Query 042553
Match_columns 1131
No_of_seqs 814 out of 5455
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10841 hybrid sensory kinase 100.0 1.3E-54 2.8E-59 557.2 72.4 474 362-1130 439-916 (924)
2 PRK11107 hybrid sensory histid 100.0 2.6E-54 5.7E-59 562.4 67.0 495 363-1130 286-784 (919)
3 PRK15347 two component system 100.0 1.4E-52 3E-57 546.5 68.5 227 361-639 389-615 (921)
4 TIGR02956 TMAO_torS TMAO reduc 100.0 2.3E-49 5E-54 518.7 54.1 227 362-639 456-684 (968)
5 PRK11466 hybrid sensory histid 100.0 4.9E-48 1.1E-52 503.2 54.5 223 364-638 438-662 (914)
6 PRK11091 aerobic respiration c 100.0 9.6E-49 2.1E-53 500.9 45.9 224 365-639 278-506 (779)
7 PRK09959 hybrid sensory histid 100.0 2.7E-44 5.8E-49 480.3 47.9 231 362-638 704-936 (1197)
8 PRK13837 two-component VirA-li 100.0 2.4E-40 5.3E-45 424.5 48.9 227 368-638 448-675 (828)
9 PRK10618 phosphotransfer inter 100.0 6.5E-40 1.4E-44 415.6 45.7 277 362-734 442-721 (894)
10 KOG0519 Sensory transduction h 100.0 2.1E-40 4.5E-45 415.1 20.8 287 344-640 193-490 (786)
11 COG5002 VicK Signal transducti 100.0 1.5E-39 3.3E-44 348.5 18.6 219 369-639 224-449 (459)
12 COG2205 KdpD Osmosensitive K+ 100.0 1.2E-36 2.7E-41 359.1 27.1 220 367-640 657-881 (890)
13 PRK13557 histidine kinase; Pro 100.0 6.5E-34 1.4E-38 348.3 46.1 226 371-638 164-394 (540)
14 PRK09303 adaptive-response sen 100.0 5.7E-34 1.2E-38 334.3 32.0 226 363-639 144-378 (380)
15 COG4191 Signal transduction hi 100.0 7.1E-31 1.5E-35 302.7 37.5 209 374-638 388-601 (603)
16 PRK10815 sensor protein PhoQ; 100.0 1.5E-30 3.1E-35 314.4 39.4 214 370-639 266-479 (485)
17 PRK11006 phoR phosphate regulo 100.0 3.6E-31 7.8E-36 316.0 28.4 216 370-639 204-424 (430)
18 PRK10604 sensor protein RstB; 100.0 3.9E-30 8.4E-35 307.4 37.1 213 367-640 209-425 (433)
19 PRK09835 sensor kinase CusS; P 100.0 2.8E-29 6E-34 303.7 44.1 216 368-638 260-480 (482)
20 TIGR03785 marine_sort_HK prote 100.0 1.7E-28 3.8E-33 307.8 49.2 216 368-637 483-703 (703)
21 PRK10364 sensor protein ZraS; 100.0 1.7E-29 3.6E-34 304.1 38.2 212 370-639 237-449 (457)
22 PRK10755 sensor protein BasS/P 100.0 2.5E-29 5.5E-34 292.5 34.5 213 369-638 136-350 (356)
23 PRK10490 sensor protein KdpD; 100.0 1.9E-29 4.1E-34 323.5 33.6 218 368-639 662-883 (895)
24 PRK10337 sensor protein QseC; 100.0 9.5E-29 2.1E-33 296.6 37.5 212 368-635 235-448 (449)
25 PRK10549 signal transduction h 100.0 1.7E-28 3.7E-33 295.6 37.8 218 367-639 237-459 (466)
26 TIGR02938 nifL_nitrog nitrogen 100.0 4.1E-29 8.9E-34 301.6 30.3 211 370-638 276-494 (494)
27 TIGR01386 cztS_silS_copS heavy 100.0 3.8E-28 8.2E-33 291.3 37.3 212 370-637 241-457 (457)
28 PRK09470 cpxA two-component se 100.0 5E-27 1.1E-31 282.3 39.7 214 368-639 241-458 (461)
29 PRK11100 sensory histidine kin 100.0 1E-26 2.2E-31 280.1 40.3 215 369-638 255-473 (475)
30 PRK09467 envZ osmolarity senso 100.0 4.5E-27 9.8E-32 280.8 33.8 209 365-639 224-434 (435)
31 COG4251 Bacteriophytochrome (l 100.0 2.6E-27 5.7E-32 271.7 24.7 222 362-640 516-743 (750)
32 COG3852 NtrB Signal transducti 100.0 4.3E-27 9.3E-32 250.5 23.3 218 372-640 134-356 (363)
33 TIGR02966 phoR_proteo phosphat 100.0 1.9E-26 4E-31 263.7 27.9 214 370-636 114-333 (333)
34 PRK11073 glnL nitrogen regulat 99.9 3.8E-26 8.3E-31 264.6 27.5 216 370-638 130-347 (348)
35 PRK11360 sensory histidine kin 99.9 7.8E-24 1.7E-28 262.0 38.2 210 372-639 392-602 (607)
36 COG0642 BaeS Signal transducti 99.9 2.9E-24 6.3E-29 243.3 30.5 216 370-640 115-331 (336)
37 TIGR02916 PEP_his_kin putative 99.9 1.2E-23 2.6E-28 265.0 29.0 202 371-637 476-679 (679)
38 PRK13560 hypothetical protein; 99.9 6E-23 1.3E-27 263.9 25.1 206 360-639 595-804 (807)
39 PRK11086 sensory histidine kin 99.9 3.9E-21 8.5E-26 236.0 37.5 194 371-639 340-536 (542)
40 PRK11644 sensory histidine kin 99.9 6.3E-21 1.4E-25 230.8 32.5 193 370-638 302-494 (495)
41 COG5000 NtrY Signal transducti 99.9 1.6E-21 3.5E-26 224.1 19.7 203 377-638 493-708 (712)
42 PRK15053 dpiB sensor histidine 99.9 8.3E-21 1.8E-25 233.8 26.3 194 373-639 341-540 (545)
43 COG4192 Signal transduction hi 99.8 2.1E-19 4.7E-24 199.2 25.5 206 374-636 455-664 (673)
44 COG0745 OmpR Response regulato 99.8 6.5E-20 1.4E-24 198.8 16.6 115 999-1130 1-115 (229)
45 PRK13559 hypothetical protein; 99.8 3.7E-18 8E-23 199.1 23.1 184 370-638 170-359 (361)
46 COG3290 CitA Signal transducti 99.8 9.4E-16 2E-20 177.5 33.1 192 374-639 337-532 (537)
47 PF02518 HATPase_c: Histidine 99.8 5.2E-18 1.1E-22 163.5 11.6 106 485-638 1-110 (111)
48 PRK10935 nitrate/nitrite senso 99.7 2.8E-16 6.1E-21 194.4 25.5 192 374-639 364-560 (565)
49 COG4753 Response regulator con 99.7 9.1E-17 2E-21 186.1 14.0 115 999-1130 2-119 (475)
50 PF00072 Response_reg: Respons 99.7 4.3E-16 9.3E-21 149.5 15.9 111 1001-1128 1-112 (112)
51 COG2204 AtoC Response regulato 99.7 4.4E-16 9.5E-21 181.1 16.1 114 999-1129 5-118 (464)
52 COG3437 Response regulator con 99.7 2.6E-16 5.7E-21 173.6 12.8 118 997-1128 13-130 (360)
53 PRK10600 nitrate/nitrite senso 99.7 1.2E-14 2.6E-19 180.1 27.3 184 381-639 373-557 (569)
54 COG0784 CheY FOG: CheY-like re 99.6 5E-15 1.1E-19 145.9 16.3 117 997-1129 4-122 (130)
55 COG2197 CitB Response regulato 99.6 6.2E-15 1.3E-19 158.6 16.4 114 1000-1130 2-117 (211)
56 COG4566 TtrR Response regulato 99.6 3.5E-15 7.6E-20 150.5 13.1 114 999-1129 5-118 (202)
57 COG4565 CitB Response regulato 99.6 9.6E-15 2.1E-19 150.2 14.1 113 1000-1129 2-116 (224)
58 PRK10547 chemotaxis protein Ch 99.6 5.8E-14 1.3E-18 172.5 21.2 143 444-640 343-525 (670)
59 COG3706 PleD Response regulato 99.6 2.6E-14 5.7E-19 165.1 15.2 119 997-1130 131-249 (435)
60 PLN03029 type-a response regul 99.5 9.7E-14 2.1E-18 150.8 16.8 130 997-1128 7-143 (222)
61 PRK10046 dpiA two-component re 99.5 1.3E-13 2.9E-18 150.1 17.1 115 999-1130 5-121 (225)
62 PRK09581 pleD response regulat 99.5 2.6E-13 5.5E-18 162.9 20.6 117 997-1129 154-270 (457)
63 PRK11173 two-component respons 99.5 4.6E-13 1E-17 146.5 17.1 114 999-1130 4-117 (237)
64 PRK10816 DNA-binding transcrip 99.5 5E-13 1.1E-17 144.5 17.0 114 1000-1130 2-115 (223)
65 PRK10529 DNA-binding transcrip 99.5 5.7E-13 1.2E-17 144.2 16.8 114 999-1130 2-115 (225)
66 PRK09836 DNA-binding transcrip 99.5 7.5E-13 1.6E-17 143.6 17.2 114 1000-1130 2-115 (227)
67 PRK09468 ompR osmolarity respo 99.5 1.1E-12 2.5E-17 143.4 17.3 115 999-1130 6-120 (239)
68 PRK10643 DNA-binding transcrip 99.5 1.2E-12 2.6E-17 140.8 16.9 114 1000-1130 2-115 (222)
69 PRK10766 DNA-binding transcrip 99.5 1.3E-12 2.8E-17 141.0 16.6 114 999-1130 3-116 (221)
70 COG3947 Response regulator con 99.4 3E-13 6.5E-18 144.1 10.4 112 1000-1130 2-113 (361)
71 PRK10161 transcriptional regul 99.4 1.7E-12 3.7E-17 141.0 16.7 117 999-1130 3-119 (229)
72 TIGR02154 PhoB phosphate regul 99.4 1.9E-12 4.1E-17 139.5 16.8 117 999-1130 3-119 (226)
73 PRK10336 DNA-binding transcrip 99.4 2.1E-12 4.5E-17 138.8 16.7 114 1000-1130 2-115 (219)
74 TIGR03787 marine_sort_RR prote 99.4 2.2E-12 4.8E-17 139.8 17.0 115 999-1130 1-117 (227)
75 PRK10955 DNA-binding transcrip 99.4 1.8E-12 4E-17 140.7 16.2 112 1000-1130 3-114 (232)
76 PRK13856 two-component respons 99.4 1.9E-12 4.2E-17 142.1 16.5 113 1000-1130 3-116 (241)
77 PRK10701 DNA-binding transcrip 99.4 2.2E-12 4.7E-17 141.4 16.7 113 1000-1130 3-115 (240)
78 PRK10430 DNA-binding transcrip 99.4 2E-12 4.3E-17 142.3 16.3 116 999-1129 2-119 (239)
79 PRK10840 transcriptional regul 99.4 3E-12 6.5E-17 138.5 16.2 116 998-1130 3-123 (216)
80 TIGR02875 spore_0_A sporulatio 99.4 3.4E-12 7.4E-17 142.3 16.7 117 999-1130 3-121 (262)
81 PRK11517 transcriptional regul 99.4 4.6E-12 1E-16 136.6 16.9 113 1000-1130 2-114 (223)
82 PRK04184 DNA topoisomerase VI 99.4 1E-12 2.2E-17 156.2 12.5 111 484-639 31-153 (535)
83 COG4567 Response regulator con 99.4 2.6E-12 5.6E-17 124.4 12.7 112 1000-1128 11-122 (182)
84 PRK11083 DNA-binding response 99.4 5.6E-12 1.2E-16 136.2 16.9 115 999-1130 4-118 (228)
85 TIGR01387 cztR_silR_copR heavy 99.4 6E-12 1.3E-16 135.0 16.2 113 1001-1130 1-113 (218)
86 PRK09958 DNA-binding transcrip 99.4 1.1E-11 2.5E-16 131.7 16.5 114 1000-1130 2-116 (204)
87 CHL00148 orf27 Ycf27; Reviewed 99.4 1.3E-11 2.9E-16 134.6 17.2 115 998-1130 6-120 (240)
88 smart00387 HATPase_c Histidine 99.4 1.1E-11 2.4E-16 117.1 14.0 106 485-638 1-110 (111)
89 PRK14084 two-component respons 99.3 1.5E-11 3.2E-16 135.6 16.6 113 999-1130 1-115 (246)
90 PRK10923 glnG nitrogen regulat 99.3 1.4E-11 3.1E-16 149.2 17.3 115 999-1130 4-118 (469)
91 PRK15115 response regulator Gl 99.3 1.1E-11 2.3E-16 149.2 16.0 116 998-1130 5-120 (444)
92 PRK09483 response regulator; P 99.3 2E-11 4.4E-16 131.1 16.2 115 999-1130 2-118 (217)
93 PRK11361 acetoacetate metaboli 99.3 2.2E-11 4.7E-16 147.1 17.0 116 998-1130 4-119 (457)
94 PRK09935 transcriptional regul 99.3 3.7E-11 7.9E-16 128.1 16.8 115 999-1130 4-120 (210)
95 PRK12555 chemotaxis-specific m 99.3 2E-11 4.2E-16 141.5 15.7 113 1000-1130 2-127 (337)
96 TIGR02915 PEP_resp_reg putativ 99.3 1.8E-11 4E-16 147.2 15.6 110 1001-1129 1-115 (445)
97 PRK10365 transcriptional regul 99.3 1.6E-11 3.6E-16 147.4 14.8 115 998-1129 5-119 (441)
98 PRK10360 DNA-binding transcrip 99.3 4.2E-11 9.1E-16 126.5 15.6 111 1000-1130 3-115 (196)
99 TIGR01818 ntrC nitrogen regula 99.3 2.7E-11 5.9E-16 146.4 15.7 113 1001-1130 1-113 (463)
100 PRK10710 DNA-binding transcrip 99.3 8E-11 1.7E-15 128.5 17.6 114 999-1130 11-124 (240)
101 PRK11697 putative two-componen 99.3 4.4E-11 9.5E-16 131.1 15.5 112 999-1130 2-115 (238)
102 PRK10100 DNA-binding transcrip 99.3 3.9E-11 8.4E-16 129.6 13.7 112 998-1130 10-124 (216)
103 PRK15479 transcriptional regul 99.3 1.1E-10 2.4E-15 125.4 16.8 114 1000-1130 2-115 (221)
104 PRK14868 DNA topoisomerase VI 99.3 3.3E-11 7.2E-16 145.6 13.7 105 485-636 42-159 (795)
105 PRK00742 chemotaxis-specific m 99.2 1.4E-10 3E-15 135.3 16.4 103 999-1119 4-110 (354)
106 PRK09390 fixJ response regulat 99.2 1.2E-10 2.7E-15 122.4 14.3 114 999-1129 4-117 (202)
107 PF00512 HisKA: His Kinase A ( 99.2 5.6E-11 1.2E-15 103.9 9.5 66 370-435 2-68 (68)
108 TIGR01052 top6b DNA topoisomer 99.2 6.8E-11 1.5E-15 139.4 12.5 98 483-625 22-130 (488)
109 PRK11475 DNA-binding transcrip 99.2 1.2E-10 2.5E-15 125.0 13.3 103 1011-1130 3-112 (207)
110 PRK09581 pleD response regulat 99.2 2.5E-10 5.4E-15 137.1 16.9 116 1000-1130 4-119 (457)
111 COG2201 CheB Chemotaxis respon 99.2 1.2E-10 2.6E-15 131.0 12.7 103 999-1119 2-108 (350)
112 PRK13558 bacterio-opsin activa 99.2 2.3E-10 5.1E-15 144.7 14.9 113 999-1128 8-122 (665)
113 TIGR01925 spIIAB anti-sigma F 99.1 3.6E-10 7.7E-15 113.3 12.7 97 486-636 36-136 (137)
114 cd00075 HATPase_c Histidine ki 99.1 3.7E-10 8.1E-15 104.8 11.9 98 490-635 1-102 (103)
115 PRK15411 rcsA colanic acid cap 99.1 4.8E-10 1E-14 120.6 14.3 113 1000-1130 2-120 (207)
116 PRK10403 transcriptional regul 99.1 9.1E-10 2E-14 117.3 16.3 115 999-1130 7-123 (215)
117 PRK10610 chemotaxis regulatory 99.1 1.7E-09 3.8E-14 103.7 16.7 118 998-1130 5-123 (129)
118 PRK13435 response regulator; P 99.1 8.4E-10 1.8E-14 111.2 15.0 112 998-1130 5-118 (145)
119 PRK15369 two component system 99.1 1.2E-09 2.5E-14 115.7 16.8 116 998-1130 3-120 (211)
120 PRK10651 transcriptional regul 99.1 9.6E-10 2.1E-14 117.4 16.2 115 999-1130 7-123 (216)
121 COG3707 AmiR Response regulato 99.1 4.2E-10 9.2E-15 115.1 11.2 113 998-1128 5-118 (194)
122 PRK14867 DNA topoisomerase VI 99.1 4.5E-10 9.7E-15 136.2 12.9 107 487-640 34-151 (659)
123 PRK03660 anti-sigma F factor; 99.0 1.8E-09 4E-14 109.3 13.1 101 486-640 36-140 (146)
124 PRK09191 two-component respons 99.0 4.3E-09 9.3E-14 117.0 15.8 113 998-1130 137-251 (261)
125 COG3851 UhpB Signal transducti 99.0 4.8E-07 1E-11 99.6 30.1 183 378-637 311-493 (497)
126 PRK10693 response regulator of 99.0 2.8E-09 6E-14 121.6 12.2 86 1027-1129 2-88 (303)
127 COG4564 Signal transduction hi 99.0 1.9E-07 4.1E-12 101.5 24.6 212 350-639 236-448 (459)
128 cd00156 REC Signal receiver do 98.9 2.1E-08 4.6E-13 92.0 13.5 112 1002-1130 1-112 (113)
129 COG4585 Signal transduction hi 98.9 1.7E-06 3.7E-11 101.5 32.2 123 449-638 242-365 (365)
130 COG3920 Signal transduction hi 98.9 8.5E-07 1.8E-11 96.1 26.3 193 369-639 18-216 (221)
131 COG2972 Predicted signal trans 98.8 1.3E-06 2.8E-11 105.4 29.6 185 370-639 259-453 (456)
132 COG0643 CheA Chemotaxis protei 98.8 1E-07 2.2E-12 118.3 19.4 140 446-641 392-576 (716)
133 COG3850 NarQ Signal transducti 98.8 2.1E-06 4.7E-11 99.8 27.6 187 375-637 374-567 (574)
134 KOG0519 Sensory transduction h 98.7 8.7E-08 1.9E-12 121.8 13.9 392 368-876 384-782 (786)
135 PRK15029 arginine decarboxylas 98.7 6.6E-08 1.4E-12 120.5 12.3 107 1000-1123 2-122 (755)
136 PRK04069 serine-protein kinase 98.7 1.5E-07 3.3E-12 97.1 12.3 102 486-641 39-146 (161)
137 COG3279 LytT Response regulato 98.6 1.4E-07 3E-12 103.9 10.5 112 999-1129 2-115 (244)
138 TIGR01924 rsbW_low_gc serine-p 98.4 2E-06 4.4E-11 88.5 12.1 99 487-639 40-144 (159)
139 COG3275 LytS Putative regulato 98.4 7.2E-05 1.6E-09 86.0 23.9 129 441-639 414-552 (557)
140 smart00388 HisKA His Kinase A 98.3 1.8E-06 4E-11 73.5 7.7 63 371-434 3-65 (66)
141 PF14501 HATPase_c_5: GHKL dom 98.3 8.1E-06 1.8E-10 77.2 12.8 94 486-638 2-99 (100)
142 KOG0787 Dehydrogenase kinase [ 98.3 6.2E-05 1.3E-09 84.2 20.2 198 388-639 154-381 (414)
143 PRK11107 hybrid sensory histid 98.2 1.3E-05 2.8E-10 105.5 15.9 117 994-1129 532-648 (919)
144 cd00082 HisKA Histidine Kinase 98.1 1.5E-05 3.3E-10 67.2 8.3 62 370-431 4-65 (65)
145 COG3706 PleD Response regulato 98.0 4.4E-06 9.5E-11 97.6 4.9 89 1023-1130 13-101 (435)
146 TIGR00585 mutl DNA mismatch re 97.8 0.00011 2.4E-09 84.3 11.5 83 489-624 22-114 (312)
147 PF13581 HATPase_c_2: Histidin 97.4 0.0011 2.3E-08 65.2 10.9 93 486-635 28-124 (125)
148 COG1389 DNA topoisomerase VI, 97.4 0.00072 1.6E-08 77.6 9.9 107 487-639 34-151 (538)
149 COG2172 RsbW Anti-sigma regula 96.9 0.007 1.5E-07 61.3 11.1 88 486-625 37-129 (146)
150 PRK10618 phosphotransfer inter 96.7 0.0016 3.5E-08 84.5 6.0 53 994-1065 685-737 (894)
151 smart00448 REC cheY-homologous 96.6 0.011 2.5E-07 45.7 8.1 54 1000-1066 2-55 (55)
152 PF06490 FleQ: Flagellar regul 96.6 0.014 3.1E-07 56.1 9.9 105 1000-1129 1-106 (109)
153 PRK00095 mutL DNA mismatch rep 96.2 0.015 3.4E-07 72.7 9.8 92 489-633 22-124 (617)
154 cd02071 MM_CoA_mut_B12_BD meth 96.2 0.13 2.8E-06 50.6 14.2 111 1001-1128 2-121 (122)
155 PF13589 HATPase_c_3: Histidin 95.6 0.013 2.8E-07 58.9 4.3 63 568-636 35-105 (137)
156 PRK02261 methylaspartate mutas 95.6 0.44 9.6E-06 47.8 15.1 117 997-1130 2-133 (137)
157 TIGR00640 acid_CoA_mut_C methy 93.6 1.7 3.7E-05 43.4 13.7 108 1005-1129 13-125 (132)
158 cd02067 B12-binding B12 bindin 92.5 1.4 3.1E-05 42.7 11.3 94 1005-1116 10-109 (119)
159 PF00072 Response_reg: Respons 92.5 0.69 1.5E-05 43.6 8.9 39 705-743 1-40 (112)
160 PRK15426 putative diguanylate 91.7 2.5 5.5E-05 52.7 15.1 83 149-231 200-292 (570)
161 COG0745 OmpR Response regulato 91.7 0.67 1.4E-05 50.8 8.7 36 704-739 2-37 (229)
162 PF03709 OKR_DC_1_N: Orn/Lys/A 91.4 0.9 2E-05 44.1 8.4 95 1012-1123 7-103 (115)
163 PRK05559 DNA topoisomerase IV 90.9 0.42 9.1E-06 60.0 6.9 86 486-624 34-138 (631)
164 TIGR01055 parE_Gneg DNA topois 89.7 0.42 9E-06 59.9 5.4 47 568-614 63-125 (625)
165 TIGR01059 gyrB DNA gyrase, B s 89.5 0.58 1.3E-05 59.2 6.5 29 486-514 27-58 (654)
166 TIGR01501 MthylAspMutase methy 88.3 9.5 0.00021 38.1 12.8 107 1007-1130 14-131 (134)
167 COG0323 MutL DNA mismatch repa 88.2 0.51 1.1E-05 59.2 4.7 27 568-594 54-80 (638)
168 cd02072 Glm_B12_BD B12 binding 87.8 12 0.00026 37.1 13.0 105 1007-1128 12-127 (128)
169 PRK05218 heat shock protein 90 87.7 1.6 3.4E-05 54.8 8.7 55 568-626 74-144 (613)
170 COG5381 Uncharacterized protei 86.6 1.2 2.7E-05 43.9 5.3 25 492-516 66-90 (184)
171 TIGR03815 CpaE_hom_Actino heli 86.6 2 4.4E-05 49.5 8.2 84 1022-1130 1-85 (322)
172 COG4999 Uncharacterized domain 85.9 3.8 8.3E-05 39.4 7.9 113 994-1127 7-121 (140)
173 COG4566 TtrR Response regulato 83.8 3.6 7.7E-05 43.1 7.3 38 703-740 5-42 (202)
174 PRK14083 HSP90 family protein; 83.3 1.4 3.1E-05 54.9 5.2 21 568-588 64-84 (601)
175 cd04728 ThiG Thiazole synthase 83.0 12 0.00027 40.9 11.4 85 1017-1126 118-219 (248)
176 cd02069 methionine_synthase_B1 82.2 13 0.00029 40.2 11.6 100 999-1115 89-200 (213)
177 PRK05644 gyrB DNA gyrase subun 82.2 2.1 4.5E-05 54.0 6.0 80 486-614 34-132 (638)
178 cd02070 corrinoid_protein_B12- 82.2 17 0.00036 39.0 12.2 99 999-1115 83-190 (201)
179 PF02310 B12-binding: B12 bind 82.0 11 0.00023 36.4 9.9 93 1007-1117 13-112 (121)
180 PRK00208 thiG thiazole synthas 81.9 14 0.00031 40.5 11.4 86 1016-1126 117-219 (250)
181 COG2185 Sbm Methylmalonyl-CoA 80.4 45 0.00098 33.6 13.5 114 998-1127 12-133 (143)
182 COG2204 AtoC Response regulato 79.7 9 0.00019 46.1 9.8 40 703-742 5-44 (464)
183 COG3947 Response regulator con 79.6 10 0.00022 42.3 9.4 111 704-876 2-112 (361)
184 PRK15399 lysine decarboxylase 79.4 8.3 0.00018 48.9 9.9 97 1000-1115 2-104 (713)
185 PRK15400 lysine decarboxylase 73.8 12 0.00027 47.5 9.2 79 1000-1097 2-86 (714)
186 PRK00043 thiE thiamine-phospha 70.4 60 0.0013 34.6 12.7 89 1020-1127 102-204 (212)
187 PRK09426 methylmalonyl-CoA mut 69.3 39 0.00084 43.4 12.3 107 1006-1129 594-705 (714)
188 PRK15347 two component system 68.4 18 0.00039 47.9 9.8 39 702-740 690-728 (921)
189 CHL00162 thiG thiamin biosynth 66.4 1.1E+02 0.0024 33.9 13.2 95 1014-1128 129-235 (267)
190 PRK01130 N-acetylmannosamine-6 66.2 67 0.0015 34.8 12.1 81 1016-1115 112-201 (221)
191 smart00433 TOP2c Topoisomerase 65.2 4.1 8.9E-05 51.1 2.6 44 568-611 34-93 (594)
192 PRK00278 trpC indole-3-glycero 65.0 1.6E+02 0.0034 33.0 14.8 108 1002-1127 139-256 (260)
193 PTZ00272 heat shock protein 83 64.6 6.7 0.00014 49.8 4.3 20 568-587 73-92 (701)
194 PF05690 ThiG: Thiazole biosyn 64.6 66 0.0014 35.2 11.0 83 1013-1115 114-203 (247)
195 COG4567 Response regulator con 64.2 28 0.00062 35.3 7.6 41 704-744 11-51 (182)
196 TIGR02370 pyl_corrinoid methyl 63.7 52 0.0011 35.1 10.3 93 1005-1115 95-192 (197)
197 COG0512 PabA Anthranilate/para 63.0 25 0.00053 37.2 7.3 92 999-1112 2-95 (191)
198 PF10669 Phage_Gp23: Protein g 61.9 1.4E+02 0.0029 27.8 12.6 14 336-349 37-50 (121)
199 PLN03029 type-a response regul 61.8 38 0.00082 36.8 9.1 42 701-742 7-48 (222)
200 cd04729 NanE N-acetylmannosami 61.7 1E+02 0.0022 33.4 12.4 79 1018-1115 118-205 (219)
201 PRK05458 guanosine 5'-monophos 61.5 1.2E+02 0.0026 35.1 13.3 97 1000-1115 113-229 (326)
202 COG4565 CitB Response regulato 61.2 38 0.00082 36.4 8.4 26 851-876 91-116 (224)
203 PRK10841 hybrid sensory kinase 61.2 26 0.00056 46.6 9.0 42 701-742 800-841 (924)
204 COG0326 HtpG Molecular chapero 61.1 9.8 0.00021 47.0 4.6 17 568-584 75-91 (623)
205 PRK10558 alpha-dehydro-beta-de 61.0 84 0.0018 35.1 11.7 100 1014-1129 10-112 (256)
206 TIGR02956 TMAO_torS TMAO reduc 60.3 24 0.00053 47.0 8.7 42 701-742 701-742 (968)
207 PRK11466 hybrid sensory histid 60.0 34 0.00074 45.3 10.0 41 700-740 679-719 (914)
208 cd00452 KDPG_aldolase KDPG and 59.2 65 0.0014 34.1 10.1 75 1020-1115 95-170 (190)
209 TIGR00343 pyridoxal 5'-phospha 58.8 54 0.0012 36.9 9.4 54 1069-1127 184-244 (287)
210 PRK14939 gyrB DNA gyrase subun 57.3 11 0.00023 48.4 4.2 27 488-514 36-65 (756)
211 TIGR03239 GarL 2-dehydro-3-deo 56.7 1.2E+02 0.0027 33.6 12.1 85 1029-1129 20-105 (249)
212 TIGR01334 modD putative molybd 56.3 54 0.0012 37.0 9.1 71 1024-1114 191-261 (277)
213 PF10087 DUF2325: Uncharacteri 56.0 89 0.0019 29.1 9.3 90 1000-1106 1-93 (97)
214 PRK14974 cell division protein 55.1 1.3E+02 0.0028 35.1 12.2 103 998-1115 168-286 (336)
215 KOG1977 DNA mismatch repair pr 54.8 16 0.00034 45.1 4.8 57 489-594 21-77 (1142)
216 PRK10128 2-keto-3-deoxy-L-rham 54.7 1.4E+02 0.0031 33.6 12.1 84 1029-1128 26-110 (267)
217 TIGR00736 nifR3_rel_arch TIM-b 54.2 1.3E+02 0.0027 33.2 11.4 57 1055-1115 161-219 (231)
218 PRK08385 nicotinate-nucleotide 54.1 1E+02 0.0022 34.9 10.8 95 1001-1114 157-257 (278)
219 TIGR02311 HpaI 2,4-dihydroxyhe 54.0 1.4E+02 0.003 33.2 12.0 86 1029-1130 20-106 (249)
220 PRK11091 aerobic respiration c 54.0 34 0.00074 44.5 8.4 41 702-742 525-565 (779)
221 cd04726 KGPDC_HPS 3-Keto-L-gul 53.8 1.9E+02 0.0041 30.5 12.7 84 1012-1115 93-185 (202)
222 cd04727 pdxS PdxS is a subunit 53.3 55 0.0012 36.8 8.4 43 1068-1115 180-224 (283)
223 PRK07114 keto-hydroxyglutarate 53.1 1E+02 0.0022 33.7 10.4 99 1016-1128 10-109 (222)
224 TIGR00007 phosphoribosylformim 52.6 1.3E+02 0.0029 32.6 11.5 56 1055-1115 158-217 (230)
225 PRK11889 flhF flagellar biosyn 52.1 1.4E+02 0.0031 35.5 11.9 108 997-1115 268-384 (436)
226 TIGR03151 enACPred_II putative 51.8 1.2E+02 0.0026 34.8 11.4 83 1014-1115 101-189 (307)
227 cd05212 NAD_bind_m-THF_DH_Cycl 51.7 49 0.0011 33.4 7.2 56 994-1067 24-83 (140)
228 PRK05718 keto-hydroxyglutarate 51.5 1.2E+02 0.0026 32.9 10.5 95 1016-1128 10-105 (212)
229 PRK09468 ompR osmolarity respo 51.4 80 0.0017 33.9 9.6 37 702-738 5-41 (239)
230 COG4753 Response regulator con 51.0 15 0.00032 44.3 3.9 22 855-876 97-118 (475)
231 TIGR00693 thiE thiamine-phosph 50.8 1.1E+02 0.0023 32.4 10.1 71 1025-1114 100-178 (196)
232 PF10883 DUF2681: Protein of u 50.8 1E+02 0.0022 28.5 8.2 27 325-351 10-36 (87)
233 cd00564 TMP_TenI Thiamine mono 49.8 1.2E+02 0.0027 31.5 10.4 74 1022-1115 95-177 (196)
234 cd02068 radical_SAM_B12_BD B12 49.7 1.4E+02 0.0029 29.2 10.0 90 1009-1116 3-96 (127)
235 PTZ00130 heat shock protein 90 49.0 13 0.00029 47.5 3.2 19 568-586 136-154 (814)
236 PRK11173 two-component respons 48.5 77 0.0017 34.1 8.8 38 703-740 4-41 (237)
237 PF07568 HisKA_2: Histidine ki 48.2 1.3E+02 0.0029 26.7 8.7 72 377-458 2-73 (76)
238 PRK12724 flagellar biosynthesi 48.1 1.7E+02 0.0038 35.1 12.0 104 997-1115 251-366 (432)
239 cd00331 IGPS Indole-3-glycerol 48.1 2.6E+02 0.0057 30.0 12.8 78 1019-1114 118-199 (217)
240 PLN03237 DNA topoisomerase 2; 48.0 29 0.00064 47.2 6.2 51 568-618 112-178 (1465)
241 PRK13111 trpA tryptophan synth 47.8 48 0.001 37.0 7.1 56 1069-1128 75-136 (258)
242 PRK13837 two-component VirA-li 47.1 1.1E+02 0.0024 40.2 11.5 42 701-742 696-737 (828)
243 KOG1979 DNA mismatch repair pr 47.0 23 0.00051 43.0 4.6 27 568-594 58-84 (694)
244 PF02254 TrkA_N: TrkA-N domain 47.0 2.2E+02 0.0048 26.8 10.9 93 999-1115 22-115 (116)
245 TIGR01163 rpe ribulose-phospha 47.0 1.7E+02 0.0037 31.0 11.1 87 1014-1115 96-192 (210)
246 PRK13125 trpA tryptophan synth 46.8 2.1E+02 0.0046 31.6 12.0 89 1011-1117 118-215 (244)
247 cd02065 B12-binding_like B12 b 46.5 1E+02 0.0022 29.6 8.5 76 1005-1096 10-89 (125)
248 PRK06731 flhF flagellar biosyn 45.6 2E+02 0.0043 32.4 11.6 107 998-1115 103-218 (270)
249 PRK10816 DNA-binding transcrip 45.4 1E+02 0.0023 32.5 9.2 36 704-739 2-37 (223)
250 PRK10161 transcriptional regul 45.0 1.1E+02 0.0024 32.5 9.4 36 703-738 3-38 (229)
251 PRK05703 flhF flagellar biosyn 44.9 1.9E+02 0.0042 34.8 12.0 105 998-1116 251-366 (424)
252 PRK05458 guanosine 5'-monophos 44.7 65 0.0014 37.3 7.6 54 1056-1114 112-166 (326)
253 PRK11083 DNA-binding response 44.4 1.4E+02 0.0031 31.3 10.1 34 704-737 5-38 (228)
254 PRK10701 DNA-binding transcrip 44.1 1.2E+02 0.0025 32.7 9.4 35 704-738 3-37 (240)
255 cd00429 RPE Ribulose-5-phospha 44.0 2E+02 0.0042 30.5 11.0 59 1056-1115 128-193 (211)
256 PF01408 GFO_IDH_MocA: Oxidore 43.2 1.9E+02 0.0041 27.5 9.7 34 1096-1129 73-108 (120)
257 PRK09836 DNA-binding transcrip 43.0 1.2E+02 0.0027 32.0 9.3 35 704-738 2-36 (227)
258 PRK06543 nicotinate-nucleotide 43.0 1.9E+02 0.004 32.8 10.7 90 1001-1113 162-262 (281)
259 TIGR00064 ftsY signal recognit 42.8 2.3E+02 0.005 31.9 11.6 103 997-1114 99-223 (272)
260 TIGR00735 hisF imidazoleglycer 42.7 2.2E+02 0.0047 31.7 11.4 54 1071-1129 188-248 (254)
261 PLN02274 inosine-5'-monophosph 42.6 3E+02 0.0066 34.0 13.4 99 998-1115 260-379 (505)
262 PRK12726 flagellar biosynthesi 42.5 2.5E+02 0.0054 33.4 11.9 107 998-1115 234-349 (407)
263 PRK10643 DNA-binding transcrip 42.1 1.4E+02 0.003 31.2 9.5 35 704-738 2-36 (222)
264 PRK10955 DNA-binding transcrip 41.9 1E+02 0.0022 32.6 8.5 35 704-738 3-37 (232)
265 PRK06552 keto-hydroxyglutarate 41.8 2.1E+02 0.0046 31.0 10.6 98 1016-1128 8-106 (213)
266 PRK07107 inosine 5-monophospha 41.5 1.4E+02 0.0029 36.9 10.2 104 998-1115 254-380 (502)
267 PRK00748 1-(5-phosphoribosyl)- 41.3 1.1E+02 0.0025 33.2 8.7 55 1056-1115 160-219 (233)
268 PRK10529 DNA-binding transcrip 41.2 1.2E+02 0.0026 32.0 8.9 35 704-738 3-37 (225)
269 PTZ00314 inosine-5'-monophosph 41.2 2.2E+02 0.0048 35.1 11.9 99 998-1115 253-372 (495)
270 PRK07428 nicotinate-nucleotide 41.1 1E+02 0.0022 35.1 8.3 70 1025-1114 200-269 (288)
271 TIGR02154 PhoB phosphate regul 41.1 1.7E+02 0.0037 30.6 10.0 37 703-739 3-39 (226)
272 PF02581 TMP-TENI: Thiamine mo 40.8 1.4E+02 0.0031 31.1 9.1 81 1014-1114 88-175 (180)
273 COG2022 ThiG Uncharacterized e 40.8 2.1E+02 0.0045 31.4 9.9 83 1013-1115 121-210 (262)
274 TIGR01182 eda Entner-Doudoroff 40.8 1.9E+02 0.0041 31.2 10.0 94 1017-1128 4-98 (204)
275 PRK07896 nicotinate-nucleotide 40.5 1.1E+02 0.0024 34.7 8.5 71 1024-1114 202-272 (289)
276 cd04723 HisA_HisF Phosphoribos 39.8 1.2E+02 0.0027 33.2 8.7 70 1028-1115 145-217 (233)
277 PRK05848 nicotinate-nucleotide 39.7 3.1E+02 0.0066 31.0 11.8 83 1013-1115 171-256 (273)
278 PRK10046 dpiA two-component re 39.2 1.7E+02 0.0036 31.5 9.6 37 703-739 5-43 (225)
279 PRK07649 para-aminobenzoate/an 39.1 40 0.00087 35.9 4.6 74 1001-1094 2-79 (195)
280 COG3437 Response regulator con 38.7 1.3E+02 0.0028 35.0 8.6 38 701-738 13-50 (360)
281 PF03602 Cons_hypoth95: Conser 38.6 96 0.0021 32.7 7.3 68 999-1079 66-139 (183)
282 KOG1978 DNA mismatch repair pr 38.5 34 0.00074 42.5 4.3 26 568-593 51-76 (672)
283 TIGR00262 trpA tryptophan synt 38.3 89 0.0019 34.9 7.3 24 1100-1123 106-129 (256)
284 PRK09191 two-component respons 38.2 1.4E+02 0.0029 32.7 8.9 34 703-736 138-172 (261)
285 PRK06015 keto-hydroxyglutarate 37.7 1.9E+02 0.0042 31.0 9.4 63 1060-1128 32-94 (201)
286 cd04730 NPD_like 2-Nitropropan 37.6 4.2E+02 0.0091 28.7 12.5 81 1017-1116 97-185 (236)
287 PRK01362 putative translaldola 37.2 1.8E+02 0.0039 31.6 9.2 88 1014-1117 93-185 (214)
288 PRK13856 two-component respons 37.1 2.1E+02 0.0046 30.7 10.1 36 704-739 3-38 (241)
289 TIGR03787 marine_sort_RR prote 36.9 1.9E+02 0.0042 30.5 9.6 35 704-738 2-36 (227)
290 COG0157 NadC Nicotinate-nucleo 36.7 2E+02 0.0043 32.4 9.4 92 1001-1113 161-259 (280)
291 PF14689 SPOB_a: Sensor_kinase 36.5 59 0.0013 27.8 4.3 39 376-419 18-56 (62)
292 TIGR01425 SRP54_euk signal rec 36.2 2E+02 0.0043 34.7 10.1 105 997-1114 127-245 (429)
293 CHL00148 orf27 Ycf27; Reviewed 36.0 2.3E+02 0.0049 30.1 10.1 36 703-738 7-42 (240)
294 PRK05567 inosine 5'-monophosph 36.0 4.5E+02 0.0098 32.3 13.6 101 998-1115 240-359 (486)
295 PRK12723 flagellar biosynthesi 35.1 3.5E+02 0.0076 32.2 11.9 105 997-1114 205-318 (388)
296 PF01596 Methyltransf_3: O-met 35.0 1.4E+02 0.0031 32.1 8.0 58 998-1064 70-130 (205)
297 TIGR01037 pyrD_sub1_fam dihydr 35.0 3.6E+02 0.0079 30.6 11.9 54 1071-1129 223-282 (300)
298 PRK13435 response regulator; P 34.9 1.8E+02 0.0039 28.5 8.4 35 703-737 6-41 (145)
299 PF02743 Cache_1: Cache domain 34.8 33 0.00072 30.5 2.7 52 180-231 13-69 (81)
300 PRK06096 molybdenum transport 34.8 1.4E+02 0.0031 33.8 8.2 71 1024-1114 192-262 (284)
301 PRK09140 2-dehydro-3-deoxy-6-p 34.3 3E+02 0.0065 29.7 10.3 96 1016-1128 5-101 (206)
302 PF04131 NanE: Putative N-acet 34.1 4.6E+02 0.0099 28.0 11.1 79 1017-1115 87-172 (192)
303 PF01729 QRPTase_C: Quinolinat 34.0 1.3E+02 0.0028 31.5 7.2 71 1025-1115 84-154 (169)
304 PRK06843 inosine 5-monophospha 33.9 4.2E+02 0.0091 31.7 12.2 101 998-1115 165-284 (404)
305 cd01568 QPRTase_NadC Quinolina 33.8 1.6E+02 0.0035 33.1 8.5 69 1025-1114 185-253 (269)
306 PLN02591 tryptophan synthase 33.7 1.1E+02 0.0024 34.1 7.0 55 1069-1128 65-125 (250)
307 PRK13587 1-(5-phosphoribosyl)- 33.1 2.1E+02 0.0045 31.5 9.1 54 1057-1115 164-220 (234)
308 cd04724 Tryptophan_synthase_al 32.6 1.4E+02 0.003 33.0 7.6 54 1069-1127 63-122 (242)
309 PRK15115 response regulator Gl 32.6 1.8E+02 0.0038 35.1 9.3 37 703-739 6-42 (444)
310 PRK11840 bifunctional sulfur c 32.4 4.8E+02 0.01 30.2 11.8 101 1006-1127 182-294 (326)
311 PRK10336 DNA-binding transcrip 32.2 2.5E+02 0.0053 29.3 9.4 35 704-738 2-36 (219)
312 TIGR01302 IMP_dehydrog inosine 32.0 4.7E+02 0.01 31.7 12.7 99 998-1115 236-355 (450)
313 PRK02083 imidazole glycerol ph 31.9 4.1E+02 0.0088 29.4 11.4 53 1071-1128 186-245 (253)
314 TIGR01058 parE_Gpos DNA topois 31.7 37 0.0008 43.0 3.3 47 568-614 67-129 (637)
315 PRK07695 transcriptional regul 31.6 2.5E+02 0.0055 29.8 9.3 39 1069-1113 136-174 (201)
316 COG4122 Predicted O-methyltran 31.3 1.3E+02 0.0029 32.7 7.0 57 1000-1067 86-144 (219)
317 cd00381 IMPDH IMPDH: The catal 31.1 5.2E+02 0.011 29.9 12.3 101 998-1115 106-225 (325)
318 PRK10766 DNA-binding transcrip 30.8 2.6E+02 0.0057 29.3 9.4 36 703-738 3-38 (221)
319 cd01572 QPRTase Quinolinate ph 30.5 4E+02 0.0086 30.0 10.9 92 1001-1115 155-253 (268)
320 PRK10365 transcriptional regul 30.4 1.8E+02 0.0038 34.9 8.8 37 703-739 6-42 (441)
321 PRK09016 quinolinate phosphori 30.4 1.8E+02 0.004 33.1 8.2 68 1024-1114 211-278 (296)
322 PRK08883 ribulose-phosphate 3- 30.3 1.8E+02 0.0039 31.7 7.9 89 1015-1115 99-194 (220)
323 PRK04180 pyridoxal biosynthesi 30.2 1.2E+02 0.0025 34.4 6.4 54 1069-1127 190-250 (293)
324 PF07652 Flavi_DEAD: Flaviviru 30.0 2.2E+02 0.0048 29.0 7.7 88 997-1096 32-135 (148)
325 KOG1562 Spermidine synthase [A 29.9 1.4E+02 0.003 33.9 6.8 62 1000-1074 147-214 (337)
326 TIGR00566 trpG_papA glutamine 29.5 1.2E+02 0.0027 31.9 6.4 76 1001-1094 2-79 (188)
327 PRK14722 flhF flagellar biosyn 29.5 3.7E+02 0.0081 31.8 10.8 92 999-1103 168-263 (374)
328 PRK06774 para-aminobenzoate sy 29.5 82 0.0018 33.3 5.0 76 1001-1094 2-79 (191)
329 PRK05637 anthranilate synthase 29.0 1.6E+02 0.0035 31.7 7.3 77 999-1094 2-80 (208)
330 PRK06559 nicotinate-nucleotide 28.8 3.9E+02 0.0084 30.5 10.3 90 1001-1113 170-266 (290)
331 TIGR01302 IMP_dehydrog inosine 28.6 1.5E+02 0.0032 36.0 7.7 55 1055-1114 236-291 (450)
332 PRK12704 phosphodiesterase; Pr 28.6 49 0.0011 40.9 3.6 41 1089-1129 251-293 (520)
333 PRK06895 putative anthranilate 28.6 1.4E+02 0.0031 31.4 6.7 32 999-1030 2-33 (190)
334 PF00448 SRP54: SRP54-type pro 28.4 1.4E+02 0.0031 31.8 6.7 93 1009-1116 43-149 (196)
335 TIGR01306 GMP_reduct_2 guanosi 28.4 8.3E+02 0.018 28.3 13.1 97 1000-1115 110-226 (321)
336 PRK03958 tRNA 2'-O-methylase; 28.3 5.8E+02 0.013 26.8 10.7 59 998-1067 31-91 (176)
337 PRK14084 two-component respons 28.3 3.1E+02 0.0068 29.6 9.6 35 704-738 2-38 (246)
338 COG0813 DeoD Purine-nucleoside 28.2 67 0.0015 34.7 3.9 25 482-506 18-42 (236)
339 PLN02274 inosine-5'-monophosph 28.2 2.1E+02 0.0045 35.4 8.7 55 1055-1115 260-316 (505)
340 PRK13566 anthranilate synthase 28.1 1.7E+02 0.0038 37.7 8.4 83 994-1095 522-606 (720)
341 TIGR01818 ntrC nitrogen regula 27.9 2.4E+02 0.0052 34.1 9.4 35 705-739 1-35 (463)
342 PF06305 DUF1049: Protein of u 27.9 2.6E+02 0.0056 24.0 7.1 14 320-333 24-37 (68)
343 PRK09483 response regulator; P 27.9 2.7E+02 0.0058 29.0 8.8 35 704-738 3-39 (217)
344 PF13974 YebO: YebO-like prote 27.8 2.1E+02 0.0046 26.0 6.3 12 344-355 26-37 (80)
345 PRK06978 nicotinate-nucleotide 27.8 2E+02 0.0043 32.8 7.8 66 1025-1113 209-274 (294)
346 PRK00771 signal recognition pa 27.2 4E+02 0.0086 32.3 10.7 91 997-1099 122-219 (437)
347 cd02809 alpha_hydroxyacid_oxid 27.1 6.7E+02 0.014 28.5 12.3 86 1013-1115 163-255 (299)
348 PRK09958 DNA-binding transcrip 27.1 3.4E+02 0.0073 28.0 9.3 35 704-738 2-37 (204)
349 TIGR00734 hisAF_rel hisA/hisF 27.1 3E+02 0.0065 30.0 9.0 55 1056-1115 155-212 (221)
350 PRK08007 para-aminobenzoate sy 27.0 90 0.0019 33.0 4.8 91 1001-1113 2-94 (187)
351 PRK10923 glnG nitrogen regulat 27.0 3.1E+02 0.0068 33.2 10.2 37 703-739 4-40 (469)
352 PRK11517 transcriptional regul 26.9 3.3E+02 0.0071 28.5 9.3 35 704-738 2-36 (223)
353 TIGR02082 metH 5-methyltetrahy 26.8 4.7E+02 0.01 35.9 12.3 100 999-1115 733-844 (1178)
354 PRK13585 1-(5-phosphoribosyl)- 26.8 6.1E+02 0.013 27.6 11.6 67 1056-1127 163-239 (241)
355 COG1856 Uncharacterized homolo 26.7 4.2E+02 0.009 29.0 9.3 101 1003-1119 118-254 (275)
356 PHA02569 39 DNA topoisomerase 26.6 42 0.00092 42.2 2.5 48 568-615 80-145 (602)
357 PRK10416 signal recognition pa 26.6 5.1E+02 0.011 29.9 11.1 105 997-1114 141-265 (318)
358 cd02940 DHPD_FMN Dihydropyrimi 26.6 3.7E+02 0.008 30.6 10.0 41 1071-1114 239-279 (299)
359 KOG2335 tRNA-dihydrouridine sy 26.5 4.4E+02 0.0095 30.8 10.2 41 1071-1115 191-232 (358)
360 PF01081 Aldolase: KDPG and KH 26.5 2.1E+02 0.0046 30.6 7.5 95 1016-1128 3-98 (196)
361 cd04722 TIM_phosphate_binding 25.9 4.1E+02 0.0089 27.1 9.7 56 1055-1115 136-198 (200)
362 PRK14723 flhF flagellar biosyn 25.8 6.2E+02 0.013 32.9 12.5 103 999-1115 216-330 (767)
363 COG0352 ThiE Thiamine monophos 25.6 3.3E+02 0.0071 29.5 8.7 67 1027-1113 110-183 (211)
364 PRK06106 nicotinate-nucleotide 25.5 2.5E+02 0.0053 31.9 8.1 66 1025-1113 198-263 (281)
365 COG0742 N6-adenine-specific me 25.5 1.8E+02 0.0038 31.0 6.4 53 999-1063 67-122 (187)
366 PF11212 DUF2999: Protein of u 25.4 78 0.0017 27.8 3.1 53 382-438 27-80 (82)
367 cd04732 HisA HisA. Phosphorib 25.3 6.5E+02 0.014 27.1 11.4 53 1058-1115 163-218 (234)
368 PRK11361 acetoacetate metaboli 25.0 3.4E+02 0.0074 32.6 10.0 38 702-739 4-41 (457)
369 TIGR01304 IMP_DH_rel_2 IMP deh 25.0 3.1E+02 0.0068 32.4 9.1 85 1014-1115 180-283 (369)
370 PRK04302 triosephosphate isome 25.0 8.2E+02 0.018 26.4 12.0 40 1072-1115 162-201 (223)
371 PRK09959 hybrid sensory histid 24.9 1.9E+02 0.0041 39.8 8.6 38 702-739 958-995 (1197)
372 PRK08649 inosine 5-monophospha 24.8 8.2E+02 0.018 28.9 12.5 54 1055-1115 154-214 (368)
373 PRK07259 dihydroorotate dehydr 24.7 6.5E+02 0.014 28.5 11.7 53 1070-1127 222-280 (301)
374 PRK10430 DNA-binding transcrip 24.6 3.1E+02 0.0067 29.7 8.7 33 704-736 3-37 (239)
375 PRK10710 DNA-binding transcrip 24.6 5.1E+02 0.011 27.3 10.4 35 704-738 12-46 (240)
376 TIGR00875 fsa_talC_mipB fructo 24.5 3.4E+02 0.0075 29.4 8.7 85 1014-1113 93-182 (213)
377 cd01573 modD_like ModD; Quinol 24.3 3.8E+02 0.0082 30.2 9.3 71 1025-1115 187-257 (272)
378 PRK06843 inosine 5-monophospha 24.3 2.9E+02 0.0063 33.0 8.7 55 1055-1114 165-220 (404)
379 cd04731 HisF The cyclase subun 24.1 3.6E+02 0.0078 29.5 9.1 53 1058-1115 44-99 (243)
380 PRK10742 putative methyltransf 24.1 4.8E+02 0.01 29.1 9.7 97 998-1116 110-218 (250)
381 PF08066 PMC2NT: PMC2NT (NUC01 24.1 3E+02 0.0065 25.5 7.1 55 408-463 26-80 (91)
382 PRK00811 spermidine synthase; 24.0 2.8E+02 0.0061 31.4 8.4 68 999-1080 101-180 (283)
383 TIGR01387 cztR_silR_copR heavy 23.9 3.1E+02 0.0068 28.4 8.4 33 706-738 2-34 (218)
384 PRK07455 keto-hydroxyglutarate 23.7 3.5E+02 0.0075 28.6 8.4 66 1028-1113 112-177 (187)
385 PRK05742 nicotinate-nucleotide 23.6 4E+02 0.0086 30.2 9.2 68 1025-1115 193-260 (277)
386 PF14097 SpoVAE: Stage V sporu 23.5 5.7E+02 0.012 26.7 9.3 79 1001-1097 3-95 (180)
387 cd00331 IGPS Indole-3-glycerol 23.5 3E+02 0.0064 29.6 8.1 54 1069-1127 59-114 (217)
388 TIGR00959 ffh signal recogniti 23.4 7.2E+02 0.016 30.1 11.9 102 997-1114 127-245 (428)
389 PLN02871 UDP-sulfoquinovose:DA 23.3 5.7E+02 0.012 30.9 11.5 105 998-1130 290-397 (465)
390 PLN02335 anthranilate synthase 23.3 1.8E+02 0.0038 31.8 6.3 79 998-1094 18-98 (222)
391 PLN02716 nicotinate-nucleotide 23.2 2.8E+02 0.006 31.9 7.9 76 1025-1113 207-287 (308)
392 PRK01130 N-acetylmannosamine-6 23.2 2.3E+02 0.0049 30.6 7.2 54 1071-1129 45-116 (221)
393 TIGR00078 nadC nicotinate-nucl 23.2 3.1E+02 0.0067 30.8 8.3 68 1024-1114 181-248 (265)
394 PF03328 HpcH_HpaI: HpcH/HpaI 23.2 6.3E+02 0.014 27.2 10.7 72 1055-1129 21-105 (221)
395 PTZ00314 inosine-5'-monophosph 23.0 1.9E+02 0.004 35.7 7.1 55 1055-1114 253-308 (495)
396 CHL00200 trpA tryptophan synth 22.4 2.2E+02 0.0047 32.0 6.9 50 1070-1124 79-134 (263)
397 PRK11697 putative two-componen 22.2 4.2E+02 0.0092 28.3 9.2 23 704-726 3-25 (238)
398 cd06346 PBP1_ABC_ligand_bindin 22.1 6E+02 0.013 28.6 10.8 79 1002-1099 142-230 (312)
399 PRK05581 ribulose-phosphate 3- 22.0 9.7E+02 0.021 25.4 13.1 71 1056-1128 132-215 (220)
400 PRK10840 transcriptional regul 21.9 4.3E+02 0.0093 27.9 9.0 36 703-738 4-41 (216)
401 PRK03659 glutathione-regulated 21.7 5.1E+02 0.011 32.8 10.8 95 998-1116 423-518 (601)
402 PRK09490 metH B12-dependent me 21.5 5.3E+02 0.012 35.4 11.2 100 999-1115 752-863 (1229)
403 cd06338 PBP1_ABC_ligand_bindin 21.2 8.2E+02 0.018 27.8 11.8 79 999-1096 142-231 (345)
404 PRK10669 putative cation:proto 21.1 4.5E+02 0.0098 32.8 10.2 94 998-1115 440-534 (558)
405 cd00956 Transaldolase_FSA Tran 21.1 4.9E+02 0.011 28.1 9.1 88 1014-1114 93-183 (211)
406 COG0157 NadC Nicotinate-nucleo 21.0 3.3E+02 0.0072 30.7 7.7 54 1071-1129 175-228 (280)
407 PRK10415 tRNA-dihydrouridine s 21.0 6.3E+02 0.014 29.1 10.6 50 1070-1124 182-238 (321)
408 PRK05567 inosine 5'-monophosph 21.0 2.8E+02 0.0061 34.1 8.1 55 1055-1114 240-295 (486)
409 cd04731 HisF The cyclase subun 20.9 5.3E+02 0.011 28.2 9.6 53 1071-1128 182-241 (243)
410 TIGR02026 BchE magnesium-proto 20.9 6.7E+02 0.015 30.8 11.4 102 1008-1127 22-132 (497)
411 PRK04128 1-(5-phosphoribosyl)- 20.9 7.3E+02 0.016 27.1 10.5 82 1030-1130 31-118 (228)
412 PRK01033 imidazole glycerol ph 20.9 4.8E+02 0.01 29.0 9.3 53 1057-1114 168-224 (258)
413 COG3105 Uncharacterized protei 20.9 8.4E+02 0.018 24.3 9.6 11 409-419 79-89 (138)
414 KOG4175 Tryptophan synthase al 20.7 1.8E+02 0.0039 31.0 5.2 37 1086-1122 94-136 (268)
415 PF11694 DUF3290: Protein of u 20.5 4.6E+02 0.01 26.8 8.1 18 371-388 82-99 (149)
416 PF03060 NMO: Nitronate monoox 20.4 8.6E+02 0.019 28.1 11.6 81 1016-1115 130-218 (330)
417 PF04131 NanE: Putative N-acet 20.3 2.5E+02 0.0054 29.9 6.3 69 1022-1113 45-116 (192)
418 cd01948 EAL EAL domain. This d 20.2 3.6E+02 0.0079 28.8 8.1 92 1013-1120 136-238 (240)
419 PF03102 NeuB: NeuB family; I 20.1 3.3E+02 0.0072 30.2 7.6 83 1010-1113 57-143 (241)
420 PRK04457 spermidine synthase; 20.1 7.8E+02 0.017 27.4 10.8 69 998-1080 90-166 (262)
No 1
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=1.3e-54 Score=557.17 Aligned_cols=474 Identities=26% Similarity=0.399 Sum_probs=345.7
Q ss_pred HHHHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccee
Q 042553 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE 441 (1131)
Q Consensus 362 ~ae~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~ 441 (1131)
+++++++.|+.|+++|||||||||++|.|+++++... ...++.+++++.|..++++|..+|++|||++|++++++.++.
T Consensus 439 ~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~-~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~~~l~~ 517 (924)
T PRK10841 439 AAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK-ELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEP 517 (924)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeee
Confidence 3455667788999999999999999999999987543 344677889999999999999999999999999999999999
Q ss_pred eeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCC
Q 042553 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521 (1131)
Q Consensus 442 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~ 521 (1131)
++|++.+++++++..+.+.+..|++.+.++.++... ..+.+|+.+|+|||.|||+||+|||+.|.|.|.+...
T Consensus 518 ~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~---~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~---- 590 (924)
T PRK10841 518 REFSPREVINHITANYLPLVVKKRLGLYCFIEPDVP---VALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD---- 590 (924)
T ss_pred EEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCC---cEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe----
Confidence 999999999999999999999999999877654322 3589999999999999999999999999888876431
Q ss_pred CCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC----CC
Q 042553 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE----GE 597 (1131)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~----~~ 597 (1131)
...+.|+|.|||+||+++.++++|+||||.+. ..
T Consensus 591 ------------------------------------------~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~ 628 (924)
T PRK10841 591 ------------------------------------------GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNF 628 (924)
T ss_pred ------------------------------------------CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCC
Confidence 12578999999999999999999999999764 23
Q ss_pred CCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccccccccCCCCCcccccccCCCCCCCccccccccccccC
Q 042553 598 GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKA 677 (1131)
Q Consensus 598 ~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1131)
+|+||||+|||+|+++|||+|+++|.+ |.||+|+|.+|+........ .
T Consensus 629 ~GtGLGL~I~k~lv~~~gG~I~v~S~~--g~Gt~F~i~LP~~~~~~~~~------------------------------~ 676 (924)
T PRK10841 629 QGTGLGLAICEKLINMMDGDISVDSEP--GMGSQFTIRIPLYGAQYPQK------------------------------K 676 (924)
T ss_pred CCeehhHHHHHHHHHHCCCEEEEEEcC--CCcEEEEEEEECCccccccc------------------------------c
Confidence 699999999999999999999999875 46999999998752110000 0
Q ss_pred CCCCccccCCCCccccCCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHHhhhcCCCccccCC
Q 042553 678 PSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHS 757 (1131)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 757 (1131)
+ .....+.++.+..++......+..++..+|+.+........ .
T Consensus 677 ~------------------~~~~~g~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~~~----------------~--- 719 (924)
T PRK10841 677 G------------------VEGLQGKRCWLAVRNASLEQFLETLLQRSGIQVQRYEGQEP----------------T--- 719 (924)
T ss_pred c------------------CcccCCCEEEEEcCCHHHHHHHHHHHHHCCCeEEEcccccC----------------C---
Confidence 0 01234667888889999999999999999998865431100 0
Q ss_pred CCCCCCCCcCCCCccCCcccccccccccchhhhccccccCCCceEEEEecCCCcchHHHHHHHHHHhhhcccceeEEEcc
Q 042553 758 SLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLD 837 (1131)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vid~~~~~~~~~~~~~~~~~~~~~~~~~vv~l~ 837 (1131)
.. .+++.|............+ .+. .
T Consensus 720 ---~~---------------------------------------d~~i~d~~~~~~~~~~~~~-~~~------------~ 744 (924)
T PRK10841 720 ---PE---------------------------------------DVLITDDPVQKKWQGRAVI-TFC------------R 744 (924)
T ss_pred ---cC---------------------------------------cEEEEcCccccccchhhhh-hhh------------h
Confidence 00 0000110000000000000 000 0
Q ss_pred CCCccccccCCCccccCCCCCccccccccchhHHHHHhhcCccCCcccccccccccccCCCCCcCCCcccCCcCcccccc
Q 042553 838 KPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRH 917 (1131)
Q Consensus 838 ~~~~~~i~~~~l~~~~~~~~~~~l~kP~~~s~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1131)
.+... ... ......+.+|.....+...+..+......
T Consensus 745 ~~~~~-------~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---------------------------------- 781 (924)
T PRK10841 745 RHIGI-------PLE--IAPGEWVHSTATPHELPALLARIYRIELE---------------------------------- 781 (924)
T ss_pred ccccC-------hhh--cccCceeeccCChHHHHHHHHHHhhcccc----------------------------------
Confidence 00000 000 00011122333333333332211000000
Q ss_pred cccccCCCCccccccccCCcchhhhhcCCCCCCCCCccCCCCcccccccCCCCCCCCcceeecccccccccccccCCCCC
Q 042553 918 EIQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLR 997 (1131)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 997 (1131)
.+. .+.. .+ ..........
T Consensus 782 -----------------~~~-------------~~~~--~~-----------------------------~~~~~~~~~~ 800 (924)
T PRK10841 782 -----------------SDD-------------SANA--LP-----------------------------STDKAVSDND 800 (924)
T ss_pred -----------------ccc-------------cccc--cc-----------------------------ccccccccCC
Confidence 000 0000 00 0000011123
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
+.+||||||++.++..+..+|++.||.|..|.||++|++.+.+. +||+||||++||+|||++++++|
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~-------------~~DlVl~D~~mP~mdG~el~~~i 867 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN-------------HIDIVLTDVNMPNMDGYRLTQRL 867 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC-------------CCCEEEEcCCCCCCCHHHHHHHH
Confidence 56899999999999999999999999999999999999999763 79999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+.. +.+|||++|++...++..+|+++||++||.||++.++|..+|..+
T Consensus 868 r~~~----~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~ 916 (924)
T PRK10841 868 RQLG----LTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVY 916 (924)
T ss_pred HhcC----CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 9853 468999999999999999999999999999999999999988754
No 2
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=2.6e-54 Score=562.45 Aligned_cols=495 Identities=28% Similarity=0.426 Sum_probs=367.6
Q ss_pred HHHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceee
Q 042553 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEE 442 (1131)
Q Consensus 363 ae~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~ 442 (1131)
+++++..|++|+++|||||||||++|.|+++++.... ..++.+++++.|..++++|..+|+++|+++|+|++++.++..
T Consensus 286 ~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~ 364 (919)
T PRK11107 286 AQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP-LTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLENI 364 (919)
T ss_pred HHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 3445566889999999999999999999999875443 346778899999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCC
Q 042553 443 DFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAI 522 (1131)
Q Consensus 443 ~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~ 522 (1131)
+|++.+++++++..+...+.+|++.+.++.++..+ ..+.+|+.+|+|||.||++||+|||+.|.|.|++.....
T Consensus 365 ~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~--- 438 (919)
T PRK11107 365 PFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVP---DNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRAL--- 438 (919)
T ss_pred ecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCC---ceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEec---
Confidence 99999999999999999999999999987755432 358899999999999999999999999988777654211
Q ss_pred CCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC----CC
Q 042553 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EG 598 (1131)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~----~~ 598 (1131)
..+...+.|+|.|+|+|||++.++++|+||||.+.. .+
T Consensus 439 --------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~ 480 (919)
T PRK11107 439 --------------------------------------SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHG 480 (919)
T ss_pred --------------------------------------CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCC
Confidence 011235889999999999999999999999998653 47
Q ss_pred CcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccccccccCCCCCcccccccCCCCCCCccccccccccccCC
Q 042553 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAP 678 (1131)
Q Consensus 599 GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1131)
|+||||+|||++++.|||+|++.|.+ |.||+|+|.+|+......... +
T Consensus 481 g~GLGL~i~~~i~~~~gG~i~v~s~~--~~Gt~f~i~lp~~~~~~~~~~------------------------------~ 528 (919)
T PRK11107 481 GTGLGLVITQKLVNEMGGDISFHSQP--NRGSTFWFHLPLDLNPNPIID------------------------------G 528 (919)
T ss_pred CcchhHHHHHHHHHHhCCEEEEEecC--CCCEEEEEEEEeccCCccccc------------------------------c
Confidence 99999999999999999999998875 469999999988532111000 0
Q ss_pred CCCccccCCCCccccCCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHHhhhcCCCccccCCC
Q 042553 679 SPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSS 758 (1131)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 758 (1131)
.......|.++++++++...+..+..+++.+|+.+....+...+ .. ..++
T Consensus 529 ----------------~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~l----~~--~~~d-------- 578 (919)
T PRK11107 529 ----------------LPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQL----PE--AHYD-------- 578 (919)
T ss_pred ----------------CCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHHh----cc--CCCC--------
Confidence 00112456889999999999999999999999999877654431 00 0000
Q ss_pred CCCCCCCcCCCCccCCcccccccccccchhhhccccccCCCceEEEEecCCCcchHHHHHHHHHHhhhcccceeEEEccC
Q 042553 759 LGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDK 838 (1131)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vid~~~~~~~~~~~~~~~~~~~~~~~~~vv~l~~ 838 (1131)
..+.+.+++...+ ........... ......++++..
T Consensus 579 --------------~il~~~~~~~~~~---------------------------~~~~~~~~~~~---~~~~~~~i~~~~ 614 (919)
T PRK11107 579 --------------ILLLGLPVTFREP---------------------------LTMLHERLAKA---KSMTDFLILALP 614 (919)
T ss_pred --------------EEEecccCCCCCC---------------------------HHHHHHHHHhh---hhcCCcEEEEeC
Confidence 0011111111111 11111111111 111111222211
Q ss_pred CCccccccCCCccccCCCCCccccccccchhHHHHHhhcCccCCcccccccccccccCCCCCcCCCcccCCcCccccccc
Q 042553 839 PTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHE 918 (1131)
Q Consensus 839 ~~~~~i~~~~l~~~~~~~~~~~l~kP~~~s~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (1131)
+..... .......+...++.||+....+...+...... . +
T Consensus 615 ~~~~~~----~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~------~----------------~-------------- 654 (919)
T PRK11107 615 CHEQVL----AEQLKQDGADACLSKPLSHTRLLPALLEPCHH------K----------------Q-------------- 654 (919)
T ss_pred Ccchhh----HHHHhhCCCceEECCCCCHHHHHHHHHHhhcc------c----------------c--------------
Confidence 111100 00111224467889999988887776531100 0 0
Q ss_pred ccccCCCCccccccccCCcchhhhhcCCCCCCCCCccCCCCcccccccCCCCCCCCcceeecccccccccccccCCCCCC
Q 042553 919 IQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRG 998 (1131)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 998 (1131)
+ +.. .........
T Consensus 655 -----------------~---------------~~~-----------------------------------~~~~~~~~~ 667 (919)
T PRK11107 655 -----------------P---------------PLL-----------------------------------PPTDESRLP 667 (919)
T ss_pred -----------------c---------------ccc-----------------------------------cccccccCC
Confidence 0 000 000011234
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++.++..+..+|+..|+.|..+.+|++|++.+... +||+||||+.||+|||+++++.||
T Consensus 668 ~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~-------------~~dlil~D~~mp~~~g~~~~~~lr 734 (919)
T PRK11107 668 LTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQR-------------PFDLILMDIQMPGMDGIRACELIR 734 (919)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC-------------CCCEEEEeCCCCCCcHHHHHHHHH
Confidence 6899999999999999999999999999999999999998763 799999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+... .+++|||++|++...+...+|+++||++||.||++.++|...|+++
T Consensus 735 ~~~~--~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~ 784 (919)
T PRK11107 735 QLPH--NQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRY 784 (919)
T ss_pred hccc--CCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHH
Confidence 8642 3478999999999999999999999999999999999999998764
No 3
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=1.4e-52 Score=546.45 Aligned_cols=227 Identities=32% Similarity=0.485 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcce
Q 042553 361 QQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLI 440 (1131)
Q Consensus 361 ~~ae~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~ 440 (1131)
+++++++..|+.|++++||||||||++|.|+++++.... .+++.+++++.+..++.+|..+++++|+++|+|++++.+.
T Consensus 389 ~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~-~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 467 (921)
T PRK15347 389 QRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTP-LTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQMTLS 467 (921)
T ss_pred HHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccce
Confidence 344556677889999999999999999999999876443 4467788999999999999999999999999999999999
Q ss_pred eeeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCC
Q 042553 441 EEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520 (1131)
Q Consensus 441 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~ 520 (1131)
.+++++.+++++++..+...+..+++.+.+..++..+ ..+.+|+.+|+|||.|||+||+|||++|+|.|++...
T Consensus 468 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~--- 541 (921)
T PRK15347 468 LEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVP---LYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRH--- 541 (921)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCC---ceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEc---
Confidence 9999999999999999999999999999876654432 4588999999999999999999999999988876432
Q ss_pred CCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCc
Q 042553 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGT 600 (1131)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~Gt 600 (1131)
...+.|+|+|||+||+++++++||+||+|.+...+|+
T Consensus 542 -------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~g~ 578 (921)
T PRK15347 542 -------------------------------------------EQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTHSQGT 578 (921)
T ss_pred -------------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhcCcccCCCCCCCC
Confidence 1258899999999999999999999999998877899
Q ss_pred ccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 601 GLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 601 GLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
||||+|||+++++|||+|+++|.+ |.||+|+|.+|+.
T Consensus 579 GLGL~i~~~~~~~~gG~i~i~s~~--~~Gt~f~i~lp~~ 615 (921)
T PRK15347 579 GLGLTIASSLAKMMGGELTLFSTP--GVGSCFSLVLPLN 615 (921)
T ss_pred chHHHHHHHHHHHcCCEEEEEecC--CCceEEEEEEECC
Confidence 999999999999999999998865 4699999999875
No 4
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=2.3e-49 Score=518.72 Aligned_cols=227 Identities=37% Similarity=0.600 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccee
Q 042553 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE 441 (1131)
Q Consensus 362 ~ae~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~ 441 (1131)
++++++..|..|+++|||||||||++|.|+++++... ...++.+++++.|..++++|..+++++|+++|+|++++.++.
T Consensus 456 ~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~-~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~~~~ 534 (968)
T TIGR02956 456 EAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDT-GLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLSISP 534 (968)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeee
Confidence 3455666789999999999999999999999987544 345677889999999999999999999999999999999999
Q ss_pred eeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCC
Q 042553 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521 (1131)
Q Consensus 442 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~ 521 (1131)
++|++.++++++++.+.+.+..|++.+.++.++..+ ..+.+|+.+|+|||.|||+||+|||+.|.|.|.+....
T Consensus 535 ~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~--- 608 (968)
T TIGR02956 535 RPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLP---NWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLND--- 608 (968)
T ss_pred cccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCC---ceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcC---
Confidence 999999999999999999999999999988764332 35789999999999999999999999999888765321
Q ss_pred CCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC--CCC
Q 042553 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG--EGG 599 (1131)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~--~~G 599 (1131)
...+.|+|.|+|+|||++++++||+||+|.+.. .+|
T Consensus 609 ------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~g 646 (968)
T TIGR02956 609 ------------------------------------------DSSLLFEVEDTGCGIAEEEQATLFDAFTQADGRRRSGG 646 (968)
T ss_pred ------------------------------------------CCeEEEEEEeCCCCCCHHHHHHHHhhhhccCCCCCCCC
Confidence 012789999999999999999999999998753 379
Q ss_pred cccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 600 tGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
+||||+|||++++.|||+|+++|.+ |.||+|+|.+|+.
T Consensus 647 ~GLGL~i~~~l~~~~gG~i~~~s~~--~~Gt~f~~~lp~~ 684 (968)
T TIGR02956 647 TGLGLAISQRLVEAMDGELGVESEL--GVGSCFWFTLPLT 684 (968)
T ss_pred ccHHHHHHHHHHHHcCCEEEEEecC--CCcEEEEEEEEcC
Confidence 9999999999999999999998865 4699999999763
No 5
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=4.9e-48 Score=503.17 Aligned_cols=223 Identities=35% Similarity=0.559 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--Cccee
Q 042553 364 ERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGK--MQLIE 441 (1131)
Q Consensus 364 e~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~--~~l~~ 441 (1131)
++..+.|..|+++|||||||||++|.|+++++.... ..++.+++++.+..++++|..+++++|++++++.|. +.++.
T Consensus 438 ~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~~~~~~~~~ 516 (914)
T PRK11466 438 EKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP-ALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSD 516 (914)
T ss_pred HHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcceecc
Confidence 445567889999999999999999999999876443 345778899999999999999999999999999884 56677
Q ss_pred eeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCC
Q 042553 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521 (1131)
Q Consensus 442 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~ 521 (1131)
++|++.+++++++..+.+.+..|++.+.++.++..+ ..+.+|+.+|+|||.|||+||+|||+.|.|.|.+...
T Consensus 517 ~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~~~---- 589 (914)
T PRK11466 517 EPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLP---TALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSRTD---- 589 (914)
T ss_pred cccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCC---ceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc----
Confidence 899999999999999999999999999887654432 3588999999999999999999999999988876431
Q ss_pred CCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcc
Q 042553 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTG 601 (1131)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtG 601 (1131)
...+.|.|.|+|+|||++.++++|+||++.+...+|+|
T Consensus 590 ------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~g~G 627 (914)
T PRK11466 590 ------------------------------------------GEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRGGTG 627 (914)
T ss_pred ------------------------------------------CCEEEEEEEECCCCCCHHHHHHHhchhhcCCCCCCCCc
Confidence 12578999999999999999999999999887778999
Q ss_pred cchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 602 LGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 602 LGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
|||+|||++++.|||+|++.|.+ +.||+|+|.+|+
T Consensus 628 LGL~i~~~l~~~~gG~i~v~s~~--~~Gt~f~i~lP~ 662 (914)
T PRK11466 628 LGLTISSRLAQAMGGELSATSTP--EVGSCFCLRLPL 662 (914)
T ss_pred ccHHHHHHHHHHcCCEEEEEecC--CCCeEEEEEEEc
Confidence 99999999999999999998875 369999999876
No 6
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=9.6e-49 Score=500.93 Aligned_cols=224 Identities=36% Similarity=0.566 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeee
Q 042553 365 RKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDF 444 (1131)
Q Consensus 365 ~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~ 444 (1131)
++.+.|+.|+++|||||||||++|.|+++++... ..+++.+++++.+..++++|..+++++++++|++++++.+..+++
T Consensus 278 ~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~ 356 (779)
T PRK11091 278 KASRDKTTFISTISHELRTPLNGIVGLSRILLDT-ELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQPI 356 (779)
T ss_pred HHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeecc
Confidence 3344678999999999999999999999987543 345677889999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCC
Q 042553 445 DVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN 524 (1131)
Q Consensus 445 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~ 524 (1131)
++.++++++...+...+..+++.+.++...+. +..+.+|+.+|+|||.||++||+|||++|.|.|.+....
T Consensus 357 ~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~------ 427 (779)
T PRK11091 357 DFTDFLADLENLSGLQAEQKGLRFDLEPLLPL---PHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEE------ 427 (779)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCC---CceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcc------
Confidence 99999999999999999999999998765442 135889999999999999999999999998888765321
Q ss_pred CCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecC-C----CCCC
Q 042553 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK-E----GEGG 599 (1131)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~-~----~~~G 599 (1131)
...+.|+|.|+|+|||++.+++||+|||+++ . ..+|
T Consensus 428 ---------------------------------------~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~G 468 (779)
T PRK11091 428 ---------------------------------------GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATG 468 (779)
T ss_pred ---------------------------------------CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCC
Confidence 1247899999999999999999999999985 2 2479
Q ss_pred cccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 600 tGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
+||||+|||+||+.|||+|+++|.+ |.||+|+|.+|++
T Consensus 469 tGLGL~i~~~iv~~~gG~i~v~s~~--g~Gt~f~i~lP~~ 506 (779)
T PRK11091 469 TGIGLAVSKRLAQAMGGDITVTSEE--GKGSCFTLTIHAP 506 (779)
T ss_pred cchHHHHHHHHHHHcCCEEEEEecC--CCeEEEEEEEecc
Confidence 9999999999999999999998875 4699999999764
No 7
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=2.7e-44 Score=480.26 Aligned_cols=231 Identities=30% Similarity=0.473 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccee
Q 042553 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE 441 (1131)
Q Consensus 362 ~ae~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~ 441 (1131)
+++++...|.+|+++|||||||||++|.|+++++.......++..+.+..+..++++|..+|+++++++|++++...+..
T Consensus 704 ~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~~~~~~~ 783 (1197)
T PRK09959 704 KAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQP 783 (1197)
T ss_pred HHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeee
Confidence 33445567889999999999999999999999876544344455677888999999999999999999999999999999
Q ss_pred eeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCC
Q 042553 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521 (1131)
Q Consensus 442 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~ 521 (1131)
+++++.+++++++..+...+..+++.+.+....+. ...+.+|+.+|+|||.||++||+||++.|.+.+.+.....
T Consensus 784 ~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~-- 858 (1197)
T PRK09959 784 QWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPD---HYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHI-- 858 (1197)
T ss_pred eeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCC---ceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeee--
Confidence 99999999999999999999999999987643221 1358899999999999999999999999877666532110
Q ss_pred CCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC--CCCC
Q 042553 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE--GEGG 599 (1131)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~--~~~G 599 (1131)
..+...+.|+|.|+|+|||++.+++||+||++.+. ..+|
T Consensus 859 ---------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~G 899 (1197)
T PRK09959 859 ---------------------------------------DDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTG 899 (1197)
T ss_pred ---------------------------------------cCCceEEEEEEEEcCCCCCHHHHHHhhccccccccCCCCCC
Confidence 11223578999999999999999999999999765 3469
Q ss_pred cccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 600 TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 600 tGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
+||||+|||+||+.|||+|++.|.+ |.||+|+|.+|+
T Consensus 900 ~GLGL~i~~~iv~~~gG~i~v~s~~--~~Gt~f~i~lP~ 936 (1197)
T PRK09959 900 SGLGLMICKELIKNMQGDLSLESHP--GIGTTFTITIPV 936 (1197)
T ss_pred cCchHHHHHHHHHHcCCEEEEEeCC--CCcEEEEEEEEc
Confidence 9999999999999999999999875 469999999876
No 8
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=2.4e-40 Score=424.53 Aligned_cols=227 Identities=23% Similarity=0.334 Sum_probs=182.9
Q ss_pred HHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHH
Q 042553 368 MNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447 (1131)
Q Consensus 368 ~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~ 447 (1131)
.....|++++||||||||++|.|+++++........+..++++.|..+++++..+++++++++|.+.+ ..+++++.
T Consensus 448 ~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~ 523 (828)
T PRK13837 448 EAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLS 523 (828)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHH
Confidence 34568999999999999999999999876655555677889999999999999999999999996544 35789999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCCCCCCC
Q 042553 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPS 526 (1131)
Q Consensus 448 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~ 526 (1131)
+++++++..+.. ...+++.+.++.+... ..+.+|+.+|.|||.||++||+||++. |.|.|++..........
T Consensus 524 ~ll~~~~~~~~~-~~~~~i~l~~~~~~~~----~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~-- 596 (828)
T PRK13837 524 ELVTEIAPLLRV-SLPPGVELDFDQDQEP----AVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKV-- 596 (828)
T ss_pred HHHHHHHHHHHH-HccCCcEEEEEeCCCC----ceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccc--
Confidence 999999998875 4457888887765432 458999999999999999999999875 67777765431110000
Q ss_pred CCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHH
Q 042553 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGI 606 (1131)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsI 606 (1131)
...........+.|+|.|+|+|||++.+++||+|||+.+. +|+||||+|
T Consensus 597 -----------------------------~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~--~G~GLGL~i 645 (828)
T PRK13837 597 -----------------------------LSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA--GGTGLGLAT 645 (828)
T ss_pred -----------------------------cccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC--CCCcchHHH
Confidence 0000001234689999999999999999999999998765 799999999
Q ss_pred HHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 607 VQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 607 vk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
||++++.|||+|++.|.+ |.||+|+|++|+
T Consensus 646 ~~~iv~~~gG~i~v~s~~--g~Gt~f~i~LP~ 675 (828)
T PRK13837 646 VHGIVSAHAGYIDVQSTV--GRGTRFDVYLPP 675 (828)
T ss_pred HHHHHHHCCCEEEEEecC--CCeEEEEEEEeC
Confidence 999999999999998865 469999999875
No 9
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=6.5e-40 Score=415.56 Aligned_cols=277 Identities=21% Similarity=0.329 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccee
Q 042553 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE 441 (1131)
Q Consensus 362 ~ae~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~ 441 (1131)
+++++...|.+|+++|||||||||++|.|+++++... ..+++.+++++.|..++++|.++|+++++++|+|+|++.++.
T Consensus 442 ~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~-~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~~~~~l~~ 520 (894)
T PRK10618 442 EYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQT-SDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLETQDWKPEQ 520 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 3455567789999999999999999999999987543 344677889999999999999999999999999999999999
Q ss_pred eeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCC
Q 042553 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521 (1131)
Q Consensus 442 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~ 521 (1131)
++|++.+++++++..+.+.+.+|++.+.++.+... ...+.+|+.+|+|||.|||+||+|||+.|.|.|.+....
T Consensus 521 ~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~---~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~~--- 594 (894)
T PRK10618 521 ELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKA---EQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQDE--- 594 (894)
T ss_pred eeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCC---CcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEcc---
Confidence 99999999999999999999999999987654332 145889999999999999999999999999888775321
Q ss_pred CCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC---CC
Q 042553 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG---EG 598 (1131)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~---~~ 598 (1131)
.....+.|+|.|||+|||++.+++||+||++.+.. .+
T Consensus 595 ----------------------------------------~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~ 634 (894)
T PRK10618 595 ----------------------------------------SSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGK 634 (894)
T ss_pred ----------------------------------------CCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCC
Confidence 11136899999999999999999999999987542 36
Q ss_pred CcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccccccccCCCCCcccccccCCCCCCCccccccccccccCC
Q 042553 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAP 678 (1131)
Q Consensus 599 GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1131)
|+||||+|||+||++|||+|+++|.+ |.||+|+|++|+........ + .
T Consensus 635 GtGLGLaI~k~Lve~~GG~I~v~S~~--g~GT~F~I~LPl~~~~~~~~--------~----------------------~ 682 (894)
T PRK10618 635 ASGLTFFLCNQLCRKLGGHLTIKSRE--GLGTRYSIHLKMLAADPEVE--------E----------------------E 682 (894)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEECC--CCcEEEEEEEEccCCccccc--------c----------------------c
Confidence 99999999999999999999999876 47999999999852110000 0 0
Q ss_pred CCCccccCCCCccccCCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHcCCeeeeccc
Q 042553 679 SPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSR 734 (1131)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~ 734 (1131)
. .....|.++++++|++..+.++..+|+.||+.|..+.+
T Consensus 683 ~-----------------~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~ 721 (894)
T PRK10618 683 E-----------------EKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDE 721 (894)
T ss_pred c-----------------cccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 0 01134678999999999999999999999999987653
No 10
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-40 Score=415.11 Aligned_cols=287 Identities=32% Similarity=0.399 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHH
Q 042553 344 RKEMHLCASLIKQMEATQQAERKSMNKSL--AFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLG 421 (1131)
Q Consensus 344 ~~e~~~~~~l~~~~ea~~~ae~~~~~ks~--flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~ 421 (1131)
.+...+...+.+..++...++.+...+++ |+++++|||||||++ |+...+ .....+.+++.+++....++..++.
T Consensus 193 ~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~s 269 (786)
T KOG0519|consen 193 DRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GMLGGL-SDTDLDSDQRLILNTDRVSAKSLLS 269 (786)
T ss_pred chhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--CcceEE-eccccchHHHHHHHHHhhhccccch
Confidence 44444445555556666666777667777 999999999999997 444332 2334456788899999999999999
Q ss_pred HHHHHHHHHhhhcCCCcceeeeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHH
Q 042553 422 LLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNA 501 (1131)
Q Consensus 422 LIndlLdlskie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NA 501 (1131)
++|+++|.+++++|.+++...+|++..+++.++..+.+.+.+++..+.+..+++. +..+.+|+.+++||+.|+++||
T Consensus 270 ~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~---p~~v~~de~~~~qv~~n~v~na 346 (786)
T KOG0519|consen 270 LLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGV---PRNVRGDEARLRQVIANLVSNA 346 (786)
T ss_pred hHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCC---cceeeccceeeeeeehhhccce
Confidence 9999999999999999999999999999999999999999999999998877662 3568999999999999999999
Q ss_pred hhccCCCeEEEEEeecCCCCCCCCCCCCC---ccCcc-cchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCC
Q 042553 502 VKFTSEGHISVRACVKKPSAIGNPSLSSS---RHGFL-QSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKG 577 (1131)
Q Consensus 502 iKfT~~G~I~v~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G 577 (1131)
+|||..|+|.++++........+...... .+... ........+....+.... ........-....+.+.|+|.|
T Consensus 347 ik~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~l~~~~~~~~~~~~~ 424 (786)
T KOG0519|consen 347 IKFTHAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRH--NIISLLSLLLQDIVLSPDSGLE 424 (786)
T ss_pred ecccccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccc--cccccchhhHhheEeccCCcee
Confidence 99999999999887755332211000000 00000 000000000000000000 0000000012346889999999
Q ss_pred CCcchHhh-hccCCeecCC----CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 578 IPKEKRKT-VFENYVQVKE----GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 578 I~~e~~~~-IFe~F~q~~~----~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
|+.+.... +|..|-|++. ..+|+|+|++||+.++++|+|.|.+.+.. ..|++|+|.+++..
T Consensus 425 i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~--~~~~t~~~~~~~~~ 490 (786)
T KOG0519|consen 425 IQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCI--SLGKTFSFTLDLLT 490 (786)
T ss_pred EehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhh--ccCceeeEEEEecc
Confidence 99999888 9999999865 35899999999999999999999998765 36999999987754
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-39 Score=348.52 Aligned_cols=219 Identities=28% Similarity=0.456 Sum_probs=186.9
Q ss_pred HHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHH
Q 042553 369 NKSLAFANASHDIRAALAGITGLIELCYVEAGPGSE-LETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447 (1131)
Q Consensus 369 ~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~-~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~ 447 (1131)
.+..|.||+|||||||||++.+++|.|....-.+.+ ....+..-....+||.+|+||||.+||++....+++.+.+|+.
T Consensus 224 ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inft 303 (459)
T COG5002 224 ERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFT 303 (459)
T ss_pred HHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHHhH
Confidence 356899999999999999999999987655433332 4567888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcE-EEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC-eEEEEEeecCCCCCCCC
Q 042553 448 ELLEDVVDLFHPVAMRKGVE-VVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG-HISVRACVKKPSAIGNP 525 (1131)
Q Consensus 448 ~ll~~v~~~~~~~a~~k~i~-l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~ 525 (1131)
.++..+++.+.....+..+. +.-+.+... .+|..|+.++-||+.|+|+||+||+|+| +|++.+...
T Consensus 304 ~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~----~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-------- 371 (459)
T COG5002 304 AFLNEIINRFEMILKKETIARFVRDIPKQD----IWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-------- 371 (459)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhcCCCCc----eEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee--------
Confidence 99999999998875555443 333334333 4688999999999999999999999985 688876421
Q ss_pred CCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC----CCCcc
Q 042553 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTG 601 (1131)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~----~~GtG 601 (1131)
...+.++|.|.|.|||++++++||++|||++.. .||||
T Consensus 372 --------------------------------------~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTG 413 (459)
T COG5002 372 --------------------------------------ETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTG 413 (459)
T ss_pred --------------------------------------CcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCc
Confidence 226899999999999999999999999999763 48999
Q ss_pred cchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 602 LGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 602 LGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
|||+|+|.||+.|||.||++|.+ |+||+|+|+||..
T Consensus 414 LGLaIakeiV~~hgG~iWA~s~~--gkgtt~~ftLPy~ 449 (459)
T COG5002 414 LGLAIAKEIVQAHGGRIWAESEE--GKGTTFSFTLPYS 449 (459)
T ss_pred hhHHHHHHHHHHhCCeEEEeccc--CCceEEEEEeccc
Confidence 99999999999999999998874 5899999999875
No 12
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-36 Score=359.07 Aligned_cols=220 Identities=25% Similarity=0.402 Sum_probs=188.9
Q ss_pred HHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeee
Q 042553 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAG--PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDF 444 (1131)
Q Consensus 367 ~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~--~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~ 444 (1131)
.+.++.+++.+||||||||++|.|.++.|..... +.++..+.+..|...+++|.++|++|||++|+++|.++++.++.
T Consensus 657 E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~~~ 736 (890)
T COG2205 657 ERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLDWV 736 (890)
T ss_pred HHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccchh
Confidence 3457789999999999999999999998765432 23446778999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCe-EEEEEeecCCCCCC
Q 042553 445 DVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGH-ISVRACVKKPSAIG 523 (1131)
Q Consensus 445 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~-I~v~~~~~~~~~~~ 523 (1131)
.+.+++.+++.........+. +.++.+++. +.+.+|...|.|||.|||+||+||+|.|. |.|.++...
T Consensus 737 ~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl----~li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~----- 805 (890)
T COG2205 737 LVEEVVGEALQRLRKRFTGHK--IVVSVPVDL----PLIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVER----- 805 (890)
T ss_pred hHHHHHHHHHHHhhhhcCCce--EEEecCCCC----ceEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEec-----
Confidence 999999999998877665555 445544443 45889999999999999999999999874 888775431
Q ss_pred CCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC--CCCCcc
Q 042553 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE--GEGGTG 601 (1131)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~--~~~GtG 601 (1131)
..+.|+|.|+|+|||++++++||++||+.++ ...|+|
T Consensus 806 -----------------------------------------~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~~~G~G 844 (890)
T COG2205 806 -----------------------------------------ENVVFSVIDEGPGIPEGELERIFDKFYRGNKESATRGVG 844 (890)
T ss_pred -----------------------------------------ceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCCCCCcc
Confidence 2589999999999999999999999999865 357999
Q ss_pred cchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 602 LGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 602 LGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
|||+|||.||+.|||+|++++.. +.|++|+|++|...
T Consensus 845 LGLsIc~~iv~ahgG~I~a~~~~--~gGa~f~~~LP~~~ 881 (890)
T COG2205 845 LGLAICRGIVEAHGGTISAENNP--GGGAIFVFTLPVEE 881 (890)
T ss_pred ccHHHHHHHHHHcCCeEEEEEcC--CCceEEEEEeecCC
Confidence 99999999999999999999854 45999999998763
No 13
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=6.5e-34 Score=348.32 Aligned_cols=226 Identities=19% Similarity=0.278 Sum_probs=173.0
Q ss_pred HHHHHHchHhhHHHHHHHHHHHHHHHhhCC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecH
Q 042553 371 SLAFANASHDIRAALAGITGLIELCYVEAG----PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV 446 (1131)
Q Consensus 371 s~flA~iSHELRTPLt~I~g~~ell~~~~~----~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL 446 (1131)
..+++.++||+||||+.|.++++++..... ......+.++.+...++++..++++++++++.. .+....+++
T Consensus 164 ~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~~l 239 (540)
T PRK13557 164 GQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVLNL 239 (540)
T ss_pred hhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCcccCH
Confidence 357789999999999999999998653321 234566778889999999999999999999853 344577999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC-eEEEEEeecCCCCCCCC
Q 042553 447 GELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG-HISVRACVKKPSAIGNP 525 (1131)
Q Consensus 447 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~ 525 (1131)
..+++.+...+.. ...+++.+.+..++.. ..+.+|+.+|.|+|.||+.||+||++.| .|.+............
T Consensus 240 ~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~----~~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~- 313 (540)
T PRK13557 240 NGLVSGMGELAER-TLGDAVTIETDLAPDL----WNCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDL- 313 (540)
T ss_pred HHHHHHHHHHHHH-hcCCCeEEEEecCCCC----CceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcccc-
Confidence 9999988876653 4457777777655432 3478899999999999999999999865 5555443211000000
Q ss_pred CCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchH
Q 042553 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLG 605 (1131)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLs 605 (1131)
...........+.|+|.|+|+||+++.++++|++||+.+...+|+||||+
T Consensus 314 ------------------------------~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~~~g~GlGL~ 363 (540)
T PRK13557 314 ------------------------------AMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEEGKGTGLGLS 363 (540)
T ss_pred ------------------------------ccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCCCCCCCccHH
Confidence 00000012236789999999999999999999999998776789999999
Q ss_pred HHHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 606 Ivk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
|||++++.|||+|++++.+ |.||+|+|.+|.
T Consensus 364 i~~~~v~~~gG~i~~~s~~--~~G~~f~i~lP~ 394 (540)
T PRK13557 364 MVYGFAKQSGGAVRIYSEV--GEGTTVRLYFPA 394 (540)
T ss_pred HHHHHHHHCCCEEEEEecC--CCceEEEEEeeC
Confidence 9999999999999998865 469999998865
No 14
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=5.7e-34 Score=334.34 Aligned_cols=226 Identities=24% Similarity=0.414 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCC-C-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042553 363 AERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP-G-----SELETNLRQMNVCANDLLGLLNSILDTSKVEAGK 436 (1131)
Q Consensus 363 ae~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~-~-----~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~ 436 (1131)
.++....+.+|++++||||||||++|.++++++...... . +..++.++.+..++++|..++++++++++.+.+.
T Consensus 144 l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~~~~~~~~ 223 (380)
T PRK09303 144 LLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEVGRTRWEA 223 (380)
T ss_pred HHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 344455688999999999999999999999987643221 1 2356778889999999999999999999999999
Q ss_pred CcceeeeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC-eEEEEEe
Q 042553 437 MQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG-HISVRAC 515 (1131)
Q Consensus 437 ~~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~ 515 (1131)
..++.+++|+.+++++++..+.+.+..+++.+.++.+.+. +.+.+|+.+|+|||.|||+||+||++.| .|.+.+.
T Consensus 224 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~----~~v~~d~~~l~qvl~NLl~NAik~~~~~~~I~i~~~ 299 (380)
T PRK09303 224 LRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDL----PSVYADQERIRQVLLNLLDNAIKYTPEGGTITLSML 299 (380)
T ss_pred ceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCC----CeEEeCHHHHHHHHHHHHHHHHhcCCCCceEEEEEE
Confidence 9999999999999999999999999999999999876543 3589999999999999999999999874 6666543
Q ss_pred ecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC
Q 042553 516 VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595 (1131)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~ 595 (1131)
.. ....+.|+|.|+|+|||++.+++||+|||+.+.
T Consensus 300 ~~---------------------------------------------~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~ 334 (380)
T PRK09303 300 HR---------------------------------------------TTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR 334 (380)
T ss_pred ec---------------------------------------------CCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC
Confidence 21 112578999999999999999999999999865
Q ss_pred --CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 596 --GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 596 --~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
..+|+||||+|||++|+.|||+|++.|.++ .|++|+|++|+.
T Consensus 335 ~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~--~Gt~f~i~lP~~ 378 (380)
T PRK09303 335 DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPG--QGSCFHFTLPVY 378 (380)
T ss_pred CCCCCcccccHHHHHHHHHHcCCEEEEEecCC--CccEEEEEEecC
Confidence 346999999999999999999999988753 599999999863
No 15
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-31 Score=302.68 Aligned_cols=209 Identities=25% Similarity=0.410 Sum_probs=179.6
Q ss_pred HHHchHhhHHHHHHHHHHHHH--HHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHH
Q 042553 374 FANASHDIRAALAGITGLIEL--CYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLE 451 (1131)
Q Consensus 374 lA~iSHELRTPLt~I~g~~el--l~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~ 451 (1131)
-|.+||||+.||++|+++++- +..+....++..+.+..|..-+++|-.+..+|-.|++--... .+++.+.+.|+
T Consensus 388 SA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~~ai~ 463 (603)
T COG4191 388 SAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLREAIE 463 (603)
T ss_pred HHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHHHHHH
Confidence 378999999999999999983 223344456788899999999999999999999999854443 57899999999
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccC---CCeEEEEEeecCCCCCCCCCCC
Q 042553 452 DVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS---EGHISVRACVKKPSAIGNPSLS 528 (1131)
Q Consensus 452 ~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~---~G~I~v~~~~~~~~~~~~~~~~ 528 (1131)
+++..+++..+..++.+..+.++.+ .+|++|+.||+|||.|||.||+..+. ++.|.|++...
T Consensus 464 ~Al~ll~~R~~~~~~~l~~~~~~~~----~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~----------- 528 (603)
T COG4191 464 GALELLRGRLRAAGVELELDLPDAP----LWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQRE----------- 528 (603)
T ss_pred HHHHHHHHhhhccCceeeccCCCCC----ceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEec-----------
Confidence 9999999999999999998877644 46999999999999999999999985 45677766421
Q ss_pred CCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHH
Q 042553 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQ 608 (1131)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk 608 (1131)
+..+.|+|.|+|+||++|.+.++||||++++....|.||||+||+
T Consensus 529 -----------------------------------~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~~GLGLGLaIS~ 573 (603)
T COG4191 529 -----------------------------------GGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPVGKGLGLGLAISQ 573 (603)
T ss_pred -----------------------------------CCeEEEEEccCCCCCCHHHHHhhcCCccccCcccCCcchhHHHHH
Confidence 225889999999999999999999999999987789999999999
Q ss_pred HHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 609 SLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 609 ~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
+|++-|||+|.+.+.+. .|+.|++.|+.
T Consensus 574 ~i~~d~GGsL~v~n~~~--~Ga~F~i~L~~ 601 (603)
T COG4191 574 NIARDLGGSLEVANHPE--GGASFTIELRR 601 (603)
T ss_pred HHHHHhCCeEEeecCCC--CceEEEEEeec
Confidence 99999999999987553 59999999864
No 16
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=1.5e-30 Score=314.43 Aligned_cols=214 Identities=21% Similarity=0.297 Sum_probs=181.2
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~l 449 (1131)
...|++++||||||||++|.++++.+....... ..+....+.+...++..+++++++.++++++...+..+.+++.++
T Consensus 266 ~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~--~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~~~~l~~l 343 (485)
T PRK10815 266 YRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMS--VEQAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRELHSVAPL 343 (485)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccceecHHHH
Confidence 456899999999999999999999875443222 223345567778899999999999999999988888899999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCCC
Q 042553 450 LEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529 (1131)
Q Consensus 450 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~ 529 (1131)
++++++.+...+..+++++.++.+++ ..+.+|+..|.||+.||++||+||++++ |.|.+...
T Consensus 344 l~~~~~~l~~~~~~~~i~i~~~~~~~-----~~v~~d~~~l~~vl~NLi~NAik~~~~~-i~I~~~~~------------ 405 (485)
T PRK10815 344 LDNLTSALNKVYQRKGVNITLDISPE-----ITFVGEKNDFMEVMGNVLDNACKYCLEF-VEISARQT------------ 405 (485)
T ss_pred HHHHHHHHHHHHHHCCcEEEEecCCC-----cEEEeCHHHHHHHHHHHHHHHHHhcCCc-EEEEEEEe------------
Confidence 99999999999999999999887543 2467999999999999999999999763 55544321
Q ss_pred CccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHH
Q 042553 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQS 609 (1131)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~ 609 (1131)
...+.|.|.|+|+||+++.++++|+||++.+...+|+||||+|||+
T Consensus 406 ----------------------------------~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~~~G~GLGL~Ivk~ 451 (485)
T PRK10815 406 ----------------------------------DEHLHIVVEDDGPGIPESKRELIFDRGQRADTLRPGQGLGLSVARE 451 (485)
T ss_pred ----------------------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCcchhHHHHHH
Confidence 1257899999999999999999999999988777899999999999
Q ss_pred HHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 610 LVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 610 Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
+++.|||+|.++|.++ .||+|++.+|.+
T Consensus 452 iv~~~gG~i~v~s~~~--~Gt~f~i~lp~~ 479 (485)
T PRK10815 452 ITEQYEGKISAGDSPL--GGARMEVIFGRQ 479 (485)
T ss_pred HHHHcCCEEEEEECCC--CEEEEEEEEcCC
Confidence 9999999999988753 599999998754
No 17
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=99.98 E-value=3.6e-31 Score=316.04 Aligned_cols=216 Identities=30% Similarity=0.426 Sum_probs=182.3
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~l 449 (1131)
+.+|++++||||||||++|.|+++++.......+...++++.|..++++|..+++++++++|++.+......+.+++..+
T Consensus 204 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~~ 283 (430)
T PRK11006 204 RRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPMM 283 (430)
T ss_pred HHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHHH
Confidence 44799999999999999999999987654444456677899999999999999999999999999887777788999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC-eEEEEEeecCCCCCCCCCCC
Q 042553 450 LEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG-HISVRACVKKPSAIGNPSLS 528 (1131)
Q Consensus 450 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~~~ 528 (1131)
++.+...+...+ .+++.+.++.++. ..+.+|+.+|+||+.||++||+||+++| .|.|.+...
T Consensus 284 ~~~l~~~~~~~~-~~~~~i~~~~~~~-----~~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~----------- 346 (430)
T PRK11006 284 LRVLEREAQTLS-QGKHTITFEVDNS-----LKVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV----------- 346 (430)
T ss_pred HHHHHHHHHHHh-cCCcEEEEecCCC-----ceEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc-----------
Confidence 998888776655 6778888876543 2478999999999999999999999875 566654321
Q ss_pred CCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC----CCCcccch
Q 042553 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGLGL 604 (1131)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~----~~GtGLGL 604 (1131)
...+.|+|.|+|+|||++.++++|+|||+.+.. .+|+||||
T Consensus 347 -----------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL 391 (430)
T PRK11006 347 -----------------------------------PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGL 391 (430)
T ss_pred -----------------------------------CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHH
Confidence 124789999999999999999999999997652 36999999
Q ss_pred HHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 605 GIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 605 sIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
+|||++++.|||+|+++|.+ +.||+|+|.+|..
T Consensus 392 ~ivk~iv~~~gG~i~i~s~~--~~Gt~f~i~lP~~ 424 (430)
T PRK11006 392 AIVKHALSHHDSRLEIESEV--GKGTRFSFVLPER 424 (430)
T ss_pred HHHHHHHHHCCCEEEEEecC--CCceEEEEEechH
Confidence 99999999999999998875 3699999998753
No 18
>PRK10604 sensor protein RstB; Provisional
Probab=99.98 E-value=3.9e-30 Score=307.36 Aligned_cols=213 Identities=24% Similarity=0.370 Sum_probs=178.5
Q ss_pred HHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecH
Q 042553 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV 446 (1131)
Q Consensus 367 ~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL 446 (1131)
...+.+|++++||||||||+.|.+.++++.. . ..++ .+.+.+..++|..++++++.++|++.+...+..+++++
T Consensus 209 ~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~-~-~~~~----~~~i~~~~~~l~~li~~ll~~~rl~~~~~~~~~~~~~l 282 (433)
T PRK10604 209 IASKKQLIDGIAHELRTPLVRLRYRLEMSDN-L-SAAE----SQALNRDIGQLEALIEELLTYARLDRPQNELHLSEPDL 282 (433)
T ss_pred HHHHHHHHHHhhHhhcChHHHHHHHHHHhcC-C-CcHH----HHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCH
Confidence 3446688999999999999999999988642 1 1122 23377788999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCC
Q 042553 447 GELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPS 526 (1131)
Q Consensus 447 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~ 526 (1131)
.+++++++..+......+++++.++.++ ..+.+|+..++||+.||++||+||+. |.|.|++...
T Consensus 283 ~~~l~~~i~~~~~~~~~~~i~~~~~~~~------~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~--------- 346 (433)
T PRK10604 283 PAWLSTHLADIQAVTPEKTVRLDTPHQG------DYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLD--------- 346 (433)
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEecCCC------ceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEE---------
Confidence 9999999999998888888888775432 23668999999999999999999985 6777766432
Q ss_pred CCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC----CCCccc
Q 042553 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGL 602 (1131)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~----~~GtGL 602 (1131)
...+.|+|.|+|+|||++++++||+|||+.+.+ .+|+||
T Consensus 347 -------------------------------------~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GL 389 (433)
T PRK10604 347 -------------------------------------GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGL 389 (433)
T ss_pred -------------------------------------CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccc
Confidence 124789999999999999999999999997653 369999
Q ss_pred chHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 603 GLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 603 GLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
||+|||++++.|||+|.+++.+ +.|++|++.+|...
T Consensus 390 GL~ivk~i~~~~gG~i~v~s~~--~~G~~f~i~lP~~~ 425 (433)
T PRK10604 390 GLAIVHSIALAMGGSVNCDESE--LGGARFSFSWPVWH 425 (433)
T ss_pred hHHHHHHHHHHCCCEEEEEecC--CCeeEEEEEEeCCC
Confidence 9999999999999999999875 35999999998753
No 19
>PRK09835 sensor kinase CusS; Provisional
Probab=99.98 E-value=2.8e-29 Score=303.65 Aligned_cols=216 Identities=25% Similarity=0.401 Sum_probs=182.6
Q ss_pred HHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHH
Q 042553 368 MNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447 (1131)
Q Consensus 368 ~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~ 447 (1131)
..+..|.+++||||||||+.|.+.++.+........+..+.+..+.....++..+++++++++|.+.+......+++++.
T Consensus 260 ~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~l~ 339 (482)
T PRK09835 260 TRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLDLA 339 (482)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeecHH
Confidence 44567899999999999999999998765544333455666777777888999999999999999999888888999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC-eEEEEEeecCCCCCCCCC
Q 042553 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG-HISVRACVKKPSAIGNPS 526 (1131)
Q Consensus 448 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~ 526 (1131)
++++++++.+...+.++++.+.++... ..+.+|+.+|+||+.||++||+||+++| .|.|++...
T Consensus 340 ~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~~--------- 404 (482)
T PRK09835 340 DEVGKVFDFFEAWAEERGVELRFVGDP------CQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEV--------- 404 (482)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEeCCC------cEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe---------
Confidence 999999999999999999998876321 3478999999999999999999999865 477765321
Q ss_pred CCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC----CCCccc
Q 042553 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGL 602 (1131)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~----~~GtGL 602 (1131)
...+.|+|.|+|.|||++.++++|+|||+.+.. .+|+||
T Consensus 405 -------------------------------------~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~Gl 447 (482)
T PRK09835 405 -------------------------------------DHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGI 447 (482)
T ss_pred -------------------------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcch
Confidence 114789999999999999999999999998653 369999
Q ss_pred chHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 603 GLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 603 GLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
||+|||++++.|||+|+++|.+ .|++|++.+|.
T Consensus 448 GL~i~~~i~~~~~g~i~~~s~~---~g~~~~i~lP~ 480 (482)
T PRK09835 448 GLAIVKSIVVAHKGTVAVTSDA---RGTRFVISLPR 480 (482)
T ss_pred HHHHHHHHHHHCCCEEEEEECC---CcEEEEEEeeC
Confidence 9999999999999999998752 49999998874
No 20
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=1.7e-28 Score=307.81 Aligned_cols=216 Identities=21% Similarity=0.330 Sum_probs=182.8
Q ss_pred HHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHH
Q 042553 368 MNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447 (1131)
Q Consensus 368 ~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~ 447 (1131)
.....|.+++||||||||+.|.+.++.+.... ...+..++++.+...+++|..++++++++++++.+......+++|+.
T Consensus 483 ~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~-~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~~~~~~~~dl~ 561 (703)
T TIGR03785 483 HYLENMSSRLSHELRTPVAVVRSSLENLELQA-LEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQSAEVEDFDLS 561 (703)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeecHH
Confidence 34556789999999999999999999865433 33556678999999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC-eEEEEEeecCCCCCCCCC
Q 042553 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG-HISVRACVKKPSAIGNPS 526 (1131)
Q Consensus 448 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~ 526 (1131)
+++++++..+...+..+++.+.++.++ ..+.+|+..|.||+.|||+||+||+++| .|.|.+...
T Consensus 562 ~ll~~~i~~~~~~~~~~~i~l~i~~~~------~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~--------- 626 (703)
T TIGR03785 562 EVLSGCMQGYQMTYPPQRFELNIPETP------LVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQN--------- 626 (703)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEecCCC------eEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEc---------
Confidence 999999999999998888888775432 2578999999999999999999999864 566655321
Q ss_pred CCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC----CCCccc
Q 042553 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTGL 602 (1131)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~----~~GtGL 602 (1131)
...+.|+|.|+|+||+++.+++||+||++.+.. .+|+||
T Consensus 627 -------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GL 669 (703)
T TIGR03785 627 -------------------------------------KSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGL 669 (703)
T ss_pred -------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccH
Confidence 125789999999999999999999999986532 248999
Q ss_pred chHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEe
Q 042553 603 GLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637 (1131)
Q Consensus 603 GLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~ 637 (1131)
||+|||+|++.|||+|.+.+..+ +.|++|++.+|
T Consensus 670 GL~Ivr~Iv~~~gG~I~v~s~~~-g~Gt~f~I~LP 703 (703)
T TIGR03785 670 GLYIVRLIADFHQGRIQAENRQQ-NDGVVFRISLP 703 (703)
T ss_pred HHHHHHHHHHHcCCEEEEEECCC-CCeEEEEEEeC
Confidence 99999999999999999988754 36999999875
No 21
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=1.7e-29 Score=304.07 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=181.2
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~l 449 (1131)
...+.+++||||||||++|.|+++++........+.++.++.+...++++..+++++++++|.. .....++++.++
T Consensus 237 ~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~~ 312 (457)
T PRK10364 237 LGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLNDL 312 (457)
T ss_pred HHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHHH
Confidence 4467899999999999999999998766555555667788889999999999999999999843 345678999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCCCCCCCCC
Q 042553 450 LEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPSLS 528 (1131)
Q Consensus 450 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~ 528 (1131)
+++++..+...+.++++.+.++.+... ..+.+|+.+|.|++.||++||+||+++ |.|.|.+...
T Consensus 313 l~~~~~~~~~~~~~~~i~l~~~~~~~~----~~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~----------- 377 (457)
T PRK10364 313 INHSLQLVSQDANSREIQLRFTANDTL----PEIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASES----------- 377 (457)
T ss_pred HHHHHHHHHHHHHhcCeEEEEEcCCCC----ceEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEe-----------
Confidence 999999999999999999999876532 347889999999999999999999875 5677765321
Q ss_pred CCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHH
Q 042553 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQ 608 (1131)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk 608 (1131)
...+.|+|+|+|+|||++.++++|++|++.+. +|+||||+|||
T Consensus 378 -----------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~--~g~GlGL~iv~ 420 (457)
T PRK10364 378 -----------------------------------GAGVKISVTDSGKGIAADQLEAIFTPYFTTKA--EGTGLGLAVVH 420 (457)
T ss_pred -----------------------------------CCeEEEEEEECCCCCCHHHHHHHhCccccCCC--CCCcccHHHHH
Confidence 12478999999999999999999999997653 59999999999
Q ss_pred HHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 609 SLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 609 ~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
++++.|||+|++++.+ +.||+|++.+|+.
T Consensus 421 ~~v~~~gG~i~i~s~~--~~Gt~f~i~lP~~ 449 (457)
T PRK10364 421 NIVEQHGGTIQVASQE--GKGATFTLWLPVN 449 (457)
T ss_pred HHHHHCCCEEEEEeCC--CCcEEEEEEecCC
Confidence 9999999999998875 3599999999875
No 22
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=2.5e-29 Score=292.47 Aligned_cols=213 Identities=21% Similarity=0.335 Sum_probs=175.3
Q ss_pred HHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecH-H
Q 042553 369 NKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV-G 447 (1131)
Q Consensus 369 ~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL-~ 447 (1131)
.+.+|.+++||||||||++|.+.++++..... . ....+....+++..+++++++++|.+........+.+++ .
T Consensus 136 ~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~--~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~ 209 (356)
T PRK10755 136 QERLFTADVAHELRTPLAGIRLHLELLEKQHH--I----DVAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLE 209 (356)
T ss_pred HHHHHHHHhhHhhcChHHHHHHHHHHHHhccc--h----hHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHH
Confidence 34568999999999999999999998653321 1 233445566789999999999999887666666678888 9
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC-eEEEEEeecCCCCCCCCC
Q 042553 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG-HISVRACVKKPSAIGNPS 526 (1131)
Q Consensus 448 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~ 526 (1131)
+++..++..+...+..+++.+.++..+.. ..+.+|+.+++||+.||++||+||+++| .|.|.+...
T Consensus 210 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~--------- 276 (356)
T PRK10755 210 DVILPSQDELSEMLEQRQQTLLLPESAAD----ITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQE--------- 276 (356)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEeccCCCc----eEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEc---------
Confidence 99999999999999999999988533222 3588999999999999999999999764 577765321
Q ss_pred CCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHH
Q 042553 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGI 606 (1131)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsI 606 (1131)
...+.|+|+|+|+||+++.++++|++|++.+...+|+||||+|
T Consensus 277 -------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~g~GlGL~i 319 (356)
T PRK10755 277 -------------------------------------DGGAVLAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSI 319 (356)
T ss_pred -------------------------------------CCEEEEEEEECCCCCCHHHHHHhCCCeEeCCCCCCCcCHHHHH
Confidence 1247899999999999999999999999987777899999999
Q ss_pred HHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 607 VQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 607 vk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
|+++++.|||+|+++|.++ +.||+|++.+|.
T Consensus 320 ~~~i~~~~gg~i~i~s~~~-~~Gt~~~i~~p~ 350 (356)
T PRK10755 320 VSRITQLHHGQFFLQNRQE-RSGTRAWVWLPK 350 (356)
T ss_pred HHHHHHHCCCEEEEEECCC-CCeEEEEEEecC
Confidence 9999999999999998764 259999998875
No 23
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=1.9e-29 Score=323.50 Aligned_cols=218 Identities=25% Similarity=0.442 Sum_probs=184.7
Q ss_pred HHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecH
Q 042553 368 MNKSLAFANASHDIRAALAGITGLIELCYVEAGP-GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV 446 (1131)
Q Consensus 368 ~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~-~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL 446 (1131)
+.|..|++.+||||||||++|.|+++++...... .....+.+..+...+.++.++++++|+++|++++.+.+..+++++
T Consensus 662 ~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~~L 741 (895)
T PRK10490 662 QLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWLTL 741 (895)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCH
Confidence 4467899999999999999999999987544322 233446688889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC-eEEEEEeecCCCCCCCC
Q 042553 447 GELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG-HISVRACVKKPSAIGNP 525 (1131)
Q Consensus 447 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~ 525 (1131)
.+++++++..+......+++.+.+.. +. +.+.+|+.+|.|||.|||+||+||+++| .|.|.+...
T Consensus 742 ~eli~~~l~~l~~~~~~~~i~l~~~~--~~----~~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~-------- 807 (895)
T PRK10490 742 EEVVGSALQMLEPGLSGHPINLSLPE--PL----TLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE-------- 807 (895)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCC--CC----eEEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe--------
Confidence 99999999999988887777766532 22 3588999999999999999999999876 566655321
Q ss_pred CCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC--CCCcccc
Q 042553 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG--EGGTGLG 603 (1131)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~--~~GtGLG 603 (1131)
...+.|+|.|+|+|||++.+++||+|||+.+.. .+|+|||
T Consensus 808 --------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~~~~G~GLG 849 (895)
T PRK10490 808 --------------------------------------GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKESAIPGVGLG 849 (895)
T ss_pred --------------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCCCCCCccHH
Confidence 125789999999999999999999999997653 4699999
Q ss_pred hHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 604 LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 604 LsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
|+|||++++.|||+|+++|.++ .||+|+|.+|+.
T Consensus 850 L~Ivk~ive~hGG~I~v~s~~~--~Gt~f~i~LPl~ 883 (895)
T PRK10490 850 LAICRAIVEVHGGTIWAENRPE--GGACFRVTLPLE 883 (895)
T ss_pred HHHHHHHHHHcCCEEEEEECCC--CeEEEEEEeECC
Confidence 9999999999999999998653 599999999985
No 24
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=9.5e-29 Score=296.60 Aligned_cols=212 Identities=21% Similarity=0.326 Sum_probs=178.5
Q ss_pred HHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHH
Q 042553 368 MNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447 (1131)
Q Consensus 368 ~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~ 447 (1131)
..+.+|++++||||||||+.|.+.++.+.......+....++..+...++++..++++++.++|++.+......+++++.
T Consensus 235 ~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~~~~~~~~~~~l~ 314 (449)
T PRK10337 235 VRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLE 314 (449)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCHH
Confidence 33457899999999999999999998764433333345567888999999999999999999999988776677899999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC-eEEEEEeecCCCCCCCCC
Q 042553 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG-HISVRACVKKPSAIGNPS 526 (1131)
Q Consensus 448 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~ 526 (1131)
+++++++..+...+..+++.+.++.++.. ..+.+|+..+.+++.||++||+||+++| .|.+.+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~----------- 379 (449)
T PRK10337 315 DLLQSAVMDIYHTAQQAGIDVRLTLNAHP----VIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLN----------- 379 (449)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCCCC----ceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEE-----------
Confidence 99999999999999999999998865432 3468999999999999999999999875 5665431
Q ss_pred CCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC-CCCCcccchH
Q 042553 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE-GEGGTGLGLG 605 (1131)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~-~~~GtGLGLs 605 (1131)
...++|.|+|+|||+++++++|+|||+.+. ..+|+||||+
T Consensus 380 ---------------------------------------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~ 420 (449)
T PRK10337 380 ---------------------------------------ARNFTVRDNGPGVTPEALARIGERFYRPPGQEATGSGLGLS 420 (449)
T ss_pred ---------------------------------------eeEEEEEECCCCCCHHHHHHhcccccCCCCCCCCccchHHH
Confidence 115899999999999999999999999754 3469999999
Q ss_pred HHHHHHHHhCCEEEEEeecCCCccEEEEEE
Q 042553 606 IVQSLVRLMGGDIEIVDKENGERGTCFRFN 635 (1131)
Q Consensus 606 Ivk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~ 635 (1131)
||++++++|||+|++++.++ .|++|++.
T Consensus 421 iv~~i~~~~gg~l~~~s~~~--~G~~~~i~ 448 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNAPE--GGFEAKVS 448 (449)
T ss_pred HHHHHHHHcCCEEEEEecCC--CeEEEEEe
Confidence 99999999999999988653 58988875
No 25
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.97 E-value=1.7e-28 Score=295.59 Aligned_cols=218 Identities=22% Similarity=0.359 Sum_probs=186.5
Q ss_pred HHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecH
Q 042553 367 SMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDV 446 (1131)
Q Consensus 367 ~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL 446 (1131)
...+..|.+++||||||||+.|.+.++.+...... ...+.+..+...+.+|..++++++++++.+.+...+..+++++
T Consensus 237 ~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~--~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~~~~~~~~~~~~~ 314 (466)
T PRK10549 237 EQMRRDFMADISHELRTPLAVLRGELEAIQDGVRK--FTPESVASLQAEVGTLTKLVDDLHQLSLSDEGALAYRKTPVDL 314 (466)
T ss_pred HHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCCH
Confidence 34466789999999999999999999987654322 2234577788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCCCCCC
Q 042553 447 GELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNP 525 (1131)
Q Consensus 447 ~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~ 525 (1131)
.+++++++..++.....+++++.++.++. ..+.+|+.++.|++.|||+||+||+++ |.|.|.+...
T Consensus 315 ~~~l~~~~~~~~~~~~~~~i~i~~~~~~~-----~~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~~-------- 381 (466)
T PRK10549 315 VPLLEVAGGAFRERFASRGLTLQLSLPDS-----ATVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQR-------- 381 (466)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEEecCCC-----cEEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc--------
Confidence 99999999999999999999999887543 246799999999999999999999986 5677765321
Q ss_pred CCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC----CCCcc
Q 042553 526 SLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGTG 601 (1131)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~----~~GtG 601 (1131)
...+.|.|.|+|+|||++.++++|+|||+.+.. .+|+|
T Consensus 382 --------------------------------------~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~G 423 (466)
T PRK10549 382 --------------------------------------DKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSG 423 (466)
T ss_pred --------------------------------------CCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCc
Confidence 125789999999999999999999999998653 36999
Q ss_pred cchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 602 LGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 602 LGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
|||+|||+++++|||++++++.++ .|++|+|.+|+.
T Consensus 424 lGL~iv~~i~~~~~G~l~~~s~~~--~G~~~~i~lP~~ 459 (466)
T PRK10549 424 LGLAICLNIVEAHNGRIIAAHSPF--GGVSITVELPLE 459 (466)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCC--CeEEEEEEccCC
Confidence 999999999999999999998753 599999999874
No 26
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=4.1e-29 Score=301.63 Aligned_cols=211 Identities=21% Similarity=0.346 Sum_probs=162.9
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGP--GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~--~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~ 447 (1131)
..++++.++|||||||++|.|+++++...... .......+..+...+.++...+.++++ ........+||+.
T Consensus 276 l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~dl~ 349 (494)
T TIGR02938 276 IRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP------QSPQEIVVPVNLN 349 (494)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc------cCcccccccccHH
Confidence 34567889999999999999999987543221 223334444444344434344444432 2333446789999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCe-----EEEEEeecCCCCC
Q 042553 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGH-----ISVRACVKKPSAI 522 (1131)
Q Consensus 448 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~-----I~v~~~~~~~~~~ 522 (1131)
+++++++..+...+..+++.+.++.+... +.+.+|+.+|+|||.||++||+||++.+. |.+....
T Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~------ 419 (494)
T TIGR02938 350 QILRDVITLSTPRLLAAGIVVDWQPAATL----PAILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTAL------ 419 (494)
T ss_pred HHHHHHHHHhHHHHHhCCCEEEEecCCCC----CeeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEe------
Confidence 99999999999999999999998876443 35889999999999999999999997652 3333211
Q ss_pred CCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC-CCCcc
Q 042553 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG-EGGTG 601 (1131)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~-~~GtG 601 (1131)
....+.|+|+|||+|||++.+++||+|||+.+.. .+|+|
T Consensus 420 ----------------------------------------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~G~G 459 (494)
T TIGR02938 420 ----------------------------------------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGSRKHIG 459 (494)
T ss_pred ----------------------------------------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCCCCCCc
Confidence 1125789999999999999999999999998764 47999
Q ss_pred cchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 602 LGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 602 LGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
|||+|||+||++|||+|+++|.+ ++||+|+|++|+
T Consensus 460 lGL~i~~~iv~~~gG~i~~~s~~--~~G~~f~i~lp~ 494 (494)
T TIGR02938 460 MGLSVAQEIVADHGGIIDLDDDY--SEGCRIIVEFRV 494 (494)
T ss_pred ccHHHHHHHHHHcCCEEEEEECC--CCCEEEEEEecC
Confidence 99999999999999999998876 469999999985
No 27
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=3.8e-28 Score=291.27 Aligned_cols=212 Identities=27% Similarity=0.455 Sum_probs=182.0
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~l 449 (1131)
...+.+++||||||||+.+.+.++.+.......++..+.++.+.....+|..++++++++++++.....+..+++++.++
T Consensus 241 ~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01386 241 LSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNGQLALERVRLDLAAE 320 (457)
T ss_pred HHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCHHHH
Confidence 34578899999999999999999986544434455667788888888999999999999999999988888899999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCCCCCCCCC
Q 042553 450 LEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPSLS 528 (1131)
Q Consensus 450 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~ 528 (1131)
++++++.+.+.+.++++++.++.+ ..+.+|+..|.+++.||++||+||+++ |.|.|++...
T Consensus 321 ~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~~----------- 382 (457)
T TIGR01386 321 LAKVAEYFEPLAEERGVRIRVEGE-------GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIERR----------- 382 (457)
T ss_pred HHHHHHHHHHHHHhCCeEEEecCC-------ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEec-----------
Confidence 999999999999999998887643 237899999999999999999999976 5677765421
Q ss_pred CCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC----CCCCcccch
Q 042553 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE----GEGGTGLGL 604 (1131)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~----~~~GtGLGL 604 (1131)
...+.|+|.|+|+|||++.++++|++||+.+. ..+|+||||
T Consensus 383 -----------------------------------~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL 427 (457)
T TIGR01386 383 -----------------------------------SDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGL 427 (457)
T ss_pred -----------------------------------CCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccH
Confidence 12578999999999999999999999999765 246999999
Q ss_pred HHHHHHHHHhCCEEEEEeecCCCccEEEEEEEe
Q 042553 605 GIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637 (1131)
Q Consensus 605 sIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~ 637 (1131)
+|||++++.|||+|++.+ + +.||+|++.+|
T Consensus 428 ~i~~~~~~~~~G~~~~~~-~--~~G~~~~~~~P 457 (457)
T TIGR01386 428 AIVRSIMEAHGGRASAES-P--DGKTRFILRFP 457 (457)
T ss_pred HHHHHHHHHCCCEEEEEe-C--CCceEEEEecC
Confidence 999999999999999987 5 36999999875
No 28
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.96 E-value=5e-27 Score=282.26 Aligned_cols=214 Identities=25% Similarity=0.399 Sum_probs=177.3
Q ss_pred HHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHH
Q 042553 368 MNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447 (1131)
Q Consensus 368 ~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~ 447 (1131)
..+.+|++++||||||||+.|.+..+++...... ...+..+...+++|..+++++++++|.+.. ..+..+.+++.
T Consensus 241 ~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~----~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~-~~~~~~~~~l~ 315 (461)
T PRK09470 241 TSQQRLLSDISHELRTPLTRLQLATALLRRRQGE----SKELERIETEAQRLDSMINDLLVLSRNQQK-NHLERETFKAN 315 (461)
T ss_pred HHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccceecHH
Confidence 3455788999999999999999998876543222 124667888899999999999999998765 35677899999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCC
Q 042553 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527 (1131)
Q Consensus 448 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~ 527 (1131)
++++++++.+...+..+++.+.++..+.. ..+.+|+..|.|++.||++||+||++ +.|.|++...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~---------- 380 (461)
T PRK09470 316 SLWSEVLEDAKFEAEQMGKSLTVSAPPGP----WPINGNPNALASALENIVRNALRYSH-TKIEVAFSVD---------- 380 (461)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEecCCcc----eEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEE----------
Confidence 99999999998888889999988733322 35889999999999999999999986 4566665321
Q ss_pred CCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC----CCCCcccc
Q 042553 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE----GEGGTGLG 603 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~----~~~GtGLG 603 (1131)
...+.|+|.|+|+||+++.++++|+|||+.+. ..+|+|||
T Consensus 381 ------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlG 424 (461)
T PRK09470 381 ------------------------------------KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLG 424 (461)
T ss_pred ------------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchh
Confidence 12478999999999999999999999999764 23699999
Q ss_pred hHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 604 LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 604 LsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
|+||+++++.|||++.+.+.++ .||+|++.+|+.
T Consensus 425 L~iv~~~v~~~~G~l~~~s~~~--~Gt~~~i~lp~~ 458 (461)
T PRK09470 425 LAIVENAIQQHRGWVKAEDSPL--GGLRLTIWLPLY 458 (461)
T ss_pred HHHHHHHHHHCCCEEEEEECCC--CeEEEEEEeeCC
Confidence 9999999999999999988754 599999999874
No 29
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=1e-26 Score=280.13 Aligned_cols=215 Identities=28% Similarity=0.470 Sum_probs=185.4
Q ss_pred HHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHH
Q 042553 369 NKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGE 448 (1131)
Q Consensus 369 ~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ 448 (1131)
...+|++.++||||||++.|.+.++++... ...++..+.+..+...++++..++++++++++++........+++++.+
T Consensus 255 ~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (475)
T PRK11100 255 YVEQYVQTLTHELKSPLAAIRGAAELLQED-PPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAA 333 (475)
T ss_pred HHHHHHHHhhhhhcCcHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHH
Confidence 345688999999999999999999987543 2345677889999999999999999999999999888877789999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCCCCCCCC
Q 042553 449 LLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPSL 527 (1131)
Q Consensus 449 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~ 527 (1131)
++++++..+...+.++++++.++.++ ..+.+|...|.+++.||+.||+||+.+ |.|.|++...
T Consensus 334 ~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~---------- 397 (475)
T PRK11100 334 LLEELVEAREAQAAAKGITLRLRPDD------ARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD---------- 397 (475)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeCCC------ceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc----------
Confidence 99999999999999999999987652 347889999999999999999999965 6777766421
Q ss_pred CCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC---CCCCcccch
Q 042553 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE---GEGGTGLGL 604 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~---~~~GtGLGL 604 (1131)
...+.++|+|+|+|||+++++++|++|++.+. ..+|+||||
T Consensus 398 ------------------------------------~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL 441 (475)
T PRK11100 398 ------------------------------------GEQVALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGL 441 (475)
T ss_pred ------------------------------------CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhH
Confidence 12578999999999999999999999998643 346999999
Q ss_pred HHHHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 605 GIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 605 sIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
.||++++++|||+|.++|.++ .||+|.+.+|.
T Consensus 442 ~i~~~~~~~~~G~i~i~s~~~--~Gt~v~i~lp~ 473 (475)
T PRK11100 442 AFVREVARLHGGEVTLRNRPE--GGVLATLTLPR 473 (475)
T ss_pred HHHHHHHHHCCCEEEEEEcCC--CeEEEEEEeeC
Confidence 999999999999999988653 59999998875
No 30
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.96 E-value=4.5e-27 Score=280.81 Aligned_cols=209 Identities=26% Similarity=0.368 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeee
Q 042553 365 RKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDF 444 (1131)
Q Consensus 365 ~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~ 444 (1131)
+..+.+..|++++||||||||+.|.+.++++..+ .....+.+....++|..++++++++.|.+.+ ...+++
T Consensus 224 ~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~------~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~~---~~~~~~ 294 (435)
T PRK09467 224 QLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE------DGYLAESINKDIEECNAIIEQFIDYLRTGQE---MPMEMA 294 (435)
T ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCcccc
Confidence 3445577899999999999999999988875321 1223456778889999999999999987653 345789
Q ss_pred cHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCC
Q 042553 445 DVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN 524 (1131)
Q Consensus 445 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~ 524 (1131)
++.+++++++..+. ..+..+.++.+... ..+.+|+..|+|++.||++||+||+ .|.|.|.+...
T Consensus 295 ~l~~~~~~~~~~~~----~~~~~i~~~~~~~~----~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~------- 358 (435)
T PRK09467 295 DLNALLGEVIAAES----GYEREIETALQPGP----IEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE------- 358 (435)
T ss_pred CHHHHHHHHHHHhh----hcCCeEEEecCCCC----ceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec-------
Confidence 99999999987664 24445555443322 2588999999999999999999998 56677765321
Q ss_pred CCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC--CCCccc
Q 042553 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG--EGGTGL 602 (1131)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~--~~GtGL 602 (1131)
...+.|+|.|+|+||+++.++++|+||++.+.. .+|+||
T Consensus 359 ---------------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~~~~g~Gl 399 (435)
T PRK09467 359 ---------------------------------------GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSARGSSGTGL 399 (435)
T ss_pred ---------------------------------------CCEEEEEEEecCCCcCHHHHHHhcCCcccCCCCCCCCCeeh
Confidence 125789999999999999999999999997653 469999
Q ss_pred chHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 603 GLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 603 GLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
||+||+++++.|||+|.+.+.++ .|++|++.+|++
T Consensus 400 GL~iv~~i~~~~~g~l~i~~~~~--~G~~~~i~lp~~ 434 (435)
T PRK09467 400 GLAIVKRIVDQHNGKVELGNSEE--GGLSARAWLPLT 434 (435)
T ss_pred hHHHHHHHHHHCCCEEEEEECCC--CcEEEEEEEeCC
Confidence 99999999999999999987653 599999999864
No 31
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.95 E-value=2.6e-27 Score=271.66 Aligned_cols=222 Identities=24% Similarity=0.336 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 042553 362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVE--AGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQL 439 (1131)
Q Consensus 362 ~ae~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~--~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l 439 (1131)
+.||.+..-..|...+||+||.||+.|.++++++.++ ...+++..+++..+.+.+..|..||++++.+|++..-...+
T Consensus 516 ~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~l 595 (750)
T COG4251 516 ELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAPL 595 (750)
T ss_pred HHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC
Confidence 3455565666788899999999999999999998776 55677888999999999999999999999999997655544
Q ss_pred eeeeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC--eEEEEEeec
Q 042553 440 IEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG--HISVRACVK 517 (1131)
Q Consensus 440 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G--~I~v~~~~~ 517 (1131)
.+.|+.+++.+++........+.++++.+.+- +.|.+|+.++.|++.||+.|||||..++ .|.|....
T Consensus 596 --~~td~~~vv~~vl~~l~~ri~dtgaei~i~~l-------p~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r- 665 (750)
T COG4251 596 --QPTDVQKVVDKVLLELSQRIADTGAEIRIAPL-------PVVAADATQLGQVFQNLIANAIKFGGPENPDIEISAER- 665 (750)
T ss_pred --CCcchHHHHHHHHHhcccccccccceEEeccc-------ceeecCHHHHHHHHHHHHhhheecCCCCCCceEEeeec-
Confidence 58999999999999999999999999988752 4588999999999999999999998765 35554321
Q ss_pred CCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC--
Q 042553 518 KPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE-- 595 (1131)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~-- 595 (1131)
.+..+.|.|.|+|+||+++..++||..|.+...
T Consensus 666 ---------------------------------------------~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~ 700 (750)
T COG4251 666 ---------------------------------------------QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRD 700 (750)
T ss_pred ---------------------------------------------cCCceEEEecCCCCCcCHHHHHHHHHHHHhcCchh
Confidence 112478999999999999999999999998754
Q ss_pred CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 596 GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 596 ~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
.+.||||||+|||+|++.|+|.|+|++.. |.|+||.|++|...
T Consensus 701 ~y~gtG~GL~I~kkI~e~H~G~i~vEs~~--gEgsTF~f~lp~~~ 743 (750)
T COG4251 701 EYLGTGLGLAICKKIAERHQGRIWVESTP--GEGSTFYFTLPVGG 743 (750)
T ss_pred hhcCCCccHHHHHHHHHHhCceEEEeecC--CCceeEEEEeecCC
Confidence 46799999999999999999999999976 46999999998754
No 32
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.95 E-value=4.3e-27 Score=250.49 Aligned_cols=218 Identities=26% Similarity=0.353 Sum_probs=170.5
Q ss_pred HHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHH
Q 042553 372 LAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLE 451 (1131)
Q Consensus 372 ~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~ 451 (1131)
..+.+++||||+||.+|+|.+++|.... +++..+++.+.|...++||..|++.+.-|+- .-.....++++.++++
T Consensus 134 ~L~r~LAHEIKNPL~GiRGAAQLLe~~l-pd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~VLe 208 (363)
T COG3852 134 GLVRGLAHEIKNPLGGIRGAAQLLERAL-PDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHEVLE 208 (363)
T ss_pred HHHHHHHHHhcCcccchhhHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHHHHH
Confidence 4568999999999999999999986554 3344788899999999999999999866653 2234456899999999
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccC---C--CeEEEEEeecCCCCCCCCC
Q 042553 452 DVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS---E--GHISVRACVKKPSAIGNPS 526 (1131)
Q Consensus 452 ~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~---~--G~I~v~~~~~~~~~~~~~~ 526 (1131)
.+.......+ ..++.+.-|.++. .+.|++|+++|.|++.||+.||+..-. . |.|+++......-.
T Consensus 209 rV~~lv~~e~-~~~i~l~rdYDPS----LP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~----- 278 (363)
T COG3852 209 RVRALVEAEF-ADNVRLIRDYDPS----LPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLT----- 278 (363)
T ss_pred HHHHHHhccc-CCceEEeecCCCC----CccccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEE-----
Confidence 9988776443 4567776665543 356999999999999999999999865 3 67777642110000
Q ss_pred CCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHH
Q 042553 527 LSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGI 606 (1131)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsI 606 (1131)
.........+.++|.|+|+|||++.++++|.||...+. +||||||+|
T Consensus 279 -------------------------------i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~--~GsGLGLal 325 (363)
T COG3852 279 -------------------------------IAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGRE--GGTGLGLAL 325 (363)
T ss_pred -------------------------------ccCceeEeeeeeEEecCCCCCChHHhhhccccccccCC--CCccccHHH
Confidence 00011223467899999999999999999999998765 699999999
Q ss_pred HHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 607 VQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 607 vk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
+++|+..|||.|+++|.++ .|+|++.+|+..
T Consensus 326 a~~li~qH~G~Ie~~S~Pg---~T~FrvllP~~~ 356 (363)
T COG3852 326 AQNLIDQHGGKIEFDSWPG---RTVFRVLLPIRK 356 (363)
T ss_pred HHHHHHhcCCEEEEeccCC---ceEEEEEeeccc
Confidence 9999999999999998752 799999988753
No 33
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.95 E-value=1.9e-26 Score=263.73 Aligned_cols=214 Identities=29% Similarity=0.426 Sum_probs=183.3
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVE-AGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGE 448 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~-~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ 448 (1131)
+..|++.++|||||||++|.++++++... ....+...++++.|..++.+|..++++++++++++.+......+++++.+
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~ 193 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPA 193 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHHH
Confidence 34688999999999999999999987544 23345567789999999999999999999999999988888889999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCCCCCCCC
Q 042553 449 LLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPSL 527 (1131)
Q Consensus 449 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~ 527 (1131)
++..++..+...+..+++.+.++... . ..+.+|+..|.+||.||+.||+||++. +.|.|.+...
T Consensus 194 ~i~~~~~~~~~~~~~~~i~i~~~~~~-~----~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~---------- 258 (333)
T TIGR02966 194 LLDHLRDEAEALSQGKNHQITFEIDG-G----VDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRD---------- 258 (333)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEcCCC-C----ceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEc----------
Confidence 99999999999999999999988732 2 458899999999999999999999875 4566655321
Q ss_pred CCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC----CCCCcccc
Q 042553 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE----GEGGTGLG 603 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~----~~~GtGLG 603 (1131)
...+.|.|.|+|+||+++.++++|++|++.+. ..+|+|||
T Consensus 259 ------------------------------------~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glG 302 (333)
T TIGR02966 259 ------------------------------------GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLG 302 (333)
T ss_pred ------------------------------------CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCccc
Confidence 11478999999999999999999999998654 24699999
Q ss_pred hHHHHHHHHHhCCEEEEEeecCCCccEEEEEEE
Q 042553 604 LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636 (1131)
Q Consensus 604 LsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l 636 (1131)
|+||+++++.|||+|++.|.+ +.||+|++.+
T Consensus 303 L~~~~~~~~~~gG~i~~~s~~--~~Gt~~~i~l 333 (333)
T TIGR02966 303 LAIVKHVLSRHHARLEIESEL--GKGSTFSFIF 333 (333)
T ss_pred HHHHHHHHHHCCCEEEEEecC--CCCeEEEEEC
Confidence 999999999999999998875 4699999864
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=3.8e-26 Score=264.63 Aligned_cols=216 Identities=23% Similarity=0.352 Sum_probs=168.6
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~l 449 (1131)
...|.+.+||||||||++|.|+++++.... .+++.+++++.+...+++|..++++++++.+... ...+++..+
T Consensus 130 ~~~~~~~iaHelr~pL~~i~~~~~~l~~~~-~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~~ 202 (348)
T PRK11073 130 ARDLVRGLAHEIKNPLGGLRGAAQLLSKAL-PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHKV 202 (348)
T ss_pred HHHHHHhhhHhhcChHHHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHHH
Confidence 456889999999999999999999875443 3456788899999999999999999998765432 356799999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhcc-C-CCeEEEEEeecCCCCCCCCCC
Q 042553 450 LEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFT-S-EGHISVRACVKKPSAIGNPSL 527 (1131)
Q Consensus 450 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT-~-~G~I~v~~~~~~~~~~~~~~~ 527 (1131)
++.+...+.... .+++.+.++.++.. +.+.+|+.+|.||+.||++||+||+ + .|.|.+.+.......
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~----~~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~------ 271 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSL----PELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT------ 271 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCC----CceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc------
Confidence 999888877554 46788877655432 3478999999999999999999997 3 456666542110000
Q ss_pred CCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHH
Q 042553 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIV 607 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIv 607 (1131)
.........+.++|.|+|+||+++.++++|+|||+.+. +|+||||+||
T Consensus 272 ------------------------------~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~--~g~GlGL~i~ 319 (348)
T PRK11073 272 ------------------------------LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE--GGTGLGLSIA 319 (348)
T ss_pred ------------------------------cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC--CCccCCHHHH
Confidence 00001112467999999999999999999999998653 6999999999
Q ss_pred HHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 608 QSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 608 k~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
|++|+.|||+|+++|.+ + |++|++.+|+
T Consensus 320 ~~iv~~~gG~i~~~s~~--~-~~~f~i~lP~ 347 (348)
T PRK11073 320 RNLIDQHSGKIEFTSWP--G-HTEFSVYLPI 347 (348)
T ss_pred HHHHHHcCCeEEEEecC--C-ceEEEEEEec
Confidence 99999999999998764 3 5999999875
No 35
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=7.8e-24 Score=262.05 Aligned_cols=210 Identities=26% Similarity=0.417 Sum_probs=178.1
Q ss_pred HHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHH
Q 042553 372 LAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLE 451 (1131)
Q Consensus 372 ~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~ 451 (1131)
.++++++|||||||+.|.++++++... ....+..+.++.+...+++|..++++++++++.+... .+++++..+++
T Consensus 392 ~~~~~~~hel~~~l~~i~~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~ 466 (607)
T PRK11360 392 ELVAGVAHEIRNPLTAIRGYVQIWRQQ-TSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRESQ----WQPVSLNALVE 466 (607)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCc----cceecHHHHHH
Confidence 578999999999999999999987544 3345677889999999999999999999999876433 47899999999
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCCCCCCCCCCC
Q 042553 452 DVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPSLSSS 530 (1131)
Q Consensus 452 ~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~~~ 530 (1131)
++...+...+..+++.+.++.++.. ..+.+|+..|.|++.||+.||+||++. |.|.|++....
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~------------ 530 (607)
T PRK11360 467 EVLQLFQTAGVQARVDFETELDNEL----PPIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYS------------ 530 (607)
T ss_pred HHHHHHHHhhhccCcEEEEEcCCCC----CeEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcC------------
Confidence 9999999888889999888765432 347889999999999999999999864 57777654211
Q ss_pred ccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHHH
Q 042553 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSL 610 (1131)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~L 610 (1131)
...+.|+|+|+|+|||++.++++|+||++.+. .|+||||++||++
T Consensus 531 ---------------------------------~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~--~g~glGL~~~~~~ 575 (607)
T PRK11360 531 ---------------------------------DGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA--KGTGLGLALSQRI 575 (607)
T ss_pred ---------------------------------CCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC--CCCchhHHHHHHH
Confidence 11278999999999999999999999998664 5899999999999
Q ss_pred HHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 611 VRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 611 v~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
+++|||+|+++|.+ |+||+|++.+|+.
T Consensus 576 ~~~~~G~i~~~s~~--~~Gt~~~i~lp~~ 602 (607)
T PRK11360 576 INAHGGDIEVESEP--GVGTTFTLYLPIN 602 (607)
T ss_pred HHHcCCEEEEEEcC--CCceEEEEEecCC
Confidence 99999999998865 4699999999874
No 36
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.93 E-value=2.9e-24 Score=243.33 Aligned_cols=216 Identities=39% Similarity=0.623 Sum_probs=180.9
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CcceeeeecHHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGK-MQLIEEDFDVGE 448 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~-~~l~~~~~dL~~ 448 (1131)
+..|++.++||+|||++.+.+.++++... ........+..+....+++..++++++++++++.+. .....+.+++..
T Consensus 115 ~~~~~~~~~hel~~pl~~i~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 115 KREFLANISHELRTPLTAIRGLLELLLEG--LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHhhhhhhcCcHHHHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 66889999999999999999988854322 111156677788889999999999999999998873 444467888999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCC
Q 042553 449 LLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528 (1131)
Q Consensus 449 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~ 528 (1131)
++++++..+...+..+++.+....+. ...+.+|+.+++|||.||++||+||++.+.|.|.+....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~---------- 257 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLPE-----LPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDD---------- 257 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCC-----CceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecC----------
Confidence 99999999999888888888865541 145889999999999999999999999667777664211
Q ss_pred CCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHH
Q 042553 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQ 608 (1131)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk 608 (1131)
..+.++|.|+|+||+++.++++|++|++.+....|+||||+|||
T Consensus 258 ------------------------------------~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~g~GlGL~i~~ 301 (336)
T COG0642 258 ------------------------------------EQVTISVEDTGPGIPEEELERIFEPFFRTDKSRSGTGLGLAIVK 301 (336)
T ss_pred ------------------------------------CeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCCCCCccHHHHH
Confidence 15789999999999999999999999999886669999999999
Q ss_pred HHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 609 SLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 609 ~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
++++.|||+|.+.+.+ +.||+|++++|...
T Consensus 302 ~~~~~~~g~i~~~~~~--~~Gt~~~i~lP~~~ 331 (336)
T COG0642 302 RIVELHGGTISVESEP--GKGTTFTIRLPLAP 331 (336)
T ss_pred HHHHHcCCEEEEEecC--CCceEEEEEEeccc
Confidence 9999999999998865 46899999998764
No 37
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.92 E-value=1.2e-23 Score=265.04 Aligned_cols=202 Identities=22% Similarity=0.321 Sum_probs=160.7
Q ss_pred HHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHH
Q 042553 371 SLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELL 450 (1131)
Q Consensus 371 s~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll 450 (1131)
.++.+.++||||||++.+..+.+.........+..++.++.+.++.++|.++++++.+. ....+.+++++.+++
T Consensus 476 ~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~------~~~~~~~~~~l~~ll 549 (679)
T TIGR02916 476 NRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSK------GLEEEKLCVDLVDLL 549 (679)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccCCccccHHHHH
Confidence 35678899999999999998887655443333445667888888899999888876433 234566789999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCCCCCCCCCC
Q 042553 451 EDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPSLSS 529 (1131)
Q Consensus 451 ~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~~ 529 (1131)
+++.+.+... ...+++.++ .+ ..+.+|+.++.||+.||++||+||+++ |.|.|++...
T Consensus 550 ~~~~~~~~~~--~~~~~l~~~--~~-----~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~------------ 608 (679)
T TIGR02916 550 RRAIASKRAQ--GPRPEVSID--TD-----LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVERE------------ 608 (679)
T ss_pred HHHHHHhhhh--cCCceEEeC--CC-----ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEc------------
Confidence 9999876542 344455542 22 347899999999999999999999975 5788776421
Q ss_pred CccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcch-HhhhccCCeecCCCCCCcccchHHHH
Q 042553 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK-RKTVFENYVQVKEGEGGTGLGLGIVQ 608 (1131)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~-~~~IFe~F~q~~~~~~GtGLGLsIvk 608 (1131)
...+.|+|.|+|+|||++. ++++|+||++.+. +|+||||+|||
T Consensus 609 ----------------------------------~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~--~G~GLGL~i~~ 652 (679)
T TIGR02916 609 ----------------------------------CGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG--AGMGIGVYECR 652 (679)
T ss_pred ----------------------------------CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC--CCcchhHHHHH
Confidence 1257899999999999999 9999999998765 69999999999
Q ss_pred HHHHHhCCEEEEEeecCCCccEEEEEEEe
Q 042553 609 SLVRLMGGDIEIVDKENGERGTCFRFNVF 637 (1131)
Q Consensus 609 ~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~ 637 (1131)
++++.|||+|+++|.+ |+||+|++.+|
T Consensus 653 ~iv~~~gG~i~v~s~~--g~Gt~f~i~LP 679 (679)
T TIGR02916 653 QYVEEIGGRIEVESTP--GQGTIFTLVLP 679 (679)
T ss_pred HHHHHcCCEEEEEecC--CCceEEEEEeC
Confidence 9999999999998865 46999999875
No 38
>PRK13560 hypothetical protein; Provisional
Probab=99.90 E-value=6e-23 Score=263.92 Aligned_cols=206 Identities=17% Similarity=0.193 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 042553 360 TQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQL 439 (1131)
Q Consensus 360 ~~~ae~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l 439 (1131)
.++.+++...|..|+++|||||||||++|.|+++++..... +++....+..+......|..+++.++.. .
T Consensus 595 E~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~ 664 (807)
T PRK13560 595 EEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLH-DEEAKCAFAESQDRICAMALAHEKLYQS---------E 664 (807)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHhcc---------c
Confidence 34445556678899999999999999999999998654433 3444555555554444555444444321 2
Q ss_pred eeeeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC----CeEEEEEe
Q 042553 440 IEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE----GHISVRAC 515 (1131)
Q Consensus 440 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~ 515 (1131)
...++++.+++++++..+......++..+.+..+.... .....+...+.|||.||++||+||+.. |.|.|.+.
T Consensus 665 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~ 741 (807)
T PRK13560 665 DLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDG---CLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIR 741 (807)
T ss_pred cchhccHHHHHHHHHHHHHHHhccccCceEEEEecCcc---ccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEE
Confidence 34678999999999999888776665555444332221 112346667899999999999999853 45666543
Q ss_pred ecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC
Q 042553 516 VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595 (1131)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~ 595 (1131)
.. ....+.|+|+|||+|||++..
T Consensus 742 ~~---------------------------------------------~~~~v~i~V~D~G~GI~~~~~------------ 764 (807)
T PRK13560 742 EQ---------------------------------------------GDGMVNLCVADDGIGLPAGFD------------ 764 (807)
T ss_pred Ec---------------------------------------------CCCEEEEEEEeCCCcCCcccc------------
Confidence 21 112588999999999999732
Q ss_pred CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 596 GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 596 ~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
...|+||||+|||+||++|||+|+|+|. +||+|+|++|+.
T Consensus 765 ~~~~~gLGLai~~~iv~~~gG~I~v~S~----~Gt~F~i~lP~~ 804 (807)
T PRK13560 765 FRAAETLGLQLVCALVKQLDGEIALDSR----GGARFNIRFPMS 804 (807)
T ss_pred ccccCCccHHHHHHHHHHcCCEEEEEcC----CceEEEEEecCC
Confidence 1247899999999999999999999872 599999999874
No 39
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.90 E-value=3.9e-21 Score=236.00 Aligned_cols=194 Identities=25% Similarity=0.308 Sum_probs=133.6
Q ss_pred HHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHH
Q 042553 371 SLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELL 450 (1131)
Q Consensus 371 s~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll 450 (1131)
..+++.+||||||||++|.|++++... ++..+++..+ +.+....++++++..+ . .++
T Consensus 340 ~~~l~~~sHel~npL~~I~g~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~-----~~~ 396 (542)
T PRK11086 340 ADALRAQSHEFMNKLHVILGLLHLKSY-----DQLEDYILKT---ANNYQEEIGSLLGKIK----------S-----PVI 396 (542)
T ss_pred HHHHHhhchhhcCHHHHHHHHHHhCch-----HHHHHHHHHH---HHHHHHHHHHHHHhcc----------C-----HHH
Confidence 345688999999999999999886321 2333333322 2222223333332111 0 112
Q ss_pred HHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccC---CCeEEEEEeecCCCCCCCCCC
Q 042553 451 EDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS---EGHISVRACVKKPSAIGNPSL 527 (1131)
Q Consensus 451 ~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~---~G~I~v~~~~~~~~~~~~~~~ 527 (1131)
...+......+.++++.+.++.+...+. .....+...|.||+.||++||+||++ .|.|.|++...
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~---------- 464 (542)
T PRK11086 397 AGFLLGKISRARELGITLIISEDSQLPD--SGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR---------- 464 (542)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCc--ccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc----------
Confidence 2222223345777899888876533211 11223456899999999999999964 35676665321
Q ss_pred CCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHH
Q 042553 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIV 607 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIv 607 (1131)
...+.|+|+|+|+|||++.++++|+||++.+. +|+||||+||
T Consensus 465 ------------------------------------~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~--~g~GlGL~iv 506 (542)
T PRK11086 465 ------------------------------------NGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG--SNRGVGLYLV 506 (542)
T ss_pred ------------------------------------CCEEEEEEEECCCCCCHHHHHHHHhCCCccCC--CCCcCcHHHH
Confidence 12578999999999999999999999997653 5999999999
Q ss_pred HHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 608 QSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 608 k~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
|++++.|||+|++++.+ +.|++|+|.+|+.
T Consensus 507 ~~iv~~~~G~i~v~s~~--~~G~~f~i~lP~~ 536 (542)
T PRK11086 507 KQSVENLGGSIAVESEP--GVGTQFFVQIPWD 536 (542)
T ss_pred HHHHHHcCCEEEEEeCC--CCcEEEEEEEeCC
Confidence 99999999999998865 4699999999875
No 40
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.89 E-value=6.3e-21 Score=230.84 Aligned_cols=193 Identities=13% Similarity=0.207 Sum_probs=150.6
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~l 449 (1131)
+.++.+.++||+||||++|.+.++++.......++.++..+.|.+.+.++.+.++++++..+- ...+++++.+.
T Consensus 302 r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L~~~ 375 (495)
T PRK11644 302 RRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTLEQA 375 (495)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCHHHH
Confidence 445667889999999999999999875533334456677888899999999999999865542 12457899999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCCC
Q 042553 450 LEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSS 529 (1131)
Q Consensus 450 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~ 529 (1131)
++++++.+.......++++.++.++.. ...+|+..+.|++.|+++||+||++.|.|.|++...
T Consensus 376 l~~l~~~l~~~~~~~~v~l~~~~~~~~-----l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~------------ 438 (495)
T PRK11644 376 IRSLMREMELEDRGIVSHLDWRIDESA-----LSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQ------------ 438 (495)
T ss_pred HHHHHHHHHHhhcCceEEEEecCCccc-----CChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEc------------
Confidence 999998887655444555555443321 245678899999999999999999988887766421
Q ss_pred CccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHH
Q 042553 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQS 609 (1131)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~ 609 (1131)
+..+.++|+|+|+|||+++ .|+|+||+|||+
T Consensus 439 ----------------------------------~~~i~l~V~DnG~Gi~~~~---------------~~~GLGL~ivr~ 469 (495)
T PRK11644 439 ----------------------------------DERLMLVIEDDGSGLPPGS---------------GQQGFGLRGMRE 469 (495)
T ss_pred ----------------------------------CCEEEEEEEECCCCCCcCC---------------CCCCCcHHHHHH
Confidence 1257899999999998762 478999999999
Q ss_pred HHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 610 LVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 610 Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
+++.|||+|+++| +.||+|++++|.
T Consensus 470 iv~~~GG~i~v~S----~~Gt~f~I~LP~ 494 (495)
T PRK11644 470 RVTALGGTLTISC----THGTRLSVSLPQ 494 (495)
T ss_pred HHHHcCCEEEEEc----CCCEEEEEEEeC
Confidence 9999999999977 359999999874
No 41
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.87 E-value=1.6e-21 Score=224.11 Aligned_cols=203 Identities=26% Similarity=0.342 Sum_probs=162.9
Q ss_pred chHhhHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHH
Q 042553 377 ASHDIRAALAGITGLIELCYVEAGP-----GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLE 451 (1131)
Q Consensus 377 iSHELRTPLt~I~g~~ell~~~~~~-----~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~ 451 (1131)
++||||+|||-|.-.+|.+.....+ .+..+++.+.|.+...++.+|+++.-.|+|+-+ ++.++.||.+++.
T Consensus 493 IAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~----p~~e~~dL~~ll~ 568 (712)
T COG5000 493 IAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPA----PKLEKSDLRALLK 568 (712)
T ss_pred HHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCcchHHHHHH
Confidence 7999999999999999976544321 234567888999999999999999999999754 4567899999999
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC--------eEEEEEeecCCCCCC
Q 042553 452 DVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG--------HISVRACVKKPSAIG 523 (1131)
Q Consensus 452 ~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G--------~I~v~~~~~~~~~~~ 523 (1131)
+++..++. ....+.+..+...++ .+...|+..|+|++.||+.||...-..- .|+++.
T Consensus 569 e~~~L~e~--~~~~i~f~~e~g~ep----l~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~--------- 633 (712)
T COG5000 569 EVSFLYEI--GNDHIVFAAEFGGEP----LIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL--------- 633 (712)
T ss_pred HHHHHHhc--cCCCeEEEeecCCCc----eeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEE---------
Confidence 99988764 335667777665543 3466799999999999999999985321 122211
Q ss_pred CCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccc
Q 042553 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLG 603 (1131)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLG 603 (1131)
++....+++.|.|||.|.|.|.+.++||||.+.+. .|||||
T Consensus 634 -------------------------------------~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~--KGTGLG 674 (712)
T COG5000 634 -------------------------------------DDADGRIVVDVIDNGKGFPRENRHRALEPYVTTRE--KGTGLG 674 (712)
T ss_pred -------------------------------------ecCCCeEEEEEecCCCCCChHHhhhhccCceeccc--cccccc
Confidence 22334689999999999999999999999998766 599999
Q ss_pred hHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 604 LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 604 LsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
|+|||+|+|-|||.|.+.+.++- .|.+.++.+|.
T Consensus 675 LAiVKkIvEeHGG~leL~da~d~-~GA~i~i~fp~ 708 (712)
T COG5000 675 LAIVKKIVEEHGGRLELHNAPDF-DGAMIRIKFPL 708 (712)
T ss_pred HHHHHHHHHhcCCeEEecCCCCC-CCcEEEEEccc
Confidence 99999999999999999988643 49999888765
No 42
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.87 E-value=8.3e-21 Score=233.76 Aligned_cols=194 Identities=22% Similarity=0.309 Sum_probs=144.0
Q ss_pred HHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHHH
Q 042553 373 AFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLED 452 (1131)
Q Consensus 373 flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~~ 452 (1131)
.+..++||+++||++|.|++++. +.++.++.+...+..+..+++++...-+ ...+...
T Consensus 341 ~l~~~~he~~n~L~~i~g~l~~~--------~~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~ 398 (545)
T PRK15053 341 SLRTLRHEHLNWMSTLNGLLQMK--------EYDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGL 398 (545)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhc--------hhhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHH
Confidence 35668999999999999987752 2344567777778888888888766422 1122222
Q ss_pred HHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhcc---CCC--eEEEEEeecCCCCCCCCCC
Q 042553 453 VVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFT---SEG--HISVRACVKKPSAIGNPSL 527 (1131)
Q Consensus 453 v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT---~~G--~I~v~~~~~~~~~~~~~~~ 527 (1131)
+. .....+.++++.+.+....... .....+|+..|.|||.||++||+||. ++| .|.+.+...
T Consensus 399 l~-~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~---------- 465 (545)
T PRK15053 399 LF-GKVQRARELGLKMVIVPGSQLS--QLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDE---------- 465 (545)
T ss_pred HH-HHHHHHHHhCCceEEcCCCccc--cccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEEC----------
Confidence 22 2234577889988876533211 11246799999999999999999994 333 455544211
Q ss_pred CCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC-CCCcccchHH
Q 042553 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG-EGGTGLGLGI 606 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~-~~GtGLGLsI 606 (1131)
...+.|+|.|+|+|||++.+++||++||+.+.. .+|+||||+|
T Consensus 466 ------------------------------------~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~~~g~GlGL~i 509 (545)
T PRK15053 466 ------------------------------------GDDVVIEVADQGCGVPESLRDKIFEQGVSTRADEPGEHGIGLYL 509 (545)
T ss_pred ------------------------------------CCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCCCCCceeCHHH
Confidence 125789999999999999999999999997654 3689999999
Q ss_pred HHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 607 VQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 607 vk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
||++|+.|||+|+++|.. |.||+|++.+|..
T Consensus 510 vk~iv~~~~G~i~v~s~~--~~Gt~f~i~lP~~ 540 (545)
T PRK15053 510 IASYVTRCGGVITLEDND--PCGTLFSIFIPKV 540 (545)
T ss_pred HHHHHHHcCCEEEEEECC--CCeEEEEEEECCC
Confidence 999999999999998865 4699999999864
No 43
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.84 E-value=2.1e-19 Score=199.17 Aligned_cols=206 Identities=21% Similarity=0.359 Sum_probs=168.3
Q ss_pred HHHchHhhHHHHHHHHHHHHHHH--hhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHH
Q 042553 374 FANASHDIRAALAGITGLIELCY--VEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLE 451 (1131)
Q Consensus 374 lA~iSHELRTPLt~I~g~~ell~--~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~ 451 (1131)
+.++||||..||+++..|+=-.. -+..+.....++++.|+.-.+|+-.+|+.|-.|+|-.+++-.+ .|++|.++++
T Consensus 455 mTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~~v~ 532 (673)
T COG4192 455 MTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNSVVE 532 (673)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHHHHH
Confidence 46899999999999998764221 2233445678899999999999999999999999987776544 6899999999
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC--CeEEEEEeecCCCCCCCCCCCC
Q 042553 452 DVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE--GHISVRACVKKPSAIGNPSLSS 529 (1131)
Q Consensus 452 ~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~--G~I~v~~~~~~~~~~~~~~~~~ 529 (1131)
.+.+.+....+.+.+.+....+ .++|.||..+++|||.||+-||+..+.. -.|.+.+.
T Consensus 533 ~AweLl~~khk~rQ~~Li~ptD------~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~-------------- 592 (673)
T COG4192 533 QAWELLQTKHKRRQIKLINPTD------DLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIAL-------------- 592 (673)
T ss_pred HHHHHHHhhhhhccccccCCcc------cceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEee--------------
Confidence 9999999999888888865442 2469999999999999999999998754 24444331
Q ss_pred CccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHH
Q 042553 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQS 609 (1131)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~ 609 (1131)
..+...+++.|.|+|.|-|-+..+++|.||...+. -|.||||+||..
T Consensus 593 -------------------------------~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~--vgLGlGLSIsqS 639 (673)
T COG4192 593 -------------------------------GTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE--VGLGLGLSISQS 639 (673)
T ss_pred -------------------------------cCcccceEEEEecCCCCCchhHHHHhcCCcccccc--cccccchhHHHH
Confidence 11233589999999999999999999999987665 499999999999
Q ss_pred HHHHhCCEEEEEeecCCCccEEEEEEE
Q 042553 610 LVRLMGGDIEIVDKENGERGTCFRFNV 636 (1131)
Q Consensus 610 Lv~~~gG~I~v~s~~~gg~Gt~f~~~l 636 (1131)
|++.|.|++.+.|... ++.++.+.+
T Consensus 640 lmeqmqG~l~lAStLt--~nA~ViL~f 664 (673)
T COG4192 640 LMEQMQGRLALASTLT--KNAMVILEF 664 (673)
T ss_pred HHHHhcCcchHhhhcc--cCcEEEEEE
Confidence 9999999999988764 688776654
No 44
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.83 E-value=6.5e-20 Score=198.82 Aligned_cols=115 Identities=32% Similarity=0.471 Sum_probs=107.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+...|++.||.|..+.+|++|++++.. . ||+||+|++||+|||+++|++||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-------------~-~dlviLD~~lP~~dG~~~~~~iR 66 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-------------Q-PDLVLLDLMLPDLDGLELCRRLR 66 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-------------C-CCEEEEECCCCCCCHHHHHHHHH
Confidence 379999999999999999999999999999999999999975 4 99999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. . ...+|||+|||..+.+++..++++||||||+|||++++|.++|+.+
T Consensus 67 ~~-~--~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~ 115 (229)
T COG0745 67 AK-K--GSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRAL 115 (229)
T ss_pred hh-c--CCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHH
Confidence 65 2 3468999999999999999999999999999999999999999876
No 45
>PRK13559 hypothetical protein; Provisional
Probab=99.79 E-value=3.7e-18 Score=199.11 Aligned_cols=184 Identities=18% Similarity=0.262 Sum_probs=139.1
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~l 449 (1131)
+.+|++.++||+||||+.|.|+++++... .+...+++.+...+.+|.++++++|+.++ .+++++.++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~~----~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~ 236 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGRA----DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEEL 236 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhccC----CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHH
Confidence 34578889999999999999999986421 23455678888889999999999987654 367999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEe-CHHHHHHHHHHHHHHHhhc---cC-CCeEEEEEeecCCCCCCC
Q 042553 450 LEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKG-DRVKLKQILSNLLSNAVKF---TS-EGHISVRACVKKPSAIGN 524 (1131)
Q Consensus 450 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~g-D~~rL~QIL~NLL~NAiKf---T~-~G~I~v~~~~~~~~~~~~ 524 (1131)
+++++..+... +..+.++.++ . .+.. +...|.|||.||+.||+|| ++ .|.|.|.+...
T Consensus 237 ~~~~~~~~~~~----~~~i~~~~~~-~-----~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~------- 299 (361)
T PRK13559 237 IRAQVAPYAPR----ATRVAFEGPG-I-----RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPS------- 299 (361)
T ss_pred HHHHHHhhcCC----CceEEEECCC-e-----eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEec-------
Confidence 99999877532 4555554322 1 1222 2356999999999999999 44 47787765211
Q ss_pred CCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccch
Q 042553 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGL 604 (1131)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGL 604 (1131)
.....+.+.|.|+|.|++++ ..|+|+||
T Consensus 300 -------------------------------------~~~~~~~i~v~d~G~~~~~~---------------~~~~g~Gl 327 (361)
T PRK13559 300 -------------------------------------PEGAGFRIDWQEQGGPTPPK---------------LAKRGFGT 327 (361)
T ss_pred -------------------------------------CCCCeEEEEEECCCCCCCCC---------------CCCCCcHH
Confidence 01125789999999998765 24889999
Q ss_pred HHHHHHHHH-hCCEEEEEeecCCCccEEEEEEEec
Q 042553 605 GIVQSLVRL-MGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 605 sIvk~Lv~~-~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
.||+++++. |||+|++++.+ .|++|+|++|+
T Consensus 328 ~i~~~~v~~~~gG~i~~~~~~---~G~~~~l~~P~ 359 (361)
T PRK13559 328 VIIGAMVESQLNGQLEKTWSD---DGLLARIEIPS 359 (361)
T ss_pred HHHHHHHHHHcCCeEEEEEcC---CeEEEEEEEeC
Confidence 999999997 99999998752 59999999985
No 46
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.75 E-value=9.4e-16 Score=177.46 Aligned_cols=192 Identities=29% Similarity=0.414 Sum_probs=138.7
Q ss_pred HHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHHHH
Q 042553 374 FANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDV 453 (1131)
Q Consensus 374 lA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v 453 (1131)
+...+||.++=|+.|.|++++-. -++..+++.++ ++.-..+++.+.. ++. ..++...
T Consensus 337 LRaq~HEfmNkLhtI~GLlql~~-----yd~a~~~I~~~---~~~qq~~~~~l~~--~i~-------------~~~lAg~ 393 (537)
T COG3290 337 LRAQSHEFMNKLHTILGLLQLGE-----YDDALDYIQQE---SEEQQELIDSLSE--KIK-------------DPVLAGF 393 (537)
T ss_pred HHHhhHHHHHHHHHHHHHHhhcc-----HHHHHHHHHHH---HhhhhhhHHHHHH--hcc-------------cHHHHHH
Confidence 56689999999999999998721 12334444443 3333344444321 111 1334444
Q ss_pred HHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccC---C-CeEEEEEeecCCCCCCCCCCCC
Q 042553 454 VDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS---E-GHISVRACVKKPSAIGNPSLSS 529 (1131)
Q Consensus 454 ~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~---~-G~I~v~~~~~~~~~~~~~~~~~ 529 (1131)
+---...|+++|+.+.+++....+- ..-.-++.-+--|+.|||+||+..+- + ..|.+.+..
T Consensus 394 LlgK~~rArElgv~l~Id~~S~l~~--~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~------------- 458 (537)
T COG3290 394 LLGKISRARELGVSLIIDPNSQLPQ--LPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSD------------- 458 (537)
T ss_pred HHhHHHHHHHcCceEEEcCCCcCCC--CCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe-------------
Confidence 4445567999999999987543221 11334888999999999999999875 2 356655431
Q ss_pred CccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHH
Q 042553 530 SRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQS 609 (1131)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~ 609 (1131)
....+.|+|.|||||||++.+++||+.=|..+. .+|.|.||++||+
T Consensus 459 ---------------------------------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~-~~~rGiGL~Lvkq 504 (537)
T COG3290 459 ---------------------------------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN-TGGRGIGLYLVKQ 504 (537)
T ss_pred ---------------------------------cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC-CCCCchhHHHHHH
Confidence 223689999999999999999999998877665 5789999999999
Q ss_pred HHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 610 LVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 610 Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
+|+.+||.|+++|.. +.||+|++.+|..
T Consensus 505 ~V~~~~G~I~~~s~~--~~Gt~F~i~iP~~ 532 (537)
T COG3290 505 LVERLGGSIEVESEK--GQGTRFSIYIPKV 532 (537)
T ss_pred HHHHcCceEEEeeCC--CCceEEEEECCCC
Confidence 999999999999864 4699999988764
No 47
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.75 E-value=5.2e-18 Score=163.47 Aligned_cols=106 Identities=37% Similarity=0.620 Sum_probs=94.0
Q ss_pred eCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCC
Q 042553 485 GDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDEN 563 (1131)
Q Consensus 485 gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1131)
||+.+|++||.||++||+||+++ |.|.|.+...
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~---------------------------------------------- 34 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEED---------------------------------------------- 34 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEE----------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEe----------------------------------------------
Confidence 79999999999999999999987 7888876532
Q ss_pred CcEEEEEEEecCCCCCcchHhhhccCCeecCC---CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 564 AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 564 ~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~---~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
...+.|+|.|+|.|||++.++++|++|++.+. ..+|+||||++|+.++++|+|+|++.+.+. .||+|+|.+|+
T Consensus 35 ~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~--~gt~v~~~~p~ 110 (111)
T PF02518_consen 35 DDHLSIEISDNGVGIPPEELEKLFEPFFTSDKSETSISGHGLGLYIVKQIAERHGGELTIESSEG--GGTTVTFTLPL 110 (111)
T ss_dssp TTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSSSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETT--TEEEEEEEEEG
T ss_pred cCeEEEEEEeccccccccccccchhhcccccccccccCCCChHHHHHHHHHHHCCCEEEEEEcCC--CcEEEEEEEEC
Confidence 12689999999999999999999999999775 246899999999999999999999998864 59999999986
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.73 E-value=2.8e-16 Score=194.41 Aligned_cols=192 Identities=21% Similarity=0.294 Sum_probs=138.9
Q ss_pred HHHchHhhHHHHHHHHHHHHH----HHhhCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHH
Q 042553 374 FANASHDIRAALAGITGLIEL----CYVEAG-PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGE 448 (1131)
Q Consensus 374 lA~iSHELRTPLt~I~g~~el----l~~~~~-~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ 448 (1131)
.+.++||+++|++.+..++.+ +..... ..++..+.+..+.....++...+.+++...+ +...++++.+
T Consensus 364 ~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~~ 436 (565)
T PRK10935 364 RATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLGS 436 (565)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHHH
Confidence 356899999999888766543 322222 2244556677777777777778888776544 2346789999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCC
Q 042553 449 LLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528 (1131)
Q Consensus 449 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~ 528 (1131)
.+++++..+... .++.+.++...+.. ....+++.++.|++.||+.||+||++.|.|.+.+....
T Consensus 437 ~l~~~~~~~~~~---~~~~i~~~~~~~~~---~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~---------- 500 (565)
T PRK10935 437 ALEEMLDQLRNQ---TDAKITLDCRLPSQ---ALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNP---------- 500 (565)
T ss_pred HHHHHHHHHHHh---hCCeEEEEeeCCCC---CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC----------
Confidence 999999988754 33444443221111 11234566799999999999999999998887764321
Q ss_pred CCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHH
Q 042553 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQ 608 (1131)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk 608 (1131)
...+.|+|.|+|+|||++. ..|+||||+||+
T Consensus 501 -----------------------------------~~~~~i~V~D~G~Gi~~~~--------------~~~~glGL~i~~ 531 (565)
T PRK10935 501 -----------------------------------DGEHTVSIRDDGIGIGELK--------------EPEGHYGLNIMQ 531 (565)
T ss_pred -----------------------------------CCEEEEEEEECCcCcCCCC--------------CCCCCcCHHHHH
Confidence 1257899999999999743 248899999999
Q ss_pred HHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 609 SLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 609 ~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
++++.|||+|++.|.+ +.||+|+|.+|.+
T Consensus 532 ~iv~~~~G~i~v~s~~--~~Gt~~~i~lP~~ 560 (565)
T PRK10935 532 ERAERLGGTLTISQPP--GGGTTVSLTFPSQ 560 (565)
T ss_pred HHHHHcCCEEEEEECC--CCcEEEEEEECCC
Confidence 9999999999998875 3599999999875
No 49
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.70 E-value=9.1e-17 Score=186.15 Aligned_cols=115 Identities=30% Similarity=0.443 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHH--hCCCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLR--HLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~--~~g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
.+||||||.++.|+.++.++. .+|++ |.+|.||+||++.+++. +||+||+|+.||+|||+++++
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~-------------~pDiviTDI~MP~mdGLdLI~ 68 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQET-------------QPDIVITDINMPGMDGLDLIK 68 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhc-------------CCCEEEEecCCCCCcHHHHHH
Confidence 379999999999999999985 56886 56899999999999974 899999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.+|+. .+.+-+|+||+..+-+.+.+|++.|+.|||.||++.++|.+++.++
T Consensus 69 ~ike~----~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki 119 (475)
T COG4753 69 AIKEQ----SPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKI 119 (475)
T ss_pred HHHHh----CCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHH
Confidence 99985 4678899999999999999999999999999999999999999875
No 50
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.69 E-value=4.3e-16 Score=149.50 Aligned_cols=111 Identities=35% Similarity=0.544 Sum_probs=105.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1001 ILVADDSMMLRRVAEINLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1001 ILvvdD~~~~~~~l~~~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
||||||++..+..+...|+..|+ .|..+.++.+|++.+.+. .||+||+|+.||+++|.+++++||+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~-------------~~d~iiid~~~~~~~~~~~~~~i~~ 67 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKH-------------PPDLIIIDLELPDGDGLELLEQIRQ 67 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHS-------------TESEEEEESSSSSSBHHHHHHHHHH
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhccc-------------CceEEEEEeeecccccccccccccc
Confidence 79999999999999999999999 999999999999999874 7999999999999999999999998
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
.. +++|||++|++.+.....+++++|+++||.||++.++|.++|+
T Consensus 68 ~~----~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 68 IN----PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HT----TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred cc----ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 63 5799999999999999999999999999999999999999885
No 51
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.68 E-value=4.4e-16 Score=181.06 Aligned_cols=114 Identities=31% Similarity=0.506 Sum_probs=108.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..|..+...|+..||.|..+.|+.+|++++... .||+||+|+.||+|||++++++|+
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-------------~~~lvl~Di~mp~~~Gl~ll~~i~ 71 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-------------PFDLVLLDIRMPGMDGLELLKEIK 71 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-------------CCCEEEEecCCCCCchHHHHHHHH
Confidence 4699999999999999999999999999999999999999873 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
+. .+++|||++|++.+.+....|++.||.|||.|||++++|...|++
T Consensus 72 ~~----~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~r 118 (464)
T COG2204 72 SR----DPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVER 118 (464)
T ss_pred hh----CCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHH
Confidence 86 468999999999999999999999999999999999999998876
No 52
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.67 E-value=2.6e-16 Score=173.63 Aligned_cols=118 Identities=33% Similarity=0.499 Sum_probs=108.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
...+||+|||.+.++..+...|+..||.+..|.||++|+++.... ++|+||+|++||+|||+|+|++
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~-------------~~dlvllD~~mp~mdg~ev~~~ 79 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEE-------------PPDLVLLDVRMPEMDGAEVLNK 79 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhccc-------------CCceEEeeccCCCccHHHHHHH
Confidence 346899999999999999999999999999999999999998763 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
|+...+ .+.++|||++|+.++.++..+|+++|+++||.||+++.+|..+++
T Consensus 80 lk~~~p-~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~ 130 (360)
T COG3437 80 LKAMSP-STRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVS 130 (360)
T ss_pred HHhcCC-cccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHH
Confidence 998432 356899999999999999999999999999999999999998875
No 53
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.66 E-value=1.2e-14 Score=180.13 Aligned_cols=184 Identities=21% Similarity=0.228 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHHHHHHHHHH
Q 042553 381 IRAALAGITGLIELCYVE-AGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHP 459 (1131)
Q Consensus 381 LRTPLt~I~g~~ell~~~-~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v~~~~~~ 459 (1131)
+..+|+.+...+..+... ....++..+.+..|....+++...++++|...+.+ ..+.++.+.++++++.+..
T Consensus 373 i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~ 445 (569)
T PRK10600 373 IAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSA 445 (569)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHH
Confidence 444556665555544322 22235667788999999999999999999877643 3567899999999988875
Q ss_pred HHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCCCCccCcccchh
Q 042553 460 VAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSIS 539 (1131)
Q Consensus 460 ~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1131)
.. ++.+.++...+.. .....++..+.||+.|+++||+||++.+.|.|++...
T Consensus 446 ~~---~~~i~~~~~~~~~---~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~---------------------- 497 (569)
T PRK10600 446 RF---GFPVKLDYQLPPR---LVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN---------------------- 497 (569)
T ss_pred Hh---CCeEEEEecCCcc---cCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc----------------------
Confidence 54 3444443321111 0011245569999999999999999888887766421
Q ss_pred hhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHHHHHHhCCEEE
Q 042553 540 CLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIE 619 (1131)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~Lv~~~gG~I~ 619 (1131)
...+.|+|.|+|+|||++. ..|+|+||+|||++++.|||+|.
T Consensus 498 ------------------------~~~~~l~V~D~G~Gi~~~~--------------~~~~glGL~i~~~~~~~lgG~l~ 539 (569)
T PRK10600 498 ------------------------QNQVKLSVQDNGCGVPENA--------------ERSNHYGLIIMRDRAQSLRGDCR 539 (569)
T ss_pred ------------------------CCEEEEEEEECCCCCCccc--------------cCCCCccHHHHHHHHHHcCCEEE
Confidence 1257899999999999863 13789999999999999999999
Q ss_pred EEeecCCCccEEEEEEEecc
Q 042553 620 IVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 620 v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
+.+.+ ++||+|++++|..
T Consensus 540 i~s~~--~~Gt~v~i~lp~~ 557 (569)
T PRK10600 540 VRRRE--SGGTEVVVTFIPE 557 (569)
T ss_pred EEECC--CCCEEEEEEEecC
Confidence 98875 3599999998763
No 54
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.64 E-value=5e-15 Score=145.94 Aligned_cols=117 Identities=36% Similarity=0.540 Sum_probs=103.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHH-HHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGE-AALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~-eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
.+.+||+|||++.++..+..+|...|+.+..+.+|. +|++.++.. ..||+|++|++||+|||+++++
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~------------~~~dlii~D~~mp~~~G~~~~~ 71 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLREL------------PQPDLILLDINMPGMDGIELLR 71 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhC------------CCCCEEEEeCCCCCCCHHHHHH
Confidence 346899999999999999999999999999999996 999999863 1399999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHH-HHHHHHH
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDH-LMEAIKY 1129 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~-L~~~I~~ 1129 (1131)
++|+. ...+|+|++|++.......+++++|+++|+.||+...+ |..+++.
T Consensus 72 ~l~~~----~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~ 122 (130)
T COG0784 72 RLRAR----GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRR 122 (130)
T ss_pred HHHhC----CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHH
Confidence 99986 34678899999998887788899999999999977666 6777654
No 55
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.62 E-value=6.2e-15 Score=158.56 Aligned_cols=114 Identities=34% Similarity=0.448 Sum_probs=104.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 1000 KILVADDSMMLRRVAEINLRHLG-AT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g-~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
+|||+||++..|..++.+|+..+ ++ +..+.||.+|++.+.. .+||+||||+.||+|||++++++|
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-------------~~pdvvl~Dl~mP~~~G~e~~~~l 68 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE-------------LKPDVVLLDLSMPGMDGLEALKQL 68 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh-------------cCCCEEEEcCCCCCCChHHHHHHH
Confidence 69999999999999999998776 76 4568889999999765 379999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .++++|+++|++.+.....+++++|+++|+.|..+.++|.++|+.+
T Consensus 69 ~~~----~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v 117 (211)
T COG2197 69 RAR----GPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAV 117 (211)
T ss_pred HHH----CCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 954 4678999999999999999999999999999999999999999875
No 56
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.62 E-value=3.5e-15 Score=150.51 Aligned_cols=114 Identities=26% Similarity=0.360 Sum_probs=105.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.-|.||||+...|+.+..+|+..||.+....++++-+..... ..+-++|+|+.||+|+|.|+-++++
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~-------------~~pGclllDvrMPg~sGlelq~~L~ 71 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL-------------DRPGCLLLDVRMPGMSGLELQDRLA 71 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC-------------CCCCeEEEecCCCCCchHHHHHHHH
Confidence 458999999999999999999999999999999999988533 2588999999999999999999998
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
+. +..+|||++|+|.+-....+++++||.|||.|||+.+.|+++|++
T Consensus 72 ~~----~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~ 118 (202)
T COG4566 72 ER----GIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVER 118 (202)
T ss_pred hc----CCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHH
Confidence 75 457999999999999999999999999999999999999999875
No 57
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.60 E-value=9.6e-15 Score=150.24 Aligned_cols=113 Identities=24% Similarity=0.337 Sum_probs=103.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 1000 KILVADDSMMLRRVAEINLRHL-GAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~-g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
+||||||++...++-+.++++. ||. |-+|.++++|..++... .|||||+|+-||+.+|++++..|
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~-------------~pDLILLDiYmPd~~Gi~lL~~i 68 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEF-------------KPDLILLDIYMPDGNGIELLPEL 68 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhh-------------CCCEEEEeeccCCCccHHHHHHH
Confidence 6999999999999999999875 776 55899999999999874 68999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
|+. ..++-||++||-.+.+...+++..|+-|||.|||..+.|.++|.+
T Consensus 69 r~~----~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~ 116 (224)
T COG4565 69 RSQ----HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTR 116 (224)
T ss_pred Hhc----CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHH
Confidence 986 346779999999999999999999999999999999999999865
No 58
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.58 E-value=5.8e-14 Score=172.49 Aligned_cols=143 Identities=24% Similarity=0.396 Sum_probs=107.7
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHH---HHHHHHHHhhccC-------------C
Q 042553 444 FDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQI---LSNLLSNAVKFTS-------------E 507 (1131)
Q Consensus 444 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QI---L~NLL~NAiKfT~-------------~ 507 (1131)
+.+..+++..-..++..+...+.++.+..... .+..|+..+.++ |.||+.||++|.- .
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~------~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~ 416 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS------STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSV 416 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC------ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCC
Confidence 34566667777777777765555555443322 246799999999 6799999999962 3
Q ss_pred CeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHh---
Q 042553 508 GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRK--- 584 (1131)
Q Consensus 508 G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~--- 584 (1131)
|.|.+++... ...+.|+|.|+|.||+++.+.
T Consensus 417 G~I~l~a~~~----------------------------------------------~~~v~I~V~DdG~GId~e~i~~~a 450 (670)
T PRK10547 417 GNLILSAEHQ----------------------------------------------GGNICIEVTDDGAGLNRERILAKA 450 (670)
T ss_pred CceEEEEEEc----------------------------------------------CCEEEEEEEeCCCCCCHHHHHHHH
Confidence 5666655321 125789999999999987553
Q ss_pred ------------------hhccCCeecCC---CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 585 ------------------TVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 585 ------------------~IFe~F~q~~~---~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
.||+|||.... ...|.|+||.|||++++.|||+|++.|.. |+||+|++.+|+..
T Consensus 451 ~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~--g~Gt~f~i~LPltl 525 (670)
T PRK10547 451 ASQGLAVSENMSDEEVGMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ--GKGTTIRILLPLTL 525 (670)
T ss_pred HHcCCCccccCCHHHHHHHhhcCCcccccccccCCCCchhHHHHHHHHHHcCCEEEEEecC--CCcEEEEEEEechh
Confidence 69999776543 23699999999999999999999999865 47999999999864
No 59
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.56 E-value=2.6e-14 Score=165.11 Aligned_cols=119 Identities=31% Similarity=0.433 Sum_probs=110.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
...+||+|||+..++..+..+|...|+.+..|.++++|+..+.+. +||+||.|+.||+|||+++|++
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~-------------~~dlil~d~~mp~~dg~el~~~ 197 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL-------------PPDLVLLDANMPDMDGLELCTR 197 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC-------------CCcEEEEecCCCccCHHHHHHH
Confidence 346899999999999999999999999999999999999999873 7999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+|+... ...+|||++|+..+.+...++++.|++||++||+...+|..++++.
T Consensus 198 lr~~~~--t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~ 249 (435)
T COG3706 198 LRQLER--TRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQ 249 (435)
T ss_pred Hhcccc--cccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHH
Confidence 999865 3579999999999999999999999999999999999999888753
No 60
>PLN03029 type-a response regulator protein; Provisional
Probab=99.54 E-value=9.7e-14 Score=150.81 Aligned_cols=130 Identities=22% Similarity=0.357 Sum_probs=107.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCC-------CCCCCCCCCCccEEEEcCCCCCCC
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQ-------RDLGAPHILPYDYILMDCEMPIMN 1069 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~-------~~~~~~~~~~~DlILmDi~MP~md 1069 (1131)
...+||||||++.++..+..+|+..||.|..+.+|.+|++.+.....+. ..........||+||+|+.||+|+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3468999999999999999999999999999999999999986431100 000011223689999999999999
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
|+++++.||+... ...+|||++|+....+...+|+++|+++||.||++..+|...+.
T Consensus 87 G~e~l~~ir~~~~--~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~ 143 (222)
T PLN03029 87 GYDLLKKIKESSS--LRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKP 143 (222)
T ss_pred HHHHHHHHHhccc--cCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHH
Confidence 9999999997532 23689999999999999999999999999999999999976654
No 61
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.54 E-value=1.3e-13 Score=150.14 Aligned_cols=115 Identities=18% Similarity=0.210 Sum_probs=103.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRH-LGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~-~g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+||||||++..+..+...|+. .|+. |..+.++.+|++.+... .||+||+|+.||+++|+++++.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~-------------~pdlvllD~~mp~~~gle~~~~ 71 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF-------------KPGLILLDNYLPDGRGINLLHE 71 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc-------------CCCEEEEeCCCCCCcHHHHHHH
Confidence 5899999999999999999986 4774 67899999999999763 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+.+|||++|++...+...+++++|+++|+.||++.++|..+|+++
T Consensus 72 l~~~----~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~ 121 (225)
T PRK10046 72 LVQA----HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 (225)
T ss_pred HHhc----CCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHH
Confidence 9974 2357899999999999999999999999999999999999998764
No 62
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.53 E-value=2.6e-13 Score=162.91 Aligned_cols=117 Identities=18% Similarity=0.305 Sum_probs=104.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
...+||+|||++..+..+..+|.. .+.+..+.++.+|+..+.+ .+||+||+|+.||.|||++++++
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~-------------~~~d~vi~d~~~p~~~g~~l~~~ 219 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE-------------TNYDLVIVSANFENYDPLRLCSQ 219 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc-------------CCCCEEEecCCCCCchHhHHHHH
Confidence 346799999999999999999965 4777789999999998765 37999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
||+... .+.+|||++|++.+.+...+|+++|++||+.||++.++|...|..
T Consensus 220 i~~~~~--~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~ 270 (457)
T PRK09581 220 LRSKER--TRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRT 270 (457)
T ss_pred HHhccc--cCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHH
Confidence 997532 357999999999999999999999999999999999999988754
No 63
>PRK11173 two-component response regulator; Provisional
Probab=99.49 E-value=4.6e-13 Score=146.54 Aligned_cols=114 Identities=23% Similarity=0.362 Sum_probs=105.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||++||++..+..+...|+..|+.+..+.++.+|++.+... .||+||+|+.||+++|+++++.||
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~-------------~~dlvild~~l~~~~g~~~~~~lr 70 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN-------------DINLVIMDINLPGKNGLLLARELR 70 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC-------------CCCEEEEcCCCCCCCHHHHHHHHh
Confidence 4799999999999999999999999999999999999998763 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. ..+|||++|++........++++|+++|+.||++..+|...++++
T Consensus 71 ~~-----~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~ 117 (237)
T PRK11173 71 EQ-----ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 (237)
T ss_pred cC-----CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 63 258999999999998899999999999999999999999888754
No 64
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.49 E-value=5e-13 Score=144.51 Aligned_cols=114 Identities=27% Similarity=0.450 Sum_probs=105.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||++||++..+..+...|+..|+.+..+.++++|++.+... .||+|++|+.||+++|+++++.+|+
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~-------------~~dlvild~~l~~~~g~~l~~~lr~ 68 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEH-------------LPDIAIVDLGLPDEDGLSLIRRWRS 68 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC-------------CCCEEEEECCCCCCCHHHHHHHHHh
Confidence 699999999999999999999999999999999999988753 6999999999999999999999997
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
. .+++|||++|+..+.+....++++|+++|+.||++..+|...++.+
T Consensus 69 ~----~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~ 115 (223)
T PRK10816 69 N----DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQAL 115 (223)
T ss_pred c----CCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Confidence 4 2468999999999999999999999999999999999999988764
No 65
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.48 E-value=5.7e-13 Score=144.18 Aligned_cols=114 Identities=25% Similarity=0.367 Sum_probs=104.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||++||++..+..+...|+..|+.+..+.++.+|+..+... .||+||+|+.||+++|+++++.||
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~-------------~~dlvild~~l~~~~g~~~~~~lr 68 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR-------------KPDLIILDLGLPDGDGIEFIRDLR 68 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3799999999999999999999999999999999999987652 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. ..+|+|++|+....+...+++++|+++|+.||++.++|..+++.+
T Consensus 69 ~~-----~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~ 115 (225)
T PRK10529 69 QW-----SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 (225)
T ss_pred cC-----CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 63 358999999999999999999999999999999999999988764
No 66
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.48 E-value=7.5e-13 Score=143.56 Aligned_cols=114 Identities=30% Similarity=0.457 Sum_probs=105.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||++||++..+..+...|+..|+.+..+.++.+|++.+... .||+||+|+.||+++|+++++.+|+
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~-------------~~dlvild~~~~~~~g~~~~~~lr~ 68 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG-------------DYDLIILDIMLPDVNGWDIVRMLRS 68 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC-------------CCCEEEEECCCCCCCHHHHHHHHHh
Confidence 699999999999999999999999999999999999987653 6999999999999999999999997
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
. .+.+|||++|+....+...+++++|+++|+.||++.++|..+++.+
T Consensus 69 ~----~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~ 115 (227)
T PRK09836 69 A----NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTL 115 (227)
T ss_pred c----CCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Confidence 4 2468999999999999999999999999999999999999988764
No 67
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.46 E-value=1.1e-12 Score=143.40 Aligned_cols=115 Identities=31% Similarity=0.433 Sum_probs=106.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+|||+||++..+..+...|+..|+.+..+.++.++++.+... .||+||+|+.||.++|+++++.||
T Consensus 6 ~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~-------------~~dlvild~~l~~~~g~~~~~~lr 72 (239)
T PRK09468 6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE-------------SFHLMVLDLMLPGEDGLSICRRLR 72 (239)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999999988753 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .+.+|||++|+....+....++++|+++|+.||++.++|..+++.+
T Consensus 73 ~~----~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~ 120 (239)
T PRK09468 73 SQ----NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAV 120 (239)
T ss_pred hc----CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 74 2468999999999999999999999999999999999999988764
No 68
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.46 E-value=1.2e-12 Score=140.80 Aligned_cols=114 Identities=26% Similarity=0.432 Sum_probs=104.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||+|||++..+..+...|+..|+.+..+.++.++++.+... .||+||+|+.||+++|+++++.+|+
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-------------~~d~illd~~~~~~~g~~~~~~l~~ 68 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG-------------HYSLVVLDLGLPDEDGLHLLRRWRQ 68 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC-------------CCCEEEEECCCCCCCHHHHHHHHHh
Confidence 699999999999999999999999999999999999988753 6899999999999999999999997
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
. .+.+|||++|+....+....++++|+++|+.||++.++|..+++.+
T Consensus 69 ~----~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 115 (222)
T PRK10643 69 K----KYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRAL 115 (222)
T ss_pred c----CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Confidence 4 2468999999999999999999999999999999999999988764
No 69
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.45 E-value=1.3e-12 Score=140.97 Aligned_cols=114 Identities=26% Similarity=0.366 Sum_probs=104.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||+|||++..+..+...|+..|+.|..+.++.+|++.+... .||+|++|+.||.++|+++++.+|
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-------------~~dlvild~~l~~~~g~~~~~~lr 69 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQ-------------HVDLILLDINLPGEDGLMLTRELR 69 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999988753 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. +.+|+|++|+..+.....+++++|+++|+.||++..+|..+++.+
T Consensus 70 ~~-----~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~ 116 (221)
T PRK10766 70 SR-----STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNL 116 (221)
T ss_pred hC-----CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHH
Confidence 63 258999999999999999999999999999999999999888653
No 70
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.44 E-value=3e-13 Score=144.08 Aligned_cols=112 Identities=30% Similarity=0.493 Sum_probs=101.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+|+||||+......+..+|.+.|+.+..|+...+|++.+... .|||||+|+.||+|+|+|+++++|.
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~-------------kpDLifldI~mp~~ngiefaeQvr~ 68 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF-------------KPDLIFLDIVMPYMNGIEFAEQVRD 68 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc-------------CCCEEEEEeecCCccHHHHHHHHHH
Confidence 699999999999999999999999999999999999999874 7999999999999999999999998
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.+ +.+|||++|+++. .....++...+|||.||++++.|..+|.++
T Consensus 69 i~----~~v~iifIssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~ 113 (361)
T COG3947 69 IE----SAVPIIFISSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRR 113 (361)
T ss_pred hh----ccCcEEEEecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHH
Confidence 75 4799999999864 444666667799999999999999998764
No 71
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.44 E-value=1.7e-12 Score=140.98 Aligned_cols=117 Identities=26% Similarity=0.377 Sum_probs=106.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
++||++||++..+..+...|+..|+.+..+.++++|++.+... .||+||+|+.||+++|+++++.||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~-------------~~dlvild~~l~~~~g~~~~~~l~ 69 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP-------------WPDLILLDWMLPGGSGIQFIKHLK 69 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999988652 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+.. ..+.+|||++|+..+.....+++++|+++|+.||++.++|..+|+.+
T Consensus 70 ~~~--~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~ 119 (229)
T PRK10161 70 RES--MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 (229)
T ss_pred hcc--ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 742 12468999999999999999999999999999999999999988764
No 72
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.44 E-value=1.9e-12 Score=139.49 Aligned_cols=117 Identities=32% Similarity=0.500 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+|||+||++..+..+...|+..|+.+..+.++.+++..+... .||+||+|+.||+++|+++++.||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-------------~~d~vi~d~~~~~~~g~~~~~~l~ 69 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINER-------------GPDLILLDWMLPGTSGIELCRRLR 69 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhc-------------CCCEEEEECCCCCCcHHHHHHHHH
Confidence 4799999999999999999999999999999999999988753 699999999999999999999998
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+... .+.+|||++|+........+++++|+++|+.||++.++|..+++.+
T Consensus 70 ~~~~--~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~ 119 (226)
T TIGR02154 70 RRPE--TRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAV 119 (226)
T ss_pred cccc--CCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHH
Confidence 7421 2468999999999988999999999999999999999999988764
No 73
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.44 E-value=2.1e-12 Score=138.80 Aligned_cols=114 Identities=26% Similarity=0.420 Sum_probs=104.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+|||+||++..+..+...|+..|+.+..+.++.+++..+... .||+||+|+.||+++|+++++.||+
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-------------~~dlvild~~l~~~~g~~~~~~i~~ 68 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA-------------PYDAVILDLTLPGMDGRDILREWRE 68 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC-------------CCCEEEEECCCCCCCHHHHHHHHHh
Confidence 699999999999999999999999999999999999988652 6999999999999999999999997
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
. .+.+|||++|+....+...+++++|+++|+.||++.++|..+++.+
T Consensus 69 ~----~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~ 115 (219)
T PRK10336 69 K----GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEAL 115 (219)
T ss_pred c----CCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHH
Confidence 4 3468999999999999989999999999999999999999888764
No 74
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.44 E-value=2.2e-12 Score=139.77 Aligned_cols=115 Identities=25% Similarity=0.327 Sum_probs=104.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC--CCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI--MNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~--mdG~e~~r~ 1076 (1131)
++|||+||++..+..+...|+..|+.+..+.++.+++..+... .||+|++|+.||+ ++|+++++.
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-------------~~dlvild~~l~~~~~~g~~~~~~ 67 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQR-------------LPDLAIIDIGLGEEIDGGFMLCQD 67 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhC-------------CCCEEEEECCCCCCCCCHHHHHHH
Confidence 3699999999999999999999999999999999999988763 6999999999998 589999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+.+|||++|+....+....++++|+++|+.||++.++|..+++.+
T Consensus 68 i~~~----~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~ 117 (227)
T TIGR03787 68 LRSL----SATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITAL 117 (227)
T ss_pred HHhc----CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 9974 2468999999999999999999999999999999999999988764
No 75
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.43 E-value=1.8e-12 Score=140.66 Aligned_cols=112 Identities=33% Similarity=0.470 Sum_probs=102.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. .||+||+|+.||+++|+++++.||+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--------------~~d~vl~d~~~~~~~g~~~~~~l~~ 68 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD--------------SIDLLLLDVMMPKKNGIDTLKELRQ 68 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc--------------CCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 79999999999999999999999999999999999998753 5999999999999999999999997
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.. .+|||++|+........+++++|+++|+.||++.++|..+++.+
T Consensus 69 ~~-----~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 114 (232)
T PRK10955 69 TH-----QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAI 114 (232)
T ss_pred cC-----CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHH
Confidence 42 28999999998888889999999999999999999999988764
No 76
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.43 E-value=1.9e-12 Score=142.13 Aligned_cols=113 Identities=19% Similarity=0.335 Sum_probs=102.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||+|||++..+..+...|+..|+.+..+.++.++++.+... .||+||+|+.||.++|+++++.||+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-------------~~dlvi~d~~l~~~~g~~l~~~i~~ 69 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASE-------------TVDVVVVDLNLGREDGLEIVRSLAT 69 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC-------------CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 799999999999999999999999999999999999988753 6999999999999999999999986
Q ss_pred hhccCCCCccEEEEcccC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHI-SGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~-~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
. ..+|||++|+.. ......+++++|+++|+.||++.++|..+++.+
T Consensus 70 ~-----~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~ 116 (241)
T PRK13856 70 K-----SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVA 116 (241)
T ss_pred c-----CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHH
Confidence 3 258999999854 566778999999999999999999999988754
No 77
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.43 E-value=2.2e-12 Score=141.38 Aligned_cols=113 Identities=20% Similarity=0.220 Sum_probs=103.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||++||++..+..+...|+..|+.+..+.++.+|++.+... .||+|++|+.||+++|+++++.||+
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~-------------~~dlvild~~l~~~~g~~~~~~ir~ 69 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILRE-------------QPDLVLLDIMLPGKDGMTICRDLRP 69 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhC-------------CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 699999999999999999999999999999999999998763 6999999999999999999999997
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
. ..+|+|++|+.........++++|+++|+.||++..+|..+++.+
T Consensus 70 ~-----~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~ 115 (240)
T PRK10701 70 K-----WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLH 115 (240)
T ss_pred c-----CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 3 247999999998888888999999999999999999999988753
No 78
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.43 E-value=2e-12 Score=142.25 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=101.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHh-CCCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRH-LGATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~-~g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+||||||++..+..+..+|.. .|+.+ ..+.++.+|++.+... ...||+||+|+.||+|+|+++++.
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~DlvilD~~~p~~~G~eli~~ 70 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNS-----------DTPIDLILLDIYMQQENGLDLLPV 70 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhc-----------CCCCCEEEEecCCCCCCcHHHHHH
Confidence 3799999999999999999986 47764 5789999999988631 126999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
||+. .+.+|||++|++...+...+++++|+++|+.||++.++|..+|+.
T Consensus 71 l~~~----~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~ 119 (239)
T PRK10430 71 LHEA----GCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTG 119 (239)
T ss_pred HHhh----CCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 9975 346899999999999999999999999999999999999998864
No 79
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.41 E-value=3e-12 Score=138.49 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=103.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC---CCHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGA-T-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI---MNGYE 1072 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~-~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~---mdG~e 1072 (1131)
+.+|||+||++..+..+..+|+..++ . +..+.++.++++.+... .||+||+|+.||+ ++|++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~DlvllD~~l~~~~~~~g~~ 69 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKL-------------DAHVLITDLSMPGDKYGDGIT 69 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhC-------------CCCEEEEeCcCCCCCCCCHHH
Confidence 35899999999999999999987664 3 67899999999988753 6999999999999 59999
Q ss_pred HHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1073 ATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1073 ~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
++++||+. .+.+|||++|++........++++|+++|+.||.+.++|..+|+.+
T Consensus 70 ~~~~l~~~----~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v 123 (216)
T PRK10840 70 LIKYIKRH----FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAAL 123 (216)
T ss_pred HHHHHHHH----CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHH
Confidence 99999874 3568999999999999999999999999999999999999999865
No 80
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.41 E-value=3.4e-12 Score=142.27 Aligned_cols=117 Identities=25% Similarity=0.354 Sum_probs=102.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHL-GATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~-g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+|||+||++..+..+...|... ++.+ ..+.+|.+|++.+... .||+||+|+.||+|||+++++.
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~-------------~~DlvllD~~mp~~dG~~~l~~ 69 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQ-------------QPDVVVLDIIMPHLDGIGVLEK 69 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHHHH
Confidence 57999999999999999999864 5554 4799999999998763 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+... ...+|||++|+........+++++|+++|+.||++.++|..+|+.+
T Consensus 70 i~~~~~--~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~ 121 (262)
T TIGR02875 70 LNEIEL--SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQL 121 (262)
T ss_pred HHhhcc--ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 997532 2247999999999999999999999999999999999999998764
No 81
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.40 E-value=4.6e-12 Score=136.61 Aligned_cols=113 Identities=25% Similarity=0.431 Sum_probs=104.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+... .||+|++|+.||+++|+++++.+|+
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~-------------~~dlvi~d~~~~~~~g~~~~~~l~~ 68 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD-------------DYALIILDIMLPGMDGWQILQTLRT 68 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-------------CCCEEEEECCCCCCCHHHHHHHHHc
Confidence 699999999999999999999999999999999999988653 6999999999999999999999986
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
. ..+|||++|+....+...+++++|+++|+.||++.++|..+++.+
T Consensus 69 ~-----~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~ 114 (223)
T PRK11517 69 A-----KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQ 114 (223)
T ss_pred C-----CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 3 258999999999999999999999999999999999999988763
No 82
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.40 E-value=1e-12 Score=156.23 Aligned_cols=111 Identities=19% Similarity=0.392 Sum_probs=86.0
Q ss_pred EeCHHHHHHHHHHHHHHHhhccCCC----eEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhh
Q 042553 484 KGDRVKLKQILSNLLSNAVKFTSEG----HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQ 559 (1131)
Q Consensus 484 ~gD~~rL~QIL~NLL~NAiKfT~~G----~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1131)
.++...|.|++.|||+||+||++.+ .|.|.+....
T Consensus 31 ~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~----------------------------------------- 69 (535)
T PRK04184 31 DNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVD----------------------------------------- 69 (535)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEcc-----------------------------------------
Confidence 3566789999999999999999864 3555442110
Q ss_pred ccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC------CCCCcccchHHHHHHHHHhCCE-EEEEeecCCCccE-E
Q 042553 560 RDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE------GEGGTGLGLGIVQSLVRLMGGD-IEIVDKENGERGT-C 631 (1131)
Q Consensus 560 ~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~------~~~GtGLGLsIvk~Lv~~~gG~-I~v~s~~~gg~Gt-~ 631 (1131)
.+...+.|.|.|+|+||++++++++|++|++.+. ..||+||||++|+.++++|+|. |+|.|..++ |+ .
T Consensus 70 --~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~--g~~~ 145 (535)
T PRK04184 70 --EGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGG--SKKA 145 (535)
T ss_pred --CCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCC--CceE
Confidence 0122578999999999999999999999876532 3468999999999999999997 999988653 55 6
Q ss_pred EEEEEecc
Q 042553 632 FRFNVFLA 639 (1131)
Q Consensus 632 f~~~l~l~ 639 (1131)
|+|.+++.
T Consensus 146 ~~~~l~id 153 (535)
T PRK04184 146 YYFELKID 153 (535)
T ss_pred EEEEEEec
Confidence 77777654
No 83
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.40 E-value=2.6e-12 Score=124.45 Aligned_cols=112 Identities=25% Similarity=0.350 Sum_probs=105.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
..|||||+..+.+.+...+++.||.|.+|.+.+||+..++.. +|...++|+.|-+.+|+++++.||+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~-------------~PayAvvDlkL~~gsGL~~i~~lr~ 77 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTA-------------PPAYAVVDLKLGDGSGLAVIEALRE 77 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcC-------------CCceEEEEeeecCCCchHHHHHHHh
Confidence 699999999999999999999999999999999999999874 7999999999999999999999998
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
. ..+..||+||++++-.....+++.|+++||.||-+.+++..++.
T Consensus 78 ~----~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~ 122 (182)
T COG4567 78 R----RADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALL 122 (182)
T ss_pred c----CCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHh
Confidence 6 34788999999999999999999999999999999999998875
No 84
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.40 E-value=5.6e-12 Score=136.18 Aligned_cols=115 Identities=26% Similarity=0.408 Sum_probs=104.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+|||+||++..+..+...|...|+.+..+.++.++++.+... .||+||+|+.||+++|+++++.||
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-------------~~dlvl~d~~~~~~~g~~~~~~l~ 70 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ-------------PPDLVILDVGLPDISGFELCRQLL 70 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999988652 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .+.+|||++|+.........++++|+++|+.||++.++|..+++.+
T Consensus 71 ~~----~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~ 118 (228)
T PRK11083 71 AF----HPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTI 118 (228)
T ss_pred hh----CCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHH
Confidence 75 2468999999998888888999999999999999999999988764
No 85
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.39 E-value=6e-12 Score=134.97 Aligned_cols=113 Identities=29% Similarity=0.458 Sum_probs=103.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhh
Q 042553 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREE 1080 (1131)
Q Consensus 1001 ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~ 1080 (1131)
||++||++..+..+...|...|+.+..+.++.+|++.+... .||+|++|+.||+++|+++++.+|+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-------------~~dlvl~d~~~~~~~g~~~~~~l~~~ 67 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKD-------------DYDLIILDVMLPGMDGWQILQTLRRS 67 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHHHHHcc
Confidence 58999999999999999999999999999999999988753 69999999999999999999999964
Q ss_pred hccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1081 EKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1081 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.+++|||++|+....+...+++++|+++|+.||++.++|..+++.+
T Consensus 68 ----~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~ 113 (218)
T TIGR01387 68 ----GKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTL 113 (218)
T ss_pred ----CCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999988764
No 86
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.36 E-value=1.1e-11 Score=131.71 Aligned_cols=114 Identities=19% Similarity=0.233 Sum_probs=104.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
+||++||++..+..+...|+..|+.+. .+.++.++++.+... .||+|++|+.||+++|+++++.+|
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~-------------~~dlvi~d~~~~~~~g~~~~~~l~ 68 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL-------------KPDIVIIDVDIPGVNGIQVLETLR 68 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHcc-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 699999999999999999999999987 699999999988753 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .+..|||++|+.........++++|+++|+.||++.++|..+++.+
T Consensus 69 ~~----~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~ 116 (204)
T PRK09958 69 KR----QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 (204)
T ss_pred hh----CCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHH
Confidence 74 2457899999999889999999999999999999999999998764
No 87
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.36 E-value=1.3e-11 Score=134.59 Aligned_cols=115 Identities=34% Similarity=0.524 Sum_probs=104.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||++||++..+..+...|+..|+.+..+.++.+++..+... .||+||+|+.||+++|+++++.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~-------------~~d~illd~~~~~~~g~~~~~~l 72 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKE-------------QPDLVILDVMMPKLDGYGVCQEI 72 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 35799999999999999999999999999999999999988653 69999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. +++|||++|++...+....++++|+++|+.||++.++|..+++.+
T Consensus 73 ~~~-----~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~ 120 (240)
T CHL00148 73 RKE-----SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSV 120 (240)
T ss_pred Hhc-----CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 863 368999999999988889999999999999999999999988754
No 88
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.35 E-value=1.1e-11 Score=117.05 Aligned_cols=106 Identities=42% Similarity=0.711 Sum_probs=89.3
Q ss_pred eCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCC
Q 042553 485 GDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDEN 563 (1131)
Q Consensus 485 gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1131)
+|+..|.+++.|++.||+++... +.|.|.++..
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~---------------------------------------------- 34 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERD---------------------------------------------- 34 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc----------------------------------------------
Confidence 47889999999999999999987 6777766432
Q ss_pred CcEEEEEEEecCCCCCcchHhhhccCCeecCC---CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 564 AMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 564 ~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~---~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
...+.+.|.|+|.|++++..+++|++|++.+. ..++.|+||++|+.+++.|+|++.+.+.+ +.|++|+|.+|+
T Consensus 35 ~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~--~~g~~~~~~~~~ 110 (111)
T smart00387 35 GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGRSRKIGGTGLGLSIVKKLVELHGGEISVESEP--GGGTTFTITLPL 110 (111)
T ss_pred CCEEEEEEEeCCCCCCHHHHHHHhcCeEECCCCCCCCCcccccHHHHHHHHHHcCCEEEEEecC--CCcEEEEEEeeC
Confidence 12578999999999999999999999987652 24689999999999999999999997654 359999998876
No 89
>PRK14084 two-component response regulator; Provisional
Probab=99.35 E-value=1.5e-11 Score=135.62 Aligned_cols=113 Identities=26% Similarity=0.316 Sum_probs=97.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCC-C-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLG-A-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g-~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+|||+||++..+..+..+|+..+ + .+..+.++++|+..+.+. .||+||+|+.||+++|+++++.
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~-------------~~dlv~lDi~m~~~~G~~~~~~ 67 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN-------------QYDIIFLDINLMDESGIELAAK 67 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHHHH
Confidence 369999999999999999998865 4 577899999999988753 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+..+||++|++. +...+++++|+++||.||++.++|.++++++
T Consensus 68 i~~~----~~~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~ 115 (246)
T PRK14084 68 IQKM----KEPPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKV 115 (246)
T ss_pred HHhc----CCCCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHH
Confidence 9975 2356899999864 3566899999999999999999999988764
No 90
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.34 E-value=1.4e-11 Score=149.19 Aligned_cols=115 Identities=29% Similarity=0.388 Sum_probs=106.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..|+.+..+.++.+|+..+... .||+||+|+.||++||+++++.||
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~-------------~~DlvllD~~lp~~dgl~~l~~ir 70 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASK-------------TPDVLLSDIRMPGMDGLALLKQIK 70 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC-------------CCCEEEECCCCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999998763 699999999999999999999998
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .+.+|+|++|++...+....++++|+++|+.||++.++|...++.+
T Consensus 71 ~~----~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 118 (469)
T PRK10923 71 QR----HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 (469)
T ss_pred hh----CCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHH
Confidence 74 3468999999999999999999999999999999999999888653
No 91
>PRK15115 response regulator GlrR; Provisional
Probab=99.34 E-value=1.1e-11 Score=149.22 Aligned_cols=116 Identities=30% Similarity=0.413 Sum_probs=106.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+...|+..|+.|..+.++.+|++.+... .||+||+|+.||+|+|+++++.+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~-------------~~dlvilD~~lp~~~g~~ll~~l 71 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE-------------KVDLVISDLRMDEMDGMQLFAEI 71 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC-------------CCCEEEEcCCCCCCCHHHHHHHH
Confidence 36899999999999999999999999999999999999988753 69999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .+.+|||++|+....+...+++++|+++|+.||++.++|..+|+.+
T Consensus 72 ~~~----~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~ 120 (444)
T PRK15115 72 QKV----QPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDA 120 (444)
T ss_pred Hhc----CCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHH
Confidence 864 3468999999999989999999999999999999999999988753
No 92
>PRK09483 response regulator; Provisional
Probab=99.33 E-value=2e-11 Score=131.11 Aligned_cols=115 Identities=31% Similarity=0.418 Sum_probs=103.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHL-GATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~-g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+|||+||++..+..+..+|+.. |+.+. .+.++.++++.+... +||+||+|+.||+++|+++++.
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~dlvi~d~~~~~~~g~~~~~~ 68 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTN-------------AVDVVLMDMNMPGIGGLEATRK 68 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHHHH
Confidence 37999999999999999999874 78875 789999999988763 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+.+|||++|.+........++..|+++|+.||++.++|..+++.+
T Consensus 69 l~~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~ 118 (217)
T PRK09483 69 ILRY----TPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSV 118 (217)
T ss_pred HHHH----CCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 9874 3468999999999998889999999999999999999999998865
No 93
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.32 E-value=2.2e-11 Score=147.07 Aligned_cols=116 Identities=28% Similarity=0.390 Sum_probs=106.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+...|...|+.+..+.++.+|++.+... .||+||+|+.||+++|+++++.+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-------------~~dlillD~~~p~~~g~~ll~~i 70 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI-------------HPDVVLMDIRMPEMDGIKALKEM 70 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 35799999999999999999999999999999999999998763 69999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .+.+|||++|+....+....++++|+++|+.||++.++|...++.+
T Consensus 71 ~~~----~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~ 119 (457)
T PRK11361 71 RSH----ETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRA 119 (457)
T ss_pred Hhc----CCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhh
Confidence 874 3468999999999999999999999999999999999999888653
No 94
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.32 E-value=3.7e-11 Score=128.06 Aligned_cols=115 Identities=18% Similarity=0.383 Sum_probs=102.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHL-GATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~-g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+|||+||++..+..+...|+.. ++.+. .+.++.++++.+... +||+|++|+.||+++|+++++.
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~dlvild~~l~~~~g~~~~~~ 70 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTR-------------PVDLIIMDIDLPGTDGFTFLKR 70 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHHHH
Confidence 57999999999999999999876 57765 689999999988653 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+|.. .+.+|||++|++...+...+++++|+++|+.||++.++|..+|+.+
T Consensus 71 l~~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 120 (210)
T PRK09935 71 IKQI----QSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMI 120 (210)
T ss_pred HHHh----CCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 9964 3468999999998888889999999999999999999999998764
No 95
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.31 E-value=2e-11 Score=141.46 Aligned_cols=113 Identities=29% Similarity=0.387 Sum_probs=97.0
Q ss_pred eEEEEeCCHHHHHHHHHHH-HhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 1000 KILVADDSMMLRRVAEINL-RHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L-~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
+||||||++..+..+..+| +..|+.+. .+.++++|++.+.+. .||+|++|+.||+|+|++++++|
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~-------------~pDlVllD~~mp~~~G~e~l~~l 68 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQ-------------PPDVILMDLEMPRMDGVEATRRI 68 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhcc-------------CCCEEEEcCCCCCCCHHHHHHHH
Confidence 7999999999999999999 46688876 789999999998763 69999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCC--HHHHHHHHHcCCCEEEECCC---------CHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHIS--GEEADKTIEAGMDVHLGKPL---------NRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KP~---------~~~~L~~~I~~l 1130 (1131)
|+. ..+|||++|+... .+...+++++|+++|+.||+ ..++|...|+.+
T Consensus 69 ~~~-----~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~ 127 (337)
T PRK12555 69 MAE-----RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQI 127 (337)
T ss_pred HHH-----CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHH
Confidence 873 2489999998754 45677899999999999999 566777777653
No 96
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.31 E-value=1.8e-11 Score=147.19 Aligned_cols=110 Identities=22% Similarity=0.301 Sum_probs=100.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-----CCHHHHHH
Q 042553 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-----MNGYEATR 1075 (1131)
Q Consensus 1001 ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-----mdG~e~~r 1075 (1131)
||||||++..+..+...| .||.|..+.++.+|++.+... .||+||+|+.||+ ++|+++++
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~-------------~~dlvllD~~mp~~~~~~~~g~~~l~ 65 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH-------------EPAVVTLDLGLPPDADGASEGLAALQ 65 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC-------------CCCEEEEeCCCCCCcCCCCCHHHHHH
Confidence 689999999999998888 799999999999999999763 6999999999996 99999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
.|++. .+++|||++|++.+.+...+++++|+++||.||++.++|..+|+.
T Consensus 66 ~i~~~----~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~ 115 (445)
T TIGR02915 66 QILAI----APDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDR 115 (445)
T ss_pred HHHhh----CCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhh
Confidence 99875 357899999999999999999999999999999999999988865
No 97
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.30 E-value=1.6e-11 Score=147.40 Aligned_cols=115 Identities=30% Similarity=0.414 Sum_probs=105.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+...|+..|+.+..+.++.+|+..+... .||+||+|+.||+++|+++++.|
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-------------~~DlvilD~~m~~~~G~~~~~~i 71 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ-------------VFDLVLCDVRMAEMDGIATLKEI 71 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 36899999999999999999999999999999999999988753 69999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
|+. .+.+|||++|++...+...+++++|+++|+.||++.++|..+++.
T Consensus 72 r~~----~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~ 119 (441)
T PRK10365 72 KAL----NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 (441)
T ss_pred Hhh----CCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHH
Confidence 975 356899999999999999999999999999999999999988865
No 98
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.29 E-value=4.2e-11 Score=126.52 Aligned_cols=111 Identities=22% Similarity=0.282 Sum_probs=99.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 1000 KILVADDSMMLRRVAEINLRHL-GAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~-g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
+||||||++..+..+...|+.. ++. +..+.++.++++.+... .||+||+|+.||+++|+++++.+
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~dlvi~d~~~~~~~g~~~~~~l 69 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR-------------GVQVCICDISMPDISGLELLSQL 69 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 7999999999999999999754 565 56899999999998752 69999999999999999999998
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .+|||++|.....+....++++|+++|+.||++.++|..+|+.+
T Consensus 70 ~~-------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~ 115 (196)
T PRK10360 70 PK-------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTV 115 (196)
T ss_pred cc-------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 63 47899999999999999999999999999999999999999864
No 99
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.29 E-value=2.7e-11 Score=146.44 Aligned_cols=113 Identities=26% Similarity=0.389 Sum_probs=104.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhh
Q 042553 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREE 1080 (1131)
Q Consensus 1001 ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~ 1080 (1131)
||||||++..+..+...|+..|+.|..+.++.+|+..+... .||+||+|+.||+++|+++++.||+.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-------------~~DlVllD~~~p~~~g~~ll~~l~~~ 67 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG-------------QPDLLITDVRMPGEDGLDLLPQIKKR 67 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC-------------CCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 68999999999999999999999999999999999988753 69999999999999999999999974
Q ss_pred hccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1081 EKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1081 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.+.+|||++|++.......+++++|+++|+.||++.++|..+++.+
T Consensus 68 ----~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 113 (463)
T TIGR01818 68 ----HPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERA 113 (463)
T ss_pred ----CCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999988753
No 100
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.28 E-value=8e-11 Score=128.47 Aligned_cols=114 Identities=27% Similarity=0.391 Sum_probs=103.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||++||++..+..+...|...|+.+..+.++.+|+..+... .||+||+|+.||+++|+++++.||
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-------------~~dlvl~d~~~~~~~g~~~~~~l~ 77 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQT-------------PPDLILLDLMLPGTDGLTLCREIR 77 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3799999999999999999999999999999999999988753 699999999999999999999998
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.. ..+|+|+++++........++++|+++|+.||++.++|..+|+.+
T Consensus 78 ~~-----~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~ 124 (240)
T PRK10710 78 RF-----SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 (240)
T ss_pred hc-----CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 53 258999999998888888999999999999999999999888653
No 101
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.28 E-value=4.4e-11 Score=131.06 Aligned_cols=112 Identities=27% Similarity=0.304 Sum_probs=95.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGA-T-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~-~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+|||+||++..+..+..+|+..|. . +..+.++.+|++.+... .||+||+|+.||++||+++++.
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~dlv~lDi~~~~~~G~~~~~~ 68 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL-------------KPDVVFLDIQMPRISGLELVGM 68 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHHHH
Confidence 4799999999999999999998873 3 45789999999988753 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
++.. ...+||++|++. +...++++.|+.+||.||++.++|..++.++
T Consensus 69 l~~~-----~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~ 115 (238)
T PRK11697 69 LDPE-----HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARL 115 (238)
T ss_pred hccc-----CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHH
Confidence 8642 234688888864 4667899999999999999999999888764
No 102
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.27 E-value=3.9e-11 Score=129.59 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=92.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHH-HH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT-RK 1076 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~-r~ 1076 (1131)
..++++|||+|+.+..++.+|+..--.+..+.++.+|++.+. +||+||+|+.||+++|++++ +.
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~---------------~~DvvllDi~~p~~~G~~~~~~~ 74 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS---------------SGSIILLDMMEADKKLIHYWQDT 74 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC---------------CCCEEEEECCCCCccHHHHHHHH
Confidence 357999999999999999999843334567889999988642 48999999999999999997 56
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHH--cCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIE--AGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~--aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+.++||++|+.... ...++. +|+++|+.|+.+.++|.++|+.+
T Consensus 75 i~~~----~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v 124 (216)
T PRK10100 75 LSRK----NNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGV 124 (216)
T ss_pred HHHh----CCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHH
Confidence 7764 356899999998653 334555 59999999999999999999865
No 103
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.26 E-value=1.1e-10 Score=125.43 Aligned_cols=114 Identities=29% Similarity=0.431 Sum_probs=103.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||++||++..+..+...|+..|+.+..+.++.++++.+... .||+|++|+.||+++|+++++.+|+
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-------------~~d~vild~~~~~~~~~~~~~~i~~ 68 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSE-------------MYALAVLDINMPGMDGLEVLQRLRK 68 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC-------------CCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 699999999999999999999999999999999999887652 6999999999999999999999987
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
. .+++|+|++|.....+...+++++|+++|+.||++.++|...++.+
T Consensus 69 ~----~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~ 115 (221)
T PRK15479 69 R----GQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRAL 115 (221)
T ss_pred c----CCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Confidence 5 2468999999999888889999999999999999999999888753
No 104
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.26 E-value=3.3e-11 Score=145.59 Aligned_cols=105 Identities=23% Similarity=0.335 Sum_probs=76.0
Q ss_pred eCHHHHHHHHHHHHHHHhhccCCCe----EEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhc
Q 042553 485 GDRVKLKQILSNLLSNAVKFTSEGH----ISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQR 560 (1131)
Q Consensus 485 gD~~rL~QIL~NLL~NAiKfT~~G~----I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1131)
.|...|.++|.|||+||+||++.+. |.|.+..
T Consensus 42 ~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~-------------------------------------------- 77 (795)
T PRK14868 42 SGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE-------------------------------------------- 77 (795)
T ss_pred CCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE--------------------------------------------
Confidence 4688899999999999999998753 5554421
Q ss_pred cCCCcEEEEEEEecCCCCCcchHhhhccCCeecC------CCC--CCcccchHHHHHHHHHhCCEEEEEeecCC-CccEE
Q 042553 561 DENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVK------EGE--GGTGLGLGIVQSLVRLMGGDIEIVDKENG-ERGTC 631 (1131)
Q Consensus 561 ~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~------~~~--~GtGLGLsIvk~Lv~~~gG~I~v~s~~~g-g~Gt~ 631 (1131)
....+.|.|.|+|+||++++++++|++|++.. ... .|.||||+++...+ .+||.|+|.|+..+ +.|+.
T Consensus 78 --~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sql-t~GgpI~I~S~~~~~~~g~~ 154 (795)
T PRK14868 78 --VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQL-TSGKPAKITSRTQGSEEAQY 154 (795)
T ss_pred --CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHH-cCCCcEEEEeCCCCCCceeE
Confidence 11257899999999999999999999987543 223 35556666665555 37888999998653 23454
Q ss_pred EEEEE
Q 042553 632 FRFNV 636 (1131)
Q Consensus 632 f~~~l 636 (1131)
|.+.+
T Consensus 155 ~~L~I 159 (795)
T PRK14868 155 FELII 159 (795)
T ss_pred EEEEE
Confidence 55555
No 105
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.22 E-value=1.4e-10 Score=135.35 Aligned_cols=103 Identities=27% Similarity=0.388 Sum_probs=90.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHL-GATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~-g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+||||||++.++..+..+|... |+.+. .+.++++|++.+... .||+|++|+.||+|||++++++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~-------------~~DlVllD~~mp~~dgle~l~~ 70 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKL-------------NPDVITLDVEMPVMDGLDALEK 70 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhh-------------CCCEEEEeCCCCCCChHHHHHH
Confidence 58999999999999999999876 78877 899999999988753 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccC--CHHHHHHHHHcCCCEEEECCCC
Q 042553 1077 IREEEKRNQVHIPIIALTAHI--SGEEADKTIEAGMDVHLGKPLN 1119 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~--~~~~~~~~l~aG~d~yL~KP~~ 1119 (1131)
||+.. . +|||++|+.. ..+...+++++|+++|+.||++
T Consensus 71 i~~~~----~-~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 71 IMRLR----P-TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred HHHhC----C-CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 99752 2 8999999754 3466778999999999999995
No 106
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.22 E-value=1.2e-10 Score=122.44 Aligned_cols=114 Identities=24% Similarity=0.361 Sum_probs=103.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||++||++..+..+...|+..|+.+..+.++.++++.+... .||+||+|+.||.++|+++++.||
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-------------~~d~ii~d~~~~~~~~~~~~~~l~ 70 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL-------------RFGCVVTDVRMPGIDGIELLRRLK 70 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccC-------------CCCEEEEeCCCCCCcHHHHHHHHH
Confidence 5799999999999999999999999999999999999888652 699999999999999999999998
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
+. .+.+|+|++|+....+....++++|+++|+.||++.++|...++.
T Consensus 71 ~~----~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~ 117 (202)
T PRK09390 71 AR----GSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIER 117 (202)
T ss_pred hc----CCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHH
Confidence 64 346899999999888999999999999999999999999888765
No 107
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.21 E-value=5.6e-11 Score=103.95 Aligned_cols=66 Identities=32% Similarity=0.485 Sum_probs=58.2
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSEL-ETNLRQMNVCANDLLGLLNSILDTSKVEAG 435 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~-~~~l~~i~~~~~~Ll~LIndlLdlskie~g 435 (1131)
|.+|++++||||||||++|.++++++......+++. +++++.|..++++|..+++++|+++|+|+|
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 678999999999999999999999987623334454 899999999999999999999999999987
No 108
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.20 E-value=6.8e-11 Score=139.42 Aligned_cols=98 Identities=21% Similarity=0.412 Sum_probs=79.9
Q ss_pred EEeCHHHHHHHHHHHHHHHhhccCC-C---eEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhh
Q 042553 483 VKGDRVKLKQILSNLLSNAVKFTSE-G---HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAA 558 (1131)
Q Consensus 483 v~gD~~rL~QIL~NLL~NAiKfT~~-G---~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1131)
+.+|...|.|++.||++||++|+.. | .|.|.+...
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~----------------------------------------- 60 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI----------------------------------------- 60 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----------------------------------------
Confidence 4568899999999999999999975 4 355544210
Q ss_pred hccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC------CCCCcccchHHHHHHHHHhCCE-EEEEeecC
Q 042553 559 QRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE------GEGGTGLGLGIVQSLVRLMGGD-IEIVDKEN 625 (1131)
Q Consensus 559 ~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~------~~~GtGLGLsIvk~Lv~~~gG~-I~v~s~~~ 625 (1131)
....+.|+|.|+|+||++++++++|++|++.+. ..||.||||++|+.++++|+|. ++|.++.+
T Consensus 61 ----g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~ 130 (488)
T TIGR01052 61 ----GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTG 130 (488)
T ss_pred ----CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEecC
Confidence 011467999999999999999999999987654 2478999999999999999999 99988764
No 109
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.20 E-value=1.2e-10 Score=124.96 Aligned_cols=103 Identities=7% Similarity=0.004 Sum_probs=86.5
Q ss_pred HHHHHHHHHh---CCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEE---EcCCCCCCCHHHHHHHHhhhhccC
Q 042553 1011 RRVAEINLRH---LGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL---MDCEMPIMNGYEATRKIREEEKRN 1084 (1131)
Q Consensus 1011 ~~~l~~~L~~---~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlIL---mDi~MP~mdG~e~~r~IR~~~~~~ 1084 (1131)
|..+..+|.. .|+.|..+.+++++++.+... +||++| +|+.||++||++++++||+.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~-------------~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~---- 65 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRI-------------SFSAVIFSLSAMRSERREGLSCLTELAIK---- 65 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccC-------------CCCEEEeeccccCCCCCCHHHHHHHHHHH----
Confidence 5567777754 466678999999999988652 689998 78899999999999999975
Q ss_pred CCCccEEEEcccCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1085 QVHIPIIALTAHISGEEADKTI-EAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1085 ~~~ipIIalTa~~~~~~~~~~l-~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.+.+|||++|++..+....+++ ++|+++||.||.+.++|.++|+.+
T Consensus 66 ~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v 112 (207)
T PRK11475 66 FPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLS 112 (207)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 4578999999987776565655 799999999999999999999865
No 110
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.19 E-value=2.5e-10 Score=137.10 Aligned_cols=116 Identities=33% Similarity=0.470 Sum_probs=105.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||++||++..+..+...|...|+.+..+.++.++++.+... .||+|++|+.||+++|+++++.||+
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-------------~~dlvi~d~~~~~~~g~~l~~~i~~ 70 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICERE-------------QPDIILLDVMMPGMDGFEVCRRLKS 70 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhc-------------CCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 799999999999999999998999999999999999998763 6999999999999999999999997
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.. ..+.+|||++|+....+...+++.+|+++|+.||++.++|..+++.+
T Consensus 71 ~~--~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 119 (457)
T PRK09581 71 DP--ATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSL 119 (457)
T ss_pred Cc--ccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 42 23468999999999999999999999999999999999999888753
No 111
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.18 E-value=1.2e-10 Score=131.05 Aligned_cols=103 Identities=33% Similarity=0.483 Sum_probs=90.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLG--ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g--~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.|||||||....|++++.+|...| ..|.++.||.+|++++.+ ..||+|.||+.||.|||++++++
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~-------------~~PDVi~ld~emp~mdgl~~l~~ 68 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK-------------LKPDVITLDVEMPVMDGLEALRK 68 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh-------------cCCCEEEEecccccccHHHHHHH
Confidence 489999999999999999999998 457789999999999987 37999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCC--HHHHHHHHHcCCCEEEECCCC
Q 042553 1077 IREEEKRNQVHIPIIALTAHIS--GEEADKTIEAGMDVHLGKPLN 1119 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KP~~ 1119 (1131)
|-+. ..+|||++++-.. .+...+|++.|+-||+.||..
T Consensus 69 im~~-----~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 69 IMRL-----RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred HhcC-----CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 9764 3689999987443 466778999999999999974
No 112
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.15 E-value=2.3e-10 Score=144.69 Aligned_cols=113 Identities=16% Similarity=0.139 Sum_probs=100.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++.++..+..+|...||.+..+.++.+|++.+... .||+||+|+.||+|+|++++++||
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~-------------~~Dlvl~d~~lp~~~g~~~l~~l~ 74 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAG-------------EIDCVVADHEPDGFDGLALLEAVR 74 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhcc-------------CCCEEEEeccCCCCcHHHHHHHHH
Confidence 5799999999999999999999999999999999999988753 699999999999999999999998
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHH--HHHHHHH
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRD--HLMEAIK 1128 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~--~L~~~I~ 1128 (1131)
.. .+.+|||++|++.+.+...+++.+|+++|+.||.+.. .+..+++
T Consensus 75 ~~----~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~ 122 (665)
T PRK13558 75 QT----TAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIE 122 (665)
T ss_pred hc----CCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHH
Confidence 74 3468999999999999999999999999999997643 4545444
No 113
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.14 E-value=3.6e-10 Score=113.29 Aligned_cols=97 Identities=22% Similarity=0.348 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHHHhhccC----CCeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhcc
Q 042553 486 DRVKLKQILSNLLSNAVKFTS----EGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRD 561 (1131)
Q Consensus 486 D~~rL~QIL~NLL~NAiKfT~----~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1131)
|...+.+++.|+++||++|.- .|.|.|.+...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~-------------------------------------------- 71 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIE-------------------------------------------- 71 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEe--------------------------------------------
Confidence 666899999999999999852 35576665421
Q ss_pred CCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEE
Q 042553 562 ENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636 (1131)
Q Consensus 562 ~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l 636 (1131)
...+.|+|.|+|.||+ ..+++|++|+..+...+|+|+||+|++++ .+++++.+.. +.|++|+++.
T Consensus 72 --~~~~~i~I~D~G~gi~--~~~~~~~~~~~~~~~~~~~GlGL~lv~~~----~~~l~~~~~~--~~Gt~v~i~~ 136 (137)
T TIGR01925 72 --DHEVYITVRDEGIGIE--NLEEAREPLYTSKPELERSGMGFTVMENF----MDDVSVDSEK--EKGTKIIMKK 136 (137)
T ss_pred --CCEEEEEEEEcCCCcC--chhHhhCCCcccCCCCCCCcccHHHHHHh----CCcEEEEECC--CCCeEEEEEe
Confidence 1257899999999998 37789999998766667899999998874 5789998764 4699998763
No 114
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.14 E-value=3.7e-10 Score=104.83 Aligned_cols=98 Identities=42% Similarity=0.684 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhccC--CCeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEE
Q 042553 490 LKQILSNLLSNAVKFTS--EGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEF 567 (1131)
Q Consensus 490 L~QIL~NLL~NAiKfT~--~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (1131)
|.+++.+|++||++|.. .+.|.|.+... ...+
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~----------------------------------------------~~~~ 34 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERD----------------------------------------------GDHL 34 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEec----------------------------------------------CCEE
Confidence 46899999999999998 45666655321 1257
Q ss_pred EEEEEecCCCCCcchHhhhccCC--eecCCCCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEE
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENY--VQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F--~q~~~~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~ 635 (1131)
.|.|.|+|.|+++..++++|.+| +......++.|+||.+|+++++.|||++++.+.. +.|++|++.
T Consensus 35 ~v~i~d~g~g~~~~~~~~~~~~~~~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~--~~g~~~~~~ 102 (103)
T cd00075 35 EIRVEDNGPGIPEEDLERIFERFSDGSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEP--GGGTTFTIT 102 (103)
T ss_pred EEEEEeCCCCCCHHHHHHHhhhhhcCCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCC--CCcEEEEEE
Confidence 89999999999999999999988 3333344689999999999999999999997654 258888775
No 115
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.14 E-value=4.8e-10 Score=120.58 Aligned_cols=113 Identities=10% Similarity=0.046 Sum_probs=94.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC--CCCCCHHHHH
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGA---TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE--MPIMNGYEAT 1074 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~---~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~--MP~mdG~e~~ 1074 (1131)
.||||||++..+..++.+|+..++ .+..+.++.++++.+... +||+||||+. ||.++|.+++
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~-------------~pDlvLlDl~~~l~~~~g~~~i 68 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL-------------RPSVVFINEDCFIHDASNSQRI 68 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc-------------CCCEEEEeCcccCCCCChHHHH
Confidence 489999999999999999987653 456789999999988652 6899999966 8989999999
Q ss_pred HHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCE-EEECCCCHHHHHHHHHHh
Q 042553 1075 RKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV-HLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1075 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~-yL~KP~~~~~L~~~I~~l 1130 (1131)
++|++. .+.++||++|++.+.... .++.+|... |+.|+.+.++|..+|+.+
T Consensus 69 ~~i~~~----~p~~~iivlt~~~~~~~~-~~~~~~~~~~~~~K~~~~~~L~~aI~~v 120 (207)
T PRK15411 69 KQIINQ----HPNTLFIVFMAIANIHFD-EYLLVRKNLLISSKSIKPESLDDLLGDI 120 (207)
T ss_pred HHHHHH----CCCCeEEEEECCCchhHH-HHHHHHhhceeeeccCCHHHHHHHHHHH
Confidence 999875 356899999998776554 355566655 899999999999999864
No 116
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.14 E-value=9.1e-10 Score=117.33 Aligned_cols=115 Identities=30% Similarity=0.351 Sum_probs=101.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRH-LGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~-~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+||++||++..+..+...|+. .++.+. .+.++.+++..+... .||+|++|+.||.++|+++++.
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~dlvi~d~~~~~~~~~~~~~~ 73 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL-------------DPDVILLDLNMKGMSGLDTLNA 73 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhc-------------CCCEEEEecCCCCCcHHHHHHH
Confidence 4799999999999999999975 577765 689999999987653 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+++. .++.|++++|..........++++|+++|+.||++..+|..+++.+
T Consensus 74 l~~~----~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~ 123 (215)
T PRK10403 74 LRRD----GVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAG 123 (215)
T ss_pred HHHh----CCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHH
Confidence 9874 3457899999988888888999999999999999999999988763
No 117
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.14 E-value=1.7e-09 Score=103.73 Aligned_cols=118 Identities=30% Similarity=0.480 Sum_probs=103.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
..+||++|+++.....+...|+..|+. +..+.++.+++..+... .||++++|..+|.++|+++++.
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~di~l~d~~~~~~~~~~~~~~ 71 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GFGFVISDWNMPNMDGLELLKT 71 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhcc-------------CCCEEEEcCCCCCCCHHHHHHH
Confidence 358999999999999999999998984 77899999999987652 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+++... .+.+|+++++.........++++.|+++|+.||++.++|...++++
T Consensus 72 l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~ 123 (129)
T PRK10610 72 IRADGA--MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123 (129)
T ss_pred HHhCCC--cCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHH
Confidence 987531 2357999999888888888999999999999999999999888763
No 118
>PRK13435 response regulator; Provisional
Probab=99.13 E-value=8.4e-10 Score=111.25 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=96.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-CCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-IMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-~mdG~e~~r 1075 (1131)
..+|||+||++.....+...|+..|+.+. .+.++.++++.+... .||+|++|+.|+ +++|+++.+
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~dliivd~~~~~~~~~~~~~~ 71 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR-------------QPDVALVDVHLADGPTGVEVAR 71 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc-------------CCCEEEEeeecCCCCcHHHHHH
Confidence 46899999999999999999998899876 789999999987652 699999999998 599999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.+++. ..+|+|+++.... ...++.+|+++|+.||++.++|.+.|+.+
T Consensus 72 ~l~~~-----~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 118 (145)
T PRK13435 72 RLSAD-----GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYL 118 (145)
T ss_pred HHHhC-----CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHH
Confidence 99763 2689999987532 35678899999999999999999998764
No 119
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.13 E-value=1.2e-09 Score=115.69 Aligned_cols=116 Identities=23% Similarity=0.279 Sum_probs=101.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHL-GATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~-g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
..+||++||++..+..+...|... ++.+ ..+.++.++++.+... .||+|++|+.||.++|+++++
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~dlvl~d~~~~~~~~~~~~~ 69 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQL-------------EPDIVILDLGLPGMNGLDVIP 69 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHHH
Confidence 357999999999999999999876 4664 4789999999887653 699999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.+|+. .+.+|+|++|+.........++++|+++|+.||++..+|..+++.+
T Consensus 70 ~l~~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 120 (211)
T PRK15369 70 QLHQR----WPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTV 120 (211)
T ss_pred HHHHH----CCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHH
Confidence 99874 2468999999999888899999999999999999999999988753
No 120
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.13 E-value=9.6e-10 Score=117.40 Aligned_cols=115 Identities=30% Similarity=0.405 Sum_probs=101.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHL-GATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~-g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+|||+||++..+..+...|... ++.+ ..+.++.+++..+... .||+|++|+.||+++|+++++.
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~dlvl~d~~l~~~~~~~~~~~ 73 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL-------------DPDLILLDLNMPGMNGLETLDK 73 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhC-------------CCCEEEEeCCCCCCcHHHHHHH
Confidence 57999999999999999999765 5654 4689999999988753 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+|+. .+.+|+|++++....+....++++|+++|+.||++.++|...++.+
T Consensus 74 l~~~----~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~ 123 (216)
T PRK10651 74 LREK----SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQA 123 (216)
T ss_pred HHHh----CCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 9875 2467999999998888999999999999999999999999998764
No 121
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.10 E-value=4.2e-10 Score=115.07 Aligned_cols=113 Identities=30% Similarity=0.356 Sum_probs=95.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
..++|++||+++++..+...|...||. |..+.++.++.+..... +||+||||+.||.-|-.+....
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~-------------~pDvVildie~p~rd~~e~~~~ 71 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERL-------------QPDVVILDIEMPRRDIIEALLL 71 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhc-------------CCCEEEEecCCCCccHHHHHHH
Confidence 358999999999999999999999997 45678999999988763 7999999999999994333333
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
. .. +...|||++|++.+++..++++++|+.+||.||++...|+..|.
T Consensus 72 ~-~~----~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 72 A-SE----NVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred h-hc----CCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 2 21 34679999999999999999999999999999999999887663
No 122
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.09 E-value=4.5e-10 Score=136.17 Aligned_cols=107 Identities=21% Similarity=0.373 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCC----eEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccC
Q 042553 487 RVKLKQILSNLLSNAVKFTSEG----HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562 (1131)
Q Consensus 487 ~~rL~QIL~NLL~NAiKfT~~G----~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1131)
...|.+++.||++||++|+..+ .|.|.+...
T Consensus 34 ~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~--------------------------------------------- 68 (659)
T PRK14867 34 LRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKL--------------------------------------------- 68 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC---------------------------------------------
Confidence 3345599999999999999753 466654211
Q ss_pred CCcEEEEEEEecCCCCCcchHhhhccCCeecCC------CCCCcccchHHHHHHHHHh-CCEEEEEeecCCCccEEEEEE
Q 042553 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE------GEGGTGLGLGIVQSLVRLM-GGDIEIVDKENGERGTCFRFN 635 (1131)
Q Consensus 563 ~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~------~~~GtGLGLsIvk~Lv~~~-gG~I~v~s~~~gg~Gt~f~~~ 635 (1131)
....+.|.|.|+|+||+++.++++|++|+..+. ..|+.|+||+++..+++++ ||.|.+.|..+ .|++|++.
T Consensus 69 g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g--~G~~f~i~ 146 (659)
T PRK14867 69 GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTG--DGKIHEME 146 (659)
T ss_pred CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcC--CCEEEEEE
Confidence 112578999999999999999999999887542 4478999999999999986 56688888763 58888888
Q ss_pred Eeccc
Q 042553 636 VFLAI 640 (1131)
Q Consensus 636 l~l~~ 640 (1131)
+++..
T Consensus 147 L~i~i 151 (659)
T PRK14867 147 IKMSV 151 (659)
T ss_pred EEEEe
Confidence 87754
No 123
>PRK03660 anti-sigma F factor; Provisional
Probab=99.05 E-value=1.8e-09 Score=109.33 Aligned_cols=101 Identities=22% Similarity=0.403 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHHHhhccCC----CeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhcc
Q 042553 486 DRVKLKQILSNLLSNAVKFTSE----GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRD 561 (1131)
Q Consensus 486 D~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1131)
|...+.+++.|++.||++|... +.|.+++...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~-------------------------------------------- 71 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE-------------------------------------------- 71 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--------------------------------------------
Confidence 6678999999999999998632 4566654321
Q ss_pred CCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 562 ENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 562 ~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
...+.++|.|+|.||++ ..++|++|++.+...++.|+||+|+++ +.+++++++.+ +.|++|++++++..
T Consensus 72 --~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~~~~~GlGL~i~~~----~~~~i~~~~~~--~~Gt~~~i~~~~~~ 140 (146)
T PRK03660 72 --EEELEITVRDEGKGIED--IEEAMQPLYTTKPELERSGMGFTVMES----FMDEVEVESEP--GKGTTVRMKKYLKK 140 (146)
T ss_pred --CCEEEEEEEEccCCCCh--HHHhhCCCcccCCCCCCccccHHHHHH----hCCeEEEEecC--CCcEEEEEEEEecc
Confidence 12578999999999986 678999999866555689999999885 45689987754 36999999988763
No 124
>PRK09191 two-component response regulator; Provisional
Probab=99.02 E-value=4.3e-09 Score=117.02 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=96.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-CCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-MNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-mdG~e~~r 1075 (1131)
..+||++||++..+..+...|+..|+.+. .+.++.++++.+... .||+||+|+.||+ ++|+++++
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~-------------~~dlvi~d~~~~~~~~g~e~l~ 203 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKT-------------RPGLILADIQLADGSSGIDAVN 203 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhcc-------------CCCEEEEecCCCCCCCHHHHHH
Confidence 35799999999999999999998999887 789999999998753 6999999999995 89999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.+++. . ++|||++|+...... .+...|+++|+.||++.++|..+|+++
T Consensus 204 ~l~~~----~-~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~ 251 (261)
T PRK09191 204 DILKT----F-DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQA 251 (261)
T ss_pred HHHHh----C-CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHH
Confidence 99874 2 689999999765443 344567889999999999999998764
No 125
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.00 E-value=4.8e-07 Score=99.64 Aligned_cols=183 Identities=16% Similarity=0.286 Sum_probs=130.9
Q ss_pred hHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHHHHHHHH
Q 042553 378 SHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLF 457 (1131)
Q Consensus 378 SHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v~~~~ 457 (1131)
-.|+-.-+|+|.-.+.+... ..++.+.+.....|+.-+-+.-.-+.++|.--|- -...+.-+.+.++.+++.+
T Consensus 311 HDeIGQnITAIr~Qa~ivkR-~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP------~~LDdL~l~qai~~l~~Em 383 (497)
T COG3851 311 HDEIGQNITAIRTQAGIVKR-AADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRP------RQLDDLTLEQAIRSLLREM 383 (497)
T ss_pred HHHhcchHHHHHHHHHHHHh-ccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcCC------cccccccHHHHHHHHHHHh
Confidence 46788899999988887655 3444555666666666666666666666532221 1124567888899998887
Q ss_pred HHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCCCCccCcccc
Q 042553 458 HPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQS 537 (1131)
Q Consensus 458 ~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1131)
. ..++||...++-.......-.. -+.-|.+++..+++|-+|+.+...|++.++..
T Consensus 384 ~--~~ergihcq~~~~~n~~~ldet---~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~-------------------- 438 (497)
T COG3851 384 E--LEERGIHCQLDWRINETALDET---QRVTLYRLCQELLNNICKHADASAVTIQLWQQ-------------------- 438 (497)
T ss_pred h--hhhcCeEEEeccccCcccCCcc---eeEeHHHHHHHHHHHHHhccccceEEEEEeeC--------------------
Confidence 5 5778888777643221100011 12358899999999999999998888877532
Q ss_pred hhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHHHHHHhCCE
Q 042553 538 ISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGD 617 (1131)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~Lv~~~gG~ 617 (1131)
...+.++|+|+|.|+|+. .+-+|.||.=.|+=|.++||+
T Consensus 439 --------------------------~e~l~Lei~DdG~Gl~~~---------------~~v~G~Gl~GmrERVsaLGG~ 477 (497)
T COG3851 439 --------------------------DERLMLEIEDDGSGLPPG---------------SGVQGFGLTGMRERVSALGGT 477 (497)
T ss_pred --------------------------CcEEEEEEecCCcCCCCC---------------CCccCcCcchHHHHHHHhCCc
Confidence 125789999999999874 235799999999999999999
Q ss_pred EEEEeecCCCccEEEEEEEe
Q 042553 618 IEIVDKENGERGTCFRFNVF 637 (1131)
Q Consensus 618 I~v~s~~~gg~Gt~f~~~l~ 637 (1131)
++++|. .||++.+++|
T Consensus 478 ltlssq----~GTrviVnLP 493 (497)
T COG3851 478 LTLSSQ----HGTRVIVNLP 493 (497)
T ss_pred eEEEec----cCcEEEEecc
Confidence 999762 6999999886
No 126
>PRK10693 response regulator of RpoS; Provisional
Probab=98.97 E-value=2.8e-09 Score=121.59 Aligned_cols=86 Identities=28% Similarity=0.396 Sum_probs=76.7
Q ss_pred EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHH
Q 042553 1027 ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI 1106 (1131)
Q Consensus 1027 ~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l 1106 (1131)
.+.++++|++.+... .||+||+|+.||+|+|++++++||+. .+.+|||++|+....+...+++
T Consensus 2 ~a~~g~~al~~l~~~-------------~pDlVL~D~~mp~~~Gle~~~~ir~~----~~~ipiI~lt~~~~~~~~~~al 64 (303)
T PRK10693 2 LAANGVDALELLGGF-------------TPDLIICDLAMPRMNGIEFVEHLRNR----GDQTPVLVISATENMADIAKAL 64 (303)
T ss_pred EeCCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHHHHHhc----CCCCcEEEEECCCCHHHHHHHH
Confidence 478999999998753 69999999999999999999999975 3468999999999999999999
Q ss_pred HcCCCEEEECCC-CHHHHHHHHHH
Q 042553 1107 EAGMDVHLGKPL-NRDHLMEAIKY 1129 (1131)
Q Consensus 1107 ~aG~d~yL~KP~-~~~~L~~~I~~ 1129 (1131)
++|++||+.||+ +.++|.++++.
T Consensus 65 ~~Ga~dyl~KP~~~~~~L~~~i~~ 88 (303)
T PRK10693 65 RLGVQDVLLKPVKDLNRLREMVFA 88 (303)
T ss_pred HCCCcEEEECCCCcHHHHHHHHHH
Confidence 999999999999 58888887754
No 127
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.96 E-value=1.9e-07 Score=101.52 Aligned_cols=212 Identities=18% Similarity=0.267 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042553 350 CASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429 (1131)
Q Consensus 350 ~~~l~~~~ea~~~ae~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdl 429 (1131)
+.++.++.-..++.|++..+++.- .-|..-|-+.+-.+|++.....++... ....+.+++..|..-|+.+-.+
T Consensus 236 LkeL~qrvv~tQedEr~rlaRELH-----DGIsQ~LVs~k~~lela~~ql~~p~~~--a~~aieKaa~aL~~Ai~EVRRi 308 (459)
T COG4564 236 LKELAQRVVDTQEDERARLARELH-----DGISQNLVSVKCALELAARQLNPPKGG--AHPAIEKAADALNGAIKEVRRI 308 (459)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHhccCCCCCCC--CchhhhhHHHHHHHHHHHHHHh
Confidence 344444444445555554443331 124455667777778776554443211 1245677778888888776555
Q ss_pred HhhhcCCCcc-eeeeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC
Q 042553 430 SKVEAGKMQL-IEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG 508 (1131)
Q Consensus 430 skie~g~~~l-~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G 508 (1131)
|-- +.. -....-|..-++.+++.|+ ++-|+++.+..+..+... ..--...|.+|..--++|-=|+...-
T Consensus 309 SH~----LRP~~LDDLGL~aALe~L~~~f~---~~tg~~itle~~~~p~~l---~~e~~talyRv~QEaltNIErHa~At 378 (459)
T COG4564 309 SHD----LRPRALDDLGLTAALEALLEDFK---ERTGIEITLEFDTQPGKL---KPEVATALYRVVQEALTNIERHAGAT 378 (459)
T ss_pred ccc----cChhhhhhhhHHHHHHHHHHHhh---hccCeEEEEEecCCcccC---CcHHHHHHHHHHHHHHHHHHhhcCCe
Confidence 431 110 1123345556666666665 667888877654322111 11234679999999999999998666
Q ss_pred eEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhcc
Q 042553 509 HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFE 588 (1131)
Q Consensus 509 ~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe 588 (1131)
.|.|.+.. ....+++.|.|+|.|++.+...
T Consensus 379 rv~ill~~----------------------------------------------~~d~vql~vrDnG~GF~~~~~~---- 408 (459)
T COG4564 379 RVTILLQQ----------------------------------------------MGDMVQLMVRDNGVGFSVKEAL---- 408 (459)
T ss_pred EEEEEecc----------------------------------------------CCcceEEEEecCCCCccchhhc----
Confidence 77776531 1125889999999999876432
Q ss_pred CCeecCCCCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 589 NYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 589 ~F~q~~~~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
..-.||||-=.|+=+...||+..|+|++ +||..++.+|+.
T Consensus 409 --------~~~~GiGLRNMrERma~~GG~~~v~s~p---~GTel~v~Lp~~ 448 (459)
T COG4564 409 --------QKRHGIGLRNMRERMAHFGGELEVESSP---QGTELTVLLPLD 448 (459)
T ss_pred --------cCccccccccHHHHHHHhCceEEEEecC---CCcEEEEEecch
Confidence 1126999999999999999999999875 599999888765
No 128
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.91 E-value=2.1e-08 Score=91.98 Aligned_cols=112 Identities=39% Similarity=0.560 Sum_probs=99.5
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhh
Q 042553 1002 LVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEE 1081 (1131)
Q Consensus 1002 LvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~ 1081 (1131)
|++|+++..+..+...+...|+.+..+.+..++++.+... .||++++|..++..+|++.++.+++.
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ii~~~~~~~~~~~~~~~~l~~~- 66 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE-------------KPDLILLDIMMPGMDGLELLRRIRKR- 66 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC-------------CCCEEEEecCCCCCchHHHHHHHHHh-
Confidence 4789999999999999998899999999999999988653 69999999999999999999999875
Q ss_pred ccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1082 KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1082 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.+.+|+++++.........+++..|+++|+.||++..+|...++.+
T Consensus 67 ---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 67 ---GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ---CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 2357999999877777788899999999999999999999988764
No 129
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.89 E-value=1.7e-06 Score=101.53 Aligned_cols=123 Identities=26% Similarity=0.347 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccCC-CCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCC
Q 042553 449 LLEDVVDLFHPVAMRKGVEVVLDPSD-GSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527 (1131)
Q Consensus 449 ll~~v~~~~~~~a~~k~i~l~~~~~~-~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~ 527 (1131)
+.+.+..........-++.+..+... ...+ -..-..-+.+|+.-.|+||+||...-+|.|++...
T Consensus 242 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L----~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~---------- 307 (365)
T COG4585 242 LVEALRALLADFEERTGITVDLSLGSELERL----PPEAEDALFRIVQEALTNAIRHAQATEVRVTLERT---------- 307 (365)
T ss_pred HHHHHHHHHHHHHhhcCeEEEEecCcccccC----ChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEc----------
Confidence 33444344444445556666655432 1111 12345679999999999999999988888877542
Q ss_pred CCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHH
Q 042553 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIV 607 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIv 607 (1131)
...++++|.|+|.|.+++.. +.|+||.=.
T Consensus 308 ------------------------------------~~~l~l~V~DnG~Gf~~~~~---------------~~~~GL~~m 336 (365)
T COG4585 308 ------------------------------------DDELRLEVIDNGVGFDPDKE---------------GGGFGLLGM 336 (365)
T ss_pred ------------------------------------CCEEEEEEEECCcCCCcccc---------------CCCcchhhH
Confidence 12589999999999987643 268999999
Q ss_pred HHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 608 QSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 608 k~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
|+=|+.+||++++.|.+ |+||++++++|+
T Consensus 337 reRv~~lgG~l~i~S~~--g~Gt~i~i~lPl 365 (365)
T COG4585 337 RERVEALGGTLTIDSAP--GQGTTVTITLPL 365 (365)
T ss_pred HHHHHHcCCEEEEEecC--CCceEEEEecCC
Confidence 99999999999999876 479999999874
No 130
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.87 E-value=8.5e-07 Score=96.05 Aligned_cols=193 Identities=26% Similarity=0.375 Sum_probs=129.5
Q ss_pred HHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHH
Q 042553 369 NKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGE 448 (1131)
Q Consensus 369 ~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ 448 (1131)
.|...+.-+.|-+++=|+.|.+++.+-..... ++ ..+.+...+.....| .++-++|--+ ....++...
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~-~~-~~~~~~~~~~Ri~sl-a~~He~L~~s---------~~~~~~~~~ 85 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFE-DE-VLEALRESQNRIQSL-ALIHELLYKS---------GDDTWDFAS 85 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcC-CH-HHHHHHHHHHHHHHH-HHHHHHHhcC---------CcceEcHHH
Confidence 35566778899999999999998876433222 11 333333333322222 2344444322 235688888
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEe-CHHHHHHHHHHHHHHHhhcc----CCCeEEEEEeecCCCCCC
Q 042553 449 LLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKG-DRVKLKQILSNLLSNAVKFT----SEGHISVRACVKKPSAIG 523 (1131)
Q Consensus 449 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~g-D~~rL~QIL~NLL~NAiKfT----~~G~I~v~~~~~~~~~~~ 523 (1131)
+++.+...+.+....+.+.+..+..+... +.. -..-|--|+.-|++||+||. +.|.|.|.+.....
T Consensus 86 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~-----l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~---- 156 (221)
T COG3920 86 YLELLASNLFPSYGGKDIRLILDSGPNVF-----LDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD---- 156 (221)
T ss_pred HHHHHHHHHHHhcCCCCceEEEecCCceE-----ECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCC----
Confidence 98888888877655566777666544211 111 23458889999999999996 35777777654311
Q ss_pred CCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccc
Q 042553 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLG 603 (1131)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLG 603 (1131)
...+.+.|.|+|.|+|.+.- . ...|+|
T Consensus 157 ----------------------------------------~~~~~l~v~deg~G~~~~~~------------~-~~~g~G 183 (221)
T COG3920 157 ----------------------------------------GGRFLLTVWDEGGGPPVEAP------------L-SRGGFG 183 (221)
T ss_pred ----------------------------------------CCeEEEEEEECCCCCCCCCC------------C-CCCCcH
Confidence 00467899999999987621 1 256999
Q ss_pred hHHHHHHH-HHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 604 LGIVQSLV-RLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 604 LsIvk~Lv-~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
+.+++.+| ++.||.+..... .||.|++.+|.+
T Consensus 184 ~~Lv~~lv~~q~~g~~~~~~~----~Gt~~~i~~~~~ 216 (221)
T COG3920 184 LQLVERLVPEQLGGELEDERP----DGTEFRLRFPLS 216 (221)
T ss_pred HHHHHHHHHHHcCCeEEEEcC----CCEEEEEEEecc
Confidence 99999999 899999998542 399999998765
No 131
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.85 E-value=1.3e-06 Score=105.44 Aligned_cols=185 Identities=21% Similarity=0.217 Sum_probs=110.1
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~l 449 (1131)
+..--..-.|.|.+=|++|..+++.-. .+.+..+... |..+++ .++++.+ ...++.+-
T Consensus 259 ~~lqsqi~pHfL~NtL~~I~~~~~~~~---------~~~~~~~v~~---l~~llR--~~l~~~~--------~~~~l~~E 316 (456)
T COG2972 259 RALQSQINPHFLYNTLETIRMLAEEDD---------PEEAAKVVKA---LSKLLR--YSLSNLD--------NIVTLEIE 316 (456)
T ss_pred HHHHhhcchHHHHhHHHHHHHHHHhcC---------HHHHHHHHHH---HHHHHH--HHhhCCC--------CeeeHHHH
Confidence 333334568999999999999886510 1112222222 222222 2223322 23444444
Q ss_pred HHHHHHHHHHHHHcCCcEEE--EccCCCCccccceEEeCHHHHHHHHHHHHHHHhhcc-----CCCeEEEEEeecCCCCC
Q 042553 450 LEDVVDLFHPVAMRKGVEVV--LDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFT-----SEGHISVRACVKKPSAI 522 (1131)
Q Consensus 450 l~~v~~~~~~~a~~k~i~l~--~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT-----~~G~I~v~~~~~~~~~~ 522 (1131)
+.-+..-+..+-.+-+..+. ++.++... . ..| +..+|..|++||++|. +.|.|.+.+...
T Consensus 317 ~~~~~kyl~iq~~r~~~~le~~~~i~~~~~----~-l~~---p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~----- 383 (456)
T COG2972 317 LLLIEKYLEIQKLRIGDRLEVPLPIDEELE----P-LID---PKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQ----- 383 (456)
T ss_pred HHHHHHHHHHHHhccCcceEEEeccCcccc----c-ccC---chHHHhHHHHHHHHHhcccCCCCCEEEEEEEEc-----
Confidence 44343333322222233333 33333211 1 124 4568999999999997 234666655321
Q ss_pred CCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCC-cc
Q 042553 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGG-TG 601 (1131)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~G-tG 601 (1131)
...+.++|.|+|+||+++....+.+.= ++ .|
T Consensus 384 -----------------------------------------~~~i~i~i~Dng~g~~~~~~~~~~~~~-------~~r~g 415 (456)
T COG2972 384 -----------------------------------------DDVIQISISDNGPGIDEEKLEGLSTKG-------ENRSG 415 (456)
T ss_pred -----------------------------------------CCEEEEEEeeCCCCCChhHHHHHHhhc-------cCccc
Confidence 236899999999999999887665431 12 59
Q ss_pred cchHHHHHHHHHhCCE--EEEEeecCCCccEEEEEEEecc
Q 042553 602 LGLGIVQSLVRLMGGD--IEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 602 LGLsIvk~Lv~~~gG~--I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
+||.=+++.++.+-|+ +.++|+. +.||...+.+|..
T Consensus 416 iGL~Nv~~rl~~~~g~~~~~i~s~~--~~gt~v~~~~~~~ 453 (456)
T COG2972 416 IGLSNVKERLKLYFGEPGLSIDSQP--GKGTFVQIIIPKR 453 (456)
T ss_pred ccHHHHHHHHHHeeCCcceeEeecC--CCcEEEEEEeehh
Confidence 9999999999999888 4667765 4699999988753
No 132
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.82 E-value=1e-07 Score=118.33 Aligned_cols=140 Identities=26% Similarity=0.486 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHH--cCCcEEEEccCCCCccccceEEeCHHHHHHH---HHHHHHHHhhcc-------------CC
Q 042553 446 VGELLEDVVDLFHPVAM--RKGVEVVLDPSDGSVLKFSKVKGDRVKLKQI---LSNLLSNAVKFT-------------SE 507 (1131)
Q Consensus 446 L~~ll~~v~~~~~~~a~--~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QI---L~NLL~NAiKfT-------------~~ 507 (1131)
+..++...-.+.+.++. .|.|++.+...+ ...|+.-|.++ |..||.||+.|. +.
T Consensus 392 ~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~--------telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~ 463 (716)
T COG0643 392 FEQVFSRFPRMVRDLARKLGKQVELVIEGED--------TELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEE 463 (716)
T ss_pred HHHHHhhccHHHHHHHHHhCCeeEEEEecCC--------eeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCc
Confidence 33444444444444443 366777776554 33488888877 899999999995 34
Q ss_pred CeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcch-----
Q 042553 508 GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEK----- 582 (1131)
Q Consensus 508 G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~----- 582 (1131)
|.|.+++... +..+.|+|+|.|.||+.+.
T Consensus 464 G~I~L~A~~~----------------------------------------------gn~ivIev~DDG~Gid~ekI~~KA 497 (716)
T COG0643 464 GTITLSAYHE----------------------------------------------GNNIVIEVSDDGAGIDREKIREKA 497 (716)
T ss_pred ceEEEEEEcC----------------------------------------------CCeEEEEEeeCCCCCCHHHHHHHH
Confidence 6777766432 2368999999999998543
Q ss_pred -------------------HhhhccCCeec-CC--CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 583 -------------------RKTVFENYVQV-KE--GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 583 -------------------~~~IFe~F~q~-~~--~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
..-||.|=|.+ +. .-.|=|.||=+||+-++.+||+|.|+|+. |+||+|++.|||..
T Consensus 498 iErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~--G~GT~Fti~LPLTL 575 (716)
T COG0643 498 IERGLITEEEAETLSDEEILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEP--GKGTTFTIRLPLTL 575 (716)
T ss_pred HHcCCCChHHhccCCHHHHHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEecC--CCCeEEEEecCcHH
Confidence 34578875444 33 23699999999999999999999999876 58999999999975
Q ss_pred c
Q 042553 641 R 641 (1131)
Q Consensus 641 ~ 641 (1131)
.
T Consensus 576 a 576 (716)
T COG0643 576 A 576 (716)
T ss_pred H
Confidence 3
No 133
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.80 E-value=2.1e-06 Score=99.79 Aligned_cols=187 Identities=22% Similarity=0.331 Sum_probs=130.3
Q ss_pred HHchHhhHHHHHHHHHHHHH----HHhhCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHH
Q 042553 375 ANASHDIRAALAGITGLIEL----CYVEAG--PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGE 448 (1131)
Q Consensus 375 A~iSHELRTPLt~I~g~~el----l~~~~~--~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ 448 (1131)
+.|+-||---|+=...++.+ |..... ..++.++.+..|+...+.--.-+..||..-|+ ..+.-++..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHH
Confidence 56777777777777666653 332222 23445566666666655555555566655443 234567888
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEe-CHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCC
Q 042553 449 LLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKG-DRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSL 527 (1131)
Q Consensus 449 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~g-D~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~ 527 (1131)
-++++++.|. .+-|+.+.++..-++.. +.. -...+-||+.-=++||+||....+|.|.+...
T Consensus 447 AL~~~~~~f~---~qtg~~~~l~~qlp~~~----lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~---------- 509 (574)
T COG3850 447 ALEQMLAEFS---NQTGITVTLDYQLPPRA----LPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQN---------- 509 (574)
T ss_pred HHHHHHHHHH---hccCCeEEEeccCCCCC----CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEec----------
Confidence 8999988876 45678888776543321 111 23357789999999999999988888877432
Q ss_pred CCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHH
Q 042553 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIV 607 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIv 607 (1131)
...+.+.|+|+|+|||+..- .+| =-||.|.
T Consensus 510 ------------------------------------~g~~~~~VeDnG~Gi~~~~e-------------~~g-HyGL~IM 539 (574)
T COG3850 510 ------------------------------------DGQVTLTVEDNGVGIDEAAE-------------PSG-HYGLNIM 539 (574)
T ss_pred ------------------------------------CCeEEEEEeeCCcCCCCccC-------------CCC-CcchHHH
Confidence 12578999999999998621 124 6899999
Q ss_pred HHHHHHhCCEEEEEeecCCCccEEEEEEEe
Q 042553 608 QSLVRLMGGDIEIVDKENGERGTCFRFNVF 637 (1131)
Q Consensus 608 k~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~ 637 (1131)
+.=++.+||.+.+++.++ .||.+.++++
T Consensus 540 ~ERA~~L~~~L~i~~~~~--gGT~V~ltf~ 567 (574)
T COG3850 540 RERAQRLGGQLRIRRREG--GGTEVSLTFP 567 (574)
T ss_pred HHHHHHhcCeEEEeecCC--CCeEEEEEec
Confidence 999999999999998874 4999998874
No 134
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.71 E-value=8.7e-08 Score=121.80 Aligned_cols=392 Identities=19% Similarity=0.210 Sum_probs=241.6
Q ss_pred HHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHH
Q 042553 368 MNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447 (1131)
Q Consensus 368 ~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~ 447 (1131)
.....++..++|..|+|.+.+.+....+...........-.++...+....+..+++.-.|.++...|.-......+.+.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~ 463 (786)
T KOG0519|consen 384 KARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLV 463 (786)
T ss_pred chhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhccHH
Confidence 33445566667999999999999887544333222222333555666677888899999999998888777777889999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhh--ccCCCe-EEEEEeecCCCCCCC
Q 042553 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVK--FTSEGH-ISVRACVKKPSAIGN 524 (1131)
Q Consensus 448 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiK--fT~~G~-I~v~~~~~~~~~~~~ 524 (1131)
.++.............+...+.++..... +..+.+|..++.|++.+..+++.+ ++..|+ ....+....-....
T Consensus 464 ~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v- 539 (786)
T KOG0519|consen 464 ELMSGEISDISCISLGKTFSFTLDLLTNL---PKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAELLGISV- 539 (786)
T ss_pred HHHHHHhhhhhhhccCceeeEEEEeccCC---CccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEecccCccc-
Confidence 99999999998888777777776654433 245788999999999999999999 998873 22222221100000
Q ss_pred CCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC----CCCc
Q 042553 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----EGGT 600 (1131)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~----~~Gt 600 (1131)
.. +. .++..+. ..........+.+.+++++.|+........|..|.+.... ..+.
T Consensus 540 -d~--~~-----~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 598 (786)
T KOG0519|consen 540 -DV--SL-----SLSLAFW-------------FLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGS 598 (786)
T ss_pred -cc--cc-----cchhhhh-------------hcccccccchheEEeeeccccccCCCcchhhhhhhccccchhhccccc
Confidence 00 00 0010000 0001112235789999999999999999888888776442 2578
Q ss_pred ccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccccccccCCCCCcccccccCCCCCCCccccccccccccCCCC
Q 042553 601 GLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSP 680 (1131)
Q Consensus 601 GLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1131)
+++|+.|++..+.++|.+++..... |..-.-.+-+... .... .... +.... +.
T Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~~--~~~~------~~~~-~~~~~--------------~~- 651 (786)
T KOG0519|consen 599 GLSLALCPENSQLMEGNIGLVPSSD---GLPKSPSLCLEAC--LRVE------LNSM-GSKLS--------------GN- 651 (786)
T ss_pred ccccccchhhHHhhhcccccccccc---cCCccHHHHHHhh--cccc------cccc-ccccC--------------CC-
Confidence 9999999999999999999864332 1110000000000 0000 0000 00000 00
Q ss_pred CccccCCCCccccCCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHHhhhcCCCccccCCCCC
Q 042553 681 SLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLG 760 (1131)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 760 (1131)
+.....+ .......|.++++++||...++++..+|+.+|..+..+.++.+....+. +
T Consensus 652 --~e~~~~~-----~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-----------~----- 708 (786)
T KOG0519|consen 652 --PEKLAEP-----RDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-----------P----- 708 (786)
T ss_pred --cccccCc-----cccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-----------C-----
Confidence 0000000 0233456889999999999999999999999999999886665433332 0
Q ss_pred CCCCCcCCCCccCCcccccccccccchhhhccccccCCCceEEEEecCCCcchHHHHHHHHHHhhhcccceeEEEccCCC
Q 042553 761 KSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPT 840 (1131)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vid~~~~~~~~~~~~~~~~~~~~~~~~~vv~l~~~~ 840 (1131)
...-..++.|..++.|||.+......+..+.+..|+. +.+...+..
T Consensus 709 -------~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pIvA-lTa~~~~~~-------------------------- 754 (786)
T KOG0519|consen 709 -------PHSYDVIFMDLQMPEMDGYEATREIRKKERWHLPIVA-LTADADPST-------------------------- 754 (786)
T ss_pred -------CCcccEEEEEcCCcccchHHHHHHHHHhhcCCCCEEE-EecCCcHHH--------------------------
Confidence 1112356788888999987776655444332222221 112111100
Q ss_pred ccccccCCCccccCCCCCccccccccchhHHHHHhh
Q 042553 841 SRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKL 876 (1131)
Q Consensus 841 ~~~i~~~~l~~~~~~~~~~~l~kP~~~s~l~~~l~~ 876 (1131)
.+...-.|.+.|+.||+....|...+..
T Consensus 755 --------~~~c~~~Gmd~yl~KP~~~~~l~~~l~~ 782 (786)
T KOG0519|consen 755 --------EEECLEVGMDGYLSKPFTLEKLVKILRE 782 (786)
T ss_pred --------HHHHHHhCCceEEcccccHHHHHHHHHH
Confidence 0111223678999999999998887754
No 135
>PRK15029 arginine decarboxylase; Provisional
Probab=98.70 E-value=6.6e-08 Score=120.53 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=85.5
Q ss_pred eEEEEeCCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHH
Q 042553 1000 KILVADDSMM--------LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGY 1071 (1131)
Q Consensus 1000 ~ILvvdD~~~--------~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~ 1071 (1131)
+||||||+.. .++.+...|+..||+|..+.++++|++.+... ..||+||+|++||+++|+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~------------~~~DlVLLD~~LPd~dG~ 69 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN------------EAIDCLMFSYQMEHPDEH 69 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc------------CCCcEEEEECCCCCCccc
Confidence 6999999995 68899999999999999999999999999752 269999999999999998
Q ss_pred ----HHHHHHhhhhccCCCCccEEEEcccCC--HHHHHHHHHcCCCEEEECCCCHHHH
Q 042553 1072 ----EATRKIREEEKRNQVHIPIIALTAHIS--GEEADKTIEAGMDVHLGKPLNRDHL 1123 (1131)
Q Consensus 1072 ----e~~r~IR~~~~~~~~~ipIIalTa~~~--~~~~~~~l~aG~d~yL~KP~~~~~L 1123 (1131)
+++++||+. ...+|||++|+... ...-...++ -+++|+-+--+..++
T Consensus 70 ~~~~ell~~IR~~----~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 122 (755)
T PRK15029 70 QNVRQLIGKLHER----QQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADF 122 (755)
T ss_pred hhHHHHHHHHHhh----CCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHH
Confidence 899999964 34799999999885 222222222 267787776554443
No 136
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.68 E-value=1.5e-07 Score=97.14 Aligned_cols=102 Identities=22% Similarity=0.291 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHHHhhccCC----CeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhcc
Q 042553 486 DRVKLKQILSNLLSNAVKFTSE----GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRD 561 (1131)
Q Consensus 486 D~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1131)
|...++.++..++.||++|... |.|.|++...
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~-------------------------------------------- 74 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIY-------------------------------------------- 74 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEE--------------------------------------------
Confidence 5567889999999999999853 4566665421
Q ss_pred CCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC--CCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 562 ENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG--EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 562 ~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~--~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
...+.|.|+|+|+||+++.++..|.||++.+.. ..+.|+||.|+++|++. +.+.+ . .|++|++..++.
T Consensus 75 --~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~~~~~~G~GL~li~~l~d~----v~~~~--~--~G~~v~~~k~~~ 144 (161)
T PRK04069 75 --EDRLEIVVADNGVSFDYETLKSKLGPYDISKPIEDLREGGLGLFLIETLMDD----VTVYK--D--SGVTVSMTKYIN 144 (161)
T ss_pred --CCEEEEEEEECCcCCChHHhccccCCCCCCCcccccCCCceeHHHHHHHHHh----EEEEc--C--CCcEEEEEEEcC
Confidence 126899999999999999999999999865442 34779999999999986 66653 2 478898887765
Q ss_pred cc
Q 042553 640 IR 641 (1131)
Q Consensus 640 ~~ 641 (1131)
..
T Consensus 145 ~~ 146 (161)
T PRK04069 145 RE 146 (161)
T ss_pred ch
Confidence 43
No 137
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.62 E-value=1.4e-07 Score=103.94 Aligned_cols=112 Identities=31% Similarity=0.402 Sum_probs=94.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHL-GAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~-g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+|+++||++..+..+..++... .++ +..+.++.++++.++.. .+|++|+|+.||+|+|+++.+.
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~fldI~~~~~~G~ela~~ 68 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL-------------RPDLVFLDIAMPDINGIELAAR 68 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc-------------CCCeEEEeeccCccchHHHHHH
Confidence 46999999999999988888732 222 33789999999999863 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
||.. .+..+|+++|++. +....+++..+-||+.||++.+.|...++.
T Consensus 69 i~~~----~~~~~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~ 115 (244)
T COG3279 69 IRKG----DPRPAIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLER 115 (244)
T ss_pred hccc----CCCCeEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHH
Confidence 9986 3457899999974 455677788899999999999999998874
No 138
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.42 E-value=2e-06 Score=88.52 Aligned_cols=99 Identities=22% Similarity=0.347 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHhhccCC----CeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccC
Q 042553 487 RVKLKQILSNLLSNAVKFTSE----GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562 (1131)
Q Consensus 487 ~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1131)
...+..++..++.||++|+.. |.|.|.++..
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~--------------------------------------------- 74 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIY--------------------------------------------- 74 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEe---------------------------------------------
Confidence 346888999999999999843 4676665431
Q ss_pred CCcEEEEEEEecCCCCCcchHhhhccCCeecCC--CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE--GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 563 ~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~--~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
...+.+.|.|+|.|++++.++..|.+++..+. ...+.|+||.|+|+|++ ++.+.+ . .|+++++...++
T Consensus 75 -~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~~~~~~G~GL~Li~~L~D----~v~~~~--~--~G~~l~l~k~~~ 144 (159)
T TIGR01924 75 -EDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPIDDLREGGLGLFLIETLMD----EVEVYE--D--SGVTVAMTKYLN 144 (159)
T ss_pred -CCEEEEEEEEcccccCchhhccccCCCCCCCCcccCCCCccCHHHHHHhcc----EEEEEe--C--CCEEEEEEEEEc
Confidence 12588999999999999999999988765433 23467999999999998 677754 2 367888776555
No 139
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.37 E-value=7.2e-05 Score=86.03 Aligned_cols=129 Identities=28% Similarity=0.404 Sum_probs=88.2
Q ss_pred eeeecHHHHHHHHHHHHHHHHHc--CCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhcc-----CCCeEEEE
Q 042553 441 EEDFDVGELLEDVVDLFHPVAMR--KGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFT-----SEGHISVR 513 (1131)
Q Consensus 441 ~~~~dL~~ll~~v~~~~~~~a~~--k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT-----~~G~I~v~ 513 (1131)
.+.+.|.+-++++-.-++-.-.+ -.+++.++.++... .+. =|. -+|.=|+.|||||. +.|.|.|+
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~----~~~-iP~---filQPLVENAIKHG~~~~~~~g~V~I~ 485 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELR----QVQ-IPS---FILQPLVENAIKHGISQLKDTGRVTIS 485 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHh----hcc-Cch---hhhhHHHHHHHHhcccchhcCCceEEE
Confidence 35688888888887755432211 23455555443211 011 011 25777899999996 24677777
Q ss_pred EeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeec
Q 042553 514 ACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQV 593 (1131)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~ 593 (1131)
+...+ ..++++|+|+|.||+++
T Consensus 486 V~~~d----------------------------------------------~~l~i~VeDng~li~p~------------ 507 (557)
T COG3275 486 VEKED----------------------------------------------ADLRIEVEDNGGLIQPD------------ 507 (557)
T ss_pred EEEeC----------------------------------------------CeEEEEEecCCCCcCCC------------
Confidence 64321 24899999999999887
Q ss_pred CCCCCCcccchHHHHHHHHHhCC---EEEEEeecCCCccEEEEEEEecc
Q 042553 594 KEGEGGTGLGLGIVQSLVRLMGG---DIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 594 ~~~~~GtGLGLsIvk~Lv~~~gG---~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
...|+|+||..+++=++.+=| -+.+++.+. .||++.|.+|+.
T Consensus 508 --~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q--~gTri~f~lp~~ 552 (557)
T COG3275 508 --EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQ--AGTRIIFRLPLQ 552 (557)
T ss_pred --CCCCCChHHHHHHHHHHHhcCccccceEEeccC--CCcEEEEEecCc
Confidence 235999999999998888877 677776653 599999999875
No 140
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.32 E-value=1.8e-06 Score=73.47 Aligned_cols=63 Identities=35% Similarity=0.457 Sum_probs=53.3
Q ss_pred HHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042553 371 SLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEA 434 (1131)
Q Consensus 371 s~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~ 434 (1131)
..|++.++|||||||++|.++++.+.... ..++....++.+..+++++..++++++++++.++
T Consensus 3 ~~~~~~i~Hel~~pl~~i~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 3 REFLANLSHELRTPLTAIRGYLELLEDTE-LSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999876533 3344478889999999999999999999999875
No 141
>PF14501 HATPase_c_5: GHKL domain
Probab=98.32 E-value=8.1e-06 Score=77.21 Aligned_cols=94 Identities=21% Similarity=0.360 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHHHhhccCC----CeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhcc
Q 042553 486 DRVKLKQILSNLLSNAVKFTSE----GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRD 561 (1131)
Q Consensus 486 D~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1131)
|..-|-.+|.|||+||++++.. ..|.+.+...
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~-------------------------------------------- 37 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREE-------------------------------------------- 37 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec--------------------------------------------
Confidence 4567889999999999999753 2455554321
Q ss_pred CCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 562 ENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 562 ~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
...+.|.|+.+-.+ + .+.++ ......++.|+||.+++++++.++|++.+..+. -.|++.+.+
T Consensus 38 --~~~~~i~i~N~~~~---~-~~~~~----~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~-----~~f~~~i~i 99 (100)
T PF14501_consen 38 --NGFLVIIIENSCEK---E-IEKLE----SSSSKKKGHGIGLKNVKKILEKYNGSLSIESED-----GIFTVKIVI 99 (100)
T ss_pred --CCEEEEEEEECCCC---c-ccccc----ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEEC-----CEEEEEEEE
Confidence 12678999998544 2 23333 223345789999999999999999999987542 256666544
No 142
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.28 E-value=6.2e-05 Score=84.23 Aligned_cols=198 Identities=22% Similarity=0.322 Sum_probs=129.0
Q ss_pred HHHHHHHHHhhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc------ceeeeecHHHHHHHHHHHHHH
Q 042553 388 ITGLIELCYVEAGP--GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQ------LIEEDFDVGELLEDVVDLFHP 459 (1131)
Q Consensus 388 I~g~~ell~~~~~~--~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~------l~~~~~dL~~ll~~v~~~~~~ 459 (1131)
+.|..|.-.....+ ...++..|+....+--.+.-|+|+=+-+-- +|+-. .-....++.++|+++.+..+.
T Consensus 154 A~Gl~E~~~~~~dp~~~~~iqyFLdr~y~sRIsiRMLv~qh~~l~~--~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~ 231 (414)
T KOG0787|consen 154 AQGLIEYREKDGDPVTEKNIQYFLDRFYMSRISIRMLVNQHLLLFA--SGKPDHPRHIGIIDPRCSVKKVIKDASENARF 231 (414)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhheec--CCCCCCcceeeeeCCCCCHHHHHHHHHHHHHH
Confidence 35666653222222 234555666655443334445665443322 34332 123468999999999999888
Q ss_pred HHHcCCc---EEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC-----Ce----EEEEEeecCCCCCCCCCC
Q 042553 460 VAMRKGV---EVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-----GH----ISVRACVKKPSAIGNPSL 527 (1131)
Q Consensus 460 ~a~~k~i---~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-----G~----I~v~~~~~~~~~~~~~~~ 527 (1131)
.|..+=+ ++.++...... +. | .=|.-|.-+|.-|+.||++.|-+ |. |.|.+..
T Consensus 232 lCd~yy~~sPel~i~~~~a~~--~~-v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~----------- 296 (414)
T KOG0787|consen 232 LCDQYYLNSPELIIEGHNALS--FT-V-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK----------- 296 (414)
T ss_pred HHHHhccCCCeeEecCccccc--Cc-c-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec-----------
Confidence 8776643 34444332221 11 1 13568999999999999999832 22 4443321
Q ss_pred CCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC------C----C
Q 042553 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE------G----E 597 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~------~----~ 597 (1131)
+...+.|.|+|.|-||+.++.+++|.=-|.+.. . -
T Consensus 297 -----------------------------------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~pl 341 (414)
T KOG0787|consen 297 -----------------------------------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPL 341 (414)
T ss_pred -----------------------------------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcc
Confidence 112467889999999999999999995544321 1 1
Q ss_pred CCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 598 GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 598 ~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
.|.|-||.|||.-++-.||++.+.|-+ |-||-..+.+...
T Consensus 342 aGfG~GLPisrlYa~yf~Gdl~L~Sle--G~GTD~yI~Lk~l 381 (414)
T KOG0787|consen 342 AGFGFGLPISRLYARYFGGDLKLQSLE--GIGTDVYIYLKAL 381 (414)
T ss_pred cccccCCcHHHHHHHHhCCCeeEEeee--ccccceEEEeccC
Confidence 499999999999999999999999866 5799988887543
No 143
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.21 E-value=1.3e-05 Score=105.53 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=97.1
Q ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHH
Q 042553 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073 (1131)
Q Consensus 994 ~~~~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~ 1073 (1131)
..+.+++||++||++..+..+..+|...|+.+..+.++.+ +.. ..||++++|..||.+++.+.
T Consensus 532 ~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~-------------~~~d~il~~~~~~~~~~~~~ 594 (919)
T PRK11107 532 DCLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE-------------AHYDILLLGLPVTFREPLTM 594 (919)
T ss_pred cccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc-------------CCCCEEEecccCCCCCCHHH
Confidence 3467889999999999999999999999999999999888 222 26999999999998887766
Q ss_pred HHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
+......... ...++|+++..........+.+.|+++|+.||+...+|...+..
T Consensus 595 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~ 648 (919)
T PRK11107 595 LHERLAKAKS--MTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLE 648 (919)
T ss_pred HHHHHHhhhh--cCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHH
Confidence 5555443222 23568888888888888899999999999999999999988864
No 144
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.08 E-value=1.5e-05 Score=67.16 Aligned_cols=62 Identities=35% Similarity=0.448 Sum_probs=52.6
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSK 431 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlsk 431 (1131)
+..+++.++|||||||++|.++++.+.......+.....+..+..++.++..+++++++++|
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34578899999999999999999987665444566778889999999999999999999875
No 145
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.02 E-value=4.4e-06 Score=97.57 Aligned_cols=89 Identities=30% Similarity=0.458 Sum_probs=78.9
Q ss_pred CEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHH
Q 042553 1023 ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEA 1102 (1131)
Q Consensus 1023 ~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~ 1102 (1131)
++|.+|..|.+|++.+... ++|.+|+|++||+|||+++++++++.. .+++++|+...+...
T Consensus 13 ~~v~~a~~g~~~l~~~~~~-------------~~~~~lld~~m~~~~~~~~~~~lk~~~------~~~v~~t~~~~~~~~ 73 (435)
T COG3706 13 KEVATAKKGLIALAILLDH-------------KPDYKLLDVMMPGMDGFELCRRLKAEP------ATVVMVTALDDSAPR 73 (435)
T ss_pred hhhhhccchHHHHHHHhcC-------------CCCeEEeecccCCcCchhHHHHHhcCC------cceEEEEecCCCCcc
Confidence 4677799999999998864 799999999999999999999999864 238999999999999
Q ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1103 DKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1103 ~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
.+.+++|+++||+||++...+....+.+
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~r~~~l 101 (435)
T COG3706 74 VRGLKAGADDFLTKPVNDSQLFLRAKSL 101 (435)
T ss_pred hhHHhhhhhhhccCCCChHHHHHhhhhh
Confidence 9999999999999999999888777643
No 146
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.81 E-value=0.00011 Score=84.28 Aligned_cols=83 Identities=24% Similarity=0.254 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEE
Q 042553 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT 568 (1131)
Q Consensus 489 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (1131)
.+.+++.|||.||+++.. ..|.|.+... ....
T Consensus 22 ~~~~~l~eLi~Na~dA~a-~~I~i~~~~~-----------------------------------------------~~~~ 53 (312)
T TIGR00585 22 RPASVVKELVENSLDAGA-TRIDVEIEEG-----------------------------------------------GLKL 53 (312)
T ss_pred hHHHHHHHHHHHHHHCCC-CEEEEEEEeC-----------------------------------------------CEEE
Confidence 688999999999999864 4566654210 1246
Q ss_pred EEEEecCCCCCcchHhhhccCCeecCCC----------CCCcccchHHHHHHHHHhCCEEEEEeec
Q 042553 569 FEVDDTGKGIPKEKRKTVFENYVQVKEG----------EGGTGLGLGIVQSLVRLMGGDIEIVDKE 624 (1131)
Q Consensus 569 i~V~DtG~GI~~e~~~~IFe~F~q~~~~----------~~GtGLGLsIvk~Lv~~~gG~I~v~s~~ 624 (1131)
|.|.|+|.||++++++++|++|++.+.. .|--|.||+=...+ +.+++.++.
T Consensus 54 i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~ 114 (312)
T TIGR00585 54 IEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKT 114 (312)
T ss_pred EEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEee
Confidence 9999999999999999999999986532 23347777644433 368888874
No 147
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.43 E-value=0.0011 Score=65.21 Aligned_cols=93 Identities=26% Similarity=0.326 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHHHhhccCC----CeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhcc
Q 042553 486 DRVKLKQILSNLLSNAVKFTSE----GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRD 561 (1131)
Q Consensus 486 D~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1131)
+...+.-++.-++.||++|... +.|.|++...
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~-------------------------------------------- 63 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVD-------------------------------------------- 63 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEc--------------------------------------------
Confidence 3457889999999999999875 3566654321
Q ss_pred CCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEE
Q 042553 562 ENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFN 635 (1131)
Q Consensus 562 ~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~ 635 (1131)
...+.++|.|.|.|+++.....-... ........|+||.|++++++.+ .+ + . +.|+++++.
T Consensus 64 --~~~l~i~v~D~G~~~d~~~~~~~~~~---~~~~~~~~G~Gl~li~~l~D~~----~~-~-~--~~gn~v~l~ 124 (125)
T PF13581_consen 64 --PDRLRISVRDNGPGFDPEQLPQPDPW---EPDSLREGGRGLFLIRSLMDEV----DY-R-E--DGGNTVTLR 124 (125)
T ss_pred --CCEEEEEEEECCCCCChhhccCcccc---cCCCCCCCCcCHHHHHHHHcEE----EE-E-C--CCeEEEEEE
Confidence 12589999999999988765433211 0123357799999999999977 34 2 2 248888763
No 148
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.00072 Score=77.58 Aligned_cols=107 Identities=21% Similarity=0.421 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhccCC-C---eEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccC
Q 042553 487 RVKLKQILSNLLSNAVKFTSE-G---HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562 (1131)
Q Consensus 487 ~~rL~QIL~NLL~NAiKfT~~-G---~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1131)
...|.|++.-|+.|++..|++ | .|.|.+...
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~--------------------------------------------- 68 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI--------------------------------------------- 68 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec---------------------------------------------
Confidence 346999999999999999986 4 344444221
Q ss_pred CCcEEEEEEEecCCCCCcchHhhhccCCeec------CCCCCCcccchHHHHHHHHHhCCE-EEEEeecCCCccEEEEEE
Q 042553 563 NAMEFTFEVDDTGKGIPKEKRKTVFENYVQV------KEGEGGTGLGLGIVQSLVRLMGGD-IEIVDKENGERGTCFRFN 635 (1131)
Q Consensus 563 ~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~------~~~~~GtGLGLsIvk~Lv~~~gG~-I~v~s~~~gg~Gt~f~~~ 635 (1131)
...++.+.|+|||+|||+++++++|-.+.-. ..++|--|||.+-|--..++.-|+ +.|.|+.. +.++...+.
T Consensus 69 ~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~-~s~~~~~~~ 147 (538)
T COG1389 69 GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTG-DSGTAYEYE 147 (538)
T ss_pred CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCC-CCcceEEEE
Confidence 1236789999999999999999999876433 234566799999999999998775 67777654 356777776
Q ss_pred Eecc
Q 042553 636 VFLA 639 (1131)
Q Consensus 636 l~l~ 639 (1131)
|...
T Consensus 148 l~id 151 (538)
T COG1389 148 LKID 151 (538)
T ss_pred EEec
Confidence 6543
No 149
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.95 E-value=0.007 Score=61.34 Aligned_cols=88 Identities=25% Similarity=0.346 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHHHhhccCC-----CeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhc
Q 042553 486 DRVKLKQILSNLLSNAVKFTSE-----GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQR 560 (1131)
Q Consensus 486 D~~rL~QIL~NLL~NAiKfT~~-----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1131)
|-.+++-++.-++.||++|..+ |.|.|.+....
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~------------------------------------------ 74 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD------------------------------------------ 74 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcC------------------------------------------
Confidence 6678999999999999999865 77777764321
Q ss_pred cCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHHHHHHhCCEEEEEeecC
Q 042553 561 DENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKEN 625 (1131)
Q Consensus 561 ~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~ 625 (1131)
..+.+.|.|.|+||. ..+..+++.+........-|+||.+++++++ ++.+.++++
T Consensus 75 ----~~~~i~i~D~G~~~~--~~~~~~~~~~~~~~~~~~~G~Gl~l~~~~~D----~~~~~~~~~ 129 (146)
T COG2172 75 ----GKLEIRIWDQGPGIE--DLEESLGPGDTTAEGLQEGGLGLFLAKRLMD----EFSYERSED 129 (146)
T ss_pred ----CeEEEEEEeCCCCCC--CHHHhcCCCCCCCcccccccccHHHHhhhhe----eEEEEeccC
Confidence 248899999997764 4666777764443333345999999999875 566664443
No 150
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.74 E-value=0.0016 Score=84.50 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=45.2
Q ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCC
Q 042553 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEM 1065 (1131)
Q Consensus 994 ~~~~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~M 1065 (1131)
..+.+.+||||||++.++.++..+|++.|++|..|.++.. . ..||+||||++|
T Consensus 685 ~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~~------~-------------~~~Dlvl~D~~~ 737 (894)
T PRK10618 685 KLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDERLI------S-------------QEYDIFLTDNPS 737 (894)
T ss_pred ccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcccc------C-------------CCCCEEEECCCC
Confidence 4467889999999999999999999999999999886421 1 369999999994
No 151
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.64 E-value=0.011 Score=45.69 Aligned_cols=54 Identities=39% Similarity=0.607 Sum_probs=47.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP 1066 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP 1066 (1131)
++++++|++..+..+...+...|+.+..+.++.++...+... .+|++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE-------------KPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc-------------CCCEEEEeccCC
Confidence 689999999999999999999999999999999999888652 689999998765
No 152
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.60 E-value=0.014 Score=56.09 Aligned_cols=105 Identities=29% Similarity=0.319 Sum_probs=74.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCcc-EEEEcCCCCCCCHHHHHHHHh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYD-YILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~D-lILmDi~MP~mdG~e~~r~IR 1078 (1131)
||||+|||..-+.-+..+|+=.|+.+..++..+- ...... ..++ ++++...++ ...+.++.+-
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~-------------~~~~~~~v~~g~~~--~~~~~l~~l~ 64 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS-------------SPWEACAVILGSCS--KLAELLKELL 64 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh-------------cCCcEEEEEecCch--hHHHHHHHHH
Confidence 6999999999999999999999999988886544 222221 1344 334444444 4455666665
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
+. .+++|++.+......... ..+-+-|..|++..+|.++|++
T Consensus 65 ~~----~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~ 106 (109)
T PF06490_consen 65 KW----APHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHR 106 (109)
T ss_pred hh----CCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHH
Confidence 43 468999999887665121 1166779999999999999986
No 153
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.22 E-value=0.015 Score=72.72 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEE
Q 042553 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT 568 (1131)
Q Consensus 489 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (1131)
++..|+..||.||+... ...|.|.+.. .....
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~~-----------------------------------------------~g~~~ 53 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIEE-----------------------------------------------GGLKL 53 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEEe-----------------------------------------------CCeEE
Confidence 57789999999999964 4456665521 11357
Q ss_pred EEEEecCCCCCcchHhhhccCCeecCCC----------CCCcccchHHHHHHHHHhCCEEEEEeecCC-CccEEEE
Q 042553 569 FEVDDTGKGIPKEKRKTVFENYVQVKEG----------EGGTGLGLGIVQSLVRLMGGDIEIVDKENG-ERGTCFR 633 (1131)
Q Consensus 569 i~V~DtG~GI~~e~~~~IFe~F~q~~~~----------~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~g-g~Gt~f~ 633 (1131)
|+|.|+|.||++++++.+|.++++.+-. .|=-|.||+=.-.+ ..++|.++..+ +.|....
T Consensus 54 i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~~~~~~~~~~~ 124 (617)
T PRK00095 54 IRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRTADAAEGWQIV 124 (617)
T ss_pred EEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEecCCCCceEEEE
Confidence 9999999999999999999998765421 12246666644443 47888877542 2344443
No 154
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.20 E-value=0.13 Score=50.56 Aligned_cols=111 Identities=20% Similarity=0.130 Sum_probs=80.3
Q ss_pred EEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH--H
Q 042553 1001 ILVA----DDSMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG--Y 1071 (1131)
Q Consensus 1001 ILvv----dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG--~ 1071 (1131)
|++. |.|.+=..++..+|+..||+|... ...++.++.+.+. .+|+|.+-..|+..-. -
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~-------------~~d~V~iS~~~~~~~~~~~ 68 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQE-------------DVDVIGLSSLSGGHMTLFP 68 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEcccchhhHHHHH
Confidence 5555 666777788999999999998864 3467777877763 7999999888764322 3
Q ss_pred HHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1072 EATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1072 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
++++++|+. .+.-+.|++-+....++..+..++|+|+|+..--+.++...-|+
T Consensus 69 ~~~~~L~~~----~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 69 EVIELLREL----GAGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred HHHHHHHhc----CCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 345555553 22234455666666777888999999999999899888887765
No 155
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=95.60 E-value=0.013 Score=58.85 Aligned_cols=63 Identities=27% Similarity=0.546 Sum_probs=41.8
Q ss_pred EEEEEecCCCCCcchHhhhccCCeecCC------CCCCcccc--hHHHHHHHHHhCCEEEEEeecCCCccEEEEEEE
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYVQVKE------GEGGTGLG--LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~q~~~------~~~GtGLG--LsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l 636 (1131)
.|.|.|+|.||+.+++.++|...+..+. ..|--|+| +|+. .++..+.|.|+..+. ...++|..
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~-~~~~~~~~ 105 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGE-SFTYTIDY 105 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTS-SSEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCC-CcEEEEEE
Confidence 6899999999999999998865544322 23456777 4443 468999999987653 44666654
No 156
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.55 E-value=0.44 Score=47.81 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=86.3
Q ss_pred CCCeEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC
Q 042553 997 RGKKILVA----DDSMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN 1069 (1131)
Q Consensus 997 ~~~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md 1069 (1131)
++.+||+. |.|..-..++..+|+..||+|... ...++.++.+.+. .+|+|.+-+.|....
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~-------------~~d~V~lS~~~~~~~ 68 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET-------------DADAILVSSLYGHGE 68 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEcCccccCH
Confidence 34578888 888888899999999999999864 3567777777663 799999999887432
Q ss_pred --HHHHHHHHhhhhccCCCCccEEEEcccC------CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1070 --GYEATRKIREEEKRNQVHIPIIALTAHI------SGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1070 --G~e~~r~IR~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
--++++++|+.. ..+++|+ +.+.. ..++..++.+.|++.+.....+.++....|++.
T Consensus 69 ~~~~~~~~~L~~~~---~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 69 IDCRGLREKCIEAG---LGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred HHHHHHHHHHHhcC---CCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHH
Confidence 345566666542 2245444 44432 345667888999999999889999999888764
No 157
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.60 E-value=1.7 Score=43.36 Aligned_cols=108 Identities=11% Similarity=0.034 Sum_probs=74.3
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-CCH-HHHHHHHhh
Q 042553 1005 DDSMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-MNG-YEATRKIRE 1079 (1131)
Q Consensus 1005 dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-mdG-~e~~r~IR~ 1079 (1131)
|-|..-..++..+|+..||+|... .+.++.++.+.+. .+|+|.+-..|.. +.. -++++.+|+
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~-------------~adii~iSsl~~~~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEA-------------DVHVVGVSSLAGGHLTLVPALRKELDK 79 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEcCchhhhHHHHHHHHHHHHh
Confidence 445555678999999999998863 4678888888763 6899988765532 211 233445554
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
.. ...++ |++-+....++.....++|+|+|+..=-+..+....+.+
T Consensus 80 ~g---~~~i~-vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 80 LG---RPDIL-VVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred cC---CCCCE-EEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 32 11344 445555566778889999999999988888888777654
No 158
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=92.48 E-value=1.4 Score=42.73 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=65.3
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC--CCHHHHHHHHhh
Q 042553 1005 DDSMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI--MNGYEATRKIRE 1079 (1131)
Q Consensus 1005 dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~--mdG~e~~r~IR~ 1079 (1131)
|.+.+-..++..+|+..||+|... ...++.++.+.+. .||+|.+-+.|.. .+..++++.+|+
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~-------------~pdvV~iS~~~~~~~~~~~~~i~~l~~ 76 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEE-------------DADAIGLSGLLTTHMTLMKEVIEELKE 76 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEeccccccHHHHHHHHHHHHH
Confidence 666677789999999999998653 3456777777653 7999999887654 234566677776
Q ss_pred hhccCCC-CccEEEEcccCCHHHHHHHHHcCCCEEEEC
Q 042553 1080 EEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGK 1116 (1131)
Q Consensus 1080 ~~~~~~~-~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1116 (1131)
. .+ .++ |++.+.........+.+.|+|.|+..
T Consensus 77 ~----~~~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 77 A----GLDDIP-VLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred c----CCCCCe-EEEECCCCChhHHHHHHcCCeEEECC
Confidence 4 23 454 44555554444567889999888764
No 159
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=92.46 E-value=0.69 Score=43.60 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=33.1
Q ss_pred EEEEEeCHHHHHHHHHHHHHcCC-eeeecccHHHHHHHHH
Q 042553 705 VVLLIANEERRRIAQKFMENLGI-NVSAVSRWERLHSTLK 743 (1131)
Q Consensus 705 vll~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~l~~~l~ 743 (1131)
++++++++..+..+..+++..|+ .+..+.+..++...++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~ 40 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK 40 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc
Confidence 57888999999999999999999 8988888877665554
No 160
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=91.71 E-value=2.5 Score=52.66 Aligned_cols=83 Identities=11% Similarity=0.221 Sum_probs=49.0
Q ss_pred CCCCCchhhhhhhcC--CCCc--ccccc-ccccccCceEEEeeeec-CC--CceEEecccccccccccceee--ecCcEE
Q 042553 149 SSVSTSTWFLKALNS--TDGL--GSLGT-GWSKARDALFLNTAGIN-GT--RGAVSLGFPVKPITNLFAGIN--LYGGRL 218 (1131)
Q Consensus 149 ~~~~~~~~~~~~~~~--~~~~--~~~~~-~w~~~~~~~~~~~~~~~-~~--~g~~~~g~~~~~i~~~~~~~~--~~~~~~ 218 (1131)
-++.+++||+.+... ..+. ++.-. --...+..++..++.+. ++ .|++.+.+..+.+.+.+.... ..++.+
T Consensus 200 ~d~~~r~WY~~a~~~~~~~~~~~~~~~~~~d~~tg~~vit~s~pv~~~g~~~GVv~~di~l~~l~~~l~~~~~~~~~g~~ 279 (570)
T PRK15426 200 YQYVTQPWFIGQSQRRNPGRGVRWFTSQPDDASNTEPQVTASVPVDAGNYWYGVLAMDIPVRSLQQFLRNAIDKDLDGEY 279 (570)
T ss_pred CCcccChHHHhhhhhcCCCCCeeEecCCcccccCCCeEEEEEEEEccCCeEEEEEEEEecHHHHHHHHHHhhccCCCcEE
Confidence 356778899888642 2110 01000 00011223333444442 21 377788888888988887542 466788
Q ss_pred EEEecCceEEEec
Q 042553 219 SIATNDGKVLVQG 231 (1131)
Q Consensus 219 ~~~~~~g~~l~~~ 231 (1131)
++.+.+|.+++.+
T Consensus 280 ~Lvd~~G~iia~~ 292 (570)
T PRK15426 280 QLYDSHLRLLTSS 292 (570)
T ss_pred EEEcCCCcEEEec
Confidence 9999999999975
No 161
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=91.69 E-value=0.67 Score=50.81 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=32.0
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLH 739 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~ 739 (1131)
++++++|++.....+..+|+..|+.|..+.+.++..
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~ 37 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEAL 37 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 588999999999999999999999999998876543
No 162
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=91.44 E-value=0.9 Score=44.12 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=69.7
Q ss_pred HHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC--CCHHHHHHHHhhhhccCCCCcc
Q 042553 1012 RVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI--MNGYEATRKIREEEKRNQVHIP 1089 (1131)
Q Consensus 1012 ~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~--mdG~e~~r~IR~~~~~~~~~ip 1089 (1131)
..+...|++.|++|..+.+-++|+..++.. ..++.|++|+. +. ....++++.||+. +..+|
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~------------~~i~avvi~~d-~~~~~~~~~ll~~i~~~----~~~iP 69 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESF------------TDIAAVVISWD-GEEEDEAQELLDKIRER----NFGIP 69 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCT------------TTEEEEEEECH-HHHHHHHHHHHHHHHHH----STT-E
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhC------------CCeeEEEEEcc-cccchhHHHHHHHHHHh----CCCCC
Confidence 346677888999999999999999999874 36899999986 21 1235678888875 45799
Q ss_pred EEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHH
Q 042553 1090 IIALTAHISGEEADKTIEAGMDVHLGKPLNRDHL 1123 (1131)
Q Consensus 1090 IIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L 1123 (1131)
|.+++.....+..-...-.-+++|+...-+-.++
T Consensus 70 VFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~f 103 (115)
T PF03709_consen 70 VFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEF 103 (115)
T ss_dssp EEEEESCCHHHCCCHHHHCCESEEEETTTTTHHH
T ss_pred EEEEecCCCcccCCHHHHhhccEEEEecCCCHHH
Confidence 9999987655555445556678898887554433
No 163
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=90.87 E-value=0.42 Score=60.03 Aligned_cols=86 Identities=24% Similarity=0.434 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHHHhhccCCC---eEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccC
Q 042553 486 DRVKLKQILSNLLSNAVKFTSEG---HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562 (1131)
Q Consensus 486 D~~rL~QIL~NLL~NAiKfT~~G---~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1131)
+...|..++.-||+||+.....| .|.|.+..
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---------------------------------------------- 67 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---------------------------------------------- 67 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEeC----------------------------------------------
Confidence 66789999999999999875554 45554421
Q ss_pred CCcEEEEEEEecCCCCCcchHhh--------hccCCeecC---C----CCCC-cccchHHHHHHHHHhCCEEEEEeec
Q 042553 563 NAMEFTFEVDDTGKGIPKEKRKT--------VFENYVQVK---E----GEGG-TGLGLGIVQSLVRLMGGDIEIVDKE 624 (1131)
Q Consensus 563 ~~~~l~i~V~DtG~GI~~e~~~~--------IFe~F~q~~---~----~~~G-tGLGLsIvk~Lv~~~gG~I~v~s~~ 624 (1131)
+. .|+|.|+|.|||.+..+. +|....... . ..+| .|.||+.|-.+-+. +.|++..
T Consensus 68 dg---~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~----l~V~s~r 138 (631)
T PRK05559 68 DG---SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR----LEVEVKR 138 (631)
T ss_pred CC---cEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheee----EEEEEEe
Confidence 11 589999999999998888 887643221 1 1234 69999998887654 4555443
No 164
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=89.66 E-value=0.42 Score=59.91 Aligned_cols=47 Identities=28% Similarity=0.522 Sum_probs=33.9
Q ss_pred EEEEEecCCCCCcch--------Hhhhc-cCCeecC--C----CCCC-cccchHHHHHHHHHh
Q 042553 568 TFEVDDTGKGIPKEK--------RKTVF-ENYVQVK--E----GEGG-TGLGLGIVQSLVRLM 614 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~--------~~~IF-e~F~q~~--~----~~~G-tGLGLsIvk~Lv~~~ 614 (1131)
.|+|.|+|.|||.+. ++-+| .+....+ . ..+| .|.||+.+..+-+.+
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~l 125 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKRV 125 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCeE
Confidence 489999999999988 78788 4433221 1 1234 699999998887743
No 165
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=89.45 E-value=0.58 Score=59.17 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHhhccCCC---eEEEEE
Q 042553 486 DRVKLKQILSNLLSNAVKFTSEG---HISVRA 514 (1131)
Q Consensus 486 D~~rL~QIL~NLL~NAiKfT~~G---~I~v~~ 514 (1131)
|+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i 58 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTI 58 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEE
Confidence 56679999999999999843334 455554
No 166
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=88.27 E-value=9.5 Score=38.12 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC--HHHHHHHHhhhh
Q 042553 1007 SMMLRRVAEINLRHLGATVEA---CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN--GYEATRKIREEE 1081 (1131)
Q Consensus 1007 ~~~~~~~l~~~L~~~g~~v~~---a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md--G~e~~r~IR~~~ 1081 (1131)
|..-..++..+|+..||+|.. ....++.++.+.+. .+|+|-+-..|-..- --++.+++|+..
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~-------------~adiVglS~l~~~~~~~~~~~~~~l~~~g 80 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET-------------KADAILVSSLYGHGEIDCKGLRQKCDEAG 80 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEecccccCHHHHHHHHHHHHHCC
Confidence 344557889999999999885 46778888888763 799999987775322 234455666542
Q ss_pred ccCCCCccEEEEcccC--CHHH----HHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1082 KRNQVHIPIIALTAHI--SGEE----ADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1082 ~~~~~~ipIIalTa~~--~~~~----~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
..-+.|++-+.. .+++ ..++.+.|++......-.++++.+.|++.
T Consensus 81 ----l~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~ 131 (134)
T TIGR01501 81 ----LEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKD 131 (134)
T ss_pred ----CCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHH
Confidence 222446566632 2222 34688999999999888999999888763
No 167
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=88.16 E-value=0.51 Score=59.25 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=25.0
Q ss_pred EEEEEecCCCCCcchHhhhccCCeecC
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYVQVK 594 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~q~~ 594 (1131)
.|.|.|+|+||++++++-.+.++.+.+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 489999999999999999999998864
No 168
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=87.82 E-value=12 Score=37.13 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-CCH-HHHHHHHhhhh
Q 042553 1007 SMMLRRVAEINLRHLGATVEA---CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-MNG-YEATRKIREEE 1081 (1131)
Q Consensus 1007 ~~~~~~~l~~~L~~~g~~v~~---a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-mdG-~e~~r~IR~~~ 1081 (1131)
|.+-..++..+|+..||+|.- ....++.++.+.+. .+|+|.+-..|.. |.. -++.+.+|+..
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~-------------~adiVglS~L~t~~~~~~~~~~~~l~~~g 78 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET-------------DADAILVSSLYGHGEIDCKGLREKCDEAG 78 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEeccccCCHHHHHHHHHHHHHCC
Confidence 445567889999999999885 45678888887763 6999999887754 323 35566666542
Q ss_pred ccCCCCccEEEEcccC--C----HHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1082 KRNQVHIPIIALTAHI--S----GEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1082 ~~~~~~ipIIalTa~~--~----~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
. .++||+ +-+.. . .++..+..++|++......-+++++...|+
T Consensus 79 l---~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 79 L---KDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred C---CCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 1 245544 44442 1 334566889999999998888888888775
No 169
>PRK05218 heat shock protein 90; Provisional
Probab=87.75 E-value=1.6 Score=54.84 Aligned_cols=55 Identities=16% Similarity=0.366 Sum_probs=36.9
Q ss_pred EEEEEecCCCCCcchHhhhccCCeec-----------C-----CCCCCcccchHHHHHHHHHhCCEEEEEeecCC
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYVQV-----------K-----EGEGGTGLGLGIVQSLVRLMGGDIEIVDKENG 626 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~q~-----------~-----~~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~g 626 (1131)
.|.|.|+|+||+++++..-|...-+. + .-.|-.|+|+.= +=+.+-++.|.|+..+
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S----~f~va~~v~V~Sr~~~ 144 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYS----AFMVADKVTVITRSAG 144 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchh----hhhccCEEEEEEcCCC
Confidence 48999999999999999877433221 0 112457888842 3334668999887643
No 170
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.64 E-value=1.2 Score=43.93 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhccCCCeEEEEEee
Q 042553 492 QILSNLLSNAVKFTSEGHISVRACV 516 (1131)
Q Consensus 492 QIL~NLL~NAiKfT~~G~I~v~~~~ 516 (1131)
-+..-||.||+||...|.|.|.+..
T Consensus 66 Yl~NELiENAVKfra~geIvieasl 90 (184)
T COG5381 66 YLANELIENAVKFRATGEIVIEASL 90 (184)
T ss_pred HHHHHHHHhhhcccCCCcEEEEEEe
Confidence 4667899999999999999887754
No 171
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=86.56 E-value=2 Score=49.50 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=56.6
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcc-cCCHH
Q 042553 1022 GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA-HISGE 1100 (1131)
Q Consensus 1022 g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa-~~~~~ 1100 (1131)
|.++..+.+..++-..+. .-.+|++|..| +-..++.... .+..++++++ ..+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~~-------~~~~~~~~~p---~~~~vv~v~~~~~~~~ 55 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA---------------RAPLVLVDADM-------AEACAAAGLP---RRRRVVLVGGGEPGGA 55 (322)
T ss_pred CCceEEccCchhhhhccc---------------cCCeEEECchh-------hhHHHhccCC---CCCCEEEEeCCCCCHH
Confidence 456667777666544443 35799999755 1112332211 1234665555 45678
Q ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1101 EADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1101 ~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
....++.+|+.+||.+|++..+|.+.+.++
T Consensus 56 ~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 56 LWRAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred HHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 888999999999999999999999998764
No 172
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=85.90 E-value=3.8 Score=39.35 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=79.2
Q ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHH
Q 042553 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073 (1131)
Q Consensus 994 ~~~~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~ 1073 (1131)
..+.|++++.||.|..........|..-+.+|+.-....+ +- ...||++|+.+-.+--.-..+
T Consensus 7 ~~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----lp-------------~~hYD~~Ll~vavtfr~n~tm 69 (140)
T COG4999 7 ACLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----LP-------------PAHYDMMLLGVAVTFRENLTM 69 (140)
T ss_pred hhhccceeEEecCccHHHHHHHHHHhcCCceEEecccccc----cC-------------hhhhceeeecccccccCCchH
Confidence 3567899999999999999999999999999887543222 21 136999999987775544433
Q ss_pred H--HHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Q 042553 1074 T--RKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127 (1131)
Q Consensus 1074 ~--r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I 1127 (1131)
- +..|+... .+--|+++-.++. -..++..+-|+-++|.||++...|+..+
T Consensus 70 ~~~~l~~Al~m---td~vilalPs~~q-v~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 70 QHERLAKALSM---TDFVILALPSHAQ-VNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred HHHHHHHHHhh---hcceEEecCcHHH-HhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 2 22233322 2345777765543 3455778899999999999999988743
No 173
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=83.75 E-value=3.6 Score=43.12 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=32.2
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHS 740 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~ 740 (1131)
..|.+|+|+...|..+..++++.|+++....+.+++..
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~ 42 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLA 42 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHh
Confidence 35778888888999999999999999999988877643
No 174
>PRK14083 HSP90 family protein; Provisional
Probab=83.34 E-value=1.4 Score=54.88 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEEEecCCCCCcchHhhhcc
Q 042553 568 TFEVDDTGKGIPKEKRKTVFE 588 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe 588 (1131)
.|.|.|+|+||+++++.+.|-
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~ 84 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLA 84 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHh
Confidence 689999999999999988763
No 175
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=83.04 E-value=12 Score=40.94 Aligned_cols=85 Identities=25% Similarity=0.228 Sum_probs=58.9
Q ss_pred HHHhCCCEEE-E-ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC---------C-CCHHHHHHHHhhhhccC
Q 042553 1017 NLRHLGATVE-A-CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP---------I-MNGYEATRKIREEEKRN 1084 (1131)
Q Consensus 1017 ~L~~~g~~v~-~-a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP---------~-mdG~e~~r~IR~~~~~~ 1084 (1131)
.|-+.|+.|. . +.|...|-.+..- .+++| || + .+ .++++.|++.
T Consensus 118 ~L~~~Gf~vlpyc~dd~~~ar~l~~~--------------G~~~v-----mPlg~pIGsg~Gi~~-~~~I~~I~e~---- 173 (248)
T cd04728 118 ILVKEGFTVLPYCTDDPVLAKRLEDA--------------GCAAV-----MPLGSPIGSGQGLLN-PYNLRIIIER---- 173 (248)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHc--------------CCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh----
Confidence 3445699877 4 4566666555543 46666 66 1 23 7888888874
Q ss_pred CCCccEEEEcccCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHH
Q 042553 1085 QVHIPIIALTAHISGEEADKTIEAGMDVHL-----GKPLNRDHLMEA 1126 (1131)
Q Consensus 1085 ~~~ipIIalTa~~~~~~~~~~l~aG~d~yL-----~KP~~~~~L~~~ 1126 (1131)
..+|||+=.+-..+++..++++.|+|+.+ +|.-++..+..+
T Consensus 174 -~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~a 219 (248)
T cd04728 174 -ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARA 219 (248)
T ss_pred -CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHH
Confidence 25899988888899999999999999995 453444444433
No 176
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=82.24 E-value=13 Score=40.18 Aligned_cols=100 Identities=18% Similarity=0.137 Sum_probs=68.3
Q ss_pred CeEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCC-CH
Q 042553 999 KKILVA----DDSMMLRRVAEINLRHLGATVEACE---NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM-NG 1070 (1131)
Q Consensus 999 ~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~m-dG 1070 (1131)
.+|++. |.|.+=..++..+|+..||+|.... ..++.++.+.+. .+|+|.+-+.|+.. ..
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~-------------~~~~V~lS~~~~~~~~~ 155 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEH-------------KADIIGLSGLLVPSLDE 155 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEccchhccHHH
Confidence 468877 7788888899999999999998643 467777777763 79999999988742 22
Q ss_pred -HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHH---HHHcCCCEEEE
Q 042553 1071 -YEATRKIREEEKRNQVHIPIIALTAHISGEEADK---TIEAGMDVHLG 1115 (1131)
Q Consensus 1071 -~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~---~l~aG~d~yL~ 1115 (1131)
-++++++|+. ..+++|++=-+-...+.... +-..|+|.|-.
T Consensus 156 ~~~~i~~L~~~----~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~ 200 (213)
T cd02069 156 MVEVAEEMNRR----GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVK 200 (213)
T ss_pred HHHHHHHHHhc----CCCCeEEEEChhcCHHHHhhhhccccCCCceEec
Confidence 3456666654 33667665544444333322 24579998865
No 177
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=82.20 E-value=2.1 Score=54.03 Aligned_cols=80 Identities=24% Similarity=0.445 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHHHhhccCCC---eEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccC
Q 042553 486 DRVKLKQILSNLLSNAVKFTSEG---HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDE 562 (1131)
Q Consensus 486 D~~rL~QIL~NLL~NAiKfT~~G---~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1131)
|+.-|.+++.-||+||+.-...| .|.|.+..
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---------------------------------------------- 67 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---------------------------------------------- 67 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC----------------------------------------------
Confidence 66789999999999999844445 56655421
Q ss_pred CCcEEEEEEEecCCCCCcchHh--------hhccCCeec---CC----CCCC-cccchHHHHHHHHHh
Q 042553 563 NAMEFTFEVDDTGKGIPKEKRK--------TVFENYVQV---KE----GEGG-TGLGLGIVQSLVRLM 614 (1131)
Q Consensus 563 ~~~~l~i~V~DtG~GI~~e~~~--------~IFe~F~q~---~~----~~~G-tGLGLsIvk~Lv~~~ 614 (1131)
++ .|+|.|+|.|||.+..+ -||--.... +. -.+| -|.||+.+..+-+.+
T Consensus 68 ~g---~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~~~ 132 (638)
T PRK05644 68 DG---SITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSTWL 132 (638)
T ss_pred CC---cEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhheeceE
Confidence 11 58999999999987433 234322111 11 1233 699999888776644
No 178
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=82.17 E-value=17 Score=39.00 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=68.3
Q ss_pred CeEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCC--C
Q 042553 999 KKILVA----DDSMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM--N 1069 (1131)
Q Consensus 999 ~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~m--d 1069 (1131)
.+||+. |-|.+=..++..+|+..||+|... ...++.++.+.+. .||+|-+-+.|+.. +
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~-------------~~d~v~lS~~~~~~~~~ 149 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEH-------------KPDILGLSALMTTTMGG 149 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEeccccccHHH
Confidence 478887 778887889999999999998753 3567777777763 79999999987754 2
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
-.++++.+|+... ..+++|++=-.... .+ -+-..|+|.|-.
T Consensus 150 ~~~~i~~lr~~~~--~~~~~i~vGG~~~~-~~--~~~~~GaD~~~~ 190 (201)
T cd02070 150 MKEVIEALKEAGL--RDKVKVMVGGAPVN-QE--FADEIGADGYAE 190 (201)
T ss_pred HHHHHHHHHHCCC--CcCCeEEEECCcCC-HH--HHHHcCCcEEEC
Confidence 3455666766421 12566665443333 33 466779998865
No 179
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=81.98 E-value=11 Score=36.40 Aligned_cols=93 Identities=18% Similarity=0.254 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcC-CCCCCC-HHHHHHHHhhhh
Q 042553 1007 SMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDC-EMPIMN-GYEATRKIREEE 1081 (1131)
Q Consensus 1007 ~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi-~MP~md-G~e~~r~IR~~~ 1081 (1131)
++.-...+..+|++.|++|... .+.++..+.+.+. .||+|.+.+ ..+... ..++++.+|+.
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~-------------~pd~V~iS~~~~~~~~~~~~l~~~~k~~- 78 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAE-------------RPDVVGISVSMTPNLPEAKRLARAIKER- 78 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHT-------------TCSEEEEEESSSTHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcC-------------CCcEEEEEccCcCcHHHHHHHHHHHHhc-
Confidence 3566788999999999999866 3456667777663 799999998 444432 34555555543
Q ss_pred ccCCCCccEEEEcccCCHHHHHHHHH--cCCCEEEECC
Q 042553 1082 KRNQVHIPIIALTAHISGEEADKTIE--AGMDVHLGKP 1117 (1131)
Q Consensus 1082 ~~~~~~ipIIalTa~~~~~~~~~~l~--aG~d~yL~KP 1117 (1131)
.++++|++=-.+.+ ..-+.+++ .|+|..+.-.
T Consensus 79 ---~p~~~iv~GG~~~t-~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 79 ---NPNIPIVVGGPHAT-ADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp ---CTTSEEEEEESSSG-HHHHHHHHHHHTSEEEEEET
T ss_pred ---CCCCEEEEECCchh-cChHHHhccCcCcceecCCC
Confidence 45666665544433 33345554 7888776543
No 180
>PRK00208 thiG thiazole synthase; Reviewed
Probab=81.88 E-value=14 Score=40.47 Aligned_cols=86 Identities=22% Similarity=0.185 Sum_probs=59.5
Q ss_pred HHHHhCCCEEE-E-ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC---------C-CCHHHHHHHHhhhhcc
Q 042553 1016 INLRHLGATVE-A-CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP---------I-MNGYEATRKIREEEKR 1083 (1131)
Q Consensus 1016 ~~L~~~g~~v~-~-a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP---------~-mdG~e~~r~IR~~~~~ 1083 (1131)
+.|-+.|+.|. . +.|..+|-.+..- .+|+| || + .+ .+.++.|++.
T Consensus 117 ~~L~~~Gf~vlpyc~~d~~~ak~l~~~--------------G~~~v-----mPlg~pIGsg~gi~~-~~~i~~i~e~--- 173 (250)
T PRK00208 117 EILVKEGFVVLPYCTDDPVLAKRLEEA--------------GCAAV-----MPLGAPIGSGLGLLN-PYNLRIIIEQ--- 173 (250)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHc--------------CCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh---
Confidence 34446699877 4 4566666555543 46766 66 1 23 6788888874
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHH
Q 042553 1084 NQVHIPIIALTAHISGEEADKTIEAGMDVHL-----GKPLNRDHLMEA 1126 (1131)
Q Consensus 1084 ~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL-----~KP~~~~~L~~~ 1126 (1131)
..+|||+=.+-..+++..++++.|+|+.+ +|.-++..+..+
T Consensus 174 --~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~a 219 (250)
T PRK00208 174 --ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARA 219 (250)
T ss_pred --cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHH
Confidence 25899988888899999999999999995 453444444443
No 181
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=80.43 E-value=45 Score=33.65 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=77.0
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH
Q 042553 998 GKKILVA----DDSMMLRRVAEINLRHLGATVEA---CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG 1070 (1131)
Q Consensus 998 ~~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~---a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG 1070 (1131)
..|||++ |-|..-.+++...|+..|++|.. ...++|+++..-+. ..|+|.+..- .-..
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~-------------dv~vIgvSsl--~g~h 76 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE-------------DVDVIGVSSL--DGGH 76 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc-------------CCCEEEEEec--cchH
Confidence 3456554 77777788999999999999985 67889999887542 5788877532 2223
Q ss_pred HHHHHHHhhhhccCCC-CccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~-~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I 1127 (1131)
.+++..+++.-+..+. ++. +++-+.-.+++..+..+.|++.++.--....+...-+
T Consensus 77 ~~l~~~lve~lre~G~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v 133 (143)
T COG2185 77 LTLVPGLVEALREAGVEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDL 133 (143)
T ss_pred HHHHHHHHHHHHHhCCcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHH
Confidence 4555555443332233 332 4666777778888888999999998666666655444
No 182
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=79.67 E-value=9 Score=46.13 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=34.7
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++|+...|..+...|+..|+.|..+.++.+....+
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i 44 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEAL 44 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH
Confidence 4689999999999999999999999999999988655444
No 183
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.64 E-value=10 Score=42.28 Aligned_cols=111 Identities=16% Similarity=0.226 Sum_probs=64.5
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHHhhhcCCCccccCCCCCCCCCCcCCCCccCCccccccccc
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLSAM 783 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1131)
++++|+++.....++..+|.+.|-.+..++...+....|+..
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~-------------------------------------- 43 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF-------------------------------------- 43 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc--------------------------------------
Confidence 467777887788899999998885555555554444333322
Q ss_pred ccchhhhccccccCCCceEEEEecCCCcchHHHHHHHHHHhhhcccceeEEEccCCCccccccCCCccccCCCCCccccc
Q 042553 784 EGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLK 863 (1131)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~il~vid~~~~~~~~~~~~~~~~~~~~~~~~~vv~l~~~~~~~i~~~~l~~~~~~~~~~~l~k 863 (1131)
.|+++++-|..+.....++...+..+ ....++++++.+...+.+..++ ...+++.|
T Consensus 44 --------------kpDLifldI~mp~~ngiefaeQvr~i----~~~v~iifIssh~eya~dsf~~------n~~dYl~K 99 (361)
T COG3947 44 --------------KPDLIFLDIVMPYMNGIEFAEQVRDI----ESAVPIIFISSHAEYADDSFGM------NLDDYLPK 99 (361)
T ss_pred --------------CCCEEEEEeecCCccHHHHHHHHHHh----hccCcEEEEecchhhhhhhccc------chHhhccC
Confidence 23333333333222223333333222 2456677776665544433222 12678999
Q ss_pred cccchhHHHHHhh
Q 042553 864 PFHGSRLYKVIKL 876 (1131)
Q Consensus 864 P~~~s~l~~~l~~ 876 (1131)
|+.+.+|-.++..
T Consensus 100 Pvt~ekLnraIdr 112 (361)
T COG3947 100 PVTPEKLNRAIDR 112 (361)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999988864
No 184
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=79.42 E-value=8.3 Score=48.94 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=65.1
Q ss_pred eEEEEeCCH-HH-----HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHH
Q 042553 1000 KILVADDSM-ML-----RRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073 (1131)
Q Consensus 1000 ~ILvvdD~~-~~-----~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~ 1073 (1131)
+|++|+++- .+ .+.+...|++.|+.|..+.+..+++..++.. ...++|++|++-. ..++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~---~~~~ 66 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN------------PRICGVIFDWDEY---SLDL 66 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc------------cceeEEEEecccc---hHHH
Confidence 467776663 11 3456677888999999999999999998853 3688999995332 3558
Q ss_pred HHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++.||+. +..+||+++.......+.-...-.-.++|+.
T Consensus 67 ~~~~~~~----~~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (713)
T PRK15399 67 CSDINQL----NEYLPLYAFINTHSTMDVSVQDMRMALWFFE 104 (713)
T ss_pred HHHHHHh----CCCCCEEEEcCccccccCChhHhhhcceeee
Confidence 8888875 4579999997754333222222223445554
No 185
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=73.82 E-value=12 Score=47.50 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=57.3
Q ss_pred eEEEEeCCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHH
Q 042553 1000 KILVADDSM-M-----LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073 (1131)
Q Consensus 1000 ~ILvvdD~~-~-----~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~ 1073 (1131)
+||+++++. . -.+.+...|++.|++|..+.+..+++..++.. ...++|++|++- -..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~---~~~~~ 66 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN------------ARLCGVIFDWDK---YNLEL 66 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc------------cceeEEEEecch---hhHHH
Confidence 466665552 1 13456678889999999999999999998853 368899998532 12457
Q ss_pred HHHHhhhhccCCCCccEEEEcccC
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHI 1097 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~ 1097 (1131)
++.||+. +..+||+++....
T Consensus 67 ~~~~~~~----~~~~Pv~~~~~~~ 86 (714)
T PRK15400 67 CEEISKM----NENLPLYAFANTY 86 (714)
T ss_pred HHHHHHh----CCCCCEEEEcccc
Confidence 8888865 4579999997754
No 186
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=70.43 E-value=60 Score=34.62 Aligned_cols=89 Identities=25% Similarity=0.271 Sum_probs=60.0
Q ss_pred hCCCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCC--------CHHHHHHHHhhhhccCCCCccE
Q 042553 1020 HLGATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM--------NGYEATRKIREEEKRNQVHIPI 1090 (1131)
Q Consensus 1020 ~~g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~m--------dG~e~~r~IR~~~~~~~~~ipI 1090 (1131)
..+..+ ..+.+..++.+.... ..|+|.+.--.|.. .|++.++++++.- .++||
T Consensus 102 ~~~~~~g~~~~t~~e~~~a~~~--------------gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~v 163 (212)
T PRK00043 102 GPDAIIGLSTHTLEEAAAALAA--------------GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV----GDIPI 163 (212)
T ss_pred CCCCEEEEeCCCHHHHHHHhHc--------------CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----CCCCE
Confidence 344443 345666777777654 58999887555543 4688899988652 24899
Q ss_pred EEEcccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHH
Q 042553 1091 IALTAHISGEEADKTIEAGMDVHLG-----KPLNRDHLMEAI 1127 (1131)
Q Consensus 1091 IalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I 1127 (1131)
++..+- ..+....++++|++++.. +.-++.+....+
T Consensus 164 ~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l 204 (212)
T PRK00043 164 VAIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARAL 204 (212)
T ss_pred EEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHH
Confidence 988776 578888999999999974 444554444433
No 187
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=69.33 E-value=39 Score=43.37 Aligned_cols=107 Identities=12% Similarity=0.025 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCC--CHHHHHHHHhhh
Q 042553 1006 DSMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM--NGYEATRKIREE 1080 (1131)
Q Consensus 1006 D~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~m--dG~e~~r~IR~~ 1080 (1131)
.+..-...+..+|+..|++|..- .+.+++++.+.+. .+|+|.+-..+... ..-++++.||+.
T Consensus 594 ~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~-------------~a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 594 GHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEN-------------DVHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred chhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHc-------------CCCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 34444568889999999999643 4578888888763 68888886555432 234667777765
Q ss_pred hccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1081 EKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1081 ~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
. ..+++ |++.+...+++...+.++|+|+|+..=.+..+.+..+.+
T Consensus 661 G---~~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~ 705 (714)
T PRK09426 661 G---REDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLE 705 (714)
T ss_pred C---CCCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHH
Confidence 2 11343 345555345556678899999999988888887777654
No 188
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=68.39 E-value=18 Score=47.89 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=33.7
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHS 740 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~ 740 (1131)
+.++++++|++..+..+...|+.+|+.+..+.++.+...
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~ 728 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALE 728 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHH
Confidence 457999999999999999999999999998888776543
No 189
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=66.45 E-value=1.1e+02 Score=33.94 Aligned_cols=95 Identities=26% Similarity=0.241 Sum_probs=68.0
Q ss_pred HHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH-----HHHHHHHhhhhccCCC
Q 042553 1014 AEINLRHLGATVEAC--ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG-----YEATRKIREEEKRNQV 1086 (1131)
Q Consensus 1014 l~~~L~~~g~~v~~a--~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG-----~e~~r~IR~~~~~~~~ 1086 (1131)
..+.|-+.||.|... .|.--|-++..-+ ...+|=+--|.-.| -..++.|++. +
T Consensus 129 Aae~Lv~eGF~VlPY~~~D~v~a~rLed~G---------------c~aVMPlgsPIGSg~Gl~n~~~l~~i~e~-----~ 188 (267)
T CHL00162 129 AAEFLVKKGFTVLPYINADPMLAKHLEDIG---------------CATVMPLGSPIGSGQGLQNLLNLQIIIEN-----A 188 (267)
T ss_pred HHHHHHHCCCEEeecCCCCHHHHHHHHHcC---------------CeEEeeccCcccCCCCCCCHHHHHHHHHc-----C
Confidence 445666889998764 4444444444332 24788888887665 3457778764 3
Q ss_pred CccEEEEcccCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHH
Q 042553 1087 HIPIIALTAHISGEEADKTIEAGMDVHL-----GKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1087 ~ipIIalTa~~~~~~~~~~l~aG~d~yL-----~KP~~~~~L~~~I~ 1128 (1131)
.+|||+=.+-..+++..++++.|+|+.+ .|--++.++..+++
T Consensus 189 ~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~ 235 (267)
T CHL00162 189 KIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMK 235 (267)
T ss_pred CCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHH
Confidence 6899998888999999999999999984 56677777766654
No 190
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=66.19 E-value=67 Score=34.77 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=55.8
Q ss_pred HHHHh-CCCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC-------CCCCCHHHHHHHHhhhhccCCC
Q 042553 1016 INLRH-LGATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE-------MPIMNGYEATRKIREEEKRNQV 1086 (1131)
Q Consensus 1016 ~~L~~-~g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~-------MP~mdG~e~~r~IR~~~~~~~~ 1086 (1131)
...++ .+..+ ..+.+.+++..+... .+|+|.+... .+...++++++++|+. .
T Consensus 112 ~~~~~~~~i~vi~~v~t~ee~~~a~~~--------------G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~-----~ 172 (221)
T PRK01130 112 KRIKEYPGQLLMADCSTLEEGLAAQKL--------------GFDFIGTTLSGYTEETKKPEEPDFALLKELLKA-----V 172 (221)
T ss_pred HHHHhCCCCeEEEeCCCHHHHHHHHHc--------------CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh-----C
Confidence 33444 56554 456788888665543 4787755321 1223357888999874 2
Q ss_pred CccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1087 HIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1087 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.+||++..+-.+.++..+++++|+|+++.
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 58999988888899999999999999854
No 191
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=65.16 E-value=4.1 Score=51.05 Aligned_cols=44 Identities=32% Similarity=0.622 Sum_probs=27.1
Q ss_pred EEEEEecCCCCCcchHh--------hhccCCeec---CC----CCCC-cccchHHHHHHH
Q 042553 568 TFEVDDTGKGIPKEKRK--------TVFENYVQV---KE----GEGG-TGLGLGIVQSLV 611 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~--------~IFe~F~q~---~~----~~~G-tGLGLsIvk~Lv 611 (1131)
.|+|.|+|.|||-+..+ -||...... +. ..+| -|.||+.+-.+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 58999999999976533 233322111 11 1233 699999877764
No 192
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=64.99 E-value=1.6e+02 Score=33.03 Aligned_cols=108 Identities=12% Similarity=0.092 Sum_probs=68.4
Q ss_pred EEEeC-CHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEc---CCCCCCCHHHHHHH
Q 042553 1002 LVADD-SMMLRRVAEINLRHLGATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMD---CEMPIMNGYEATRK 1076 (1131)
Q Consensus 1002 LvvdD-~~~~~~~l~~~L~~~g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmD---i~MP~mdG~e~~r~ 1076 (1131)
|++.+ .+...+.+....+..|..+ ..+.|.+|+..+... .+|+|-.. ...-..| ++.+.+
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~--------------gadiIgin~rdl~~~~~d-~~~~~~ 203 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL--------------GAPLIGINNRNLKTFEVD-LETTER 203 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc--------------CCCEEEECCCCcccccCC-HHHHHH
Confidence 34444 3334444445556678775 457888888666543 46766543 1122333 666777
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHH
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH-----LGKPLNRDHLMEAI 1127 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y-----L~KP~~~~~L~~~I 1127 (1131)
+...-+ ...|+|+.++-.++++..+++++|+|++ |+|+-++.+....+
T Consensus 204 l~~~~p---~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 204 LAPLIP---SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred HHHhCC---CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 765421 1358999999999999999999999997 55666665544433
No 193
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=64.60 E-value=6.7 Score=49.77 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=16.9
Q ss_pred EEEEEecCCCCCcchHhhhc
Q 042553 568 TFEVDDTGKGIPKEKRKTVF 587 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IF 587 (1131)
+|.|.|+|+||+++++.+-|
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 68999999999999876544
No 194
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=64.57 E-value=66 Score=35.19 Aligned_cols=83 Identities=25% Similarity=0.215 Sum_probs=55.6
Q ss_pred HHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH-----HHHHHHHhhhhccCC
Q 042553 1013 VAEINLRHLGATVEAC--ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG-----YEATRKIREEEKRNQ 1085 (1131)
Q Consensus 1013 ~l~~~L~~~g~~v~~a--~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG-----~e~~r~IR~~~~~~~ 1085 (1131)
...+.|-+.||.|... .|.--|-++..-+ .-.+|=+--|.-.| -..++.|++..
T Consensus 114 ~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~G---------------caavMPlgsPIGSg~Gi~n~~~l~~i~~~~---- 174 (247)
T PF05690_consen 114 KAAEILVKEGFVVLPYCTDDPVLAKRLEDAG---------------CAAVMPLGSPIGSGRGIQNPYNLRIIIERA---- 174 (247)
T ss_dssp HHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT----------------SEBEEBSSSTTT---SSTHHHHHHHHHHG----
T ss_pred HHHHHHHHCCCEEeecCCCCHHHHHHHHHCC---------------CCEEEecccccccCcCCCCHHHHHHHHHhc----
Confidence 4556777899998754 4555554444432 23688888887766 35678887652
Q ss_pred CCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1086 VHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1086 ~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.+|||+=.+-..+++...+++.|+|+.|.
T Consensus 175 -~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 175 -DVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp -SSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred -CCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 68999999999999999999999999986
No 195
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=64.18 E-value=28 Score=35.27 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=34.8
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKR 744 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~~ 744 (1131)
+.++++|+....+.+...++..|+.|..+.+.++....++.
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art 51 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART 51 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc
Confidence 57888899999999999999999999999998876655543
No 196
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=63.73 E-value=52 Score=35.14 Aligned_cols=93 Identities=16% Similarity=0.092 Sum_probs=60.8
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC-H-HHHHHHHhh
Q 042553 1005 DDSMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN-G-YEATRKIRE 1079 (1131)
Q Consensus 1005 dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md-G-~e~~r~IR~ 1079 (1131)
|.|.+-..++..+|+..||+|... ...++.++.+.+. .||+|.+-+.|+..- . -++++.+|+
T Consensus 95 d~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~-------------~pd~v~lS~~~~~~~~~~~~~i~~l~~ 161 (197)
T TIGR02370 95 DVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKE-------------KPLMLTGSALMTTTMYGQKDINDKLKE 161 (197)
T ss_pred chhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEccccccCHHHHHHHHHHHHH
Confidence 345566678899999999999854 3557777777763 799999998886532 2 345566665
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
... ..+++|+ +.+..... .-+.+.|+|.|-.
T Consensus 162 ~~~--~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 162 EGY--RDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred cCC--CCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 421 1235544 44444332 2466789999854
No 197
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=62.99 E-value=25 Score=37.20 Aligned_cols=92 Identities=26% Similarity=0.282 Sum_probs=59.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC--CCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE--MPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~--MP~mdG~e~~r~ 1076 (1131)
++||++|....+---+..+++..|++|.+..|....++.++. ..||.|++--. -|...| -....
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~-------------~~pd~iviSPGPG~P~d~G-~~~~~ 67 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA-------------LKPDAIVISPGPGTPKDAG-ISLEL 67 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh-------------cCCCEEEEcCCCCChHHcc-hHHHH
Confidence 579999999999999999999999999888777444444443 26899999632 233222 23344
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCE
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV 1112 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~ 1112 (1131)
||+. ..++||+.+.= ....-+...|.+-
T Consensus 68 i~~~----~~~~PiLGVCL----GHQai~~~fGg~V 95 (191)
T COG0512 68 IRRF----AGRIPILGVCL----GHQAIAEAFGGKV 95 (191)
T ss_pred HHHh----cCCCCEEEECc----cHHHHHHHhCCEE
Confidence 5543 12589998863 2233344455543
No 198
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=61.88 E-value=1.4e+02 Score=27.78 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 042553 336 VFKSARAARKEMHL 349 (1131)
Q Consensus 336 ~~~~~~~~~~e~~~ 349 (1131)
+|--.+..+.+|+.
T Consensus 37 IW~~~r~~r~~MKE 50 (121)
T PF10669_consen 37 IWHDSRQVRIRMKE 50 (121)
T ss_pred HhhhHHHHHHHHHH
Confidence 34344444555544
No 199
>PLN03029 type-a response regulator protein; Provisional
Probab=61.83 E-value=38 Score=36.81 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=35.2
Q ss_pred CCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 701 EGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 701 ~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
...++++++++...+..+...|+.+|+.+..+.++......+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l 48 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFL 48 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHH
Confidence 346899999999999999999999999999888877655444
No 200
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=61.72 E-value=1e+02 Score=33.37 Aligned_cols=79 Identities=23% Similarity=0.236 Sum_probs=54.2
Q ss_pred HHhCC-CEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC-------CCCCCHHHHHHHHhhhhccCCCCc
Q 042553 1018 LRHLG-ATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE-------MPIMNGYEATRKIREEEKRNQVHI 1088 (1131)
Q Consensus 1018 L~~~g-~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~-------MP~mdG~e~~r~IR~~~~~~~~~i 1088 (1131)
+++.| ..+ ..+.+.+++...... .+|+|..... .+...+++.++++|+. ..+
T Consensus 118 ~~~~g~~~iiv~v~t~~ea~~a~~~--------------G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~-----~~i 178 (219)
T cd04729 118 IHEEYNCLLMADISTLEEALNAAKL--------------GFDIIGTTLSGYTEETAKTEDPDFELLKELRKA-----LGI 178 (219)
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHc--------------CCCEEEccCccccccccCCCCCCHHHHHHHHHh-----cCC
Confidence 33444 443 346778888666654 4787754211 1223457889999864 258
Q ss_pred cEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1089 PIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1089 pIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
||++..+-.+.++..+++++|+|+++.
T Consensus 179 pvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 179 PVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred CEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 999988888899999999999999865
No 201
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=61.46 E-value=1.2e+02 Score=35.11 Aligned_cols=97 Identities=20% Similarity=0.104 Sum_probs=64.5
Q ss_pred eEEEEe----CCHHHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcC-------C-
Q 042553 1000 KILVAD----DSMMLRRVAEINLRHLG-ATVEA--CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDC-------E- 1064 (1131)
Q Consensus 1000 ~ILvvd----D~~~~~~~l~~~L~~~g-~~v~~--a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi-------~- 1064 (1131)
.++.+| +.....+.++.+-++.. ..|.. +.+.++|..+... .+|.|..-. .
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a--------------Gad~i~vg~~~G~~~~t~ 178 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA--------------GADATKVGIGPGKVCITK 178 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc--------------CcCEEEECCCCCcccccc
Confidence 477774 23344455555555543 44433 7799999888875 477766331 1
Q ss_pred --CC-CCC--HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1065 --MP-IMN--GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1065 --MP-~md--G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.. ... ++.+++.+++. .++|||+-.+-....+..+|+.+||+.+..
T Consensus 179 ~~~g~~~~~w~l~ai~~~~~~-----~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 179 IKTGFGTGGWQLAALRWCAKA-----ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred cccCCCCCccHHHHHHHHHHH-----cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 11 112 56678888753 258999999999999999999999998753
No 202
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=61.24 E-value=38 Score=36.42 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.0
Q ss_pred cccCCCCCccccccccchhHHHHHhh
Q 042553 851 DETMDPNDDVLLKPFHGSRLYKVIKL 876 (1131)
Q Consensus 851 ~~~~~~~~~~l~kP~~~s~l~~~l~~ 876 (1131)
..+.-|..+||.|||.-.++.+.|..
T Consensus 91 ~alr~Gv~DYLiKPf~~eRl~~aL~~ 116 (224)
T COG4565 91 EALRYGVVDYLIKPFTFERLQQALTR 116 (224)
T ss_pred HHHhcCchhheecceeHHHHHHHHHH
Confidence 34455778999999999999998864
No 203
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=61.20 E-value=26 Score=46.62 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=36.0
Q ss_pred CCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 701 EGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 701 ~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.+.++++++|++..+..+...|+.+|+.+..+.+..+....+
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l 841 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL 841 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH
Confidence 467899999999999999999999999999988887655444
No 204
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=61.07 E-value=9.8 Score=47.01 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=15.0
Q ss_pred EEEEEecCCCCCcchHh
Q 042553 568 TFEVDDTGKGIPKEKRK 584 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~ 584 (1131)
+++|.|||+||+++++.
T Consensus 75 TLtI~DNGIGMT~~Ev~ 91 (623)
T COG0326 75 TLTISDNGIGMTKDEVI 91 (623)
T ss_pred EEEEEeCCCCCCHHHHH
Confidence 68999999999998764
No 205
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=61.02 E-value=84 Score=35.10 Aligned_cols=100 Identities=7% Similarity=-0.004 Sum_probs=65.7
Q ss_pred HHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEE
Q 042553 1014 AEINLRHLGAT--VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPII 1091 (1131)
Q Consensus 1014 l~~~L~~~g~~--v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipII 1091 (1131)
++..|..-... +........+.+++... .||.|++|++--.+|--++...||..... .++.+
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~-------------G~D~v~iD~EHg~~~~~~~~~~i~a~~~~---g~~~l 73 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLGLA-------------GFDWLVLDGEHAPNDVSTFIPQLMALKGS---ASAPV 73 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhc-------------CCCEEEEccccCCCCHHHHHHHHHHHhhc---CCCcE
Confidence 45555542222 22223345667776652 69999999999999988888888876431 23344
Q ss_pred EEcccCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHH
Q 042553 1092 ALTAHISGEEADKTIEAGMDVHLGKP-LNRDHLMEAIKY 1129 (1131)
Q Consensus 1092 alTa~~~~~~~~~~l~aG~d~yL~KP-~~~~~L~~~I~~ 1129 (1131)
+=....+.....+++++|+++.+.-= -+.++..++++.
T Consensus 74 VRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a 112 (256)
T PRK10558 74 VRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVAS 112 (256)
T ss_pred EECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHH
Confidence 44455578889999999999987632 346666665543
No 206
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=60.30 E-value=24 Score=47.00 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=35.1
Q ss_pred CCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 701 EGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 701 ~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.+.++++++|++..+..+...|+.+|+.+..+.+..+....+
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l 742 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECF 742 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH
Confidence 446799999999999999999999999999888877654443
No 207
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=60.05 E-value=34 Score=45.30 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=34.5
Q ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHH
Q 042553 700 HEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHS 740 (1131)
Q Consensus 700 ~~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~ 740 (1131)
..+.++++++|++..+..+...++.+|+.+..+.+..+...
T Consensus 679 ~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~ 719 (914)
T PRK11466 679 LDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALE 719 (914)
T ss_pred cCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHH
Confidence 34678999999999999999999999999988887765443
No 208
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=59.17 E-value=65 Score=34.09 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=55.7
Q ss_pred hCCCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCC
Q 042553 1020 HLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHIS 1098 (1131)
Q Consensus 1020 ~~g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~ 1098 (1131)
..|.. +..+.+.+|+.++.+. .+|+|-++- ++.. |.+.++.+++. .+++|+++..+- .
T Consensus 95 ~~~~~~i~gv~t~~e~~~A~~~--------------Gad~i~~~p-~~~~-g~~~~~~l~~~----~~~~p~~a~GGI-~ 153 (190)
T cd00452 95 RAGIPLLPGVATPTEIMQALEL--------------GADIVKLFP-AEAV-GPAYIKALKGP----FPQVRFMPTGGV-S 153 (190)
T ss_pred HcCCcEECCcCCHHHHHHHHHC--------------CCCEEEEcC-Cccc-CHHHHHHHHhh----CCCCeEEEeCCC-C
Confidence 34443 3457799999988765 489998864 4444 99999999764 235898888776 7
Q ss_pred HHHHHHHHHcCCCEEEE
Q 042553 1099 GEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1099 ~~~~~~~l~aG~d~yL~ 1115 (1131)
.+....++++|++....
T Consensus 154 ~~n~~~~~~~G~~~v~v 170 (190)
T cd00452 154 LDNAAEWLAAGVVAVGG 170 (190)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 88899999999988744
No 209
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=58.75 E-value=54 Score=36.87 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=41.8
Q ss_pred CHHHHHHHHhhhhccCCCCccEE--EEcccCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHH
Q 042553 1069 NGYEATRKIREEEKRNQVHIPII--ALTAHISGEEADKTIEAGMDVH-----LGKPLNRDHLMEAI 1127 (1131)
Q Consensus 1069 dG~e~~r~IR~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~y-----L~KP~~~~~L~~~I 1127 (1131)
-|+++++++++. ..+||| +..+-.++++...++++|+|++ ++|.-++.+....+
T Consensus 184 ~~~elLkei~~~-----~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akaf 244 (287)
T TIGR00343 184 VPVELLLEVLKL-----GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAI 244 (287)
T ss_pred CCHHHHHHHHHh-----CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHH
Confidence 678999999874 258998 8888889999999999999998 45554565554444
No 210
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=57.27 E-value=11 Score=48.43 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhccCCC---eEEEEE
Q 042553 488 VKLKQILSNLLSNAVKFTSEG---HISVRA 514 (1131)
Q Consensus 488 ~rL~QIL~NLL~NAiKfT~~G---~I~v~~ 514 (1131)
.-|.+++.-||+|||.-.-.| .|.|.+
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i 65 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTI 65 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEE
Confidence 468999999999999833334 455544
No 211
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=56.68 E-value=1.2e+02 Score=33.61 Aligned_cols=85 Identities=8% Similarity=0.043 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHc
Q 042553 1029 ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA 1108 (1131)
Q Consensus 1029 ~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~a 1108 (1131)
.....+.+++.. ..||.|++|++--.+|--++...+|..... .++.++=....+.....+++++
T Consensus 20 ~~sp~~~e~~a~-------------~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~---g~~~~VRvp~~~~~~i~r~LD~ 83 (249)
T TIGR03239 20 LGNPITTEVLGL-------------AGFDWLLLDGEHAPNDVLTFIPQLMALKGS---ASAPVVRPPWNEPVIIKRLLDI 83 (249)
T ss_pred CCCcHHHHHHHh-------------cCCCEEEEecccCCCCHHHHHHHHHHHhhc---CCCcEEECCCCCHHHHHHHhcC
Confidence 344566676664 269999999999999998888888876432 2333444455678889999999
Q ss_pred CCCEEEECCC-CHHHHHHHHHH
Q 042553 1109 GMDVHLGKPL-NRDHLMEAIKY 1129 (1131)
Q Consensus 1109 G~d~yL~KP~-~~~~L~~~I~~ 1129 (1131)
|+++.+.-=+ +.++..++++.
T Consensus 84 Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 84 GFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred CCCEEEecCcCCHHHHHHHHHH
Confidence 9999877323 46666655543
No 212
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=56.27 E-value=54 Score=37.02 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=52.8
Q ss_pred EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHH
Q 042553 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD 1103 (1131)
Q Consensus 1024 ~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~ 1103 (1131)
....+.+.+||.+++.. .+|+|++| +|+..+=-++.+.+|+. .++ .++..++.-..+...
T Consensus 191 IeVEv~tleea~ea~~~--------------GaDiI~lD-n~~~e~l~~~v~~l~~~----~~~-~~leasGGI~~~ni~ 250 (277)
T TIGR01334 191 ITVEADTIEQALTVLQA--------------SPDILQLD-KFTPQQLHHLHERLKFF----DHI-PTLAAAGGINPENIA 250 (277)
T ss_pred EEEECCCHHHHHHHHHc--------------CcCEEEEC-CCCHHHHHHHHHHHhcc----CCC-EEEEEECCCCHHHHH
Confidence 34567899999999875 48999999 56555555666666532 123 367889999999998
Q ss_pred HHHHcCCCEEE
Q 042553 1104 KTIEAGMDVHL 1114 (1131)
Q Consensus 1104 ~~l~aG~d~yL 1114 (1131)
...+.|+|-+.
T Consensus 251 ~ya~~GvD~is 261 (277)
T TIGR01334 251 DYIEAGIDLFI 261 (277)
T ss_pred HHHhcCCCEEE
Confidence 99999998753
No 213
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.99 E-value=89 Score=29.14 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=56.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEE--CCHH-HHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEAC--ENGE-AALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a--~ng~-eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
+||||-..+.....++..+++.|+..... .++. ..-..+... ....|+||+=. +.-+-.++..
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~-----------i~~aD~VIv~t---~~vsH~~~~~ 66 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSK-----------IKKADLVIVFT---DYVSHNAMWK 66 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHh-----------cCCCCEEEEEe---CCcChHHHHH
Confidence 48999998888888999999999998888 2222 211122221 12578887733 3345666777
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHH
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTI 1106 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l 1106 (1131)
+++..+. ..+|++..-.. ......+++
T Consensus 67 vk~~akk--~~ip~~~~~~~-~~~~l~~~l 93 (97)
T PF10087_consen 67 VKKAAKK--YGIPIIYSRSR-GVSSLERAL 93 (97)
T ss_pred HHHHHHH--cCCcEEEECCC-CHHHHHHHH
Confidence 7766543 36888876543 333444444
No 214
>PRK14974 cell division protein FtsY; Provisional
Probab=55.09 E-value=1.3e+02 Score=35.12 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=57.2
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHHhCCCEEEEECCH-------HHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC
Q 042553 998 GKKILVADDSM---MLRRVAEINLRHLGATVEACENG-------EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI 1067 (1131)
Q Consensus 998 ~~~ILvvdD~~---~~~~~l~~~L~~~g~~v~~a~ng-------~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~ 1067 (1131)
+.+|++++-+. -....+.......|..+.....+ .+|++.... ..+|+||+|.- +
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~-------------~~~DvVLIDTa--G 232 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA-------------RGIDVVLIDTA--G 232 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh-------------CCCCEEEEECC--C
Confidence 56788887663 23345566667778776654433 233333332 25899999964 3
Q ss_pred CC--HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHH--HHH--HcCCCEEEE
Q 042553 1068 MN--GYEATRKIREEEKRNQVHIPIIALTAHISGEEAD--KTI--EAGMDVHLG 1115 (1131)
Q Consensus 1068 md--G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~--~~l--~aG~d~yL~ 1115 (1131)
.. -.+++..++.......++..++++.+....+... +.+ ..|.++.+.
T Consensus 233 r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 233 RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 22 2445555554433334555577776655443332 233 368887654
No 215
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=54.79 E-value=16 Score=45.11 Aligned_cols=57 Identities=23% Similarity=0.382 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEE
Q 042553 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT 568 (1131)
Q Consensus 489 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (1131)
-|.|++.-|+-|+|..-. -.|.|++.. ..+.
T Consensus 21 sla~~VeElv~NSiDA~A-t~V~v~V~~------------------------------------------------~t~s 51 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAEA-TCVAVRVNM------------------------------------------------ETFS 51 (1142)
T ss_pred HHHHHHHHHHhhccccCc-eEEEEEecC------------------------------------------------ceeE
Confidence 588999999999998632 245555422 1467
Q ss_pred EEEEecCCCCCcchHhhhccCCeecC
Q 042553 569 FEVDDTGKGIPKEKRKTVFENYVQVK 594 (1131)
Q Consensus 569 i~V~DtG~GI~~e~~~~IFe~F~q~~ 594 (1131)
+.|.|+|.|+..++++.+-++|++.+
T Consensus 52 v~ViDdG~G~~rdDl~~lg~ry~TSK 77 (1142)
T KOG1977|consen 52 VQVIDDGFGMGRDDLEKLGNRYFTSK 77 (1142)
T ss_pred EEEEecCCCccHHHHHHHHhhhhhhh
Confidence 89999999999999999999998753
No 216
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=54.70 E-value=1.4e+02 Score=33.56 Aligned_cols=84 Identities=10% Similarity=0.102 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHc
Q 042553 1029 ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA 1108 (1131)
Q Consensus 1029 ~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~a 1108 (1131)
...-.+.+++... .||.|++|++--..|--++...||..... .++.++=....+.....+++++
T Consensus 26 ~~sp~~~E~~a~~-------------GfD~v~iD~EHg~~~~~~l~~~i~a~~~~---g~~~lVRvp~~~~~~i~r~LD~ 89 (267)
T PRK10128 26 STTSYMAEIAATS-------------GYDWLLIDGEHAPNTIQDLYHQLQAIAPY---ASQPVIRPVEGSKPLIKQVLDI 89 (267)
T ss_pred CCCcHHHHHHHHc-------------CCCEEEEccccCCCCHHHHHHHHHHHHhc---CCCeEEECCCCCHHHHHHHhCC
Confidence 3335666766652 69999999999999888888888876532 2333444455678888999999
Q ss_pred CCCEEEECCC-CHHHHHHHHH
Q 042553 1109 GMDVHLGKPL-NRDHLMEAIK 1128 (1131)
Q Consensus 1109 G~d~yL~KP~-~~~~L~~~I~ 1128 (1131)
|+++.+.-=+ +.++..++++
T Consensus 90 GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 90 GAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred CCCeeEecCcCCHHHHHHHHH
Confidence 9999988433 4555555554
No 217
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=54.24 E-value=1.3e+02 Score=33.19 Aligned_cols=57 Identities=23% Similarity=0.157 Sum_probs=45.4
Q ss_pred CccEEEEcCCCCCC--CHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1055 PYDYILMDCEMPIM--NGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1055 ~~DlILmDi~MP~m--dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..|.|-+|...|+. --++.+++|++.- ..+|||+--+-.+.++..+++++|+|+...
T Consensus 161 Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~----~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 161 GFDGIHVDAMYPGKPYADMDLLKILSEEF----NDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCCEEEEeeCCCCCchhhHHHHHHHHHhc----CCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 57888889877764 2478888887641 248999998888899999999999998754
No 218
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.07 E-value=1e+02 Score=34.93 Aligned_cols=95 Identities=22% Similarity=0.267 Sum_probs=60.3
Q ss_pred EEEEeCCHHHHHHHHHHHH---hCC--C-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHH
Q 042553 1001 ILVADDSMMLRRVAEINLR---HLG--A-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074 (1131)
Q Consensus 1001 ILvvdD~~~~~~~l~~~L~---~~g--~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~ 1074 (1131)
|||-|+|-... .+...++ +.. . -...+.+.+||.+++.. ..|+|++|=+.|. +=-++.
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a--------------gaDiI~LDn~~~e-~l~~~v 220 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA--------------GADIIMLDNMTPE-EIREVI 220 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc--------------CcCEEEECCCCHH-HHHHHH
Confidence 77777775443 2333332 222 1 34568999999999985 4899999955433 223334
Q ss_pred HHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1075 RKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1075 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
+.+++... .++ ..+..++.-..+...+..+.|+|.+.
T Consensus 221 ~~l~~~~~--~~~-~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 221 EALKREGL--RER-VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred HHHHhcCc--CCC-EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 44443211 123 36777888889999999999999764
No 219
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=54.03 E-value=1.4e+02 Score=33.17 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHc
Q 042553 1029 ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA 1108 (1131)
Q Consensus 1029 ~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~a 1108 (1131)
......++++.. ..||.|++|++--.+|--++...||..+.. + ..|++=+ ...+..+..+++++
T Consensus 20 ~~~p~~~e~~~~-------------~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~-g-~~~~VRv-~~~~~~~i~~~Ld~ 83 (249)
T TIGR02311 20 LADPYAAEICAG-------------AGFDWLLIDGEHAPNDVRTILSQLQALAPY-P-SSPVVRP-AIGDPVLIKQLLDI 83 (249)
T ss_pred CCCcHHHHHHHh-------------cCCCEEEEeccCCCCCHHHHHHHHHHHHhc-C-CCcEEEC-CCCCHHHHHHHhCC
Confidence 344566666654 269999999999889988888888876321 1 2444444 44456788999999
Q ss_pred CCCEEE-ECCCCHHHHHHHHHHh
Q 042553 1109 GMDVHL-GKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1109 G~d~yL-~KP~~~~~L~~~I~~l 1130 (1131)
|+++.+ .|--+.++..+.++.+
T Consensus 84 Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 84 GAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred CCCEEEecCcCCHHHHHHHHHHc
Confidence 999875 4556788887777653
No 220
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=53.98 E-value=34 Score=44.47 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=34.5
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
+.++++++|++..+..+...++.+|+.+..+.++.+....+
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~ 565 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMF 565 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHh
Confidence 46799999999999999999999999999888877654433
No 221
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=53.83 E-value=1.9e+02 Score=30.51 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCEEE----EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC-----CCCCCHHHHHHHHhhhhc
Q 042553 1012 RVAEINLRHLGATVE----ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE-----MPIMNGYEATRKIREEEK 1082 (1131)
Q Consensus 1012 ~~l~~~L~~~g~~v~----~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~-----MP~mdG~e~~r~IR~~~~ 1082 (1131)
..+....++.|..+. .+.+..+++..+.. ..|.|.+... .....+.+.++++++.
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~--------------~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-- 156 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKL--------------GVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-- 156 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHC--------------CCCEEEEcCcccccccCCCCCHHHHHHHHhh--
Confidence 334455666776654 55688888875543 4788777421 1124567788888754
Q ss_pred cCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1083 RNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1083 ~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.++||++.-+- ..+...+++++|+|.++.
T Consensus 157 ---~~~~i~~~GGI-~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 157 ---LGVKVAVAGGI-TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred ---cCCCEEEECCc-CHHHHHHHHhcCCCEEEE
Confidence 35787765554 588899999999998743
No 222
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=53.34 E-value=55 Score=36.76 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=35.0
Q ss_pred CCHHHHHHHHhhhhccCCCCccEE--EEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1068 MNGYEATRKIREEEKRNQVHIPII--ALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1068 mdG~e~~r~IR~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
-.|+++++++++. ..+||| +..+-..+++..++++.|+++++.
T Consensus 180 ~~d~elLk~l~~~-----~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaV 224 (283)
T cd04727 180 QAPYELVKETAKL-----GRLPVVNFAAGGVATPADAALMMQLGADGVFV 224 (283)
T ss_pred CCCHHHHHHHHHh-----cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3578888888874 258997 888877999999999999999853
No 223
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.07 E-value=1e+02 Score=33.65 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=60.7
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEc
Q 042553 1016 INLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALT 1094 (1131)
Q Consensus 1016 ~~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalT 1094 (1131)
..|.+.+. -|....+.++|++..+.-. .--+=.+.+.|-.-++++.++.||+......+++ +|..-
T Consensus 10 ~~l~~~~vi~Vvr~~~~~~a~~~~~al~------------~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~-~vGaG 76 (222)
T PRK07114 10 TAMKATGMVPVFYHADVEVAKKVIKACY------------DGGARVFEFTNRGDFAHEVFAELVKYAAKELPGM-ILGVG 76 (222)
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHH------------HCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCe-EEeeE
Confidence 45555553 4667788888888765421 1123355666767778999998875432222333 34443
Q ss_pred ccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1095 a~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
.-.+.++.+.++++|++ |+.-|.--.++.+..+
T Consensus 77 TVl~~e~a~~a~~aGA~-FiVsP~~~~~v~~~~~ 109 (222)
T PRK07114 77 SIVDAATAALYIQLGAN-FIVTPLFNPDIAKVCN 109 (222)
T ss_pred eCcCHHHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 44567888999999998 5555655555555443
No 224
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=52.57 E-value=1.3e+02 Score=32.59 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=43.0
Q ss_pred Ccc-EEEEcCCCCCC-CH--HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1055 PYD-YILMDCEMPIM-NG--YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1055 ~~D-lILmDi~MP~m-dG--~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.+| ++++|+.--++ .| +++++++++. ..+||++-.+-.+.++..++++.|+++++.
T Consensus 158 g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-----~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 158 GLEGIIYTDISRDGTLSGPNFELTKELVKA-----VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 466 77788754332 22 6888888764 368999999989999999999999999875
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.12 E-value=1.4e+02 Score=35.52 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=61.3
Q ss_pred CCCeEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH--H
Q 042553 997 RGKKILVADDSMM---LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG--Y 1071 (1131)
Q Consensus 997 ~~~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG--~ 1071 (1131)
.+.+|++++-|+- ....++..-+..|+.+..+.+..+..+.+.... ....+|+||+|. |+.+- .
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk---------~~~~~DvVLIDT--aGRs~kd~ 336 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK---------EEARVDYILIDT--AGKNYRAS 336 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH---------hccCCCEEEEeC--ccccCcCH
Confidence 3567888887653 334555566677888888877766555554310 002589999995 33222 3
Q ss_pred HHHHHHhhhhccCCCCccEEEEcccCCHHHHHH---HH-HcCCCEEEE
Q 042553 1072 EATRKIREEEKRNQVHIPIIALTAHISGEEADK---TI-EAGMDVHLG 1115 (1131)
Q Consensus 1072 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~---~l-~aG~d~yL~ 1115 (1131)
+.++.+++.-....++-.++++++.....+... .+ ..|.+++|.
T Consensus 337 ~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~ 384 (436)
T PRK11889 337 ETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 384 (436)
T ss_pred HHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEE
Confidence 445555443322234444677777655544333 22 457887754
No 226
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=51.83 E-value=1.2e+02 Score=34.79 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=59.6
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC---CC--CCCHHHHHHHHhhhhccCCCC
Q 042553 1014 AEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE---MP--IMNGYEATRKIREEEKRNQVH 1087 (1131)
Q Consensus 1014 l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~---MP--~mdG~e~~r~IR~~~~~~~~~ 1087 (1131)
+...++..|..|. .+.+.++|..+.+. ..|.|+..-. .. ...-+++++++++. .+
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~--------------GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~-----~~ 161 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA--------------GADAVIAEGMESGGHIGELTTMALVPQVVDA-----VS 161 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc--------------CCCEEEEECcccCCCCCCCcHHHHHHHHHHH-----hC
Confidence 3445666687654 57888888777664 4788887332 21 22347888888864 25
Q ss_pred ccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1088 IPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1088 ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+|||+--+-.+.++..+++..|+|+...
T Consensus 162 iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 162 IPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 8999999888899999999999998753
No 227
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=51.72 E-value=49 Score=33.36 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=46.4
Q ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC
Q 042553 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACE----NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI 1067 (1131)
Q Consensus 994 ~~~~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~----ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~ 1067 (1131)
..++|++|+|+..+....+-+..+|.+.|+.|..+. |.+++++ ..|+|+.-..-|.
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~------------------~ADIVvsAtg~~~ 83 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH------------------DADVVVVGSPKPE 83 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh------------------hCCEEEEecCCCC
Confidence 357889999999999999999999999999999998 5555433 3689998877664
No 228
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.52 E-value=1.2e+02 Score=32.93 Aligned_cols=95 Identities=21% Similarity=0.182 Sum_probs=58.2
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEc
Q 042553 1016 INLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALT 1094 (1131)
Q Consensus 1016 ~~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalT 1094 (1131)
..|.+.+. -|....+.++|++..+.-. ...+++| .+.|-.-+++++++.+|+.. +++ +|..-
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~----------~~Gi~~i--Eitl~~~~~~~~I~~l~~~~----p~~-~IGAG 72 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALV----------AGGLPVL--EVTLRTPAALEAIRLIAKEV----PEA-LIGAG 72 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHH----------HcCCCEE--EEecCCccHHHHHHHHHHHC----CCC-EEEEe
Confidence 44555554 4666788888888776421 0135544 33455558999999998752 343 33333
Q ss_pred ccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1095 a~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
.-.+.++.+.++++|++ |++-|.--.++.+..+
T Consensus 73 TVl~~~~a~~a~~aGA~-FivsP~~~~~vi~~a~ 105 (212)
T PRK05718 73 TVLNPEQLAQAIEAGAQ-FIVSPGLTPPLLKAAQ 105 (212)
T ss_pred eccCHHHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 34556888999999998 5555644445555443
No 229
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=51.37 E-value=80 Score=33.89 Aligned_cols=37 Identities=11% Similarity=0.339 Sum_probs=31.0
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
..++++++++...+..+...++..|+.+..+.+....
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 41 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQM 41 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 3578899999999999999999999999887776554
No 230
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=51.03 E-value=15 Score=44.28 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=18.4
Q ss_pred CCCCccccccccchhHHHHHhh
Q 042553 855 DPNDDVLLKPFHGSRLYKVIKL 876 (1131)
Q Consensus 855 ~~~~~~l~kP~~~s~l~~~l~~ 876 (1131)
-+..++|+||+....|...|..
T Consensus 97 lGV~dYLLKP~~k~eL~~~L~k 118 (475)
T COG4753 97 LGVKDYLLKPVDKAELEEALKK 118 (475)
T ss_pred cCchhheeCcCCHHHHHHHHHH
Confidence 3567899999999999888865
No 231
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=50.84 E-value=1.1e+02 Score=32.42 Aligned_cols=71 Identities=27% Similarity=0.281 Sum_probs=50.7
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC--------CCHHHHHHHHhhhhccCCCCccEEEEccc
Q 042553 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI--------MNGYEATRKIREEEKRNQVHIPIIALTAH 1096 (1131)
Q Consensus 1025 v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~--------mdG~e~~r~IR~~~~~~~~~ipIIalTa~ 1096 (1131)
-..+.+.+|+.+..+. ..|+|.++-..|. ..|++.++++.+.. +.+||+++-+-
T Consensus 100 g~s~h~~~e~~~a~~~--------------g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~----~~~pv~a~GGI 161 (196)
T TIGR00693 100 GVSTHNLEELAEAEAE--------------GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS----IDIPIVAIGGI 161 (196)
T ss_pred EEeCCCHHHHHHHhHc--------------CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----CCCCEEEECCc
Confidence 3457777887765543 5899987655542 24788888887541 24899988765
Q ss_pred CCHHHHHHHHHcCCCEEE
Q 042553 1097 ISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1097 ~~~~~~~~~l~aG~d~yL 1114 (1131)
..+...++++.|++++.
T Consensus 162 -~~~~~~~~~~~G~~gva 178 (196)
T TIGR00693 162 -TLENAAEVLAAGADGVA 178 (196)
T ss_pred -CHHHHHHHHHcCCCEEE
Confidence 57888889999999874
No 232
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=50.81 E-value=1e+02 Score=28.52 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042553 325 TVGVLISMLTFVFKSARAARKEMHLCA 351 (1131)
Q Consensus 325 ~~~i~~~~~~~~~~~~~~~~~e~~~~~ 351 (1131)
++++++++++++++..+.++++...+.
T Consensus 10 ~~~v~~~i~~y~~~k~~ka~~~~~kL~ 36 (87)
T PF10883_consen 10 VGAVVALILAYLWWKVKKAKKQNAKLQ 36 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666666666644433
No 233
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=49.75 E-value=1.2e+02 Score=31.45 Aligned_cols=74 Identities=27% Similarity=0.297 Sum_probs=50.8
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC--------CCCHHHHHHHHhhhhccCCCCccEEE
Q 042553 1022 GATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP--------IMNGYEATRKIREEEKRNQVHIPIIA 1092 (1131)
Q Consensus 1022 g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP--------~mdG~e~~r~IR~~~~~~~~~ipIIa 1092 (1131)
+..+. .+.+..++.+.... .+|+|+++..-| ...|++.++++++. .++||++
T Consensus 95 ~~~~g~~~~t~~~~~~~~~~--------------g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~pv~a 155 (196)
T cd00564 95 DLIIGVSTHSLEEALRAEEL--------------GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-----VEIPVVA 155 (196)
T ss_pred CCEEEeeCCCHHHHHHHhhc--------------CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----CCCCEEE
Confidence 44433 34566777666553 489998864433 23567888888764 3589999
Q ss_pred EcccCCHHHHHHHHHcCCCEEEE
Q 042553 1093 LTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1093 lTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+.+- ..+...+++++|++++..
T Consensus 156 ~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 156 IGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred ECCC-CHHHHHHHHHcCCCEEEE
Confidence 8776 467888999999998743
No 234
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=49.73 E-value=1.4e+02 Score=29.20 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCC-CHHHHHHHHhhhhccCC
Q 042553 1009 MLRRVAEINLRHLGATVEAC--ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM-NGYEATRKIREEEKRNQ 1085 (1131)
Q Consensus 1009 ~~~~~l~~~L~~~g~~v~~a--~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~m-dG~e~~r~IR~~~~~~~ 1085 (1131)
+....+..+|++.|+.+... ..-++.++.+... ..||+|.+.+.-+.. ...++++.||+. .
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~------------~~pdiv~~S~~~~~~~~~~~~~~~ik~~----~ 66 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL------------LKPDVVGISLMTSAIYEALELAKIAKEV----L 66 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh------------cCCCEEEEeeccccHHHHHHHHHHHHHH----C
Confidence 34567788899889876653 3455666666531 269999999855544 346678888875 3
Q ss_pred CCccEEEEcccCCHHHHHH-HHHcCCCEEEEC
Q 042553 1086 VHIPIIALTAHISGEEADK-TIEAGMDVHLGK 1116 (1131)
Q Consensus 1086 ~~ipIIalTa~~~~~~~~~-~l~aG~d~yL~K 1116 (1131)
++++||+--.+.+. .-+. ....++| |+.+
T Consensus 67 p~~~iv~GG~~~t~-~p~~~~~~~~~D-~vv~ 96 (127)
T cd02068 67 PNVIVVVGGPHATF-FPEEILEEPGVD-FVVI 96 (127)
T ss_pred CCCEEEECCcchhh-CHHHHhcCCCCC-EEEE
Confidence 46666655444432 2222 2345565 5554
No 235
>PTZ00130 heat shock protein 90; Provisional
Probab=49.01 E-value=13 Score=47.50 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.0
Q ss_pred EEEEEecCCCCCcchHhhh
Q 042553 568 TFEVDDTGKGIPKEKRKTV 586 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~I 586 (1131)
.|.|.|||+||+++++..-
T Consensus 136 tLtI~DnGIGMT~eEl~~n 154 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINN 154 (814)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 5889999999999987643
No 236
>PRK11173 two-component response regulator; Provisional
Probab=48.52 E-value=77 Score=34.09 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=31.1
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHS 740 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~ 740 (1131)
.++++++++...+..+...++..|+.+..+.+......
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~ 41 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQ 41 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHH
Confidence 36888999999999999999999999888777665433
No 237
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=48.16 E-value=1.3e+02 Score=26.75 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=46.2
Q ss_pred chHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHHHHHHH
Q 042553 377 ASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDL 456 (1131)
Q Consensus 377 iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v~~~ 456 (1131)
+.|-.|+=|..|.+++.+-. ....+++.+..+..+......|..+ .+.|--+ + ....+|+.+.+++++..
T Consensus 2 ~~HRVkNnLq~i~sll~lq~-~~~~~~e~~~~L~~~~~RI~aia~v-h~~L~~~----~----~~~~v~l~~yl~~L~~~ 71 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQA-RRSEDPEAREALEDAQNRIQAIALV-HEQLYQS----E----DLSEVDLREYLEELCED 71 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHhcC----C----CCCeecHHHHHHHHHHH
Confidence 57999999999999998743 3334455566666555554444333 3322111 1 23679999999999887
Q ss_pred HH
Q 042553 457 FH 458 (1131)
Q Consensus 457 ~~ 458 (1131)
+.
T Consensus 72 l~ 73 (76)
T PF07568_consen 72 LR 73 (76)
T ss_pred HH
Confidence 64
No 238
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.12 E-value=1.7e+02 Score=35.08 Aligned_cols=104 Identities=10% Similarity=0.023 Sum_probs=60.4
Q ss_pred CCCeEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC--HH
Q 042553 997 RGKKILVADDSMM---LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN--GY 1071 (1131)
Q Consensus 997 ~~~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md--G~ 1071 (1131)
.+.+|++++-|+- ....+....+..|..+..+.+..++.+.+.. ..+|+||+|. |+.. -.
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-------------~~~D~VLIDT--aGr~~rd~ 315 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-------------DGSELILIDT--AGYSHRNL 315 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-------------CCCCEEEEeC--CCCCccCH
Confidence 3568988888761 1234455555667777666666666666653 2699999996 3321 12
Q ss_pred HHHHHHhhhhcc---CCCCccEEEEcccCCHHHHHHHHH----cCCCEEEE
Q 042553 1072 EATRKIREEEKR---NQVHIPIIALTAHISGEEADKTIE----AGMDVHLG 1115 (1131)
Q Consensus 1072 e~~r~IR~~~~~---~~~~ipIIalTa~~~~~~~~~~l~----aG~d~yL~ 1115 (1131)
+.++.+++.... ..+.-.+++|++....++.....+ .|.++.+.
T Consensus 316 ~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 316 EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 333333332111 112346788888877766655543 57776643
No 239
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=48.11 E-value=2.6e+02 Score=30.01 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=52.5
Q ss_pred HhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEc---CCCCCCCHHHHHHHHhhhhccCCCCccEEEEc
Q 042553 1019 RHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMD---CEMPIMNGYEATRKIREEEKRNQVHIPIIALT 1094 (1131)
Q Consensus 1019 ~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmD---i~MP~mdG~e~~r~IR~~~~~~~~~ipIIalT 1094 (1131)
...|..+. .+.+.+++.+..+. .+|.+..- ..+.. .+++.++++++.-. ..+|+|+..
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~--------------g~~~i~~t~~~~~~~~-~~~~~~~~l~~~~~---~~~pvia~g 179 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL--------------GAKIIGINNRDLKTFE-VDLNTTERLAPLIP---KDVILVSES 179 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc--------------CCCEEEEeCCCccccC-cCHHHHHHHHHhCC---CCCEEEEEc
Confidence 45687754 45666766555543 46666543 11112 23577888876411 257999999
Q ss_pred ccCCHHHHHHHHHcCCCEEE
Q 042553 1095 AHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1095 a~~~~~~~~~~l~aG~d~yL 1114 (1131)
+-...++..+++++|+|+++
T Consensus 180 GI~s~edi~~~~~~Ga~gvi 199 (217)
T cd00331 180 GISTPEDVKRLAEAGADAVL 199 (217)
T ss_pred CCCCHHHHHHHHHcCCCEEE
Confidence 99999999999999999985
No 240
>PLN03237 DNA topoisomerase 2; Provisional
Probab=48.01 E-value=29 Score=47.22 Aligned_cols=51 Identities=20% Similarity=0.409 Sum_probs=32.0
Q ss_pred EEEEEecCCCCCcchHh--------hhccCCeec---CC----CCCC-cccchHHHHHHHHHhCCEE
Q 042553 568 TFEVDDTGKGIPKEKRK--------TVFENYVQV---KE----GEGG-TGLGLGIVQSLVRLMGGDI 618 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~--------~IFe~F~q~---~~----~~~G-tGLGLsIvk~Lv~~~gG~I 618 (1131)
.|+|.|+|.|||-+..+ -||--.... +. -.|| .|.|.+.|.-+-+.+--++
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Vev 178 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIET 178 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEEE
Confidence 58999999999976332 234332221 11 1244 6999999888777665444
No 241
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.78 E-value=48 Score=37.04 Aligned_cols=56 Identities=29% Similarity=0.287 Sum_probs=38.3
Q ss_pred CHHHHHHHHhhhhccCCCCccEEEEccc------CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1069 NGYEATRKIREEEKRNQVHIPIIALTAH------ISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1069 dG~e~~r~IR~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
+.++.++++|+. .+.+|+++||=. ..+....+|.++|+|+.|.=.+.+++....+.
T Consensus 75 ~~~~~~~~~r~~----~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~ 136 (258)
T PRK13111 75 DVFELVREIREK----DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRA 136 (258)
T ss_pred HHHHHHHHHHhc----CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 457777888743 246788888732 33455778889999999887677776655543
No 242
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=47.15 E-value=1.1e+02 Score=40.18 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=35.1
Q ss_pred CCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 701 EGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 701 ~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.+.+++++++++..+..+...+..+|+.+..+.+..+....+
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l 737 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWI 737 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 467899999999999999999999999999888777654433
No 243
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=47.05 E-value=23 Score=42.97 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=24.4
Q ss_pred EEEEEecCCCCCcchHhhhccCCeecC
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYVQVK 594 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~q~~ 594 (1131)
.+.|.|+|.||-.|+++-+-|||.+.+
T Consensus 58 LlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 58 LLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred EEEEecCCCccchhhhHHHHHHhhhhh
Confidence 478999999999999999999998754
No 244
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=47.03 E-value=2.2e+02 Score=26.85 Aligned_cols=93 Identities=22% Similarity=0.155 Sum_probs=56.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENG-EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng-~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
.++.++|.++...+ .+...|+.+...+-. .+.++.+. ....+.|++...-. ..-+.++..+
T Consensus 22 ~~vvvid~d~~~~~----~~~~~~~~~i~gd~~~~~~l~~a~-------------i~~a~~vv~~~~~d-~~n~~~~~~~ 83 (116)
T PF02254_consen 22 IDVVVIDRDPERVE----ELREEGVEVIYGDATDPEVLERAG-------------IEKADAVVILTDDD-EENLLIALLA 83 (116)
T ss_dssp SEEEEEESSHHHHH----HHHHTTSEEEES-TTSHHHHHHTT-------------GGCESEEEEESSSH-HHHHHHHHHH
T ss_pred CEEEEEECCcHHHH----HHHhcccccccccchhhhHHhhcC-------------ccccCEEEEccCCH-HHHHHHHHHH
Confidence 47888888876643 334566666554322 33333332 13678888876532 4446777888
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
|+. .+..+||+... +.+......++|+|..+.
T Consensus 84 r~~----~~~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 84 REL----NPDIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp HHH----TTTSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred HHH----CCCCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 875 34577887764 355666777899998764
No 245
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=46.95 E-value=1.7e+02 Score=31.04 Aligned_cols=87 Identities=23% Similarity=0.269 Sum_probs=50.3
Q ss_pred HHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH-------HHHHHHHhhhhcc
Q 042553 1014 AEINLRHLGATVEA---CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG-------YEATRKIREEEKR 1083 (1131)
Q Consensus 1014 l~~~L~~~g~~v~~---a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG-------~e~~r~IR~~~~~ 1083 (1131)
....+++.|..+.. ..+..+.++.+.. ..|.|+.+..-|+..| ++.++++|+.-..
T Consensus 96 ~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~--------------~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~ 161 (210)
T TIGR01163 96 LLQLIKDLGAKAGIVLNPATPLEFLEYVLP--------------DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDE 161 (210)
T ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHHHh--------------hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHh
Confidence 33555566755333 3345666666643 3577776654454433 4555666654322
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1084 NQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1084 ~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..+++||++--+ -..+...++++.|+|.++.
T Consensus 162 ~~~~~~i~v~GG-I~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 162 NGLSILIEVDGG-VNDDNARELAEAGADILVA 192 (210)
T ss_pred cCCCceEEEECC-cCHHHHHHHHHcCCCEEEE
Confidence 223467655444 4578888889999998754
No 246
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=46.83 E-value=2.1e+02 Score=31.56 Aligned_cols=89 Identities=11% Similarity=-0.000 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC------HHHHHHHHhhhh
Q 042553 1011 RRVAEINLRHLGATVEACENG---EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN------GYEATRKIREEE 1081 (1131)
Q Consensus 1011 ~~~l~~~L~~~g~~v~~a~ng---~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md------G~e~~r~IR~~~ 1081 (1131)
...+...+++.|..+..+-+. .+.++.+... ...+++| -.+|+-. -.+.++++|+..
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~-------------~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~ 183 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL-------------SPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV 183 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh-------------CCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc
Confidence 345666778889876655443 3445544331 3567777 5566632 245677777652
Q ss_pred ccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECC
Q 042553 1082 KRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117 (1131)
Q Consensus 1082 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP 1117 (1131)
...||++=.+-...++..++.++|+|+++.-.
T Consensus 184 ----~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 184 ----GNKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred ----CCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 13566543444478888888999999998754
No 247
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=46.49 E-value=1e+02 Score=29.62 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=50.3
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC-HHHHHHHHhhh
Q 042553 1005 DDSMMLRRVAEINLRHLGATVEACE---NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN-GYEATRKIREE 1080 (1131)
Q Consensus 1005 dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md-G~e~~r~IR~~ 1080 (1131)
|-++.....+..++++.|+++.... ..++.++.+.+ ..||+|.+.+.+.... .++.++.+|+.
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~-------------~~pdiV~iS~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE-------------EDADVVGLSALSTTHMEAMKLVIEALKE 76 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH-------------cCCCEEEEecchHhHHHHHHHHHHHHHh
Confidence 6667778889999999999988653 44555666654 2799999998876533 34555555553
Q ss_pred hccCCCCccEEEEccc
Q 042553 1081 EKRNQVHIPIIALTAH 1096 (1131)
Q Consensus 1081 ~~~~~~~ipIIalTa~ 1096 (1131)
. ..+++|++=-.+
T Consensus 77 ~---p~~~~ivvGG~~ 89 (125)
T cd02065 77 L---GIDIPVVVGGAH 89 (125)
T ss_pred c---CCCCeEEEeCCc
Confidence 2 115666654433
No 248
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.61 E-value=2e+02 Score=32.43 Aligned_cols=107 Identities=16% Similarity=0.114 Sum_probs=56.5
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC--HHH
Q 042553 998 GKKILVADDSMM---LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN--GYE 1072 (1131)
Q Consensus 998 ~~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md--G~e 1072 (1131)
+.++.+++-+.. ....++...+..|+.+..+.+..+..+.++.-. ....+|+||+|.- +.. .-+
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~---------~~~~~D~ViIDt~--Gr~~~~~~ 171 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK---------EEARVDYILIDTA--GKNYRASE 171 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH---------hcCCCCEEEEECC--CCCcCCHH
Confidence 346666655432 333455566678888887777644333332100 0125999999963 322 234
Q ss_pred HHHHHhhhhccCCCCccEEEEcccCCHHHHHHHH----HcCCCEEEE
Q 042553 1073 ATRKIREEEKRNQVHIPIIALTAHISGEEADKTI----EAGMDVHLG 1115 (1131)
Q Consensus 1073 ~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL~ 1115 (1131)
.++++++......+.-.++++++.....+....+ ..+.++.+.
T Consensus 172 ~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~ 218 (270)
T PRK06731 172 TVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 218 (270)
T ss_pred HHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEE
Confidence 4555544322223333467787765554443332 357776643
No 249
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=45.39 E-value=1e+02 Score=32.51 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=29.5
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLH 739 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~ 739 (1131)
++++++++...+..+...++..|+.+..+.+..+..
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l 37 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEAD 37 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 477888888889999999999999988777766543
No 250
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=44.97 E-value=1.1e+02 Score=32.46 Aligned_cols=36 Identities=8% Similarity=0.196 Sum_probs=29.2
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
.+++++++++..+..+...++..|+.+..+.+....
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 38 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSA 38 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 358888999988999999999999988877666544
No 251
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.93 E-value=1.9e+02 Score=34.82 Aligned_cols=105 Identities=13% Similarity=0.074 Sum_probs=60.2
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHH--H
Q 042553 998 GKKILVADDSMM---LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGY--E 1072 (1131)
Q Consensus 998 ~~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~--e 1072 (1131)
+.+|.+++-++- ....+..+-+..|+.+..+.+..+....+... ..+|+||+|. |++... .
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~------------~~~DlVlIDt--~G~~~~d~~ 316 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL------------RDCDVILIDT--AGRSQRDKR 316 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh------------CCCCEEEEeC--CCCCCCCHH
Confidence 568999988873 22344455556778887788877766666542 2589999996 333222 2
Q ss_pred HHHHHhhhhc-cCCCCccEEEEcccCCHHHHHHHH----HcCCCEE-EEC
Q 042553 1073 ATRKIREEEK-RNQVHIPIIALTAHISGEEADKTI----EAGMDVH-LGK 1116 (1131)
Q Consensus 1073 ~~r~IR~~~~-~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~y-L~K 1116 (1131)
.+..+++.-. ...+.-..++|++.....+..... ..|.+.+ ++|
T Consensus 317 ~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TK 366 (424)
T PRK05703 317 LIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTK 366 (424)
T ss_pred HHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEec
Confidence 2223322211 111223467788877766655543 3466655 444
No 252
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=44.67 E-value=65 Score=37.27 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=40.2
Q ss_pred ccEEEEcCCCCCCCH-HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1056 YDYILMDCEMPIMNG-YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1056 ~DlILmDi~MP~mdG-~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
.|+|.+|+..+..+. .|++++||+. .+.+|||+=.- .+.++...+.++|+|...
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~----~p~~~vi~g~V-~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKH----LPETFVIAGNV-GTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhh----CCCCeEEEEec-CCHHHHHHHHHcCcCEEE
Confidence 599999999976544 5678888874 34577776322 267888899999999865
No 253
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=44.43 E-value=1.4e+02 Score=31.31 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=27.2
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWER 737 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 737 (1131)
++++++++...+..+...++..|+.+..+.+...
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~ 38 (228)
T PRK11083 5 TILLVEDEQAIADTLVYALQSEGFTVEWFERGLP 38 (228)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHH
Confidence 5888888888888889999989988876655443
No 254
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=44.10 E-value=1.2e+02 Score=32.67 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=29.1
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
++++++++...+..+...++..|+.+..+.+....
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~ 37 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRA 37 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHH
Confidence 57888899999999999999999988877666544
No 255
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=43.96 E-value=2e+02 Score=30.53 Aligned_cols=59 Identities=31% Similarity=0.320 Sum_probs=38.7
Q ss_pred ccEEEEcCCCCCCCH-------HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1056 YDYILMDCEMPIMNG-------YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1056 ~DlILmDi~MP~mdG-------~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.|.|+++...|+-+| .+.++++|+.-....+++||++.-+ -..+...++.++|+|.++.
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GG-I~~env~~~~~~gad~iiv 193 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG-INLETIPLLAEAGADVLVA 193 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEE
Confidence 688888766666544 4456666654322233478765554 4468888999999999865
No 256
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=43.18 E-value=1.9e+02 Score=27.46 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHcCCCEEEECCC--CHHHHHHHHHH
Q 042553 1096 HISGEEADKTIEAGMDVHLGKPL--NRDHLMEAIKY 1129 (1131)
Q Consensus 1096 ~~~~~~~~~~l~aG~d~yL~KP~--~~~~L~~~I~~ 1129 (1131)
....+...+|+++|.+-|+-||+ +.+++.+.++.
T Consensus 73 ~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~ 108 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEA 108 (120)
T ss_dssp GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHH
Confidence 33457788899999999999998 77777776653
No 257
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=43.05 E-value=1.2e+02 Score=32.05 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=28.3
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
++++++++...+..+...++..|+.+..+.+....
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 36 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNG 36 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 47788888989999999999999988777665543
No 258
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.01 E-value=1.9e+02 Score=32.85 Aligned_cols=90 Identities=12% Similarity=0.178 Sum_probs=59.1
Q ss_pred EEEEeCCHHHH--------HHHHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC
Q 042553 1001 ILVADDSMMLR--------RVAEINLRHLGA---TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN 1069 (1131)
Q Consensus 1001 ILvvdD~~~~~--------~~l~~~L~~~g~---~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md 1069 (1131)
|||-|.|-... ..+...-++.++ -.+.+.+-+|+.+.+.. .+|+|++|= |+..+
T Consensus 162 vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~--------------gaDiImLDn-~s~e~ 226 (281)
T PRK06543 162 VMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA--------------GVDTIMLDN-FSLDD 226 (281)
T ss_pred EEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc--------------CCCEEEECC-CCHHH
Confidence 66666654432 233333334443 34579999999999875 589999994 44334
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEE
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y 1113 (1131)
=-++++.++. ..+|-.++.-..+........|+|-.
T Consensus 227 l~~av~~~~~--------~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 227 LREGVELVDG--------RAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred HHHHHHHhCC--------CeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4444544432 12688899999999988889999854
No 259
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=42.79 E-value=2.3e+02 Score=31.94 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=55.3
Q ss_pred CCCeEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCH----H---HHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC
Q 042553 997 RGKKILVADDSMM---LRRVAEINLRHLGATVEACENG----E---AALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP 1066 (1131)
Q Consensus 997 ~~~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~ng----~---eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP 1066 (1131)
.+.+|+++|-|.. ..+.+..+.+..|..+.....+ . ++++.... ..||+||+|. |
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~-------------~~~D~ViIDT--~ 163 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA-------------RNIDVVLIDT--A 163 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH-------------CCCCEEEEeC--C
Confidence 3578999997652 3345566667778666544322 2 22332222 2699999996 3
Q ss_pred CCCH--HHHHHHHhhhhc------cCCCCccEEEEcccCCHHHHHHHH----HcCCCEEE
Q 042553 1067 IMNG--YEATRKIREEEK------RNQVHIPIIALTAHISGEEADKTI----EAGMDVHL 1114 (1131)
Q Consensus 1067 ~mdG--~e~~r~IR~~~~------~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL 1114 (1131)
+... -..+.++++... ...++-.++++.+....+....+. ..|.++.+
T Consensus 164 G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~I 223 (272)
T TIGR00064 164 GRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGII 223 (272)
T ss_pred CCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEE
Confidence 3322 223333333211 112455678887776655444433 25677654
No 260
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=42.74 E-value=2.2e+02 Score=31.65 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=42.9
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcC-CCEEEE------CCCCHHHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG-MDVHLG------KPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~------KP~~~~~L~~~I~~ 1129 (1131)
+++++++++. ..+|||+..+-.+.++..++++.| +++.+. +-++++++.+.++.
T Consensus 188 ~~~~~~i~~~-----~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~ 248 (254)
T TIGR00735 188 LELTKAVSEA-----VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAE 248 (254)
T ss_pred HHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHH
Confidence 6888888864 368999999999999999999988 998544 45777777776653
No 261
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=42.58 E-value=3e+02 Score=33.95 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=65.3
Q ss_pred CCeEEEEeCCH---H-HHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcC-------
Q 042553 998 GKKILVADDSM---M-LRRVAEINLRHL-GATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDC------- 1063 (1131)
Q Consensus 998 ~~~ILvvdD~~---~-~~~~l~~~L~~~-g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi------- 1063 (1131)
+..|+++|-.. . .+..++.+=+.. +..+. -+.+.++|..+++. ..|.|.+-+
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a--------------GaD~i~vg~g~G~~~~ 325 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA--------------GVDGLRVGMGSGSICT 325 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc--------------CcCEEEECCCCCcccc
Confidence 44577777543 1 223444443444 35554 37899999999875 478886632
Q ss_pred -------CCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1064 -------EMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1064 -------~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..|...-+..+.++.+. ..+|||+=.+-....+..+|+.+||+..+.
T Consensus 326 t~~~~~~g~~~~~~i~~~~~~~~~-----~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 326 TQEVCAVGRGQATAVYKVASIAAQ-----HGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred CccccccCCCcccHHHHHHHHHHh-----cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 22333445555555542 258999999999999999999999998754
No 262
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.48 E-value=2.5e+02 Score=33.45 Aligned_cols=107 Identities=10% Similarity=0.036 Sum_probs=61.6
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC--HHH
Q 042553 998 GKKILVADDSMM---LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN--GYE 1072 (1131)
Q Consensus 998 ~~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md--G~e 1072 (1131)
+.+|.+++-|+- ....++.+-+..|+.+..+.+..+..+.+.... ....+|+||+|.- +.+ --+
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~---------~~~~~D~VLIDTA--Gr~~~d~~ 302 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT---------YVNCVDHILIDTV--GRNYLAEE 302 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH---------hcCCCCEEEEECC--CCCccCHH
Confidence 567888887753 234556666667877777778776655544310 0025899999974 331 233
Q ss_pred HHHHHhhhhccCCCCccEEEEcccCCHHHHHHHH----HcCCCEEEE
Q 042553 1073 ATRKIREEEKRNQVHIPIIALTAHISGEEADKTI----EAGMDVHLG 1115 (1131)
Q Consensus 1073 ~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL~ 1115 (1131)
.+..++.......++..++++++.....+....+ ..|.+++|.
T Consensus 303 ~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~ 349 (407)
T PRK12726 303 SVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFII 349 (407)
T ss_pred HHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEE
Confidence 4444544332223444466677766666655544 356676643
No 263
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=42.11 E-value=1.4e+02 Score=31.24 Aligned_cols=35 Identities=6% Similarity=-0.013 Sum_probs=28.0
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
++++++++...+..+...++..|+.+..+.+....
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~ 36 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREA 36 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHH
Confidence 47788888888999999999999888776665543
No 264
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=41.87 E-value=1e+02 Score=32.64 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=28.6
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
+++++++++..+..+...++..|+.+..+.+....
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~ 37 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQA 37 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHH
Confidence 57889999999999999999999988776665543
No 265
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.78 E-value=2.1e+02 Score=31.03 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=61.2
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEc
Q 042553 1016 INLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALT 1094 (1131)
Q Consensus 1016 ~~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalT 1094 (1131)
..|.+.+. -|....+.++|+...+.-. .-.+=++.+.|-.-+.++++++||+... ..+++ +|..-
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~------------~~Gi~~iEit~~~~~a~~~i~~l~~~~~-~~p~~-~vGaG 73 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI------------KGGIKAIEVTYTNPFASEVIKELVELYK-DDPEV-LIGAG 73 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH------------HCCCCEEEEECCCccHHHHHHHHHHHcC-CCCCe-EEeee
Confidence 45555554 4666778888887765421 1224456667777789999999987521 01122 34444
Q ss_pred ccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1095 a~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
.-.+.++.+++.++|++ |+.-|.--.++.+..+
T Consensus 74 TV~~~~~~~~a~~aGA~-FivsP~~~~~v~~~~~ 106 (213)
T PRK06552 74 TVLDAVTARLAILAGAQ-FIVSPSFNRETAKICN 106 (213)
T ss_pred eCCCHHHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 44567888999999998 5555766556655544
No 266
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=41.46 E-value=1.4e+02 Score=36.91 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=62.8
Q ss_pred CCeEEEEeCCHHH----HHHHHHHHHhCC--CEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEE--------
Q 042553 998 GKKILVADDSMML----RRVAEINLRHLG--ATVEA--CENGEAALQLVRSGLNDQRDLGAPHILPYDYILM-------- 1061 (1131)
Q Consensus 998 ~~~ILvvdD~~~~----~~~l~~~L~~~g--~~v~~--a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILm-------- 1061 (1131)
|..+++||-.+-. .+.++.+-+..+ ..|.. +.+.+.|.+++..+ .|.|.+
T Consensus 254 Gvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aG--------------Ad~I~vg~g~Gs~c 319 (502)
T PRK07107 254 GADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAG--------------ADFVKVGIGGGSIC 319 (502)
T ss_pred CCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcC--------------CCEEEECCCCCcCc
Confidence 5567777744332 344444444444 44544 67888888888753 566544
Q ss_pred ------cCCCCCCCHHHHHHH-HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1062 ------DCEMPIMNGYEATRK-IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1062 ------Di~MP~mdG~e~~r~-IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++-.|..+-+.-+.. .|+..+..+.++|||+=.+--...+..+|+.+|||..+.
T Consensus 320 ~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 320 ITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 444444433332222 222111223358999999988899999999999998754
No 267
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=41.25 E-value=1.1e+02 Score=33.17 Aligned_cols=55 Identities=25% Similarity=0.247 Sum_probs=42.2
Q ss_pred cc-EEEEcCCCCCC-CH--HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcC-CCEEEE
Q 042553 1056 YD-YILMDCEMPIM-NG--YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG-MDVHLG 1115 (1131)
Q Consensus 1056 ~D-lILmDi~MP~m-dG--~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~ 1115 (1131)
++ ++++|+..-++ .| +++++++++. ..+|||+-.+-.+.++..++++.| +++.+.
T Consensus 160 ~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-----~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 160 VKAIIYTDISRDGTLSGPNVEATRELAAA-----VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCEEEEeeecCcCCcCCCCHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 45 77777754332 34 6888888764 258999999989999999999998 999875
No 268
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=41.24 E-value=1.2e+02 Score=32.00 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=28.7
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
+++++++++..+..+...++..|+.+..+.++...
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 37 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRG 37 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHH
Confidence 57888999999999999999999988777665543
No 269
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=41.18 E-value=2.2e+02 Score=35.05 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=61.3
Q ss_pred CCeEEEEeC----CHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEc--------
Q 042553 998 GKKILVADD----SMMLRRVAEINLRHL-GATVEA--CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMD-------- 1062 (1131)
Q Consensus 998 ~~~ILvvdD----~~~~~~~l~~~L~~~-g~~v~~--a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmD-------- 1062 (1131)
+..++.+|- .....+.++.+-+.. +..+.. +.+.++|..++.. ..|.|.+.
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a--------------Gad~I~vg~g~Gs~~~ 318 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA--------------GADGLRIGMGSGSICI 318 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc--------------CCCEEEECCcCCcccc
Confidence 456788774 333344455444443 334433 6677777777765 36776543
Q ss_pred ------CCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1063 ------CEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1063 ------i~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+..|. +.++..+++..+ ...+|||+=.+-..+.+..+|+.+||+..+.
T Consensus 319 t~~~~~~g~p~---~~ai~~~~~~~~--~~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 319 TQEVCAVGRPQ---ASAVYHVARYAR--ERGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred cchhccCCCCh---HHHHHHHHHHHh--hcCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 33443 344444443322 1258999888888899999999999998754
No 270
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.12 E-value=1e+02 Score=35.12 Aligned_cols=70 Identities=23% Similarity=0.250 Sum_probs=46.4
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHH
Q 042553 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104 (1131)
Q Consensus 1025 v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~ 1104 (1131)
-..+.|.+||.+++.. .+|+|.+| .|...+=-++++.+|+. .+++|+. .++.-..+...+
T Consensus 200 ~VEv~tleea~eA~~~--------------GaD~I~LD-n~~~e~l~~av~~~~~~----~~~i~le-AsGGIt~~ni~~ 259 (288)
T PRK07428 200 EVETETLEQVQEALEY--------------GADIIMLD-NMPVDLMQQAVQLIRQQ----NPRVKIE-ASGNITLETIRA 259 (288)
T ss_pred EEECCCHHHHHHHHHc--------------CCCEEEEC-CCCHHHHHHHHHHHHhc----CCCeEEE-EECCCCHHHHHH
Confidence 3467999999999875 58999999 33322222333444432 2356654 455567888888
Q ss_pred HHHcCCCEEE
Q 042553 1105 TIEAGMDVHL 1114 (1131)
Q Consensus 1105 ~l~aG~d~yL 1114 (1131)
..+.|+|...
T Consensus 260 ya~tGvD~Is 269 (288)
T PRK07428 260 VAETGVDYIS 269 (288)
T ss_pred HHHcCCCEEE
Confidence 9999999764
No 271
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=41.11 E-value=1.7e+02 Score=30.63 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=29.4
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLH 739 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~ 739 (1131)
.+++++++++..+..+...++..|+.+..+.+..+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~ 39 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEAL 39 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHH
Confidence 4688889999999999999998999887766665443
No 272
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=40.83 E-value=1.4e+02 Score=31.15 Aligned_cols=81 Identities=25% Similarity=0.254 Sum_probs=55.5
Q ss_pred HHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCC-------CHHHHHHHHhhhhccCCC
Q 042553 1014 AEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM-------NGYEATRKIREEEKRNQV 1086 (1131)
Q Consensus 1014 l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~m-------dG~e~~r~IR~~~~~~~~ 1086 (1131)
.+..+.....--..|.+.+|+.++.+. .+|.|+.----|-. -|++..+++++..
T Consensus 88 ~r~~~~~~~~ig~S~h~~~e~~~a~~~--------------g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~----- 148 (180)
T PF02581_consen 88 ARKLLGPDKIIGASCHSLEEAREAEEL--------------GADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS----- 148 (180)
T ss_dssp HHHHHTTTSEEEEEESSHHHHHHHHHC--------------TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT-----
T ss_pred hhhhcccceEEEeecCcHHHHHHhhhc--------------CCCEEEECCccCCCCCccccccCHHHHHHHHHhC-----
Confidence 344455444455678999997777654 57999987665433 4899888888652
Q ss_pred CccEEEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1087 HIPIIALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1087 ~ipIIalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
++||+++-+- +.+....+.++|++++-
T Consensus 149 ~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 149 PIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp SSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred CCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 4899999886 45667788999999864
No 273
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=40.82 E-value=2.1e+02 Score=31.37 Aligned_cols=83 Identities=25% Similarity=0.220 Sum_probs=60.0
Q ss_pred HHHHHHHhCCCEEEEECC--HHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHH-----HHHHHHhhhhccCC
Q 042553 1013 VAEINLRHLGATVEACEN--GEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGY-----EATRKIREEEKRNQ 1085 (1131)
Q Consensus 1013 ~l~~~L~~~g~~v~~a~n--g~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~-----e~~r~IR~~~~~~~ 1085 (1131)
...+.|-+.||.|....+ .--|-++..-+ ...+|=+.-|.-.|. ..++.|++.
T Consensus 121 ~Aae~Lv~eGF~VlPY~~dD~v~arrLee~G---------------caavMPl~aPIGSg~G~~n~~~l~iiie~----- 180 (262)
T COG2022 121 KAAEQLVKEGFVVLPYTTDDPVLARRLEEAG---------------CAAVMPLGAPIGSGLGLQNPYNLEIIIEE----- 180 (262)
T ss_pred HHHHHHHhCCCEEeeccCCCHHHHHHHHhcC---------------ceEeccccccccCCcCcCCHHHHHHHHHh-----
Confidence 455677888999876543 33333332221 357888888877764 457777764
Q ss_pred CCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1086 VHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1086 ~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.++|||+=.+-..+.+...+++.|+|+.|.
T Consensus 181 a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 181 ADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred CCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 279999999999999999999999999975
No 274
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=40.78 E-value=1.9e+02 Score=31.16 Aligned_cols=94 Identities=19% Similarity=0.161 Sum_probs=55.4
Q ss_pred HHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcc
Q 042553 1017 NLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTA 1095 (1131)
Q Consensus 1017 ~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa 1095 (1131)
.|.+.+. -|....+.++|++..+.-. ...+++|=+ .|-.-+.+++++++|+.. +++.|-+=|
T Consensus 4 ~l~~~~liaVlr~~~~e~a~~~~~al~----------~~Gi~~iEi--t~~t~~a~~~i~~l~~~~----~~~~vGAGT- 66 (204)
T TIGR01182 4 LLREAKIVPVIRIDDVDDALPLAKALI----------EGGLRVLEV--TLRTPVALDAIRLLRKEV----PDALIGAGT- 66 (204)
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHHH----------HcCCCEEEE--eCCCccHHHHHHHHHHHC----CCCEEEEEe-
Confidence 3444443 3555667777777665321 113554433 444556888999998642 244333333
Q ss_pred cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1096 HISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1096 ~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
-.+.++.+++.++|++ |+.-|..-.++.+..+
T Consensus 67 Vl~~~~a~~a~~aGA~-FivsP~~~~~v~~~~~ 98 (204)
T TIGR01182 67 VLNPEQLRQAVDAGAQ-FIVSPGLTPELAKHAQ 98 (204)
T ss_pred CCCHHHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 4567888899999998 4555655555555444
No 275
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.51 E-value=1.1e+02 Score=34.74 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=49.6
Q ss_pred EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHH
Q 042553 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD 1103 (1131)
Q Consensus 1024 ~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~ 1103 (1131)
....+.+-+||.+++.. ..|+|++| +|+.-+=-++++.+|+. .+++ .|..++.-..+...
T Consensus 202 IeVEv~tl~ea~eal~~--------------gaDiI~LD-nm~~e~vk~av~~~~~~----~~~v-~ieaSGGI~~~ni~ 261 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAE--------------GAELVLLD-NFPVWQTQEAVQRRDAR----APTV-LLESSGGLTLDTAA 261 (289)
T ss_pred EEEEcCCHHHHHHHHHc--------------CCCEEEeC-CCCHHHHHHHHHHHhcc----CCCE-EEEEECCCCHHHHH
Confidence 45568999999999875 48999999 45432223334433332 2233 67788888899998
Q ss_pred HHHHcCCCEEE
Q 042553 1104 KTIEAGMDVHL 1114 (1131)
Q Consensus 1104 ~~l~aG~d~yL 1114 (1131)
...+.|+|.+.
T Consensus 262 ~yA~tGvD~Is 272 (289)
T PRK07896 262 AYAETGVDYLA 272 (289)
T ss_pred HHHhcCCCEEE
Confidence 99999998763
No 276
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=39.85 E-value=1.2e+02 Score=33.20 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=51.8
Q ss_pred ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC-H--HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHH
Q 042553 1028 CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN-G--YEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104 (1131)
Q Consensus 1028 a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md-G--~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~ 1104 (1131)
..+..+.++.+... .-.++++|+..-++. | +++++.+.+. ..+||++-.+-.+.++..+
T Consensus 145 ~~~~~~~~~~~~~~-------------~~~li~~di~~~G~~~g~~~~~~~~i~~~-----~~ipvi~~GGi~s~edi~~ 206 (233)
T cd04723 145 FIGPEELLRRLAKW-------------PEELIVLDIDRVGSGQGPDLELLERLAAR-----ADIPVIAAGGVRSVEDLEL 206 (233)
T ss_pred cCCHHHHHHHHHHh-------------CCeEEEEEcCccccCCCcCHHHHHHHHHh-----cCCCEEEeCCCCCHHHHHH
Confidence 34566666766642 124899999875532 2 6777888753 3689999999999999999
Q ss_pred HHHcCCCEEEE
Q 042553 1105 TIEAGMDVHLG 1115 (1131)
Q Consensus 1105 ~l~aG~d~yL~ 1115 (1131)
++++|++..+.
T Consensus 207 l~~~G~~~viv 217 (233)
T cd04723 207 LKKLGASGALV 217 (233)
T ss_pred HHHcCCCEEEE
Confidence 99999998874
No 277
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.67 E-value=3.1e+02 Score=31.02 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=53.2
Q ss_pred HHHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCcc
Q 042553 1013 VAEINLRHLGA---TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP 1089 (1131)
Q Consensus 1013 ~l~~~L~~~g~---~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ip 1089 (1131)
.++.+-++.++ -...+.+-+||.+++.. .+|+|.+|= |+ ++.++++-+..+...+++
T Consensus 171 ~v~~~k~~~p~~~~I~VEv~tleea~~A~~~--------------GaDiI~LDn----~~-~e~l~~~v~~~~~~~~~~- 230 (273)
T PRK05848 171 FIQHARKNIPFTAKIEIECESLEEAKNAMNA--------------GADIVMCDN----MS-VEEIKEVVAYRNANYPHV- 230 (273)
T ss_pred HHHHHHHhCCCCceEEEEeCCHHHHHHHHHc--------------CCCEEEECC----CC-HHHHHHHHHHhhccCCCe-
Confidence 34444444543 24468999999999975 489999884 23 333333332211112343
Q ss_pred EEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1090 IIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1090 IIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+|..++.-.++...++.+.|+|.+.+
T Consensus 231 ~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 231 LLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 56678888999999999999997643
No 278
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=39.15 E-value=1.7e+02 Score=31.53 Aligned_cols=37 Identities=3% Similarity=0.224 Sum_probs=26.9
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHc-CCe-eeecccHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENL-GIN-VSAVSRWERLH 739 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~-g~~-~~~~~~~~~l~ 739 (1131)
.++++++|++..+..+...++.. |+. +..+.+..+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al 43 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQAR 43 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHH
Confidence 46889999999998888898864 674 45566655443
No 279
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=39.09 E-value=40 Score=35.95 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=48.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCC-CHHH---HHHH
Q 042553 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM-NGYE---ATRK 1076 (1131)
Q Consensus 1001 ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~m-dG~e---~~r~ 1076 (1131)
|||||.+...-..+...|++.|+++.+..+.+..++.+.. ..||.|++- |+- +=.+ ..+.
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~-------------~~~d~iIls---gGP~~p~~~~~~~~~ 65 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN-------------MKPDFLMIS---PGPCSPNEAGISMEV 65 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh-------------CCCCEEEEC---CCCCChHhCCCchHH
Confidence 8999999998888999999999999888766444444433 257877762 221 1111 2333
Q ss_pred HhhhhccCCCCccEEEEc
Q 042553 1077 IREEEKRNQVHIPIIALT 1094 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalT 1094 (1131)
+|... ..+||+.+.
T Consensus 66 i~~~~----~~~PvLGIC 79 (195)
T PRK07649 66 IRYFA----GKIPIFGVC 79 (195)
T ss_pred HHHhc----CCCCEEEEc
Confidence 44321 257998876
No 280
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=38.74 E-value=1.3e+02 Score=34.97 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=32.4
Q ss_pred CCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 701 EGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 701 ~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
.-..+++++|.+..+..+...|+..|+++..+..++..
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a 50 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEA 50 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHH
Confidence 34568888888999999999999999999999888743
No 281
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=38.57 E-value=96 Score=32.75 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=46.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCE---EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH---HH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGAT---VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG---YE 1072 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~---v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG---~e 1072 (1131)
.+|..||-++.....++.-++..+.. .....|...++...... ..+||+|++|- |-..+ .+
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~-----------~~~fDiIflDP--PY~~~~~~~~ 132 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKK-----------GEKFDIIFLDP--PYAKGLYYEE 132 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHC-----------TS-EEEEEE----STTSCHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhccc-----------CCCceEEEECC--CcccchHHHH
Confidence 57999999999999999999988843 44567888888766421 14799999993 54443 44
Q ss_pred HHHHHhh
Q 042553 1073 ATRKIRE 1079 (1131)
Q Consensus 1073 ~~r~IR~ 1079 (1131)
++..|.+
T Consensus 133 ~l~~l~~ 139 (183)
T PF03602_consen 133 LLELLAE 139 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 282
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=38.49 E-value=34 Score=42.51 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.6
Q ss_pred EEEEEecCCCCCcchHhhhccCCeec
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYVQV 593 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~q~ 593 (1131)
.|+|+|+|+||++...+-+-..++..
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~TS 76 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHTTS 76 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhhhh
Confidence 58999999999999998887777764
No 283
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=38.30 E-value=89 Score=34.90 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCCEEEECCCCHHHH
Q 042553 1100 EEADKTIEAGMDVHLGKPLNRDHL 1123 (1131)
Q Consensus 1100 ~~~~~~l~aG~d~yL~KP~~~~~L 1123 (1131)
....+|.++|+|+.+.=....++.
T Consensus 106 ~f~~~~~~aGvdgviipDlp~ee~ 129 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADLPLEES 129 (256)
T ss_pred HHHHHHHHcCCCEEEECCCChHHH
Confidence 334455555555555444443333
No 284
>PRK09191 two-component response regulator; Provisional
Probab=38.24 E-value=1.4e+02 Score=32.74 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=26.7
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeee-ecccHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVS-AVSRWE 736 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~ 736 (1131)
.++++++++...+..+...++..|+.+. .+.+..
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~ 172 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRA 172 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHH
Confidence 4688899999999999999999998876 344433
No 285
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.70 E-value=1.9e+02 Score=31.04 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=39.8
Q ss_pred EEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1060 LMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1060 LmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
.+.+.|-.-+.+++++++|+.. +++ +|..-.-.+.++.+++.++|++ |+.-|.--.++.+..+
T Consensus 32 ~iEit~~tp~a~~~I~~l~~~~----~~~-~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~~a~ 94 (201)
T PRK06015 32 AIEITLRTPAALDAIRAVAAEV----EEA-IVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLAAAN 94 (201)
T ss_pred EEEEeCCCccHHHHHHHHHHHC----CCC-EEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 4455555667888888887642 232 3444334567888899999998 5555655555555444
No 286
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=37.58 E-value=4.2e+02 Score=28.68 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=53.4
Q ss_pred HHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-------CCHHHHHHHHhhhhccCCCCc
Q 042553 1017 NLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-------MNGYEATRKIREEEKRNQVHI 1088 (1131)
Q Consensus 1017 ~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-------mdG~e~~r~IR~~~~~~~~~i 1088 (1131)
.+++.+..+. .+.+.+++..+.+. ..|.|+.+-.-++ ...+++++++|+. ..+
T Consensus 97 ~~~~~~i~~i~~v~~~~~~~~~~~~--------------gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~-----~~~ 157 (236)
T cd04730 97 RLKAAGIKVIPTVTSVEEARKAEAA--------------GADALVAQGAEAGGHRGTFDIGTFALVPEVRDA-----VDI 157 (236)
T ss_pred HHHHcCCEEEEeCCCHHHHHHHHHc--------------CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH-----hCC
Confidence 3444565544 34566665554432 4788877542111 2467788888864 258
Q ss_pred cEEEEcccCCHHHHHHHHHcCCCEEEEC
Q 042553 1089 PIIALTAHISGEEADKTIEAGMDVHLGK 1116 (1131)
Q Consensus 1089 pIIalTa~~~~~~~~~~l~aG~d~yL~K 1116 (1131)
||++.-+-...++..+++++|+|+.+.-
T Consensus 158 Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 158 PVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred CEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 9999888777789999999999988653
No 287
>PRK01362 putative translaldolase; Provisional
Probab=37.23 E-value=1.8e+02 Score=31.58 Aligned_cols=88 Identities=23% Similarity=0.205 Sum_probs=59.7
Q ss_pred HHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEE--EE-cCCCCCCCHHHHHHHHhhhhccCCCCc
Q 042553 1014 AEINLRHLGAT--VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI--LM-DCEMPIMNGYEATRKIREEEKRNQVHI 1088 (1131)
Q Consensus 1014 l~~~L~~~g~~--v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlI--Lm-Di~MP~mdG~e~~r~IR~~~~~~~~~i 1088 (1131)
....|++.|.. ++.+-+..||+...+.+ .+.| ++ -+.=.+.||+++++++++.-+..+.++
T Consensus 93 a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG--------------a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~t 158 (214)
T PRK01362 93 AVKALSKEGIKTNVTLIFSANQALLAAKAG--------------ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDT 158 (214)
T ss_pred HHHHHHHCCCceEEeeecCHHHHHHHHhcC--------------CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCc
Confidence 34567777864 56788999999988753 2222 11 111236799999999988765555566
Q ss_pred cEEEEcccCCHHHHHHHHHcCCCEEEECC
Q 042553 1089 PIIALTAHISGEEADKTIEAGMDVHLGKP 1117 (1131)
Q Consensus 1089 pIIalTa~~~~~~~~~~l~aG~d~yL~KP 1117 (1131)
.|++-+-+ ...+..++..+|+| +++=|
T Consensus 159 kilaAS~r-~~~~v~~~~~~G~d-~iTi~ 185 (214)
T PRK01362 159 EIIAASVR-HPMHVLEAALAGAD-IATIP 185 (214)
T ss_pred EEEEeecC-CHHHHHHHHHcCCC-EEecC
Confidence 66655544 57778889999999 66644
No 288
>PRK13856 two-component response regulator VirG; Provisional
Probab=37.06 E-value=2.1e+02 Score=30.75 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=29.9
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLH 739 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~ 739 (1131)
+++++++++..+..+...++..|+.+..+.+.....
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~ 38 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFN 38 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHH
Confidence 578899999999999999999999988877765543
No 289
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=36.94 E-value=1.9e+02 Score=30.49 Aligned_cols=35 Identities=9% Similarity=0.126 Sum_probs=28.1
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
++++++++...+..+...++..|+.+..+.+..+.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~ 36 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSA 36 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHH
Confidence 47888899988999999999999988776655543
No 290
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=36.65 E-value=2e+02 Score=32.41 Aligned_cols=92 Identities=20% Similarity=0.178 Sum_probs=57.5
Q ss_pred EEEEeCCHHHHH----HHHHHHHhCCCEE---EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHH
Q 042553 1001 ILVADDSMMLRR----VAEINLRHLGATV---EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073 (1131)
Q Consensus 1001 ILvvdD~~~~~~----~l~~~L~~~g~~v---~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~ 1073 (1131)
|||=|.|-...- .++..=+..++.. +.+++.+|+.+++.. .+|+|++|-+-| -.=-++
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a--------------gaDiImLDNm~~-e~~~~a 225 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA--------------GADIIMLDNMSP-EELKEA 225 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc--------------CCCEEEecCCCH-HHHHHH
Confidence 555444443333 3333333446532 468999999999986 489999994333 222333
Q ss_pred HHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEE
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y 1113 (1131)
.+.++ . ..-.++-.|+.-..+......+.|+|-+
T Consensus 226 v~~l~-~-----~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 226 VKLLG-L-----AGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred HHHhc-c-----CCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 33331 1 1234777899999999988889999854
No 291
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.47 E-value=59 Score=27.85 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=27.2
Q ss_pred HchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHH
Q 042553 376 NASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDL 419 (1131)
Q Consensus 376 ~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~L 419 (1131)
.--||+.+=|..|.|++++= ..++..+++..+.......
T Consensus 18 ~~RHD~~NhLqvI~gllqlg-----~~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 18 AQRHDFLNHLQVIYGLLQLG-----KYEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHH
Confidence 34599999999999998862 1245666777666555544
No 292
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=36.17 E-value=2e+02 Score=34.68 Aligned_cols=105 Identities=10% Similarity=0.062 Sum_probs=55.2
Q ss_pred CCCeEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHH-------HHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC
Q 042553 997 RGKKILVADDSMM---LRRVAEINLRHLGATVEACENGE-------AALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP 1066 (1131)
Q Consensus 997 ~~~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~-------eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP 1066 (1131)
.|.+|+||+-|+- ....++.+-+..+..+....++. ++++.++. ..||+||+|.-=-
T Consensus 127 ~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~-------------~~~DvViIDTaGr 193 (429)
T TIGR01425 127 KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK-------------ENFDIIIVDTSGR 193 (429)
T ss_pred CCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh-------------CCCCEEEEECCCC
Confidence 3668998887752 23333444455666655544322 34554443 2699999997421
Q ss_pred CCCHHHHHHHHhhhhccCCCCccEEEEcccCCH--HHHHHHHH--cCCCEEE
Q 042553 1067 IMNGYEATRKIREEEKRNQVHIPIIALTAHISG--EEADKTIE--AGMDVHL 1114 (1131)
Q Consensus 1067 ~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~--~~~~~~l~--aG~d~yL 1114 (1131)
.-.--++++++++......++-.++++.+.... ....+++. .|.++.+
T Consensus 194 ~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~I 245 (429)
T TIGR01425 194 HKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVI 245 (429)
T ss_pred CcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEE
Confidence 112224556665543333444456666654332 33445553 4666553
No 293
>CHL00148 orf27 Ycf27; Reviewed
Probab=36.04 E-value=2.3e+02 Score=30.13 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=28.4
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
.++++++++...+..+...++..|+.+..+.+....
T Consensus 7 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~ 42 (240)
T CHL00148 7 EKILVVDDEAYIRKILETRLSIIGYEVITASDGEEA 42 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHH
Confidence 468889999998888999999889888766555443
No 294
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=36.03 E-value=4.5e+02 Score=32.27 Aligned_cols=101 Identities=20% Similarity=0.160 Sum_probs=62.2
Q ss_pred CCeEEEEeCC-H---HHHHHHHHHHHhC-CCE--EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC---
Q 042553 998 GKKILVADDS-M---MLRRVAEINLRHL-GAT--VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI--- 1067 (1131)
Q Consensus 998 ~~~ILvvdD~-~---~~~~~l~~~L~~~-g~~--v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~--- 1067 (1131)
+..++++|.. . -....++.+-++. +.. +-.+.+.++|..+... ..|.|-.-+ -|+
T Consensus 240 gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a--------------Gad~i~vg~-g~gs~~ 304 (486)
T PRK05567 240 GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA--------------GADAVKVGI-GPGSIC 304 (486)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc--------------CCCEEEECC-CCCccc
Confidence 4568888864 1 2223333333343 333 3346788888888875 366665422 121
Q ss_pred ---------CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1068 ---------MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1068 ---------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..-++++..+++... ...+|||+=.+-..+.+..+|+.+|||..+.
T Consensus 305 ~~r~~~~~g~p~~~~~~~~~~~~~--~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 305 TTRIVAGVGVPQITAIADAAEAAK--KYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred cceeecCCCcCHHHHHHHHHHHhc--cCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 113556666655322 2358999988888899999999999998753
No 295
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.07 E-value=3.5e+02 Score=32.23 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=62.4
Q ss_pred CCCeEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-CCCHHH
Q 042553 997 RGKKILVADDSMM---LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-IMNGYE 1072 (1131)
Q Consensus 997 ~~~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-~mdG~e 1072 (1131)
.+.+|.++.-|.- ....++.+.+..|..+..+.+..+....+... ..+|+||+|.--- ..|-..
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~------------~~~DlVLIDTaGr~~~~~~~ 272 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS------------KDFDLVLVDTIGKSPKDFMK 272 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh------------CCCCEEEEcCCCCCccCHHH
Confidence 3568888887762 22345566666788888888776655555442 2699999996421 123332
Q ss_pred HHHHHhhhhccCCCC-ccEEEEcccCCHHHHHHHHH----cCCCEEE
Q 042553 1073 ATRKIREEEKRNQVH-IPIIALTAHISGEEADKTIE----AGMDVHL 1114 (1131)
Q Consensus 1073 ~~r~IR~~~~~~~~~-ipIIalTa~~~~~~~~~~l~----aG~d~yL 1114 (1131)
+.++++.-....++ -.+++|++.....+..+.++ .|.++++
T Consensus 273 -l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I 318 (388)
T PRK12723 273 -LAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVI 318 (388)
T ss_pred -HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 33343332211222 36788888887777665543 4566664
No 296
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=35.00 E-value=1.4e+02 Score=32.12 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=44.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGA--TVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE 1064 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~--~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~ 1064 (1131)
+.+|.-+|-++...+..+.++++.|+ .+. ...++.+.+..+.... ...+||+||+|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~---------~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG---------EEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT---------TTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc---------CCCceeEEEEccc
Confidence 35899999999999999999999886 243 4578888888776421 0137999999985
No 297
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=34.99 E-value=3.6e+02 Score=30.58 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=40.4
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCE------EEECCCCHHHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDV------HLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~------yL~KP~~~~~L~~~I~~ 1129 (1131)
++.++++++. ..+|||+..+-.+.++..+++.+|||. ++.+|--..++.+-+++
T Consensus 223 l~~v~~i~~~-----~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~ 282 (300)
T TIGR01037 223 LRMVYDVYKM-----VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIA 282 (300)
T ss_pred HHHHHHHHhc-----CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHH
Confidence 3566677653 358999999999999999999999997 46778555555555543
No 298
>PRK13435 response regulator; Provisional
Probab=34.86 E-value=1.8e+02 Score=28.47 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=26.0
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeee-ecccHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVS-AVSRWER 737 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~ 737 (1131)
.++++++++......+...+...|+.+. .+.+...
T Consensus 6 ~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 41 (145)
T PRK13435 6 LKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQ 41 (145)
T ss_pred ceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHH
Confidence 4678888888888888889988888865 4444433
No 299
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=34.80 E-value=33 Score=30.52 Aligned_cols=52 Identities=13% Similarity=0.339 Sum_probs=38.2
Q ss_pred ceEEEeeeecCC----CceEEecccccccccccceeee-cCcEEEEEecCceEEEec
Q 042553 180 ALFLNTAGINGT----RGAVSLGFPVKPITNLFAGINL-YGGRLSIATNDGKVLVQG 231 (1131)
Q Consensus 180 ~~~~~~~~~~~~----~g~~~~g~~~~~i~~~~~~~~~-~~~~~~~~~~~g~~l~~~ 231 (1131)
.++..++.+-+. .|++.+.+..+.|.+.+..+.. .+|+.|+.+.+|++++++
T Consensus 13 ~vi~~s~pi~~~~g~~~Gvv~~di~l~~l~~~i~~~~~~~~g~~~ivd~~G~ii~hp 69 (81)
T PF02743_consen 13 PVITISVPIYDDDGKIIGVVGIDISLDQLSEIISNIKFGNNGYAFIVDKNGTIIAHP 69 (81)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEEEHHHHHHHHTTSBBTTTBEEEEEETTSBBCE-S
T ss_pred EEEEEEEEEECCCCCEEEEEEEEeccceeeeEEEeeEECCCEEEEEEECCCCEEEeC
Confidence 445555555432 3677777888889998888776 667899999999999974
No 300
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=34.76 E-value=1.4e+02 Score=33.79 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=51.5
Q ss_pred EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHH
Q 042553 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD 1103 (1131)
Q Consensus 1024 ~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~ 1103 (1131)
....+.+-+||.++++. .+|+|++| +|+..+=-++.+.+++. .++ .++..++.-..+...
T Consensus 192 IeVEv~tleqa~ea~~a--------------gaDiI~LD-n~~~e~l~~av~~~~~~----~~~-~~leaSGGI~~~ni~ 251 (284)
T PRK06096 192 IVVEADTPKEAIAALRA--------------QPDVLQLD-KFSPQQATEIAQIAPSL----APH-CTLSLAGGINLNTLK 251 (284)
T ss_pred EEEECCCHHHHHHHHHc--------------CCCEEEEC-CCCHHHHHHHHHHhhcc----CCC-eEEEEECCCCHHHHH
Confidence 34567899999999975 48999999 55544444555555432 123 467888999999998
Q ss_pred HHHHcCCCEEE
Q 042553 1104 KTIEAGMDVHL 1114 (1131)
Q Consensus 1104 ~~l~aG~d~yL 1114 (1131)
...+.|+|-..
T Consensus 252 ~yA~tGvD~Is 262 (284)
T PRK06096 252 NYADCGIRLFI 262 (284)
T ss_pred HHHhcCCCEEE
Confidence 89999998753
No 301
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=34.33 E-value=3e+02 Score=29.66 Aligned_cols=96 Identities=11% Similarity=0.136 Sum_probs=55.8
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEc
Q 042553 1016 INLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALT 1094 (1131)
Q Consensus 1016 ~~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalT 1094 (1131)
..|++.+. -|....+.+++++.++.-. .-.+=++.+.|-.-++.+.++.|++.. +.--+|..-
T Consensus 5 ~~l~~~~~~~v~r~~~~~~~~~~~~a~~------------~gGi~~iEvt~~~~~~~~~i~~l~~~~----~~~~~iGaG 68 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALI------------EAGFRAIEIPLNSPDPFDSIAALVKAL----GDRALIGAG 68 (206)
T ss_pred hHHHhCCEEEEEeCCCHHHHHHHHHHHH------------HCCCCEEEEeCCCccHHHHHHHHHHHc----CCCcEEeEE
Confidence 34445453 3555667777777665421 112234555666668888888887642 111133333
Q ss_pred ccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1095 a~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
.-...++...|+++|++..++ |....++.+..+
T Consensus 69 TV~~~~~~~~a~~aGA~fivs-p~~~~~v~~~~~ 101 (206)
T PRK09140 69 TVLSPEQVDRLADAGGRLIVT-PNTDPEVIRRAV 101 (206)
T ss_pred ecCCHHHHHHHHHcCCCEEEC-CCCCHHHHHHHH
Confidence 345578888999999975555 755555555443
No 302
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=34.07 E-value=4.6e+02 Score=27.96 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=51.9
Q ss_pred HHHhCCCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcC------CCCCCCHHHHHHHHhhhhccCCCCcc
Q 042553 1017 NLRHLGATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDC------EMPIMNGYEATRKIREEEKRNQVHIP 1089 (1131)
Q Consensus 1017 ~L~~~g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi------~MP~mdG~e~~r~IR~~~~~~~~~ip 1089 (1131)
.+++.+.-+ --+++.+||+...+- .+|+|=.=+ ..+...-+++++++++. .+|
T Consensus 87 ~i~~~~~l~MADist~ee~~~A~~~--------------G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~------~~p 146 (192)
T PF04131_consen 87 EIKEKYQLVMADISTLEEAINAAEL--------------GFDIIGTTLSGYTPYTKGDGPDFELVRELVQA------DVP 146 (192)
T ss_dssp HHHHCTSEEEEE-SSHHHHHHHHHT--------------T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT------TSE
T ss_pred HHHHhCcEEeeecCCHHHHHHHHHc--------------CCCEEEcccccCCCCCCCCCCCHHHHHHHHhC------CCc
Confidence 334444332 347899999998875 478776532 11233458899998863 478
Q ss_pred EEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1090 IIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1090 IIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
||+=-...++++..+|+++|++..+.
T Consensus 147 vIaEGri~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 147 VIAEGRIHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp EEEESS--SHHHHHHHHHTT-SEEEE
T ss_pred EeecCCCCCHHHHHHHHhcCCeEEEE
Confidence 99888888999999999999998864
No 303
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=33.97 E-value=1.3e+02 Score=31.46 Aligned_cols=71 Identities=25% Similarity=0.214 Sum_probs=48.2
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHH
Q 042553 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104 (1131)
Q Consensus 1025 v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~ 1104 (1131)
...+.+.+|+.++++. .+|.|.+|-.-| -+=-++++.+|.. .++ ..|..++.-..+...+
T Consensus 84 ~VEv~~~ee~~ea~~~--------------g~d~I~lD~~~~-~~~~~~v~~l~~~----~~~-v~ie~SGGI~~~ni~~ 143 (169)
T PF01729_consen 84 EVEVENLEEAEEALEA--------------GADIIMLDNMSP-EDLKEAVEELREL----NPR-VKIEASGGITLENIAE 143 (169)
T ss_dssp EEEESSHHHHHHHHHT--------------T-SEEEEES-CH-HHHHHHHHHHHHH----TTT-SEEEEESSSSTTTHHH
T ss_pred EEEcCCHHHHHHHHHh--------------CCCEEEecCcCH-HHHHHHHHHHhhc----CCc-EEEEEECCCCHHHHHH
Confidence 4568899999999986 489999996544 2223334444333 233 6788888888888889
Q ss_pred HHHcCCCEEEE
Q 042553 1105 TIEAGMDVHLG 1115 (1131)
Q Consensus 1105 ~l~aG~d~yL~ 1115 (1131)
..+.|+|.+-+
T Consensus 144 ya~~gvD~isv 154 (169)
T PF01729_consen 144 YAKTGVDVISV 154 (169)
T ss_dssp HHHTT-SEEEE
T ss_pred HHhcCCCEEEc
Confidence 99999987643
No 304
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.87 E-value=4.2e+02 Score=31.70 Aligned_cols=101 Identities=23% Similarity=0.147 Sum_probs=62.0
Q ss_pred CCeEEEEeC---CH-HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC---
Q 042553 998 GKKILVADD---SM-MLRRVAEINLRHL-GATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI--- 1067 (1131)
Q Consensus 998 ~~~ILvvdD---~~-~~~~~l~~~L~~~-g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~--- 1067 (1131)
+..++++|- +. ...+.++.+=++. +..+. -+.+.++|..+++. ..|.|..-+. |+
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a--------------GaD~I~vG~g-~Gs~c 229 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV--------------GADCLKVGIG-PGSIC 229 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc--------------CCCEEEECCC-CCcCC
Confidence 455777764 22 2223333333333 23333 47899999998875 4787775321 21
Q ss_pred ---------CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1068 ---------MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1068 ---------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..-++++..+++... ...+|||+=.+-....+..+|+.+||+.++.
T Consensus 230 ~tr~~~g~g~p~ltai~~v~~~~~--~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 230 TTRIVAGVGVPQITAICDVYEVCK--NTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred cceeecCCCCChHHHHHHHHHHHh--hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 113445544444321 2358999999999999999999999998753
No 305
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=33.84 E-value=1.6e+02 Score=33.12 Aligned_cols=69 Identities=23% Similarity=0.187 Sum_probs=47.3
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHH
Q 042553 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104 (1131)
Q Consensus 1025 v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~ 1104 (1131)
...+.+.+|+.+.+.. .+|+|.+|-.-| +-++++.+.-+.. +++||.+ ++.-..+....
T Consensus 185 ~vev~t~eea~~A~~~--------------gaD~I~ld~~~~-----e~l~~~v~~i~~~-~~i~i~a-sGGIt~~ni~~ 243 (269)
T cd01568 185 EVEVETLEEAEEALEA--------------GADIIMLDNMSP-----EELKEAVKLLKGL-PRVLLEA-SGGITLENIRA 243 (269)
T ss_pred EEecCCHHHHHHHHHc--------------CCCEEEECCCCH-----HHHHHHHHHhccC-CCeEEEE-ECCCCHHHHHH
Confidence 4568899999999875 489999997555 3344433321111 3567554 55567888889
Q ss_pred HHHcCCCEEE
Q 042553 1105 TIEAGMDVHL 1114 (1131)
Q Consensus 1105 ~l~aG~d~yL 1114 (1131)
..++|+|.+.
T Consensus 244 ~a~~Gad~Is 253 (269)
T cd01568 244 YAETGVDVIS 253 (269)
T ss_pred HHHcCCCEEE
Confidence 9999999874
No 306
>PLN02591 tryptophan synthase
Probab=33.74 E-value=1.1e+02 Score=34.08 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=39.0
Q ss_pred CHHHHHHHHhhhhccCCCCccEEEEcccC------CHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1069 NGYEATRKIREEEKRNQVHIPIIALTAHI------SGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1069 dG~e~~r~IR~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
+.++.++++|+. .++|+|+||=.+ .+....+|.++|+|+.|.=.+..++..+...
T Consensus 65 ~~~~~~~~~r~~-----~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~ 125 (250)
T PLN02591 65 SVISMLKEVAPQ-----LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRA 125 (250)
T ss_pred HHHHHHHHHhcC-----CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 457778888842 357888777432 2345777889999999998888777665543
No 307
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.12 E-value=2.1e+02 Score=31.48 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=44.0
Q ss_pred cEEEEcCCCCCC-CH--HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1057 DYILMDCEMPIM-NG--YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1057 DlILmDi~MP~m-dG--~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.+|++|+..-++ .| +++++++++. ..+|||+-.+-.+.++..++++.|++..+.
T Consensus 164 ~ii~tdi~~dGt~~G~~~~li~~l~~~-----~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 164 GIIYTDIAKDGKMSGPNFELTGQLVKA-----TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred EEEEecccCcCCCCccCHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 699999987654 33 6677888763 368999999999999999999999999875
No 308
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=32.64 E-value=1.4e+02 Score=33.04 Aligned_cols=54 Identities=22% Similarity=0.194 Sum_probs=33.3
Q ss_pred CHHHHHHHHhhhhccCCCCccEEEEcccCC------HHHHHHHHHcCCCEEEECCCCHHHHHHHH
Q 042553 1069 NGYEATRKIREEEKRNQVHIPIIALTAHIS------GEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127 (1131)
Q Consensus 1069 dG~e~~r~IR~~~~~~~~~ipIIalTa~~~------~~~~~~~l~aG~d~yL~KP~~~~~L~~~I 1127 (1131)
.+++.++++|+. ..+|+++|+-... +....+|.++|+++.+.=.+..+++...+
T Consensus 63 ~~~~~~~~vr~~-----~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~ 122 (242)
T cd04724 63 DVLELVKEIRKK-----NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFR 122 (242)
T ss_pred HHHHHHHHHhhc-----CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 356666677653 2578777776332 55677788889988887444445444333
No 309
>PRK15115 response regulator GlrR; Provisional
Probab=32.57 E-value=1.8e+02 Score=35.07 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=31.3
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLH 739 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~ 739 (1131)
.++++++++...+..+...++..|+.+..+.+..+..
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal 42 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEAL 42 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHH
Confidence 5789999999999999999999999988777766543
No 310
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=32.44 E-value=4.8e+02 Score=30.22 Aligned_cols=101 Identities=23% Similarity=0.203 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhCCCEE--EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC-----HHHHHHHHh
Q 042553 1006 DSMMLRRVAEINLRHLGATV--EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN-----GYEATRKIR 1078 (1131)
Q Consensus 1006 D~~~~~~~l~~~L~~~g~~v--~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md-----G~e~~r~IR 1078 (1131)
|.....+..+ .|-+.|+.| +++.|..+|-++..-+ + +.+|=+--|.-. --+.++.++
T Consensus 182 d~~~~v~aa~-~L~~~Gf~v~~yc~~d~~~a~~l~~~g--------------~-~avmPl~~pIGsg~gv~~p~~i~~~~ 245 (326)
T PRK11840 182 DMVETLKATE-ILVKEGFQVMVYCSDDPIAAKRLEDAG--------------A-VAVMPLGAPIGSGLGIQNPYTIRLIV 245 (326)
T ss_pred CHHHHHHHHH-HHHHCCCEEEEEeCCCHHHHHHHHhcC--------------C-EEEeeccccccCCCCCCCHHHHHHHH
Confidence 3333333333 444569887 4456666666655432 2 444433333222 346677777
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHH
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG-----KPLNRDHLMEAI 1127 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I 1127 (1131)
+. +.+|||+=.+-..+++..++++.|+|+.|. |--++-.+.++.
T Consensus 246 e~-----~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~ 294 (326)
T PRK11840 246 EG-----ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAM 294 (326)
T ss_pred Hc-----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHH
Confidence 64 368999888889999999999999999864 445555555444
No 311
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=32.16 E-value=2.5e+02 Score=29.30 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=27.4
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
++++++++...+..+...++..|+.+..+.+....
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~ 36 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQG 36 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHH
Confidence 47788888888888999999899888766655443
No 312
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=32.04 E-value=4.7e+02 Score=31.74 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=62.2
Q ss_pred CCeEEEEeC---CHHHHH-HHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEc--------
Q 042553 998 GKKILVADD---SMMLRR-VAEINLRHL-GATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMD-------- 1062 (1131)
Q Consensus 998 ~~~ILvvdD---~~~~~~-~l~~~L~~~-g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmD-------- 1062 (1131)
+..++.||- +..... .++.+-++. ...|. .+.+.++|..++..+ .|.|-+-
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG--------------ad~i~vg~g~G~~~~ 301 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG--------------ADGLRVGIGPGSICT 301 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC--------------CCEEEECCCCCcCCc
Confidence 467888887 443333 333333332 33333 477888888888753 5665432
Q ss_pred ------CCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1063 ------CEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1063 ------i~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+..| -++++..+++..+ ...+|||+=.+-....+..+|+.+||+..+.
T Consensus 302 t~~~~~~g~p---~~~~i~~~~~~~~--~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 302 TRIVAGVGVP---QITAVYDVAEYAA--QSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred cceecCCCcc---HHHHHHHHHHHHh--hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 2223 2355555554322 2358999988888899999999999998764
No 313
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.90 E-value=4.1e+02 Score=29.37 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=41.9
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHc-CCCEEEE------CCCCHHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA-GMDVHLG------KPLNRDHLMEAIK 1128 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~a-G~d~yL~------KP~~~~~L~~~I~ 1128 (1131)
+++++++++. ..+|||+-.+-.+.++..++++. |+++.+. .-++++++.+.++
T Consensus 186 ~~~i~~~~~~-----~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 186 LELTRAVSDA-----VNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLA 245 (253)
T ss_pred HHHHHHHHhh-----CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHH
Confidence 6778888764 25899999999999999999975 9998876 4577777777665
No 314
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=31.73 E-value=37 Score=42.98 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=27.8
Q ss_pred EEEEEecCCCCCcchHh----hhccC-Ceec------CC----CCCC-cccchHHHHHHHHHh
Q 042553 568 TFEVDDTGKGIPKEKRK----TVFEN-YVQV------KE----GEGG-TGLGLGIVQSLVRLM 614 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~----~IFe~-F~q~------~~----~~~G-tGLGLsIvk~Lv~~~ 614 (1131)
.++|.|+|.|||-+..+ ...|- |... +. -.+| .|.|++.|.-|-+.+
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~~ 129 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSWL 129 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeeceE
Confidence 48999999999975332 11221 1111 11 1134 699999887776654
No 315
>PRK07695 transcriptional regulator TenI; Provisional
Probab=31.64 E-value=2.5e+02 Score=29.79 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=31.3
Q ss_pred CHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEE
Q 042553 1069 NGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113 (1131)
Q Consensus 1069 dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y 1113 (1131)
.|++.++++++. .++||+++-+- ..+....++++|++++
T Consensus 136 ~g~~~l~~~~~~-----~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 136 RGLEELSDIARA-----LSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred CCHHHHHHHHHh-----CCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 367888888753 25899988776 7888999999999987
No 316
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=31.34 E-value=1.3e+02 Score=32.72 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=40.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGAT--VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI 1067 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~--v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~ 1067 (1131)
+|.-+|=|+...+..+..+++.|+. +..... -+|++.+.... ..+||+||+|..=+.
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~----------~~~fDliFIDadK~~ 144 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLL----------DGSFDLVFIDADKAD 144 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhcc----------CCCccEEEEeCChhh
Confidence 7999999999999999999999864 333331 34444444311 137999999987554
No 317
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=31.11 E-value=5.2e+02 Score=29.93 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=58.9
Q ss_pred CCeEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC---
Q 042553 998 GKKILVADD----SMMLRRVAEINLRHLG-ATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI--- 1067 (1131)
Q Consensus 998 ~~~ILvvdD----~~~~~~~l~~~L~~~g-~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~--- 1067 (1131)
+..++++|= .+...+.++.+-+... ..+. .+.+.++|..+.+. ..|.|...+ -|+
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a--------------GaD~I~vg~-g~G~~~ 170 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA--------------GADGVKVGI-GPGSIC 170 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc--------------CCCEEEECC-CCCcCc
Confidence 345666653 2223333333333322 4443 36778888887764 477776531 111
Q ss_pred ---------CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1068 ---------MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1068 ---------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..-+.++..+++... ...+|||+--+-....+..+++.+||+..+.
T Consensus 171 ~t~~~~g~g~p~~~~i~~v~~~~~--~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 171 TTRIVTGVGVPQATAVADVAAAAR--DYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred ccceeCCCCCCHHHHHHHHHHHHh--hcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 112344444443321 1258999877778889999999999998765
No 318
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=30.85 E-value=2.6e+02 Score=29.30 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=29.4
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
.++++++++......+...++..|+.+..+.+....
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~ 38 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGM 38 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHH
Confidence 357888899888899999999999988877776544
No 319
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=30.48 E-value=4e+02 Score=29.99 Aligned_cols=92 Identities=21% Similarity=0.132 Sum_probs=0.0
Q ss_pred EEEEeCC-------HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHH
Q 042553 1001 ILVADDS-------MMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073 (1131)
Q Consensus 1001 ILvvdD~-------~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~ 1073 (1131)
+||.|+| ......++..+...-.-...+.+-+||.++.+. ..|+|.+|-.-| |.
T Consensus 155 vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~--------------gaDyI~ld~~~~-----e~ 215 (268)
T cd01572 155 VLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA--------------GADIIMLDNMSP-----EE 215 (268)
T ss_pred eeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc--------------CCCEEEECCcCH-----HH
Q ss_pred HHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++++.+.-.. ++||++.-+ -..+......++|+|.+-+
T Consensus 216 l~~~~~~~~~---~ipi~AiGG-I~~~ni~~~a~~Gvd~Iav 253 (268)
T cd01572 216 LREAVALLKG---RVLLEASGG-ITLENIRAYAETGVDYISV 253 (268)
T ss_pred HHHHHHHcCC---CCcEEEECC-CCHHHHHHHHHcCCCEEEE
No 320
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=30.42 E-value=1.8e+02 Score=34.91 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=31.0
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLH 739 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~ 739 (1131)
.++++++|+...+..+...++.+|+.+..+.+.....
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al 42 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQAL 42 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHH
Confidence 5788999999999999999999999988777666543
No 321
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=30.38 E-value=1.8e+02 Score=33.12 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=47.0
Q ss_pred EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHH
Q 042553 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD 1103 (1131)
Q Consensus 1024 ~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~ 1103 (1131)
-...+.+.+||.++++. .+|+|++|-+-| -+=-++++.++ .+ .+|..++.-..+...
T Consensus 211 IeVEv~sleea~ea~~~--------------gaDiI~LDn~s~-e~~~~av~~~~-------~~-~~ieaSGGI~~~ni~ 267 (296)
T PRK09016 211 VEVEVENLDELDQALKA--------------GADIIMLDNFTT-EQMREAVKRTN-------GR-ALLEVSGNVTLETLR 267 (296)
T ss_pred EEEEeCCHHHHHHHHHc--------------CCCEEEeCCCCh-HHHHHHHHhhc-------CC-eEEEEECCCCHHHHH
Confidence 45578899999999985 489999995444 22222233222 13 367778888888998
Q ss_pred HHHHcCCCEEE
Q 042553 1104 KTIEAGMDVHL 1114 (1131)
Q Consensus 1104 ~~l~aG~d~yL 1114 (1131)
+..+.|+|-..
T Consensus 268 ~yA~tGVD~Is 278 (296)
T PRK09016 268 EFAETGVDFIS 278 (296)
T ss_pred HHHhcCCCEEE
Confidence 88999998653
No 322
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.34 E-value=1.8e+02 Score=31.72 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=53.6
Q ss_pred HHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH-------HHHHHHHhhhhccCCCC
Q 042553 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG-------YEATRKIREEEKRNQVH 1087 (1131)
Q Consensus 1015 ~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG-------~e~~r~IR~~~~~~~~~ 1087 (1131)
-..+++.|..+-.|-|...-++.+..-. ...|+|+.=---|+..| ++-++++|+.-...+.+
T Consensus 99 l~~ik~~g~k~GlalnP~Tp~~~i~~~l-----------~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~ 167 (220)
T PRK08883 99 LQLIKEHGCQAGVVLNPATPLHHLEYIM-----------DKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRD 167 (220)
T ss_pred HHHHHHcCCcEEEEeCCCCCHHHHHHHH-----------HhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCC
Confidence 3556778887776655444444333211 13676655344566555 55567776654333445
Q ss_pred ccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1088 IPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1088 ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+||.+- +.-..+....+.++|+|.++.
T Consensus 168 ~~I~vd-GGI~~eni~~l~~aGAd~vVv 194 (220)
T PRK08883 168 IRLEID-GGVKVDNIREIAEAGADMFVA 194 (220)
T ss_pred eeEEEE-CCCCHHHHHHHHHcCCCEEEE
Confidence 777664 445588888999999998743
No 323
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=30.22 E-value=1.2e+02 Score=34.38 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=40.9
Q ss_pred CHHHHHHHHhhhhccCCCCccEE--EEcccCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHH
Q 042553 1069 NGYEATRKIREEEKRNQVHIPII--ALTAHISGEEADKTIEAGMDVHL-----GKPLNRDHLMEAI 1127 (1131)
Q Consensus 1069 dG~e~~r~IR~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL-----~KP~~~~~L~~~I 1127 (1131)
-++++++++++. ..+||| +..+-..+++...++++|+++++ .|.-++.+....+
T Consensus 190 ~~~elL~ei~~~-----~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akaf 250 (293)
T PRK04180 190 APYELVKEVAEL-----GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAI 250 (293)
T ss_pred CCHHHHHHHHHh-----CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHH
Confidence 468889999874 258998 88887799999999999999984 4444555554444
No 324
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=29.95 E-value=2.2e+02 Score=29.02 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=48.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEE--------------CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEc
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEAC--------------ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMD 1062 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a--------------~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmD 1062 (1131)
+++|+||+.......+-+...|+...+.+..- ..-.-....+... .....||+||||
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~~p---------~~~~~yd~II~D 102 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLLNP---------CRLKNYDVIIMD 102 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHHTS---------SCTTS-SEEEEC
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhcCc---------ccccCccEEEEe
Confidence 46799999999999999999998766433211 1111223333221 112469999999
Q ss_pred CCCCCCCH--HHHHHHHhhhhccCCCCccEEEEccc
Q 042553 1063 CEMPIMNG--YEATRKIREEEKRNQVHIPIIALTAH 1096 (1131)
Q Consensus 1063 i~MP~mdG--~e~~r~IR~~~~~~~~~ipIIalTa~ 1096 (1131)
..--+|- +.+.-.|+..... ....+|.+||-
T Consensus 103 -EcH~~Dp~sIA~rg~l~~~~~~--g~~~~i~mTAT 135 (148)
T PF07652_consen 103 -ECHFTDPTSIAARGYLRELAES--GEAKVIFMTAT 135 (148)
T ss_dssp -TTT--SHHHHHHHHHHHHHHHT--TS-EEEEEESS
T ss_pred -ccccCCHHHHhhheeHHHhhhc--cCeeEEEEeCC
Confidence 2334554 4444456655432 23568999884
No 325
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=29.86 E-value=1.4e+02 Score=33.88 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=48.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhC--CCE---E-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHH
Q 042553 1000 KILVADDSMMLRRVAEINLRHL--GAT---V-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~--g~~---v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~ 1073 (1131)
.|+++|-+....++-++++... ||+ | ....||.+-++.+.+ .+||+|+.|..=|.+.+..+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~-------------~~~dVii~dssdpvgpa~~l 213 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE-------------NPFDVIITDSSDPVGPACAL 213 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc-------------CCceEEEEecCCccchHHHH
Confidence 5899999998888888888653 442 3 334588888888765 38999999999999998765
Q ss_pred H
Q 042553 1074 T 1074 (1131)
Q Consensus 1074 ~ 1074 (1131)
-
T Consensus 214 f 214 (337)
T KOG1562|consen 214 F 214 (337)
T ss_pred H
Confidence 3
No 326
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=29.55 E-value=1.2e+02 Score=31.93 Aligned_cols=76 Identities=22% Similarity=0.230 Sum_probs=46.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEE-cCC-CCCCCHHHHHHHHh
Q 042553 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILM-DCE-MPIMNGYEATRKIR 1078 (1131)
Q Consensus 1001 ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILm-Di~-MP~mdG~e~~r~IR 1078 (1131)
|||+|.....-.-+..+|++.|+.+....+-...++.+.. ..||.|++ -=- -|..++.+ .+.||
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~-------------~~~d~iilsgGpg~p~~~~~~-~~~i~ 67 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA-------------LLPLLIVISPGPCTPNEAGIS-LEAIR 67 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh-------------cCCCEEEEcCCCCChhhcchh-HHHHH
Confidence 8999999988888889999899998877644322333332 24785555 211 12222332 44555
Q ss_pred hhhccCCCCccEEEEc
Q 042553 1079 EEEKRNQVHIPIIALT 1094 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalT 1094 (1131)
... ..+||+.+.
T Consensus 68 ~~~----~~~PvLGIC 79 (188)
T TIGR00566 68 HFA----GKLPILGVC 79 (188)
T ss_pred Hhc----cCCCEEEEC
Confidence 431 257999886
No 327
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.52 E-value=3.7e+02 Score=31.82 Aligned_cols=92 Identities=15% Similarity=0.128 Sum_probs=53.2
Q ss_pred CeEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC-CCCCCHHHHH
Q 042553 999 KKILVADDSMM---LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE-MPIMNGYEAT 1074 (1131)
Q Consensus 999 ~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~-MP~mdG~e~~ 1074 (1131)
.+|.++..+.. -.+.++.+-+..|..+..+.++.+....+.+. ..+|+||+|.- +...|.. ..
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l------------~~~DlVLIDTaG~~~~d~~-l~ 234 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL------------RNKHMVLIDTIGMSQRDRT-VS 234 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh------------cCCCEEEEcCCCCCcccHH-HH
Confidence 46777766654 34566666777888888887776655555432 25899999864 2323332 33
Q ss_pred HHHhhhhccCCCCccEEEEcccCCHHHHH
Q 042553 1075 RKIREEEKRNQVHIPIIALTAHISGEEAD 1103 (1131)
Q Consensus 1075 r~IR~~~~~~~~~ipIIalTa~~~~~~~~ 1103 (1131)
+.+........+.-.+++|++....++..
T Consensus 235 e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 235 DQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred HHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 33433221112223478888877665543
No 328
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=29.47 E-value=82 Score=33.30 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=47.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEc-CCC-CCCCHHHHHHHHh
Q 042553 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMD-CEM-PIMNGYEATRKIR 1078 (1131)
Q Consensus 1001 ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmD-i~M-P~mdG~e~~r~IR 1078 (1131)
|||||.....-..+...|.+.|++|..+.+.+--++.+.. ..||.|++- =-| |..+|. ....++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~-------------~~~~~iilsgGP~~~~~~~~-~~~~i~ 67 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ-------------LAPSHLVISPGPCTPNEAGI-SLAVIR 67 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh-------------cCCCeEEEcCCCCChHhCCC-chHHHH
Confidence 8999999988888899999999999888765422333432 146766552 211 222222 233444
Q ss_pred hhhccCCCCccEEEEc
Q 042553 1079 EEEKRNQVHIPIIALT 1094 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalT 1094 (1131)
.. ...+||+.+.
T Consensus 68 ~~----~~~~PiLGIC 79 (191)
T PRK06774 68 HF----ADKLPILGVC 79 (191)
T ss_pred Hh----cCCCCEEEEC
Confidence 32 1258999886
No 329
>PRK05637 anthranilate synthase component II; Provisional
Probab=29.00 E-value=1.6e+02 Score=31.69 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=47.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEE--cCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILM--DCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILm--Di~MP~mdG~e~~r~ 1076 (1131)
.+||++|-..-+-.-+...|++.|+.+..+.+... ++.+.. ..||.|++ --.-|...+ +..+.
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~-------------~~~~~iIlsgGPg~~~d~~-~~~~l 66 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA-------------ANPDLICLSPGPGHPRDAG-NMMAL 66 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh-------------cCCCEEEEeCCCCCHHHhh-HHHHH
Confidence 47999999888888899999999998888766432 233322 14787777 222222222 22344
Q ss_pred HhhhhccCCCCccEEEEc
Q 042553 1077 IREEEKRNQVHIPIIALT 1094 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalT 1094 (1131)
++... ..+||+.+.
T Consensus 67 i~~~~----~~~PiLGIC 80 (208)
T PRK05637 67 IDRTL----GQIPLLGIC 80 (208)
T ss_pred HHHHh----CCCCEEEEc
Confidence 44321 257888875
No 330
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.77 E-value=3.9e+02 Score=30.49 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=57.4
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHH
Q 042553 1001 ILVADDSMMLR----RVAEINLRHLGA---TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073 (1131)
Q Consensus 1001 ILvvdD~~~~~----~~l~~~L~~~g~---~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~ 1073 (1131)
|||-|.|-... ..+...-++.++ -...+.+-+||.+++.. ..|+|++|= |..-+=-++
T Consensus 170 iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a--------------gaDiImLDn-mspe~l~~a 234 (290)
T PRK06559 170 IMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA--------------GADIIMLDN-MSLEQIEQA 234 (290)
T ss_pred EEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc--------------CCCEEEECC-CCHHHHHHH
Confidence 66665554333 233333333442 23468999999999975 489999994 333333344
Q ss_pred HHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEE
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y 1113 (1131)
++.++. + .++-.++.-..+......+.|+|-.
T Consensus 235 v~~~~~-------~-~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 235 ITLIAG-------R-SRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred HHHhcC-------c-eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 443331 2 3677888889999988889999854
No 331
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=28.65 E-value=1.5e+02 Score=36.04 Aligned_cols=55 Identities=24% Similarity=0.287 Sum_probs=40.0
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1055 PYDYILMDCEMPI-MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1055 ~~DlILmDi~MP~-mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
.+|+|.+|+.-.. ..-.+++++||+. .+++|||+ ..-.+.++...+.++|+|...
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~----~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKT----YPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHh----CCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 5899999984432 3456778888764 34688887 233457888899999999873
No 332
>PRK12704 phosphodiesterase; Provisional
Probab=28.61 E-value=49 Score=40.85 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=35.2
Q ss_pred cEEEEcccCCHH--HHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1089 PIIALTAHISGE--EADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1089 pIIalTa~~~~~--~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
.+|+||+.+... ....+++.|+.|+..||+..+++...++.
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~ 293 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARK 293 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHH
Confidence 478899987764 77889999999999999999999988764
No 333
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=28.58 E-value=1.4e+02 Score=31.43 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=26.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECC
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACEN 1030 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~n 1030 (1131)
+||||+|-....-..+...|++.|+++.+...
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~ 33 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNV 33 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEEC
Confidence 58999998887766789999999988777663
No 334
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=28.44 E-value=1.4e+02 Score=31.76 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhCCCEEEEECCH---H----HHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH--HHHHHHHhh
Q 042553 1009 MLRRVAEINLRHLGATVEACENG---E----AALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG--YEATRKIRE 1079 (1131)
Q Consensus 1009 ~~~~~l~~~L~~~g~~v~~a~ng---~----eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG--~e~~r~IR~ 1079 (1131)
--.+.++.+-+..|..+..+.+. . ++++.++. ..+|+||+|- |+++- .+.++++++
T Consensus 43 ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~-------------~~~D~vlIDT--~Gr~~~d~~~~~el~~ 107 (196)
T PF00448_consen 43 GAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK-------------KGYDLVLIDT--AGRSPRDEELLEELKK 107 (196)
T ss_dssp HHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH-------------TTSSEEEEEE---SSSSTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh-------------cCCCEEEEec--CCcchhhHHHHHHHHH
Confidence 34567788888889888876632 2 34444443 2699999997 55443 345556655
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHH---HH-cCCCEE-EEC
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKT---IE-AGMDVH-LGK 1116 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~---l~-aG~d~y-L~K 1116 (1131)
......+.-.++++++....++...+ .+ .|.++. ++|
T Consensus 108 ~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTK 149 (196)
T PF00448_consen 108 LLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTK 149 (196)
T ss_dssp HHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEES
T ss_pred HhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEe
Confidence 43322334467777777666554333 33 467765 444
No 335
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=28.41 E-value=8.3e+02 Score=28.30 Aligned_cols=97 Identities=19% Similarity=0.114 Sum_probs=59.5
Q ss_pred eEEEEeCC----HHHHHHHHHHHHhCCCE-EE-E-ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcC---------
Q 042553 1000 KILVADDS----MMLRRVAEINLRHLGAT-VE-A-CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDC--------- 1063 (1131)
Q Consensus 1000 ~ILvvdD~----~~~~~~l~~~L~~~g~~-v~-~-a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi--------- 1063 (1131)
.++++|-- ....+.++.+-+..... +. - +.+.+.|..+.+.+ .|.|..-+
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG--------------ad~I~V~~G~G~~~~tr 175 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG--------------ADATKVGIGPGKVCITK 175 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC--------------cCEEEECCCCCccccce
Confidence 46666652 23333444444444322 22 1 45788888887653 55555331
Q ss_pred -CCC-CCC--HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1064 -EMP-IMN--GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1064 -~MP-~md--G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.+. +.. +++++..+++. .++|||+-.+-....|..+|+.+|||..+.
T Consensus 176 ~~~g~g~~~~~l~ai~ev~~a-----~~~pVIadGGIr~~~Di~KALa~GAd~Vmi 226 (321)
T TIGR01306 176 IKTGFGTGGWQLAALRWCAKA-----ARKPIIADGGIRTHGDIAKSIRFGASMVMI 226 (321)
T ss_pred eeeccCCCchHHHHHHHHHHh-----cCCeEEEECCcCcHHHHHHHHHcCCCEEee
Confidence 111 111 35577777653 258999999999999999999999998754
No 336
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=28.33 E-value=5.8e+02 Score=26.83 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=49.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLG--ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI 1067 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g--~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~ 1067 (1131)
-.+++|+.+++..++.+..+++..| |.|..+.+.+++++.++.. ...+.|+..+...+.
T Consensus 31 a~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~-----------G~vvhLtmyga~~~~ 91 (176)
T PRK03958 31 ADKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDG-----------GIVVHLTMYGENIQD 91 (176)
T ss_pred CceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhC-----------CcEEEEEEecCCccc
Confidence 3579999999999999999999997 6799999999999999732 125788888888766
No 337
>PRK14084 two-component response regulator; Provisional
Probab=28.31 E-value=3.1e+02 Score=29.59 Aligned_cols=35 Identities=6% Similarity=0.185 Sum_probs=23.9
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcC-C-eeeecccHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLG-I-NVSAVSRWERL 738 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g-~-~~~~~~~~~~l 738 (1131)
++++++|++..+..+...++.++ + .+..+.+..++
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~ 38 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKET 38 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHH
Confidence 47788888888888888888766 3 24444454433
No 338
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=28.23 E-value=67 Score=34.67 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.6
Q ss_pred eEEeCHHHHHHHHHHHHHHHhhccC
Q 042553 482 KVKGDRVKLKQILSNLLSNAVKFTS 506 (1131)
Q Consensus 482 ~v~gD~~rL~QIL~NLL~NAiKfT~ 506 (1131)
.+.|||.|-+-|-.|+|.||++|++
T Consensus 18 LmPGDPlRAK~iAetfLe~~~~vne 42 (236)
T COG0813 18 LMPGDPLRAKYIAETFLENAVCVNE 42 (236)
T ss_pred ecCCCCchHHHHHHHHHhhhhhhhh
Confidence 3569999999999999999999984
No 339
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=28.16 E-value=2.1e+02 Score=35.41 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=38.2
Q ss_pred CccEEEEcCCCCCCCH--HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1055 PYDYILMDCEMPIMNG--YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1055 ~~DlILmDi~MP~mdG--~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..|+|.+|+. .+-+- ++.+++||+. .++++||+= .-...++...+.++|+|....
T Consensus 260 g~d~i~iD~~-~g~~~~~~~~i~~ik~~----~p~~~vi~g-~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 260 GVDVVVLDSS-QGDSIYQLEMIKYIKKT----YPELDVIGG-NVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred CCCEEEEeCC-CCCcHHHHHHHHHHHHh----CCCCcEEEe-cCCCHHHHHHHHHcCcCEEEE
Confidence 5899999994 22222 3788999874 335666642 234578889999999998753
No 340
>PRK13566 anthranilate synthase; Provisional
Probab=28.11 E-value=1.7e+02 Score=37.69 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=51.9
Q ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEc--CCCCCCCHH
Q 042553 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMD--CEMPIMNGY 1071 (1131)
Q Consensus 994 ~~~~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmD--i~MP~mdG~ 1071 (1131)
.+..+++|||||-...+...+..+|++.|++|........ .+.+.. ..||.||+- -..|.. +
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~-------------~~~DgVVLsgGpgsp~d--~ 585 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR-------------VNPDLVVLSPGPGRPSD--F 585 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh-------------cCCCEEEECCCCCChhh--C
Confidence 3456789999999988888999999999999988766532 222222 258887761 111211 1
Q ss_pred HHHHHHhhhhccCCCCccEEEEcc
Q 042553 1072 EATRKIREEEKRNQVHIPIIALTA 1095 (1131)
Q Consensus 1072 e~~r~IR~~~~~~~~~ipIIalTa 1095 (1131)
.+.+.|+..-. ..+||+.+.-
T Consensus 586 ~~~~lI~~a~~---~~iPILGICl 606 (720)
T PRK13566 586 DCKATIDAALA---RNLPIFGVCL 606 (720)
T ss_pred CcHHHHHHHHH---CCCcEEEEeh
Confidence 23344443321 2589998863
No 341
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=27.95 E-value=2.4e+02 Score=34.07 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=28.1
Q ss_pred EEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHH
Q 042553 705 VVLLIANEERRRIAQKFMENLGINVSAVSRWERLH 739 (1131)
Q Consensus 705 vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~ 739 (1131)
++++++++..+..+...++..|+.+..+.+..+..
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al 35 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVL 35 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHH
Confidence 36788888889999999999999988877665543
No 342
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.94 E-value=2.6e+02 Score=23.97 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 042553 320 LLIVMTVGVLISML 333 (1131)
Q Consensus 320 ~l~~~~~~i~~~~~ 333 (1131)
+++.++++++++.+
T Consensus 24 il~~f~~G~llg~l 37 (68)
T PF06305_consen 24 ILIAFLLGALLGWL 37 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 343
>PRK09483 response regulator; Provisional
Probab=27.94 E-value=2.7e+02 Score=29.05 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=25.4
Q ss_pred eEEEEEeCHHHHHHHHHHHHHc-CCeee-ecccHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENL-GINVS-AVSRWERL 738 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~-g~~~~-~~~~~~~l 738 (1131)
+++++++++..+..+..+++.+ |+.+. .+.+....
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~ 39 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDA 39 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHH
Confidence 5778888888888888898875 77764 45555443
No 344
>PF13974 YebO: YebO-like protein
Probab=27.79 E-value=2.1e+02 Score=25.97 Aligned_cols=12 Identities=8% Similarity=0.434 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 042553 344 RKEMHLCASLIK 355 (1131)
Q Consensus 344 ~~e~~~~~~l~~ 355 (1131)
...+++++++.+
T Consensus 26 NEQI~LL~~ile 37 (80)
T PF13974_consen 26 NEQIELLEEILE 37 (80)
T ss_pred HHHHHHHHHHHH
Confidence 344455444433
No 345
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.78 E-value=2e+02 Score=32.80 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=47.4
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHH
Q 042553 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104 (1131)
Q Consensus 1025 v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~ 1104 (1131)
...+.+-+||.+++.. .+|+|++|- |+..+=-++++.++. + .++-.++.-..+....
T Consensus 209 eVEvetleea~eA~~a--------------GaDiImLDn-mspe~l~~av~~~~~-------~-~~lEaSGGIt~~ni~~ 265 (294)
T PRK06978 209 QIEVETLAQLETALAH--------------GAQSVLLDN-FTLDMMREAVRVTAG-------R-AVLEVSGGVNFDTVRA 265 (294)
T ss_pred EEEcCCHHHHHHHHHc--------------CCCEEEECC-CCHHHHHHHHHhhcC-------C-eEEEEECCCCHHHHHH
Confidence 3568999999999975 489999994 433333334443321 2 4677888889999988
Q ss_pred HHHcCCCEE
Q 042553 1105 TIEAGMDVH 1113 (1131)
Q Consensus 1105 ~l~aG~d~y 1113 (1131)
..+.|+|-.
T Consensus 266 yA~tGVD~I 274 (294)
T PRK06978 266 FAETGVDRI 274 (294)
T ss_pred HHhcCCCEE
Confidence 889999854
No 346
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=27.18 E-value=4e+02 Score=32.31 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=46.1
Q ss_pred CCCeEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHH----HHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC
Q 042553 997 RGKKILVADDSMM---LRRVAEINLRHLGATVEACENGEAAL----QLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN 1069 (1131)
Q Consensus 997 ~~~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl----~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md 1069 (1131)
.+.+|++|+-|.. ....+..+.++.|..+....+..++. +.++.. ..+|+||+|.---.-.
T Consensus 122 ~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~------------~~~DvVIIDTAGr~~~ 189 (437)
T PRK00771 122 KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF------------KKADVIIVDTAGRHAL 189 (437)
T ss_pred cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh------------hcCCEEEEECCCcccc
Confidence 3568998888753 23345555666777666543322222 222221 1369999997521111
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEcccCCH
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAHISG 1099 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~ 1099 (1131)
--+++++++.......++-.++++.+....
T Consensus 190 d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 190 EEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred hHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 223444444432222344456666654443
No 347
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=27.10 E-value=6.7e+02 Score=28.54 Aligned_cols=86 Identities=16% Similarity=0.051 Sum_probs=55.1
Q ss_pred HHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCC-----CCCCHHHHHHHHhhhhccCC
Q 042553 1013 VAEINLRHLGAT--VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEM-----PIMNGYEATRKIREEEKRNQ 1085 (1131)
Q Consensus 1013 ~l~~~L~~~g~~--v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~M-----P~mdG~e~~r~IR~~~~~~~ 1085 (1131)
.++.+-+..+.- +..+.+.++|..+.+. ..|.|.+.-+- .+...++++.++++.- .
T Consensus 163 ~i~~l~~~~~~pvivK~v~s~~~a~~a~~~--------------G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~ 225 (299)
T cd02809 163 DLAWLRSQWKGPLILKGILTPEDALRAVDA--------------GADGIVVSNHGGRQLDGAPATIDALPEIVAAV---G 225 (299)
T ss_pred HHHHHHHhcCCCEEEeecCCHHHHHHHHHC--------------CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh---c
Confidence 344444443333 2334677777666553 36666654321 1334577888887642 1
Q ss_pred CCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1086 VHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1086 ~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.++|||+-.+-.+..+..+++..|||....
T Consensus 226 ~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 226 GRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 258999999999999999999999998743
No 348
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=27.08 E-value=3.4e+02 Score=27.95 Aligned_cols=35 Identities=3% Similarity=0.043 Sum_probs=26.8
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeee-ecccHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVS-AVSRWERL 738 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~l 738 (1131)
+++++++++..+..+...++..|+.+. .+.+....
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~ 37 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSA 37 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 467888888888889999988898876 45555543
No 349
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=27.06 E-value=3e+02 Score=29.96 Aligned_cols=55 Identities=22% Similarity=0.194 Sum_probs=43.9
Q ss_pred ccEEEEcCCCCCC-CH--HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1056 YDYILMDCEMPIM-NG--YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1056 ~DlILmDi~MP~m-dG--~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..+|++|+.--++ .| +++++++++. ..+|+|+=-+-.+.++..++.++|+++.+.
T Consensus 155 ~~ii~tdI~~dGt~~G~d~eli~~i~~~-----~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 155 YGLIVLDIHSVGTMKGPNLELLTKTLEL-----SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred CEEEEEECCccccCCCCCHHHHHHHHhh-----CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3688899886543 33 7888888864 358999998888999999999999998875
No 350
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=27.03 E-value=90 Score=32.99 Aligned_cols=91 Identities=21% Similarity=0.177 Sum_probs=55.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC--CCCCCHHHHHHHHh
Q 042553 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE--MPIMNGYEATRKIR 1078 (1131)
Q Consensus 1001 ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~--MP~mdG~e~~r~IR 1078 (1131)
|||+|.....-..+..+|.+.|+++....+.+..++.+.. ..||.||+--. -|..+|. ..+.+|
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~-------------~~~d~iils~GPg~p~~~~~-~~~~~~ 67 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA-------------LKPQKIVISPGPCTPDEAGI-SLDVIR 67 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh-------------cCCCEEEEcCCCCChHHCCc-cHHHHH
Confidence 8999999988888889999999998887765422333332 14777776311 1223332 233344
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEE
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y 1113 (1131)
.. ...+||+.+.- ....-|...|+.-+
T Consensus 68 ~~----~~~~PiLGICl----G~Q~la~a~Gg~v~ 94 (187)
T PRK08007 68 HY----AGRLPILGVCL----GHQAMAQAFGGKVV 94 (187)
T ss_pred Hh----cCCCCEEEECH----HHHHHHHHcCCEEE
Confidence 32 12589998863 34445555665543
No 351
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=26.96 E-value=3.1e+02 Score=33.19 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=30.9
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLH 739 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~ 739 (1131)
.+++++++++..+..+...++..|+.+..+.+.....
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al 40 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVL 40 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHH
Confidence 4688999999999999999999999988777766543
No 352
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=26.86 E-value=3.3e+02 Score=28.47 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=28.0
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
++++++++...+..+...++..|+.+..+.+....
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~ 36 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDG 36 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 47788888888888999999999988777665543
No 353
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=26.84 E-value=4.7e+02 Score=35.86 Aligned_cols=100 Identities=19% Similarity=0.156 Sum_probs=68.5
Q ss_pred CeEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-CCCH
Q 042553 999 KKILVA----DDSMMLRRVAEINLRHLGATVEACE---NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-IMNG 1070 (1131)
Q Consensus 999 ~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-~mdG 1070 (1131)
.+||+. |-|.+-..++..+|+..||+|.-.. ..++-++.+++. .+|+|-|-..|. .|..
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~-------------~~diVgLS~Lmt~t~~~ 799 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDH-------------NADVIGLSGLITPSLDE 799 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh-------------CCCEEEEcCcccccHHH
Confidence 468877 7777888899999999999998643 456677777663 799999988775 3443
Q ss_pred -HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHH-H--HHcCCCEEEE
Q 042553 1071 -YEATRKIREEEKRNQVHIPIIALTAHISGEEADK-T--IEAGMDVHLG 1115 (1131)
Q Consensus 1071 -~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~-~--l~aG~d~yL~ 1115 (1131)
-+.++.+|+. +..+||++=-+-.+.+.... + ...|+|.|-.
T Consensus 800 m~~vi~~L~~~----g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~ 844 (1178)
T TIGR02082 800 MKEVAEEMNRR----GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVL 844 (1178)
T ss_pred HHHHHHHHHhc----CCCceEEEeccccchhHHHhhhhhhccCCeEEec
Confidence 3456677664 34688877666555544432 1 1238888754
No 354
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.82 E-value=6.1e+02 Score=27.60 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=47.6
Q ss_pred cc-EEEEcCCCC---CCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE------ECCCCHHHHHH
Q 042553 1056 YD-YILMDCEMP---IMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL------GKPLNRDHLME 1125 (1131)
Q Consensus 1056 ~D-lILmDi~MP---~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL------~KP~~~~~L~~ 1125 (1131)
++ ++++|+..- ..-.++.++++++. ..+||++-.+-.+.++..+++++|+++.+ ..|+.++++..
T Consensus 163 ~~~i~~~~~~~~g~~~g~~~~~i~~i~~~-----~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~ 237 (241)
T PRK13585 163 AGSILFTNVDVEGLLEGVNTEPVKELVDS-----VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKFTLEEAIE 237 (241)
T ss_pred CCEEEEEeecCCCCcCCCCHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCcCHHHHHH
Confidence 44 455565321 22347788888764 25899999988888999899999999874 56777777665
Q ss_pred HH
Q 042553 1126 AI 1127 (1131)
Q Consensus 1126 ~I 1127 (1131)
.+
T Consensus 238 ~~ 239 (241)
T PRK13585 238 AV 239 (241)
T ss_pred Hh
Confidence 54
No 355
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=26.74 E-value=4.2e+02 Score=28.96 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=63.1
Q ss_pred EEeCCHHHHHHHH------------HHHHhCCCEEEE----------ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEE
Q 042553 1003 VADDSMMLRRVAE------------INLRHLGATVEA----------CENGEAALQLVRSGLNDQRDLGAPHILPYDYIL 1060 (1131)
Q Consensus 1003 vvdD~~~~~~~l~------------~~L~~~g~~v~~----------a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlIL 1060 (1131)
+|.||.+..++.. .+|++.|..|.. ...-.+|++++.+. ++|.++
T Consensus 118 fvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~-------------~~DalV 184 (275)
T COG1856 118 FVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNY-------------EPDALV 184 (275)
T ss_pred ecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcC-------------CCCeEE
Confidence 4566666655433 355667755432 34567899999863 799999
Q ss_pred EcCCCCC----------CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHH----HHHHHHcCCCEEEECCCC
Q 042553 1061 MDCEMPI----------MNGYEATRKIREEEKRNQVHIPIIALTAHISGEE----ADKTIEAGMDVHLGKPLN 1119 (1131)
Q Consensus 1061 mDi~MP~----------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~----~~~~l~aG~d~yL~KP~~ 1119 (1131)
++.-||- -+--|+++.++... ...+. ||++=.++-..+. ...+..+|+| -+++|.+
T Consensus 185 l~vliPtpGtkm~~~~pp~~eE~i~v~~~AR-~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd-~It~P~~ 254 (275)
T COG1856 185 LVVLIPTPGTKMGNSPPPPVEEAIKVVKYAR-KKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVD-RITFPPR 254 (275)
T ss_pred EEEEecCCchhccCCCCcCHHHHHHHHHHHH-HhCCC-CeeEeecCcCchhHHHHHHHHHHcCCc-eeecCCc
Confidence 9999974 23456666665432 22345 7777666544443 3346778887 4788854
No 356
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=26.59 E-value=42 Score=42.15 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=30.7
Q ss_pred EEEEEecCCCCCcchHh-----------hhccCCeec---CC----CCCCcccchHHHHHHHHHhC
Q 042553 568 TFEVDDTGKGIPKEKRK-----------TVFENYVQV---KE----GEGGTGLGLGIVQSLVRLMG 615 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~-----------~IFe~F~q~---~~----~~~GtGLGLsIvk~Lv~~~g 615 (1131)
.++|.|+|.|||-+..+ -||--.... +. +.|-.|.|.+.|.-|-+.+-
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~~ 145 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLFI 145 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhhh
Confidence 48999999999986542 223211111 11 12447999999988887775
No 357
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=26.57 E-value=5.1e+02 Score=29.94 Aligned_cols=105 Identities=18% Similarity=0.239 Sum_probs=51.7
Q ss_pred CCCeEEEEeCCHHH---HHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC--
Q 042553 997 RGKKILVADDSMML---RRVAEINLRHLGATVEACE---NG----EAALQLVRSGLNDQRDLGAPHILPYDYILMDCE-- 1064 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~---~~~l~~~L~~~g~~v~~a~---ng----~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~-- 1064 (1131)
.+.+|+|++-|..- .+.+...-...|..+..+. +. .+++..... ..||+||+|.-
T Consensus 141 ~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~-------------~~~D~ViIDTaGr 207 (318)
T PRK10416 141 QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA-------------RGIDVLIIDTAGR 207 (318)
T ss_pred cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh-------------CCCCEEEEeCCCC
Confidence 35689999876521 1233444556676665543 22 233332222 26999999974
Q ss_pred CCCCCH-HHHHHHHhhhh---ccCCCCccEEEEcccCCHHHHHHHH----HcCCCEEE
Q 042553 1065 MPIMNG-YEATRKIREEE---KRNQVHIPIIALTAHISGEEADKTI----EAGMDVHL 1114 (1131)
Q Consensus 1065 MP~mdG-~e~~r~IR~~~---~~~~~~ipIIalTa~~~~~~~~~~l----~aG~d~yL 1114 (1131)
+|..+. .+-++.+.+.- ....++-.++++.+....+...++. ..+.++.+
T Consensus 208 ~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giI 265 (318)
T PRK10416 208 LHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGII 265 (318)
T ss_pred CcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEE
Confidence 222222 12223332211 0123344577777766554444433 24566554
No 358
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=26.56 E-value=3.7e+02 Score=30.63 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=33.6
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
++.++++++.- ..++|||+..+-.+.++..+++.+|||...
T Consensus 239 l~~v~~~~~~~---~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 239 LRAVSQIARAP---EPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHhc---CCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 67777777642 236999999999999999999999999764
No 359
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=26.55 E-value=4.4e+02 Score=30.81 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHH-cCCCEEEE
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE-AGMDVHLG 1115 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~-aG~d~yL~ 1115 (1131)
+++++.||+. .+.+|||+=-.-...++..+|++ .|+|+.++
T Consensus 191 ~~~i~~v~~~----~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 191 WEAIKAVREN----VPDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred HHHHHHHHHh----CcCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 8999999975 23488887766667789999998 89999876
No 360
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.52 E-value=2.1e+02 Score=30.58 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=53.3
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEc
Q 042553 1016 INLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALT 1094 (1131)
Q Consensus 1016 ~~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalT 1094 (1131)
..|++.+. -|....+.++|++..+.-. .-.+=++.+.|-.-+.+++++.+|+.. +++ +|..-
T Consensus 3 ~~l~~~~iiaVir~~~~~~a~~~~~al~------------~gGi~~iEiT~~t~~a~~~I~~l~~~~----p~~-~vGAG 65 (196)
T PF01081_consen 3 ERLKENKIIAVIRGDDPEDAVPIAEALI------------EGGIRAIEITLRTPNALEAIEALRKEF----PDL-LVGAG 65 (196)
T ss_dssp HHHHHHSEEEEETTSSGGGHHHHHHHHH------------HTT--EEEEETTSTTHHHHHHHHHHHH----TTS-EEEEE
T ss_pred HHHhhCCEEEEEEcCCHHHHHHHHHHHH------------HCCCCEEEEecCCccHHHHHHHHHHHC----CCC-eeEEE
Confidence 34455453 2444556666666554310 012334566666778999999998763 243 44444
Q ss_pred ccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1095 AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1095 a~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
.-.+.++.++|+++|++-.++ |.--.++.+..+
T Consensus 66 TV~~~e~a~~a~~aGA~FivS-P~~~~~v~~~~~ 98 (196)
T PF01081_consen 66 TVLTAEQAEAAIAAGAQFIVS-PGFDPEVIEYAR 98 (196)
T ss_dssp S--SHHHHHHHHHHT-SEEEE-SS--HHHHHHHH
T ss_pred eccCHHHHHHHHHcCCCEEEC-CCCCHHHHHHHH
Confidence 456678999999999995555 655455554443
No 361
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=25.90 E-value=4.1e+02 Score=27.10 Aligned_cols=56 Identities=16% Similarity=0.045 Sum_probs=40.5
Q ss_pred CccEEEEcCCCCCCCHH-------HHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1055 PYDYILMDCEMPIMNGY-------EATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1055 ~~DlILmDi~MP~mdG~-------e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..|.|.++...+...+. ..++.++. ...+||++..+-...++..++++.|+|.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-----GSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-----cCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 57899988877754432 33444433 2468999988887779999999999998764
No 362
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.78 E-value=6.2e+02 Score=32.94 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=63.3
Q ss_pred CeEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH--HHH
Q 042553 999 KKILVADDSMM---LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG--YEA 1073 (1131)
Q Consensus 999 ~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG--~e~ 1073 (1131)
++|.++.-|.. ..+.++.+-+..|..+..+.+..+..+.++.. ..+|+||+|- |+++- -++
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~------------~~~D~VLIDT--AGRs~~d~~l 281 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL------------GDKHLVLIDT--VGMSQRDRNV 281 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh------------cCCCEEEEeC--CCCCccCHHH
Confidence 47777766542 23566677777888888888888877777653 2689999994 55321 224
Q ss_pred HHHHhhhhccCCCCccEEEEcccCCHHHHH---HHHHc----CCCEEEE
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHISGEEAD---KTIEA----GMDVHLG 1115 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~~~~~~~---~~l~a----G~d~yL~ 1115 (1131)
.+.++.......+.-.+++|.+....++.. +.+.. +.+++|.
T Consensus 282 ~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIl 330 (767)
T PRK14723 282 SEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCII 330 (767)
T ss_pred HHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEE
Confidence 555554332233445678888876665544 34432 5676643
No 363
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=25.56 E-value=3.3e+02 Score=29.54 Aligned_cols=67 Identities=28% Similarity=0.308 Sum_probs=51.5
Q ss_pred EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcC-------CCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCH
Q 042553 1027 ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDC-------EMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG 1099 (1131)
Q Consensus 1027 ~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi-------~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~ 1099 (1131)
.+.+-+||.++.+. .+|.|..-- .++.-.|++.++++++.. .+|++++-+- +.
T Consensus 110 S~h~~eea~~A~~~--------------g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~-----~iP~vAIGGi-~~ 169 (211)
T COG0352 110 STHDLEEALEAEEL--------------GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV-----NIPVVAIGGI-NL 169 (211)
T ss_pred ecCCHHHHHHHHhc--------------CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC-----CCCEEEEcCC-CH
Confidence 45688888887664 378888743 345678999999998753 4899999875 56
Q ss_pred HHHHHHHHcCCCEE
Q 042553 1100 EEADKTIEAGMDVH 1113 (1131)
Q Consensus 1100 ~~~~~~l~aG~d~y 1113 (1131)
+.....+++|+++.
T Consensus 170 ~nv~~v~~~Ga~gV 183 (211)
T COG0352 170 ENVPEVLEAGADGV 183 (211)
T ss_pred HHHHHHHHhCCCeE
Confidence 77889999999976
No 364
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.53 E-value=2.5e+02 Score=31.89 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=46.0
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHH
Q 042553 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104 (1131)
Q Consensus 1025 v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~ 1104 (1131)
...+.+-+||.++++. .+|+|++|-+-| -+=-++++.++ ...| +..++.-..+....
T Consensus 198 eVEv~tleea~ea~~~--------------gaDiI~LDn~s~-e~l~~av~~~~-------~~~~-leaSGGI~~~ni~~ 254 (281)
T PRK06106 198 EVEVDTLDQLEEALEL--------------GVDAVLLDNMTP-DTLREAVAIVA-------GRAI-TEASGRITPETAPA 254 (281)
T ss_pred EEEeCCHHHHHHHHHc--------------CCCEEEeCCCCH-HHHHHHHHHhC-------CCce-EEEECCCCHHHHHH
Confidence 4568999999999975 589999994333 22222333222 1233 77888888999988
Q ss_pred HHHcCCCEE
Q 042553 1105 TIEAGMDVH 1113 (1131)
Q Consensus 1105 ~l~aG~d~y 1113 (1131)
..+.|+|-.
T Consensus 255 yA~tGVD~I 263 (281)
T PRK06106 255 IAASGVDLI 263 (281)
T ss_pred HHhcCCCEE
Confidence 889999865
No 365
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=25.46 E-value=1.8e+02 Score=30.97 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=38.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcC
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGA--TVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDC 1063 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~--~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi 1063 (1131)
.++++||-|.-...+++..++.+++ .+. ...|...++..+... .+||+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~------------~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR------------EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC------------CcccEEEeCC
Confidence 5799999999999999999988873 333 334444555554431 2599999995
No 366
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.38 E-value=78 Score=27.76 Aligned_cols=53 Identities=26% Similarity=0.322 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCc
Q 042553 382 RAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSI-LDTSKVEAGKMQ 438 (1131)
Q Consensus 382 RTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndl-Ldlskie~g~~~ 438 (1131)
.+||.++....++ ..+.+.++..+..+-..-.-+..-++.| |||+|+|+.+-+
T Consensus 27 ~NPl~AMa~i~qL----Gip~eKLQ~lm~~VMqnP~LikeAv~ELgLDFsKve~Ak~k 80 (82)
T PF11212_consen 27 QNPLAAMATIQQL----GIPQEKLQQLMAQVMQNPALIKEAVEELGLDFSKVEAAKAK 80 (82)
T ss_pred hCHHHHHHHHHHc----CCCHHHHHHHHHHHhcChHHHHHHHHHhCCcHHHHHHHHHh
Confidence 4788887655543 1233444444444333333333344444 899999876544
No 367
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=25.30 E-value=6.5e+02 Score=27.13 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=39.9
Q ss_pred EEEEcCCCCCC---CHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1058 YILMDCEMPIM---NGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1058 lILmDi~MP~m---dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++++|+..-++ --+++++++++. ..+||++-.+-.+.++..++++.|+++++.
T Consensus 163 iii~~~~~~g~~~g~~~~~i~~i~~~-----~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 163 IIYTDISRDGTLSGPNFELYKELAAA-----TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred EEEEeecCCCccCCCCHHHHHHHHHh-----cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 56777644222 226888888764 268999999888899999999999999754
No 368
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=25.03 E-value=3.4e+02 Score=32.64 Aligned_cols=38 Identities=8% Similarity=0.123 Sum_probs=31.1
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLH 739 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~ 739 (1131)
..++++++++...+..+...+..+|+.+..+.+..+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al 41 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTAL 41 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 34688999999999999999999999988777766543
No 369
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=25.03 E-value=3.1e+02 Score=32.35 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=52.8
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEc------------CCCCCCCHHHHHHHHhh
Q 042553 1014 AEINLRHLGATVEA--CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMD------------CEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1014 l~~~L~~~g~~v~~--a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmD------------i~MP~mdG~e~~r~IR~ 1079 (1131)
+..+.+..+..|.. +.+.++|.++++. ..|.|+.- +..|. .+++..+++
T Consensus 180 l~~~i~~~~IPVI~G~V~t~e~A~~~~~a--------------GaDgV~~G~gg~~~~~~~lg~~~p~---~~ai~d~~~ 242 (369)
T TIGR01304 180 LKEFIGELDVPVIAGGVNDYTTALHLMRT--------------GAAGVIVGPGGANTTRLVLGIEVPM---ATAIADVAA 242 (369)
T ss_pred HHHHHHHCCCCEEEeCCCCHHHHHHHHHc--------------CCCEEEECCCCCcccccccCCCCCH---HHHHHHHHH
Confidence 44555556666654 6788888888874 36666521 11221 123333321
Q ss_pred ----hhccC-CCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1080 ----EEKRN-QVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1080 ----~~~~~-~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..... ...+|||+=-+-....+..+|+.+|||..+.
T Consensus 243 a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 243 ARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred HHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeee
Confidence 11111 1258999999999999999999999998753
No 370
>PRK04302 triosephosphate isomerase; Provisional
Probab=25.01 E-value=8.2e+02 Score=26.44 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=31.1
Q ss_pred HHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1072 EATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1072 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++++.+|+. ..++||++-.+-...++...+++.|+|+++.
T Consensus 162 ~~~~~ir~~----~~~~pvi~GggI~~~e~~~~~~~~gadGvlV 201 (223)
T PRK04302 162 DAVEAVKKV----NPDVKVLCGAGISTGEDVKAALELGADGVLL 201 (223)
T ss_pred HHHHHHHhc----cCCCEEEEECCCCCHHHHHHHHcCCCCEEEE
Confidence 455667753 2358999888888889999999999999864
No 371
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=24.93 E-value=1.9e+02 Score=39.75 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=31.9
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLH 739 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~ 739 (1131)
..++++++|++..+..+...|+.+|+.+..+.+..+..
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al 995 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQAL 995 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHH
Confidence 46789999999999999999999999998877766543
No 372
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.76 E-value=8.2e+02 Score=28.93 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=36.7
Q ss_pred CccEEEEcCC-------CCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1055 PYDYILMDCE-------MPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1055 ~~DlILmDi~-------MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..|+|.++.. .+.-+-.++.+.+++. .+|||+ ..-.+.++..+++++|+|..+.
T Consensus 154 Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~------~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 154 GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL------DVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CCCEEEEeccchhhhccCCcCCHHHHHHHHHHC------CCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 6899999753 2222455555555542 589987 3345678888999999999754
No 373
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=24.70 E-value=6.5e+02 Score=28.54 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEE------EECCCCHHHHHHHH
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH------LGKPLNRDHLMEAI 1127 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y------L~KP~~~~~L~~~I 1127 (1131)
.++.++++|+. .++|||+..+-.+.++..+++.+|+|.. +..|.-..++.+-+
T Consensus 222 ~l~~v~~i~~~-----~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 222 ALRMVYQVYQA-----VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred cHHHHHHHHHh-----CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHH
Confidence 36777888763 2689999999999999999999999865 33454444544444
No 374
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=24.62 E-value=3.1e+02 Score=29.69 Aligned_cols=33 Identities=12% Similarity=0.363 Sum_probs=23.0
Q ss_pred eEEEEEeCHHHHHHHHHHHHHc-CCeee-ecccHH
Q 042553 704 HVVLLIANEERRRIAQKFMENL-GINVS-AVSRWE 736 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~-g~~~~-~~~~~~ 736 (1131)
++++++|++..+..+..++... |+.+. .+.+..
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 37 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLE 37 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHH
Confidence 5788888888888888888763 66543 344443
No 375
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=24.58 E-value=5.1e+02 Score=27.33 Aligned_cols=35 Identities=3% Similarity=0.197 Sum_probs=28.8
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
++++++++...+..+...+...|+.+..+.+....
T Consensus 12 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~ 46 (240)
T PRK10710 12 RILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEV 46 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHH
Confidence 68888999999999999999999988776665543
No 376
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=24.51 E-value=3.4e+02 Score=29.41 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=57.8
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEE--EEc-CCCCCCCHHHHHHHHhhhhccCCCCc
Q 042553 1014 AEINLRHLGA--TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYI--LMD-CEMPIMNGYEATRKIREEEKRNQVHI 1088 (1131)
Q Consensus 1014 l~~~L~~~g~--~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlI--LmD-i~MP~mdG~e~~r~IR~~~~~~~~~i 1088 (1131)
....|++.|. .++.+-+..||+...+.+ .|.| ++. +.--+.||+++++.+++.-+..+.++
T Consensus 93 A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG--------------a~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~t 158 (213)
T TIGR00875 93 AVKILKKEGIKTNVTLVFSAAQALLAAKAG--------------ATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDT 158 (213)
T ss_pred HHHHHHHCCCceeEEEecCHHHHHHHHHcC--------------CCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCC
Confidence 3456777786 456788999999988753 2221 110 11114689999999998766556678
Q ss_pred cEEEEcccCCHHHHHHHHHcCCCEE
Q 042553 1089 PIIALTAHISGEEADKTIEAGMDVH 1113 (1131)
Q Consensus 1089 pIIalTa~~~~~~~~~~l~aG~d~y 1113 (1131)
+|++-+-+ ...+..++..+|+|.+
T Consensus 159 kIlaAS~r-~~~~v~~~~~~G~d~v 182 (213)
T TIGR00875 159 EVIAASVR-HPRHVLEAALIGADIA 182 (213)
T ss_pred EEEEeccC-CHHHHHHHHHcCCCEE
Confidence 87766554 5677778889999955
No 377
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=24.29 E-value=3.8e+02 Score=30.24 Aligned_cols=71 Identities=24% Similarity=0.188 Sum_probs=48.4
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHH
Q 042553 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104 (1131)
Q Consensus 1025 v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~ 1104 (1131)
-..+.+.+||.++++. ..|.|.+|-.-|. +=-++.+.+|+. .+++|+++.-+ -..+....
T Consensus 187 gVev~t~eea~~A~~~--------------gaD~I~ld~~~p~-~l~~~~~~~~~~----~~~i~i~AsGG-I~~~ni~~ 246 (272)
T cd01573 187 VVEVDSLEEALAAAEA--------------GADILQLDKFSPE-ELAELVPKLRSL----APPVLLAAAGG-INIENAAA 246 (272)
T ss_pred EEEcCCHHHHHHHHHc--------------CCCEEEECCCCHH-HHHHHHHHHhcc----CCCceEEEECC-CCHHHHHH
Confidence 4568899999998764 5899999965553 112334444432 23678777654 57788889
Q ss_pred HHHcCCCEEEE
Q 042553 1105 TIEAGMDVHLG 1115 (1131)
Q Consensus 1105 ~l~aG~d~yL~ 1115 (1131)
..++|+|.+..
T Consensus 247 ~~~~Gvd~I~v 257 (272)
T cd01573 247 YAAAGADILVT 257 (272)
T ss_pred HHHcCCcEEEE
Confidence 99999998743
No 378
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.28 E-value=2.9e+02 Score=33.03 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=40.3
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1055 PYDYILMDCEMPI-MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1055 ~~DlILmDi~MP~-mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
..|+|.+|+.-+. ..-.+++++||+. .++++||+ -.-.+.+....++++|+|...
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~----~p~~~vi~-g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTK----YPNLDLIA-GNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhh----CCCCcEEE-EecCCHHHHHHHHHcCCCEEE
Confidence 5899999998874 4556788888874 34566543 333457888899999999864
No 379
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=24.14 E-value=3.6e+02 Score=29.52 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=38.5
Q ss_pred EEEEcCCCCC-CC--HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1058 YILMDCEMPI-MN--GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1058 lILmDi~MP~-md--G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+++.|+.--+ .. -++++++|++. ..+||++--+-.+.++..++++.|++..+.
T Consensus 44 i~i~d~~~~~~~~~~~~~~i~~i~~~-----~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 44 LVFLDITASSEGRETMLDVVERVAEE-----VFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred EEEEcCCcccccCcccHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 6666766321 11 25678888764 258999998888899999999999987654
No 380
>PRK10742 putative methyltransferase; Provisional
Probab=24.10 E-value=4.8e+02 Score=29.08 Aligned_cols=97 Identities=9% Similarity=0.048 Sum_probs=59.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhC------CC----EEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC
Q 042553 998 GKKILVADDSMMLRRVAEINLRHL------GA----TVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP 1066 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~------g~----~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP 1066 (1131)
|.+|..+|-++....+++.-|++. +. .+. ...|..+.+.... ..||+|.+|-+-|
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~--------------~~fDVVYlDPMfp 175 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT--------------PRPQVVYLDPMFP 175 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC--------------CCCcEEEECCCCC
Confidence 556999999999999999988874 21 122 2355555554321 2599999999999
Q ss_pred CCCHH-HHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEEC
Q 042553 1067 IMNGY-EATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116 (1131)
Q Consensus 1067 ~mdG~-e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1116 (1131)
.-.-- ...+.+|.... ++-.....++..+.|+...-.-.+.|
T Consensus 176 ~~~ksa~vkk~mr~~~~--------l~g~d~d~~~lL~~Al~~A~kRVVVK 218 (250)
T PRK10742 176 HKQKSALVKKEMRVFQS--------LVGPDLDADGLLEPARLLATKRVVVK 218 (250)
T ss_pred CCccccchhhhHHHHHH--------hcCCCCChHHHHHHHHHhcCceEEEe
Confidence 75422 22334443210 11222334566667777666666666
No 381
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=24.08 E-value=3e+02 Score=25.47 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHHHHHHHHHHHHHc
Q 042553 408 NLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMR 463 (1131)
Q Consensus 408 ~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~~v~~~~~~~a~~ 463 (1131)
.-+.+...+++|+.++|+||.......+..... ...++.+-.+.+++....+.++
T Consensus 26 f~~~ld~~s~rll~l~n~ll~~~~~~~~~~~~~-~~~d~d~~~~~vvd~~D~LlEk 80 (91)
T PF08066_consen 26 FAESLDEQSQRLLSLINSLLKSAGSKSNISSPD-DVDDVDERWDSVVDVNDSLLEK 80 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCCC-ccccHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999998776554433221 3455666666666655555443
No 382
>PRK00811 spermidine synthase; Provisional
Probab=24.03 E-value=2.8e+02 Score=31.36 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=44.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCC------CEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH-
Q 042553 999 KKILVADDSMMLRRVAEINLRHLG------ATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG- 1070 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g------~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG- 1070 (1131)
.+|.+||=++...++++..+...+ -.+ ....|+.+.+... . ..||+|++|+.-|..-+
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-~-------------~~yDvIi~D~~dp~~~~~ 166 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-E-------------NSFDVIIVDSTDPVGPAE 166 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-C-------------CcccEEEECCCCCCCchh
Confidence 479999999999999998886432 123 3456776655431 1 36999999986664222
Q ss_pred ----HHHHHHHhhh
Q 042553 1071 ----YEATRKIREE 1080 (1131)
Q Consensus 1071 ----~e~~r~IR~~ 1080 (1131)
-++.+.+++.
T Consensus 167 ~l~t~ef~~~~~~~ 180 (283)
T PRK00811 167 GLFTKEFYENCKRA 180 (283)
T ss_pred hhhHHHHHHHHHHh
Confidence 3455566554
No 383
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=23.90 E-value=3.1e+02 Score=28.40 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=25.5
Q ss_pred EEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 706 VLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 706 ll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
+++++++..+..+...++..|+.+..+.+....
T Consensus 2 liidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~ 34 (218)
T TIGR01387 2 LVVEDEQKTAEYLQQGLSESGYVVDAASNGRDG 34 (218)
T ss_pred EEEECCHHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 577788888888888999889887776665543
No 384
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.65 E-value=3.5e+02 Score=28.64 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHH
Q 042553 1028 CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE 1107 (1131)
Q Consensus 1028 a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~ 1107 (1131)
|.+..|+.+..+.+ +|+|-. .--+.+-|.+.++.++.. .+++|++++-+ -+.+....+++
T Consensus 112 ~~t~~e~~~A~~~G--------------adyv~~-Fpt~~~~G~~~l~~~~~~----~~~ipvvaiGG-I~~~n~~~~l~ 171 (187)
T PRK07455 112 ALTPTEIVTAWQAG--------------ASCVKV-FPVQAVGGADYIKSLQGP----LGHIPLIPTGG-VTLENAQAFIQ 171 (187)
T ss_pred cCCHHHHHHHHHCC--------------CCEEEE-CcCCcccCHHHHHHHHhh----CCCCcEEEeCC-CCHHHHHHHHH
Q ss_pred cCCCEE
Q 042553 1108 AGMDVH 1113 (1131)
Q Consensus 1108 aG~d~y 1113 (1131)
+|++.+
T Consensus 172 aGa~~v 177 (187)
T PRK07455 172 AGAIAV 177 (187)
T ss_pred CCCeEE
No 385
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.56 E-value=4e+02 Score=30.22 Aligned_cols=68 Identities=15% Similarity=0.052 Sum_probs=47.7
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHH
Q 042553 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104 (1131)
Q Consensus 1025 v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~ 1104 (1131)
-..+.+.+|+.+++.. .+|+|.+|-. |.|.++++.+..+ +++|+.+.- .-..+....
T Consensus 193 ~VEv~tleea~eA~~~--------------gaD~I~LD~~-----~~e~l~~~v~~~~---~~i~leAsG-GIt~~ni~~ 249 (277)
T PRK05742 193 EVEVESLDELRQALAA--------------GADIVMLDEL-----SLDDMREAVRLTA---GRAKLEASG-GINESTLRV 249 (277)
T ss_pred EEEeCCHHHHHHHHHc--------------CCCEEEECCC-----CHHHHHHHHHHhC---CCCcEEEEC-CCCHHHHHH
Confidence 3467899999998865 5899999843 4555665554321 357777655 456788888
Q ss_pred HHHcCCCEEEE
Q 042553 1105 TIEAGMDVHLG 1115 (1131)
Q Consensus 1105 ~l~aG~d~yL~ 1115 (1131)
+.++|+|.+-+
T Consensus 250 ~a~tGvD~Isv 260 (277)
T PRK05742 250 IAETGVDYISI 260 (277)
T ss_pred HHHcCCCEEEE
Confidence 99999997643
No 386
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=23.55 E-value=5.7e+02 Score=26.69 Aligned_cols=79 Identities=24% Similarity=0.355 Sum_probs=56.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCCCCCCCCCCCCccEE---EEcCCCCCC-C
Q 042553 1001 ILVADDSMMLRRVAEINLRHLGATVEACE-------NGEAALQLVRSGLNDQRDLGAPHILPYDYI---LMDCEMPIM-N 1069 (1131)
Q Consensus 1001 ILvvdD~~~~~~~l~~~L~~~g~~v~~a~-------ng~eAl~~~~~~~~~~~~~~~~~~~~~DlI---LmDi~MP~m-d 1069 (1131)
|||=|-+...++.+...-+..|..|...+ +|+|.++++.+. ++|-| |=|...++. -
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a-------------~~DPV~VMfDD~G~~g~G~ 69 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQA-------------PHDPVLVMFDDKGFIGEGP 69 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhC-------------CCCCEEEEEeCCCCCCCCc
Confidence 67777788888888888889999988755 799999999875 34422 236767654 5
Q ss_pred HHHHHHHHhhhhccCCCCcc---EEEEcccC
Q 042553 1070 GYEATRKIREEEKRNQVHIP---IIALTAHI 1097 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ip---IIalTa~~ 1097 (1131)
|-++++.+-.+ +++- +||+.+++
T Consensus 70 GE~Al~~v~~h-----~~IeVLG~iAVASnT 95 (180)
T PF14097_consen 70 GEQALEYVANH-----PDIEVLGAIAVASNT 95 (180)
T ss_pred cHHHHHHHHcC-----CCceEEEEEEEEecC
Confidence 77788888654 3443 55665554
No 387
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=23.47 E-value=3e+02 Score=29.62 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=35.7
Q ss_pred CHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE--ECCCCHHHHHHHH
Q 042553 1069 NGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL--GKPLNRDHLMEAI 1127 (1131)
Q Consensus 1069 dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL--~KP~~~~~L~~~I 1127 (1131)
..++.++.+|+. ..+||++...-........++++|+|..+ ..-+..+.+.+.+
T Consensus 59 g~~~~~~~i~~~-----v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~ 114 (217)
T cd00331 59 GSLEDLRAVREA-----VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELY 114 (217)
T ss_pred CCHHHHHHHHHh-----cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHH
Confidence 456777888764 25898876544556678889999999987 3333334444443
No 388
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=23.44 E-value=7.2e+02 Score=30.06 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=51.2
Q ss_pred CCCeEEEEeCCH---HHHHHHHHHHHhCCCEEEEECC---H----HHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCC-
Q 042553 997 RGKKILVADDSM---MLRRVAEINLRHLGATVEACEN---G----EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEM- 1065 (1131)
Q Consensus 997 ~~~~ILvvdD~~---~~~~~l~~~L~~~g~~v~~a~n---g----~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~M- 1065 (1131)
.+.+|++|+-|. .....+...-+..|..+..+.+ . .++++.+.. ..||+||+|.-=
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~-------------~~~DvVIIDTaGr 193 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE-------------NGFDVVIVDTAGR 193 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh-------------cCCCEEEEeCCCc
Confidence 357899998874 2233344445566766665543 3 233443332 269999999632
Q ss_pred -C-CCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHH--HHH--HcCCCEEE
Q 042553 1066 -P-IMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD--KTI--EAGMDVHL 1114 (1131)
Q Consensus 1066 -P-~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~--~~l--~aG~d~yL 1114 (1131)
+ +.+..+-++.+... ..++-.++++.+....+... +.+ ..+.++.+
T Consensus 194 ~~~d~~l~~eL~~i~~~---~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giI 245 (428)
T TIGR00959 194 LQIDEELMEELAAIKEI---LNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVV 245 (428)
T ss_pred cccCHHHHHHHHHHHHh---hCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEE
Confidence 1 11233334444332 22333466666554433322 223 24666654
No 389
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=23.31 E-value=5.7e+02 Score=30.90 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=64.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
+.+++||.|.+.. ..++.+.+.......-.-..++..+.+.. .|+.++=-. .+.=|+-+++.+
T Consensus 290 ~~~l~ivG~G~~~-~~l~~~~~~~~V~f~G~v~~~ev~~~~~~---------------aDv~V~pS~-~E~~g~~vlEAm 352 (465)
T PLN02871 290 GARLAFVGDGPYR-EELEKMFAGTPTVFTGMLQGDELSQAYAS---------------GDVFVMPSE-SETLGFVVLEAM 352 (465)
T ss_pred CcEEEEEeCChHH-HHHHHHhccCCeEEeccCCHHHHHHHHHH---------------CCEEEECCc-ccccCcHHHHHH
Confidence 4678999887643 34444444433333334455777777764 588775322 233344555555
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHc---CCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEA---GMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~a---G~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
- ..+|||+-..... .+.++. |-.+++..|-+.++|.++|..+
T Consensus 353 A-------~G~PVI~s~~gg~----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~l 397 (465)
T PLN02871 353 A-------SGVPVVAARAGGI----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETL 397 (465)
T ss_pred H-------cCCCEEEcCCCCc----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 3 2589986543322 233444 8899999999999999988765
No 390
>PLN02335 anthranilate synthase
Probab=23.27 E-value=1.8e+02 Score=31.78 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=44.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEc-CCC-CCCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMD-CEM-PIMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmD-i~M-P~mdG~e~~r 1075 (1131)
..+|||+|-..-.-..+...|++.|+.+.++.+....++.+.. ..||.|++- =-| |...| ...+
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~-------------~~~d~iVisgGPg~p~d~~-~~~~ 83 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKR-------------KNPRGVLISPGPGTPQDSG-ISLQ 83 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHh-------------cCCCEEEEcCCCCChhhcc-chHH
Confidence 4589999865555566778888899988877653211232322 146666552 212 22222 2344
Q ss_pred HHhhhhccCCCCccEEEEc
Q 042553 1076 KIREEEKRNQVHIPIIALT 1094 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalT 1094 (1131)
.+++. ...+||+.+.
T Consensus 84 ~~~~~----~~~~PiLGIC 98 (222)
T PLN02335 84 TVLEL----GPLVPLFGVC 98 (222)
T ss_pred HHHHh----CCCCCEEEec
Confidence 55543 2358998876
No 391
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=23.25 E-value=2.8e+02 Score=31.90 Aligned_cols=76 Identities=5% Similarity=-0.056 Sum_probs=46.0
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC--CCCC---CHHHHHHHHhhhhccCCCCccEEEEcccCCH
Q 042553 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE--MPIM---NGYEATRKIREEEKRNQVHIPIIALTAHISG 1099 (1131)
Q Consensus 1025 v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~--MP~m---dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~ 1099 (1131)
...+.+-+||.+++.-. .......|+|++|-+ -|.- +--++-+.++.. .... .+-.++.-..
T Consensus 207 eVEv~tleea~ea~~~~--------~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~----~~~~-~lEaSGGIt~ 273 (308)
T PLN02716 207 EVETRTLEEVKEVLEYL--------SDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI----NGRF-ETEASGNVTL 273 (308)
T ss_pred EEEECCHHHHHHHHHhc--------ccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh----CCCc-eEEEECCCCH
Confidence 45688999999998710 000115899999943 1221 222222222221 1123 4778888889
Q ss_pred HHHHHHHHcCCCEE
Q 042553 1100 EEADKTIEAGMDVH 1113 (1131)
Q Consensus 1100 ~~~~~~l~aG~d~y 1113 (1131)
+........|+|-.
T Consensus 274 ~ni~~yA~tGVD~I 287 (308)
T PLN02716 274 DTVHKIGQTGVTYI 287 (308)
T ss_pred HHHHHHHHcCCCEE
Confidence 99988889999854
No 392
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=23.24 E-value=2.3e+02 Score=30.63 Aligned_cols=54 Identities=30% Similarity=0.388 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhccCCCCccEEEEccc----------CCHHHHHHHHHcCCCEEEE------CC--CCHHHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAH----------ISGEEADKTIEAGMDVHLG------KP--LNRDHLMEAIKY 1129 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~----------~~~~~~~~~l~aG~d~yL~------KP--~~~~~L~~~I~~ 1129 (1131)
++.++.+|+. ..+|||.++.+ ...+....|.++|+|-.+. +| -...++.+.+++
T Consensus 45 ~~~i~~i~~~-----~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 45 VEDIKAIRAV-----VDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred HHHHHHHHHh-----CCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 5566666653 14566544321 1234566777777773322 34 455555555543
No 393
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=23.19 E-value=3.1e+02 Score=30.84 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=47.8
Q ss_pred EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHH
Q 042553 1024 TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEAD 1103 (1131)
Q Consensus 1024 ~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~ 1103 (1131)
--..+.+-+||.++.+. ..|.|.+|-.-| +-++++.+.- ..++||++. +.-..+...
T Consensus 181 Igvev~t~eea~~A~~~--------------gaDyI~ld~~~~-----e~lk~~v~~~---~~~ipi~As-GGI~~~ni~ 237 (265)
T TIGR00078 181 IEVEVESLEEAEEAAEA--------------GADIIMLDNMKP-----EEIKEAVQLL---KGRVLLEAS-GGITLDNLE 237 (265)
T ss_pred EEEEeCCHHHHHHHHHc--------------CCCEEEECCCCH-----HHHHHHHHHh---cCCCcEEEE-CCCCHHHHH
Confidence 34578999999999865 589999997544 4455554431 113787664 445678888
Q ss_pred HHHHcCCCEEE
Q 042553 1104 KTIEAGMDVHL 1114 (1131)
Q Consensus 1104 ~~l~aG~d~yL 1114 (1131)
...++|+|.+-
T Consensus 238 ~~a~~Gvd~Is 248 (265)
T TIGR00078 238 EYAETGVDVIS 248 (265)
T ss_pred HHHHcCCCEEE
Confidence 99999999764
No 394
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=23.17 E-value=6.3e+02 Score=27.18 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=43.1
Q ss_pred CccEEEEcCCCCC---------CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHH---HHHcCCCEEEECCC-CHH
Q 042553 1055 PYDYILMDCEMPI---------MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK---TIEAGMDVHLGKPL-NRD 1121 (1131)
Q Consensus 1055 ~~DlILmDi~MP~---------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~---~l~aG~d~yL~KP~-~~~ 1121 (1131)
.+|.|++|+.-.. .+-.++++.++... .....+++=....+.....+ +++.|+++++.-=+ +.+
T Consensus 21 g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~---~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~gI~lP~ves~~ 97 (221)
T PF03328_consen 21 GADFVILDLEDGVPPDEKDEAREDLAEALRSIRAAR---AAGSEIIVRVNSLDSPHIERDLEALDAGADGIVLPKVESAE 97 (221)
T ss_dssp CSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHT---TSSSEEEEE-SSTTCHHHHHHHHHHHTTSSEEEETT--SHH
T ss_pred CCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccc---cccccceecCCCCCcchhhhhhhhcccCCCeeeccccCcHH
Confidence 7999999998766 44456666665532 11233333333333334445 99999999866434 566
Q ss_pred HHHHHHHH
Q 042553 1122 HLMEAIKY 1129 (1131)
Q Consensus 1122 ~L~~~I~~ 1129 (1131)
++...++.
T Consensus 98 ~~~~~~~~ 105 (221)
T PF03328_consen 98 DARQAVAA 105 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 395
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=22.96 E-value=1.9e+02 Score=35.70 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=37.9
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1055 PYDYILMDCEMPI-MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1055 ~~DlILmDi~MP~-mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
..|+|.+|+.=.. ..-++.+++||+. .+.+||++ -.-.+.++...+.++|+|...
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~----~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSN----YPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhh----CCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 5899999984211 1226888999875 23577776 223456788899999999774
No 396
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.43 E-value=2.2e+02 Score=31.98 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEccc------CCHHHHHHHHHcCCCEEEECCCCHHHHH
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAH------ISGEEADKTIEAGMDVHLGKPLNRDHLM 1124 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KP~~~~~L~ 1124 (1131)
.++.++++|+. ..+|+|+||=. ..+....+|.++|+|+.+.=-+..++..
T Consensus 79 ~~~~~~~~r~~-----~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~ 134 (263)
T CHL00200 79 ILSILSEVNGE-----IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESD 134 (263)
T ss_pred HHHHHHHHhcC-----CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHH
Confidence 45555555531 23565555532 2233455566666666665444444433
No 397
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=22.19 E-value=4.2e+02 Score=28.27 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=20.2
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcC
Q 042553 704 HVVLLIANEERRRIAQKFMENLG 726 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g 726 (1131)
++++++|++..+..+..+++.+|
T Consensus 3 ~IlIvdd~~~~~~~l~~~l~~~~ 25 (238)
T PRK11697 3 KVLIVDDEPLAREELRELLQEEG 25 (238)
T ss_pred EEEEECCCHHHHHHHHHHHhhCC
Confidence 57888899989999999999888
No 398
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.08 E-value=6e+02 Score=28.62 Aligned_cols=79 Identities=13% Similarity=0.010 Sum_probs=50.3
Q ss_pred EEEeCCHHH---HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHH
Q 042553 1002 LVADDSMML---RRVAEINLRHLGATVEA-------CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGY 1071 (1131)
Q Consensus 1002 LvvdD~~~~---~~~l~~~L~~~g~~v~~-------a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~ 1071 (1131)
+|.+|++.- ...++..+++.|.++.. ..|-...+..++.. .+|+|++-.. ..++.
T Consensus 142 il~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~-------------~pd~v~~~~~--~~~~~ 206 (312)
T cd06346 142 TTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAG-------------GPDALVVIGY--PETGS 206 (312)
T ss_pred EEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc-------------CCCEEEEecc--cchHH
Confidence 444666543 34567778888987653 24566667776653 6899998644 34888
Q ss_pred HHHHHHhhhhccCCCCccEEEEcccCCH
Q 042553 1072 EATRKIREEEKRNQVHIPIIALTAHISG 1099 (1131)
Q Consensus 1072 e~~r~IR~~~~~~~~~ipIIalTa~~~~ 1099 (1131)
.+++++++. +...|++..++-..+
T Consensus 207 ~~~~~~~~~----G~~~~~~~~~~~~~~ 230 (312)
T cd06346 207 GILRSAYEQ----GLFDKFLLTDGMKSD 230 (312)
T ss_pred HHHHHHHHc----CCCCceEeeccccCh
Confidence 888888875 235567665443333
No 399
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=22.01 E-value=9.7e+02 Score=25.44 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=42.2
Q ss_pred ccEEEEcCCCCCCCH-------HHHHHHHhhhhccCCCCc-cEEEEcccCCHHHHHHHHHcCCCEEE-----ECCCCHHH
Q 042553 1056 YDYILMDCEMPIMNG-------YEATRKIREEEKRNQVHI-PIIALTAHISGEEADKTIEAGMDVHL-----GKPLNRDH 1122 (1131)
Q Consensus 1056 ~DlILmDi~MP~mdG-------~e~~r~IR~~~~~~~~~i-pIIalTa~~~~~~~~~~l~aG~d~yL-----~KP~~~~~ 1122 (1131)
.|.|+++..-|+..| ++-++++|+.... ..+ |.|++.+--..+...++.++|+|.++ .+.-++.+
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~--~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~ 209 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDE--RGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKE 209 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHh--cCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHH
Confidence 677777765565544 3455555543211 122 55667666677888889999999774 44445554
Q ss_pred HHHHHH
Q 042553 1123 LMEAIK 1128 (1131)
Q Consensus 1123 L~~~I~ 1128 (1131)
....++
T Consensus 210 ~~~~~~ 215 (220)
T PRK05581 210 AIDSLR 215 (220)
T ss_pred HHHHHH
Confidence 444443
No 400
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=21.95 E-value=4.3e+02 Score=27.93 Aligned_cols=36 Identities=17% Similarity=0.057 Sum_probs=24.7
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCC-e-eeecccHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGI-N-VSAVSRWERL 738 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~-~-~~~~~~~~~l 738 (1131)
.+++++++++..+..+..+|+..+. . +..+.+..++
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~ 41 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTAL 41 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHH
Confidence 4688888888888888888887664 2 3344444443
No 401
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=21.65 E-value=5.1e+02 Score=32.80 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=57.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENG-EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng-~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
+..+.++|.|+...+.+ ++.|+.+...+-. .+.++... ....|+++.-..=+ .+-..+++.
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~ag-------------i~~A~~vv~~~~d~-~~n~~i~~~ 484 (601)
T PRK03659 423 KMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAG-------------AEKAEAIVITCNEP-EDTMKIVEL 484 (601)
T ss_pred CCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhcC-------------CccCCEEEEEeCCH-HHHHHHHHH
Confidence 45688888887654433 4467776654322 23333322 13567777754333 233566777
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEEC
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1116 (1131)
+|+. .++++||+-+. +.++..+..++|+|..+.-
T Consensus 485 ~r~~----~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 485 CQQH----FPHLHILARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred HHHH----CCCCeEEEEeC--CHHHHHHHHhCCCCEEEcc
Confidence 7765 45788887664 3567778889999987643
No 402
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=21.53 E-value=5.3e+02 Score=35.45 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=67.6
Q ss_pred CeEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-CCCH
Q 042553 999 KKILVA----DDSMMLRRVAEINLRHLGATVEACE---NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-IMNG 1070 (1131)
Q Consensus 999 ~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~a~---ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-~mdG 1070 (1131)
.+||++ |-|.+-..++..+|+..||+|.-.. ..++.++.+.+. .+|+|.+-.-|. .|..
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~-------------~~diVgLS~L~t~s~~~ 818 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEE-------------NADIIGLSGLITPSLDE 818 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh-------------CCCEEEEcCcchhhHHH
Confidence 478888 8888888899999999999998643 456677777663 799999988775 3433
Q ss_pred -HHHHHHHhhhhccCCCCccEEEEcccCCHHH-HHHH--HHcCCCEEEE
Q 042553 1071 -YEATRKIREEEKRNQVHIPIIALTAHISGEE-ADKT--IEAGMDVHLG 1115 (1131)
Q Consensus 1071 -~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~-~~~~--l~aG~d~yL~ 1115 (1131)
.++++.+|+. +..+||++--+-.+... ..++ --+|+|.|..
T Consensus 819 m~~~i~~L~~~----g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~ 863 (1229)
T PRK09490 819 MVHVAKEMERQ----GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVT 863 (1229)
T ss_pred HHHHHHHHHhc----CCCCeEEEEeeccchhhhhhhhhhcccCCcEEec
Confidence 4456777664 34688776655544333 1121 1138888843
No 403
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=21.17 E-value=8.2e+02 Score=27.77 Aligned_cols=79 Identities=13% Similarity=0.091 Sum_probs=46.5
Q ss_pred CeEE-EEeCCHH---HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC
Q 042553 999 KKIL-VADDSMM---LRRVAEINLRHLGATVEAC-------ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI 1067 (1131)
Q Consensus 999 ~~IL-vvdD~~~---~~~~l~~~L~~~g~~v~~a-------~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~ 1067 (1131)
.+|. |.+|++- ....+...+++.|.+|... .|-...+..++. ..+|+|++... .
T Consensus 142 ~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~-------------~~~d~i~~~~~--~ 206 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKA-------------AGPDAVVVAGH--F 206 (345)
T ss_pred ceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHh-------------cCCCEEEECCc--c
Confidence 3444 4444432 3445667788889887531 244445555554 26899998653 4
Q ss_pred CCHHHHHHHHhhhhccCCCCccEEEEccc
Q 042553 1068 MNGYEATRKIREEEKRNQVHIPIIALTAH 1096 (1131)
Q Consensus 1068 mdG~e~~r~IR~~~~~~~~~ipIIalTa~ 1096 (1131)
.+...+++++++. +...+++..+..
T Consensus 207 ~~~~~~~~~~~~~----g~~~~~~~~~~~ 231 (345)
T cd06338 207 PDAVLLVRQMKEL----GYNPKALYMTVG 231 (345)
T ss_pred hhHHHHHHHHHHc----CCCCCEEEEecC
Confidence 4677778888765 334567665443
No 404
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=21.13 E-value=4.5e+02 Score=32.82 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=51.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENG-EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng-~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
+..++++|.|+...+.+ ++.|+.+...+-. .++++... ....|.++.-..=+..+ ..++..
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a~-------------i~~a~~viv~~~~~~~~-~~iv~~ 501 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLAH-------------LDCARWLLLTIPNGYEA-GEIVAS 501 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhcC-------------ccccCEEEEEcCChHHH-HHHHHH
Confidence 34577777776543332 3456665554322 33333322 23578776654322111 235556
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+|+. .++.+||+-+. +++......++|+|..+.
T Consensus 502 ~~~~----~~~~~iiar~~--~~~~~~~l~~~Gad~vv~ 534 (558)
T PRK10669 502 AREK----RPDIEIIARAH--YDDEVAYITERGANQVVM 534 (558)
T ss_pred HHHH----CCCCeEEEEEC--CHHHHHHHHHcCCCEEEC
Confidence 6664 34678888764 356666777899996663
No 405
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=21.06 E-value=4.9e+02 Score=28.13 Aligned_cols=88 Identities=22% Similarity=0.169 Sum_probs=57.5
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEc-CCCCCCCHHHHHHHHhhhhccCCCCccE
Q 042553 1014 AEINLRHLGA--TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMD-CEMPIMNGYEATRKIREEEKRNQVHIPI 1090 (1131)
Q Consensus 1014 l~~~L~~~g~--~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmD-i~MP~mdG~e~~r~IR~~~~~~~~~ipI 1090 (1131)
....|++.|. .++.+-+..||+...+.+. .|=-.+++ +.=-+.||+++++.+++.-+..+..+.|
T Consensus 93 ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA------------~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tki 160 (211)
T cd00956 93 AIKKLSEEGIKTNVTAIFSAAQALLAAKAGA------------TYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKI 160 (211)
T ss_pred HHHHHHHcCCceeeEEecCHHHHHHHHHcCC------------CEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceE
Confidence 3345666675 4667899999999987641 22111111 1113679999999998876655555666
Q ss_pred EEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1091 IALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1091 IalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
++-+.. ...+...+..+|+|-+-
T Consensus 161 l~As~r-~~~ei~~a~~~Gad~vT 183 (211)
T cd00956 161 LAASIR-NPQHVIEAALAGADAIT 183 (211)
T ss_pred EecccC-CHHHHHHHHHcCCCEEE
Confidence 655554 56777789999999553
No 406
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=20.98 E-value=3.3e+02 Score=30.69 Aligned_cols=54 Identities=31% Similarity=0.384 Sum_probs=41.1
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
-+++++.|+. .++.+-|=+= -.+.++..+++++|+|-.+.--++++++.++++.
T Consensus 175 ~~Av~~aR~~----~~~~~kIEVE-vesle~~~eAl~agaDiImLDNm~~e~~~~av~~ 228 (280)
T COG0157 175 TEAVRRARAA----APFTKKIEVE-VESLEEAEEALEAGADIIMLDNMSPEELKEAVKL 228 (280)
T ss_pred HHHHHHHHHh----CCCCceEEEE-cCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHH
Confidence 4567777765 3455544333 2457888999999999999999999999999876
No 407
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=20.96 E-value=6.3e+02 Score=29.13 Aligned_cols=50 Identities=24% Similarity=0.462 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHH-cCCCEEE------ECCCCHHHHH
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE-AGMDVHL------GKPLNRDHLM 1124 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~-aG~d~yL------~KP~~~~~L~ 1124 (1131)
.++.++++++. ..+|||+.-+-.+.++..++++ .|+|+.+ ..|.=..++.
T Consensus 182 ~~~~i~~ik~~-----~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~ 238 (321)
T PRK10415 182 EYDSIRAVKQK-----VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238 (321)
T ss_pred ChHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHH
Confidence 37888888864 3689999988889999999997 6999874 4565444443
No 408
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=20.95 E-value=2.8e+02 Score=34.06 Aligned_cols=55 Identities=25% Similarity=0.279 Sum_probs=39.4
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1055 PYDYILMDCEMPI-MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1055 ~~DlILmDi~MP~-mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
..|+|.+|..-.. .+=++.++.||+. .+++|||+ -.-.+.++...+.++|+|..-
T Consensus 240 gvdvivvD~a~g~~~~vl~~i~~i~~~----~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 240 GVDVLVVDTAHGHSEGVLDRVREIKAK----YPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHhh----CCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 5899999975333 3446778888764 24678887 334557888899999999874
No 409
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=20.92 E-value=5.3e+02 Score=28.20 Aligned_cols=53 Identities=26% Similarity=0.298 Sum_probs=39.7
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHc-CCCEEEE-CC-----CCHHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA-GMDVHLG-KP-----LNRDHLMEAIK 1128 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~a-G~d~yL~-KP-----~~~~~L~~~I~ 1128 (1131)
+++++++++. ..+|+|+.-+-.+.++..++++. |+|+.+. ++ ++.+++.+.++
T Consensus 182 ~~~i~~i~~~-----~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 182 LELIRAVSSA-----VNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEYLA 241 (243)
T ss_pred HHHHHHHHhh-----CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHHHh
Confidence 7788888763 36899999988899999999997 9998765 22 45566655544
No 410
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.92 E-value=6.7e+02 Score=30.85 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEC------CHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC-HHHHHHHHhh
Q 042553 1008 MMLRRVAEINLRHLG-ATVEACE------NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN-GYEATRKIRE 1079 (1131)
Q Consensus 1008 ~~~~~~l~~~L~~~g-~~v~~a~------ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md-G~e~~r~IR~ 1079 (1131)
|.-...+...|++.| ++|...+ +.++..+.+.+ ..||+|.+-+.-|... ..++++.+|+
T Consensus 22 Plgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~-------------~~pdvVgis~~t~~~~~a~~~~~~~k~ 88 (497)
T TIGR02026 22 PLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRA-------------HCPDLVLITAITPAIYIACETLKFARE 88 (497)
T ss_pred CHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHh-------------cCcCEEEEecCcccHHHHHHHHHHHHH
Confidence 556678888999999 6777653 22333344443 2699999987666442 3566777776
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHH-cCCCEEEECCCCHHHHHHHH
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIE-AGMDVHLGKPLNRDHLMEAI 1127 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~-aG~d~yL~KP~~~~~L~~~I 1127 (1131)
. .+.++||+=-.+.+. .-+++++ ...-||+..==....+.+.+
T Consensus 89 ~----~P~~~iV~GG~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll 132 (497)
T TIGR02026 89 R----LPNAIIVLGGIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLI 132 (497)
T ss_pred H----CCCCEEEEcCCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHH
Confidence 4 356666655444443 2234453 33334555533333344433
No 411
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.90 E-value=7.3e+02 Score=27.09 Aligned_cols=82 Identities=10% Similarity=0.066 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCCCCCCCCCCCCCCcc-EEEEcCC-CCCC--CHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHH
Q 042553 1030 NGEAALQLVRSGLNDQRDLGAPHILPYD-YILMDCE-MPIM--NGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKT 1105 (1131)
Q Consensus 1030 ng~eAl~~~~~~~~~~~~~~~~~~~~~D-lILmDi~-MP~m--dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~ 1105 (1131)
+..+..+.+.+ . ++ ++++|+. +-.- .-++++++|++ ...+||++=-+-.+.++..++
T Consensus 31 dp~~~a~~~~~-------------~-~~~l~ivDldga~~g~~~n~~~i~~i~~-----~~~~pv~~gGGIrs~edv~~l 91 (228)
T PRK04128 31 DPVEIALRFSE-------------Y-VDKIHVVDLDGAFEGKPKNLDVVKNIIR-----ETGLKVQVGGGLRTYESIKDA 91 (228)
T ss_pred CHHHHHHHHHH-------------h-CCEEEEEECcchhcCCcchHHHHHHHHh-----hCCCCEEEcCCCCCHHHHHHH
Q ss_pred HHcCCCEEEE--CCCCHHHHHHHHHHh
Q 042553 1106 IEAGMDVHLG--KPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1106 l~aG~d~yL~--KP~~~~~L~~~I~~l 1130 (1131)
+++|++..+. .-++++.+.+..++.
T Consensus 92 ~~~G~~~vivGtaa~~~~~l~~~~~~~ 118 (228)
T PRK04128 92 YEIGVENVIIGTKAFDLEFLEKVTSEF 118 (228)
T ss_pred HHCCCCEEEECchhcCHHHHHHHHHHc
No 412
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.90 E-value=4.8e+02 Score=29.05 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=39.0
Q ss_pred cEEEEcCCCCC-CC--HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHH-HcCCCEEE
Q 042553 1057 DYILMDCEMPI-MN--GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI-EAGMDVHL 1114 (1131)
Q Consensus 1057 DlILmDi~MP~-md--G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l-~aG~d~yL 1114 (1131)
.++++|+.--+ +. -+++++++++. ..+|||+-.+-.+.++..+++ +.|+++.+
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~~~-----~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFRNA-----LKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHHhh-----CCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 36667664322 12 26778888763 368999999999999999999 79999764
No 413
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.89 E-value=8.4e+02 Score=24.29 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 042553 409 LRQMNVCANDL 419 (1131)
Q Consensus 409 l~~i~~~~~~L 419 (1131)
.+.+..++++|
T Consensus 79 yqHmA~ss~~L 89 (138)
T COG3105 79 YQHMAKSSTSL 89 (138)
T ss_pred HHHHHhhHhhh
Confidence 33444444443
No 414
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.72 E-value=1.8e+02 Score=30.96 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=20.9
Q ss_pred CCccEEEEccc------CCHHHHHHHHHcCCCEEEECCCCHHH
Q 042553 1086 VHIPIIALTAH------ISGEEADKTIEAGMDVHLGKPLNRDH 1122 (1131)
Q Consensus 1086 ~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KP~~~~~ 1122 (1131)
..+|||.++=+ .....++.+.++|+++||.--+.+++
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEE 136 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEE 136 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHH
Confidence 34566655532 23344566667777777765555554
No 415
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.45 E-value=4.6e+02 Score=26.81 Aligned_cols=18 Identities=6% Similarity=0.121 Sum_probs=10.3
Q ss_pred HHHHHHchHhhHHHHHHH
Q 042553 371 SLAFANASHDIRAALAGI 388 (1131)
Q Consensus 371 s~flA~iSHELRTPLt~I 388 (1131)
..|+-.+|+|+..|-.-|
T Consensus 82 ~~fi~~vA~~~~V~~~~v 99 (149)
T PF11694_consen 82 VHFIESVAKDLGVSKEEV 99 (149)
T ss_pred HHHHHHHHHHhCCChheE
Confidence 356666676666554333
No 416
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=20.35 E-value=8.6e+02 Score=28.13 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=54.4
Q ss_pred HHHHhCCCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcC-CC-----CCC-CHHHHHHHHhhhhccCCCC
Q 042553 1016 INLRHLGATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDC-EM-----PIM-NGYEATRKIREEEKRNQVH 1087 (1131)
Q Consensus 1016 ~~L~~~g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi-~M-----P~m-dG~e~~r~IR~~~~~~~~~ 1087 (1131)
..++..|..+ ..+.+.++|..+.+. .+|.|+.-= .- +.. +-+.+..+++.. .+
T Consensus 130 ~~l~~~gi~v~~~v~s~~~A~~a~~~--------------G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~-----~~ 190 (330)
T PF03060_consen 130 ERLHAAGIKVIPQVTSVREARKAAKA--------------GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA-----VD 190 (330)
T ss_dssp HHHHHTT-EEEEEESSHHHHHHHHHT--------------T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH------S
T ss_pred HHHHHcCCccccccCCHHHHHHhhhc--------------CCCEEEEeccccCCCCCccccceeeHHHHHhhh-----cC
Confidence 4577778764 578999999988775 478887641 11 122 357778888875 25
Q ss_pred ccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1088 IPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1088 ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+|||+=-+-.+......++..||++...
T Consensus 191 iPViaAGGI~dg~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 191 IPVIAAGGIADGRGIAAALALGADGVQM 218 (330)
T ss_dssp S-EEEESS--SHHHHHHHHHCT-SEEEE
T ss_pred CcEEEecCcCCHHHHHHHHHcCCCEeec
Confidence 9999988888899999999999999753
No 417
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=20.26 E-value=2.5e+02 Score=29.87 Aligned_cols=69 Identities=23% Similarity=0.208 Sum_probs=47.8
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCC---CCCCHHHHHHHHhhhhccCCCCccEEEEcccCC
Q 042553 1022 GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEM---PIMNGYEATRKIREEEKRNQVHIPIIALTAHIS 1098 (1131)
Q Consensus 1022 g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~M---P~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~ 1098 (1131)
++.|.....-+++-+++.. ..|+|=+|... | ..-.+++++||+. . .++|..-++
T Consensus 45 ~~~V~ITPT~~ev~~l~~a--------------GadIIAlDaT~R~Rp-~~l~~li~~i~~~------~--~l~MADist 101 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA--------------GADIIALDATDRPRP-ETLEELIREIKEK------Y--QLVMADIST 101 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC--------------T-SEEEEE-SSSS-S-S-HHHHHHHHHHC------T--SEEEEE-SS
T ss_pred CCCeEECCCHHHHHHHHHc--------------CCCEEEEecCCCCCC-cCHHHHHHHHHHh------C--cEEeeecCC
Confidence 5678888899999998886 48999999877 5 7778889999874 1 344555567
Q ss_pred HHHHHHHHHcCCCEE
Q 042553 1099 GEEADKTIEAGMDVH 1113 (1131)
Q Consensus 1099 ~~~~~~~l~aG~d~y 1113 (1131)
.++...|.++|+|-.
T Consensus 102 ~ee~~~A~~~G~D~I 116 (192)
T PF04131_consen 102 LEEAINAAELGFDII 116 (192)
T ss_dssp HHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHcCCCEE
Confidence 889999999998843
No 418
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=20.24 E-value=3.6e+02 Score=28.76 Aligned_cols=92 Identities=21% Similarity=0.311 Sum_probs=60.8
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-----CCHHHHHHHHhhhhccCC
Q 042553 1013 VAEINLRHLGATVEA--CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-----MNGYEATRKIREEEKRNQ 1085 (1131)
Q Consensus 1013 ~l~~~L~~~g~~v~~--a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-----mdG~e~~r~IR~~~~~~~ 1085 (1131)
-....|++.|+.+.. +..+...++.+.. .+||.|=+|..+.. .....+++.+....+.
T Consensus 136 ~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~-------------~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~-- 200 (240)
T cd01948 136 ATLRRLRALGVRIALDDFGTGYSSLSYLKR-------------LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHS-- 200 (240)
T ss_pred HHHHHHHHCCCeEEEeCCCCcHhhHHHHHh-------------CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHH--
Confidence 344567788998776 4566666777765 36999999965431 2335566666554332
Q ss_pred CCccEEEEcccCCHHHHHHHHHcCCCE----EEECCCCH
Q 042553 1086 VHIPIIALTAHISGEEADKTIEAGMDV----HLGKPLNR 1120 (1131)
Q Consensus 1086 ~~ipIIalTa~~~~~~~~~~l~aG~d~----yL~KP~~~ 1120 (1131)
..+++| .++-.+.+....+.+.|++. |+.||...
T Consensus 201 ~~~~vi-a~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 201 LGLKVV-AEGVETEEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred CCCeEE-EEecCCHHHHHHHHHcCCCeeeeceeccCCCC
Confidence 244444 67777888888999999863 57788764
No 419
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.10 E-value=3.3e+02 Score=30.16 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCcc
Q 042553 1010 LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIP 1089 (1131)
Q Consensus 1010 ~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ip 1089 (1131)
....+....++.|.......-..++++.+.+ +++-+.=+--.+.+-+.+++.+.+. ..|
T Consensus 57 ~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~---------------~~~~~~KIaS~dl~n~~lL~~~A~t------gkP 115 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFFSTPFDEESVDFLEE---------------LGVPAYKIASGDLTNLPLLEYIAKT------GKP 115 (241)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH---------------HT-SEEEE-GGGTT-HHHHHHHHTT-------S-
T ss_pred HHHHHHHHHHHcCCEEEECCCCHHHHHHHHH---------------cCCCEEEeccccccCHHHHHHHHHh------CCc
Confidence 4456778888999998888888899999865 4455555566677788999998763 479
Q ss_pred EEEEcccCCHHHHHHHH----HcCCCEE
Q 042553 1090 IIALTAHISGEEADKTI----EAGMDVH 1113 (1131)
Q Consensus 1090 IIalTa~~~~~~~~~~l----~aG~d~y 1113 (1131)
||+=|+-+..+++.+++ +.|..+.
T Consensus 116 vIlSTG~stl~EI~~Av~~~~~~~~~~l 143 (241)
T PF03102_consen 116 VILSTGMSTLEEIERAVEVLREAGNEDL 143 (241)
T ss_dssp EEEE-TT--HHHHHHHHHHHHHHCT--E
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCCCE
Confidence 99999999888877765 4565554
No 420
>PRK04457 spermidine synthase; Provisional
Probab=20.07 E-value=7.8e+02 Score=27.42 Aligned_cols=69 Identities=14% Similarity=0.039 Sum_probs=45.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCC--CEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCC----CC-CC
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLG--ATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEM----PI-MN 1069 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g--~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~M----P~-md 1069 (1131)
+.+|..||=++...+..+..+...+ -.+. ...|+.+.+.... ..||+|++|..- |. +.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~--------------~~yD~I~~D~~~~~~~~~~l~ 155 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR--------------HSTDVILVDGFDGEGIIDALC 155 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC--------------CCCCEEEEeCCCCCCCccccC
Confidence 3579999999999999888876432 2333 3567777665321 269999999632 21 22
Q ss_pred HHHHHHHHhhh
Q 042553 1070 GYEATRKIREE 1080 (1131)
Q Consensus 1070 G~e~~r~IR~~ 1080 (1131)
-.++.+.+++.
T Consensus 156 t~efl~~~~~~ 166 (262)
T PRK04457 156 TQPFFDDCRNA 166 (262)
T ss_pred cHHHHHHHHHh
Confidence 35777777664
Done!