ KP + + L+
Sbjct: 669 VNKPFSSEELV 679
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,582,566
Number of Sequences: 539616
Number of extensions: 17807242
Number of successful extensions: 52152
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 648
Number of HSP's that attempted gapping in prelim test: 50696
Number of HSP's gapped (non-prelim): 1285
length of query: 1131
length of database: 191,569,459
effective HSP length: 128
effective length of query: 1003
effective length of database: 122,498,611
effective search space: 122866106833
effective search space used: 122866106833
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)