Query 042553
Match_columns 1131
No_of_seqs 814 out of 5455
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 12:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 8.7E-37 3E-41 336.8 31.5 225 364-639 14-248 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 1.8E-32 6.2E-37 303.4 32.6 223 364-640 34-257 (268)
3 3jz3_A Sensor protein QSEC; he 100.0 3.7E-34 1.3E-38 307.1 13.8 215 370-640 2-218 (222)
4 2btz_A Pyruvate dehydrogenase 100.0 1.4E-32 4.9E-37 322.7 23.4 216 371-640 96-351 (394)
5 2e0a_A Pyruvate dehydrogenase 100.0 3.2E-32 1.1E-36 319.7 26.2 216 370-640 95-351 (394)
6 1gkz_A [3-methyl-2-oxobutanoat 100.0 6.7E-32 2.3E-36 316.3 25.3 218 366-639 117-373 (388)
7 2q8g_A [pyruvate dehydrogenase 100.0 7.4E-32 2.5E-36 317.9 23.7 215 372-640 107-364 (407)
8 1y8o_A [pyruvate dehydrogenase 100.0 2.6E-31 8.9E-36 314.2 25.6 213 374-640 121-375 (419)
9 3d36_A Sporulation kinase B; G 100.0 5.1E-31 1.7E-35 286.8 22.6 213 369-640 13-226 (244)
10 3a0r_A Sensor protein; four he 100.0 3.6E-31 1.2E-35 303.8 21.4 213 369-639 131-345 (349)
11 4fpp_A Phosphotransferase; fou 100.0 1.5E-29 5E-34 278.0 23.0 196 372-637 48-246 (247)
12 1b3q_A Protein (chemotaxis pro 99.9 2.2E-25 7.5E-30 259.8 18.4 199 368-640 8-249 (379)
13 3to5_A CHEY homolog; alpha(5)b 99.9 1.6E-24 5.4E-29 214.5 17.4 120 997-1131 11-131 (134)
14 1id0_A PHOQ histidine kinase; 99.9 3.2E-23 1.1E-27 208.9 19.6 145 442-640 2-146 (152)
15 1ysr_A Sensor-type histidine k 99.9 6.5E-23 2.2E-27 206.4 19.4 145 440-639 4-149 (150)
16 3ehh_A Sensor kinase (YOCF pro 99.9 1.9E-22 6.5E-27 215.9 23.3 188 370-639 28-216 (218)
17 3a0y_A Sensor protein; ATP-LID 99.9 5.7E-22 2E-26 199.3 19.9 145 440-639 2-148 (152)
18 1bxd_A ENVZ(290-450), protein 99.9 6.6E-22 2.3E-26 201.6 17.4 146 438-640 4-151 (161)
19 1r62_A Nitrogen regulation pro 99.9 8.4E-22 2.9E-26 199.7 15.3 156 438-639 2-159 (160)
20 3sl2_A Sensor histidine kinase 99.9 1.7E-21 5.9E-26 201.9 17.5 148 443-641 2-154 (177)
21 1i58_A Chemotaxis protein CHEA 99.8 1E-20 3.4E-25 198.3 13.4 147 441-638 2-188 (189)
22 2lpm_A Two-component response 99.8 4.5E-22 1.5E-26 193.6 2.4 113 997-1131 7-120 (123)
23 3gl9_A Response regulator; bet 99.8 2.2E-19 7.5E-24 173.9 17.8 117 999-1130 3-119 (122)
24 3luf_A Two-component system re 99.8 3.3E-19 1.1E-23 196.8 20.4 118 999-1130 125-242 (259)
25 2ayx_A Sensor kinase protein R 99.8 2.3E-18 7.8E-23 189.5 24.0 117 997-1130 128-244 (254)
26 3m6m_D Sensory/regulatory prot 99.8 9.9E-19 3.4E-23 174.4 17.7 122 996-1130 12-133 (143)
27 3t6k_A Response regulator rece 99.8 1.3E-18 4.4E-23 171.9 17.9 118 998-1130 4-121 (136)
28 2r25_B Osmosensing histidine p 99.8 1.5E-18 5E-23 170.8 17.6 121 999-1130 3-124 (133)
29 3f6p_A Transcriptional regulat 99.8 1.9E-18 6.6E-23 166.6 16.7 114 999-1130 3-116 (120)
30 3h1g_A Chemotaxis protein CHEY 99.8 2.8E-18 9.4E-23 167.6 17.1 119 998-1130 5-124 (129)
31 3n0r_A Response regulator; sig 99.8 2.7E-19 9.1E-24 200.4 9.4 113 998-1130 160-274 (286)
32 3mm4_A Histidine kinase homolo 99.8 4E-18 1.4E-22 181.4 17.3 134 995-1130 58-193 (206)
33 3rqi_A Response regulator prot 99.8 1.9E-18 6.5E-23 180.2 13.8 117 997-1130 6-122 (184)
34 3ehg_A Sensor kinase (YOCF pro 99.8 5.1E-18 1.7E-22 166.4 15.1 125 444-639 2-126 (128)
35 1dbw_A Transcriptional regulat 99.7 2.6E-17 9.1E-22 159.6 18.0 116 998-1130 3-118 (126)
36 1srr_A SPO0F, sporulation resp 99.7 2.6E-17 8.8E-22 159.1 17.3 115 999-1130 4-118 (124)
37 3crn_A Response regulator rece 99.7 3E-17 1E-21 160.8 17.7 115 999-1130 4-118 (132)
38 1tmy_A CHEY protein, TMY; chem 99.7 3.4E-17 1.1E-21 157.1 17.0 115 999-1130 3-118 (120)
39 2pl1_A Transcriptional regulat 99.7 4.8E-17 1.6E-21 156.1 18.0 114 1000-1130 2-115 (121)
40 3gt7_A Sensor protein; structu 99.7 4.3E-17 1.5E-21 164.5 17.5 118 998-1130 7-124 (154)
41 1mb3_A Cell division response 99.7 2.9E-17 9.8E-22 158.4 15.3 117 999-1130 2-118 (124)
42 3eod_A Protein HNR; response r 99.7 3.6E-17 1.2E-21 159.4 15.7 118 996-1130 5-123 (130)
43 1jbe_A Chemotaxis protein CHEY 99.7 7.7E-17 2.6E-21 156.5 17.4 118 998-1130 4-122 (128)
44 3zxo_A Redox sensor histidine 99.7 2.3E-17 8E-22 161.2 13.7 127 441-639 2-128 (129)
45 3r0j_A Possible two component 99.7 5.5E-17 1.9E-21 177.6 17.8 117 997-1130 22-138 (250)
46 1xhf_A DYE resistance, aerobic 99.7 1.2E-16 4.1E-21 154.0 17.8 114 999-1130 4-117 (123)
47 1i3c_A Response regulator RCP1 99.7 9.6E-17 3.3E-21 160.8 17.5 125 998-1130 8-134 (149)
48 3hv2_A Response regulator/HD d 99.7 1.1E-16 3.9E-21 160.9 18.1 117 997-1130 13-130 (153)
49 1zgz_A Torcad operon transcrip 99.7 1.3E-16 4.4E-21 153.5 17.7 114 999-1130 3-116 (122)
50 2a9o_A Response regulator; ess 99.7 1.1E-16 3.9E-21 153.0 17.1 114 999-1130 2-115 (120)
51 3heb_A Response regulator rece 99.7 9.4E-17 3.2E-21 161.2 17.3 127 998-1130 4-132 (152)
52 3hzh_A Chemotaxis response reg 99.7 9E-17 3.1E-21 162.6 17.2 119 998-1131 36-155 (157)
53 3b2n_A Uncharacterized protein 99.7 8.6E-17 2.9E-21 157.8 16.5 115 999-1130 4-120 (133)
54 3ilh_A Two component response 99.7 9.3E-17 3.2E-21 159.3 16.8 125 998-1130 9-136 (146)
55 1dcf_A ETR1 protein; beta-alph 99.7 8.7E-17 3E-21 158.1 16.3 120 997-1130 6-126 (136)
56 3kto_A Response regulator rece 99.7 2.6E-17 9E-22 162.1 12.4 115 999-1130 7-123 (136)
57 3lua_A Response regulator rece 99.7 3.5E-17 1.2E-21 161.8 13.2 119 998-1130 4-124 (140)
58 1p6q_A CHEY2; chemotaxis, sign 99.7 6.3E-17 2.2E-21 157.3 14.8 117 999-1130 7-124 (129)
59 3cfy_A Putative LUXO repressor 99.7 8.6E-17 2.9E-21 158.9 15.7 114 1000-1130 6-119 (137)
60 3hdv_A Response regulator; PSI 99.7 1.6E-16 5.5E-21 156.0 17.4 118 998-1130 7-124 (136)
61 3i42_A Response regulator rece 99.7 4.7E-17 1.6E-21 157.9 13.1 116 999-1130 4-119 (127)
62 2qzj_A Two-component response 99.7 1.3E-16 4.3E-21 157.5 16.1 114 999-1130 5-118 (136)
63 3hdg_A Uncharacterized protein 99.7 1E-16 3.5E-21 157.7 15.4 116 998-1130 7-122 (137)
64 3grc_A Sensor protein, kinase; 99.7 6.1E-17 2.1E-21 159.9 13.8 118 998-1130 6-124 (140)
65 3dzd_A Transcriptional regulat 99.7 3.5E-17 1.2E-21 189.7 13.4 115 999-1130 1-115 (368)
66 3jte_A Response regulator rece 99.7 2.7E-16 9.1E-21 155.9 18.0 117 999-1130 4-120 (143)
67 3snk_A Response regulator CHEY 99.7 1.5E-17 5E-22 163.6 8.6 117 998-1131 14-131 (135)
68 1k68_A Phytochrome response re 99.7 2.5E-16 8.7E-21 154.6 17.2 125 998-1130 2-128 (140)
69 3kht_A Response regulator; PSI 99.7 1.6E-16 5.5E-21 157.8 15.9 118 998-1130 5-125 (144)
70 4dad_A Putative pilus assembly 99.7 5.5E-17 1.9E-21 161.6 12.2 119 997-1130 19-138 (146)
71 1mvo_A PHOP response regulator 99.7 1.9E-16 6.4E-21 155.4 15.5 115 999-1130 4-118 (136)
72 4e7p_A Response regulator; DNA 99.7 2.7E-16 9.1E-21 157.6 16.8 117 997-1130 19-137 (150)
73 3c3m_A Response regulator rece 99.7 2.1E-16 7.1E-21 156.1 15.7 117 999-1130 4-120 (138)
74 3nhm_A Response regulator; pro 99.7 2.1E-16 7.1E-21 154.5 15.1 116 998-1130 4-119 (133)
75 1dz3_A Stage 0 sporulation pro 99.7 1.8E-16 6.3E-21 154.5 14.6 116 999-1130 3-120 (130)
76 1zh2_A KDP operon transcriptio 99.7 2.9E-16 9.8E-21 150.5 15.5 114 999-1130 2-115 (121)
77 3f6c_A Positive transcription 99.7 8.6E-17 2.9E-21 157.4 11.9 115 999-1130 2-117 (134)
78 3a10_A Response regulator; pho 99.7 1.5E-16 5E-21 151.7 13.1 113 999-1130 2-114 (116)
79 1k66_A Phytochrome response re 99.7 4.3E-16 1.5E-20 154.9 16.7 126 998-1130 6-135 (149)
80 3lte_A Response regulator; str 99.7 5.2E-16 1.8E-20 151.4 16.7 117 998-1130 6-122 (132)
81 3h5i_A Response regulator/sens 99.7 1.2E-16 4.1E-21 158.3 12.0 117 997-1130 4-121 (140)
82 3eul_A Possible nitrate/nitrit 99.7 5E-16 1.7E-20 155.9 16.7 117 997-1130 14-132 (152)
83 3cnb_A DNA-binding response re 99.7 7.5E-16 2.6E-20 152.1 17.4 118 998-1130 8-127 (143)
84 3q9s_A DNA-binding response re 99.7 2.8E-16 9.5E-21 172.3 15.6 116 997-1130 36-151 (249)
85 2jba_A Phosphate regulon trans 99.7 8.9E-17 3E-21 155.6 10.1 117 999-1130 3-119 (127)
86 3kcn_A Adenylate cyclase homol 99.7 6.7E-16 2.3E-20 154.9 16.7 116 998-1130 4-120 (151)
87 1yio_A Response regulatory pro 99.7 1.7E-16 6E-21 168.1 13.0 116 998-1130 4-119 (208)
88 1a04_A Nitrate/nitrite respons 99.7 5.4E-16 1.9E-20 165.3 16.6 115 999-1130 6-122 (215)
89 3zxq_A Hypoxia sensor histidin 99.7 4.3E-16 1.5E-20 151.2 14.4 122 445-639 2-123 (124)
90 2rjn_A Response regulator rece 99.7 9.6E-16 3.3E-20 154.2 17.5 117 997-1130 6-123 (154)
91 2zay_A Response regulator rece 99.7 4.6E-16 1.6E-20 154.9 14.6 118 998-1130 8-125 (147)
92 2qxy_A Response regulator; reg 99.7 7.4E-16 2.5E-20 152.5 15.4 115 998-1130 4-118 (142)
93 2qr3_A Two-component system re 99.7 1.1E-15 3.9E-20 150.4 16.2 116 998-1130 3-123 (140)
94 3cg0_A Response regulator rece 99.7 1.3E-15 4.3E-20 150.1 16.4 116 997-1130 8-125 (140)
95 2jk1_A HUPR, hydrogenase trans 99.7 1E-15 3.6E-20 151.1 15.6 114 999-1130 2-116 (139)
96 3n53_A Response regulator rece 99.7 2.8E-16 9.6E-21 155.3 11.4 117 998-1130 3-119 (140)
97 1kgs_A DRRD, DNA binding respo 99.7 7.4E-16 2.5E-20 165.2 15.6 115 999-1130 3-117 (225)
98 3cu5_A Two component transcrip 99.7 3.2E-16 1.1E-20 155.6 11.7 115 999-1130 3-120 (141)
99 1w25_A Stalked-cell differenti 99.6 8.1E-16 2.8E-20 183.7 16.6 117 999-1130 2-118 (459)
100 1qkk_A DCTD, C4-dicarboxylate 99.6 1.2E-15 4.3E-20 153.5 15.4 116 998-1130 3-118 (155)
101 3cz5_A Two-component response 99.6 1.5E-15 5.1E-20 152.6 15.9 116 998-1130 5-122 (153)
102 3cg4_A Response regulator rece 99.6 3.9E-16 1.3E-20 154.4 11.4 119 997-1130 6-124 (142)
103 3eq2_A Probable two-component 99.6 3.6E-16 1.2E-20 183.1 13.1 114 999-1129 6-120 (394)
104 1s8n_A Putative antiterminator 99.6 8.8E-16 3E-20 162.5 14.3 114 999-1130 14-128 (205)
105 2qvg_A Two component response 99.6 1.9E-15 6.4E-20 149.6 15.5 123 998-1129 7-131 (143)
106 1ny5_A Transcriptional regulat 99.6 1.2E-15 4E-20 178.1 16.0 114 1000-1130 2-115 (387)
107 1ys7_A Transcriptional regulat 99.6 8.8E-16 3E-20 165.6 12.9 116 998-1130 7-122 (233)
108 3eqz_A Response regulator; str 99.6 6.6E-16 2.3E-20 151.0 10.7 115 998-1130 3-122 (135)
109 2gkg_A Response regulator homo 99.6 2.1E-15 7.3E-20 145.3 14.0 116 999-1130 6-122 (127)
110 2pln_A HP1043, response regula 99.6 1.1E-14 3.6E-19 143.3 17.5 113 996-1130 16-130 (137)
111 3c97_A Signal transduction his 99.6 2.1E-15 7.2E-20 149.1 12.3 116 999-1130 11-127 (140)
112 2gwr_A DNA-binding response re 99.6 2.3E-15 8E-20 163.3 13.7 114 999-1130 6-119 (238)
113 3kyj_B CHEY6 protein, putative 99.6 1.3E-15 4.5E-20 151.5 10.3 117 997-1130 12-142 (145)
114 3bre_A Probable two-component 99.6 2.4E-15 8.1E-20 173.4 13.5 116 999-1129 19-135 (358)
115 2oqr_A Sensory transduction pr 99.6 3.2E-15 1.1E-19 160.9 13.6 114 999-1130 5-118 (230)
116 2j48_A Two-component sensor ki 99.6 4.6E-15 1.6E-19 140.7 12.8 114 999-1130 2-115 (119)
117 2qv0_A Protein MRKE; structura 99.6 8.3E-15 2.8E-19 145.0 15.1 114 998-1130 9-124 (143)
118 2rdm_A Response regulator rece 99.6 1E-14 3.4E-19 142.1 15.4 116 997-1130 4-120 (132)
119 2qsj_A DNA-binding response re 99.6 3.1E-15 1.1E-19 150.3 11.7 116 999-1130 4-121 (154)
120 3t8y_A CHEB, chemotaxis respon 99.6 1.2E-14 4E-19 148.4 15.9 115 998-1130 25-152 (164)
121 1p2f_A Response regulator; DRR 99.6 6.9E-15 2.4E-19 157.3 14.3 112 999-1130 3-114 (220)
122 1th8_A Anti-sigma F factor; SP 99.6 4.7E-15 1.6E-19 148.3 11.9 102 485-640 35-140 (145)
123 3c3w_A Two component transcrip 99.6 1.2E-15 4.3E-20 164.2 7.9 115 999-1130 2-118 (225)
124 3klo_A Transcriptional regulat 99.6 1.2E-15 4.1E-20 164.1 7.3 116 999-1130 8-126 (225)
125 2b4a_A BH3024; flavodoxin-like 99.6 5.1E-15 1.7E-19 145.8 10.8 114 996-1130 13-128 (138)
126 3sy8_A ROCR; TIM barrel phosph 99.6 3.5E-15 1.2E-19 175.1 11.2 116 999-1130 4-125 (400)
127 1mu5_A Type II DNA topoisomera 99.6 6.7E-15 2.3E-19 174.4 13.4 113 483-640 26-149 (471)
128 2zbk_B Type 2 DNA topoisomeras 99.6 5.4E-15 1.8E-19 177.0 12.7 111 485-640 27-148 (530)
129 1dc7_A NTRC, nitrogen regulati 99.5 2.5E-16 8.5E-21 151.4 -1.5 115 999-1130 4-118 (124)
130 1qo0_D AMIR; binding protein, 99.5 7.8E-15 2.7E-19 154.1 8.8 112 997-1130 11-122 (196)
131 2hqr_A Putative transcriptiona 99.5 5.6E-14 1.9E-18 150.5 15.1 110 1000-1130 2-112 (223)
132 3luf_A Two-component system re 99.5 1.3E-14 4.5E-19 160.0 8.8 102 999-1120 5-107 (259)
133 1a2o_A CHEB methylesterase; ba 99.5 1.8E-13 6E-18 157.3 15.8 114 999-1130 4-130 (349)
134 1w25_A Stalked-cell differenti 99.5 1.7E-12 5.8E-17 154.8 24.2 115 998-1129 152-266 (459)
135 2vyc_A Biodegradative arginine 99.4 1.1E-13 3.7E-18 174.5 9.3 115 1000-1130 2-130 (755)
136 2q2e_B Type 2 DNA topoisomeras 99.4 3.1E-13 1.1E-17 163.9 9.7 110 483-637 31-152 (621)
137 3cwo_X Beta/alpha-barrel prote 98.8 2E-09 6.8E-14 115.6 5.2 90 1023-1129 6-97 (237)
138 1h7s_A PMS1 protein homolog 2; 98.5 1.9E-07 6.5E-12 107.1 9.0 84 489-625 34-127 (365)
139 1kij_A DNA gyrase subunit B; t 98.4 2.6E-07 9E-12 106.9 7.4 83 484-616 31-129 (390)
140 1b63_A MUTL; DNA mismatch repa 98.3 1.3E-06 4.5E-11 99.2 10.3 85 489-626 24-118 (333)
141 3mm4_A Histidine kinase homolo 98.3 2.2E-06 7.4E-11 90.5 9.9 88 611-744 16-104 (206)
142 3na3_A DNA mismatch repair pro 98.1 5.7E-06 2E-10 93.8 9.7 85 489-626 28-122 (348)
143 3ke6_A Protein RV1364C/MT1410; 98.1 5.4E-06 1.8E-10 96.8 9.5 90 486-640 294-387 (399)
144 3zcc_A HAMP, osmolarity sensor 98.0 1.9E-05 6.4E-10 73.8 9.9 56 368-429 58-113 (114)
145 3h4l_A DNA mismatch repair pro 97.9 1.1E-05 3.6E-10 92.4 7.8 93 489-634 25-127 (367)
146 1ixm_A SPO0B, protein (sporula 97.8 0.00012 4.1E-09 76.2 12.7 140 373-592 24-171 (192)
147 3zrx_A AF1503 protein, osmolar 97.2 0.00088 3E-08 62.1 9.0 57 369-431 59-115 (115)
148 2wer_A ATP-dependent molecular 97.2 0.00022 7.5E-09 76.1 4.4 54 568-625 74-141 (220)
149 2ior_A Chaperone protein HTPG; 96.8 0.00066 2.3E-08 73.0 3.7 54 568-625 95-164 (235)
150 2ayx_A Sensor kinase protein R 96.7 0.0011 3.7E-08 72.1 5.1 96 994-1129 7-102 (254)
151 1qy5_A Endoplasmin; GRP94, NEC 96.6 0.00066 2.3E-08 74.2 2.5 54 568-625 76-148 (269)
152 1s16_A Topoisomerase IV subuni 96.6 0.0058 2E-07 70.5 10.0 47 568-614 64-126 (390)
153 3to5_A CHEY homolog; alpha(5)b 96.5 0.0062 2.1E-07 59.5 8.3 42 702-743 12-54 (134)
154 3cwo_X Beta/alpha-barrel prote 96.0 0.014 4.8E-07 61.7 8.9 72 1055-1129 144-222 (237)
155 1yc1_A HSP 86, heat shock prot 95.9 0.0083 2.8E-07 65.4 6.4 59 568-630 116-188 (264)
156 2lpm_A Two-component response 95.9 0.029 9.9E-07 53.8 9.4 42 702-743 8-50 (123)
157 3n75_A LDC, lysine decarboxyla 95.6 0.0061 2.1E-07 75.7 4.5 93 1012-1123 20-112 (715)
158 1ei1_A DNA gyrase B, GYRB; ATP 95.1 0.053 1.8E-06 62.4 9.5 47 568-614 67-129 (391)
159 2gqp_A Endoplasmin; GRP94, HSP 94.9 0.017 5.7E-07 62.1 4.5 58 568-629 80-156 (236)
160 3r0j_A Possible two component 94.8 0.095 3.3E-06 56.1 10.2 41 703-743 24-64 (250)
161 3m6m_D Sensory/regulatory prot 94.1 0.18 6.1E-06 48.7 9.5 42 701-742 13-54 (143)
162 3h5i_A Response regulator/sens 94.0 0.28 9.5E-06 46.9 10.5 116 702-876 5-120 (140)
163 2yxb_A Coenzyme B12-dependent 93.5 1.2 4.3E-05 44.4 14.6 115 998-1129 18-141 (161)
164 1y4s_A Chaperone protein HTPG; 93.4 0.14 4.9E-06 61.3 8.7 23 568-590 75-97 (559)
165 3t0h_A Heat shock protein HSP 93.2 0.086 2.9E-06 56.1 5.8 60 568-631 80-153 (228)
166 3n0r_A Response regulator; sig 93.0 0.41 1.4E-05 52.6 11.1 111 703-876 161-273 (286)
167 3c8c_A Methyl-accepting chemot 92.9 0.29 9.9E-06 51.1 9.3 80 150-231 88-175 (240)
168 4dah_A Sporulation kinase D; a 92.7 0.11 3.6E-06 54.3 5.5 81 148-231 92-178 (217)
169 3hzh_A Chemotaxis response reg 92.7 0.49 1.7E-05 46.3 10.1 42 703-744 37-79 (157)
170 3gl9_A Response regulator; bet 92.6 0.36 1.2E-05 45.0 8.6 39 703-741 3-41 (122)
171 3ilh_A Two component response 92.4 0.81 2.8E-05 43.5 11.1 43 702-744 9-53 (146)
172 3fv5_A DNA topoisomerase 4 sub 92.3 0.29 9.9E-06 51.0 8.2 54 568-625 50-119 (201)
173 3cg4_A Response regulator rece 92.2 1.3 4.5E-05 41.9 12.4 116 702-876 7-123 (142)
174 3i42_A Response regulator rece 92.2 0.54 1.8E-05 43.8 9.3 40 703-742 4-43 (127)
175 3hv2_A Response regulator/HD d 92.1 0.77 2.6E-05 44.5 10.7 41 702-742 14-54 (153)
176 2b4a_A BH3024; flavodoxin-like 92.0 0.82 2.8E-05 43.3 10.5 38 701-738 14-51 (138)
177 3hdv_A Response regulator; PSI 92.0 0.73 2.5E-05 43.4 10.1 41 702-742 7-47 (136)
178 3a10_A Response regulator; pho 91.9 1.1 3.8E-05 40.7 11.0 39 704-742 3-41 (116)
179 3cg0_A Response regulator rece 91.7 0.63 2.2E-05 44.0 9.4 42 702-743 9-51 (140)
180 2cg9_A ATP-dependent molecular 91.7 0.17 5.8E-06 61.8 6.3 22 568-589 74-95 (677)
181 3t6k_A Response regulator rece 91.6 0.67 2.3E-05 44.0 9.4 40 703-742 5-44 (136)
182 3lif_A Putative diguanylate cy 91.5 0.19 6.4E-06 53.7 5.9 84 148-231 92-182 (254)
183 3lte_A Response regulator; str 91.5 0.71 2.4E-05 43.2 9.4 42 702-743 6-47 (132)
184 3grc_A Sensor protein, kinase; 91.5 0.93 3.2E-05 42.9 10.3 40 703-742 7-46 (140)
185 2j48_A Two-component sensor ki 91.5 0.89 3.1E-05 41.1 9.8 41 703-743 2-42 (119)
186 2r25_B Osmosensing histidine p 91.2 0.52 1.8E-05 44.7 8.0 42 703-744 3-45 (133)
187 2pln_A HP1043, response regula 91.0 0.79 2.7E-05 43.3 9.2 44 700-743 16-59 (137)
188 3f6p_A Transcriptional regulat 91.0 0.52 1.8E-05 43.7 7.7 40 703-742 3-42 (120)
189 1srr_A SPO0F, sporulation resp 90.6 0.99 3.4E-05 41.7 9.3 40 703-742 4-43 (124)
190 2ioq_A Chaperone protein HTPG; 90.5 0.17 5.9E-06 61.5 4.7 22 568-589 75-96 (624)
191 2rdm_A Response regulator rece 90.3 1.2 4.2E-05 41.4 9.8 41 702-742 5-45 (132)
192 1wv2_A Thiazole moeity, thiazo 90.3 1.9 6.4E-05 46.2 11.8 82 1014-1115 127-215 (265)
193 3rqi_A Response regulator prot 90.2 0.39 1.3E-05 48.6 6.5 41 702-742 7-47 (184)
194 3hdg_A Uncharacterized protein 90.2 0.85 2.9E-05 43.0 8.6 42 702-743 7-48 (137)
195 3f6c_A Positive transcription 90.1 1 3.6E-05 42.2 9.1 39 704-742 3-42 (134)
196 3cwv_A DNA gyrase, B subunit, 89.8 0.6 2.1E-05 53.2 8.3 29 486-514 27-58 (369)
197 3eod_A Protein HNR; response r 89.5 0.71 2.4E-05 43.1 7.3 40 701-740 6-45 (130)
198 1tmy_A CHEY protein, TMY; chem 89.5 1.7 5.8E-05 39.7 9.9 40 703-742 3-43 (120)
199 3o0i_A HSP90AA1 protein; HSP90 89.4 0.23 7.8E-06 53.5 4.1 59 568-630 108-180 (256)
200 1mvo_A PHOP response regulator 89.3 1.9 6.6E-05 40.3 10.3 40 703-742 4-43 (136)
201 1mb3_A Cell division response 89.3 1.9 6.6E-05 39.5 10.1 40 703-742 2-41 (124)
202 3nhm_A Response regulator; pro 89.2 2.6 8.9E-05 39.2 11.1 113 703-876 5-118 (133)
203 1zxm_A TOPO IIA ATPase, DNA to 89.2 1 3.5E-05 51.8 9.6 45 568-612 87-147 (400)
204 1dbw_A Transcriptional regulat 89.2 1.5 5.3E-05 40.6 9.4 36 703-738 4-39 (126)
205 1ys7_A Transcriptional regulat 89.2 2.9 0.0001 43.4 12.6 114 703-876 8-121 (233)
206 3lua_A Response regulator rece 89.0 0.96 3.3E-05 42.9 8.0 118 703-877 5-124 (140)
207 3jte_A Response regulator rece 89.0 1.7 5.7E-05 41.3 9.7 40 703-742 4-43 (143)
208 3kto_A Response regulator rece 88.9 1.1 3.7E-05 42.4 8.2 116 703-877 7-123 (136)
209 3crn_A Response regulator rece 88.7 1.8 6.1E-05 40.6 9.6 40 703-742 4-43 (132)
210 4emv_A DNA topoisomerase IV, B 88.4 0.57 1.9E-05 49.6 6.3 47 568-614 73-134 (226)
211 3c97_A Signal transduction his 88.2 2.8 9.7E-05 39.6 10.8 40 703-742 11-50 (140)
212 3h1g_A Chemotaxis protein CHEY 88.2 1.5 5.2E-05 40.9 8.7 38 702-739 5-43 (129)
213 3c3m_A Response regulator rece 88.1 2.2 7.7E-05 40.2 9.9 40 703-742 4-43 (138)
214 3gt7_A Sensor protein; structu 87.9 0.91 3.1E-05 44.1 7.1 40 702-741 7-46 (154)
215 2gkg_A Response regulator homo 87.7 3.2 0.00011 38.0 10.5 41 703-743 6-46 (127)
216 2zay_A Response regulator rece 87.7 1.1 3.7E-05 42.9 7.4 42 702-743 8-49 (147)
217 2rjn_A Response regulator rece 87.6 1.7 5.9E-05 41.9 9.0 39 702-740 7-45 (154)
218 3q7r_A Transcriptional regulat 87.6 2.7 9.4E-05 37.8 8.9 102 999-1130 13-115 (121)
219 1k68_A Phytochrome response re 87.5 1.4 4.7E-05 41.4 7.9 41 702-742 2-44 (140)
220 4duh_A DNA gyrase subunit B; s 87.5 0.41 1.4E-05 50.5 4.4 47 568-614 68-130 (220)
221 2pl1_A Transcriptional regulat 87.4 1.7 5.9E-05 39.6 8.4 39 704-742 2-40 (121)
222 1dcf_A ETR1 protein; beta-alph 87.2 1.8 6.2E-05 40.7 8.6 38 701-738 6-43 (136)
223 3eul_A Possible nitrate/nitrit 87.2 2.6 8.8E-05 40.5 9.9 44 700-743 13-58 (152)
224 3cnb_A DNA-binding response re 87.2 2.1 7.2E-05 40.3 9.1 42 702-743 8-51 (143)
225 2o1u_A Endoplasmin; GRP94, HSP 87.1 0.55 1.9E-05 57.4 5.8 22 568-589 93-114 (666)
226 2qxy_A Response regulator; reg 86.9 1.6 5.3E-05 41.4 8.0 113 703-876 5-117 (142)
227 3by9_A Sensor protein; histidi 86.8 0.81 2.8E-05 48.6 6.5 78 149-231 99-179 (260)
228 1zgz_A Torcad operon transcrip 86.7 2.3 7.8E-05 39.0 8.8 40 703-742 3-42 (122)
229 1xhf_A DYE resistance, aerobic 86.6 2.3 7.8E-05 39.0 8.7 40 703-742 4-43 (123)
230 3heb_A Response regulator rece 86.5 2 6.9E-05 41.3 8.7 41 703-743 5-47 (152)
231 1kgs_A DRRD, DNA binding respo 86.5 2.8 9.6E-05 43.3 10.4 40 703-742 3-42 (225)
232 3cfy_A Putative LUXO repressor 86.4 1.7 5.8E-05 41.2 7.9 40 704-743 6-45 (137)
233 3dzd_A Transcriptional regulat 86.2 1.6 5.5E-05 49.8 8.9 40 704-743 2-41 (368)
234 1s8n_A Putative antiterminator 86.1 2.7 9.2E-05 42.9 9.8 41 703-743 14-55 (205)
235 1k66_A Phytochrome response re 86.1 2.4 8.3E-05 40.1 8.9 42 702-743 6-49 (149)
236 4dad_A Putative pilus assembly 85.9 1.3 4.4E-05 42.4 6.8 38 700-737 18-56 (146)
237 1yio_A Response regulatory pro 85.9 1.7 5.8E-05 44.4 8.2 36 703-738 5-40 (208)
238 2a9o_A Response regulator; ess 85.5 3 0.0001 37.9 8.9 39 704-742 3-41 (120)
239 3snk_A Response regulator CHEY 85.4 0.51 1.7E-05 44.7 3.6 35 702-736 14-49 (135)
240 1qkk_A DCTD, C4-dicarboxylate 85.2 1.5 5.3E-05 42.3 7.1 37 702-738 3-39 (155)
241 2qr3_A Two-component system re 84.7 2.3 7.9E-05 39.9 8.0 40 703-742 4-43 (140)
242 3q58_A N-acetylmannosamine-6-p 84.3 6.4 0.00022 41.6 11.8 82 1014-1115 121-209 (229)
243 4e7p_A Response regulator; DNA 84.2 2.3 7.9E-05 40.8 7.8 40 702-741 20-61 (150)
244 2qzj_A Two-component response 84.1 2.1 7.1E-05 40.5 7.3 40 703-742 5-44 (136)
245 3ttz_A DNA gyrase subunit B; p 84.1 1.6 5.5E-05 45.2 6.8 29 486-514 28-59 (198)
246 3e4o_A C4-dicarboxylate transp 84.1 0.54 1.8E-05 52.3 3.5 80 149-233 140-222 (305)
247 3q9s_A DNA-binding response re 83.8 2.7 9.1E-05 44.8 8.8 40 703-742 38-77 (249)
248 3b2n_A Uncharacterized protein 83.8 4 0.00014 38.1 9.2 39 704-742 5-45 (133)
249 1jbe_A Chemotaxis protein CHEY 83.6 3.3 0.00011 38.2 8.4 37 703-739 5-42 (128)
250 2qvg_A Two component response 83.3 4.2 0.00014 38.3 9.2 40 703-742 8-49 (143)
251 3kht_A Response regulator; PSI 82.8 2.3 7.7E-05 40.4 7.0 39 702-740 5-45 (144)
252 1p6q_A CHEY2; chemotaxis, sign 82.5 3.1 0.00011 38.5 7.7 40 703-742 7-47 (129)
253 1ccw_A Protein (glutamate muta 82.5 11 0.00039 36.2 11.9 107 1005-1128 14-131 (137)
254 3peh_A Endoplasmin homolog; st 82.4 0.86 3E-05 49.6 4.1 55 568-626 94-163 (281)
255 2htm_A Thiazole biosynthesis p 82.3 7.1 0.00024 41.8 11.0 83 1014-1115 116-206 (268)
256 1dz3_A Stage 0 sporulation pro 82.2 5.1 0.00017 37.1 9.2 40 703-742 3-44 (130)
257 3cz5_A Two-component response 81.8 3.7 0.00013 39.4 8.3 41 702-742 5-47 (153)
258 3kcn_A Adenylate cyclase homol 81.7 3.5 0.00012 39.6 8.0 40 703-743 5-44 (151)
259 3n53_A Response regulator rece 81.7 6.4 0.00022 36.9 9.8 40 703-743 4-43 (140)
260 3cu5_A Two component transcrip 81.3 7.2 0.00025 36.9 10.0 34 704-737 4-40 (141)
261 2gwr_A DNA-binding response re 81.1 4 0.00014 42.8 8.8 40 703-742 6-45 (238)
262 2qsj_A DNA-binding response re 80.9 5.1 0.00018 38.3 8.9 40 703-742 4-45 (154)
263 2oqr_A Sensory transduction pr 80.6 4.1 0.00014 42.2 8.6 40 703-742 5-44 (230)
264 2jba_A Phosphate regulon trans 80.4 2.4 8.2E-05 39.1 6.1 35 703-737 3-37 (127)
265 3igs_A N-acetylmannosamine-6-p 80.0 11 0.00039 39.7 11.8 83 1013-1115 120-209 (232)
266 3eqz_A Response regulator; str 79.7 5.5 0.00019 36.9 8.4 35 703-737 4-38 (135)
267 2qv0_A Protein MRKE; structura 79.5 5.7 0.00019 37.4 8.6 41 702-742 9-51 (143)
268 1ny5_A Transcriptional regulat 79.3 5.7 0.00019 45.4 9.9 39 704-742 2-40 (387)
269 2hqr_A Putative transcriptiona 79.0 2.4 8.1E-05 43.9 6.1 38 704-741 2-39 (223)
270 1zh2_A KDP operon transcriptio 79.0 4.4 0.00015 36.7 7.4 36 704-739 3-38 (121)
271 2i2x_B MTAC, methyltransferase 78.7 17 0.00059 38.9 13.0 100 998-1117 123-231 (258)
272 3nmq_A Heat shock protein HSP 78.5 1.1 3.9E-05 47.6 3.3 55 568-626 87-155 (239)
273 1pvg_A DNA topoisomerase II; G 78.1 3.5 0.00012 47.6 7.6 47 568-614 99-161 (418)
274 3eq2_A Probable two-component 76.0 4.6 0.00016 46.1 7.9 41 703-743 6-46 (394)
275 3kyj_B CHEY6 protein, putative 75.6 5.7 0.0002 37.6 7.3 42 701-742 12-55 (145)
276 3lnu_A Topoisomerase IV subuni 75.0 3.6 0.00012 47.2 6.5 47 568-614 83-145 (408)
277 1a04_A Nitrate/nitrite respons 73.6 6.8 0.00023 40.0 7.8 40 703-742 6-47 (215)
278 1dc7_A NTRC, nitrogen regulati 73.2 2.8 9.5E-05 38.3 4.2 34 704-737 5-38 (124)
279 3ezx_A MMCP 1, monomethylamine 73.0 15 0.00052 38.3 10.3 100 998-1115 92-202 (215)
280 1i3c_A Response regulator RCP1 70.8 7.4 0.00025 37.1 6.9 38 703-740 9-48 (149)
281 3lic_A Sensor protein; PDC fol 70.6 4.2 0.00014 43.3 5.5 79 150-231 112-196 (274)
282 3c3w_A Two component transcrip 68.5 6.2 0.00021 40.9 6.1 39 704-742 3-43 (225)
283 3ffs_A Inosine-5-monophosphate 68.2 57 0.002 37.3 14.4 100 999-1114 157-273 (400)
284 2jk1_A HUPR, hydrogenase trans 67.8 15 0.0005 34.4 8.1 36 704-740 3-38 (139)
285 3t8y_A CHEB, chemotaxis respon 66.8 27 0.00092 33.8 10.2 42 702-743 25-68 (164)
286 3lid_A Putative sensory BOX/gg 66.4 12 0.0004 41.0 8.1 82 150-232 112-205 (295)
287 3qja_A IGPS, indole-3-glycerol 65.6 67 0.0023 34.6 13.7 97 1013-1127 153-258 (272)
288 3sy8_A ROCR; TIM barrel phosph 65.3 13 0.00043 42.6 8.4 97 1016-1128 283-390 (400)
289 3li9_A Hypothetical sensory tr 64.7 3.2 0.00011 44.8 3.1 83 147-231 118-204 (291)
290 1y80_A Predicted cobalamin bin 64.5 41 0.0014 34.6 11.4 111 998-1129 88-207 (210)
291 1qo0_D AMIR; binding protein, 64.3 5.5 0.00019 40.1 4.6 31 702-732 12-42 (196)
292 3lib_A Hypothetical sensory tr 62.3 2.9 0.0001 45.2 2.1 83 147-231 117-203 (290)
293 4fo4_A Inosine 5'-monophosphat 61.9 88 0.003 35.3 14.3 100 999-1115 121-239 (366)
294 3klo_A Transcriptional regulat 57.1 13 0.00045 38.3 6.0 29 703-731 8-37 (225)
295 4gfh_A DNA topoisomerase 2; to 55.9 25 0.00084 45.9 9.3 46 568-613 94-155 (1177)
296 1xrs_B D-lysine 5,6-aminomutas 55.2 1.1E+02 0.0036 32.9 12.7 112 998-1127 120-252 (262)
297 1p2f_A Response regulator; DRR 54.0 14 0.00047 37.8 5.5 33 704-737 4-36 (220)
298 1req_A Methylmalonyl-COA mutas 53.7 91 0.0031 38.3 13.3 114 998-1128 596-718 (727)
299 1geq_A Tryptophan synthase alp 53.3 24 0.00084 37.2 7.5 44 1071-1119 69-118 (248)
300 3khj_A Inosine-5-monophosphate 52.9 93 0.0032 35.0 12.5 91 1008-1115 131-235 (361)
301 3kp1_A D-ornithine aminomutase 51.9 71 0.0024 38.4 11.3 112 998-1127 602-729 (763)
302 3o63_A Probable thiamine-phosp 51.4 40 0.0014 35.8 8.7 84 1026-1127 140-235 (243)
303 3bre_A Probable two-component 51.1 12 0.0004 41.7 4.7 41 703-743 19-60 (358)
304 2xij_A Methylmalonyl-COA mutas 50.8 98 0.0034 38.3 12.9 114 999-1129 605-727 (762)
305 3vnd_A TSA, tryptophan synthas 49.8 25 0.00086 37.9 6.8 50 1071-1124 83-138 (267)
306 1yad_A Regulatory protein TENI 49.6 50 0.0017 34.1 9.0 69 1027-1115 116-191 (221)
307 1xi3_A Thiamine phosphate pyro 49.2 67 0.0023 32.6 9.9 74 1021-1114 107-188 (215)
308 2ekc_A AQ_1548, tryptophan syn 48.8 55 0.0019 35.0 9.4 55 1070-1128 81-141 (262)
309 3r2g_A Inosine 5'-monophosphat 48.7 2.1E+02 0.0072 32.1 14.4 96 999-1115 113-227 (361)
310 3tsm_A IGPS, indole-3-glycerol 47.7 1.3E+02 0.0045 32.3 12.1 96 1013-1126 160-264 (272)
311 3l4e_A Uncharacterized peptida 47.3 81 0.0028 32.4 10.1 81 996-1095 25-121 (206)
312 2p10_A MLL9387 protein; putati 46.6 60 0.002 35.1 8.9 86 1017-1116 158-259 (286)
313 3f4w_A Putative hexulose 6 pho 46.3 97 0.0033 31.4 10.6 106 1001-1127 80-203 (211)
314 4avf_A Inosine-5'-monophosphat 46.1 2.1E+02 0.0071 33.5 14.6 101 998-1115 241-360 (490)
315 2xxa_A Signal recognition part 45.9 32 0.0011 39.9 7.4 84 998-1096 129-224 (433)
316 1qop_A Tryptophan synthase alp 45.8 31 0.0011 37.1 6.8 53 1070-1126 81-139 (268)
317 3usb_A Inosine-5'-monophosphat 45.4 2.6E+02 0.0088 32.9 15.3 102 998-1115 268-387 (511)
318 2gjl_A Hypothetical protein PA 45.4 1.6E+02 0.0054 32.3 12.9 81 1016-1115 112-200 (328)
319 1ka9_F Imidazole glycerol phos 44.6 1.5E+02 0.0052 30.9 12.1 54 1071-1129 185-244 (252)
320 3rht_A (gatase1)-like protein; 43.6 11 0.00036 40.7 2.6 78 999-1095 5-87 (259)
321 1y0e_A Putative N-acetylmannos 42.2 1.3E+02 0.0044 30.8 10.8 75 1022-1115 119-203 (223)
322 2w6r_A Imidazole glycerol phos 41.9 93 0.0032 32.9 9.9 52 1071-1127 189-246 (266)
323 1a2o_A CHEB methylesterase; ba 41.8 57 0.0019 36.5 8.5 41 703-743 4-46 (349)
324 1j8m_F SRP54, signal recogniti 41.6 36 0.0012 37.2 6.6 59 997-1070 125-193 (297)
325 2v82_A 2-dehydro-3-deoxy-6-pho 41.2 40 0.0014 34.5 6.6 79 1016-1115 95-175 (212)
326 2c6q_A GMP reductase 2; TIM ba 39.7 4E+02 0.014 29.6 15.0 103 999-1118 133-255 (351)
327 1eep_A Inosine 5'-monophosphat 39.6 1.4E+02 0.0047 34.0 11.4 92 1008-1115 179-284 (404)
328 1geq_A Tryptophan synthase alp 38.9 1.5E+02 0.005 30.9 10.9 84 1012-1116 123-220 (248)
329 1xm3_A Thiazole biosynthesis p 38.6 1E+02 0.0036 32.8 9.6 41 1070-1115 166-206 (264)
330 3ied_A Heat shock protein; HSP 38.4 13 0.00044 39.8 2.2 52 568-623 131-197 (272)
331 1jcn_A Inosine monophosphate d 37.9 2.3E+02 0.0077 33.3 13.3 88 1008-1114 281-385 (514)
332 3bul_A Methionine synthase; tr 37.9 1.6E+02 0.0056 35.2 11.9 101 998-1115 98-210 (579)
333 3bo9_A Putative nitroalkan dio 37.5 1.8E+02 0.0062 32.0 11.7 81 1016-1115 118-204 (326)
334 4adt_A Pyridoxine biosynthetic 37.1 96 0.0033 33.9 9.0 40 1071-1115 196-237 (297)
335 3nav_A Tryptophan synthase alp 37.0 29 0.00098 37.6 4.8 50 1069-1122 83-138 (271)
336 3o07_A Pyridoxine biosynthesis 35.8 66 0.0023 34.7 7.1 40 1071-1115 187-228 (291)
337 4fxs_A Inosine-5'-monophosphat 35.7 4.1E+02 0.014 31.0 14.9 101 998-1115 243-362 (496)
338 2tps_A Protein (thiamin phosph 35.1 1.2E+02 0.004 31.1 9.2 69 1028-1115 123-199 (227)
339 3kts_A Glycerol uptake operon 35.1 64 0.0022 32.9 6.7 52 1055-1115 127-178 (192)
340 4e38_A Keto-hydroxyglutarate-a 34.5 78 0.0027 33.3 7.5 96 1015-1128 28-124 (232)
341 2lci_A Protein OR36; structura 33.8 1E+02 0.0034 27.2 6.7 40 1001-1040 80-119 (134)
342 2vws_A YFAU, 2-keto-3-deoxy su 33.8 4.3E+02 0.015 27.9 13.6 72 1055-1129 39-111 (267)
343 2v5j_A 2,4-dihydroxyhept-2-ENE 33.8 4E+02 0.014 28.6 13.4 99 1014-1129 30-132 (287)
344 2vyc_A Biodegradative arginine 33.7 41 0.0014 41.9 6.1 38 704-741 2-47 (755)
345 3qz6_A HPCH/HPAI aldolase; str 33.4 2.1E+02 0.0073 30.4 11.0 84 1030-1129 25-109 (261)
346 1x1o_A Nicotinate-nucleotide p 33.4 1.6E+02 0.0054 32.0 10.0 90 1001-1113 169-265 (286)
347 3bw2_A 2-nitropropane dioxygen 33.0 2.9E+02 0.0099 30.8 12.7 77 1019-1114 142-235 (369)
348 2z6i_A Trans-2-enoyl-ACP reduc 32.4 2.6E+02 0.0089 30.7 12.0 77 1019-1114 107-189 (332)
349 1ka9_F Imidazole glycerol phos 32.0 1.8E+02 0.006 30.3 10.1 53 1058-1115 48-103 (252)
350 1yxy_A Putative N-acetylmannos 31.8 1.9E+02 0.0065 29.8 10.2 73 1022-1115 133-214 (234)
351 1h5y_A HISF; histidine biosynt 31.5 2.1E+02 0.0072 29.4 10.6 55 1070-1129 186-246 (253)
352 1qo2_A Molecule: N-((5-phospho 30.9 1.7E+02 0.0058 30.3 9.7 52 1071-1127 177-240 (241)
353 3fwz_A Inner membrane protein 30.6 2.4E+02 0.008 26.4 9.8 94 998-1115 30-124 (140)
354 1thf_D HISF protein; thermophI 30.6 2E+02 0.0069 29.9 10.2 54 1071-1129 184-243 (253)
355 1p0k_A Isopentenyl-diphosphate 29.3 4.2E+02 0.014 29.1 13.1 45 1067-1115 235-279 (349)
356 2px0_A Flagellar biosynthesis 28.8 96 0.0033 33.7 7.4 94 997-1104 133-231 (296)
357 1gox_A (S)-2-hydroxy-acid oxid 28.5 2.9E+02 0.0098 31.0 11.5 87 1012-1115 215-308 (370)
358 3ceu_A Thiamine phosphate pyro 28.3 73 0.0025 32.6 6.0 70 1025-1113 92-169 (210)
359 1izc_A Macrophomate synthase i 28.1 2.8E+02 0.0097 30.7 11.1 75 1055-1129 63-138 (339)
360 2oo3_A Protein involved in cat 27.8 1.2E+02 0.004 33.0 7.6 72 998-1080 113-185 (283)
361 3l0g_A Nicotinate-nucleotide p 27.7 98 0.0034 33.8 7.0 53 1072-1130 196-248 (300)
362 4fxs_A Inosine-5'-monophosphat 27.4 1.3E+02 0.0046 35.2 8.8 56 1055-1115 243-299 (496)
363 3r8r_A Transaldolase; pentose 27.2 1.4E+02 0.0047 31.0 7.7 86 1014-1118 94-187 (212)
364 3sgz_A Hydroxyacid oxidase 2; 26.8 3.5E+02 0.012 30.1 11.6 88 1011-1115 206-300 (352)
365 3ovp_A Ribulose-phosphate 3-ep 26.5 69 0.0024 33.5 5.5 85 1015-1115 105-196 (228)
366 4dzz_A Plasmid partitioning pr 26.5 1.3E+02 0.0044 29.9 7.5 54 997-1064 29-84 (206)
367 3sr7_A Isopentenyl-diphosphate 26.3 3.3E+02 0.011 30.4 11.4 42 1070-1115 265-306 (365)
368 3kcp_B Cellulosome anchoring p 26.0 32 0.0011 34.0 2.5 29 128-156 61-90 (187)
369 2fli_A Ribulose-phosphate 3-ep 25.5 82 0.0028 32.2 5.8 73 1055-1128 131-215 (220)
370 3paj_A Nicotinate-nucleotide p 24.7 1.1E+02 0.0039 33.6 6.9 42 1087-1130 231-272 (320)
371 3tqv_A Nicotinate-nucleotide p 24.3 1.2E+02 0.0043 32.8 7.0 53 1072-1130 187-239 (287)
372 2bm3_A Type 2 cohesin, scaffol 23.8 39 0.0013 33.0 2.5 29 128-156 49-78 (166)
373 3inp_A D-ribulose-phosphate 3- 23.4 65 0.0022 34.2 4.5 88 1016-1115 128-222 (246)
374 3ajx_A 3-hexulose-6-phosphate 23.2 53 0.0018 33.4 3.7 54 1061-1118 29-86 (207)
375 3s1x_A Probable transaldolase; 23.0 1.5E+02 0.005 31.0 7.0 85 1014-1117 96-188 (223)
376 1rd5_A Tryptophan synthase alp 22.8 1.2E+02 0.004 32.2 6.6 81 1032-1130 35-139 (262)
377 1ep3_A Dihydroorotate dehydrog 22.7 2.2E+02 0.0074 30.7 8.9 53 1071-1128 230-288 (311)
378 3ctl_A D-allulose-6-phosphate 22.5 69 0.0024 33.6 4.5 92 1013-1116 97-195 (231)
379 3l0g_A Nicotinate-nucleotide p 22.5 1.1E+02 0.0038 33.4 6.1 67 1025-1114 211-277 (300)
380 1ls1_A Signal recognition part 22.5 2.5E+02 0.0085 30.3 9.2 54 998-1064 126-189 (295)
381 1tqj_A Ribulose-phosphate 3-ep 22.2 1.3E+02 0.0046 31.2 6.7 86 1015-1115 105-200 (230)
382 3r2g_A Inosine 5'-monophosphat 22.0 1.8E+02 0.0062 32.6 8.1 56 1055-1115 112-168 (361)
383 2w6r_A Imidazole glycerol phos 21.8 1.2E+02 0.0041 32.0 6.4 40 1071-1115 63-102 (266)
384 1wa3_A 2-keto-3-deoxy-6-phosph 21.8 1.4E+02 0.0046 30.2 6.6 81 1014-1115 96-177 (205)
385 4gud_A Imidazole glycerol phos 21.7 1.9E+02 0.0065 29.2 7.7 35 999-1033 3-37 (211)
386 1h1y_A D-ribulose-5-phosphate 21.2 2.4E+02 0.0082 29.0 8.5 55 1056-1115 139-200 (228)
387 1thf_D HISF protein; thermophI 20.9 3.8E+02 0.013 27.6 10.1 40 1071-1115 63-102 (253)
388 3dm5_A SRP54, signal recogniti 20.6 2E+02 0.0069 33.2 8.3 107 997-1116 127-248 (443)
389 1ypf_A GMP reductase; GUAC, pu 20.6 8.4E+02 0.029 26.5 14.3 89 1006-1114 132-237 (336)
390 1h5y_A HISF; histidine biosynt 20.5 3.4E+02 0.012 27.7 9.7 41 1070-1115 65-105 (253)
391 3s83_A Ggdef family protein; s 20.4 2.9E+02 0.0098 28.8 9.1 100 1014-1129 144-254 (259)
392 3lab_A Putative KDPG (2-keto-3 20.3 2.4E+02 0.0082 29.2 7.9 65 1056-1128 39-103 (217)
393 1jvn_A Glutamine, bifunctional 20.0 4.9E+02 0.017 30.8 11.8 54 1071-1129 485-545 (555)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=8.7e-37 Score=336.75 Aligned_cols=225 Identities=30% Similarity=0.418 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccee
Q 042553 364 ERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG--PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE 441 (1131)
Q Consensus 364 e~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~--~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~ 441 (1131)
++....|.+|++++||||||||++|.|+++++..... ..++.+++++.|..++.+|..+++++|++++++.+...+..
T Consensus 14 ~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~ 93 (258)
T 2c2a_A 14 KRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINR 93 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCcc
Confidence 4445567789999999999999999999998765321 23456788999999999999999999999999999999999
Q ss_pred eeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC----eEEEEEeec
Q 042553 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG----HISVRACVK 517 (1131)
Q Consensus 442 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G----~I~v~~~~~ 517 (1131)
+++++.+++++++..+...+..+++.+.++..... ...+.+|+.+|.|||.|||+||+||++.| .|.+.+...
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 170 (258)
T 2c2a_A 94 EKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPC---PVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 170 (258)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCS---CCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred ceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCC---CceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC
Confidence 99999999999999999999999999987654222 13578999999999999999999999754 355554321
Q ss_pred CCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC-
Q 042553 518 KPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG- 596 (1131)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~- 596 (1131)
...+.|+|.|+|+||+++.+++||+|||+.+..
T Consensus 171 ----------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~ 204 (258)
T 2c2a_A 171 ----------------------------------------------DGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSL 204 (258)
T ss_dssp ----------------------------------------------TTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---
T ss_pred ----------------------------------------------CCeEEEEEEecCCCCCHHHHHhhccccccCCCCC
Confidence 125789999999999999999999999997653
Q ss_pred ---CCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 597 ---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 597 ---~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
.+|+||||+|||++|+.|||+|++.|.+ +.||+|+|.+|..
T Consensus 205 ~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~--~~Gt~f~i~lP~~ 248 (258)
T 2c2a_A 205 TYEVPGTGLGLAITKEIVELHGGRIWVESEV--GKGSRFFVWIPKD 248 (258)
T ss_dssp ------CCCTHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEECC
T ss_pred CCCCCCcchHHHHHHHHHHHcCCEEEEEecC--CCCcEEEEEeeCC
Confidence 3599999999999999999999999876 3699999999864
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=1.8e-32 Score=303.35 Aligned_cols=223 Identities=27% Similarity=0.424 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeee
Q 042553 364 ERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEED 443 (1131)
Q Consensus 364 e~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~ 443 (1131)
++....+.+|++.++|||||||++|.++++++.......++.++++..+..++++|..++++++++++++.+...+..++
T Consensus 34 ~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 113 (268)
T 4ew8_A 34 AEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIED 113 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeee
Confidence 33445567899999999999999999999998765555677888999999999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCCC
Q 042553 444 FDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAI 522 (1131)
Q Consensus 444 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~ 522 (1131)
+++.+++++++..+...+..+++.+.++.+... ..+.+|+..|.|||.|||.||+||++. |.|.|.+...
T Consensus 114 ~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~----~~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~----- 184 (268)
T 4ew8_A 114 IRVSDLLLNAQERALKDAQLGGVTLAVECEEDV----GLIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA----- 184 (268)
T ss_dssp EEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTS----CEEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC-----
T ss_pred ccHHHHHHHHHHHHHhhhhccCceEEEEcCCCC----ceEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec-----
Confidence 999999999999999999999999999876543 358899999999999999999999986 6787776432
Q ss_pred CCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCccc
Q 042553 523 GNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGL 602 (1131)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGL 602 (1131)
...+.|.|.|+|+||+++.++++|++|++.+. +|+||
T Consensus 185 -----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~--~g~Gl 221 (268)
T 4ew8_A 185 -----------------------------------------LGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR--GGPGL 221 (268)
T ss_dssp -----------------------------------------SSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS--CCCTT
T ss_pred -----------------------------------------CCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC--CCCcc
Confidence 12588999999999999999999999997554 69999
Q ss_pred chHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 603 GLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 603 GLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
||+|||++++.|||+|++.+.+ +.||+|+|.+|+..
T Consensus 222 GL~i~~~~~~~~gG~i~i~s~~--~~Gt~~~i~lP~~~ 257 (268)
T 4ew8_A 222 GLALVKALVELHGGWVALESEP--GNGSTFTCHLPETQ 257 (268)
T ss_dssp HHHHHHHHHHHTTCEEEEEECT--TSCEEEEEEEECCC
T ss_pred cHHHHHHHHHHcCCEEEEEecC--CCCEEEEEEecCCC
Confidence 9999999999999999998865 46999999998764
No 3
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=3.7e-34 Score=307.08 Aligned_cols=215 Identities=22% Similarity=0.320 Sum_probs=131.9
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGEL 449 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~l 449 (1131)
+.+|++++||||||||++|.++++++.......++..+++..+..+++++..++++++++++++.+......+++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 45789999999999999999999987654433344566777788899999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC-eEEEEEeecCCCCCCCCCCC
Q 042553 450 LEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG-HISVRACVKKPSAIGNPSLS 528 (1131)
Q Consensus 450 l~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~~~ 528 (1131)
+++++..+...+..+++.+.++.+... ..+.+|+.+|.|||.|||+||+||++.| .|.|.+..
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~~------------ 145 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHS----IKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNA------------ 145 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCS----CEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEECS------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcc----eEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcc------------
Confidence 999999999999999999998876543 3578999999999999999999999765 46654421
Q ss_pred CCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC-CCCCcccchHHH
Q 042553 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE-GEGGTGLGLGIV 607 (1131)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~-~~~GtGLGLsIv 607 (1131)
. .|.|.|+|+||+++.++++|++|++.+. ..+|+||||+||
T Consensus 146 ----------------------------------~----~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~ 187 (222)
T 3jz3_A 146 ----------------------------------D----NFIVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLSIV 187 (222)
T ss_dssp ----------------------------------S----EEEEECSCC--------------------------CTHHHH
T ss_pred ----------------------------------C----eEEEEECCCCCCHHHHHHHHhhhccCCCCCCCcccccHHHH
Confidence 0 1889999999999999999999998654 346999999999
Q ss_pred HHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 608 QSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 608 k~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
|++++.|||+|++.|.+ +.||+|+|++|.+.
T Consensus 188 ~~i~~~~gG~i~i~s~~--~~Gt~v~~~~P~~~ 218 (222)
T 3jz3_A 188 QRIAKLHGMNVEFGNAE--QGGFEAKVSWLEHH 218 (222)
T ss_dssp HHHHHHTTCEEECCBCT--TSSBEEEEECCCC-
T ss_pred HHHHHHcCCEEEEEcCC--CCcEEEEEeecCCC
Confidence 99999999999998875 36999999998753
No 4
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=1.4e-32 Score=322.66 Aligned_cols=216 Identities=19% Similarity=0.208 Sum_probs=171.9
Q ss_pred HHHHHHchHhhHH-----HHHHHHHHHHHHHhhCCC---ChHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhc-CCCcc
Q 042553 371 SLAFANASHDIRA-----ALAGITGLIELCYVEAGP---GSELETNLR--QMNVCANDLLGLLNSILDTSKVEA-GKMQL 439 (1131)
Q Consensus 371 s~flA~iSHELRT-----PLt~I~g~~ell~~~~~~---~~~~~~~l~--~i~~~~~~Ll~LIndlLdlskie~-g~~~l 439 (1131)
..||++++||||| ||+.|.|+++++...... .++.+++++ .+.+.+.+| ||+++|++++.++ +...+
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~ 173 (394)
T 2btz_A 96 LSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPK 173 (394)
T ss_dssp THHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------C
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCc
Confidence 3588999999999 999999999987643222 123445677 377888888 9999999999988 67777
Q ss_pred ee----eeecHHHHHHHHHHHHHHHHHc-----CCcEEEEcc---CCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC
Q 042553 440 IE----EDFDVGELLEDVVDLFHPVAMR-----KGVEVVLDP---SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE 507 (1131)
Q Consensus 440 ~~----~~~dL~~ll~~v~~~~~~~a~~-----k~i~l~~~~---~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~ 507 (1131)
.. +++++.++++++++.+...+.+ +++.+.+.. +.. ...+.+|+.+|+|||.|||+||+|||++
T Consensus 174 ~~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~----~~~v~~d~~~L~~il~NLl~NAik~~~~ 249 (394)
T 2btz_A 174 HIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQ----PIHMVYVPSHLYHMLFELFKNAMRATVE 249 (394)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS----CCEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCC----CeEEEecHHHHHHHHHHHHHHHHHHhhh
Confidence 77 8999999999999999999987 999998732 222 1458899999999999999999999987
Q ss_pred Ce--------EEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCC
Q 042553 508 GH--------ISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIP 579 (1131)
Q Consensus 508 G~--------I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~ 579 (1131)
|+ |.|.+... ...+.|+|.|+|+||+
T Consensus 250 ~~~~~~~~~~I~I~~~~~----------------------------------------------~~~v~i~V~D~G~GI~ 283 (394)
T 2btz_A 250 SHESSLILPPIKVMVALG----------------------------------------------EEDLSIKMSDRGGGVP 283 (394)
T ss_dssp TTTTCSCCCCEEEEEEEC----------------------------------------------SSEEEEEEEECSCCCC
T ss_pred ccccCCCCCCEEEEEEeC----------------------------------------------CCEEEEEEEeCCCCCC
Confidence 64 87776421 1258999999999999
Q ss_pred cchHhhhccCCeecCCC---------CCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 580 KEKRKTVFENYVQVKEG---------EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 580 ~e~~~~IFe~F~q~~~~---------~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
++.+++||++||+.+.. .+|+||||+|||.+++.|||+|++.|.+ |.||+|+|.+|...
T Consensus 284 ~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~--g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 284 LRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSME--GFGTDAVIYLKALS 351 (394)
T ss_dssp HHHHHHHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEESST
T ss_pred HHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecC--CCceEEEEEecCCC
Confidence 99999999999998764 3699999999999999999999999876 36999999998753
No 5
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=3.2e-32 Score=319.66 Aligned_cols=216 Identities=19% Similarity=0.188 Sum_probs=181.4
Q ss_pred HHHHHHHchHhhHH-----HHHHHHHHHHHHHhhC---CCChHHHHHHH--HHHHHHHHHHHHHHHHHH-HHhhhcCCCc
Q 042553 370 KSLAFANASHDIRA-----ALAGITGLIELCYVEA---GPGSELETNLR--QMNVCANDLLGLLNSILD-TSKVEAGKMQ 438 (1131)
Q Consensus 370 ks~flA~iSHELRT-----PLt~I~g~~ell~~~~---~~~~~~~~~l~--~i~~~~~~Ll~LIndlLd-lskie~g~~~ 438 (1131)
+..||++++||||| ||+.|.|+++++.... ...++.+++++ .|.+.+.+| +|+++|+ +++. ++...
T Consensus 95 ~~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~ 171 (394)
T 2e0a_A 95 ALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNP 171 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCT
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCC
Confidence 34578999999999 9999999999764321 13456678888 688899999 9999999 7777 77777
Q ss_pred cee----eeecHHHHHHHHHHHHHHHHHcC-----CcEEEEcc---CCCCccccceEEeCHHHHHHHHHHHHHHHhhccC
Q 042553 439 LIE----EDFDVGELLEDVVDLFHPVAMRK-----GVEVVLDP---SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS 506 (1131)
Q Consensus 439 l~~----~~~dL~~ll~~v~~~~~~~a~~k-----~i~l~~~~---~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~ 506 (1131)
+.. +++++.++++++++.+...+.++ ++++.++. +.. ...+.+|+.+|+|||.|||+||+||++
T Consensus 172 ~~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~----~~~v~~d~~~L~~il~NLl~NAik~~~ 247 (394)
T 2e0a_A 172 SHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQ----PIHIVYVPSHLHHMLFELFKNAMRATV 247 (394)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS----CCEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCC----CeEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 777 89999999999999999999999 99998842 222 145889999999999999999999998
Q ss_pred CCe--------EEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCC
Q 042553 507 EGH--------ISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578 (1131)
Q Consensus 507 ~G~--------I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI 578 (1131)
+|+ |.|.+... ...+.|+|.|+|+||
T Consensus 248 ~~~~~~~~~~~I~I~~~~~----------------------------------------------~~~v~i~V~D~G~GI 281 (394)
T 2e0a_A 248 EHQENQPSLTPIEVIVVLG----------------------------------------------KEDLTIKISDRGGGV 281 (394)
T ss_dssp HHTTTSSSCCCEEEEEEEC----------------------------------------------SSEEEEEEEECSCCC
T ss_pred hcccccCCCCCEEEEEEeC----------------------------------------------CCEEEEEEEeCCCCc
Confidence 754 88776421 126899999999999
Q ss_pred CcchHhhhccCCeecCCC----------CCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 579 PKEKRKTVFENYVQVKEG----------EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 579 ~~e~~~~IFe~F~q~~~~----------~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
+++.+++||++||+.+.. .+|+||||+|||.+++.|||+|++.|.+ |.||+|+|.+|...
T Consensus 282 ~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~--g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 282 PLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS--GYGTDAIIYLKALS 351 (394)
T ss_dssp CGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEESSG
T ss_pred CHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC--CccEEEEEEeCCCC
Confidence 999999999999998754 3699999999999999999999999876 46999999998764
No 6
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=6.7e-32 Score=316.29 Aligned_cols=218 Identities=17% Similarity=0.200 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHchHhhHHHHHHHH-HHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeee
Q 042553 366 KSMNKSLAFANASHDIRAALAGIT-GLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDF 444 (1131)
Q Consensus 366 ~~~~ks~flA~iSHELRTPLt~I~-g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~ 444 (1131)
.+..+..|+++++||+||||++|. |+.+++. .....++.+++++.|..++.+|..|++++|++++++.+.+.+..+++
T Consensus 117 ~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~-~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 117 DEAQYCQLVRQLLDDHKDVVTLLAEGLRESRK-HIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSS-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 345677899999999999999999 7766543 33334678899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHcC-----CcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC---------eE
Q 042553 445 DVGELLEDVVDLFHPVAMRK-----GVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG---------HI 510 (1131)
Q Consensus 445 dL~~ll~~v~~~~~~~a~~k-----~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G---------~I 510 (1131)
++.++++++++.+...+..+ ++.+..+.+ ..+.+|+.+|.|||.|||+||+|||.+| .|
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~-------~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I 268 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA-------ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDV 268 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT-------CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCC-------CceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCE
Confidence 99999999999999999988 666665433 2367899999999999999999999875 57
Q ss_pred EEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCC
Q 042553 511 SVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENY 590 (1131)
Q Consensus 511 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F 590 (1131)
.|.+... ...+.|+|.|+|+||+++.+++||++|
T Consensus 269 ~I~~~~~----------------------------------------------~~~v~i~V~D~G~GI~~~~~~~iF~~f 302 (388)
T 1gkz_A 269 VITIANN----------------------------------------------DVDLIIRISDRGGGIAHKDLDRVMDYH 302 (388)
T ss_dssp EEEEEEC----------------------------------------------SSEEEEEEECCSCCCCTTTTTTTTSTT
T ss_pred EEEEEeC----------------------------------------------CCEEEEEEEEeCCCcCHHHHHHhcCcc
Confidence 7766421 126899999999999999999999999
Q ss_pred eecCCCC------------------------CCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 591 VQVKEGE------------------------GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 591 ~q~~~~~------------------------~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
|+.+... +|+||||+|||.+++.|||+|++.|.+ |.||+|+|.+|..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~--g~Gt~f~i~LP~~ 373 (388)
T 1gkz_A 303 FTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ--GIGTDVYLRLRHI 373 (388)
T ss_dssp CCCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEECS
T ss_pred cccCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC--CCcEEEEEEecCC
Confidence 9987632 699999999999999999999999876 4699999999875
No 7
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.98 E-value=7.4e-32 Score=317.89 Aligned_cols=215 Identities=20% Similarity=0.187 Sum_probs=175.6
Q ss_pred HHHHHchHhhHH-----HHHHHHHHHHHHHhhCC---CChHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc----C--
Q 042553 372 LAFANASHDIRA-----ALAGITGLIELCYVEAG---PGSELETNLRQ--MNVCANDLLGLLNSILDTSKVEA----G-- 435 (1131)
Q Consensus 372 ~flA~iSHELRT-----PLt~I~g~~ell~~~~~---~~~~~~~~l~~--i~~~~~~Ll~LIndlLdlskie~----g-- 435 (1131)
.+|++++||||| ||+.|.|+++++..... ..++.+++++. +.+.+.+| ||+++|++++.|+ +
T Consensus 107 ~~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~ 184 (407)
T 2q8g_A 107 YDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHR 184 (407)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCc
Confidence 456667799999 99999999997653211 12345667777 67778888 9999999999986 3
Q ss_pred -CCcceeeeecHHHHHHHHHHHHHHHHHcC-----CcEEEEcc---CCCCccccceEEeCHHHHHHHHHHHHHHHhhccC
Q 042553 436 -KMQLIEEDFDVGELLEDVVDLFHPVAMRK-----GVEVVLDP---SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS 506 (1131)
Q Consensus 436 -~~~l~~~~~dL~~ll~~v~~~~~~~a~~k-----~i~l~~~~---~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~ 506 (1131)
.+.+..+++++.++++++++.+...+.++ ++.+.++. ++. ...+.+|+.+|+|||.|||+||+|||+
T Consensus 185 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~----~~~v~~d~~~L~~il~NLl~NAik~t~ 260 (407)
T 2q8g_A 185 KHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQ----PIQVVYVPSHLYHMVFELFKNAMRATM 260 (407)
T ss_dssp CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS----CCEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCC----CeEEEEcHHHHHHHHHHHHHHHHHHHh
Confidence 66788899999999999999999999988 99998854 121 135889999999999999999999998
Q ss_pred CC--------eEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCC
Q 042553 507 EG--------HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGI 578 (1131)
Q Consensus 507 ~G--------~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI 578 (1131)
+| .|.|.+... ...+.|+|.|+|+||
T Consensus 261 ~~~~~~~~~~~I~I~~~~~----------------------------------------------~~~v~i~V~D~G~GI 294 (407)
T 2q8g_A 261 EHHANRGVYPPIQVHVTLG----------------------------------------------NEDLTVKMSDRGGGV 294 (407)
T ss_dssp HHSTTTCCCCCEEEEEEEC----------------------------------------------SSEEEEEEEECSCCC
T ss_pred hccccCCCCCCEEEEEEeC----------------------------------------------CCEEEEEEEecCCCC
Confidence 65 477766421 125889999999999
Q ss_pred CcchHhhhccCCeecCCCC----------CCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 579 PKEKRKTVFENYVQVKEGE----------GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 579 ~~e~~~~IFe~F~q~~~~~----------~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
+++.+++||++||+.+... +|+||||+|||.+++.|||+|++.|.+ |.||+|+|.+|...
T Consensus 295 ~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~--g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 295 PLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLE--GYGTDAVIYIKALS 364 (407)
T ss_dssp CHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEESSG
T ss_pred CHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC--CCceEEEEEECCCC
Confidence 9999999999999987642 699999999999999999999999876 36999999998764
No 8
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.98 E-value=2.6e-31 Score=314.23 Aligned_cols=213 Identities=18% Similarity=0.168 Sum_probs=166.7
Q ss_pred HHHchHhhHHHHH-----HHHHHHHHHHhhCC---CChHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh-hcCCCcc---
Q 042553 374 FANASHDIRAALA-----GITGLIELCYVEAG---PGSELETNLRQMNVC--ANDLLGLLNSILDTSKV-EAGKMQL--- 439 (1131)
Q Consensus 374 lA~iSHELRTPLt-----~I~g~~ell~~~~~---~~~~~~~~l~~i~~~--~~~Ll~LIndlLdlski-e~g~~~l--- 439 (1131)
|++++|||||||+ .|.|+++++..... ..++.+++++.+..+ +.+| +|+++|.+.+. +.+....
T Consensus 121 f~~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~~~~ 198 (419)
T 1y8o_A 121 FLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPKHIG 198 (419)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTTSBT
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCCCccc
Confidence 5678899999999 88999997654311 124566777776655 7777 99999766654 3344333
Q ss_pred -eeeeecHHHHHHHHHHHHHHHHHc-----CCcEEEEcc---CCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC--
Q 042553 440 -IEEDFDVGELLEDVVDLFHPVAMR-----KGVEVVLDP---SDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG-- 508 (1131)
Q Consensus 440 -~~~~~dL~~ll~~v~~~~~~~a~~-----k~i~l~~~~---~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-- 508 (1131)
..+++|+.++++++++.++..+.+ +++.+.+.. ++. ...|.+|+.+|+|||.|||+||+|||++|
T Consensus 199 ~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~----~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 199 SIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDK----PIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS----CCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCC----CeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 348999999999999999999987 888888732 121 24588999999999999999999999865
Q ss_pred -------eEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcc
Q 042553 509 -------HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKE 581 (1131)
Q Consensus 509 -------~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e 581 (1131)
.|.|.+... ...+.|+|.|+|+|||++
T Consensus 275 ~~~~~~~~I~I~~~~~----------------------------------------------~~~v~I~V~D~G~GI~~e 308 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLG----------------------------------------------KEDLSIKISDLGGGVPLR 308 (419)
T ss_dssp TCSSCCCCEEEEEEEC----------------------------------------------SSEEEEEEEECSCCCCHH
T ss_pred ccCCCCCCEEEEEEeC----------------------------------------------CCEEEEEEEECCCCCCHH
Confidence 477766321 125899999999999999
Q ss_pred hHhhhccCCeecCCC----------CCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 582 KRKTVFENYVQVKEG----------EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 582 ~~~~IFe~F~q~~~~----------~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
.+++||+|||+.+.. .+|+||||+|||++|+.|||+|++.|.+ |.||+|+|.+|...
T Consensus 309 ~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~--g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 309 KIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME--GVGTDAVIYLKALS 375 (419)
T ss_dssp HHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEESCG
T ss_pred HHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC--CCCEEEEEEecCCC
Confidence 999999999998764 4699999999999999999999999876 36999999998764
No 9
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.97 E-value=5.1e-31 Score=286.84 Aligned_cols=213 Identities=25% Similarity=0.348 Sum_probs=182.2
Q ss_pred HHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHH
Q 042553 369 NKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGE 448 (1131)
Q Consensus 369 ~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ 448 (1131)
.+.+|++.++|||||||++|.++++++.......++..++++.+...+.++..++++++++++.+.+ ..+++++..
T Consensus 13 ~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~~ 88 (244)
T 3d36_A 13 AVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVKL 88 (244)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHHH
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhHHH
Confidence 4567899999999999999999999876655445667788999999999999999999999998765 457899999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCCCCCCCC
Q 042553 449 LLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSAIGNPSL 527 (1131)
Q Consensus 449 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~~~~~~~ 527 (1131)
++++++..+...+..+++.+.++.++ ..+.+|+..|.|||.|||.||+||++. |.|.|.+...
T Consensus 89 ~l~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~---------- 152 (244)
T 3d36_A 89 EIERVIDILRPLANMSCVDIQATLAP------FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSID---------- 152 (244)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEECCC------CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEE----------
T ss_pred HHHHHHHHHHHHHHhcCeEEeccCCC------ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEe----------
Confidence 99999999999999999999887653 347899999999999999999999964 5677766432
Q ss_pred CCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHH
Q 042553 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIV 607 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIv 607 (1131)
...+.|+|.|+|+||+++.++++|+||++.+. .+|+||||+||
T Consensus 153 ------------------------------------~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~-~~g~GlGL~i~ 195 (244)
T 3d36_A 153 ------------------------------------NGRVLIRIADTGVGMTKEQLERLGEPYFTTKG-VKGTGLGMMVV 195 (244)
T ss_dssp ------------------------------------TTEEEEEEEECSSCCCHHHHHHTTSTTCCSSG-GGCCSCHHHHH
T ss_pred ------------------------------------CCEEEEEEEecCCCCCHHHHHHHhcccccCCC-CCCcchhHHHH
Confidence 12578999999999999999999999998653 36899999999
Q ss_pred HHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 608 QSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 608 k~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
|++++.|||+|++.+.++ .|++|+|.+|+..
T Consensus 196 ~~i~~~~gG~i~~~~~~~--~G~~~~i~lP~~~ 226 (244)
T 3d36_A 196 YRIIESMNGTIRIESEIH--KGTTVSIYLPLAS 226 (244)
T ss_dssp HHHHHHTTCEEEEEEETT--TEEEEEEEEECCC
T ss_pred HHHHHHcCCEEEEEecCC--CcEEEEEEecCCC
Confidence 999999999999988753 6999999999864
No 10
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=3.6e-31 Score=303.83 Aligned_cols=213 Identities=25% Similarity=0.403 Sum_probs=178.0
Q ss_pred HHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHH
Q 042553 369 NKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGE 448 (1131)
Q Consensus 369 ~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ 448 (1131)
.+.+|++.++|||||||++|.++++++.......++..++++.+..++.+|..++++++++++. ...+..+++++.+
T Consensus 131 ~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~~ 207 (349)
T 3a0r_A 131 ILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLNE 207 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHHH
Confidence 4668999999999999999999999886554444456778999999999999999999999994 3356778999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccC-CCeEEEEEeecCCCCCCCCCC
Q 042553 449 LLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS-EGHISVRACVKKPSAIGNPSL 527 (1131)
Q Consensus 449 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~-~G~I~v~~~~~~~~~~~~~~~ 527 (1131)
++++++..+...+..+++.+.++.+... ..+.+|+.+|.|||.|||+||+||++ .|.|.|.+...
T Consensus 208 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~---------- 273 (349)
T 3a0r_A 208 LIREVYVLFEEKIRKMNIDFCFETDNED----LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM---------- 273 (349)
T ss_dssp HHHHHHHHHHHHHTTTTCCCEEEESCSC----CEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEE----------
T ss_pred HHHHHHHHHHHHHHHcCcEEEEecCCCC----ceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEec----------
Confidence 9999999999999999999888765432 35889999999999999999999995 57788776432
Q ss_pred CCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHH
Q 042553 528 SSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIV 607 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIv 607 (1131)
...+.|+|.|+|+|||++.+++||+||++.+. +|+||||+||
T Consensus 274 ------------------------------------~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~--~g~GlGL~i~ 315 (349)
T 3a0r_A 274 ------------------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT--QGTGLGLSIC 315 (349)
T ss_dssp ------------------------------------TTEEEEEEEEESCCCCGGGGTTTSSSCCCC--------CCCTHH
T ss_pred ------------------------------------CCEEEEEEEECCCCCChHHHhhcCCCCccCCC--CCccchHHHH
Confidence 12588999999999999999999999998753 6999999999
Q ss_pred HHHHH-HhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 608 QSLVR-LMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 608 k~Lv~-~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
|++++ .|||.|++++.+ .||+|+|.+|+.
T Consensus 316 ~~~v~~~~gg~i~~~~~~---~Gt~f~i~lP~~ 345 (349)
T 3a0r_A 316 RKIIEDEHGGKIWTENRE---NGVVFIFEIPKT 345 (349)
T ss_dssp HHHHHHTTCSBCCEEECS---SEEEEEEEEESC
T ss_pred HHHHHHhCCCEEEEEeCC---CcEEEEEEecCC
Confidence 99999 899999998752 499999999875
No 11
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=1.5e-29 Score=277.96 Aligned_cols=196 Identities=18% Similarity=0.169 Sum_probs=149.8
Q ss_pred HHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHH
Q 042553 372 LAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLE 451 (1131)
Q Consensus 372 ~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~ 451 (1131)
.+.|+|||||||||++|.|++|++.... .++..+++++.|.++++++. +++++.|+..+.. ...+++++.++.+
T Consensus 48 llas~IaHELrtPL~~I~~~~elL~~~~-~~~~~~~~l~~I~~~~~~~~----~ll~~~r~~~~~~-~~~~~~~~~~l~~ 121 (247)
T 4fpp_A 48 MLAARLCHDFISPASAIVSGLDLLEDPS-AQDMRDDAMNLIASSARKLA----DLLQFTRVAFGAS-ASAENFDSRELEK 121 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTT-CGGGHHHHHHHHHHHHHHHH----HHHHHHHHHTTCC-SSCCCEEHHHHHH
T ss_pred HHHhccCHHHhHHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHHHHH----HHHHHHHHhhccc-cccccccHHHHHH
Confidence 3457899999999999999999976543 33556677888888877655 4556667655442 3456788776543
Q ss_pred HHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCC-eEEEEEeecCCCCCCCCCCCCC
Q 042553 452 DVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEG-HISVRACVKKPSAIGNPSLSSS 530 (1131)
Q Consensus 452 ~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~~~~~~~~~~~~~~~~~~ 530 (1131)
.+...+..+++++.++.+... ++..+.|++.||+.||+||++.| .|.|++...
T Consensus 122 ----~~~~~~~~~~i~l~~~~~~~~---------~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~------------- 175 (247)
T 4fpp_A 122 ----LAQGVFAHVRPTLDWQIEPQA---------MNKPSSRAVLNIAQIAASALPAGGVATVKGVAA------------- 175 (247)
T ss_dssp ----HHHHHHTTSSSEEEECCCSCE---------ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEE-------------
T ss_pred ----HHHHHHHhhhhhccccccchh---------hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEE-------------
Confidence 445566788999988765431 34578999999999999999875 677766432
Q ss_pred ccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCC--CCcchHhhhccCCeecCCCCCCcccchHHHH
Q 042553 531 RHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKG--IPKEKRKTVFENYVQVKEGEGGTGLGLGIVQ 608 (1131)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G--I~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk 608 (1131)
...+.|.|.|+|+| |+++..+++|++|++.+ .+|+||||+|||
T Consensus 176 ---------------------------------~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~--~~G~GLGLai~~ 220 (247)
T 4fpp_A 176 ---------------------------------DGRFSIIADAKGPRARLRPEVLAGLKGEPLAEG--LGGPWVQAAYLN 220 (247)
T ss_dssp ---------------------------------TTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSS--CHHHHHHHHHHH
T ss_pred ---------------------------------CCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC--CCCccHHHHHHH
Confidence 12567888888876 77888999999998654 369999999999
Q ss_pred HHHHHhCCEEEEEeecCCCccEEEEEEEe
Q 042553 609 SLVRLMGGDIEIVDKENGERGTCFRFNVF 637 (1131)
Q Consensus 609 ~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~ 637 (1131)
+||+.|||+|+++|.+ | |++|+|+||
T Consensus 221 ~iv~~hGG~i~v~s~~--~-G~~f~v~LP 246 (247)
T 4fpp_A 221 ALVRAAGGQIAVEIGE--D-RASIAAWVP 246 (247)
T ss_dssp HHHHHTTCEEEEEEET--T-EEEEEEEEE
T ss_pred HHHHHcCCEEEEEEcC--C-EEEEEEEec
Confidence 9999999999998763 3 999999987
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.93 E-value=2.2e-25 Score=259.82 Aligned_cols=199 Identities=19% Similarity=0.269 Sum_probs=155.6
Q ss_pred HHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHH
Q 042553 368 MNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVG 447 (1131)
Q Consensus 368 ~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~ 447 (1131)
..|..|+++++||||||++.|.++++.+. . +.+...+++|.+++++|++++. ..+.+++.
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~-----~-------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~ 67 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYN-----I-------KELDESLSHLSRITLDLQNVVM--------KIRMVPIS 67 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCC-----C-------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----H-------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHH
Confidence 45778999999999999999998765431 1 4577788899999999999873 23467788
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHH---HHHHHHHHHHHHHhhcc-------------CCCeEE
Q 042553 448 ELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRV---KLKQILSNLLSNAVKFT-------------SEGHIS 511 (1131)
Q Consensus 448 ~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~---rL~QIL~NLL~NAiKfT-------------~~G~I~ 511 (1131)
.+++.+...++..+.+++.++.++..... +..|+. ++.|+|.||+.||+||+ +.|.|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~------~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~ 141 (379)
T 1b3q_A 68 FVFNRFPRMVRDLAKKMNKEVNFIMRGED------TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLI 141 (379)
T ss_dssp HHHTTHHHHHHHHHHHTTCCEEEEEECTT------CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEcCCC------eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEE
Confidence 99999999999999887776666554322 345775 55566999999999996 457788
Q ss_pred EEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchH--------
Q 042553 512 VRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKR-------- 583 (1131)
Q Consensus 512 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~-------- 583 (1131)
|++... ...+.|+|.|+|+||+++.+
T Consensus 142 i~~~~~----------------------------------------------~~~v~i~V~D~G~Gi~~~~~~~~a~~~g 175 (379)
T 1b3q_A 142 LSARHE----------------------------------------------GNNVVIEVEDDGRGIDKEKIIRKAIEKG 175 (379)
T ss_dssp EEEEEE----------------------------------------------TTEEEEEEEECSCCCCHHHHHHHHHHSS
T ss_pred EEEEEe----------------------------------------------CCEEEEEEEECCCCCCHHHHHHHHHHcC
Confidence 876432 12689999999999999987
Q ss_pred ----------------hhhccCCeecCCC---CCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 584 ----------------KTVFENYVQVKEG---EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 584 ----------------~~IFe~F~q~~~~---~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
++||+|||+.... .+|+||||+|||++++.|||+|+++|.+ |+||+|++.+|+..
T Consensus 176 l~~~~~~~~~~~~~~~~~iF~p~fst~~~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~--g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 176 LIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSMGIESEK--DKGTKVTIRLPLTL 249 (379)
T ss_dssp SCCSTTTTTSCTHHHHSGGGSTTCC-----------CCCSHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEESSC
T ss_pred CCChhhhhcCCHHHHHHHhcCCCCccCCccCCCCCccccHHHHHHHHHHCCCEEEEEEcC--CCCeEEEeccCCcc
Confidence 8999999887543 3699999999999999999999999876 47999999999864
No 13
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.92 E-value=1.6e-24 Score=214.55 Aligned_cols=120 Identities=29% Similarity=0.554 Sum_probs=110.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
++.|||||||++.+|..++.+|+..||. |..|.||.+|++.+++. +||+||+|++||+|||+|+++
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~-------------~~DlillD~~MP~mdG~el~~ 77 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG-------------DFDFVVTDWNMPGMQGIDLLK 77 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH-------------CCSEEEEESCCSSSCHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC-------------CCCEEEEcCCCCCCCHHHHHH
Confidence 3568999999999999999999999986 77899999999999874 799999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhC
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH 1131 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1131 (1131)
+||+.+. .+++|||++|++...++..+|+++|+++||+|||+.++|.++|+++.
T Consensus 78 ~ir~~~~--~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 78 NIRADEE--LKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp HHHHSTT--TTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred HHHhCCC--CCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 9998643 45799999999999999999999999999999999999999998763
No 14
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.90 E-value=3.2e-23 Score=208.85 Aligned_cols=145 Identities=26% Similarity=0.384 Sum_probs=127.3
Q ss_pred eeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCC
Q 042553 442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521 (1131)
Q Consensus 442 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~ 521 (1131)
+++++.+++++++..+...+..+++++.++.++.. .+.+|+..|.|||.|||+||+||++. .|.|.+...
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~---- 71 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI-----SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQT---- 71 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC-----EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEEC----
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc-----eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEec----
Confidence 57999999999999999999999999999876542 37899999999999999999999987 666665321
Q ss_pred CCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcc
Q 042553 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTG 601 (1131)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtG 601 (1131)
...+.|+|.|+|+||+++.++++|++|++.+...+|+|
T Consensus 72 ------------------------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~~g~G 109 (152)
T 1id0_A 72 ------------------------------------------DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQG 109 (152)
T ss_dssp ------------------------------------------SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCCTTCC
T ss_pred ------------------------------------------CCEEEEEEEeCCCCcCHHHHHHHhccceeccCCCCCcc
Confidence 12478999999999999999999999999887778999
Q ss_pred cchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 602 LGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 602 LGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
|||+|||++++.|||+|++.+.+ +.|++|+|.+|+..
T Consensus 110 lGL~i~~~~~~~~gG~i~~~~~~--~~G~~~~i~lP~~~ 146 (152)
T 1id0_A 110 VGLAVAREITEQYEGKIVAGESM--LGGARMEVIFGRQH 146 (152)
T ss_dssp SCHHHHHHHHHHTTCEEEEEECT--TSSEEEEEEECCCC
T ss_pred cCHHHHHHHHHHcCCEEEEEeCC--CCcEEEEEEEeccc
Confidence 99999999999999999998865 35999999998753
No 15
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=6.5e-23 Score=206.44 Aligned_cols=145 Identities=23% Similarity=0.379 Sum_probs=115.4
Q ss_pred eeeeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCC
Q 042553 440 IEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP 519 (1131)
Q Consensus 440 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~ 519 (1131)
+.+++|+.++++++++.+...+ +++.+.++.+.. ..+.+|+.+|.|||.|||+||+||++.|.|.|.+...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~~~-----~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~-- 74 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVPSPT-----CIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSS-- 74 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSCCC-----CEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE--
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEccCCC-----ceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec--
Confidence 4678999999999999987765 466777765432 3588999999999999999999999999877766432
Q ss_pred CCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC-CCC
Q 042553 520 SAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE-GEG 598 (1131)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~-~~~ 598 (1131)
...+.|+|.|+|+||+++.++++|+||++.+. ..+
T Consensus 75 --------------------------------------------~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~~~ 110 (150)
T 1ysr_A 75 --------------------------------------------RAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHS 110 (150)
T ss_dssp --------------------------------------------TTEEEEEEEESSSCCCGGGHHHHHTSCC--------
T ss_pred --------------------------------------------CCEEEEEEEECCCCCCHHHHHHHhcccccCCCCCCC
Confidence 12578999999999999999999999998644 346
Q ss_pred CcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 599 GTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 599 GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
|+||||+|||++++.|||+|++.+.+ +.|++|++.+|+.
T Consensus 111 g~GlGL~i~~~~~~~~gG~i~~~~~~--~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 111 GSGLGLALVAQQAQLHGGTASLENSP--LGGARLVLRLPGP 149 (150)
T ss_dssp ---CCCHHHHHHHHHTTCEEEEEECT--TSSEEEEEEEECC
T ss_pred CCCcCHHHHHHHHHHcCCEEEEeecC--CCCEEEEEEEeCC
Confidence 99999999999999999999998865 3599999999864
No 16
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.90 E-value=1.9e-22 Score=215.89 Aligned_cols=188 Identities=13% Similarity=0.107 Sum_probs=140.1
Q ss_pred HHHHHHHchHhhHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHH
Q 042553 370 KSLAFANASHDIRAALAGITGLIELCYVEAGP-GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGE 448 (1131)
Q Consensus 370 ks~flA~iSHELRTPLt~I~g~~ell~~~~~~-~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ 448 (1131)
+.++...+.|++++||++|.++++++...... .+...+.+..+...+.+++..+++++... .+.++.+
T Consensus 28 r~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l~~ 96 (218)
T 3ehh_A 28 RQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRLKD 96 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCHHH
Confidence 45667889999999999999999987654332 24456778888888887777777776432 3467778
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCC
Q 042553 449 LLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLS 528 (1131)
Q Consensus 449 ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~ 528 (1131)
.++.+...+ ..+++.+.++.+.... .....+...|.||+.||++||+||++.|.|.|.+...
T Consensus 97 ~l~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~----------- 158 (218)
T 3ehh_A 97 ELINIKQIL----EAADIMFIYEEEKWPE---NISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQL----------- 158 (218)
T ss_dssp HHHHHHHHH----HHTTCEEECCCCCCCS---CCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE-----------
T ss_pred HHHHHHHHH----HhcCCEEEEeCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEe-----------
Confidence 777766654 5678988887654332 1234688899999999999999999988888876432
Q ss_pred CCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHH
Q 042553 529 SSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQ 608 (1131)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk 608 (1131)
...+.|+|.|+|+||+++.+ +|+||||+|||
T Consensus 159 -----------------------------------~~~~~i~V~D~G~Gi~~~~~--------------~g~GlGL~~~~ 189 (218)
T 3ehh_A 159 -----------------------------------WKEVVITVSDDGTFKGEENS--------------FSKGHGLLGMR 189 (218)
T ss_dssp -----------------------------------TTEEEEEEEESSCCCC----------------------CHHHHHH
T ss_pred -----------------------------------CCEEEEEEEECCcCCCCCCC--------------CCCCCCHHHHH
Confidence 12588999999999999876 58999999999
Q ss_pred HHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 609 SLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 609 ~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
++++.|||+|++.|.+ ||+|+|.+|+.
T Consensus 190 ~~v~~~gG~i~~~s~~----Gt~~~i~lP~~ 216 (218)
T 3ehh_A 190 ERLEFANGSLHIDTEN----GTKLTMAIPNN 216 (218)
T ss_dssp HHHHHTTCEEEEECSS----SEEEEEEEEC-
T ss_pred HHHHHcCCEEEEeCCC----CeEEEEEEecC
Confidence 9999999999998753 99999999875
No 17
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.88 E-value=5.7e-22 Score=199.33 Aligned_cols=145 Identities=28% Similarity=0.503 Sum_probs=124.2
Q ss_pred eeeeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccC-CCeEEEEEeecC
Q 042553 440 IEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS-EGHISVRACVKK 518 (1131)
Q Consensus 440 ~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~-~G~I~v~~~~~~ 518 (1131)
+.+++++.+++++++..+...+..+++++.++.+... ..+.+|+..|.|||.|||+||+||++ .|.|.|.+...
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~- 76 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNED----LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM- 76 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSS----CEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEC-
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCC----cEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEec-
Confidence 4678999999999999999999999999998765432 35889999999999999999999995 56777765421
Q ss_pred CCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCC
Q 042553 519 PSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEG 598 (1131)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~ 598 (1131)
...+.|.|.|+|+||+++.++++|++|++.+. +
T Consensus 77 ---------------------------------------------~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~--~ 109 (152)
T 3a0y_A 77 ---------------------------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT--Q 109 (152)
T ss_dssp ---------------------------------------------SSEEEEEEEEESCCCCGGGTTGGGSTTCCCC----
T ss_pred ---------------------------------------------CCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC--C
Confidence 12588999999999999999999999998653 5
Q ss_pred CcccchHHHHHHHH-HhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 599 GTGLGLGIVQSLVR-LMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 599 GtGLGLsIvk~Lv~-~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
|+||||+|||++++ .|||++.+.+.. .|++|+|.+|+.
T Consensus 110 g~GlGL~i~~~~~~~~~gg~~~~~~~~---~g~~~~i~lP~~ 148 (152)
T 3a0y_A 110 GTGLGLSICRKIIEDEHGGKIWTENRE---NGVVFIFEIPKT 148 (152)
T ss_dssp CCCCSHHHHHHHHHTTTSCEEEEEEET---TEEEEEEEEESC
T ss_pred CCCcCHHHHHHHHHHhCCcEEEEecCC---CCEEEEEEeCCC
Confidence 89999999999999 999999998763 499999999874
No 18
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.88 E-value=6.6e-22 Score=201.63 Aligned_cols=146 Identities=29% Similarity=0.418 Sum_probs=120.2
Q ss_pred cceeeeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeec
Q 042553 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVK 517 (1131)
Q Consensus 438 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~ 517 (1131)
++..+++||.++++++++.+.. ++..+.++..... ..+.+|+.+|.|||.|||+||+||+ .|.|.|.+...
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~~----~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~ 74 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPGS----IEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTE 74 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSSC----CCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEE
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCCC----ceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEc
Confidence 4567899999999999998653 3444444433222 3588999999999999999999999 78888876432
Q ss_pred CCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC-
Q 042553 518 KPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG- 596 (1131)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~- 596 (1131)
...+.|.|.|+|+||+++.++++|++|++.+..
T Consensus 75 ----------------------------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~ 108 (161)
T 1bxd_A 75 ----------------------------------------------PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR 108 (161)
T ss_dssp ----------------------------------------------TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC
T ss_pred ----------------------------------------------CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCCC
Confidence 125789999999999999999999999998653
Q ss_pred -CCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 597 -EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 597 -~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
.+|+||||+|||++++.|||+|++.+.++ .|++|++.+|+..
T Consensus 109 ~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~--~G~~~~i~lP~~~ 151 (161)
T 1bxd_A 109 TISGTGLGLAIVQRIVDNHNGMLELGTSER--GGLSIRAWLPVPV 151 (161)
T ss_dssp CCCCCSCCCCTTHHHHHHHTSEEEEEEETT--TEEEEEEEECCCS
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEEECCC--CeEEEEEEEeCCc
Confidence 36999999999999999999999988753 5999999998864
No 19
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.87 E-value=8.4e-22 Score=199.71 Aligned_cols=156 Identities=25% Similarity=0.358 Sum_probs=106.6
Q ss_pred cceeeeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccC--CCeEEEEEe
Q 042553 438 QLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTS--EGHISVRAC 515 (1131)
Q Consensus 438 ~l~~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~--~G~I~v~~~ 515 (1131)
.++.+++++.++++++++.+... ..+++++.++.+... ..+.+|+.+|.||+.|||+||+||++ .|.|.|++.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~----~~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~ 76 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSL----PELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTR 76 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTC----CCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCC----CeeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEe
Confidence 45678999999999999999987 888999998876543 24789999999999999999999998 567777765
Q ss_pred ecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC
Q 042553 516 VKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE 595 (1131)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~ 595 (1131)
...... .........+.|+|.|+|+||+++.++++|++|++.+.
T Consensus 77 ~~~~~~------------------------------------~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~ 120 (160)
T 1r62_A 77 TAFQLT------------------------------------LHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE 120 (160)
T ss_dssp EEEEEE------------------------------------ETTEEEEEEEEEEEEEECTTC-----------------
T ss_pred cccccc------------------------------------ccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC
Confidence 321100 00001122588999999999999999999999998654
Q ss_pred CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 596 GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 596 ~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
+|+||||+|||++++.|||+|++.+.+ + |++|+|.+|+.
T Consensus 121 --~g~GlGL~i~~~~~~~~gG~l~i~s~~--~-~~~~~i~lP~~ 159 (160)
T 1r62_A 121 --GGTGLGLSIARNLIDQHSGKIEFTSWP--G-HTEFSVYLPIR 159 (160)
T ss_dssp -----CHHHHHHHHHHHHTTCEEEEEEET--T-EEEEEEEEEEE
T ss_pred --CCCccCHHHHHHHHHHCCCeEEEEeCC--C-CEEEEEEEecc
Confidence 699999999999999999999998875 2 49999988863
No 20
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.87 E-value=1.7e-21 Score=201.90 Aligned_cols=148 Identities=31% Similarity=0.507 Sum_probs=122.3
Q ss_pred eecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCC-CeEEEEEeecCCCC
Q 042553 443 DFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSE-GHISVRACVKKPSA 521 (1131)
Q Consensus 443 ~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~~~~~~~~~ 521 (1131)
+|||.++++++++.+... ..+++.+.++.++.. ..+.+|+.+|.|||.|||.||+||++. |.|.|.+....
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~----~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~--- 73 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRD----LYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNE--- 73 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSC----CEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEET---
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCC----cEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEcc---
Confidence 689999999999999988 889999998876533 358899999999999999999999975 56766654321
Q ss_pred CCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCC----C
Q 042553 522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG----E 597 (1131)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~----~ 597 (1131)
....+.|+|.|+|+||+++.++++|++|++.+.. .
T Consensus 74 -----------------------------------------~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~ 112 (177)
T 3sl2_A 74 -----------------------------------------EEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKL 112 (177)
T ss_dssp -----------------------------------------TTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------C
T ss_pred -----------------------------------------CCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCC
Confidence 1225889999999999999999999999987542 3
Q ss_pred CCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecccc
Q 042553 598 GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR 641 (1131)
Q Consensus 598 ~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~ 641 (1131)
+|+||||+|||++++.|||+|.+.+..+ .|++|++.+|+...
T Consensus 113 ~g~GlGL~iv~~~~~~~~G~i~i~~~~~--~Gt~~~i~lP~~~~ 154 (177)
T 3sl2_A 113 GGTGLGLAIAKEMVQAHGGDIWADSIEG--KGTTITFTLPYKEE 154 (177)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEEEETT--TEEEEEEEEEEEC-
T ss_pred CCCCcCHHHHHHHHHHcCCEEEEEecCC--CCeEEEEEEeCCCC
Confidence 5999999999999999999999988753 59999999998643
No 21
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.84 E-value=1e-20 Score=198.30 Aligned_cols=147 Identities=22% Similarity=0.316 Sum_probs=118.0
Q ss_pred eeeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhcc-------------CC
Q 042553 441 EEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFT-------------SE 507 (1131)
Q Consensus 441 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT-------------~~ 507 (1131)
.+++++.++++++...+...+..+++.+.++.+.... .....+..++.|||.|||.||+||+ +.
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~ 78 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDT---ELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPI 78 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTC---EEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSS
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcc---cccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCC
Confidence 3689999999999999999999999888776543321 1122344566677999999999995 34
Q ss_pred CeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchH----
Q 042553 508 GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKR---- 583 (1131)
Q Consensus 508 G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~---- 583 (1131)
|.|.|.+... ...+.|+|.|+|+||+++.+
T Consensus 79 ~~I~I~~~~~----------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~ 112 (189)
T 1i58_A 79 GTLILSARHE----------------------------------------------GNNVVIEVEDDGRGIDKEKIIRKA 112 (189)
T ss_dssp EEEEEEEEEE----------------------------------------------TTEEEEEEEECSSCCCHHHHHHHH
T ss_pred CeEEEEEEec----------------------------------------------CCEEEEEEEeCCCCcCHHHHhhhh
Confidence 6777766431 12588999999999999986
Q ss_pred --------------------hhhccCCeecCC---CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEec
Q 042553 584 --------------------KTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFL 638 (1131)
Q Consensus 584 --------------------~~IFe~F~q~~~---~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l 638 (1131)
+++|+||++.+. ..+|+||||+|||++++.|||+|++.+.+ +.||+|++.+|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~--~~Gt~~~i~lPl 188 (189)
T 1i58_A 113 IEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEK--DKGTKVTIRLPL 188 (189)
T ss_dssp HHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHHHHGGGTCCCHHHHHHHHHHHTTCEEEEEEET--TTEEEEEEEEEC
T ss_pred hhccchhhhhhcccchhhhHHHhcCCcccccccCCCCCCCccCHHHHHHHHHHcCCEEEEEeCC--CCceEEEEEEeC
Confidence 999999998654 23699999999999999999999999875 369999999986
No 22
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.83 E-value=4.5e-22 Score=193.63 Aligned_cols=113 Identities=23% Similarity=0.304 Sum_probs=101.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
+..|||||||++.++..++.+|+..||+|. +|.||++|++++++. +||+||+|++||+|||+++++
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~-------------~~DlvllDi~mP~~~G~el~~ 73 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKG-------------QFDIAIIDVNLDGEPSYPVAD 73 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHC-------------CSSEEEECSSSSSCCSHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC-------------CCCEEEEecCCCCCCHHHHHH
Confidence 456899999999999999999999999975 799999999999874 799999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhC
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH 1131 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1131 (1131)
+||+. ++|||++|++.+.+. +.++|+++||+|||+.++|.++|+++.
T Consensus 74 ~lr~~------~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 74 ILAER------NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp HHHHT------CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred HHHcC------CCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 99963 589999999876433 447899999999999999999998763
No 23
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.82 E-value=2.2e-19 Score=173.93 Aligned_cols=117 Identities=33% Similarity=0.558 Sum_probs=108.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..||.|..+.++++|++.+.+. +||+||+|++||+|||++++++||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~-------------~~dlvllD~~~p~~~g~~~~~~l~ 69 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF-------------TPDLIVLXIMMPVMDGFTVLKKLQ 69 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB-------------CCSEEEECSCCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc-------------CCCEEEEeccCCCCcHHHHHHHHH
Confidence 4799999999999999999999999999999999999999763 799999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+... .+++|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 70 ~~~~--~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~ 119 (122)
T 3gl9_A 70 EKEE--WKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119 (122)
T ss_dssp TSTT--TTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred hccc--ccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHH
Confidence 7532 3578999999999999999999999999999999999999999875
No 24
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.81 E-value=3.3e-19 Score=196.82 Aligned_cols=118 Identities=21% Similarity=0.303 Sum_probs=108.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+...|+..|+.|..+.||++|++.+.+. .+||+||+|++||+|||++++++||
T Consensus 125 ~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~------------~~~dlvllD~~mP~~dG~~l~~~lr 192 (259)
T 3luf_A 125 IEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQH------------PAIRLVLVDYYMPEIDGISLVRMLR 192 (259)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC------------TTEEEEEECSCCSSSCHHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC------------CCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999763 2489999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+... ..++|||++|++...+...+|+++||++||.||++.++|..+|+++
T Consensus 193 ~~~~--~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~ 242 (259)
T 3luf_A 193 ERYS--KQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHN 242 (259)
T ss_dssp HHCC--TTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred hccC--CCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHH
Confidence 8632 3468999999999999999999999999999999999999998764
No 25
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.80 E-value=2.3e-18 Score=189.52 Aligned_cols=117 Identities=32% Similarity=0.543 Sum_probs=109.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+.+||||||++.++..+..+|+..||.|..+.||.+|++.+... +||+||+|++||+|||++++++
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~-------------~~dlvl~D~~mp~~~G~~l~~~ 194 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN-------------HIDIVLSDVNMPNMDGYRLTQR 194 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHS-------------CCSEEEEEESSCSSCCHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC-------------CCCEEEEcCCCCCCCHHHHHHH
Confidence 457899999999999999999999999999999999999999873 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+.. +++|||++|++...+...+|+++||++||.||++.++|..+|+++
T Consensus 195 ir~~~----~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~ 244 (254)
T 2ayx_A 195 IRQLG----LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLY 244 (254)
T ss_dssp HHHHH----CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHH
T ss_pred HHhcC----CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHH
Confidence 99863 368999999999999999999999999999999999999998764
No 26
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.80 E-value=9.9e-19 Score=174.39 Aligned_cols=122 Identities=27% Similarity=0.424 Sum_probs=108.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 996 ~~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
.++.+||||||++..+..+..+|+..|+.+..+.++++|++.+... +||+||+|+.||+|||+++++
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-------------~~dlvl~D~~mp~~~g~~~~~ 78 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEE-------------DYDAVIVDLHMPGMNGLDMLK 78 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHS-------------CCSEEEEESCCSSSCHHHHHH
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHH
Confidence 3457899999999999999999999999999999999999999863 799999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+......+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++
T Consensus 79 ~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~ 133 (143)
T 3m6m_D 79 QLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADL 133 (143)
T ss_dssp HHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHH
Confidence 9997543334568999999999999999999999999999999999999999875
No 27
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.79 E-value=1.3e-18 Score=171.89 Aligned_cols=118 Identities=27% Similarity=0.410 Sum_probs=109.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+..+|+..||.|..+.++++|++.+.+. .||+||+|+.||++||++++++|
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-------------~~dlvl~D~~lp~~~g~~~~~~l 70 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKN-------------LPDALICDVLLPGIDGYTLCKRV 70 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS-------------CCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 45899999999999999999999999999999999999999863 79999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+... .+++|||++|+..+.+...+++++|+++||.||++.++|..+|+++
T Consensus 71 r~~~~--~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 121 (136)
T 3t6k_A 71 RQHPL--TKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNI 121 (136)
T ss_dssp HHSGG--GTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHH
T ss_pred HcCCC--cCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHH
Confidence 97532 3478999999999999999999999999999999999999999864
No 28
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.79 E-value=1.5e-18 Score=170.78 Aligned_cols=121 Identities=30% Similarity=0.446 Sum_probs=106.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
.+||||||++..+..++.+|+..|+ .|..+.+|.+|++.+..... ...+||+||+|+.||+|||++++++|
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~--------~~~~~dlvllD~~mp~~~G~~~~~~l 74 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS--------KGENYNMIFMDVQMPKVDGLLSTKMI 74 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHH--------HTCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHh--------cCCCCCEEEEeCCCCCCChHHHHHHH
Confidence 5799999999999999999999997 58899999999999875100 00269999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+.. .+.+|||++|++...+...+++++|+++||.||++.++|..+|+++
T Consensus 75 r~~~---~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~ 124 (133)
T 2r25_B 75 RRDL---GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEF 124 (133)
T ss_dssp HHHS---CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred Hhhc---CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 9742 2358999999999999999999999999999999999999999875
No 29
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.78 E-value=1.9e-18 Score=166.63 Aligned_cols=114 Identities=34% Similarity=0.489 Sum_probs=106.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+...|+..||.|..+.++++|++.+.+. +||+||+|+.||++||++++++||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-------------~~dlii~D~~~p~~~g~~~~~~lr 69 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL-------------QPDLILLDIMLPNKDGVEVCREVR 69 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-------------CCSEEEEETTSTTTHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhC-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999863 799999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .++|||++|+........+++++|+++||.||++.++|..+|+++
T Consensus 70 ~~-----~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~ 116 (120)
T 3f6p_A 70 KK-----YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKAN 116 (120)
T ss_dssp TT-----CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHH
T ss_pred hc-----CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHH
Confidence 63 258999999999999999999999999999999999999999864
No 30
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.78 E-value=2.8e-18 Score=167.61 Aligned_cols=119 Identities=30% Similarity=0.464 Sum_probs=107.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
..+||||||++..+..++.+|++.|+. +..+.++.+|++.+... .+||+||+|++||+|||++++++
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~------------~~~dlvi~D~~~p~~~g~~~~~~ 72 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN------------ADTKVLITDWNMPEMNGLDLVKK 72 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC------------TTCCEEEECSCCSSSCHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC------------CCCCEEEEeCCCCCCCHHHHHHH
Confidence 468999999999999999999999995 89999999999988753 26999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+... .+++|||++|++.+.+...+++++|+++||.||++.++|..+|+.+
T Consensus 73 lr~~~~--~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~ 124 (129)
T 3h1g_A 73 VRSDSR--FKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 124 (129)
T ss_dssp HHTSTT--CTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHH
T ss_pred HHhcCC--CCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHH
Confidence 997532 3478999999999999999999999999999999999999999875
No 31
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.77 E-value=2.7e-19 Score=200.45 Aligned_cols=113 Identities=21% Similarity=0.281 Sum_probs=104.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-CCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-IMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-~mdG~e~~r 1075 (1131)
+.+||||||++.++..+..+|+..||.|. .|.||.+|++.+... +|||||||++|| +|||+++++
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~-------------~~dlvl~D~~MPd~mdG~e~~~ 226 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRR-------------TPGLVLADIQLADGSSGIDAVK 226 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHC-------------CCSEEEEESCCTTSCCTTTTTH
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhC-------------CCCEEEEcCCCCCCCCHHHHHH
Confidence 45899999999999999999999999999 999999999999874 799999999999 899999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+.. ++|||++|++. ++..+|+++||++||+||++.++|..+|+++
T Consensus 227 ~ir~~~-----~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~ 274 (286)
T 3n0r_A 227 DILGRM-----DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQA 274 (286)
T ss_dssp HHHHHT-----TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHH
T ss_pred HHHhcC-----CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHH
Confidence 999863 79999999985 4567899999999999999999999999864
No 32
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.77 E-value=4e-18 Score=181.44 Aligned_cols=134 Identities=49% Similarity=0.839 Sum_probs=110.0
Q ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHH
Q 042553 995 PLRGKKILVADDSMMLRRVAEINLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073 (1131)
Q Consensus 995 ~~~~~~ILvvdD~~~~~~~l~~~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~ 1073 (1131)
...+.+||||||++.++..+..+|+..|+ .|..+.++++|++.+..........+.....+||+||+|+.||+|||+++
T Consensus 58 ~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el 137 (206)
T 3mm4_A 58 FLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEA 137 (206)
T ss_dssp TTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHH
T ss_pred ccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHH
Confidence 35678999999999999999999999998 89999999999999975200000000000126999999999999999999
Q ss_pred HHHHhhhhccCCCCccEEEEcccC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHI-SGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~-~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+++||+.+....+.+|||++|+.. ..+...+++++|+++||.||++ +|..+|+++
T Consensus 138 ~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~ 193 (206)
T 3mm4_A 138 TREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREI 193 (206)
T ss_dssp HHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHH
T ss_pred HHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHH
Confidence 999998654334679999999998 7788889999999999999999 899888875
No 33
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.77 E-value=1.9e-18 Score=180.20 Aligned_cols=117 Identities=23% Similarity=0.315 Sum_probs=108.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
...+||||||++..+..+..+|+..||.|..|.+|.+|++.+... +||+||+|+.||+|||++++++
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-------------~~dlvl~D~~lp~~~g~~~~~~ 72 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAE-------------KFEFITVXLHLGNDSGLSLIAP 72 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTS-------------CCSEEEECSEETTEESHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC-------------CCCEEEEeccCCCccHHHHHHH
Confidence 456899999999999999999999999999999999999999763 7999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+++|||++|++.+.+...+|+++|+++||.||++.++|..+|+.+
T Consensus 73 l~~~----~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 122 (184)
T 3rqi_A 73 LCDL----QPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTN 122 (184)
T ss_dssp HHHH----CTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTT
T ss_pred HHhc----CCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHH
Confidence 9985 3578999999999999999999999999999999999999988653
No 34
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.76 E-value=5.1e-18 Score=166.35 Aligned_cols=125 Identities=15% Similarity=0.133 Sum_probs=98.2
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCC
Q 042553 444 FDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIG 523 (1131)
Q Consensus 444 ~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~ 523 (1131)
+++.+.++.+.. .+..+++++.++.+.... .....|+..|.|++.||++||+||++.+.|.|++...
T Consensus 2 v~l~~~l~~~~~----~~~~~~i~~~~~~~~~~~---~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~------ 68 (128)
T 3ehg_A 2 IRLKDELINIKQ----ILEAADIMFIYEEEKWPE---NISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQL------ 68 (128)
T ss_dssp CCHHHHHHHHHH----HHHHTTCEEECCCCSCCS---CCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE------
T ss_pred ccHHHHHHHHHH----HHHHcCCEEEEEcCcccc---ccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEe------
Confidence 455555555544 556789999887654321 1234588999999999999999999888888876432
Q ss_pred CCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccc
Q 042553 524 NPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLG 603 (1131)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLG 603 (1131)
...+.|+|.|+|+||+++.+ +|+|||
T Consensus 69 ----------------------------------------~~~~~i~V~D~G~Gi~~~~~--------------~g~GlG 94 (128)
T 3ehg_A 69 ----------------------------------------WKEVVITVSDDGTFKGEENS--------------FSKGHG 94 (128)
T ss_dssp ----------------------------------------TTEEEEEEEESSCCCSCSSC--------------CCTTSH
T ss_pred ----------------------------------------CCEEEEEEEECCcCcCcccC--------------CCCCcc
Confidence 12588999999999999866 589999
Q ss_pred hHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 604 LGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 604 LsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
|+|||++++.|||+|++.|.+ ||+|++.+|+.
T Consensus 95 L~~~~~~~~~~gG~i~~~s~~----Gt~~~i~lP~~ 126 (128)
T 3ehg_A 95 LLGMRERLEFANGSLHIDTEN----GTKLTMAIPNN 126 (128)
T ss_dssp HHHHHHHHHHTTCEEEEECSS----SEEEEEEEEC-
T ss_pred HHHHHHHHHHcCCEEEEEeCC----CEEEEEEEecC
Confidence 999999999999999998753 89999999875
No 35
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.75 E-value=2.6e-17 Score=159.60 Aligned_cols=116 Identities=25% Similarity=0.337 Sum_probs=107.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..++.+|+..|+.+..+.++.+|++.+... +||+||+|+.||+++|++++++|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-------------~~dlvi~D~~l~~~~g~~~~~~l 69 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV-------------RNGVLVTDLRMPDMSGVELLRNL 69 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC-------------CSEEEEEECCSTTSCHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC-------------CCCEEEEECCCCCCCHHHHHHHH
Confidence 35899999999999999999999999999999999999988753 69999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .+++|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 70 ~~~----~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~ 118 (126)
T 1dbw_A 70 GDL----KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERA 118 (126)
T ss_dssp HHT----TCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred Hhc----CCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHH
Confidence 975 3478999999999999999999999999999999999999999864
No 36
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.75 E-value=2.6e-17 Score=159.08 Aligned_cols=115 Identities=27% Similarity=0.386 Sum_probs=107.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..||.+..+.++.+|++.+... +||+||+|+.||+++|++++++||
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~-------------~~dlvl~D~~l~~~~g~~~~~~l~ 70 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE-------------RPDLVLLDMKIPGMDGIEILKRMK 70 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH-------------CCSEEEEESCCTTCCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-------------CCCEEEEecCCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999864 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .+++|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 71 ~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (124)
T 1srr_A 71 VI----DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKY 118 (124)
T ss_dssp HH----CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHH
T ss_pred Hh----CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHH
Confidence 75 3478999999999999999999999999999999999999999875
No 37
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.74 E-value=3e-17 Score=160.83 Aligned_cols=115 Identities=26% Similarity=0.328 Sum_probs=107.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|++++++||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-------------~~dlvl~D~~l~~~~g~~~~~~l~ 70 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE-------------FFNLALFXIKLPDMEGTELLEKAH 70 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS-------------CCSEEEECSBCSSSBHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcC-------------CCCEEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999999999999999999999999999863 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .+++|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 71 ~~----~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 118 (132)
T 3crn_A 71 KL----RPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEK 118 (132)
T ss_dssp HH----CTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred hh----CCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHH
Confidence 75 2478999999999999999999999999999999999999999764
No 38
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.74 E-value=3.4e-17 Score=157.12 Aligned_cols=115 Identities=25% Similarity=0.362 Sum_probs=106.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
.+||||||++..+..+...|+..||. +..+.++++|++.+... +||+||+|+.||+++|++++++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~-------------~~dlil~D~~l~~~~g~~~~~~l 69 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL-------------KPDIVTMDITMPEMNGIDAIKEI 69 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-------------CCSEEEEECSCGGGCHHHHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc-------------CCCEEEEeCCCCCCcHHHHHHHH
Confidence 57999999999999999999999999 56899999999999864 69999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .+++|||++|+....+...+++++|+++|+.||++.++|..+|+++
T Consensus 70 ~~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 70 MKI----DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp HHH----CTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred Hhh----CCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 975 2468999999999999999999999999999999999999999875
No 39
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.74 E-value=4.8e-17 Score=156.11 Aligned_cols=114 Identities=25% Similarity=0.438 Sum_probs=106.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||||||++..+..+...|+..|+.|..+.++.+|++.+... .||+||+|+.||+++|+++++++|+
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~-------------~~dlil~D~~l~~~~g~~~~~~l~~ 68 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH-------------IPDIAIVDLGLPDEDGLSLIRRWRS 68 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS-------------CCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhcc-------------CCCEEEEecCCCCCCHHHHHHHHHh
Confidence 799999999999999999999999999999999999999863 6999999999999999999999996
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
. .+++|||++|+....+...+++++|+++|+.||++.++|..+|+++
T Consensus 69 ~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 115 (121)
T 2pl1_A 69 N----DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQAL 115 (121)
T ss_dssp T----TCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred c----CCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHH
Confidence 4 3468999999999999999999999999999999999999998864
No 40
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.73 E-value=4.3e-17 Score=164.49 Aligned_cols=118 Identities=27% Similarity=0.377 Sum_probs=109.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+.+. +||+||+|+.||+++|+++++.|
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-------------~~dlii~D~~l~~~~g~~~~~~l 73 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT-------------RPDLIISDVLMPEMDGYALCRWL 73 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC-------------CCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999763 79999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+... .+.+|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 74 r~~~~--~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 124 (154)
T 3gt7_A 74 KGQPD--LRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRL 124 (154)
T ss_dssp HHSTT--TTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHH
T ss_pred HhCCC--cCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 98532 3578999999999999999999999999999999999999999864
No 41
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.73 E-value=2.9e-17 Score=158.39 Aligned_cols=117 Identities=30% Similarity=0.511 Sum_probs=101.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
++||||||++..+..+..+|+..|+.+..+.++.+|++.+... +||+||+|+.||+++|++++++||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~-------------~~dlvi~D~~l~~~~g~~~~~~l~ 68 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN-------------KPDLILMDIQLPEISGLEVTKWLK 68 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH-------------CCSEEEEESBCSSSBHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999998764 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+.. ..+++|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 69 ~~~--~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (124)
T 1mb3_A 69 EDD--DLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRL 118 (124)
T ss_dssp HST--TTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHH
T ss_pred cCc--cccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Confidence 752 13478999999998888888999999999999999999999999864
No 42
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.73 E-value=3.6e-17 Score=159.42 Aligned_cols=118 Identities=28% Similarity=0.428 Sum_probs=102.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 996 ~~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
..+.+||||||++..+..+..+|+..|+.+..+.++.+|++.+.+. +||+||+|+.||+++|+++++
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-------------~~dlvi~d~~l~~~~g~~~~~ 71 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF-------------TPDLMICDIAMPRMNGLKLLE 71 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC-------------CCSEEEECCC-----CHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC-------------CCCEEEEecCCCCCCHHHHHH
Confidence 3567999999999999999999999999999999999999999763 799999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL-NRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~-~~~~L~~~I~~l 1130 (1131)
+||+. .+++|||++|+....+...+++++|+++||.||+ +.++|..+|+++
T Consensus 72 ~l~~~----~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~ 123 (130)
T 3eod_A 72 HIRNR----GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 (130)
T ss_dssp HHHHT----TCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHH
T ss_pred HHHhc----CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHH
Confidence 99975 3578999999999999999999999999999999 899999998864
No 43
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.73 E-value=7.7e-17 Score=156.46 Aligned_cols=118 Identities=31% Similarity=0.485 Sum_probs=106.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
..+||||||++..+..++.+|+..|+ .+..+.++.+|++.+... +||+||+|+.||+++|++++++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~-------------~~dlvi~D~~l~~~~g~~l~~~ 70 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG-------------GYGFVISDWNMPNMDGLELLKT 70 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC-------------CCCEEEEESCCSSSCHHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHHHH
Confidence 35799999999999999999999999 799999999999998753 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+... .+++|||++|+....+...+++++|+++|+.||++.++|..+|+++
T Consensus 71 l~~~~~--~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~ 122 (128)
T 1jbe_A 71 IRAXXA--MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122 (128)
T ss_dssp HHC--C--CTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHhhcc--cCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHH
Confidence 997432 3478999999999999999999999999999999999999998864
No 44
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.73 E-value=2.3e-17 Score=161.24 Aligned_cols=127 Identities=21% Similarity=0.325 Sum_probs=100.5
Q ss_pred eeeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCC
Q 042553 441 EEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520 (1131)
Q Consensus 441 ~~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~ 520 (1131)
.+.++|.++++++++.+ ..+++.+.++.+.... .....|+..|.||+.||++||+||++.|.|.|.+...
T Consensus 2 ~~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~~--- 71 (129)
T 3zxo_A 2 AMVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLS---VVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKVD--- 71 (129)
T ss_dssp ---CCHHHHHHHHHHHH----SCTTSEEEEEEESCGG---GSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEES---
T ss_pred CccccHHHHHHHHHHHH----hhcCceEEEEecCCcc---cCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEc---
Confidence 35789999999999887 5677777766544322 1234568899999999999999999888888876421
Q ss_pred CCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCc
Q 042553 521 AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGT 600 (1131)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~Gt 600 (1131)
.. +.|.|.|+|+||+++. +
T Consensus 72 -------------------------------------------~~-~~i~v~D~G~gi~~~~-----------------~ 90 (129)
T 3zxo_A 72 -------------------------------------------DD-LCIEVTDNGRGMPDEF-----------------T 90 (129)
T ss_dssp -------------------------------------------SE-EEEEEEECCCCCTTTT-----------------C
T ss_pred -------------------------------------------CC-EEEEEecCCCCCCccc-----------------C
Confidence 12 7899999999999875 6
Q ss_pred ccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 601 GLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 601 GLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
||||+|||++++.|||+|.+.+.++ +.|++|++.+|+.
T Consensus 91 GlGL~i~~~~~~~~gG~i~~~~~~~-~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 91 GSGLTNLRQRAEQAGGEFTLASMPG-ASGTVLRWSAPLS 128 (129)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECTT-TCCEEEEEEEESC
T ss_pred CcCHHHHHHHHHHcCCEEEEeeCCC-CCcEEEEEEecCC
Confidence 9999999999999999999988753 1599999999874
No 45
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.72 E-value=5.5e-17 Score=177.64 Aligned_cols=117 Identities=25% Similarity=0.424 Sum_probs=109.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
...+||||||++..+..+..+|+..||.|..|.++.+|++.+... +||+||+|+.||++||++++++
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-------------~~dlvllD~~lp~~~g~~~~~~ 88 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARET-------------RPDAVILDVXMPGMDGFGVLRR 88 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH-------------CCSEEEEESCCSSSCHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC-------------CCCEEEEeCCCCCCCHHHHHHH
Confidence 346899999999999999999999999999999999999999874 7999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+++|||++|++.+.+...+++++|+++||.||++.++|..+|+.+
T Consensus 89 lr~~----~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~ 138 (250)
T 3r0j_A 89 LRAD----GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVI 138 (250)
T ss_dssp HHHT----TCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHH
T ss_pred HHhc----CCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Confidence 9975 3478999999999999999999999999999999999999999864
No 46
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.72 E-value=1.2e-16 Score=153.97 Aligned_cols=114 Identities=23% Similarity=0.349 Sum_probs=106.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+...|+..||.+..+.++.+|++.+... +||+||+|+.||+++|++++++||
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~-------------~~dlvi~D~~l~~~~g~~~~~~l~ 70 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY-------------DINLVIMDINLPGKNGLLLARELR 70 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS-------------CCSEEEECSSCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcC-------------CCCEEEEcCCCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999863 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. +++|||++|+........+++++|+++|+.||++.++|..+|+++
T Consensus 71 ~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 117 (123)
T 1xhf_A 71 EQ-----ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 (123)
T ss_dssp HH-----CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred hC-----CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHH
Confidence 75 368999999999999999999999999999999999999998764
No 47
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.72 E-value=9.6e-17 Score=160.84 Aligned_cols=125 Identities=21% Similarity=0.286 Sum_probs=107.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGA--TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~--~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
..+||||||++..+..++.+|+..|+ .|..+.++.+|++.+..... ......||+||+|+.||++||+++++
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~------~~~~~~~dlillD~~lp~~~g~~l~~ 81 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGE------YENSPRPNLILLDLNLPKKDGREVLA 81 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGG------GTTCCCCSEEEECSCCSSSCHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccc------cccCCCCCEEEEeCCCCCCcHHHHHH
Confidence 35899999999999999999999887 88999999999999874100 00012699999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+.. ..+++|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 82 ~l~~~~--~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 134 (149)
T 1i3c_A 82 EIKQNP--DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGI 134 (149)
T ss_dssp HHHHCT--TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HHHhCc--CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 999752 12478999999999999999999999999999999999999999864
No 48
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.72 E-value=1.1e-16 Score=160.93 Aligned_cols=117 Identities=24% Similarity=0.301 Sum_probs=109.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
...+||||||++..+..+..+|+..||.|..+.++.+|++.+.+. +||+||+|+.||+++|++++++
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-------------~~dlvi~D~~l~~~~g~~~~~~ 79 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR-------------EVDLVISAAHLPQMDGPTLLAR 79 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS-------------CCSEEEEESCCSSSCHHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC-------------CCCEEEEeCCCCcCcHHHHHHH
Confidence 456899999999999999999999999999999999999999873 7999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAG-MDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+.+|||++|+....+...+++++| +++||.||++.++|..+|+.+
T Consensus 80 l~~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~ 130 (153)
T 3hv2_A 80 IHQQ----YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQA 130 (153)
T ss_dssp HHHH----CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHH
T ss_pred HHhH----CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHH
Confidence 9985 3578999999999999999999999 999999999999999999764
No 49
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.72 E-value=1.3e-16 Score=153.52 Aligned_cols=114 Identities=25% Similarity=0.364 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+... .||+||+|+.||+++|+++++.||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-------------~~dlvi~d~~l~~~~g~~~~~~l~ 69 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ-------------SVDLILLDINLPDENGLMLTRALR 69 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS-------------CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcC-------------CCCEEEEeCCCCCCChHHHHHHHH
Confidence 4799999999999999999999999999999999999998763 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. +.+|||++|+....+...+++++|+++|+.||++.++|..+|+++
T Consensus 70 ~~-----~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~ 116 (122)
T 1zgz_A 70 ER-----STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNL 116 (122)
T ss_dssp TT-----CCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred hc-----CCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHH
Confidence 72 368999999999999999999999999999999999999998764
No 50
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.72 E-value=1.1e-16 Score=153.04 Aligned_cols=114 Identities=30% Similarity=0.448 Sum_probs=105.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+... +||+||+|+.||+++|++++++||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~-------------~~dlvl~D~~l~~~~g~~~~~~l~ 68 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-------------QPDIIILDLMLPEIDGLEVAKTIR 68 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH-------------CCSEEEECSSCSSSCHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhC-------------CCCEEEEeccCCCCCHHHHHHHHH
Confidence 3799999999999999999999999999999999999998764 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. +++|||++|+........+++++|+++|+.||++.++|..+++.+
T Consensus 69 ~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 115 (120)
T 2a9o_A 69 KT-----SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKAL 115 (120)
T ss_dssp HH-----CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred hC-----CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHH
Confidence 63 368999999999998899999999999999999999999998764
No 51
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.72 E-value=9.4e-17 Score=161.22 Aligned_cols=127 Identities=24% Similarity=0.394 Sum_probs=109.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGA--TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~--~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
..+||||||++..+..+..+|+..|+ .|..+.++.+|++.++.... .+.....+||+||+|+.||+++|+++++
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~----~~~~~~~~~dliilD~~l~~~~g~~~~~ 79 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDK----SGRVSAGRAQLVLLDLNLPDMTGIDILK 79 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTS----SSGGGTTCBEEEEECSBCSSSBHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccc----ccccccCCCCEEEEeCCCCCCcHHHHHH
Confidence 36899999999999999999999998 89999999999999963100 0000124799999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+.. ..+.+|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 80 ~lr~~~--~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 80 LVKENP--HTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQL 132 (152)
T ss_dssp HHHHST--TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HHHhcc--cccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 999842 24578999999999999999999999999999999999999999875
No 52
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.72 E-value=9e-17 Score=162.65 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=109.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
..+||||||++..+..+..+|+..||.+. .+.++.+|++.+.+.. ..||+||+|+.||+++|++++++
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~-----------~~~dliilD~~l~~~~g~~~~~~ 104 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHY-----------PNIDIVTLXITMPKMDGITCLSN 104 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----------GGCCEEEECSSCSSSCHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcC-----------CCCCEEEEeccCCCccHHHHHHH
Confidence 46899999999999999999999999988 9999999999998630 15899999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhC
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH 1131 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1131 (1131)
||+. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++.
T Consensus 105 lr~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 105 IMEF----DKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp HHHH----CTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred HHhh----CCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 9986 35789999999999999999999999999999999999999998763
No 53
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.72 E-value=8.6e-17 Score=157.81 Aligned_cols=115 Identities=24% Similarity=0.388 Sum_probs=105.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLG--ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g--~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+|||+||++..+..++.+|+..| +.+..+.++.+|++.+... +||+||+|+.||+++|++++++
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~-------------~~dlvilD~~lp~~~g~~~~~~ 70 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY-------------NPNVVILDIEMPGMTGLEVLAE 70 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH-------------CCSEEEECSSCSSSCHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc-------------CCCEEEEecCCCCCCHHHHHHH
Confidence 479999999999999999999877 5678899999999999864 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+++|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 71 l~~~----~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~ 120 (133)
T 3b2n_A 71 IRKK----HLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKV 120 (133)
T ss_dssp HHHT----TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHH
T ss_pred HHHH----CCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 9974 3479999999999999999999999999999999999999999864
No 54
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.72 E-value=9.3e-17 Score=159.30 Aligned_cols=125 Identities=17% Similarity=0.218 Sum_probs=109.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGA--TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~--~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
..+||||||++..+..+..+|+..|+ .|..+.++.+|++.+.+... ...+||+||+|+.||+++|+++++
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~--------~~~~~dlvi~D~~l~~~~g~~~~~ 80 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYA--------AGRWPSIICIDINMPGINGWELID 80 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHT--------SSCCCSEEEEESSCSSSCHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhc--------cCCCCCEEEEcCCCCCCCHHHHHH
Confidence 35899999999999999999999999 89999999999999986200 012799999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAG-MDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+......+.+|||++|+....+...+++.+| +++||.||++.++|..+|++.
T Consensus 81 ~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~ 136 (146)
T 3ilh_A 81 LFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKV 136 (146)
T ss_dssp HHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHH
Confidence 9998532224578999999999999999999999 999999999999999999864
No 55
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.72 E-value=8.7e-17 Score=158.12 Aligned_cols=120 Identities=27% Similarity=0.411 Sum_probs=104.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+... + |+||+|+.||+++|++++++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-------------~-dlvllD~~lp~~~g~~~~~~ 71 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE-------------H-KVVFMDVCMPGVENYQIALR 71 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT-------------C-SEEEEECCSSTTTTTHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc-------------C-CEEEEeCCCCCCcHHHHHHH
Confidence 457899999999999999999999999999999999999987542 4 99999999999999999999
Q ss_pred HhhhhccC-CCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRN-QVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~-~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+..... ....|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 72 l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~ 126 (136)
T 1dcf_A 72 IHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDL 126 (136)
T ss_dssp HHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Confidence 99532211 1224688899999999999999999999999999999999999864
No 56
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.71 E-value=2.6e-17 Score=162.15 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=107.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC--CCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI--MNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~--mdG~e~~r~ 1076 (1131)
.+||||||++..+..+..+|+..||.|..+.++++|++.+.+ .+||+||+|+.||+ ++|++++++
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-------------~~~dlvi~D~~l~~~~~~g~~~~~~ 73 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS-------------DDAIGMIIEAHLEDKKDSGIELLET 73 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC-------------TTEEEEEEETTGGGBTTHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-------------cCCCEEEEeCcCCCCCccHHHHHHH
Confidence 589999999999999999999999999999999999998765 37999999999999 999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+++|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 74 l~~~----~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~ 123 (136)
T 3kto_A 74 LVKR----GFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQI 123 (136)
T ss_dssp HHHT----TCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHH
T ss_pred HHhC----CCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHH
Confidence 9986 3578999999999999999999999999999999999999999875
No 57
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.71 E-value=3.5e-17 Score=161.79 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=108.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-CCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRH-LGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-IMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~-~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-~mdG~e~~r 1075 (1131)
..+||||||++..+..++.+|+. .||.|..+.++.+|++.+.+. .+||+||+|+.|| +++|+++++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~------------~~~dlvi~D~~l~~~~~g~~~~~ 71 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL------------DSITLIIMDIAFPVEKEGLEVLS 71 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC------------CCCSEEEECSCSSSHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC------------CCCcEEEEeCCCCCCCcHHHHHH
Confidence 36899999999999999999999 999999999999999988751 2799999999999 999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+... .+++|||++|+..+.+...+++++|+++||.||++.++|..+|+.+
T Consensus 72 ~l~~~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 124 (140)
T 3lua_A 72 AIRNNSR--TANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSV 124 (140)
T ss_dssp HHHHSGG--GTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHH
T ss_pred HHHhCcc--cCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 9998322 4579999999999999999999999999999999999999999865
No 58
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.71 E-value=6.3e-17 Score=157.28 Aligned_cols=117 Identities=25% Similarity=0.406 Sum_probs=107.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
.+||||||++..+..+..+|+..|+ .+..+.++++|++.+... +||+||+|+.||+++|++++++|
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-------------~~dlvl~D~~l~~~~g~~~~~~l 73 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN-------------PHHLVISDFNMPKMDGLGLLQAV 73 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTS-------------CCSEEEECSSSCSSCHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcC-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 5799999999999999999999999 889999999999999863 69999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+... .+++|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 74 ~~~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 124 (129)
T 1p6q_A 74 RANPA--TKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAV 124 (129)
T ss_dssp TTCTT--STTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHH
T ss_pred hcCcc--ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 97531 3478999999999999999999999999999999999999999864
No 59
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=8.6e-17 Score=158.93 Aligned_cols=114 Identities=25% Similarity=0.361 Sum_probs=106.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||||||++..+..+..+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|++++++||+
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-------------~~dlvllD~~l~~~~g~~l~~~l~~ 72 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS-------------KPQLIILDLKLPDMSGEDVLDWINQ 72 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH-------------CCSEEEECSBCSSSBHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhc-------------CCCEEEEecCCCCCCHHHHHHHHHh
Confidence 799999999999999999999999999999999999999864 6999999999999999999999997
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
. .+.+|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 73 ~----~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 119 (137)
T 3cfy_A 73 N----DIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALH 119 (137)
T ss_dssp T----TCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred c----CCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHH
Confidence 5 3478999999999999999999999999999999999999998764
No 60
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.71 E-value=1.6e-16 Score=156.03 Aligned_cols=118 Identities=23% Similarity=0.305 Sum_probs=108.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+..+|+..|+.|..+.++.+|+..+... .+||+||+|+.||+++|++++++|
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~------------~~~dlvi~D~~l~~~~g~~~~~~l 74 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ------------KRIGLMITDLRMQPESGLDLIRTI 74 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC------------TTEEEEEECSCCSSSCHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC------------CCCcEEEEeccCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999863 249999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+.. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++
T Consensus 75 ~~~~---~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 124 (136)
T 3hdv_A 75 RASE---RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKE 124 (136)
T ss_dssp HTST---TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HhcC---CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHH
Confidence 9853 3578999999999999999999999999999999999999999874
No 61
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.71 E-value=4.7e-17 Score=157.92 Aligned_cols=116 Identities=18% Similarity=0.282 Sum_probs=105.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..||.|..+.++++|++.+.+. +||+||+|+.||+++|++++++||
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-------------~~dlii~D~~l~~~~g~~~~~~l~ 70 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR-------------GYDAVFIDLNLPDTSGLALVKQLR 70 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS-------------CCSEEEEESBCSSSBHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999874 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+.. ..+.+|||++|+....+. .+++.+|+++||.||++.++|.++++..
T Consensus 71 ~~~--~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~ 119 (127)
T 3i42_A 71 ALP--MEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSI 119 (127)
T ss_dssp HSC--CSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHH
T ss_pred hhh--ccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHh
Confidence 863 245799999999988877 8899999999999999999999999764
No 62
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.71 E-value=1.3e-16 Score=157.53 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=106.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+... .||+||+|+.||+++|++++++||
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-------------~~dlvllD~~l~~~~g~~l~~~l~ 71 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSN-------------KYDLIFLEIILSDGDGWTLCKKIR 71 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC-------------CCSEEEEESEETTEEHHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHHHHHc
Confidence 5899999999999999999999999999999999999999863 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. . .+|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 72 ~~----~-~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~ 118 (136)
T 2qzj_A 72 NV----T-TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAI 118 (136)
T ss_dssp TT----C-CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred cC----C-CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 74 1 68999999999999999999999999999999999999998764
No 63
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.71 E-value=1e-16 Score=157.70 Aligned_cols=116 Identities=25% Similarity=0.319 Sum_probs=108.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+..+|+..|+.+..+.++.+|++.+++. +||+||+|+.||+++|++++++|
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~-------------~~dlvi~d~~l~~~~g~~~~~~l 73 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH-------------APDVIITDIRMPKLGGLEMLDRI 73 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH-------------CCSEEEECSSCSSSCHHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999874 79999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .+.+|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 74 ~~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 122 (137)
T 3hdg_A 74 KAG----GAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDF 122 (137)
T ss_dssp HHT----TCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHH
T ss_pred Hhc----CCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHH
Confidence 975 3578999999999999999999999999999999999999999875
No 64
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.71 E-value=6.1e-17 Score=159.91 Aligned_cols=118 Identities=19% Similarity=0.376 Sum_probs=107.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+... +||+||+|+.||+++|++++++|
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~-------------~~dlvi~d~~l~~~~g~~~~~~l 72 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR-------------PYAAMTVDLNLPDQDGVSLIRAL 72 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS-------------CCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 36899999999999999999999999999999999999999874 79999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHH-HHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEAD-KTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~-~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+... .+++|||++|+....+... .++++|+++||.||++.++|..+|+++
T Consensus 73 ~~~~~--~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 124 (140)
T 3grc_A 73 RRDSR--TRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRA 124 (140)
T ss_dssp HTSGG--GTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHH
T ss_pred HhCcc--cCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHH
Confidence 98432 3579999999987777766 889999999999999999999999864
No 65
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.70 E-value=3.5e-17 Score=189.67 Aligned_cols=115 Identities=24% Similarity=0.284 Sum_probs=107.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
++||||||++..+..+..+|+..||.|..|.||++|++.+... .||+||+|++||+|||++++++||
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~-------------~~DlvllDi~mP~~dG~ell~~lr 67 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL-------------FFPVIVLDVWMPDGDGVNFIDFIK 67 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHB-------------CCSEEEEESEETTEETTTHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3799999999999999999999999999999999999999874 799999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .+++|||++|++.+.+...+|+++|+++||.||++.++|..+|+++
T Consensus 68 ~~----~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~ 115 (368)
T 3dzd_A 68 EN----SPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHA 115 (368)
T ss_dssp HH----CTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHH
T ss_pred hh----CCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHH
Confidence 76 3578999999999999999999999999999999999999998764
No 66
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.70 E-value=2.7e-16 Score=155.88 Aligned_cols=117 Identities=26% Similarity=0.338 Sum_probs=107.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+... ...||+||+|+.||+++|++++++||
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~-----------~~~~dlvi~d~~l~~~~g~~~~~~l~ 72 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTEN-----------CNSIDVVITDMKMPKLSGMDILREIK 72 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT-----------TTTCCEEEEESCCSSSCHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhC-----------CCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 5899999999999999999999999999999999999999741 13799999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+.+
T Consensus 73 ~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 120 (143)
T 3jte_A 73 KI----TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNA 120 (143)
T ss_dssp HH----CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred Hh----CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 85 3579999999999999999999999999999999999999999764
No 67
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.70 E-value=1.5e-17 Score=163.64 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=108.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g-~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
..+||||||++..+..+..+|+..| |.|..+.++.+|++.+.+ .+||+||+|+.||+++|++++++
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~-------------~~~dlvi~D~~l~~~~g~~~~~~ 80 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD-------------TRPGIVILDLGGGDLLGKPGIVE 80 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT-------------CCCSEEEEEEETTGGGGSTTHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc-------------cCCCEEEEeCCCCCchHHHHHHH
Confidence 3589999999999999999999999 999999999999998765 37999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhC
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH 1131 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l~ 1131 (1131)
||+.. +.+|||++|+....+...+++++|+++||.||++.++|..+|+++.
T Consensus 81 l~~~~----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 81 ARALW----ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp HHGGG----TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC
T ss_pred HHhhC----CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHh
Confidence 99863 3789999999999999999999999999999999999999998753
No 68
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.70 E-value=2.5e-16 Score=154.59 Aligned_cols=125 Identities=20% Similarity=0.311 Sum_probs=108.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGA--TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~--~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
+.+||||||++..+..+..+|+..|+ .|..+.++.+|++.+...... .....||+||+|+.||+++|+++++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~------~~~~~~dlvi~d~~~~~~~g~~~~~ 75 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEY------ANASRPDLILLXLNLPKKDGREVLA 75 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGG------GSCCCCSEEEECSSCSSSCHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHccccc------ccCCCCcEEEEecCCCcccHHHHHH
Confidence 46899999999999999999999998 999999999999999751000 0002699999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+... .+++|||++|+....+...+++++|+++|+.||++.++|..+|+++
T Consensus 76 ~l~~~~~--~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 128 (140)
T 1k68_A 76 EIKSDPT--LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGI 128 (140)
T ss_dssp HHHHSTT--GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HHHcCcc--cccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHH
Confidence 9998531 2468999999999999999999999999999999999999999864
No 69
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.70 E-value=1.6e-16 Score=157.81 Aligned_cols=118 Identities=28% Similarity=0.436 Sum_probs=108.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGAT--VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~--v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
..+||||||++..+..+..+|+..|+. +..+.++.+|++.+... +||+||+|+.||+++|+++++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~-------------~~dlii~D~~l~~~~g~~~~~ 71 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA-------------KYDLIILDIGLPIANGFEVMS 71 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC-------------CCSEEEECTTCGGGCHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC-------------CCCEEEEeCCCCCCCHHHHHH
Confidence 468999999999999999999999987 88999999999999763 799999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL-NRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~-~~~~L~~~I~~l 1130 (1131)
+||+.. ..+.+|||++|+..+.+...+++++|+++||.||+ +.++|..+|+++
T Consensus 72 ~lr~~~--~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~ 125 (144)
T 3kht_A 72 AVRKPG--ANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAI 125 (144)
T ss_dssp HHHSSS--TTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHH
T ss_pred HHHhcc--cccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHH
Confidence 999742 24579999999999999999999999999999999 999999999864
No 70
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.70 E-value=5.5e-17 Score=161.63 Aligned_cols=119 Identities=19% Similarity=0.163 Sum_probs=107.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLG-ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g-~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
.+.+||||||++..+..+..+|+..| |.|..+.++.+|+..+.+.. .+||+||+|+.||+++|+++++
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~-----------~~~dlvi~D~~l~~~~g~~~~~ 87 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGL-----------DAFDILMIDGAALDTAELAAIE 87 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHH-----------TTCSEEEEECTTCCHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcC-----------CCCCEEEEeCCCCCccHHHHHH
Confidence 45789999999999999999999999 99999999999988765310 1699999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+. .+.+|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 88 ~l~~~----~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~ 138 (146)
T 4dad_A 88 KLSRL----HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRA 138 (146)
T ss_dssp HHHHH----CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHH
T ss_pred HHHHh----CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHH
Confidence 99985 3578999999999999999999999999999999999999999865
No 71
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.69 E-value=1.9e-16 Score=155.42 Aligned_cols=115 Identities=29% Similarity=0.446 Sum_probs=106.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
++||||||++..+..+...|+..||.+..+.++.+|++.+... +||+||+|+.||+++|++++++||
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-------------~~dlvl~D~~l~~~~g~~~~~~l~ 70 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETE-------------KPDLIVLDVMLPKLDGIEVCKQLR 70 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH-------------CCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhc-------------CCCEEEEecCCCCCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999998764 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+.. +.+|||++|+........+++++|+++||.||++.++|..+|+.+
T Consensus 71 ~~~----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (136)
T 1mvo_A 71 QQK----LMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAI 118 (136)
T ss_dssp HTT----CCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred cCC----CCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHH
Confidence 752 468999999998887888999999999999999999999998764
No 72
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.69 E-value=2.7e-16 Score=157.64 Aligned_cols=117 Identities=27% Similarity=0.400 Sum_probs=107.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLG--ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g--~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~ 1074 (1131)
...+||||||++..+..+..+|+..| +.|..+.++++|++.+.+. .||+||+|+.||+++|++++
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-------------~~dlii~D~~l~~~~g~~~~ 85 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKE-------------SVDIAILDVEMPVKTGLEVL 85 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTS-------------CCSEEEECSSCSSSCHHHHH
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhcc-------------CCCEEEEeCCCCCCcHHHHH
Confidence 34689999999999999999999887 7899999999999999763 79999999999999999999
Q ss_pred HHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1075 RKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1075 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
++||+. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++
T Consensus 86 ~~l~~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 137 (150)
T 4e7p_A 86 EWIRSE----KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTV 137 (150)
T ss_dssp HHHHHT----TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHH
T ss_pred HHHHHh----CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHH
Confidence 999975 3578999999999999999999999999999999999999999865
No 73
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.69 E-value=2.1e-16 Score=156.09 Aligned_cols=117 Identities=29% Similarity=0.379 Sum_probs=104.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+... .||+||+|+.||+++|++++++||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-------------~~dlvi~D~~l~~~~g~~~~~~l~ 70 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT-------------PPDLVLLDIMMEPMDGWETLERIK 70 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS-------------CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999863 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+.. ..+++|||++|+.........++.+|+++||.||++.++|..+|+.+
T Consensus 71 ~~~--~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~ 120 (138)
T 3c3m_A 71 TDP--ATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHV 120 (138)
T ss_dssp HST--TTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHH
T ss_pred cCc--ccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHH
Confidence 753 13478999999987666666677788999999999999999999764
No 74
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.69 E-value=2.1e-16 Score=154.46 Aligned_cols=116 Identities=24% Similarity=0.345 Sum_probs=101.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+..+|+ .|+.+..+.++.+|++.+.+. +||+||+|+.||+++|++++++|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~-------------~~dlvi~d~~l~~~~g~~~~~~l 69 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH-------------PPDVLISDVNMDGMDGYALCGHF 69 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS-------------CCSEEEECSSCSSSCHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 3589999999999999999999 899999999999999999873 79999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+... .+++|||++|+....+. .+++++|+++||.||++.++|..+|+++
T Consensus 70 ~~~~~--~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 119 (133)
T 3nhm_A 70 RSEPT--LKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHAL 119 (133)
T ss_dssp HHSTT--TTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHH
T ss_pred HhCCc--cCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHH
Confidence 98532 34789999999988777 8999999999999999999999999875
No 75
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.69 E-value=1.8e-16 Score=154.50 Aligned_cols=116 Identities=25% Similarity=0.361 Sum_probs=104.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHL-GATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~-g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+||||||++..+..+..+|+.. |+.+. .+.++++|++.+... +||+||+|+.||+++|++++++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~-------------~~dlvllD~~l~~~~g~~~~~~ 69 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK-------------RPDILLLDIIMPHLDGLAVLER 69 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-------------CCSEEEEESCCSSSCHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC-------------CCCEEEEecCCCCCCHHHHHHH
Confidence 47999999999999999999987 88865 799999999999864 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+.. .+.+|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 70 l~~~~---~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~ 120 (130)
T 1dz3_A 70 IRAGF---EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQV 120 (130)
T ss_dssp HHHHC---SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHH
T ss_pred HHhcC---CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 99741 2467999999999999999999999999999999999999998764
No 76
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.69 E-value=2.9e-16 Score=150.48 Aligned_cols=114 Identities=25% Similarity=0.364 Sum_probs=105.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+... .||+||+|+.||+++|++++++||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-------------~~dlvi~D~~l~~~~g~~~~~~l~ 68 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR-------------KPDLIILDLGLPDGDGIEFIRDLR 68 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH-------------CCSEEEEESEETTEEHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcC-------------CCCEEEEeCCCCCCcHHHHHHHHH
Confidence 3799999999999999999999999999999999999988763 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. +.+|||++|+....+...+++++|+++|+.||++.++|..+|+.+
T Consensus 69 ~~-----~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 115 (121)
T 1zh2_A 69 QW-----SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 (121)
T ss_dssp TT-----CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred hC-----CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHH
Confidence 42 368999999999999999999999999999999999999998764
No 77
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.69 E-value=8.6e-17 Score=157.43 Aligned_cols=115 Identities=19% Similarity=0.225 Sum_probs=104.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
.+||||||++..+..+..+|+..|+.+. .+.++++|++.+.+. +||+||+|+.||+++|++++++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~-------------~~dlii~d~~l~~~~g~~~~~~l 68 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL-------------KPDIVIIDVDIPGVNGIQVLETL 68 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH-------------CCSEEEEETTCSSSCHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc-------------CCCEEEEecCCCCCChHHHHHHH
Confidence 4799999999999999999999999987 899999999999874 79999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+.+
T Consensus 69 ~~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 117 (134)
T 3f6c_A 69 RKR----QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 117 (134)
T ss_dssp HHT----TCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHH
T ss_pred Hhc----CCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHH
Confidence 975 3578999999999888899999999999999999999999999864
No 78
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.69 E-value=1.5e-16 Score=151.66 Aligned_cols=113 Identities=35% Similarity=0.473 Sum_probs=102.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+|||+||++..+..+...|+..|+.+..+.++++|++.+... +||+||+|+.||+++|++++++||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~-------------~~dlvl~D~~l~~~~g~~~~~~l~ 68 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG-------------NYDLVILDIEMPGISGLEVAGEIR 68 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS-------------CCSEEEECSCCSSSCHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC-------------CCCEEEEECCCCCCCHHHHHHHHH
Confidence 3799999999999999999999999999999999999999863 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+.. +++|||++|+..... .+++++|+++||.||++.++|..+|+++
T Consensus 69 ~~~----~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 69 KKK----KDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKL 114 (116)
T ss_dssp HHC----TTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHH
T ss_pred ccC----CCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHH
Confidence 752 468999999876544 6788999999999999999999999875
No 79
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.68 E-value=4.3e-16 Score=154.87 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=108.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCCCCCCCCCC--CCccEEEEcCCCCCCCHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGA--TVEACENGEAALQLVRSGLNDQRDLGAPHI--LPYDYILMDCEMPIMNGYEA 1073 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~--~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~--~~~DlILmDi~MP~mdG~e~ 1073 (1131)
+.+||||||++..+..+..+|+..|+ .+..+.++.+|++.+....... ... ..||+||+|+.||+++|+++
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~-----~~~~~~~~dlvi~D~~l~~~~g~~~ 80 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYC-----NPDIAPRPAVILLDLNLPGTDGREV 80 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSS-----CGGGCCCCSEEEECSCCSSSCHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhccccc-----CcccCCCCcEEEEECCCCCCCHHHH
Confidence 46899999999999999999999998 8999999999999998521000 000 26999999999999999999
Q ss_pred HHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+++||+... .+++|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 81 ~~~l~~~~~--~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 135 (149)
T 1k66_A 81 LQEIKQDEV--LKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTF 135 (149)
T ss_dssp HHHHTTSTT--GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HHHHHhCcc--cCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 999998531 2468999999999999999999999999999999999999999864
No 80
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.68 E-value=5.2e-16 Score=151.39 Aligned_cols=117 Identities=25% Similarity=0.343 Sum_probs=103.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
+.+||||||++..+..+..+|++.|+.|..+.++.+|++.+.+. +||+||+|+.||+++|++++++|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-------------~~dlii~d~~l~~~~g~~~~~~l 72 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF-------------EPAIMTLDLSMPKLDGLDVIRSL 72 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT-------------CCSEEEEESCBTTBCHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc-------------CCCEEEEecCCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999863 79999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+... ...+|||++|+.... ...+++++|+++||.||++.++|..+|++.
T Consensus 73 ~~~~~--~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 122 (132)
T 3lte_A 73 RQNKV--ANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDL 122 (132)
T ss_dssp HTTTC--SSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHH
T ss_pred HhcCc--cCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHH
Confidence 98632 134667777766555 778999999999999999999999999864
No 81
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.68 E-value=1.2e-16 Score=158.27 Aligned_cols=117 Identities=29% Similarity=0.362 Sum_probs=105.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-CCHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-MNGYEATR 1075 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-mdG~e~~r 1075 (1131)
.+.+||||||++..+..+..+|+..||.|..+.++.+|++.+.+. ..||+||+|+.||+ ++|+++++
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~------------~~~dlvi~D~~l~~~~~g~~~~~ 71 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG------------WYPDLILMDIELGEGMDGVQTAL 71 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT------------CCCSEEEEESSCSSSCCHHHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC------------CCCCEEEEeccCCCCCCHHHHHH
Confidence 346899999999999999999999999999999999999999752 26999999999995 99999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+.+
T Consensus 72 ~l~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 121 (140)
T 3h5i_A 72 AIQQI-----SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMA 121 (140)
T ss_dssp HHHHH-----CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHH
T ss_pred HHHhC-----CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHH
Confidence 99974 368999999998888888999999999999999999999999764
No 82
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.68 E-value=5e-16 Score=155.88 Aligned_cols=117 Identities=23% Similarity=0.345 Sum_probs=107.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGAT--VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~--v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~ 1074 (1131)
.+.+||||||++..+..+..+|+..|+. +..+.++.+|++.+.+. +||+||+|+.||+++|++++
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~-------------~~dlii~d~~l~~~~g~~~~ 80 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH-------------LPDVALLDYRMPGMDGAQVA 80 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH-------------CCSEEEEETTCSSSCHHHHH
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHH
Confidence 4578999999999999999999999854 56899999999999874 79999999999999999999
Q ss_pred HHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1075 RKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1075 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
++||+. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+++
T Consensus 81 ~~l~~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 132 (152)
T 3eul_A 81 AAVRSY----ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDC 132 (152)
T ss_dssp HHHHHT----TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHH
T ss_pred HHHHhc----CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 999975 3578999999999999999999999999999999999999999864
No 83
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.68 E-value=7.5e-16 Score=152.12 Aligned_cols=118 Identities=23% Similarity=0.346 Sum_probs=108.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRH-LGAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~-~g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
..+||||||++..+..+..+|+. .|+. +..+.++.+|++.+... +||+||+|+.||+++|+++++
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~-------------~~dlii~d~~l~~~~g~~~~~ 74 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV-------------KPDVVMLDLMMVGMDGFSICH 74 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT-------------CCSEEEEETTCTTSCHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc-------------CCCEEEEecccCCCcHHHHHH
Confidence 46899999999999999999999 9999 99999999999999873 699999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+.. ..+++|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 75 ~l~~~~--~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 127 (143)
T 3cnb_A 75 RIKSTP--ATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQL 127 (143)
T ss_dssp HHHTST--TTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHhCc--cccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Confidence 999742 24579999999999999999999999999999999999999999864
No 84
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.68 E-value=2.8e-16 Score=172.26 Aligned_cols=116 Identities=28% Similarity=0.436 Sum_probs=107.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
...+||||||++..+..+..+|+..|+.|..+.++.+|++.+... .||+||+|+.||++||++++++
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-------------~~DlvllD~~lp~~~G~~l~~~ 102 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARED-------------HPDLILLDLGLPDFDGGDVVQR 102 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS-------------CCSEEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC-------------CCCEEEEcCCCCCCCHHHHHHH
Confidence 346899999999999999999999999999999999999999863 7999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. +.+|||++|+..+.+...+++++|+++||.||++.++|..+|+.+
T Consensus 103 lr~~-----~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~ 151 (249)
T 3q9s_A 103 LRKN-----SALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQ 151 (249)
T ss_dssp HHTT-----CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHcC-----CCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 9963 368999999999999999999999999999999999999999864
No 85
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.67 E-value=8.9e-17 Score=155.63 Aligned_cols=117 Identities=26% Similarity=0.369 Sum_probs=106.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+.. .+||+||+|+.||+++|++++++||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~-------------~~~dlvi~D~~l~~~~g~~~~~~l~ 69 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-------------PWPDLILLAWMLPGGSGIQFIKHLR 69 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS-------------SCCSEEEEESEETTEEHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc-------------cCCCEEEEecCCCCCCHHHHHHHHH
Confidence 479999999999999999999999999999999999988764 2699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+.. ..+++|||++|+....+...+++++|+++|+.||++.++|..+|+++
T Consensus 70 ~~~--~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~ 119 (127)
T 2jba_A 70 RES--MTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAV 119 (127)
T ss_dssp TST--TTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHH
T ss_pred hCc--ccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Confidence 752 12578999999998888888999999999999999999999998764
No 86
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.67 E-value=6.7e-16 Score=154.90 Aligned_cols=116 Identities=28% Similarity=0.377 Sum_probs=106.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+..+|+. |+.|..+.++.+|++.+.+. .+||+||+|+.||+++|++++++|
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~------------~~~dlvi~D~~l~~~~g~~~~~~l 70 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKS------------DPFSVIMVDMRMPGMEGTEVIQKA 70 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHS------------CCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcC------------CCCCEEEEeCCCCCCcHHHHHHHH
Confidence 36899999999999999999976 99999999999999999863 257999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAG-MDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .+.+|||++|+..+.+...+++++| +++||.||++.++|..+|+.+
T Consensus 71 ~~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~ 120 (151)
T 3kcn_A 71 RLI----SPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAG 120 (151)
T ss_dssp HHH----CSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHH
T ss_pred Hhc----CCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHH
Confidence 975 3578999999999999999999999 999999999999999998764
No 87
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.67 E-value=1.7e-16 Score=168.11 Aligned_cols=116 Identities=28% Similarity=0.347 Sum_probs=106.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+.. .+||+||+|+.||++||++++++|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-------------~~~dlvl~D~~lp~~~g~~~~~~l 70 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP-------------EQHGCLVLDMRMPGMSGIELQEQL 70 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT-------------TSCEEEEEESCCSSSCHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc-------------cCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3589999999999999999999999999999999999998765 269999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .+++|||++|++.+.+...+++++|+++||.||++.++|..+|+.+
T Consensus 71 ~~~----~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~ 119 (208)
T 1yio_A 71 TAI----SDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQG 119 (208)
T ss_dssp HHT----TCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHH
T ss_pred Hhc----CCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 975 3578999999998888888999999999999999999999998764
No 88
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.67 E-value=5.4e-16 Score=165.32 Aligned_cols=115 Identities=30% Similarity=0.398 Sum_probs=105.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLG-ATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g-~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+||||||++..+..+..+|+..| +.+ ..+.++.+|++.+... +||+||+|+.||++||++++++
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~-------------~~dlvllD~~lp~~~g~~~~~~ 72 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL-------------DPDLILLDLNMPGMNGLETLDK 72 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH-------------CCSEEEEETTSTTSCHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc-------------CCCEEEEeCCCCCCcHHHHHHH
Confidence 589999999999999999999874 887 7899999999999874 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+.+|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 73 lr~~----~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~ 122 (215)
T 1a04_A 73 LREK----SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQA 122 (215)
T ss_dssp HHHS----CCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHH
T ss_pred HHHh----CCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Confidence 9975 3578999999999999999999999999999999999999999864
No 89
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.67 E-value=4.3e-16 Score=151.20 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=95.5
Q ss_pred cHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCC
Q 042553 445 DVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGN 524 (1131)
Q Consensus 445 dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~ 524 (1131)
++.+.++++++.+ ..+++.+.++.+.... .....++..|.||+.||++||+||++.|.|.|.+...
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~------- 67 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLS---VVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVE------- 67 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGG---GCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEE-------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccc---cccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeC-------
Confidence 5677788877776 4566666665443321 1123468899999999999999999988888776421
Q ss_pred CCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccch
Q 042553 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGL 604 (1131)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGL 604 (1131)
.. +.|+|+|+|+||+++. +||||
T Consensus 68 ---------------------------------------~~-~~i~v~D~G~gi~~~~-----------------~GlGL 90 (124)
T 3zxq_A 68 ---------------------------------------DD-VRVEVVDDGVGISGDI-----------------TESGL 90 (124)
T ss_dssp ---------------------------------------EE-EEEEEEECCCSSCGGG-----------------SHHHH
T ss_pred ---------------------------------------CC-EEEEEEECCCCCCccc-----------------cccCH
Confidence 12 7899999999999886 39999
Q ss_pred HHHHHHHHHhCCEEEEEeecCCCccEEEEEEEecc
Q 042553 605 GIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLA 639 (1131)
Q Consensus 605 sIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~ 639 (1131)
+|||++++.|||++++.+.++ .|++|++.+|+.
T Consensus 91 ~~~~~~~~~~gG~i~~~~~~~--~G~~~~i~lP~~ 123 (124)
T 3zxq_A 91 RNLRQRADDAGGEFTVENMPT--GGTLLRWSAPLR 123 (124)
T ss_dssp HHHHHHHHHHTCEEEEEECTT--SSEEEEEEEECC
T ss_pred HHHHHHHHHhCCEEEEEEcCC--CcEEEEEEEecC
Confidence 999999999999999988653 599999999864
No 90
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.67 E-value=9.6e-16 Score=154.16 Aligned_cols=117 Identities=14% Similarity=0.263 Sum_probs=108.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
++.+||||||++..+..+..+|+..|+.|..+.++.+|++.+... +||+||+|+.||+++|+++++.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-------------~~dlvi~d~~l~~~~g~~~~~~ 72 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT-------------SVQLVISDMRMPEMGGEVFLEQ 72 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTS-------------CCSEEEEESSCSSSCHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-------------CCCEEEEecCCCCCCHHHHHHH
Confidence 457899999999999999999999999999999999999999763 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAG-MDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG-~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+.+|||++|+....+...+++++| +++||.||++.++|..+|+.+
T Consensus 73 l~~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~ 123 (154)
T 2rjn_A 73 VAKS----YPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKG 123 (154)
T ss_dssp HHHH----CTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHh----CCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHH
Confidence 9985 3478999999999888999999998 999999999999999998764
No 91
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.67 E-value=4.6e-16 Score=154.90 Aligned_cols=118 Identities=20% Similarity=0.346 Sum_probs=108.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+...|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-------------~~dlii~d~~l~~~~g~~~~~~l 74 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT-------------HPHLIITEANMPKISGMDLFNSL 74 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH-------------CCSEEEEESCCSSSCHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC-------------CCCEEEEcCCCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999874 69999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+.. ..+++|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 75 ~~~~--~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~ 125 (147)
T 2zay_A 75 KKNP--QTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRV 125 (147)
T ss_dssp HTST--TTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred HcCc--ccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Confidence 9732 24579999999999999999999999999999999999999998764
No 92
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.66 E-value=7.4e-16 Score=152.47 Aligned_cols=115 Identities=23% Similarity=0.292 Sum_probs=106.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+... .||+||+|+ ||+++|++++++|
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-------------~~dlvi~d~-~~~~~g~~~~~~l 69 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE-------------KIDLVFVDV-FEGEESLNLIRRI 69 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS-------------CCSEEEEEC-TTTHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc-------------CCCEEEEeC-CCCCcHHHHHHHH
Confidence 35899999999999999999999999999999999999999763 799999999 9999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .+.+|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 70 ~~~----~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 118 (142)
T 2qxy_A 70 REE----FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKI 118 (142)
T ss_dssp HHH----CTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHH
T ss_pred HHH----CCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHH
Confidence 975 3479999999999999999999999999999999999999999764
No 93
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.66 E-value=1.1e-15 Score=150.38 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=107.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-----CCCHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-----IMNGYE 1072 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-----~mdG~e 1072 (1131)
..+||||||++..+..+..+|+..|+.|..+.++.+|++.+... .||+||+|+.|| +++|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-------------~~dlvi~d~~~~~~~~~~~~g~~ 69 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE-------------NPEVVLLDMNFTSGINNGNEGLF 69 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS-------------CEEEEEEETTTTC-----CCHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC-------------CCCEEEEeCCcCCCCCCCccHHH
Confidence 35899999999999999999999999999999999999999873 699999999999 999999
Q ss_pred HHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1073 ATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1073 ~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
++++||+. .+++|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 70 ~~~~l~~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 123 (140)
T 2qr3_A 70 WLHEIKRQ----YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNA 123 (140)
T ss_dssp HHHHHHHH----CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHhh----CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHH
Confidence 99999975 3578999999999889999999999999999999999999999864
No 94
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.66 E-value=1.3e-15 Score=150.08 Aligned_cols=116 Identities=23% Similarity=0.307 Sum_probs=107.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-CCCHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-IMNGYEAT 1074 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-~mdG~e~~ 1074 (1131)
...+||||||++..+..+..+|+..||.+. .+.++.+|++.+.+. +||+||+|+.|| +++|++++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~-------------~~dlii~d~~~~~~~~g~~~~ 74 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL-------------RPDIALVDIMLCGALDGVETA 74 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH-------------CCSEEEEESSCCSSSCHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC-------------CCCEEEEecCCCCCCCHHHHH
Confidence 356899999999999999999999999999 599999999999874 699999999999 79999999
Q ss_pred HHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1075 RKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1075 r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+.||+. +.+|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 75 ~~l~~~-----~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 125 (140)
T 3cg0_A 75 ARLAAG-----CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMA 125 (140)
T ss_dssp HHHHHH-----SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHhC-----CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHH
Confidence 999985 368999999999999999999999999999999999999999764
No 95
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.66 E-value=1e-15 Score=151.10 Aligned_cols=114 Identities=21% Similarity=0.262 Sum_probs=102.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+.. +.+..+.++.+|++.+... .||+||+|+.||+++|++++++||
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~-------------~~dlvl~D~~lp~~~g~~~~~~l~ 67 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEE-------------WVQVIICDQRMPGRTGVDFLTEVR 67 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHS-------------CEEEEEEESCCSSSCHHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcC-------------CCCEEEEeCCCCCCcHHHHHHHHH
Confidence 37999999999999999999875 9999999999999999863 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHc-CCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEA-GMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~a-G~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .+++|||++|+..+.+...+++.. |+++||.||++.++|..+|+++
T Consensus 68 ~~----~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 116 (139)
T 2jk1_A 68 ER----WPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNA 116 (139)
T ss_dssp HH----CTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred Hh----CCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHH
Confidence 75 346899999999887787888876 5999999999999999998764
No 96
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.66 E-value=2.8e-16 Score=155.29 Aligned_cols=117 Identities=24% Similarity=0.272 Sum_probs=97.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+..+|+.. +.|..+.++.+|++.+.+. +||+||+|+.||+++|++++++|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~-------------~~dlvi~D~~l~~~~g~~~~~~l 68 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH-------------HPDLVILDMDIIGENSPNLCLKL 68 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH-------------CCSEEEEETTC------CHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC-------------CCCEEEEeCCCCCCcHHHHHHHH
Confidence 358999999999999999999988 9999999999999999874 79999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+... .+.+|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 69 ~~~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 119 (140)
T 3n53_A 69 KRSKG--LKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIH 119 (140)
T ss_dssp HTSTT--CTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHH
T ss_pred HcCcc--cCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHH
Confidence 98531 2578999999998888888999999999999999999999999864
No 97
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.65 E-value=7.4e-16 Score=165.21 Aligned_cols=115 Identities=28% Similarity=0.489 Sum_probs=107.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+... +||+||+|+.||+++|++++++||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-------------~~dlvllD~~l~~~~g~~~~~~lr 69 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNE-------------PFDVVILDIMLPVHDGWEILKSMR 69 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS-------------CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999999999863 799999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .+++|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 70 ~~----~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~ 117 (225)
T 1kgs_A 70 ES----GVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRAL 117 (225)
T ss_dssp HT----TCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHH
T ss_pred hc----CCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHH
Confidence 75 3578999999999888999999999999999999999999999764
No 98
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.65 E-value=3.2e-16 Score=155.64 Aligned_cols=115 Identities=23% Similarity=0.308 Sum_probs=97.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHH--hCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLR--HLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~--~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
.+||||||++..+..+...|. ..|+.+. .+.++.+|++.+... +||+||+|+.||+++|+++++
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~-------------~~dlvllD~~lp~~~g~~l~~ 69 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKH-------------PPNVLLTDVRMPRMDGIELVD 69 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTS-------------CCSEEEEESCCSSSCHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcC-------------CCCEEEEeCCCCCCCHHHHHH
Confidence 479999999999999999997 3688777 899999999998753 699999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+. .+.+|||++|+....+...+++++|+++||.||++.++|..+|+++
T Consensus 70 ~l~~~----~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 120 (141)
T 3cu5_A 70 NILKL----YPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQS 120 (141)
T ss_dssp HHHHH----CTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHH
T ss_pred HHHhh----CCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHH
Confidence 99975 3478999999998887888999999999999999999999998764
No 99
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.65 E-value=8.1e-16 Score=183.65 Aligned_cols=117 Identities=29% Similarity=0.428 Sum_probs=108.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..|+.|..|.+|.+|++.+... +||+||+|+.||+|||++++++||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~-------------~~dlvllD~~mp~~~G~~~~~~l~ 68 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD-------------LPDIILLDVMMPGMDGFTVCRKLK 68 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH-------------CCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC-------------CCCEEEEcCCCCCCCHHHHHHHHh
Confidence 4799999999999999999999999999999999999999864 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+... .+++|||++|++.+.+...+++++|+++||.||++.++|..+|+++
T Consensus 69 ~~~~--~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~ 118 (459)
T 1w25_A 69 DDPT--TRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSL 118 (459)
T ss_dssp HSTT--TTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHH
T ss_pred cCcc--cCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 7532 3479999999999999999999999999999999999999988764
No 100
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.65 E-value=1.2e-15 Score=153.49 Aligned_cols=116 Identities=25% Similarity=0.335 Sum_probs=106.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
+.+||||||++..+..+..+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-------------~~dliild~~l~~~~g~~~~~~l 69 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD-------------FAGIVISDIRMPGMDGLALFRKI 69 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTT-------------CCSEEEEESCCSSSCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhC-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 35899999999999999999999999999999999999988652 69999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .+.+|||++|+....+....++++|+++||.||++.++|..+|+.+
T Consensus 70 ~~~----~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 118 (155)
T 1qkk_A 70 LAL----DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRA 118 (155)
T ss_dssp HHH----CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred Hhh----CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Confidence 975 3479999999999988999999999999999999999999998764
No 101
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.65 E-value=1.5e-15 Score=152.56 Aligned_cols=116 Identities=28% Similarity=0.331 Sum_probs=107.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRH-LGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~-~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
..+||||||++..+..+..+|+. .|+.+. .+.++.+|++.+... .||+||+|+.||+++|+++++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~-------------~~dlii~D~~l~~~~g~~~~~ 71 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRET-------------TPDIVVMDLTLPGPGGIEATR 71 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTT-------------CCSEEEECSCCSSSCHHHHHH
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcC-------------CCCEEEEecCCCCCCHHHHHH
Confidence 46899999999999999999998 799988 899999999999863 699999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+. .+.+|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 72 ~l~~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~ 122 (153)
T 3cz5_A 72 HIRQW----DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAI 122 (153)
T ss_dssp HHHHH----CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHH
T ss_pred HHHHh----CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHH
Confidence 99986 3468999999999999999999999999999999999999999875
No 102
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.65 E-value=3.9e-16 Score=154.36 Aligned_cols=119 Identities=21% Similarity=0.385 Sum_probs=108.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
...+||||||++..+..+..+|+..||.|..+.++++|++.+... .||+||+|+.||+++|++++++
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-------------~~dlii~d~~l~~~~g~~~~~~ 72 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG-------------FSGVVLLDIMMPGMDGWDTIRA 72 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC-------------CCEEEEEESCCSSSCHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHHHH
Confidence 346899999999999999999999999999999999999999863 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+.. ..+.+|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 73 l~~~~--~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 124 (142)
T 3cg4_A 73 ILDNS--LEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFF 124 (142)
T ss_dssp HHHTT--CCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHH
T ss_pred HHhhc--ccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHH
Confidence 99842 24579999999998888888899999999999999999999998764
No 103
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.65 E-value=3.6e-16 Score=183.06 Aligned_cols=114 Identities=27% Similarity=0.371 Sum_probs=102.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++.++..++.+|++.||.|..+.+|++|++.+.+. +||+||+|++||+|||++++++||
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-------------~~dlvllD~~mp~~~G~~~~~~lr 72 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESE-------------QPDLVICDLRMPQIDGLELIRRIR 72 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHS-------------CCSEEEECCCSSSSCTHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhC-------------CCCEEEEcCCCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999873 799999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHH
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL-NRDHLMEAIKY 1129 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~-~~~~L~~~I~~ 1129 (1131)
+. .+++|||++|++.+.+...+|+++|+++||.||+ +.++|..+|++
T Consensus 73 ~~----~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~ 120 (394)
T 3eq2_A 73 QT----ASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRR 120 (394)
T ss_dssp HT----TCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHH
T ss_pred hh----CCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHH
Confidence 75 3579999999999999999999999999999999 68888877764
No 104
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.64 E-value=8.8e-16 Score=162.52 Aligned_cols=114 Identities=27% Similarity=0.443 Sum_probs=105.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
.+||||||++..+..+..+|+..||.+. .+.++.+|++.+... +||+||+|+.||++||+++++.|
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~-------------~~dlvi~D~~~p~~~g~~~~~~l 80 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH-------------KPDLVIMDVKMPRRDGIDAASEI 80 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-------------CCSEEEEESSCSSSCHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc-------------CCCEEEEeCCCCCCChHHHHHHH
Confidence 5899999999999999999999999988 899999999999874 69999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+.. ..|||++|++...+...+++++|+++||.||++.++|..+|+.+
T Consensus 81 ~~~~-----~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 128 (205)
T 1s8n_A 81 ASKR-----IAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELA 128 (205)
T ss_dssp HHTT-----CSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHH
T ss_pred HhcC-----CCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Confidence 9752 34999999999999999999999999999999999999988754
No 105
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.64 E-value=1.9e-15 Score=149.60 Aligned_cols=123 Identities=21% Similarity=0.309 Sum_probs=107.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGA--TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~--~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
..+||||||++..+..+...|+..|+ .|..+.++.+|++.++.... .....||+||+|+.||+++|+++++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~-------~~~~~~dlii~D~~l~~~~g~~~~~ 79 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNK-------ENKIHPKLILLDINIPKMNGIEFLK 79 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTT-------CCCCCCSEEEEETTCTTSCHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhccc-------ccCCCCCEEEEecCCCCCCHHHHHH
Confidence 35799999999999999999999998 99999999999999985100 0013699999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
+||+... .+++|||++|+....+...+++++|+++||.||++.++|.+++..
T Consensus 80 ~l~~~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 80 ELRDDSS--FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp HHTTSGG--GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred HHHcCcc--ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 9997531 247899999999999999999999999999999999999998764
No 106
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.64 E-value=1.2e-15 Score=178.13 Aligned_cols=114 Identities=26% Similarity=0.383 Sum_probs=106.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||||||++..+..+..+|+..||.|..|.++.+|++.+... .||+||+|+.||+|||++++++||+
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~-------------~~DlvllD~~mp~~dG~ell~~lr~ 68 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK-------------HFNVVLLDLLLPDVNGLEILKWIKE 68 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHS-------------CCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC-------------CCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 699999999999999999999999999999999999999863 6999999999999999999999997
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
. .+++|||++|++.+.+...+++++|+++||.||++.++|..+|+++
T Consensus 69 ~----~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~ 115 (387)
T 1ny5_A 69 R----SPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKA 115 (387)
T ss_dssp H----CTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHH
T ss_pred h----CCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHH
Confidence 5 3579999999999999999999999999999999999999988764
No 107
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.63 E-value=8.8e-16 Score=165.56 Aligned_cols=116 Identities=28% Similarity=0.405 Sum_probs=107.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+..+|+..|+.|..+.++.+|++.+... +||+||+|+.||+++|+++++.|
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-------------~~dlvllD~~l~~~~g~~~~~~l 73 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN-------------RPDAIVLDINMPVLDGVSVVTAL 73 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS-------------CCSEEEEESSCSSSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhC-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 35899999999999999999999999999999999999999863 79999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .+++|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 74 ~~~----~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~ 122 (233)
T 1ys7_A 74 RAM----DNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKAL 122 (233)
T ss_dssp HHT----TCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHH
T ss_pred Hhc----CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 975 3478999999998888888999999999999999999999999864
No 108
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.63 E-value=6.6e-16 Score=150.95 Aligned_cols=115 Identities=23% Similarity=0.305 Sum_probs=103.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
..+||||||++..+..+..+|+..++.+..+.++++|++.+.. . ||+||+|+.||+++|++++++|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-------------~-~dlvi~D~~l~~~~g~~~~~~l 68 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN-------------K-QDIIILDLMMPDMDGIEVIRHL 68 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC-------------T-TEEEEEECCTTTTHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc-------------C-CCEEEEeCCCCCCCHHHHHHHH
Confidence 3689999999999999999999999899999999999887653 3 9999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCH-----HHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISG-----EEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~-----~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+. .+.+|||++|+.... +...+++++|+++||.||++.++|..+|+++
T Consensus 69 ~~~----~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~ 122 (135)
T 3eqz_A 69 AEH----KSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSL 122 (135)
T ss_dssp HHT----TCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHH
T ss_pred HhC----CCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHH
Confidence 975 357899999998875 6667789999999999999999999999876
No 109
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.63 E-value=2.1e-15 Score=145.32 Aligned_cols=116 Identities=23% Similarity=0.434 Sum_probs=106.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-CCCHHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-IMNGYEATRKI 1077 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-~mdG~e~~r~I 1077 (1131)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+... +||+||+|+.|| +++|++++++|
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-------------~~dlvi~d~~~~~~~~g~~~~~~l 72 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD-------------RPDLVVLAVDLSAGQNGYLICGKL 72 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH-------------CCSEEEEESBCGGGCBHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCCHHHHHHHH
Confidence 4899999999999999999999999999999999999999874 699999999999 99999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+... .+++|||++ +....+...+++++|+++|+.||++.++|..+|+.+
T Consensus 73 ~~~~~--~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 122 (127)
T 2gkg_A 73 KKDDD--LKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGAL 122 (127)
T ss_dssp HHSTT--TTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHH
T ss_pred hcCcc--ccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHH
Confidence 98531 357899999 887788888999999999999999999999999864
No 110
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.61 E-value=1.1e-14 Score=143.29 Aligned_cols=113 Identities=20% Similarity=0.267 Sum_probs=104.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 996 ~~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
..+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+... .||+|| ||+++|+++++
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-------------~~dlvi----~~~~~g~~~~~ 78 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR-------------NYDLVM----VSDKNALSFVS 78 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS-------------CCSEEE----ECSTTHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC-------------CCCEEE----EcCccHHHHHH
Confidence 4567999999999999999999999999999999999999999863 699999 99999999999
Q ss_pred HHhhhhccCCC-CccEEEEcccCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQV-HIPIIALTAHISGEEADKTIEAGMDVHLGKPL-NRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~-~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~-~~~~L~~~I~~l 1130 (1131)
+||+. + .+|||++|+....+...+++++|+++||.||+ +.++|..+|+.+
T Consensus 79 ~l~~~-----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~ 130 (137)
T 2pln_A 79 RIKEK-----HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEAR 130 (137)
T ss_dssp HHHHH-----STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHH
T ss_pred HHHhc-----CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHH
Confidence 99975 3 68999999999999999999999999999999 999999999875
No 111
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.61 E-value=2.1e-15 Score=149.10 Aligned_cols=116 Identities=33% Similarity=0.490 Sum_probs=100.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..|+.+..+.++.+|++.+... .||+||+|+.||++||++++++||
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~-------------~~dlvllD~~lp~~~g~~~~~~l~ 77 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNR-------------QFDVIIMDIQMPVMDGLEAVSEIR 77 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHS-------------CCSEEEECTTCCSSCHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcC-------------CCCEEEEeCCCCCCcHHHHHHHHH
Confidence 4899999999999999999999999999999999999999863 699999999999999999999999
Q ss_pred hhhc-cCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEK-RNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~-~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+... ...+.+|||++|+........ ++|+++||.||++.++|..+|+++
T Consensus 78 ~~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~ 127 (140)
T 3c97_A 78 NYERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTC 127 (140)
T ss_dssp HHHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHH
T ss_pred hhhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHH
Confidence 7531 113468999999876544332 789999999999999999999864
No 112
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.61 E-value=2.3e-15 Score=163.34 Aligned_cols=114 Identities=31% Similarity=0.443 Sum_probs=106.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+... .||+||+|+.||+++|+++++.||
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-------------~~dlvilD~~l~~~~g~~~~~~lr 72 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL-------------RPDLVLLDLMLPGMNGIDVCRVLR 72 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHH-------------CCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC-------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4899999999999999999999999999999999999999864 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. ..+|||++|+..+.+...+++++|+++||.||++.++|..+|+.+
T Consensus 73 ~~-----~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~ 119 (238)
T 2gwr_A 73 AD-----SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRAR 119 (238)
T ss_dssp TT-----CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHH
T ss_pred hC-----CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 74 268999999998888889999999999999999999999999875
No 113
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.61 E-value=1.3e-15 Score=151.54 Aligned_cols=117 Identities=26% Similarity=0.389 Sum_probs=98.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHL-GATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~-g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~ 1074 (1131)
...+||||||++..+..++.+|++. |+.+. .+.++.+|++.+.+. ..||+||+|+.||+++|++++
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~------------~~~dlvilD~~l~~~~g~~~~ 79 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQ------------PNVDLILLDIEMPVMDGMEFL 79 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHC------------TTCCEEEECTTSCCCTTCHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcC------------CCCCEEEEeCCCCCCCHHHHH
Confidence 4568999999999999999999998 88864 899999999999862 159999999999999999999
Q ss_pred HHHhhhhccCCCCccEEEEcc--cCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHh
Q 042553 1075 RKIREEEKRNQVHIPIIALTA--HISGEEADKTIEAGMDVHLGKPLN----------RDHLMEAIKYL 1130 (1131)
Q Consensus 1075 r~IR~~~~~~~~~ipIIalTa--~~~~~~~~~~l~aG~d~yL~KP~~----------~~~L~~~I~~l 1130 (1131)
++||+.. ..|||++|+ ....+...+++++|+++||.||++ ..+|..+++++
T Consensus 80 ~~lr~~~-----~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~l~~~i~~~ 142 (145)
T 3kyj_B 80 RHAKLKT-----RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEKTGGELARTMRTL 142 (145)
T ss_dssp HHHHHHC-----CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------CTTHHHHHHHHHH
T ss_pred HHHHhcC-----CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999752 378999987 555667789999999999999999 55566665543
No 114
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.60 E-value=2.4e-15 Score=173.39 Aligned_cols=116 Identities=23% Similarity=0.306 Sum_probs=105.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLR-HLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~-~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
.+||||||++..+..+..+|. ..|+.|..|.||.+|++.+... .||+||+|+.||+|||++++++|
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~-------------~~dlvl~D~~mp~~~G~~~~~~l 85 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI-------------KPTVILQDLVMPGVDGLTLLAAY 85 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH-------------CCSEEEEESBCSSSBHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC-------------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 469999999999999999996 4689999999999999999864 69999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
|+.. ..+++|||++|+..+.+...+++++|+++||.||++.++|..+++.
T Consensus 86 ~~~~--~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~ 135 (358)
T 3bre_A 86 RGNP--ATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRY 135 (358)
T ss_dssp TTST--TTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHH
T ss_pred hcCc--ccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHH
Confidence 9753 2347999999999999999999999999999999999999988875
No 115
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.60 E-value=3.2e-15 Score=160.93 Aligned_cols=114 Identities=25% Similarity=0.378 Sum_probs=106.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+... .||+||+|+.||+++|++++++||
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~-------------~~dlvllD~~l~~~~g~~~~~~l~ 71 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA-------------GADIVLLDLMLPGMSGTDVCKQLR 71 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH-------------CCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc-------------CCCEEEEECCCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999864 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. +++|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 72 ~~-----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~ 118 (230)
T 2oqr_A 72 AR-----SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAV 118 (230)
T ss_dssp HH-----CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHH
T ss_pred cC-----CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 74 368999999998888889999999999999999999999999864
No 116
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.60 E-value=4.6e-15 Score=140.67 Aligned_cols=114 Identities=21% Similarity=0.202 Sum_probs=103.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+|||+||++..+..+...|+..|+.+..+.++++|++.+... +||+||+|+.||+++|+++++++|
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~-------------~~dlii~d~~~~~~~~~~~~~~l~ 68 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL-------------QPIVILMAWPPPDQSCLLLLQHLR 68 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH-------------CCSEEEEECSTTCCTHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc-------------CCCEEEEecCCCCCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999874 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+... .+.+|||++|+....+ .++++|+++|+.||++.++|..+|+.+
T Consensus 69 ~~~~--~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 69 EHQA--DPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp HTCC--CSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTT
T ss_pred hccc--cCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHH
Confidence 8631 2478999999987665 899999999999999999999999875
No 117
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.60 E-value=8.3e-15 Score=145.04 Aligned_cols=114 Identities=18% Similarity=0.274 Sum_probs=100.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHL-GAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~-g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
..+||||||++..+..+...|+.. |+. +..+.++.+|++.+... .||+||+|+.||+++|+++++
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-------------~~dlvi~d~~l~~~~g~~~~~ 75 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN-------------KVDAIFLDINIPSLDGVLLAQ 75 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC-------------CCSEEEECSSCSSSCHHHHHH
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------------CCCEEEEecCCCCCCHHHHHH
Confidence 468999999999999999999876 888 45899999999999873 699999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+. .+.+|||++|+.. +...+++++|+++||.||++.++|..+|+++
T Consensus 76 ~l~~~----~~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 124 (143)
T 2qv0_A 76 NISQF----AHKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKL 124 (143)
T ss_dssp HHTTS----TTCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHcc----CCCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHH
Confidence 99974 2357899999874 3567899999999999999999999999764
No 118
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.60 E-value=1e-14 Score=142.06 Aligned_cols=116 Identities=28% Similarity=0.419 Sum_probs=103.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-CCHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-MNGYEATR 1075 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-mdG~e~~r 1075 (1131)
...+||||||++..+..+...|+..|+.+..+.++.+|++.+.+. ..||+||+|+.||+ ++|+++++
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~------------~~~dlvi~d~~l~~~~~g~~~~~ 71 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG------------AAIDGVVTDIRFCQPPDGWQVAR 71 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT------------CCCCEEEEESCCSSSSCHHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC------------CCCCEEEEeeeCCCCCCHHHHHH
Confidence 346899999999999999999999999999999999999999862 16999999999997 99999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+. .+++|||++|+....+...+++++| +||.||++.++|..+|+++
T Consensus 72 ~l~~~----~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~ 120 (132)
T 2rdm_A 72 VAREI----DPNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQL 120 (132)
T ss_dssp HHHHH----CTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHH
T ss_pred HHHhc----CCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHH
Confidence 99986 3478999999998887777777776 7999999999999999864
No 119
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.59 E-value=3.1e-15 Score=150.30 Aligned_cols=116 Identities=21% Similarity=0.312 Sum_probs=95.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHL-GA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~-g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+||||||++..+..+..+|+.. |+ .+..+.++.+|++.+... .+||+||+|+.||+++|++++++
T Consensus 4 ~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~------------~~~dlvi~d~~l~~~~g~~~~~~ 71 (154)
T 2qsj_A 4 TVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD------------NTVDLILLDVNLPDAEAIDGLVR 71 (154)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT------------CCCSEEEECC------CHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc------------CCCCEEEEeCCCCCCchHHHHHH
Confidence 57999999999999999999987 88 788999999999999861 26999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+.+|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 72 l~~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~ 121 (154)
T 2qsj_A 72 LKRF----DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLI 121 (154)
T ss_dssp HHHH----CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHH
T ss_pred HHHh----CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHH
Confidence 9986 3478999999998888889999999999999999999999999764
No 120
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.59 E-value=1.2e-14 Score=148.39 Aligned_cols=115 Identities=25% Similarity=0.288 Sum_probs=100.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCC-CE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLG-AT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g-~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
..+||||||++..+..+..+|+..| +. +..+.++.+|++.+.+. .||+||+|+.||+++|+++++
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-------------~~dlvilD~~l~~~~g~~l~~ 91 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL-------------KPDVITMDIEMPNLNGIEALK 91 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-------------CCSEEEECSSCSSSCHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC-------------CCCEEEEeCCCCCCCHHHHHH
Confidence 4689999999999999999999875 33 55799999999999874 699999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHH--HHHHHHHcCCCEEEECCCC---------HHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGE--EADKTIEAGMDVHLGKPLN---------RDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~--~~~~~l~aG~d~yL~KP~~---------~~~L~~~I~~l 1130 (1131)
+||+.. + +|||++|+....+ ...+++++|+++||.||++ .++|.++|+++
T Consensus 92 ~lr~~~----~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~ 152 (164)
T 3t8y_A 92 LIMKKA----P-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQA 152 (164)
T ss_dssp HHHHHS----C-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHH
T ss_pred HHHhcC----C-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHH
Confidence 999852 3 7999999976643 6678999999999999999 78888888764
No 121
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.59 E-value=6.9e-15 Score=157.29 Aligned_cols=112 Identities=30% Similarity=0.407 Sum_probs=103.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+||||||++..+..+..+|+..| .|..+.++.+|++.+ . .||+||+|+.||+++|++++++||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~-~--------------~~dlvllD~~lp~~~g~~~~~~lr 66 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE-E--------------AFHVVVLDVMLPDYSGYEICRMIK 66 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC-S--------------CCSEEEEESBCSSSBHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc-C--------------CCCEEEEeCCCCCCCHHHHHHHHH
Confidence 379999999999999999999999 999999999999876 2 699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+.. +++|||++|+....+...+++++|+++||.||++.++|..+|+.+
T Consensus 67 ~~~----~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~ 114 (220)
T 1p2f_A 67 ETR----PETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRF 114 (220)
T ss_dssp HHC----TTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred hcC----CCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 862 478999999999999999999999999999999999999999864
No 122
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.58 E-value=4.7e-15 Score=148.26 Aligned_cols=102 Identities=18% Similarity=0.322 Sum_probs=80.8
Q ss_pred eCHHHHHHHHHHHHHHHhhccCC----CeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhc
Q 042553 485 GDRVKLKQILSNLLSNAVKFTSE----GHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQR 560 (1131)
Q Consensus 485 gD~~rL~QIL~NLL~NAiKfT~~----G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1131)
.|...+.+++.||+.||+||+.. |.|.|.+...
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~------------------------------------------- 71 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE------------------------------------------- 71 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE-------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe-------------------------------------------
Confidence 48889999999999999999965 6777766432
Q ss_pred cCCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 561 DENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 561 ~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
...+.|+|.|+|+||+ .++++|++|++.+....|+||||+|||++++ +|.+.+.. +.||+|++.+|+..
T Consensus 72 ---~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~~~~~GlGL~iv~~~~~----~i~~~~~~--~~Gt~v~~~lp~~~ 140 (145)
T 1th8_A 72 ---DGVVHLTVRDEGVGIP--DIEEARQPLFTTKPELERSGMGFTIMENFMD----EVIVESEV--NKGTTVYLKKHGIH 140 (145)
T ss_dssp ---TTEEEEEEEECSSCCS--CHHHHTCCC-------CCCSCHHHHHHHHSS----EEEEEEET--TTEEEEEEEECCC-
T ss_pred ---CCEEEEEEEECCCCcC--hHHHhhcccccCCCCCCCCcchHHHHHHHHh----eEEEEeCC--CCCEEEEEEEeccc
Confidence 1258899999999999 8999999999987656799999999999998 89998865 36999999998753
No 123
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.58 E-value=1.2e-15 Score=164.19 Aligned_cols=115 Identities=23% Similarity=0.209 Sum_probs=105.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLG-ATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g-~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+||||||++..+..+..+|+..| +.+ ..+.++.+|++.+... +||+||+|+.||++||++++++
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~-------------~~dlvllD~~lp~~~g~~~~~~ 68 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA-------------RPDVAVLDVRLPDGNGIELCRD 68 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH-------------CCSEEEECSEETTEEHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc-------------CCCEEEEeCCCCCCCHHHHHHH
Confidence 379999999999999999999887 884 5799999999999864 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
||+. .+.+|||++|+..+.+...+++++|+++||.||++.++|..+|+.+
T Consensus 69 lr~~----~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~ 118 (225)
T 3c3w_A 69 LLSR----MPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDV 118 (225)
T ss_dssp HHHH----CTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHh----CCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 9975 3579999999999999999999999999999999999999999764
No 124
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.58 E-value=1.2e-15 Score=164.12 Aligned_cols=116 Identities=9% Similarity=-0.038 Sum_probs=100.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHh-CCCEEEE-ECCHHHHHHH-HHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRH-LGATVEA-CENGEAALQL-VRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATR 1075 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~-~g~~v~~-a~ng~eAl~~-~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r 1075 (1131)
.+||||||++..+..++.+|+. .|+.+.. +.++.+++.. +.. .+||+||+|++||+|||+++++
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~-------------~~~dlvllD~~mp~~~G~~~~~ 74 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES-------------RSIQMLVIDYSRISDDVLTDYS 74 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG-------------GGCCEEEEEGGGCCHHHHHHHH
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc-------------cCCCEEEEeCCCCCCCHHHHHH
Confidence 5899999999999999999984 6888854 5677776654 443 3699999999999999999999
Q ss_pred HHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1076 KIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1076 ~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+||+.. .+++|||++|++.+.+....++++|+++||.||++.++|..+|+.+
T Consensus 75 ~lr~~~---~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~ 126 (225)
T 3klo_A 75 SFKHIS---CPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKI 126 (225)
T ss_dssp HHHHHH---CTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHH
T ss_pred HHHHhh---CCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHH
Confidence 999721 3579999999999888888999999999999999999999999864
No 125
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.57 E-value=5.1e-15 Score=145.79 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=99.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-cCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHH
Q 042553 996 LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRS-GLNDQRDLGAPHILPYDYILMDCEMPIMNGYEAT 1074 (1131)
Q Consensus 996 ~~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~-~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~ 1074 (1131)
..+.+||||||++..+..+..+|+..|+.|..+.++.+|++.+.. . .||+||+|+.||+++|++++
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~-------------~~dlvilD~~l~~~~g~~~~ 79 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLS-------------TCDLLIVSDQLVDLSIFSLL 79 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGG-------------SCSEEEEETTCTTSCHHHHH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCC-------------CCCEEEEeCCCCCCCHHHHH
Confidence 356789999999999999999999999999999999999998875 4 69999999999999999999
Q ss_pred HHHhhhhccCCCCccEEEEc-ccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1075 RKIREEEKRNQVHIPIIALT-AHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1075 r~IR~~~~~~~~~ipIIalT-a~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
++||+. .+++|||++| +....+. .+++ +++||.||++.++|..+|+.+
T Consensus 80 ~~l~~~----~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~ 128 (138)
T 2b4a_A 80 DIVKEQ----TKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYH 128 (138)
T ss_dssp HHHTTS----SSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHT
T ss_pred HHHHhh----CCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHH
Confidence 999973 3579999999 8766555 5565 999999999999999999875
No 126
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.57 E-value=3.5e-15 Score=175.11 Aligned_cols=116 Identities=18% Similarity=0.201 Sum_probs=102.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRH-LGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~-~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
.+||||||++..+..+..+|+. .|+.|..|.||++|++.+... ..||+||+|++||+|||++++++|
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~------------~~~DlvllDi~mP~~dG~ell~~l 71 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC------------GHVDIAICDLQMSGMDGLAFLRHA 71 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH------------SCEEEEEECSSCSSSCHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC------------CCCCEEEEeCCCCCCCHHHHHHHH
Confidence 5899999999999999999998 678999999999999999762 169999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCH-----HHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISG-----EEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~-----~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
|+.. +.+|||++|+.... ....+|+++|+++||.||++.++|..+|+++
T Consensus 72 ~~~~----~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~ 125 (400)
T 3sy8_A 72 SLSG----KVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRY 125 (400)
T ss_dssp HHHT----CEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHH
T ss_pred HhcC----CCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHH
Confidence 9763 35678877877665 5677889999999999999999999998764
No 127
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.57 E-value=6.7e-15 Score=174.38 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=91.3
Q ss_pred EEeCHHHHHHHHHHHHHHHhhccCCC----eEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhh
Q 042553 483 VKGDRVKLKQILSNLLSNAVKFTSEG----HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAA 558 (1131)
Q Consensus 483 v~gD~~rL~QIL~NLL~NAiKfT~~G----~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1131)
+.+|+.+|.|||.|||+||+||+..| .|.|.+....
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~---------------------------------------- 65 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLID---------------------------------------- 65 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEE----------------------------------------
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECC----------------------------------------
Confidence 45688999999999999999999875 5776653210
Q ss_pred hccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC-----CCCCcccchHHHHHHHHHhCCE-EEEEeecCCCccE-E
Q 042553 559 QRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE-----GEGGTGLGLGIVQSLVRLMGGD-IEIVDKENGERGT-C 631 (1131)
Q Consensus 559 ~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~-----~~~GtGLGLsIvk~Lv~~~gG~-I~v~s~~~gg~Gt-~ 631 (1131)
.....+.|+|.|+|+||++++++++|++|++.+. ..+|+||||+||+.++++|||+ |++.|..++ |+ +
T Consensus 66 ---~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~--g~~~ 140 (471)
T 1mu5_A 66 ---DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVN--SKRI 140 (471)
T ss_dssp ---TTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTT--CSEE
T ss_pred ---CcCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCC--CceE
Confidence 0113578999999999999999999999987654 3479999999999999999999 999998653 54 7
Q ss_pred EEEEEeccc
Q 042553 632 FRFNVFLAI 640 (1131)
Q Consensus 632 f~~~l~l~~ 640 (1131)
|+|.+|++.
T Consensus 141 ~~~~Lpl~~ 149 (471)
T 1mu5_A 141 YTFKLKIDI 149 (471)
T ss_dssp EEEEEEECT
T ss_pred EEEEEeccc
Confidence 777777653
No 128
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.57 E-value=5.4e-15 Score=177.03 Aligned_cols=111 Identities=20% Similarity=0.297 Sum_probs=90.0
Q ss_pred eCHHHHHHHHHHHHHHHhhccCCC----eEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhc
Q 042553 485 GDRVKLKQILSNLLSNAVKFTSEG----HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQR 560 (1131)
Q Consensus 485 gD~~rL~QIL~NLL~NAiKfT~~G----~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1131)
+|+.+|.|||.|||+||+||+..| .|.|.+....
T Consensus 27 ~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~------------------------------------------ 64 (530)
T 2zbk_B 27 NPARALYQTVRELIENSLDATDVHGILPNIKITIDLID------------------------------------------ 64 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEE------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECC------------------------------------------
Confidence 455999999999999999999875 4666653211
Q ss_pred cCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC-----CCCCcccchHHHHHHHHHhCCE-EEEEeecCCCccE-EEE
Q 042553 561 DENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE-----GEGGTGLGLGIVQSLVRLMGGD-IEIVDKENGERGT-CFR 633 (1131)
Q Consensus 561 ~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~-----~~~GtGLGLsIvk~Lv~~~gG~-I~v~s~~~gg~Gt-~f~ 633 (1131)
.....+.|+|.|+|+||++++++++|++|++.+. ..+|+||||+||+.++++|||+ |++.|..++ |+ +|+
T Consensus 65 -~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~--g~~~~~ 141 (530)
T 2zbk_B 65 -DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVN--SKRIYT 141 (530)
T ss_dssp -TTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTT--CSEEEE
T ss_pred -CcCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCC--CeEEEE
Confidence 0113578999999999999999999999987654 3479999999999999999999 999988653 44 788
Q ss_pred EEEeccc
Q 042553 634 FNVFLAI 640 (1131)
Q Consensus 634 ~~l~l~~ 640 (1131)
|.+|++.
T Consensus 142 ~~Lpl~~ 148 (530)
T 2zbk_B 142 FKLKIDI 148 (530)
T ss_dssp EEEEEET
T ss_pred EEEEecc
Confidence 8877753
No 129
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.54 E-value=2.5e-16 Score=151.41 Aligned_cols=115 Identities=29% Similarity=0.380 Sum_probs=104.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHh
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIR 1078 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR 1078 (1131)
.+|||+||++..+..+...|+..|+.+..+.++.+|++.+.. .+||+||+|+.||+++|++++++||
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------------~~~dlvi~d~~~~~~~g~~~~~~l~ 70 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS-------------KTPDVLLSDIRMPGMDGLALLKQIK 70 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS-------------CCCSCEEECSCSSHHHHCSTHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-------------CCCCEEEEeeecCCCCHHHHHHHHH
Confidence 479999999999999999999999999999999999998865 2699999999999999999999999
Q ss_pred hhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1079 EEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1079 ~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+. .+.+|||++|+....+...+++++|+++|+.||++.++|..+|+++
T Consensus 71 ~~----~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 118 (124)
T 1dc7_A 71 QR----HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 (124)
T ss_dssp HH----CTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHH
T ss_pred hh----CCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHH
Confidence 75 3468999999998888888899999999999999999999998764
No 130
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.54 E-value=7.8e-15 Score=154.05 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=100.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 997 RGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+.+||||||++..+..+..+|+..||.|..+.++.+|+ . ..||+||+|+.||+|||+ +++.
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~-------------~~~dlvl~D~~mp~~~g~-l~~~ 72 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D-------------VPVDVVFTSIFQNRHHDE-IAAL 72 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S-------------SCCSEEEEECCSSTHHHH-HHHH
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C-------------CCCCEEEEeCCCCccchH-HHHH
Confidence 356899999999999999999999999999998888766 1 269999999999999999 8888
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+|+.. +++|||++|++.+.+...+++++|+++||.||++.++|..+|+.+
T Consensus 73 ~~~~~----~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~ 122 (196)
T 1qo0_D 73 LAAGT----PRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSA 122 (196)
T ss_dssp HHHSC----TTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHH
T ss_pred HhccC----CCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHH
Confidence 88642 478999999999999999999999999999999999999888753
No 131
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.53 E-value=5.6e-14 Score=150.53 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=102.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhh
Q 042553 1000 KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIRE 1079 (1131)
Q Consensus 1000 ~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~ 1079 (1131)
+||||||++..+..+..+|+..|+.|..+.++.+|++.+... +||+|| ||++||+++++.||+
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-------------~~dlvi----lp~~~g~~~~~~lr~ 64 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR-------------NYDLVM----VSDKNALSFVSRIKE 64 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS-------------CCSEEE----ECCTTHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC-------------CCCEEE----eCCCCHHHHHHHHHh
Confidence 699999999999999999999999999999999999999763 799999 999999999999997
Q ss_pred hhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHh
Q 042553 1080 EEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPL-NRDHLMEAIKYL 1130 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~-~~~~L~~~I~~l 1130 (1131)
. . .++|||++|+..+.+...+++++|+++||.||+ +.++|..+|+.+
T Consensus 65 ~-~---~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~ 112 (223)
T 2hqr_A 65 K-H---SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEAR 112 (223)
T ss_dssp H-C---TTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHH
T ss_pred C-C---CCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHH
Confidence 5 1 268999999999999999999999999999999 999999999875
No 132
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.51 E-value=1.3e-14 Score=159.98 Aligned_cols=102 Identities=26% Similarity=0.349 Sum_probs=86.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHL-GATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~-g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
.+||||||++..++.+...|... |+.+.. .++.+++..+.. .+||+||+|++||+|||++++++|
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~-~~~~~~~~~~~~-------------~~~dlvllD~~mP~~~G~~~~~~l 70 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDA-FDTLEGARHCQG-------------DEYVVALVDLTLPDAPSGEAVKVL 70 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEE-ESSTGGGTTCCT-------------TTEEEEEEESCBTTBTTSHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEE-eChHHHHHHhhc-------------CCCcEEEEeCCCCCCCHHHHHHHH
Confidence 47999999999999999999764 777754 455566554432 379999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCH
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNR 1120 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~ 1120 (1131)
|+. .+|||++|++.+.+...+++++||++||+||+..
T Consensus 71 r~~------~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 71 LER------GLPVVILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp HHT------TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred HhC------CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 963 4899999999999999999999999999999754
No 133
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.49 E-value=1.8e-13 Score=157.26 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=100.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHL-GAT-VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~-g~~-v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
.+||||||++..+..+..+|+.. |++ +..+.++.+|++.+.+. .||+||+|+.||+|||++++++
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~-------------~pDlVllDi~mp~~dGlell~~ 70 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKF-------------NPDVLTLDVEMPRMDGLDFLEK 70 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-------------CCSEEEEECCCSSSCHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhcc-------------CCCEEEEECCCCCCCHHHHHHH
Confidence 58999999999999999999986 888 66999999999999874 6999999999999999999999
Q ss_pred HhhhhccCCCCccEEEEcccCCH--HHHHHHHHcCCCEEEECCCCH---------HHHHHHHHHh
Q 042553 1077 IREEEKRNQVHIPIIALTAHISG--EEADKTIEAGMDVHLGKPLNR---------DHLMEAIKYL 1130 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~--~~~~~~l~aG~d~yL~KP~~~---------~~L~~~I~~l 1130 (1131)
||+. .+ +|||++|+.... +...+++++|+++||.||++. ++|.+.|+.+
T Consensus 71 l~~~----~p-~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~ 130 (349)
T 1a2o_A 71 LMRL----RP-MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTA 130 (349)
T ss_dssp HHHS----SC-CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred HHhc----CC-CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHH
Confidence 9975 23 899999998765 447889999999999999983 7888887653
No 134
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.48 E-value=1.7e-12 Score=154.83 Aligned_cols=115 Identities=20% Similarity=0.312 Sum_probs=98.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
+.+||++||+..++..+...|.. .+.+....++.+++.. .. ..||+|+||++||+|||+++++.|
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~-~~-------------~~~dlil~D~~mp~~dG~~~~~~i 216 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS-AG-------------GPVDLVIVNAAAKNFDGLRFTAAL 216 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH-HH-------------SSCSEEEEETTCSSSCHHHHHHHH
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh-cc-------------CCCCEEEEecCCCCCcHHHHHHHH
Confidence 45899999999998888888865 4677788899888633 33 268999999999999999999999
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
|+... ...+||+++|+....+...+|+++|+++|+.||++.+++...++.
T Consensus 217 r~~~~--~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~ 266 (459)
T 1w25_A 217 RSEER--TRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKT 266 (459)
T ss_dssp HTSGG--GTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHH
T ss_pred HhCcc--ccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHH
Confidence 98654 347899999999999999999999999999999999998876654
No 135
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.43 E-value=1.1e-13 Score=174.48 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=104.5
Q ss_pred eEEEEeCCH-HH-------HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC----
Q 042553 1000 KILVADDSM-ML-------RRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI---- 1067 (1131)
Q Consensus 1000 ~ILvvdD~~-~~-------~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~---- 1067 (1131)
+||||||++ .. ++.++..|++.||+|..|.||++|++.++.. ..||+||+|++||+
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~------------~~~d~vilDi~lp~~~~~ 69 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN------------EAIDCLMFSYQMEHPDEH 69 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT------------CCCSEEEEECCCCSHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC------------CCCcEEEEeCCCCccccc
Confidence 799999999 88 8999999999999999999999999999863 24999999999999
Q ss_pred CCHHHHHHHHhhhhccCCCCccEEEEcccCC-HHHHHHHHHcCCCEEEECCCCHHH-HHHHHHHh
Q 042553 1068 MNGYEATRKIREEEKRNQVHIPIIALTAHIS-GEEADKTIEAGMDVHLGKPLNRDH-LMEAIKYL 1130 (1131)
Q Consensus 1068 mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~-~~~~~~~l~aG~d~yL~KP~~~~~-L~~~I~~l 1130 (1131)
|||++++++||+. ...+|||++|+... .+++...+..|+|||++||++..+ |..+|+++
T Consensus 70 ~~G~~ll~~iR~~----~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~ 130 (755)
T 2vyc_A 70 QNVRQLIGKLHER----QQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAA 130 (755)
T ss_dssp HHHHHHHHHHHHH----STTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHh----CCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHH
Confidence 9999999999986 34699999999887 788889999999999999999999 87887754
No 136
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.40 E-value=3.1e-13 Score=163.85 Aligned_cols=110 Identities=20% Similarity=0.341 Sum_probs=85.1
Q ss_pred EEeCHHHHHHHHHHHHHHHhhccCC-C---eEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhh
Q 042553 483 VKGDRVKLKQILSNLLSNAVKFTSE-G---HISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAA 558 (1131)
Q Consensus 483 v~gD~~rL~QIL~NLL~NAiKfT~~-G---~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1131)
+.+|+.+|.|||.|||+||++|+.. | .|.|.+...
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~----------------------------------------- 69 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERT----------------------------------------- 69 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----------------------------------------
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----------------------------------------
Confidence 5689999999999999999999984 5 566543211
Q ss_pred hccCCCcEEEEEEEecCCCCCcchHhhhccCCe------ecCCCCCCcccchHHHHHHHHHhCCE-EEEEeecCCC-ccE
Q 042553 559 QRDENAMEFTFEVDDTGKGIPKEKRKTVFENYV------QVKEGEGGTGLGLGIVQSLVRLMGGD-IEIVDKENGE-RGT 630 (1131)
Q Consensus 559 ~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~------q~~~~~~GtGLGLsIvk~Lv~~~gG~-I~v~s~~~gg-~Gt 630 (1131)
....+.|+|.|+|+|||++.++++|++|+ +.+...+|+||||++|+.+++.|||+ |++++..+++ .|+
T Consensus 70 ----~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~ 145 (621)
T 2q2e_B 70 ----GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAH 145 (621)
T ss_dssp ----TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEE
T ss_pred ----CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccce
Confidence 11257899999999999999999997664 33345589999999999999999999 8998876532 455
Q ss_pred EEEEEEe
Q 042553 631 CFRFNVF 637 (1131)
Q Consensus 631 ~f~~~l~ 637 (1131)
+|+|.+|
T Consensus 146 ~~~~~lp 152 (621)
T 2q2e_B 146 YYELMIN 152 (621)
T ss_dssp EEECCCC
T ss_pred EEEEecc
Confidence 5554443
No 137
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.81 E-value=2e-09 Score=115.63 Aligned_cols=90 Identities=24% Similarity=0.306 Sum_probs=73.4
Q ss_pred CEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHH
Q 042553 1023 ATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEA 1102 (1131)
Q Consensus 1023 ~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~ 1102 (1131)
+.|..+.++.+|++.+... .||+||+|++||++||++++++||+... ..++++++.....+..
T Consensus 6 ~~v~~~~~~~~a~~~~~~~-------------~~dlvl~D~~~p~~~g~~~~~~l~~~~~----~~~i~vi~~~~~~~~~ 68 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKEL-------------KPDIVTMDITMPEMNGIDAIKEIMKIDP----NAKIIVCSAMGQQAMV 68 (237)
T ss_dssp EEEECCCSSSTTHHHHHHH-------------CCSCEEEECCSTTSSHHHHHHHHHHHSS----SCCEEEECCSSTHHHH
T ss_pred EEEEECCCHHHHHHHHHhc-------------CCCEEEEeCCCCCCCHHHHHHHHHHhCC----CCCEEEEECCCCHHHH
Confidence 4556689999999999874 6999999999999999999999997632 3445555555568889
Q ss_pred HHHHHcCCCEEEECC--CCHHHHHHHHHH
Q 042553 1103 DKTIEAGMDVHLGKP--LNRDHLMEAIKY 1129 (1131)
Q Consensus 1103 ~~~l~aG~d~yL~KP--~~~~~L~~~I~~ 1129 (1131)
.+++++|+++|+.|| ++..+|...+.+
T Consensus 69 ~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~ 97 (237)
T 3cwo_X 69 IEAIKAGAKDFIVNTAAVENPSLITQIAQ 97 (237)
T ss_dssp HHHHHTTCCEEEESHHHHHCTHHHHHHHH
T ss_pred HHHHHCCHHheEeCCcccChHHHHHHHHH
Confidence 999999999999999 777777776654
No 138
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.48 E-value=1.9e-07 Score=107.15 Aligned_cols=84 Identities=20% Similarity=0.180 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEE
Q 042553 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT 568 (1131)
Q Consensus 489 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (1131)
++.|++.|||+||+++. .+.|.|.+... ....
T Consensus 34 ~~~~vl~eLv~NAiDA~-a~~I~I~i~~~-----------------------------------------------~~~~ 65 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG-ATNIDLKLKDY-----------------------------------------------GVDL 65 (365)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEEEEGG-----------------------------------------------GTSE
T ss_pred hHHHHHHHHHHHHHHCC-CCEEEEEEEeC-----------------------------------------------CcEE
Confidence 57899999999999986 34666655210 0136
Q ss_pred EEEEecCCCCCcchHhhhccCCeecCCC---------CCCc-ccchHHHHHHHHHhCCEEEEEeecC
Q 042553 569 FEVDDTGKGIPKEKRKTVFENYVQVKEG---------EGGT-GLGLGIVQSLVRLMGGDIEIVDKEN 625 (1131)
Q Consensus 569 i~V~DtG~GI~~e~~~~IFe~F~q~~~~---------~~Gt-GLGLsIvk~Lv~~~gG~I~v~s~~~ 625 (1131)
|+|.|+|+||++++++++|++|++.+.. ..|. |+||+.+..+ . .++|.++..
T Consensus 66 I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~~~ 127 (365)
T 1h7s_A 66 IEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTCHA 127 (365)
T ss_dssp EEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEECT
T ss_pred EEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCCCCchhhhhhhh----c-cEEEEEccC
Confidence 8999999999999999999999986432 1254 8999877654 2 677776654
No 139
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.40 E-value=2.6e-07 Score=106.93 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=65.5
Q ss_pred EeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCC
Q 042553 484 KGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDEN 563 (1131)
Q Consensus 484 ~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1131)
.||...+.+++.|+|+||+++ ..+.|.|.+.. +
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~~----------------------------------------------~ 63 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLNE----------------------------------------------D 63 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEECT----------------------------------------------T
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEEc----------------------------------------------C
Confidence 578899999999999999995 34567776521 0
Q ss_pred CcEEEEEEEecCCCCCcchHhh--------hccCCeecCC--------CCCCcccchHHHHHHHHHhCC
Q 042553 564 AMEFTFEVDDTGKGIPKEKRKT--------VFENYVQVKE--------GEGGTGLGLGIVQSLVRLMGG 616 (1131)
Q Consensus 564 ~~~l~i~V~DtG~GI~~e~~~~--------IFe~F~q~~~--------~~~GtGLGLsIvk~Lv~~~gG 616 (1131)
. .|+|.|+|+|||++.+++ +|.+|+.... ..|+.|+||++|+.+++.+.-
T Consensus 64 ~---~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~v 129 (390)
T 1kij_A 64 G---SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVV 129 (390)
T ss_dssp S---CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEEE
T ss_pred C---EEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeecccccceEE
Confidence 1 589999999999999887 9999887521 235799999999999987643
No 140
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.31 E-value=1.3e-06 Score=99.23 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEE
Q 042553 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT 568 (1131)
Q Consensus 489 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (1131)
++.+++.|||+||+++. ...|.|.+... ....
T Consensus 24 ~~~~~v~ELi~NaidA~-a~~I~I~i~~~-----------------------------------------------~~~~ 55 (333)
T 1b63_A 24 RPASVVKELVENSLDAG-ATRIDIDIERG-----------------------------------------------GAKL 55 (333)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEGG-----------------------------------------------GTSE
T ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEEEeC-----------------------------------------------CceE
Confidence 57899999999999997 45676655310 0136
Q ss_pred EEEEecCCCCCcchHhhhccCCeecCC----------CCCCcccchHHHHHHHHHhCCEEEEEeecCC
Q 042553 569 FEVDDTGKGIPKEKRKTVFENYVQVKE----------GEGGTGLGLGIVQSLVRLMGGDIEIVDKENG 626 (1131)
Q Consensus 569 i~V~DtG~GI~~e~~~~IFe~F~q~~~----------~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~g 626 (1131)
|+|.|+|+||++++++.+|++|++.+. ..|+.|+||+.+..+ ++++|.++..+
T Consensus 56 i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~~~~ 118 (333)
T 1b63_A 56 IRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSV-----SRLTLTSRTAE 118 (333)
T ss_dssp EEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEECTT
T ss_pred EEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCccccchhhhhcC-----CcEEEEEecCC
Confidence 899999999999999999999998642 235689999987553 36889888654
No 141
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=98.26 E-value=2.2e-06 Score=90.46 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=37.9
Q ss_pred HHHhCCEEEEEeecCCCccEEEEEEEeccccccccCCCCCcccccccCCCCCCCccccccccccccCCCCCccccCCCCc
Q 042553 611 VRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPR 690 (1131)
Q Consensus 611 v~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1131)
+.+|||+|+|+|.+ |+||+|+|.+|+.......... .+.
T Consensus 16 ~~~hgG~i~v~S~~--g~Gs~f~~~lP~~~~~~~~~~~----------------------------~~~----------- 54 (206)
T 3mm4_A 16 RGSHMASTDSESET--RVKSVRTGRKPIGNPEDEQETS----------------------------KPS----------- 54 (206)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCceeeeccC--CCcceeeeccCCCCCccccccc----------------------------CCC-----------
Confidence 57899999999876 5899999999875432110000 000
Q ss_pred cccCCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHcCC-eeeecccHHHHHHHHHH
Q 042553 691 LNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGI-NVSAVSRWERLHSTLKR 744 (1131)
Q Consensus 691 ~~~~~~~~~~~~~~vll~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~l~~~l~~ 744 (1131)
......+.++++++|++..+..+..+|+.+|+ .+..+.+..+....+..
T Consensus 55 -----~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~ 104 (206)
T 3mm4_A 55 -----DDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTE 104 (206)
T ss_dssp -----CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHH
T ss_pred -----cccccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHh
Confidence 01112456899999999999999999999998 88888888876655543
No 142
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.11 E-value=5.7e-06 Score=93.75 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEE
Q 042553 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT 568 (1131)
Q Consensus 489 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (1131)
++.+++.|||.||+++. .+.|.|.+... ....
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~~~-----------------------------------------------~~~~ 59 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVKEG-----------------------------------------------GLKL 59 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEGG-----------------------------------------------GTSE
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEEeC-----------------------------------------------CEEE
Confidence 57899999999999994 45676665210 0136
Q ss_pred EEEEecCCCCCcchHhhhccCCeecCCCC----------CCcccchHHHHHHHHHhCCEEEEEeecCC
Q 042553 569 FEVDDTGKGIPKEKRKTVFENYVQVKEGE----------GGTGLGLGIVQSLVRLMGGDIEIVDKENG 626 (1131)
Q Consensus 569 i~V~DtG~GI~~e~~~~IFe~F~q~~~~~----------~GtGLGLsIvk~Lv~~~gG~I~v~s~~~g 626 (1131)
|+|.|+|+||++++++++|+||++.+... |=-|.||+-+-.+. +++|.++..+
T Consensus 60 I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~~ 122 (348)
T 3na3_A 60 IQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTAD 122 (348)
T ss_dssp EEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHHHSS-----EEEEEEECTT
T ss_pred EEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEECC
Confidence 89999999999999999999999875321 22377876544432 6888887654
No 143
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.09 E-value=5.4e-06 Score=96.81 Aligned_cols=90 Identities=24% Similarity=0.295 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHHHhhcc----CCCeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhcc
Q 042553 486 DRVKLKQILSNLLSNAVKFT----SEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRD 561 (1131)
Q Consensus 486 D~~rL~QIL~NLL~NAiKfT----~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (1131)
+...+..++.+|+.||+||. +.|.|.|++....
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~------------------------------------------- 330 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAG------------------------------------------- 330 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcC-------------------------------------------
Confidence 34578999999999999998 3577888775321
Q ss_pred CCCcEEEEEEEecCCCCCcchHhhhccCCeecCCCCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccc
Q 042553 562 ENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAI 640 (1131)
Q Consensus 562 ~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~ 640 (1131)
...++++|.|+|+|+|+. ...++.|+||.|++++++.++ +.+. +.|+++++.++++.
T Consensus 331 --~~~l~i~V~D~G~g~~~~-------------~~~~~~G~GL~lv~~l~~~~~----~~~~---~~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 331 --DGNVRASVIDRGQWKDHR-------------DGARGRGRGLAMAEALVSEAR----IMHG---AGGTTATLTHRLSR 387 (399)
T ss_dssp --TSEEEEEEEESCBC-------------------------CHHHHHTTSSEEE----EEEE---TTEEEEEEEEECEE
T ss_pred --CCEEEEEEEECCCCCCCC-------------CCCCCCCcHHHHHHHHHHhee----eEEC---CCcEEEEEEEEcCC
Confidence 125899999999999886 122478999999999998654 4433 24999999988764
No 144
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.01 E-value=1.9e-05 Score=73.81 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=46.7
Q ss_pred HHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042553 368 MNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDT 429 (1131)
Q Consensus 368 ~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdl 429 (1131)
..+..|++++||||||||++|.++++++.. +....+..+..++.+|..+++++|++
T Consensus 58 ~~~~~~~~~~shel~tpl~~i~~~~e~l~~------~~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 58 DDGTLLMAGVSHDLRTPLTRIRLATEMMSE------QDGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCG------GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHcChHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446679999999999999999999997632 22344588999999999999999987
No 145
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.94 E-value=1.1e-05 Score=92.35 Aligned_cols=93 Identities=14% Similarity=0.211 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEeecCCCCCCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEE
Q 042553 489 KLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFT 568 (1131)
Q Consensus 489 rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (1131)
++.+++.||++||+++. ...|.|.+. .. ....
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~--~~---------------------------------------------~~~~ 56 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFK--DY---------------------------------------------GLES 56 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--TT---------------------------------------------TTSE
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEE--eC---------------------------------------------CEEE
Confidence 57899999999999985 446666552 10 0236
Q ss_pred EEEEecCCCCCcchHhhhccCCeecCCCC---------CC-cccchHHHHHHHHHhCCEEEEEeecCCCccEEEEE
Q 042553 569 FEVDDTGKGIPKEKRKTVFENYVQVKEGE---------GG-TGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRF 634 (1131)
Q Consensus 569 i~V~DtG~GI~~e~~~~IFe~F~q~~~~~---------~G-tGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~ 634 (1131)
|+|.|+|+||++++++.+|++|+..+... .| -|-||+-+-.+ . +++|.++..++.|....+
T Consensus 57 i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~av----S-~l~V~sr~~~~~~~~~~~ 127 (367)
T 3h4l_A 57 IECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGI----A-KLSVITTTSPPKADKLEY 127 (367)
T ss_dssp EEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHHHHS----S-EEEEEEESSTTCEEEEEE
T ss_pred EEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHhhcc----C-EEEEEEEECCCCEEEEEE
Confidence 99999999999999999999999864311 13 26677654433 2 789988865434555444
No 146
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.82 E-value=0.00012 Score=76.20 Aligned_cols=140 Identities=17% Similarity=0.113 Sum_probs=73.6
Q ss_pred HHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeeeecHHHHHHH
Q 042553 373 AFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLED 452 (1131)
Q Consensus 373 flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~~~~dL~~ll~~ 452 (1131)
.+....||..+=|..|.|++++= ..++..+++..+....+... .++++.. ..+..
T Consensus 24 ~LR~qrHdf~NkLqvI~GLlql~-----~ydea~~yI~~~~~~~q~~~-------~~~~i~~-------------P~la~ 78 (192)
T 1ixm_A 24 LLGHSRHDWMNKLQLIKGNLSLQ-----KYDRVFEMIEEMVIDAKHES-------KLSNLKT-------------PHLAF 78 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHH-------HHHTTTC-------------HHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHH-------HHHhCCC-------------HHHHH
Confidence 35567899999999999999862 12455566665554444322 1333321 12333
Q ss_pred HHHHHHHHHHcCCcEE-EEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhcc-------CCCeEEEEEeecCCCCCCC
Q 042553 453 VVDLFHPVAMRKGVEV-VLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFT-------SEGHISVRACVKKPSAIGN 524 (1131)
Q Consensus 453 v~~~~~~~a~~k~i~l-~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT-------~~G~I~v~~~~~~~~~~~~ 524 (1131)
++-.....|.+.++++ .++..... ...+..+ .||++||+... .++.|.|.+....
T Consensus 79 lLl~K~~~a~e~~i~lev~~~~s~l-------~~~~~~l----gnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~------ 141 (192)
T 1ixm_A 79 DFLTFNWKTHYMTLEYEVLGEIKDL-------SAYDQKL----AKLMRKLFHLFDQAVSRESENHLTVSLQTDH------ 141 (192)
T ss_dssp HHHHGGGSCCSSEEEEEEESSCCCC-------TTTHHHH----HHHHHHHHHHHHHHBCTTSCCEEEEEEECCC------
T ss_pred HHHHHHHHhccCCeEEEEecCcccc-------CCCcHHH----HHHHHHHHHHHHhhhccCCCCeEEEEEEEec------
Confidence 3333444455555555 33432211 1123333 55554444432 3456777664210
Q ss_pred CCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCee
Q 042553 525 PSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQ 592 (1131)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q 592 (1131)
+...+.|.|.|+|+||+++.++++|+..+.
T Consensus 142 --------------------------------------~~~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 142 --------------------------------------PDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp --------------------------------------SSSSCEEEEEEESCBSCGGGCC--------
T ss_pred --------------------------------------CCCEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 012478999999999999999999986543
No 147
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.24 E-value=0.00088 Score=62.10 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=47.0
Q ss_pred HHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042553 369 NKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSK 431 (1131)
Q Consensus 369 ~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlsk 431 (1131)
.+..|++++|||||||++.|.+.++.+... ..+....+...+.+|..++++++++++
T Consensus 59 ~~~~~~~~~shel~~~l~~i~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 59 DRTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 366789999999999999999999865322 245677888999999999999998764
No 148
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.16 E-value=0.00022 Score=76.05 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=36.1
Q ss_pred EEEEEecCCCCCcchHhhhccCCeecC-----------C---CCCCcccchHHHHHHHHHhCCEEEEEeecC
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYVQVK-----------E---GEGGTGLGLGIVQSLVRLMGGDIEIVDKEN 625 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~q~~-----------~---~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~ 625 (1131)
.|.|.|+|+||+++++...|..+.+.. . ..|..|+|+.-+.. .+-++.|.++..
T Consensus 74 ~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~----~~~~v~v~S~~~ 141 (220)
T 2wer_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL----VADRVQVISKSN 141 (220)
T ss_dssp EEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh----cCCeeEEEEecC
Confidence 589999999999999988887654321 1 12446899854433 344566666544
No 149
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.75 E-value=0.00066 Score=73.01 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=37.0
Q ss_pred EEEEEecCCCCCcchHhhhccCCeecCC----------------CCCCcccchHHHHHHHHHhCCEEEEEeecC
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYVQVKE----------------GEGGTGLGLGIVQSLVRLMGGDIEIVDKEN 625 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~q~~~----------------~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~ 625 (1131)
.|.|.|+|+||+++++...|..+.+... ..|..|+||.-+-. .+-.+.|.++..
T Consensus 95 ~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~----~~~~v~V~Sr~~ 164 (235)
T 2ior_A 95 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI----VADKVTVRTRAA 164 (235)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHh----CcCeEEEEEecC
Confidence 4899999999999999998876644210 12457999964422 344567766654
No 150
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=96.71 E-value=0.0011 Score=72.08 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=70.6
Q ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHH
Q 042553 994 KPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073 (1131)
Q Consensus 994 ~~~~~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~ 1073 (1131)
..+.+++|||||||+.++..+..+|...|++|..+.+ .. ..+||+||+|..||...+.
T Consensus 7 ~~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~--------~~------------~~~~~~ii~d~~~~~~~~~-- 64 (254)
T 2ayx_A 7 EGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG--------QE------------PTPEDVLITDEVVSKKWQG-- 64 (254)
T ss_dssp CTTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS--------CC------------CCTTCEEEEESSCSCCCCS--
T ss_pred cccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC--------CC------------CCcCcEEEEcCCCcccccc--
Confidence 3467889999999999999999999999999988864 01 1369999999999986541
Q ss_pred HHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
..++.++...... ....+...++.||+...+|...+.+
T Consensus 65 --------------~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~ 102 (254)
T 2ayx_A 65 --------------RAVVTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLAR 102 (254)
T ss_dssp --------------SEEEEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHH
T ss_pred --------------ceEEEEecccCCC----cccccCCceeccccchHHHHHHHHH
Confidence 1255555532110 1123556899999998888777754
No 151
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.61 E-value=0.00066 Score=74.20 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=34.8
Q ss_pred EEEEEecCCCCCcchHhhhccCCeec-----------C-----CC---CCCcccchHHHHHHHHHhCCEEEEEeecC
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYVQV-----------K-----EG---EGGTGLGLGIVQSLVRLMGGDIEIVDKEN 625 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~q~-----------~-----~~---~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~ 625 (1131)
.|.|.|||+||+++++...|..+.+. . .. .|..|+|+.-+..++ -.+.|.++..
T Consensus 76 ~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va----~~v~V~Sk~~ 148 (269)
T 1qy5_A 76 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKHN 148 (269)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTE----EEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhcc----ceEEEEEEec
Confidence 58999999999999987777544221 0 11 145799987665443 4555555443
No 152
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.56 E-value=0.0058 Score=70.51 Aligned_cols=47 Identities=26% Similarity=0.502 Sum_probs=36.7
Q ss_pred EEEEEecCCCCCcch--------HhhhccCCeecCC-------CCCC-cccchHHHHHHHHHh
Q 042553 568 TFEVDDTGKGIPKEK--------RKTVFENYVQVKE-------GEGG-TGLGLGIVQSLVRLM 614 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~--------~~~IFe~F~q~~~-------~~~G-tGLGLsIvk~Lv~~~ 614 (1131)
.|+|.|+|.|||.+. ++.+|.+|+...+ -.+| .|.||+.+..+.+.+
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~~l 126 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRV 126 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEE
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhccc
Confidence 489999999999998 7889999765421 1245 799999998887544
No 153
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=96.49 E-value=0.0062 Score=59.48 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=34.1
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCe-eeecccHHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGIN-VSAVSRWERLHSTLK 743 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~l~~~l~ 743 (1131)
+.++++++|++..|.++..+|+.+|+. +..+.++.+....++
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~ 54 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK 54 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH
Confidence 457999999999999999999999996 556777776554443
No 154
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.05 E-value=0.014 Score=61.71 Aligned_cols=72 Identities=25% Similarity=0.228 Sum_probs=58.2
Q ss_pred CccEEEEcC-CCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE------ECCCCHHHHHHHH
Q 042553 1055 PYDYILMDC-EMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL------GKPLNRDHLMEAI 1127 (1131)
Q Consensus 1055 ~~DlILmDi-~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL------~KP~~~~~L~~~I 1127 (1131)
..+++++++ .++.++|++ ++.|++.... .++|||++++....++..+++++|||+++ .+|+++.++.+.+
T Consensus 144 ~~~vli~~~~~~g~~~g~~-~~~i~~~~~~--~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l 220 (237)
T 3cwo_X 144 AGEILLTSIDRDGTKSGYD-TEMIRFVRPL--TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYL 220 (237)
T ss_dssp CSEEEEEETTTTTCCSCCC-HHHHHHHGGG--CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred CCeEEEEecCCCCcccccc-HHHHHHHHHh--cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHH
Confidence 356889997 788888876 5555544322 36899999999999999999999999995 7999999998877
Q ss_pred HH
Q 042553 1128 KY 1129 (1131)
Q Consensus 1128 ~~ 1129 (1131)
++
T Consensus 221 ~~ 222 (237)
T 3cwo_X 221 KK 222 (237)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 155
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=95.91 E-value=0.0083 Score=65.38 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=40.8
Q ss_pred EEEEEecCCCCCcchHhhhccCCeecC-----------C---CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccE
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYVQVK-----------E---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGT 630 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~q~~-----------~---~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt 630 (1131)
.|.|.|+|+||+++++...|.++.+.. . ..|..|+|+.-+-. ..-++.|.++..+..|.
T Consensus 116 ~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~----va~~v~V~Sr~~~~~~~ 188 (264)
T 1yc1_A 116 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVTVITKHNDDEQY 188 (264)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH----HEEEEEEEEECTTSCCE
T ss_pred EEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc----CCCEEEEEEecCCCceE
Confidence 589999999999999987776554321 1 12456899875544 45678898886554443
No 156
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=95.89 E-value=0.029 Score=53.82 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=34.2
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeee-ecccHHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVS-AVSRWERLHSTLK 743 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~l~~~l~ 743 (1131)
..++++++|++..+..+..+|+.+|+.|. .+.++++....++
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~ 50 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR 50 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45799999999999999999999999985 5777776554443
No 157
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=95.64 E-value=0.0061 Score=75.71 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=72.7
Q ss_pred HHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEE
Q 042553 1012 RVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPII 1091 (1131)
Q Consensus 1012 ~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipII 1091 (1131)
+.+...|++.||+|..+.++++|+..+++. ..+++|++|++|+ +.+++++||+. +..+||+
T Consensus 20 ~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~------------~~i~avIld~d~~---~~~ll~~Ir~~----~~~iPVF 80 (715)
T 3n75_A 20 RELHRALERLNFQIVYPNDRDDLLKLIENN------------ARLCGVIFDWDKY---NLELCEEISKM----NENLPLY 80 (715)
T ss_dssp HHHHHHHHHTTCEEECCSSHHHHHHHHHHC------------TTEEEEEEEHHHH---HHHHHHHHHHH----CTTCEEE
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHHhC------------CCceEEEEecccc---HHHHHHHHHHh----CCCCCEE
Confidence 345588999999999999999999999874 3589999999997 78999999986 4579999
Q ss_pred EEcccCCHHHHHHHHHcCCCEEEECCCCHHHH
Q 042553 1092 ALTAHISGEEADKTIEAGMDVHLGKPLNRDHL 1123 (1131)
Q Consensus 1092 alTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L 1123 (1131)
+++.....++.....-.++++|+.+..+..+.
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (715)
T 3n75_A 81 AFANTYSTLDVSLNDLRLQISFFEYALGAAED 112 (715)
T ss_dssp EECCTTCCCCGGGTTSCCEEEEECCCTTCHHH
T ss_pred EEecCCcccccchhhhhccCeEEEeCCCCHHH
Confidence 99987543333222235789999988754333
No 158
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=95.05 E-value=0.053 Score=62.44 Aligned_cols=47 Identities=26% Similarity=0.523 Sum_probs=34.2
Q ss_pred EEEEEecCCCCCcch--------HhhhccCCeecCC-------CCCC-cccchHHHHHHHHHh
Q 042553 568 TFEVDDTGKGIPKEK--------RKTVFENYVQVKE-------GEGG-TGLGLGIVQSLVRLM 614 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~--------~~~IFe~F~q~~~-------~~~G-tGLGLsIvk~Lv~~~ 614 (1131)
.|+|.|+|.|||.+. .+.+|..+....+ -.+| .|.||+.+..+.+.+
T Consensus 67 ~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~~l 129 (391)
T 1ei1_A 67 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL 129 (391)
T ss_dssp CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEE
T ss_pred EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcCeE
Confidence 489999999999998 4558885544311 1245 799999998877544
No 159
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=94.93 E-value=0.017 Score=62.07 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=38.1
Q ss_pred EEEEEecCCCCCcchHhhhccCCeecCC---------------C----CCCcccchHHHHHHHHHhCCEEEEEeecCCCc
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYVQVKE---------------G----EGGTGLGLGIVQSLVRLMGGDIEIVDKENGER 628 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~q~~~---------------~----~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~ 628 (1131)
.|.|.|+|+||+++++...|..+.+... . .|..|+|+.-+-. ..-++.|.|+..+..
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~----va~~v~V~Sr~~~~~ 155 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL----VADKVIVTSKHNNDT 155 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGG----TEEEEEEEEECTTSC
T ss_pred EEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhh----cCCEEEEEEeCCCCc
Confidence 5899999999999999888866543210 0 0236888854443 347899988875444
Q ss_pred c
Q 042553 629 G 629 (1131)
Q Consensus 629 G 629 (1131)
|
T Consensus 156 ~ 156 (236)
T 2gqp_A 156 Q 156 (236)
T ss_dssp C
T ss_pred e
Confidence 4
No 160
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=94.81 E-value=0.095 Score=56.11 Aligned_cols=41 Identities=7% Similarity=0.080 Sum_probs=34.7
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~ 743 (1131)
.++++++|++..+..+..+|+..|+.+..+.+..++...+.
T Consensus 24 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~ 64 (250)
T 3r0j_A 24 ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR 64 (250)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
Confidence 57899999999999999999999999998888876655443
No 161
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=94.10 E-value=0.18 Score=48.72 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=31.5
Q ss_pred CCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 701 EGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 701 ~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.+.++++++|++..+..+..+++..|+.+..+.+.++....+
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~ 54 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAM 54 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH
Confidence 346799999999999999999999999998887776554433
No 162
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=93.95 E-value=0.28 Score=46.93 Aligned_cols=116 Identities=11% Similarity=0.177 Sum_probs=70.1
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHHhhhcCCCccccCCCCCCCCCCcCCCCccCCccccccc
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLS 781 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1131)
+.+++++++++..+..+..+|+..|+.+..+.+..+....+.+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~------------------------------------- 47 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSG------------------------------------- 47 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-------------------------------------
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhc-------------------------------------
Confidence 4579999999999999999999999999888877665433321
Q ss_pred ccccchhhhccccccCCCceEEEEecCCCcchHHHHHHHHHHhhhcccceeEEEccCCCccccccCCCccccCCCCCccc
Q 042553 782 AMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVL 861 (1131)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~il~vid~~~~~~~~~~~~~~~~~~~~~~~~~vv~l~~~~~~~i~~~~l~~~~~~~~~~~l 861 (1131)
...+.+ +++|..........+.+..+++. ..++++.+........ .......+.+.++
T Consensus 48 --------------~~~~dl--vi~D~~l~~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~~~----~~~~~~~g~~~~l 105 (140)
T 3h5i_A 48 --------------GWYPDL--ILMDIELGEGMDGVQTALAIQQI--SELPVVFLTAHTEPAV----VEKIRSVTAYGYV 105 (140)
T ss_dssp --------------TCCCSE--EEEESSCSSSCCHHHHHHHHHHH--CCCCEEEEESSSSCCC----CGGGGGSCEEEEE
T ss_pred --------------CCCCCE--EEEeccCCCCCCHHHHHHHHHhC--CCCCEEEEECCCCHHH----HHHHHhCCCcEEE
Confidence 001222 33333221112233444444432 3456666654433211 1122233667899
Q ss_pred cccccchhHHHHHhh
Q 042553 862 LKPFHGSRLYKVIKL 876 (1131)
Q Consensus 862 ~kP~~~s~l~~~l~~ 876 (1131)
.||+....|...+..
T Consensus 106 ~KP~~~~~l~~~i~~ 120 (140)
T 3h5i_A 106 MKSATEQVLITIVEM 120 (140)
T ss_dssp ETTCCHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHH
Confidence 999999999888865
No 163
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=93.52 E-value=1.2 Score=44.41 Aligned_cols=115 Identities=19% Similarity=0.128 Sum_probs=80.0
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-C-
Q 042553 998 GKKILVA----DDSMMLRRVAEINLRHLGATVEA---CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-M- 1068 (1131)
Q Consensus 998 ~~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~---a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-m- 1068 (1131)
..+||+. |-+.+-..++..+|+..||+|.. ....++.++.+.+. .+|+|.+-+.|.. +
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~-------------~~diV~lS~~~~~~~~ 84 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQE-------------DVDVIGVSILNGAHLH 84 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHT-------------TCSEEEEEESSSCHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc-------------CCCEEEEEeechhhHH
Confidence 4578888 88888899999999999999985 35678888888763 7999999887763 1
Q ss_pred CHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1069 NGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1069 dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
.--++++.+|+.. ..+++|+ +.+....++...+.+.|+|.+...--+..+..+.++.
T Consensus 85 ~~~~~i~~L~~~g---~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~ 141 (161)
T 2yxb_A 85 LMKRLMAKLRELG---ADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRK 141 (161)
T ss_dssp HHHHHHHHHHHTT---CTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHH
Confidence 1234455666532 1256655 4555666666667789999866654455555555543
No 164
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=93.42 E-value=0.14 Score=61.33 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=19.3
Q ss_pred EEEEEecCCCCCcchHhhhccCC
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENY 590 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F 590 (1131)
.|+|.|||+||+++++..-|...
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~ti 97 (559)
T 1y4s_A 75 TLTISDNGVGMTRDEVIDHLGTI 97 (559)
T ss_dssp EEEEEECSSCCCHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhhh
Confidence 58999999999999987766543
No 165
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=93.25 E-value=0.086 Score=56.06 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=39.9
Q ss_pred EEEEEecCCCCCcchHhhhccCCeecC-----------C---CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccEE
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYVQVK-----------E---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTC 631 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~q~~-----------~---~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~ 631 (1131)
.|.|.|+|+||+++++...|.+..... . ..|--|+||.-+-. ..-++.|.|+..+..|..
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~----vad~v~V~Sr~~~~~~~~ 153 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVTVITKHNDDEQYA 153 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECTTSCEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc----cCCEEEEEEecCCCCcEE
Confidence 589999999999999987776543310 1 12456899875522 234899988875444443
No 166
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=92.99 E-value=0.41 Score=52.62 Aligned_cols=111 Identities=13% Similarity=0.194 Sum_probs=71.7
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeee-ecccHHHHHHHHHHhhhcCCCccccCCCCCCCCCCcCCCCccCCccccccc
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVS-AVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLS 781 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1131)
.++++++|++..+..+..+|+.+|+.|. .+.++.+....+.... + ...+.|+.++
T Consensus 161 ~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~----------------------dlvl~D~~MP 216 (286)
T 3n0r_A 161 TEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--P----------------------GLVLADIQLA 216 (286)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--C----------------------SEEEEESCCT
T ss_pred CcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--C----------------------CEEEEcCCCC
Confidence 4789999999999999999999999999 8888887665554321 1 1234455566
Q ss_pred -ccccchhhhccccccCCCceEEEEecCCCcchHHHHHHHHHHhhhcccceeEEEccCCCccccccCCCccccCCCCCcc
Q 042553 782 -AMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDV 860 (1131)
Q Consensus 782 -~~~~~~~~~~~~~~~~~~~~il~vid~~~~~~~~~~~~~~~~~~~~~~~~~vv~l~~~~~~~i~~~~l~~~~~~~~~~~ 860 (1131)
.|+|.+... .+|... .++++.++..... .......+.+.+
T Consensus 217 d~mdG~e~~~-------------------------------~ir~~~--~~piI~lT~~~~~------~~~~~~~G~~~~ 257 (286)
T 3n0r_A 217 DGSSGIDAVK-------------------------------DILGRM--DVPVIFITAFPER------LLTGERPEPTFL 257 (286)
T ss_dssp TSCCTTTTTH-------------------------------HHHHHT--TCCEEEEESCGGG------GCCSSSCCCSSE
T ss_pred CCCCHHHHHH-------------------------------HHHhcC--CCCEEEEeCCHHH------HHHHHhCCCcEE
Confidence 566654432 222211 3444444433211 111223467889
Q ss_pred ccccccchhHHHHHhh
Q 042553 861 LLKPFHGSRLYKVIKL 876 (1131)
Q Consensus 861 l~kP~~~s~l~~~l~~ 876 (1131)
+.||+....|...+..
T Consensus 258 l~KP~~~~~L~~~i~~ 273 (286)
T 3n0r_A 258 ITKPFQPETVKAAIGQ 273 (286)
T ss_dssp EESSCCHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHH
Confidence 9999999999998865
No 167
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=92.89 E-value=0.29 Score=51.08 Aligned_cols=80 Identities=15% Similarity=0.299 Sum_probs=51.2
Q ss_pred CCCCchhhhhhhcCCCCcccccccc--ccccCceEEEeeeecCC-----CceEEecccccccccccceeee-cCcEEEEE
Q 042553 150 SVSTSTWFLKALNSTDGLGSLGTGW--SKARDALFLNTAGINGT-----RGAVSLGFPVKPITNLFAGINL-YGGRLSIA 221 (1131)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~w--~~~~~~~~~~~~~~~~~-----~g~~~~g~~~~~i~~~~~~~~~-~~~~~~~~ 221 (1131)
++.+++||..+++.+....+ +-. ...+...+...+.|.+. .|++.+.+..+.+.+.+..... .++.+++.
T Consensus 88 ~~~~~~w~~~~~~~~~~~~s--~~~~~~~~~~~~i~~~~pi~~~~~g~~~Gvl~~~i~~~~l~~~~~~~~~~~~g~~~l~ 165 (240)
T 3c8c_A 88 DPRVRPWYKDAKNAGKLVIT--APYADSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIV 165 (240)
T ss_dssp CGGGSHHHHHHHHHTSCEEC--CCEECTTTCCEEEEEEEEEECTTTCCEEEEEEEEECHHHHHHHHTCSCCTTSEEEEEE
T ss_pred CcccChHHHHHHhcCCcEEe--eceEcCCCCeEEEEEEEEEEECCCCeEEEEEEEEEEHHHHHHHHHhcccCCceEEEEE
Confidence 45678999988864322111 111 01122445455555433 2777788888888888876654 45788999
Q ss_pred ecCceEEEec
Q 042553 222 TNDGKVLVQG 231 (1131)
Q Consensus 222 ~~~g~~l~~~ 231 (1131)
+.+|.+++++
T Consensus 166 d~~G~ii~~~ 175 (240)
T 3c8c_A 166 SEDGTTIAHP 175 (240)
T ss_dssp ETTSBEEECS
T ss_pred cCCCcEEEeC
Confidence 9999999964
No 168
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=92.68 E-value=0.11 Score=54.33 Aligned_cols=81 Identities=11% Similarity=0.268 Sum_probs=55.4
Q ss_pred CCCCCCchhhhhhhcCCCCcccccccc--ccccCceEEEeeeecCC----CceEEecccccccccccceeeecCcEEEEE
Q 042553 148 PSSVSTSTWFLKALNSTDGLGSLGTGW--SKARDALFLNTAGINGT----RGAVSLGFPVKPITNLFAGINLYGGRLSIA 221 (1131)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~w--~~~~~~~~~~~~~~~~~----~g~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 221 (1131)
..++.+++||+.+++.+..+ +++-. ...+..++..++.|.+. .|++.+.+..+.+.+++..+.. |+.+++.
T Consensus 92 ~~~~~~r~~f~~a~~~~~~~--is~~~~~~~~g~~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l~~~~~~~~~-gg~~~l~ 168 (217)
T 4dah_A 92 KVNLADRSFFIKAKETKKTV--ISDSYSSRITGQPIFTICVPVLDSKRNVTDYLVAAIQIDYLKNLINLLSP-DVYIEVV 168 (217)
T ss_dssp CCBCTTSHHHHHHHHHCSCE--ECCCEECTTTCSEEEEEEEEEECTTSCEEEEEEEEEEHHHHHHHHHHHCT-TSCEEEE
T ss_pred CCCcchhHHHHHHHhcCCcE--EeceEEcCCCCCEEEEEEEEEECCCCCEEEEEEEEEcHHHHHHHHHhcCC-CcEEEEE
Confidence 34578899999998754332 22111 11223455566666432 3788888999999988887765 5899999
Q ss_pred ecCceEEEec
Q 042553 222 TNDGKVLVQG 231 (1131)
Q Consensus 222 ~~~g~~l~~~ 231 (1131)
+.+|++++.+
T Consensus 169 d~~G~ii~~~ 178 (217)
T 4dah_A 169 NQDGKMIFAS 178 (217)
T ss_dssp ETTSCEEEEE
T ss_pred cCCCCEEEeC
Confidence 9999999975
No 169
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=92.68 E-value=0.49 Score=46.27 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=35.0
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeee-ecccHHHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVS-AVSRWERLHSTLKR 744 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~l~~~l~~ 744 (1131)
.++++++++...+..+..+|+..|+.+. .+.+..++...+..
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~ 79 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKN 79 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh
Confidence 5789999999999999999999999988 78887776655543
No 170
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=92.56 E-value=0.36 Score=44.99 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=32.6
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHST 741 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~ 741 (1131)
.++++++|++..+..+..+++..|+.+..+.+..+....
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~ 41 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEK 41 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHH
Confidence 368899999999999999999999999988877665433
No 171
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=92.39 E-value=0.81 Score=43.51 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=35.4
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCC--eeeecccHHHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGI--NVSAVSRWERLHSTLKR 744 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~--~~~~~~~~~~l~~~l~~ 744 (1131)
..++++++++...+..+..+++..|. .+..+.+..++...+..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~ 53 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNE 53 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHH
Confidence 35788999999999999999999999 88888888776655543
No 172
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=92.32 E-value=0.29 Score=51.00 Aligned_cols=54 Identities=26% Similarity=0.490 Sum_probs=28.1
Q ss_pred EEEEEecCCCCCcchH--------hhh-ccCCeecCC------CCCC-cccchHHHHHHHHHhCCEEEEEeecC
Q 042553 568 TFEVDDTGKGIPKEKR--------KTV-FENYVQVKE------GEGG-TGLGLGIVQSLVRLMGGDIEIVDKEN 625 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~--------~~I-Fe~F~q~~~------~~~G-tGLGLsIvk~Lv~~~gG~I~v~s~~~ 625 (1131)
.|+|.|+|.|||.+.. +.+ +.+....+- ..+| -|.||+-+..+.+ .+.+++...
T Consensus 50 ~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS~----~l~v~t~~~ 119 (201)
T 3fv5_A 50 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK----RVEVNVRRD 119 (201)
T ss_dssp CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHHHHHTEE----EEEEEEEET
T ss_pred EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecchhhcccc----eEEEEEEec
Confidence 4899999999999984 443 555543221 1234 5889998777654 455555543
No 173
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=92.22 E-value=1.3 Score=41.90 Aligned_cols=116 Identities=12% Similarity=0.173 Sum_probs=71.6
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHHhhhcCCCccccCCCCCCCCCCcCCCCccCCccccccc
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLS 781 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1131)
..++++++++...+..+...|+..|+.+..+.+..+....++..
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~------------------------------------ 50 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG------------------------------------ 50 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC------------------------------------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc------------------------------------
Confidence 45789999999999999999999999998888776654433210
Q ss_pred ccccchhhhccccccCCCceEEEEecCCCcchHHHHHHHHHHhhh-cccceeEEEccCCCccccccCCCccccCCCCCcc
Q 042553 782 AMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRD-LQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDV 860 (1131)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~il~vid~~~~~~~~~~~~~~~~~~~-~~~~~~vv~l~~~~~~~i~~~~l~~~~~~~~~~~ 860 (1131)
.+ .++++|..... ......+..+++. ....++++.+......... ......+.+.+
T Consensus 51 ----------------~~--dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~----~~~~~~g~~~~ 107 (142)
T 3cg4_A 51 ----------------FS--GVVLLDIMMPG-MDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAK----MIGLQEYVVDY 107 (142)
T ss_dssp ----------------CC--EEEEEESCCSS-SCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCS----STTGGGGEEEE
T ss_pred ----------------CC--CEEEEeCCCCC-CCHHHHHHHHHhhcccCCCCEEEEECCCCHHHH----HHHHhcCccEE
Confidence 12 23334433211 2234455555543 2245677766554332111 11122355788
Q ss_pred ccccccchhHHHHHhh
Q 042553 861 LLKPFHGSRLYKVIKL 876 (1131)
Q Consensus 861 l~kP~~~s~l~~~l~~ 876 (1131)
+.||+....|...+..
T Consensus 108 l~kp~~~~~l~~~i~~ 123 (142)
T 3cg4_A 108 ITKPFDNEDLIEKTTF 123 (142)
T ss_dssp EESSCCHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHH
Confidence 9999999999888765
No 174
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=92.17 E-value=0.54 Score=43.80 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=33.7
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++++...+..+..+++..|+.+..+.+..++...+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l 43 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAM 43 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHH
Confidence 4688999999999999999999999999888877655444
No 175
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=92.10 E-value=0.77 Score=44.48 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=34.9
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
..++++++++...+..+..+|+..|+.+..+.+..++...+
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l 54 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLL 54 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHH
Confidence 46799999999999999999999999999888877665544
No 176
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=92.00 E-value=0.82 Score=43.27 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=32.2
Q ss_pred CCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 701 EGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 701 ~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
.+.++++++++...+..+...|+..|+.+..+.+..+.
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a 51 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAF 51 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHH
Confidence 45678999999999999999999999998888776654
No 177
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=91.96 E-value=0.73 Score=43.43 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=33.8
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
..++++++++...+..+..+|+..|+.+..+.+..+....+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~ 47 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYL 47 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHH
Confidence 35789999999999999999999999998888776654443
No 178
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=91.94 E-value=1.1 Score=40.75 Aligned_cols=39 Identities=8% Similarity=0.196 Sum_probs=32.2
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
+++++++++..+..+...++..|+.+..+.+..+....+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~ 41 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKF 41 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 588899999999999999999999998888776654433
No 179
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=91.74 E-value=0.63 Score=44.00 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=34.2
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeee-ecccHHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVS-AVSRWERLHSTLK 743 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~l~~~l~ 743 (1131)
..++++++++...+..+...|+..|+.+. .+.+..++...+.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~ 51 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAP 51 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHH
Confidence 46799999999999999999999999998 4777776554443
No 180
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=91.71 E-value=0.17 Score=61.81 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEEecCCCCCcchHhhhccC
Q 042553 568 TFEVDDTGKGIPKEKRKTVFEN 589 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~ 589 (1131)
.|+|.|||+||+++++..-|..
T Consensus 74 ~I~I~DnGiGMt~edl~~~l~t 95 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNLGT 95 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGGSS
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999998766643
No 181
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=91.63 E-value=0.67 Score=44.05 Aligned_cols=40 Identities=8% Similarity=0.168 Sum_probs=33.5
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++++...+..+..+++..|+.+..+.+..+....+
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~ 44 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQI 44 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 4688999999999999999999999999888877655444
No 182
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=91.54 E-value=0.19 Score=53.70 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=56.3
Q ss_pred CCCCCCchhhhhhhcCCCCccccccccc--cccCceEEEeeeecCC----CceEEecccccccccccceeee-cCcEEEE
Q 042553 148 PSSVSTSTWFLKALNSTDGLGSLGTGWS--KARDALFLNTAGINGT----RGAVSLGFPVKPITNLFAGINL-YGGRLSI 220 (1131)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~--~~~~~~~~~~~~~~~~----~g~~~~g~~~~~i~~~~~~~~~-~~~~~~~ 220 (1131)
..++.+++||+.++.+..+...+++-.. ..+..++..++.|.+. .|++.+.+..+.+.+++..+.+ .++.+++
T Consensus 92 ~~~~~~r~~f~~a~~~~~~~~~is~p~~~~~~g~~~i~~~~pi~~~~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l 171 (254)
T 3lif_A 92 ALDNSDRSYFRYHRANDDHTLLITGPIQSRTSGVWVFVVSRRLETTDGKFFGVVVATIESEYFSTFYKTFDLGPGGSISL 171 (254)
T ss_dssp CCBCTTSHHHHHHHHCCCCCCEEEEEEECTTTCCEEEEEEEEEECTTCCEEEEEEEEECHHHHHHHHTTSCCCTTCEEEE
T ss_pred CCCcccHHHHHHHHhCCCCCeEECCceecCCCCcEEEEEEeeeeCCCCCEeEEEEEEECHHHHHHHHHhcCcCCCcEEEE
Confidence 3457889999999885433222222111 1123445566666433 3677888999999998887765 5678999
Q ss_pred EecCceEEEec
Q 042553 221 ATNDGKVLVQG 231 (1131)
Q Consensus 221 ~~~~g~~l~~~ 231 (1131)
.+.+|.++++.
T Consensus 172 ~d~~G~ii~~~ 182 (254)
T 3lif_A 172 LHSDGRLLIQW 182 (254)
T ss_dssp EETTSBEEEEE
T ss_pred EeCCCcEEEEC
Confidence 99999999973
No 183
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=91.52 E-value=0.71 Score=43.20 Aligned_cols=42 Identities=5% Similarity=0.017 Sum_probs=34.6
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~ 743 (1131)
..+++++++++..+..+..+++..|+.+..+.+..+....+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~ 47 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS 47 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH
Confidence 457899999999999999999999999998888776655443
No 184
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=91.48 E-value=0.93 Score=42.92 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=34.2
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++++...+..+..+++..|+.+..+.+..++...+
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l 46 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQV 46 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHH
Confidence 5789999999999999999999999998888877665444
No 185
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=91.45 E-value=0.89 Score=41.07 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=33.8
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~ 743 (1131)
.++++++++...+..+...++.+|+.+..+.+..+....+.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~ 42 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLD 42 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHH
Confidence 46889999999999999999999999998887776554443
No 186
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=91.18 E-value=0.52 Score=44.67 Aligned_cols=42 Identities=10% Similarity=0.255 Sum_probs=32.9
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCe-eeecccHHHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGIN-VSAVSRWERLHSTLKR 744 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~l~~~l~~ 744 (1131)
.++++++|++..+..+..+++..|+. +..+.+..+....+..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~ 45 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKE 45 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHH
Confidence 46889999999999999999999974 6677777665555543
No 187
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=90.99 E-value=0.79 Score=43.35 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=36.4
Q ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHH
Q 042553 700 HEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 700 ~~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~ 743 (1131)
..+.++++++++...+..+..+|+.+|+.+..+.+..++...+.
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~ 59 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD 59 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHH
Confidence 44678999999999999999999999999998888776654443
No 188
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=90.99 E-value=0.52 Score=43.66 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=33.1
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.+++++++++..+..+...++..|+.+..+.+..+....+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~ 42 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV 42 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH
Confidence 4688999999999999999999999998888776654433
No 189
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=90.60 E-value=0.99 Score=41.71 Aligned_cols=40 Identities=5% Similarity=0.075 Sum_probs=32.9
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.+++++++++..+..+...++..|+.+..+.+..+....+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~ 43 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV 43 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH
Confidence 3688999999999999999999999998887776654444
No 190
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=90.51 E-value=0.17 Score=61.46 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=18.2
Q ss_pred EEEEEecCCCCCcchHhhhccC
Q 042553 568 TFEVDDTGKGIPKEKRKTVFEN 589 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~ 589 (1131)
.|+|.|||+||+++++..-|..
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~t 96 (624)
T 2ioq_A 75 TLTISDNGVGMTRDEVIDHLGT 96 (624)
T ss_dssp EEEEEECSCCCCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999997765543
No 191
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=90.31 E-value=1.2 Score=41.43 Aligned_cols=41 Identities=17% Similarity=0.066 Sum_probs=33.3
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
..++++++++...+..+...++..|+.+..+.+..+....+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l 45 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEML 45 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH
Confidence 35789999999999999999999999998887776554333
No 192
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=90.25 E-value=1.9 Score=46.16 Aligned_cols=82 Identities=22% Similarity=0.138 Sum_probs=61.2
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC-----HHHHHHHHhhhhccCCC
Q 042553 1014 AEINLRHLGATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN-----GYEATRKIREEEKRNQV 1086 (1131)
Q Consensus 1014 l~~~L~~~g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md-----G~e~~r~IR~~~~~~~~ 1086 (1131)
....|.+.|+.|. ++.|...|-.+..- .++.| |.+..|.-. -+++++.|++. .
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~--------------G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~-----~ 186 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAEI--------------GCIAV-MPLAGLIGSGLGICNPYNLRIILEE-----A 186 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHHS--------------CCSEE-EECSSSTTCCCCCSCHHHHHHHHHH-----C
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHh--------------CCCEE-EeCCccCCCCCCcCCHHHHHHHHhc-----C
Confidence 4556777899977 56677766666543 46766 776666322 27889999874 3
Q ss_pred CccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1087 HIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1087 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++|||+=.+-..+++..+|++.|+|+.+.
T Consensus 187 ~vPVI~eGGI~TPsDAa~AmeLGAdgVlV 215 (265)
T 1wv2_A 187 KVPVLVDAGVGTASDAAIAMELGCEAVLM 215 (265)
T ss_dssp SSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 68999877778899999999999999864
No 193
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=90.24 E-value=0.39 Score=48.61 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=34.3
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
..++++++|++..+..+..+|+..|+.+..+.+..+....+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~ 47 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLA 47 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 35799999999999999999999999998888877654433
No 194
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=90.20 E-value=0.85 Score=43.05 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=35.2
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~ 743 (1131)
..++++++++...+..+..+++..|..+..+.+..++...++
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~ 48 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG 48 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHh
Confidence 357899999999999999999999999988888877655554
No 195
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=90.10 E-value=1 Score=42.16 Aligned_cols=39 Identities=3% Similarity=0.037 Sum_probs=30.6
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeee-ecccHHHHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVS-AVSRWERLHSTL 742 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~l~~~l 742 (1131)
++++++++...+..+..+++..|+.+. .+.+..+....+
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~ 42 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRV 42 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHH
Confidence 688999999999999999999998886 566655444333
No 196
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=89.81 E-value=0.6 Score=53.21 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHhhccCCC---eEEEEE
Q 042553 486 DRVKLKQILSNLLSNAVKFTSEG---HISVRA 514 (1131)
Q Consensus 486 D~~rL~QIL~NLL~NAiKfT~~G---~I~v~~ 514 (1131)
|+..|..++.-||+||+...-.| .|.|.+
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i 58 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEV 58 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEE
Confidence 67789999999999999853322 455554
No 197
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=89.49 E-value=0.71 Score=43.14 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=33.7
Q ss_pred CCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHH
Q 042553 701 EGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHS 740 (1131)
Q Consensus 701 ~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~ 740 (1131)
.+.+++++++++..+..+..+++..|+.+..+.+..+...
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~ 45 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALE 45 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHH
Confidence 3568999999999999999999999999988877765443
No 198
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=89.46 E-value=1.7 Score=39.71 Aligned_cols=40 Identities=8% Similarity=0.110 Sum_probs=31.2
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCe-eeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGIN-VSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~l~~~l 742 (1131)
.+++++++++..+..+...++..|+. +..+.+..+....+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~ 43 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKY 43 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHH
Confidence 46889999999999999999999998 44666666554444
No 199
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=89.44 E-value=0.23 Score=53.54 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=37.6
Q ss_pred EEEEEecCCCCCcchHhhhccCCee-----------c--CC-CCCCcccchHHHHHHHHHhCCEEEEEeecCCCccE
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYVQ-----------V--KE-GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGT 630 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~q-----------~--~~-~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt 630 (1131)
.|.|.|+|+||+++++...|.+..+ . +. .-|--|+||.-+-. ..-++.|.++..+..|.
T Consensus 108 ~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~----Vadkv~V~Sr~~~~~g~ 180 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVTVITKHNDDEQY 180 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECTTSCEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc----cCCeEEEEEcCCCCceE
Confidence 5899999999999998766543211 0 11 12456889876532 23488888876543443
No 200
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=89.28 E-value=1.9 Score=40.32 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=32.5
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++++...+..+...++..|+.+..+.+..+....+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~ 43 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKA 43 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHH
Confidence 4788999999999999999999999988887776554433
No 201
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=89.27 E-value=1.9 Score=39.53 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=32.3
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.+++++++++..+..+...++..|+.+..+.+..+....+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~ 41 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIA 41 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHH
Confidence 3688899999999999999999999988877766554433
No 202
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=89.20 E-value=2.6 Score=39.24 Aligned_cols=113 Identities=12% Similarity=0.168 Sum_probs=68.3
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHHhhhcCCCccccCCCCCCCCCCcCCCCccCCcccccccc
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLSA 782 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1131)
.++++++++...+..+..+++ .|+.+..+.+..+....+...
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~------------------------------------- 46 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH------------------------------------- 46 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS-------------------------------------
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC-------------------------------------
Confidence 478899999999999999998 899999888877655444321
Q ss_pred cccchhhhccccccCCCceEEEEecCCCcchHHHHHHHHHHhhhcc-cceeEEEccCCCccccccCCCccccCCCCCccc
Q 042553 783 MEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQ-CNCKVVWLDKPTSRSINFDGLEDETMDPNDDVL 861 (1131)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~il~vid~~~~~~~~~~~~~~~~~~~~~-~~~~vv~l~~~~~~~i~~~~l~~~~~~~~~~~l 861 (1131)
.+. ++++|.... .....+.+..+++... ..++++.+........ ......+.+.++
T Consensus 47 ---------------~~d--lvi~d~~l~-~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~-----~~~~~~g~~~~l 103 (133)
T 3nhm_A 47 ---------------PPD--VLISDVNMD-GMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE-----GPADQPVPDAYL 103 (133)
T ss_dssp ---------------CCS--EEEECSSCS-SSCHHHHHHHHHHSTTTTTCCEEEEESCCC----------TTSCCCSEEE
T ss_pred ---------------CCC--EEEEeCCCC-CCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH-----HHHhhcCCceEE
Confidence 111 233333221 1233445555554322 2456666554332211 122233567899
Q ss_pred cccccchhHHHHHhh
Q 042553 862 LKPFHGSRLYKVIKL 876 (1131)
Q Consensus 862 ~kP~~~s~l~~~l~~ 876 (1131)
.||+....|...+..
T Consensus 104 ~KP~~~~~l~~~i~~ 118 (133)
T 3nhm_A 104 VKPVKPPVLIAQLHA 118 (133)
T ss_dssp ESSCCHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHH
Confidence 999999999988865
No 203
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=89.16 E-value=1 Score=51.79 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=30.5
Q ss_pred EEEEEecCCCCCcch--------HhhhccC-CeecC------CCCCC-cccchHHHHHHHH
Q 042553 568 TFEVDDTGKGIPKEK--------RKTVFEN-YVQVK------EGEGG-TGLGLGIVQSLVR 612 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~--------~~~IFe~-F~q~~------~~~~G-tGLGLsIvk~Lv~ 612 (1131)
.|+|.|+|.|||.+. .+-+|.. ....+ .-.+| .|.||+.|..+-+
T Consensus 87 ~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS~ 147 (400)
T 1zxm_A 87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 147 (400)
T ss_dssp EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeEEecc
Confidence 589999999999987 5557763 22111 01234 6999998887743
No 204
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=89.16 E-value=1.5 Score=40.56 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=30.3
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
.+++++++++..+..+...++..|+.+..+.+..+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~ 39 (126)
T 1dbw_A 4 YTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAF 39 (126)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHH
Confidence 478999999999999999999999998877766543
No 205
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=89.15 E-value=2.9 Score=43.38 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=69.8
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHHhhhcCCCccccCCCCCCCCCCcCCCCccCCcccccccc
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLSA 782 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1131)
.++++++|++..+..+...|+..|+.+..+.+..+....+...
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~------------------------------------- 50 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN------------------------------------- 50 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS-------------------------------------
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhC-------------------------------------
Confidence 4789999999999999999999999998888776654433221
Q ss_pred cccchhhhccccccCCCceEEEEecCCCcchHHHHHHHHHHhhhcccceeEEEccCCCccccccCCCccccCCCCCcccc
Q 042553 783 MEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLL 862 (1131)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~il~vid~~~~~~~~~~~~~~~~~~~~~~~~~vv~l~~~~~~~i~~~~l~~~~~~~~~~~l~ 862 (1131)
.|.++ ++|.... .....+.+..++... ..++++.+......... ......+.++++.
T Consensus 51 ---------------~~dlv--llD~~l~-~~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~----~~~~~~ga~~~l~ 107 (233)
T 1ys7_A 51 ---------------RPDAI--VLDINMP-VLDGVSVVTALRAMD-NDVPVCVLSARSSVDDR----VAGLEAGADDYLV 107 (233)
T ss_dssp ---------------CCSEE--EEESSCS-SSCHHHHHHHHHHTT-CCCCEEEEECCCTTTCC----CTTTTTTCSEEEE
T ss_pred ---------------CCCEE--EEeCCCC-CCCHHHHHHHHHhcC-CCCCEEEEEcCCCHHHH----HHHHHcCCCEEEe
Confidence 12222 2332221 112334444444322 34666666544332211 1223346688999
Q ss_pred ccccchhHHHHHhh
Q 042553 863 KPFHGSRLYKVIKL 876 (1131)
Q Consensus 863 kP~~~s~l~~~l~~ 876 (1131)
||+....|...+..
T Consensus 108 Kp~~~~~L~~~i~~ 121 (233)
T 1ys7_A 108 KPFVLAELVARVKA 121 (233)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999888865
No 206
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=89.03 E-value=0.96 Score=42.91 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=72.4
Q ss_pred CeEEEEEeCHHHHHHHHHHHHH-cCCeeeecccHHHHHHHHHHhhhcCCCccccCCCCCCCCCCcCCCCccCCccccccc
Q 042553 703 SHVVLLIANEERRRIAQKFMEN-LGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLS 781 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1131)
.++++++++...+..+..+|+. .|+.+..+.+..++...+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~------------------------------------- 47 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKD------------------------------------- 47 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTT-------------------------------------
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhc-------------------------------------
Confidence 5789999999999999999999 99999888877654321100
Q ss_pred ccccchhhhccccccCCCceEEEEecCCCcchHHHHHHHHHHhhh-cccceeEEEccCCCccccccCCCccccCCCCCcc
Q 042553 782 AMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRD-LQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDV 860 (1131)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~il~vid~~~~~~~~~~~~~~~~~~~-~~~~~~vv~l~~~~~~~i~~~~l~~~~~~~~~~~ 860 (1131)
...+ .++++|............+..++.. ....++++.+......... ......+.+.+
T Consensus 48 --------------~~~~--dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~----~~~~~~g~~~~ 107 (140)
T 3lua_A 48 --------------LDSI--TLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYR----HAALKFKVSDY 107 (140)
T ss_dssp --------------CCCC--SEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHH----HHHHHSCCSEE
T ss_pred --------------CCCC--cEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHH----HHHHHcCCCEE
Confidence 0112 2344454432134455566666652 2235666666543322111 11122356789
Q ss_pred ccccccchhHHHHHhhc
Q 042553 861 LLKPFHGSRLYKVIKLL 877 (1131)
Q Consensus 861 l~kP~~~s~l~~~l~~l 877 (1131)
+.||+....|...+..+
T Consensus 108 l~KP~~~~~l~~~i~~~ 124 (140)
T 3lua_A 108 ILKPYPTKRLENSVRSV 124 (140)
T ss_dssp EESSCCTTHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHH
Confidence 99999999999988753
No 207
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=89.01 E-value=1.7 Score=41.27 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=33.7
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++++...+..+..+++..|+.+..+.+..+....+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~ 43 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIF 43 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH
Confidence 4688999999999999999999999999888877655444
No 208
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=88.87 E-value=1.1 Score=42.39 Aligned_cols=116 Identities=11% Similarity=0.140 Sum_probs=70.7
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHHhhhcCCCccccCCCCCCCCCCcCCCCccCCcccccccc
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLSA 782 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1131)
.++++++++...+..+..+|+..|+.+..+.+..++.. .+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~---~l------------------------------------- 46 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMR---QQ------------------------------------- 46 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTT---SC-------------------------------------
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHH---HH-------------------------------------
Confidence 47889999999999999999999999887776654311 00
Q ss_pred cccchhhhccccccCCCceEEEEecCCCcch-HHHHHHHHHHhhhcccceeEEEccCCCccccccCCCccccCCCCCccc
Q 042553 783 MEGTEHKLQGYKRRGAPSFILLVIDATAGPF-LELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVL 861 (1131)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~il~vid~~~~~~-~~~~~~~~~~~~~~~~~~~vv~l~~~~~~~i~~~~l~~~~~~~~~~~l 861 (1131)
. ...+.++++|...... ....+.+..+++.. ..++++.+......... ......+.+.++
T Consensus 47 ------------~--~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~-~~~~ii~~s~~~~~~~~----~~~~~~ga~~~l 107 (136)
T 3kto_A 47 ------------I--SDDAIGMIIEAHLEDKKDSGIELLETLVKRG-FHLPTIVMASSSDIPTA----VRAMRASAADFI 107 (136)
T ss_dssp ------------C--CTTEEEEEEETTGGGBTTHHHHHHHHHHHTT-CCCCEEEEESSCCHHHH----HHHHHTTCSEEE
T ss_pred ------------h--ccCCCEEEEeCcCCCCCccHHHHHHHHHhCC-CCCCEEEEEcCCCHHHH----HHHHHcChHHhe
Confidence 0 0113344555443220 34455566665432 45566666544332111 111223567899
Q ss_pred cccccchhHHHHHhhc
Q 042553 862 LKPFHGSRLYKVIKLL 877 (1131)
Q Consensus 862 ~kP~~~s~l~~~l~~l 877 (1131)
.||+....|...+..+
T Consensus 108 ~KP~~~~~l~~~i~~~ 123 (136)
T 3kto_A 108 EKPFIEHVLVHDVQQI 123 (136)
T ss_dssp ESSBCHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHH
Confidence 9999999999888653
No 209
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=88.67 E-value=1.8 Score=40.61 Aligned_cols=40 Identities=8% Similarity=0.093 Sum_probs=32.9
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++++...+..+..+++..|+.+..+.+..+....+
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~ 43 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKI 43 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHH
Confidence 3688999999999999999999999998888776654444
No 210
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=88.44 E-value=0.57 Score=49.61 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=30.2
Q ss_pred EEEEEecCCCCCcch-------HhhhccCCeec---CC----CCCC-cccchHHHHHHHHHh
Q 042553 568 TFEVDDTGKGIPKEK-------RKTVFENYVQV---KE----GEGG-TGLGLGIVQSLVRLM 614 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~-------~~~IFe~F~q~---~~----~~~G-tGLGLsIvk~Lv~~~ 614 (1131)
.|+|.|+|.|||.+. .+-+|-..... +. ..+| .|.|++.|..|-+.+
T Consensus 73 ~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~~l 134 (226)
T 4emv_A 73 SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWL 134 (226)
T ss_dssp CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEEEE
T ss_pred eEEEEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhhhcccce
Confidence 489999999999998 66677432221 11 1233 699999887766533
No 211
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=88.19 E-value=2.8 Score=39.57 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=32.5
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++++...+..+...++..|..+..+.+..+....+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l 50 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAY 50 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHH
Confidence 4688999999999999999999999888887776554433
No 212
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=88.15 E-value=1.5 Score=40.90 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=29.9
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCe-eeecccHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGIN-VSAVSRWERLH 739 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~l~ 739 (1131)
..++++++++...+..+..+++..|+. +..+.+..+..
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~ 43 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAW 43 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHH
Confidence 357899999999999999999999985 66666655443
No 213
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=88.09 E-value=2.2 Score=40.25 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=32.5
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.+++++++++..+..+...++..|+.+..+.+..+....+
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 43 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEAL 43 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHH
Confidence 3688999999999999999999999988887766554433
No 214
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=87.94 E-value=0.91 Score=44.13 Aligned_cols=40 Identities=8% Similarity=0.134 Sum_probs=33.8
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHST 741 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~ 741 (1131)
..++++++++...+..+..+|+..|+.+..+.+..++...
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~ 46 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRF 46 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHH
Confidence 4579999999999999999999999999888877665433
No 215
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=87.73 E-value=3.2 Score=37.99 Aligned_cols=41 Identities=7% Similarity=0.171 Sum_probs=33.9
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~ 743 (1131)
.++++++++...+..+...++..|+.+..+.+..+....++
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~ 46 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR 46 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH
Confidence 36889999999999999999999999988888776654443
No 216
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=87.70 E-value=1.1 Score=42.89 Aligned_cols=42 Identities=5% Similarity=-0.063 Sum_probs=34.8
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~ 743 (1131)
..++++++++...+..+...|+..|+.+..+.+..++...+.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~ 49 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAV 49 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHH
Confidence 457889999999999999999999999998888776655443
No 217
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=87.64 E-value=1.7 Score=41.88 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=33.2
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHS 740 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~ 740 (1131)
..++++++++...+..+...++..|+.+..+.+..++..
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~ 45 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALE 45 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHH
Confidence 467999999999999999999999999988887765543
No 218
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=87.55 E-value=2.7 Score=37.85 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=73.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCC-CCCCHHHHHHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEM-PIMNGYEATRKI 1077 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~M-P~mdG~e~~r~I 1077 (1131)
+.||+|-.|-..-..++.++....|.+.....-. .....|+|++...+ |. .|
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~-------------------~e~~AdlIfCEYlLLPe--------~i 65 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK-------------------QELSADLVVCEYSLLPR--------EI 65 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC-------------------CCTTEEEEEEEGGGSCT--------TC
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccC-------------------CcccceeEEEeeecChH--------Hh
Confidence 5689998888877788888877788888764321 11357999998654 32 23
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+...- ....-+|+|-.--+++...+.++.|+. ||..|++.+-|.++|+..
T Consensus 66 fS~k~--~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraF 115 (121)
T 3q7r_A 66 RSPKS--LEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLF 115 (121)
T ss_dssp CCCTT--CCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHH
T ss_pred cCCCC--CCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHH
Confidence 33211 123346666666678889999999999 999999999999999863
No 219
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=87.48 E-value=1.4 Score=41.38 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=33.7
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCC--eeeecccHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGI--NVSAVSRWERLHSTL 742 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~--~~~~~~~~~~l~~~l 742 (1131)
+.++++++++...+..+...|+..|. .+..+.+..++...+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l 44 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYL 44 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHH
Confidence 35789999999999999999999998 888888877654443
No 220
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=87.48 E-value=0.41 Score=50.54 Aligned_cols=47 Identities=26% Similarity=0.553 Sum_probs=28.5
Q ss_pred EEEEEecCCCCCcchH--------hhhccCCeec---CC----CCCC-cccchHHHHHHHHHh
Q 042553 568 TFEVDDTGKGIPKEKR--------KTVFENYVQV---KE----GEGG-TGLGLGIVQSLVRLM 614 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~--------~~IFe~F~q~---~~----~~~G-tGLGLsIvk~Lv~~~ 614 (1131)
.|+|.|+|.|||.+.. +-+|-..... +. ..+| .|.||+.|..|-+.+
T Consensus 68 ~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~~l 130 (220)
T 4duh_A 68 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL 130 (220)
T ss_dssp CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEEEE
T ss_pred cEEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhcccccce
Confidence 4899999999999874 4556322111 11 1233 689999888776543
No 221
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=87.35 E-value=1.7 Score=39.65 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=32.0
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
++++++++...+..+...++..|+.+..+.+..+....+
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~ 40 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYL 40 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHH
Confidence 578888999999999999999999998888776654444
No 222
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=87.21 E-value=1.8 Score=40.69 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=32.4
Q ss_pred CCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 701 EGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 701 ~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
.+.+++++++++..+..+..+++.+|+.+..+.+..+.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a 43 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEEC 43 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHH
Confidence 35689999999999999999999999999888776654
No 223
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=87.21 E-value=2.6 Score=40.50 Aligned_cols=44 Identities=16% Similarity=-0.019 Sum_probs=33.0
Q ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHcCCe--eeecccHHHHHHHHH
Q 042553 700 HEGSHVVLLIANEERRRIAQKFMENLGIN--VSAVSRWERLHSTLK 743 (1131)
Q Consensus 700 ~~~~~vll~~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~l~~~l~ 743 (1131)
..+.++++++++...+..+..+++..|.. +..+.+..++...+.
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~ 58 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK 58 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH
Confidence 34678999999999999999999999954 446777766554443
No 224
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=87.18 E-value=2.1 Score=40.33 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=34.0
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHH-cCCe-eeecccHHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMEN-LGIN-VSAVSRWERLHSTLK 743 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~-~g~~-~~~~~~~~~l~~~l~ 743 (1131)
..++++++++...+..+..+|+. .|+. +..+.+..++...+.
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~ 51 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH 51 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH
Confidence 45789999999999999999998 9999 888888776554443
No 225
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=87.12 E-value=0.55 Score=57.36 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=18.6
Q ss_pred EEEEEecCCCCCcchHhhhccC
Q 042553 568 TFEVDDTGKGIPKEKRKTVFEN 589 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~ 589 (1131)
.|+|.|+|+||+++++..-|..
T Consensus 93 ~I~I~DnGiGMt~edl~~~l~t 114 (666)
T 2o1u_A 93 LLHVTDTGVGMTREELVKNLGT 114 (666)
T ss_dssp EEEEEECSCCCCHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhh
Confidence 5889999999999998776644
No 226
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=86.90 E-value=1.6 Score=41.44 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=69.0
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHHhhhcCCCccccCCCCCCCCCCcCCCCccCCcccccccc
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLSA 782 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1131)
.++++++++...+..+..+++..|+.+..+.+..+....+..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-------------------------------------- 46 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR-------------------------------------- 46 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT--------------------------------------
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--------------------------------------
Confidence 478899999999999999999999999888777654433311
Q ss_pred cccchhhhccccccCCCceEEEEecCCCcchHHHHHHHHHHhhhcccceeEEEccCCCccccccCCCccccCCCCCcccc
Q 042553 783 MEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLL 862 (1131)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~il~vid~~~~~~~~~~~~~~~~~~~~~~~~~vv~l~~~~~~~i~~~~l~~~~~~~~~~~l~ 862 (1131)
..+ .++++|. . +.......+..+++.. ..++++.+......... ......+...++.
T Consensus 47 --------------~~~--dlvi~d~-~-~~~~g~~~~~~l~~~~-~~~pii~ls~~~~~~~~----~~~~~~g~~~~l~ 103 (142)
T 2qxy_A 47 --------------EKI--DLVFVDV-F-EGEESLNLIRRIREEF-PDTKVAVLSAYVDKDLI----INSVKAGAVDYIL 103 (142)
T ss_dssp --------------SCC--SEEEEEC-T-TTHHHHHHHHHHHHHC-TTCEEEEEESCCCHHHH----HHHHHHTCSCEEE
T ss_pred --------------cCC--CEEEEeC-C-CCCcHHHHHHHHHHHC-CCCCEEEEECCCCHHHH----HHHHHCCcceeEe
Confidence 012 2334444 2 2233445555555432 24566665443322110 0111225578999
Q ss_pred ccccchhHHHHHhh
Q 042553 863 KPFHGSRLYKVIKL 876 (1131)
Q Consensus 863 kP~~~s~l~~~l~~ 876 (1131)
||+....|...+..
T Consensus 104 kP~~~~~l~~~i~~ 117 (142)
T 2qxy_A 104 KPFRLDYLLERVKK 117 (142)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999888865
No 227
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=86.79 E-value=0.81 Score=48.57 Aligned_cols=78 Identities=6% Similarity=0.090 Sum_probs=50.9
Q ss_pred CCCCCchhhhhhhcCCCCccccccccccccCceEEEeeeec-CC--CceEEecccccccccccceeeecCcEEEEEecCc
Q 042553 149 SSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGIN-GT--RGAVSLGFPVKPITNLFAGINLYGGRLSIATNDG 225 (1131)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~--~g~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~g 225 (1131)
.+..+++||+.+++......+ ..+. ..+...+..++.|. ++ .|++.+.+..+.+.+.+. -.++.+++.+.+|
T Consensus 99 ~~~~~r~~~~~a~~~~~~~~~-~~~~-~~g~~~i~~~~pi~~~g~~~Gvv~~~i~l~~l~~~~~---~~~g~~~l~d~~G 173 (260)
T 3by9_A 99 RNFAWRPYFYLSIAGQKSQYF-ALGS-TSGQRGYYYAYPVIYAAEILGVIVVKMDLSAIEQGWQ---NKSSYFVATDDHQ 173 (260)
T ss_dssp CBCTTSHHHHHHTTTSCEEEE-EECT-TTCCEEEEEEEEEEETTEEEEEEEEEECSHHHHHTCC---CSSCEEEEECTTC
T ss_pred CccccCHHHHHHHhCCCceEE-EEec-CCCCEEEEEEEEEccCCeEEEEEEEEEeHHHHHHHHh---cCCCcEEEECCCC
Confidence 346778999999875443221 1111 11233444555553 22 378788888888887776 3678999999999
Q ss_pred eEEEec
Q 042553 226 KVLVQG 231 (1131)
Q Consensus 226 ~~l~~~ 231 (1131)
.+++++
T Consensus 174 ~ii~~~ 179 (260)
T 3by9_A 174 VVFMSS 179 (260)
T ss_dssp BEEEES
T ss_pred eEEEcC
Confidence 999975
No 228
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=86.67 E-value=2.3 Score=38.95 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=32.0
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.+++++++++..+..+...++..|+.+..+.+..+....+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~ 42 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM 42 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHH
Confidence 3688899999999999999999999988877766544333
No 229
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=86.56 E-value=2.3 Score=39.03 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=32.3
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.+++++++++..+..+...++..|+.+..+.+..+....+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~ 43 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL 43 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHH
Confidence 3688899999999999999999999988887776554443
No 230
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=86.55 E-value=2 Score=41.28 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=34.0
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCC--eeeecccHHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGI--NVSAVSRWERLHSTLK 743 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~--~~~~~~~~~~l~~~l~ 743 (1131)
.+++++++++..+..+...++..|. .+..+.+..+....++
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~ 47 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLF 47 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHh
Confidence 4789999999999999999999998 7888888776655443
No 231
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=86.47 E-value=2.8 Score=43.27 Aligned_cols=40 Identities=8% Similarity=-0.001 Sum_probs=32.7
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++|++..+..+...|+..|+.+..+.+..+....+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~ 42 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMA 42 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
Confidence 3688999999999999999999999998887776554433
No 232
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.35 E-value=1.7 Score=41.22 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=32.6
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~ 743 (1131)
++++++++...+..+..+++..|+.+..+.+..+....+.
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~ 45 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIE 45 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHH
Confidence 6888999999999999999999999888877766554443
No 233
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=86.20 E-value=1.6 Score=49.76 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=34.2
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~ 743 (1131)
++++++|++..+..+..+|+..|+.+..+.+..+....++
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~ 41 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIK 41 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH
Confidence 6889999999999999999999999998888876655443
No 234
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=86.08 E-value=2.7 Score=42.88 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=33.4
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeee-ecccHHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVS-AVSRWERLHSTLK 743 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~l~~~l~ 743 (1131)
.++++++|++..+..+..+|+..|+.+. .+.+..+....+.
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~ 55 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE 55 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 4789999999999999999999999987 7777766554443
No 235
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=86.06 E-value=2.4 Score=40.15 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=34.5
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCC--eeeecccHHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGI--NVSAVSRWERLHSTLK 743 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~--~~~~~~~~~~l~~~l~ 743 (1131)
..++++++++...+..+..+|+..|+ .+..+.+..+....+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~ 49 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLY 49 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHH
Confidence 45789999999999999999999998 7888888776554443
No 236
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=85.95 E-value=1.3 Score=42.35 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=31.7
Q ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHcC-CeeeecccHHH
Q 042553 700 HEGSHVVLLIANEERRRIAQKFMENLG-INVSAVSRWER 737 (1131)
Q Consensus 700 ~~~~~vll~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~ 737 (1131)
..+.++++++++...+..+..+|+..| +.+..+.+..+
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~ 56 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAA 56 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 345789999999999999999999999 98887766553
No 237
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=85.88 E-value=1.7 Score=44.41 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=30.6
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
.++++++|++..+..+..+++..|+.+..+.+..+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a 40 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTF 40 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHH
Confidence 478999999999999999999999998887776543
No 238
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=85.52 E-value=3 Score=37.90 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=31.8
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
++++++++...+..+...++..|+.+..+.+..+....+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~ 41 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF 41 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHH
Confidence 588889999999999999999999998887776654443
No 239
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=85.40 E-value=0.51 Score=44.66 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=29.6
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcC-CeeeecccHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLG-INVSAVSRWE 736 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~ 736 (1131)
..+++++++++..+..+..+++..| +.+..+.+..
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~ 49 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDD 49 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGG
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHH
Confidence 3578899999999999999999999 9888776554
No 240
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=85.23 E-value=1.5 Score=42.31 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.9
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERL 738 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l 738 (1131)
+.++++++++...+..+...++..|+.+..+.+..+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a 39 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEA 39 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHH
Confidence 3578899999999999999999999999888776553
No 241
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=84.71 E-value=2.3 Score=39.93 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=33.5
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++++...+..+...|+..|+.+..+.+..++...+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l 43 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVL 43 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH
Confidence 4688999999999999999999999999888877655444
No 242
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=84.31 E-value=6.4 Score=41.59 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=60.8
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC------CCCCCHHHHHHHHhhhhccCCC
Q 042553 1014 AEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE------MPIMNGYEATRKIREEEKRNQV 1086 (1131)
Q Consensus 1014 l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~------MP~mdG~e~~r~IR~~~~~~~~ 1086 (1131)
+...+++.|..+. .+.+.++|..+.+. .+|+|..-.. .+...++++++++++.
T Consensus 121 ~i~~~~~~g~~v~~~v~t~eea~~a~~~--------------Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~------ 180 (229)
T 3q58_A 121 LLTRIRLHGLLAMADCSTVNEGISCHQK--------------GIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA------ 180 (229)
T ss_dssp HHHHHHHTTCEEEEECSSHHHHHHHHHT--------------TCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT------
T ss_pred HHHHHHHCCCEEEEecCCHHHHHHHHhC--------------CCCEEEecCccCCCCCcCCCCCHHHHHHHHHc------
Confidence 3344456687654 57889998887765 4788854221 2334568999999752
Q ss_pred CccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1087 HIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1087 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++|+|+-.+-.+.++..+++++|+|+++.
T Consensus 181 ~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 181 GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 58999999988999999999999999974
No 243
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=84.19 E-value=2.3 Score=40.81 Aligned_cols=40 Identities=8% Similarity=-0.071 Sum_probs=31.7
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcC--CeeeecccHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLG--INVSAVSRWERLHST 741 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~l~~~ 741 (1131)
-.++++++++...+..+..+++..| ..+..+.+..++...
T Consensus 20 m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~ 61 (150)
T 4e7p_A 20 HMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQL 61 (150)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHH
Confidence 3578899999999999999999888 677777777655433
No 244
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=84.12 E-value=2.1 Score=40.52 Aligned_cols=40 Identities=13% Similarity=0.331 Sum_probs=32.6
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.+++++++++..+..+..+++..|+.+..+.+..+....+
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~ 44 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKI 44 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
Confidence 4688999999999999999999999988887776554433
No 245
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=84.11 E-value=1.6 Score=45.21 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHHhhccC---CCeEEEEE
Q 042553 486 DRVKLKQILSNLLSNAVKFTS---EGHISVRA 514 (1131)
Q Consensus 486 D~~rL~QIL~NLL~NAiKfT~---~G~I~v~~ 514 (1131)
+...|..++.-||+||+...- ...|.|.+
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i 59 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVI 59 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEE
Confidence 566788888888888887532 34566654
No 246
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=84.09 E-value=0.54 Score=52.27 Aligned_cols=80 Identities=11% Similarity=0.188 Sum_probs=52.4
Q ss_pred CCCCCchhhhhhhcCCCCccccccccccccCceEEEeeeec-CC--CceEEecccccccccccceeeecCcEEEEEecCc
Q 042553 149 SSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGIN-GT--RGAVSLGFPVKPITNLFAGINLYGGRLSIATNDG 225 (1131)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~--~g~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~g 225 (1131)
.+..+++||++|++...+.. ...+.. .+...+..++.|. ++ .|++.+.+..+.+.+.+.. .++.+++.+.+|
T Consensus 140 ~d~~~R~yf~~Al~g~~~~~-~~~~~~-tg~~~i~~a~PV~~~G~viGVv~v~i~l~~l~~~~~~---~~g~~~l~D~~G 214 (305)
T 3e4o_A 140 NDYAFRDYFRLAVRDGMAEH-FAMGTV-SKRPGLYISRRVDGPGGPLGVIVAKLEFDGVEADWQA---SGKPAYVTDRRG 214 (305)
T ss_dssp CBCTTSHHHHHHHHHSEEEE-EEECTT-TCCEEEEEEEEEEETTEEEEEEEEEECCHHHHHHHHH---HTSCEEEECTTC
T ss_pred CCccccHHHHHHHhcCCcEE-EEEecC-CCCEEEEEEEEEccCCeEEEEEEEEEcHHHHHHHHhc---CCceEEEEcCCC
Confidence 35678999999998544321 111211 2233344555553 22 3788888888888887653 678999999999
Q ss_pred eEEEecCC
Q 042553 226 KVLVQGIP 233 (1131)
Q Consensus 226 ~~l~~~~~ 233 (1131)
.+++.+-+
T Consensus 215 ~ii~~~~~ 222 (305)
T 3e4o_A 215 IVLITSLP 222 (305)
T ss_dssp BEEEESSG
T ss_pred eEEEeCCh
Confidence 99997543
No 247
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=83.82 E-value=2.7 Score=44.77 Aligned_cols=40 Identities=5% Similarity=0.034 Sum_probs=33.4
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++|++..+..+..+|+..|+.+..+.+..+....+
T Consensus 38 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~ 77 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKA 77 (249)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 5799999999999999999999999988888877654433
No 248
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=83.76 E-value=4 Score=38.12 Aligned_cols=39 Identities=5% Similarity=0.026 Sum_probs=29.2
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcC--CeeeecccHHHHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLG--INVSAVSRWERLHSTL 742 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~l~~~l 742 (1131)
+++++++++..+..+...++..| ..+..+.+..+....+
T Consensus 5 ~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~ 45 (133)
T 3b2n_A 5 SLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLI 45 (133)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHH
Confidence 58888889999999999999887 4556666666554444
No 249
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=83.61 E-value=3.3 Score=38.19 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=29.9
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCC-eeeecccHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGI-NVSAVSRWERLH 739 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~l~ 739 (1131)
.++++++++...+..+...++..|+ .+..+.+..+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~ 42 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL 42 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHH
Confidence 4688999999999999999999998 677777665543
No 250
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=83.33 E-value=4.2 Score=38.29 Aligned_cols=40 Identities=8% Similarity=0.148 Sum_probs=33.2
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCC--eeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGI--NVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~--~~~~~~~~~~l~~~l 742 (1131)
.++++++++...+..+...++..|. .+..+.+..++...+
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l 49 (143)
T 2qvg_A 8 VDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDML 49 (143)
T ss_dssp CSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHH
Confidence 4689999999999999999999998 888888877655444
No 251
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=82.84 E-value=2.3 Score=40.44 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=31.6
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCe--eeecccHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGIN--VSAVSRWERLHS 740 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~l~~ 740 (1131)
..++++++++...+..+..+++..|.. +..+.+..++..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~ 45 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALY 45 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHH
Confidence 357889999999999999999999987 777777665443
No 252
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=82.47 E-value=3.1 Score=38.48 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=31.7
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCC-eeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGI-NVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~l~~~l 742 (1131)
.+++++++++..+..+...++..|+ .+..+.+..+....+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~ 47 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIM 47 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHH
Confidence 4688999999999999999999998 677777766554433
No 253
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=82.46 E-value=11 Score=36.20 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=71.8
Q ss_pred eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCC--HHHHHHHHhh
Q 042553 1005 DDSMMLRRVAEINLRHLGATVE---ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMN--GYEATRKIRE 1079 (1131)
Q Consensus 1005 dD~~~~~~~l~~~L~~~g~~v~---~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~md--G~e~~r~IR~ 1079 (1131)
|-|.+-..++..+|+..||+|. .....++.++.+.+. .+|+|.+-..|..-. --++++.+|+
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~-------------~~d~v~lS~~~~~~~~~~~~~i~~l~~ 80 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIET-------------KADAILVSSLYGQGEIDCKGLRQKCDE 80 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH-------------TCSEEEEEECSSTHHHHHTTHHHHHHH
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc-------------CCCEEEEEecCcCcHHHHHHHHHHHHh
Confidence 4455667789999999999988 456788888988874 699999988875321 1235666665
Q ss_pred hhccCCCCccEEEEcccC-----C-HHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1080 EEKRNQVHIPIIALTAHI-----S-GEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1080 ~~~~~~~~ipIIalTa~~-----~-~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
.. ..+++|++ .+.. + .+....+.++|+|.|..---+..+....+.
T Consensus 81 ~g---~~~i~v~v-GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~ 131 (137)
T 1ccw_A 81 AG---LEGILLYV-GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLK 131 (137)
T ss_dssp TT---CTTCEEEE-EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHH
T ss_pred cC---CCCCEEEE-ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHH
Confidence 42 12466654 4432 1 122456889999999876566666666554
No 254
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=82.39 E-value=0.86 Score=49.62 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=33.9
Q ss_pred EEEEEecCCCCCcchHhhhcc----C----Ce---e---cCC-CCCCcccchHHHHHHHHHhCCEEEEEeecCC
Q 042553 568 TFEVDDTGKGIPKEKRKTVFE----N----YV---Q---VKE-GEGGTGLGLGIVQSLVRLMGGDIEIVDKENG 626 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe----~----F~---q---~~~-~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~g 626 (1131)
.|.|.|+|+||+++++..-+- . |. + .+. .-|-.|+|+.=| =+.+-++.|.|+..+
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySa----f~vadkV~V~Sk~~~ 163 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSA----FLVADKVIVYTKNND 163 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGG----GGTEEEEEEEEECTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhh----ccccCEEEEEEecCC
Confidence 588999999999998764332 1 11 1 111 235678888543 223456788877654
No 255
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=82.28 E-value=7.1 Score=41.85 Aligned_cols=83 Identities=19% Similarity=0.103 Sum_probs=58.6
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH-----HHHHHHHhhhhccCCC
Q 042553 1014 AEINLRHLGATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG-----YEATRKIREEEKRNQV 1086 (1131)
Q Consensus 1014 l~~~L~~~g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG-----~e~~r~IR~~~~~~~~ 1086 (1131)
....|.+.||.|. +..|...|-.+..- .++.| |.+..|.-.| .++++.|++. ..
T Consensus 116 aa~~L~k~Gf~Vlpy~~~D~~~ak~l~~~--------------G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~----~~ 176 (268)
T 2htm_A 116 AAERLIEEDFLVLPYMGPDLVLAKRLAAL--------------GTATV-MPLAAPIGSGWGVRTRALLELFARE----KA 176 (268)
T ss_dssp HHHHHHHTTCEECCEECSCHHHHHHHHHH--------------TCSCB-EEBSSSTTTCCCSTTHHHHHHHHHT----TT
T ss_pred HHHHHHHCCCEEeeccCCCHHHHHHHHhc--------------CCCEE-EecCccCcCCcccCCHHHHHHHHHh----cC
Confidence 3455667899976 44666555444443 36665 8877765444 4568888763 13
Q ss_pred C-ccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1087 H-IPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1087 ~-ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+ +|||+=.+-..+++...+++.|+|+.+.
T Consensus 177 ~~vPVI~~GGI~tpsDAa~AmeLGAdgVlV 206 (268)
T 2htm_A 177 SLPPVVVDAGLGLPSHAAEVMELGLDAVLV 206 (268)
T ss_dssp TSSCBEEESCCCSHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5 8999877788899999999999999864
No 256
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=82.20 E-value=5.1 Score=37.10 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=29.9
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHc-CCeee-ecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENL-GINVS-AVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~-g~~~~-~~~~~~~l~~~l 742 (1131)
.++++++++...+..+..+++.. |+.+. .+.+..+....+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~ 44 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQML 44 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 36888889999999999999987 78765 566666554443
No 257
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=81.82 E-value=3.7 Score=39.38 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=32.1
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHH-cCCeee-ecccHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMEN-LGINVS-AVSRWERLHSTL 742 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~-~g~~~~-~~~~~~~l~~~l 742 (1131)
..++++++++...+..+..+++. .|+.+. .+.+..+....+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l 47 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLY 47 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHH
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHH
Confidence 35788999999999999999988 799887 677766554433
No 258
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=81.70 E-value=3.5 Score=39.57 Aligned_cols=40 Identities=8% Similarity=0.078 Sum_probs=32.3
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~ 743 (1131)
.+++++++++..+..+..+++. |+.+..+.+..+....+.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~ 44 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIK 44 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHH
Confidence 5789999999999999999975 999988888776654443
No 259
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=81.67 E-value=6.4 Score=36.92 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=32.3
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~ 743 (1131)
.++++++++...+..+..+++.. +.+..+.+..+....+.
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~ 43 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQID 43 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHh
Confidence 46889999999999999999888 88888887776655443
No 260
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=81.32 E-value=7.2 Score=36.88 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=24.4
Q ss_pred eEEEEEeCHHHHHHHHHHHH--HcCCeee-ecccHHH
Q 042553 704 HVVLLIANEERRRIAQKFME--NLGINVS-AVSRWER 737 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~--~~g~~~~-~~~~~~~ 737 (1131)
+++++++++..+..+...+. ..|+.+. .+.+..+
T Consensus 4 ~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 40 (141)
T 3cu5_A 4 RILIVDDEKLTRDGLIANINWKALSFDQIDQADDGIN 40 (141)
T ss_dssp EEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHH
Confidence 68888899888888888886 3567665 5555443
No 261
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=81.14 E-value=4 Score=42.78 Aligned_cols=40 Identities=3% Similarity=0.150 Sum_probs=32.8
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++|++..+..+..+|+..|+.+..+.+..+....+
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l 45 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAV 45 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
Confidence 3689999999999999999999999988887776554444
No 262
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=80.91 E-value=5.1 Score=38.35 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=31.3
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHc-CC-eeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENL-GI-NVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~-g~-~~~~~~~~~~l~~~l 742 (1131)
.++++++++...+..+...++.. |+ .+..+.+..+....+
T Consensus 4 ~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l 45 (154)
T 2qsj_A 4 TVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFL 45 (154)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHH
Confidence 36888999999999999999988 87 677777776654443
No 263
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=80.62 E-value=4.1 Score=42.20 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=33.2
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
.++++++|++..+..+...|+..|+.+..+.+..+....+
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~ 44 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEF 44 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
Confidence 3688999999999999999999999998888777655444
No 264
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=80.41 E-value=2.4 Score=39.06 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=29.4
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWER 737 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 737 (1131)
.++++++++...+..+...++..|+.+..+.+..+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~ 37 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDS 37 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHH
Confidence 36888999999999999999999999887776554
No 265
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=79.96 E-value=11 Score=39.71 Aligned_cols=83 Identities=16% Similarity=0.058 Sum_probs=60.5
Q ss_pred HHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC------CCCCCHHHHHHHHhhhhccCC
Q 042553 1013 VAEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE------MPIMNGYEATRKIREEEKRNQ 1085 (1131)
Q Consensus 1013 ~l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~------MP~mdG~e~~r~IR~~~~~~~ 1085 (1131)
-+...+++.|..+. .+.+.++|..+.+. .+|+|..-.. .+...++++++++++.
T Consensus 120 ~~i~~~~~~g~~v~~~v~t~eea~~a~~~--------------Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~----- 180 (232)
T 3igs_A 120 ALLARIHHHHLLTMADCSSVDDGLACQRL--------------GADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----- 180 (232)
T ss_dssp HHHHHHHHTTCEEEEECCSHHHHHHHHHT--------------TCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT-----
T ss_pred HHHHHHHHCCCEEEEeCCCHHHHHHHHhC--------------CCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc-----
Confidence 33444466687654 57888998887765 4788854221 1233468899998863
Q ss_pred CCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1086 VHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1086 ~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++|+|+-.+-.+.++..+++++|+|+++.
T Consensus 181 -~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 181 -GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp -TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred -CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 58999999988899999999999999964
No 266
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=79.69 E-value=5.5 Score=36.88 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=29.2
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWER 737 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 737 (1131)
.++++++++...+..+..+++..|..+..+.+.++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~ 38 (135)
T 3eqz_A 4 NRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRA 38 (135)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHH
Confidence 47889999999999999999988888877776654
No 267
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=79.52 E-value=5.7 Score=37.41 Aligned_cols=41 Identities=5% Similarity=0.016 Sum_probs=29.9
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHc-CCee-eecccHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENL-GINV-SAVSRWERLHSTL 742 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~-g~~~-~~~~~~~~l~~~l 742 (1131)
..++++++++...+..+...++.. |+.+ ..+.+..++...+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l 51 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFL 51 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 357899999999999999999887 7774 3566665544433
No 268
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=79.30 E-value=5.7 Score=45.43 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=33.0
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL 742 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l 742 (1131)
++++++|++..+..+..+|+..|+.+..+.+..+....+
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l 40 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL 40 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
Confidence 578899999999999999999999999888877655444
No 269
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=79.04 E-value=2.4 Score=43.88 Aligned_cols=38 Identities=16% Similarity=0.042 Sum_probs=31.7
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHST 741 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~ 741 (1131)
++++++|++..+..+..+|+..|+.+..+.+..++...
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~ 39 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYL 39 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHH
Confidence 47889999999999999999999999888877665433
No 270
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=79.00 E-value=4.4 Score=36.72 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=29.9
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLH 739 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~ 739 (1131)
++++++++...+..+...++..|+.+..+.+..+..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~ 38 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL 38 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHH
Confidence 578888999999999999999999988777765543
No 271
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=78.71 E-value=17 Score=38.92 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=69.8
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-CC
Q 042553 998 GKKILVA----DDSMMLRRVAEINLRHLGATVEA---CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-MN 1069 (1131)
Q Consensus 998 ~~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~---a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-md 1069 (1131)
+.+||++ |-|.+-..++..+|+..||+|.. -...++.++.+.+. .+|+|.+-..|+. +.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~-------------~~d~V~lS~l~~~~~~ 189 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKE-------------KPIMLTGTALMTTTMY 189 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHH-------------CCSEEEEECCCTTTTT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEEeeccCCHH
Confidence 4578887 77778888999999999999863 34667777777763 6999999887764 33
Q ss_pred H-HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECC
Q 042553 1070 G-YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117 (1131)
Q Consensus 1070 G-~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP 1117 (1131)
. -++++.+|+. ++++||++--+....+. +-+.|+|.|-.-.
T Consensus 190 ~~~~~i~~l~~~----~~~~~v~vGG~~~~~~~---~~~igad~~~~da 231 (258)
T 2i2x_B 190 AFKEVNDMLLEN----GIKIPFACGGGAVNQDF---VSQFALGVYGEEA 231 (258)
T ss_dssp HHHHHHHHHHTT----TCCCCEEEESTTCCHHH---HHTSTTEEECSST
T ss_pred HHHHHHHHHHhc----CCCCcEEEECccCCHHH---HHHcCCeEEECCH
Confidence 3 3466777764 34577776655544332 3478998776544
No 272
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=78.51 E-value=1.1 Score=47.61 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=34.0
Q ss_pred EEEEEecCCCCCcchHhhhcc--------CCee---cCC---CCCCcccchHHHHHHHHHhCCEEEEEeecCC
Q 042553 568 TFEVDDTGKGIPKEKRKTVFE--------NYVQ---VKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENG 626 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe--------~F~q---~~~---~~~GtGLGLsIvk~Lv~~~gG~I~v~s~~~g 626 (1131)
.|.|.|+|+||+++++..-+- .|.. ... .-|-.|+|+.-|-. ..-++.|.|+..+
T Consensus 87 ~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~----vadkv~V~Sk~~~ 155 (239)
T 3nmq_A 87 TLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL----VAEKVVVITKHND 155 (239)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc----cCCEEEEEEeeCC
Confidence 589999999999999743321 1211 111 12567899876522 2346788777543
No 273
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=78.07 E-value=3.5 Score=47.59 Aligned_cols=47 Identities=30% Similarity=0.562 Sum_probs=31.3
Q ss_pred EEEEEecCCCCCcchHhh--------hccCCeec---CC----CCCC-cccchHHHHHHHHHh
Q 042553 568 TFEVDDTGKGIPKEKRKT--------VFENYVQV---KE----GEGG-TGLGLGIVQSLVRLM 614 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~--------IFe~F~q~---~~----~~~G-tGLGLsIvk~Lv~~~ 614 (1131)
.|+|.|+|.|||.+..+. ||-..... +. -.+| .|.|.+.|.-|-+.+
T Consensus 99 sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~l 161 (418)
T 1pvg_A 99 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEF 161 (418)
T ss_dssp EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEE
T ss_pred EEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccceE
Confidence 588999999999886443 66443221 11 1234 699999888776554
No 274
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=76.03 E-value=4.6 Score=46.08 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=34.3
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~ 743 (1131)
.++++++|++..+..+..+|+..|+.+..+.+..+....++
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~ 46 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE 46 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh
Confidence 46889999999999999999999999988888776554443
No 275
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=75.57 E-value=5.7 Score=37.62 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=32.7
Q ss_pred CCCeEEEEEeCHHHHHHHHHHHHHc-CCeee-ecccHHHHHHHH
Q 042553 701 EGSHVVLLIANEERRRIAQKFMENL-GINVS-AVSRWERLHSTL 742 (1131)
Q Consensus 701 ~~~~vll~~~~~~~~~~~~~~l~~~-g~~~~-~~~~~~~l~~~l 742 (1131)
...+|++++|+...+..+..+++.. |+.+. .+.+..+....+
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l 55 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKL 55 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHH
Confidence 3467899999999999999999998 88864 677776654444
No 276
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=75.04 E-value=3.6 Score=47.23 Aligned_cols=47 Identities=26% Similarity=0.536 Sum_probs=26.1
Q ss_pred EEEEEecCCCCCcchH--------hhhccCCeec---CC----CCCC-cccchHHHHHHHHHh
Q 042553 568 TFEVDDTGKGIPKEKR--------KTVFENYVQV---KE----GEGG-TGLGLGIVQSLVRLM 614 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~--------~~IFe~F~q~---~~----~~~G-tGLGLsIvk~Lv~~~ 614 (1131)
.|+|.|+|.|||.+.. +-+|-..... +. ..+| .|.|++.|..|-+.+
T Consensus 83 sI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~l 145 (408)
T 3lnu_A 83 SCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTKV 145 (408)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHHHTEEEE
T ss_pred eEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceehhccCeE
Confidence 4899999999999874 4556332211 11 1234 699999887766544
No 277
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=73.62 E-value=6.8 Score=40.05 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=30.4
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcC-Cee-eecccHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLG-INV-SAVSRWERLHSTL 742 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g-~~~-~~~~~~~~l~~~l 742 (1131)
.++++++|++..+..+..+++..| +.+ ..+.+..+....+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~ 47 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELA 47 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Confidence 468899999999999999998875 776 5666666554444
No 278
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=73.24 E-value=2.8 Score=38.26 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=27.3
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWER 737 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 737 (1131)
+++++++++..+..+...++..|+.+..+.+..+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~ 38 (124)
T 1dc7_A 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNE 38 (124)
T ss_dssp CCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTH
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHH
Confidence 5788888888899999999888888877666544
No 279
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=73.02 E-value=15 Score=38.26 Aligned_cols=100 Identities=17% Similarity=0.112 Sum_probs=68.5
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEE--cCCCC-C
Q 042553 998 GKKILVA----DDSMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILM--DCEMP-I 1067 (1131)
Q Consensus 998 ~~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILm--Di~MP-~ 1067 (1131)
..+||+. |-|.+-..++..+|+..||+|..- ...++.++.+.+. .+|+|.+ -..|. .
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~-------------~~d~v~l~~S~l~~~~ 158 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKH-------------KGEKVLLVGSALMTTS 158 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHT-------------TTSCEEEEEECSSHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHc-------------CCCEEEEEchhcccCc
Confidence 3578887 777888889999999999998763 3567777888763 7999999 87775 2
Q ss_pred CCH-HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1068 MNG-YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1068 mdG-~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++. -++++.+|+.... .++||++=-+-...+ -+-+.|+|.|-.
T Consensus 159 ~~~~~~~i~~l~~~~~~--~~v~v~vGG~~~~~~---~a~~iGad~~~~ 202 (215)
T 3ezx_A 159 MLGQKDLMDRLNEEKLR--DSVKCMFGGAPVSDK---WIEEIGADATAE 202 (215)
T ss_dssp HTHHHHHHHHHHHTTCG--GGSEEEEESSSCCHH---HHHHHTCCBCCS
T ss_pred HHHHHHHHHHHHHcCCC--CCCEEEEECCCCCHH---HHHHhCCeEEEC
Confidence 332 3456667664211 157776655545443 344679998854
No 280
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=70.85 E-value=7.4 Score=37.11 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=30.2
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCC--eeeecccHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENLGI--NVSAVSRWERLHS 740 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~g~--~~~~~~~~~~l~~ 740 (1131)
.++++++++...+..+...++..|. .+..+.+..+...
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~ 48 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMA 48 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHH
Confidence 4688999999999999999998887 6777777665443
No 281
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=70.65 E-value=4.2 Score=43.32 Aligned_cols=79 Identities=14% Similarity=0.241 Sum_probs=51.9
Q ss_pred CCC--CchhhhhhhcCCCCccc-cccccccccCceEEEeeeecC---CCceEEecccccccccccceeeecCcEEEEEec
Q 042553 150 SVS--TSTWFLKALNSTDGLGS-LGTGWSKARDALFLNTAGING---TRGAVSLGFPVKPITNLFAGINLYGGRLSIATN 223 (1131)
Q Consensus 150 ~~~--~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~---~~g~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 223 (1131)
++. +++||+.+++.+....+ .-......+..++..++.|.+ -.|++.+.++.+.|.+.+. + .++.+++.+.
T Consensus 112 d~~~~~~~w~~~a~~~~~~~~s~~~~~~~~~~~~~i~~~~pi~~~g~~~Gv~~~~i~l~~l~~~~~-~--~~g~~~l~d~ 188 (274)
T 3lic_A 112 DYTDGNWDWWSKAINQVGGYWSKAYFDEGAGNVLMITYAVPFGVQPDYFGVTTVDLALDRLPEQLG-I--APSRLVVLDD 188 (274)
T ss_dssp CTTSSSCHHHHTTTTTSSCEECCCEECTTTTCSEEEEEEEEESCTTCCCEEEEEEEEGGGHHHHHT-S--CGGGEEEECT
T ss_pred CCCCCCCcHHHHHHhcCCCEEEeeEEcCCCCceEEEEEEEEEccCCEEEEEEEEEEEHHHHHHHhc-c--CCceEEEECC
Confidence 455 88999999875433211 000111112345555666632 2478888899999998887 5 7778999999
Q ss_pred CceEEEec
Q 042553 224 DGKVLVQG 231 (1131)
Q Consensus 224 ~g~~l~~~ 231 (1131)
+|.+++++
T Consensus 189 ~G~ii~~~ 196 (274)
T 3lic_A 189 QGRLIFHS 196 (274)
T ss_dssp TSCEEECS
T ss_pred CCCEEEeC
Confidence 99999964
No 282
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=68.51 E-value=6.2 Score=40.93 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=29.9
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcC-Ceee-ecccHHHHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLG-INVS-AVSRWERLHSTL 742 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g-~~~~-~~~~~~~l~~~l 742 (1131)
++++++|++..+..+..+|+..| +.+. .+.+..+....+
T Consensus 3 ~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l 43 (225)
T 3c3w_A 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARV 43 (225)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Confidence 58889999999999999999887 7743 567766554444
No 283
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=68.24 E-value=57 Score=37.25 Aligned_cols=100 Identities=19% Similarity=0.157 Sum_probs=66.9
Q ss_pred CeEEEEe----CCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC------C-
Q 042553 999 KKILVAD----DSMMLRRVAEINLRHLGATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE------M- 1065 (1131)
Q Consensus 999 ~~ILvvd----D~~~~~~~l~~~L~~~g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~------M- 1065 (1131)
..++++| +.....+.++.+-+..+..|. .+.+.++|..+.+. ..|.|.+-.. .
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a--------------GAD~I~vG~g~Gs~~~tr 222 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN--------------GADGIKVGIGPGSICTTR 222 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT--------------TCSEEEECC---------
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc--------------CCCEEEEeCCCCcCcccc
Confidence 4466664 223344555555455577665 58899999888775 4788887311 0
Q ss_pred ----CCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1066 ----PIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1066 ----P~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
.+...++++..+++... ...+|||+-.+-.+.++..+++.+||+...
T Consensus 223 ~~~g~g~p~~~al~~v~~~~~--~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 223 IVAGVGVPQITAIEKCSSVAS--KFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp CCSCBCCCHHHHHHHHHHHHT--TTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred cccccchhHHHHHHHHHHHHH--hcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 01234677777765422 236999999888889999999999999875
No 284
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=67.84 E-value=15 Score=34.38 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=27.1
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHS 740 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~ 740 (1131)
+++++++++..+..+...++.. +.+..+.+..+...
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~ 38 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIA 38 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHH
Confidence 5788888988888888888764 77777766655443
No 285
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=66.82 E-value=27 Score=33.79 Aligned_cols=42 Identities=7% Similarity=-0.060 Sum_probs=30.1
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCC-e-eeecccHHHHHHHHH
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGI-N-VSAVSRWERLHSTLK 743 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~-~-~~~~~~~~~l~~~l~ 743 (1131)
..+++++++++..+..+..+|+..|. . +..+.+..++...+.
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~ 68 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI 68 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc
Confidence 35789999999999999999998853 3 335666665544443
No 286
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=66.45 E-value=12 Score=41.00 Aligned_cols=82 Identities=11% Similarity=0.065 Sum_probs=49.3
Q ss_pred CCCCchhhhhhhcCCCC--cccc-----ccccc-cccCceEEEeeeec-CC--CceEEecccccccccccceeee-cCcE
Q 042553 150 SVSTSTWFLKALNSTDG--LGSL-----GTGWS-KARDALFLNTAGIN-GT--RGAVSLGFPVKPITNLFAGINL-YGGR 217 (1131)
Q Consensus 150 ~~~~~~~~~~~~~~~~~--~~~~-----~~~w~-~~~~~~~~~~~~~~-~~--~g~~~~g~~~~~i~~~~~~~~~-~~~~ 217 (1131)
+..+++||+.|++.+.+ +.+- ..|-- ......+..+..|. ++ .|++.+-+..+.+.+.+. ... .++.
T Consensus 112 n~~~R~yf~~a~~~~~~~~~~s~~~~~~~~g~~~~~~~p~i~~a~pV~~~g~~~GVlv~~i~l~~l~~~~~-~~~~~~~~ 190 (295)
T 3lid_A 112 DKSAREYFKYAQSLDNEQISAWGIELERDKGELVYPLSPSLRILMPISVNDVRQGYLVLNVDIEYLSSLLN-YSPVRDFH 190 (295)
T ss_dssp BCTTSHHHHHHHHSCTTCCEECCCEECEETTEECSSCCEEEEEEEEEEETTEEEEEEEEEEEHHHHHHHHS-EETTTTEE
T ss_pred cchhhHHHHHHhcCCCCcEEEeCceecccCCcccCCCCCEEEEEEEEccCCeEEEEEEEEecHHHHHHHHh-hcccCCCc
Confidence 56778899888875544 1111 00100 01133455555553 11 367667777777777665 222 3678
Q ss_pred EEEEecCceEEEecC
Q 042553 218 LSIATNDGKVLVQGI 232 (1131)
Q Consensus 218 ~~~~~~~g~~l~~~~ 232 (1131)
+++.+.+|.+++.+-
T Consensus 191 ~~l~d~~G~~l~~~~ 205 (295)
T 3lid_A 191 IELVKHKGFYIASPD 205 (295)
T ss_dssp CEEEETTSBEEECSC
T ss_pred EEEEcCCCCEEecCC
Confidence 999999999999753
No 287
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=65.57 E-value=67 Score=34.64 Aligned_cols=97 Identities=12% Similarity=0.004 Sum_probs=64.9
Q ss_pred HHHHHHHhCCCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEc---CCCCCCCHHHHHHHHhhhhccCCCCc
Q 042553 1013 VAEINLRHLGATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMD---CEMPIMNGYEATRKIREEEKRNQVHI 1088 (1131)
Q Consensus 1013 ~l~~~L~~~g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmD---i~MP~mdG~e~~r~IR~~~~~~~~~i 1088 (1131)
.+....+..|..+ ..+.+.+|+...... ..|+|-+. ...... +++.++++++.- ...+
T Consensus 153 ~l~~~a~~lGl~~lvev~t~ee~~~A~~~--------------Gad~IGv~~r~l~~~~~-dl~~~~~l~~~v---~~~~ 214 (272)
T 3qja_A 153 SMLDRTESLGMTALVEVHTEQEADRALKA--------------GAKVIGVNARDLMTLDV-DRDCFARIAPGL---PSSV 214 (272)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHH--------------TCSEEEEESBCTTTCCB-CTTHHHHHGGGS---CTTS
T ss_pred HHHHHHHHCCCcEEEEcCCHHHHHHHHHC--------------CCCEEEECCCccccccc-CHHHHHHHHHhC---cccC
Confidence 3444556688875 457888887666654 46777664 222222 356777887542 1258
Q ss_pred cEEEEcccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHH
Q 042553 1089 PIIALTAHISGEEADKTIEAGMDVHLG-----KPLNRDHLMEAI 1127 (1131)
Q Consensus 1089 pIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I 1127 (1131)
|+|+-.+-.+.++..++.++|+|+++. +.-++.+....+
T Consensus 215 pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~dp~~~~~~l 258 (272)
T 3qja_A 215 IRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADL 258 (272)
T ss_dssp EEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHH
Confidence 999999988899999999999999976 333555544433
No 288
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=65.29 E-value=13 Score=42.57 Aligned_cols=97 Identities=15% Similarity=0.298 Sum_probs=63.3
Q ss_pred HHHHhCCCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCC-----CCCCHHHHHHHHhhhhccCCCCc
Q 042553 1016 INLRHLGATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEM-----PIMNGYEATRKIREEEKRNQVHI 1088 (1131)
Q Consensus 1016 ~~L~~~g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~M-----P~mdG~e~~r~IR~~~~~~~~~i 1088 (1131)
..|++.|+.+. -+..|...+..+.. .++|.|=+|-.+ .......+++.|-...+.. .+
T Consensus 283 ~~l~~~G~~ialDDfG~g~ssl~~L~~-------------l~~d~iKiD~~~v~~~~~~~~~~~~v~~i~~~a~~l--~~ 347 (400)
T 3sy8_A 283 VRLWIMGCGLAMDDFGAGYSSLDRLCE-------------FPFSQIKLDRTFVQKMKTQPRSCAVISSVVALAQAL--GI 347 (400)
T ss_dssp HHHHHHTCEEEEEEECSCSGGGGSSSS-------------CCCSEEEECTHHHHHHHHCTTHHHHHHHHHHHHHHH--TC
T ss_pred HHHHHCCCEEEEECCCCchhhHHHHHh-------------CCCCEEEECHHHHhhhhcChhHHHHHHHHHHHHHHc--CC
Confidence 35667787654 46667666666554 479999998532 1233444555554433221 34
Q ss_pred cEEEEcccCCHHHHHHHHHcCCCE----EEECCCCHHHHHHHHH
Q 042553 1089 PIIALTAHISGEEADKTIEAGMDV----HLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1089 pIIalTa~~~~~~~~~~l~aG~d~----yL~KP~~~~~L~~~I~ 1128 (1131)
.+| ..+-.+.+....+.+.|++- |+.||...+++...++
T Consensus 348 ~vv-aEGVEt~~~~~~l~~~g~~~~QGy~~~~P~~~~~~~~~~~ 390 (400)
T 3sy8_A 348 SLV-VEGVESDEQRVRLIELGCSIAQGYLFARPMPEQHFLDYCS 390 (400)
T ss_dssp EEE-ECCCCCHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHH
T ss_pred eEE-EecCCcHHHHHHHHHcCCCEEEcCeecCcCCHHHHHHHHH
Confidence 444 45666778888888999985 4899999999988765
No 289
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=64.69 E-value=3.2 Score=44.84 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=55.2
Q ss_pred CCCCCCCchhhhhhhcCCCCccccccccccccCceEEEeeeec-CC--CceEEecccccccccccceeee-cCcEEEEEe
Q 042553 147 KPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGIN-GT--RGAVSLGFPVKPITNLFAGINL-YGGRLSIAT 222 (1131)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~--~g~~~~g~~~~~i~~~~~~~~~-~~~~~~~~~ 222 (1131)
+..+..+++||+.++..+.... .+-....+..++..++.|. ++ .|++.+.+..+.|.+.+..+.. .++.+++.+
T Consensus 118 ~~~d~~~~~w~~~a~~~~~~~~--s~p~~~~~~~~i~~~~pi~~~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d 195 (291)
T 3li9_A 118 PLVHYDSSDYYQLPKTTGKDTL--TEPYFYEGIFMVSYDSPIFKNGEFAGIAGVDVPLEYVDDVASSIRTFDTGYAFMVS 195 (291)
T ss_dssp ECCCTTTSHHHHHHHHHCSCEE--CCCEEETTEEEEEEEEEEEETTEEEEEEEEEEECHHHHHHHTTCCBTTTBEEEEEC
T ss_pred ecCCCccchHHHHHHHhCCCEE--EccEEeCCEEEEEEEEEEEECCEEEEEEEEEeeHHHHHHHHHhCCcCCCeEEEEEe
Confidence 3456788999999998543321 1111112334555555553 22 3777788888889888877665 467899999
Q ss_pred cCceEEEec
Q 042553 223 NDGKVLVQG 231 (1131)
Q Consensus 223 ~~g~~l~~~ 231 (1131)
.+|.+++.+
T Consensus 196 ~~G~ii~~~ 204 (291)
T 3li9_A 196 NTGIFLSHP 204 (291)
T ss_dssp TTCBBSCCS
T ss_pred CCCeEEEcC
Confidence 999999864
No 290
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=64.49 E-value=41 Score=34.58 Aligned_cols=111 Identities=16% Similarity=0.073 Sum_probs=72.8
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-CC
Q 042553 998 GKKILVA----DDSMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-MN 1069 (1131)
Q Consensus 998 ~~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-md 1069 (1131)
+.+||++ |-|.+-..++..+|+..||+|... ...++.++.+++. .+|+|.+-..|+. +.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~-------------~~d~v~lS~~~~~~~~ 154 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKY-------------QPDIVGMSALLTTTMM 154 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHH-------------CCSEEEEECCSGGGTH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEeccccccHH
Confidence 3478888 777888899999999999999864 3456667777653 6999999887764 22
Q ss_pred H-HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1070 G-YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1070 G-~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
. -++++.+|+... .+++||++--+....+. +.+.|+|.|.. +..+.....++
T Consensus 155 ~~~~~i~~l~~~~~--~~~~~v~vGG~~~~~~~---~~~~gad~~~~---da~~av~~~~~ 207 (210)
T 1y80_A 155 NMKSTIDALIAAGL--RDRVKVIVGGAPLSQDF---ADEIGADGYAP---DAASATELCRQ 207 (210)
T ss_dssp HHHHHHHHHHHTTC--GGGCEEEEESTTCCHHH---HHHHTCSEECS---SHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCCCeEEEECCCCCHHH---HHHcCCeEEEC---CHHHHHHHHHH
Confidence 2 345566765421 13477776655554333 35679997654 44444444443
No 291
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=64.26 E-value=5.5 Score=40.12 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=26.6
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCeeeec
Q 042553 702 GSHVVLLIANEERRRIAQKFMENLGINVSAV 732 (1131)
Q Consensus 702 ~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~ 732 (1131)
+.++++++|++..+..+...|+..|+.+..+
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~ 42 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQC 42 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEe
Confidence 4578999999999999999999999987654
No 292
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=62.28 E-value=2.9 Score=45.15 Aligned_cols=83 Identities=10% Similarity=0.109 Sum_probs=55.0
Q ss_pred CCCCCCCchhhhhhhcCCCCccccccccccccCceEEEeeeec-CC--CceEEecccccccccccceeee-cCcEEEEEe
Q 042553 147 KPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGIN-GT--RGAVSLGFPVKPITNLFAGINL-YGGRLSIAT 222 (1131)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~--~g~~~~g~~~~~i~~~~~~~~~-~~~~~~~~~ 222 (1131)
+..+..+++||+.+++.+... +.+-....+..++..++.|. ++ .|++.+.++.+.+.+.+..+.. .++.+++.+
T Consensus 117 ~~~d~~~r~w~~~a~~~~~~~--~s~p~~~~~~~~i~~~~pi~~~g~~~Gvl~~~i~l~~l~~~~~~~~~~~~g~~~l~d 194 (290)
T 3lib_A 117 PLLHYDSSDYYQLPKATEKDV--LTEPYFYEGVFMVSYVSPIMKEGEFAGIGGVDVSLEYVDEVVSKVRTFDTGYAFMVS 194 (290)
T ss_dssp ECSCTTTSHHHHHHHHHCSCE--ECCCEEETTEEEEEEEEEEEETTEEEEEEEEEEEHHHHHHHHHHCCBTTTBCEEEEC
T ss_pred ecCCCCcchHHHHHHHcCCCE--EEcCEEeCCeEEEEEEEEEEECCEEEEEEEEEEeHHHHHHHHHhCCcCCceEEEEEe
Confidence 345688999999999854332 11111112334555555553 22 3777788888888888877655 457889999
Q ss_pred cCceEEEec
Q 042553 223 NDGKVLVQG 231 (1131)
Q Consensus 223 ~~g~~l~~~ 231 (1131)
.+|.+++.+
T Consensus 195 ~~G~ii~~~ 203 (290)
T 3lib_A 195 NSGVILSHP 203 (290)
T ss_dssp TTCBBCCCS
T ss_pred CCCeEEEcC
Confidence 999999864
No 293
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=61.90 E-value=88 Score=35.26 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=66.9
Q ss_pred CeEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC----
Q 042553 999 KKILVAD----DSMMLRRVAEINLRHL-GATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI---- 1067 (1131)
Q Consensus 999 ~~ILvvd----D~~~~~~~l~~~L~~~-g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~---- 1067 (1131)
..++++| +.+...+.++.+-+.. +..+. .+.+.++|..+.+. ..|.|..-+. |+
T Consensus 121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a--------------GAD~I~vG~g-pGs~~~ 185 (366)
T 4fo4_A 121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA--------------GVSAVKVGIG-PGSICT 185 (366)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH--------------TCSEEEECSS-CSTTBC
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc--------------CCCEEEEecC-CCCCCC
Confidence 3466664 3344445555555554 55554 48899999988876 4788887311 21
Q ss_pred --------CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1068 --------MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1068 --------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
...++++..+++... ...+|||+--+-.+..+..+++.+|||....
T Consensus 186 tr~~~g~g~p~~~~l~~v~~~~~--~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 186 TRIVTGVGVPQITAIADAAGVAN--EYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHG--GGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cccccCcccchHHHHHHHHHHHh--hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 235667777765322 2368999988888899999999999998753
No 294
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=57.05 E-value=13 Score=38.30 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=24.0
Q ss_pred CeEEEEEeCHHHHHHHHHHHH-HcCCeeee
Q 042553 703 SHVVLLIANEERRRIAQKFME-NLGINVSA 731 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~-~~g~~~~~ 731 (1131)
.++++++|++..+..+..+++ ..|+.+..
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~ 37 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEI 37 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEE
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEE
Confidence 478999999999999999998 46887744
No 295
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=55.87 E-value=25 Score=45.95 Aligned_cols=46 Identities=30% Similarity=0.533 Sum_probs=30.6
Q ss_pred EEEEEecCCCCCcch--------HhhhccCCeecCC-------CCCC-cccchHHHHHHHHH
Q 042553 568 TFEVDDTGKGIPKEK--------RKTVFENYVQVKE-------GEGG-TGLGLGIVQSLVRL 613 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~--------~~~IFe~F~q~~~-------~~~G-tGLGLsIvk~Lv~~ 613 (1131)
.|+|.|+|.|||-+. .+-||-......+ -.|| .|.|.+.|.-|-+.
T Consensus 94 sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~ 155 (1177)
T 4gfh_A 94 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE 155 (1177)
T ss_dssp EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCc
Confidence 489999999999653 3456655443211 1244 69999998877653
No 296
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=55.18 E-value=1.1e+02 Score=32.90 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=72.8
Q ss_pred CCeEEEE----eCCHHHHHHHHHH--------HHhC-CCEEEE---ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEE
Q 042553 998 GKKILVA----DDSMMLRRVAEIN--------LRHL-GATVEA---CENGEAALQLVRSGLNDQRDLGAPHILPYDYILM 1061 (1131)
Q Consensus 998 ~~~ILvv----dD~~~~~~~l~~~--------L~~~-g~~v~~---a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILm 1061 (1131)
..+|+++ |-|.+-..++..+ |+.. ||+|.. .-..++.++.+.+. .+|+|.+
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~-------------~~d~Vgl 186 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVEL-------------EADVLLV 186 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHT-------------TCSEEEE
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHc-------------CCCEEEE
Confidence 3467665 6677777788877 9999 999875 34677778887763 7999999
Q ss_pred cCCCCC----CCH-HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Q 042553 1062 DCEMPI----MNG-YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127 (1131)
Q Consensus 1062 Di~MP~----mdG-~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I 1127 (1131)
-+.|.. +.. -++++.+|+... ..++||++=-+..+ ...+.+.|+|.|..--....++...+
T Consensus 187 S~l~t~~~~~~~~~~~~i~~L~~~g~--~~~i~vivGG~~~~---~~~a~~iGad~~~~da~~~~~~a~~l 252 (262)
T 1xrs_B 187 SQTVTQKNVHIQNMTHLIELLEAEGL--RDRFVLLCGGPRIN---NEIAKELGYDAGFGPGRFADDVATFA 252 (262)
T ss_dssp ECCCCTTSHHHHHHHHHHHHHHHTTC--GGGSEEEEECTTCC---HHHHHTTTCSEEECTTCCHHHHHHHH
T ss_pred EeecCCccchHHHHHHHHHHHHhcCC--CCCCEEEEECCcCC---HHHHHHcCCeEEECCchHHHHHHHHH
Confidence 998875 222 234556655321 12366654433332 23477889998877656665555544
No 297
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=54.05 E-value=14 Score=37.83 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=27.3
Q ss_pred eEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHH
Q 042553 704 HVVLLIANEERRRIAQKFMENLGINVSAVSRWER 737 (1131)
Q Consensus 704 ~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 737 (1131)
++++++|++..+..+..+|+..| .+..+.+..+
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~ 36 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGED 36 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHH
Confidence 58889999999999999999888 7777766554
No 298
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=53.70 E-value=91 Score=38.33 Aligned_cols=114 Identities=12% Similarity=0.045 Sum_probs=76.8
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-C-
Q 042553 998 GKKILVA----DDSMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-M- 1068 (1131)
Q Consensus 998 ~~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-m- 1068 (1131)
..+|+++ |.|.+-..++..+|+..||+|..- ...++.++.+.+. .+|+|.+-..|.. +
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~-------------~adiVglSsl~~~~~~ 662 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEA-------------DVHVVGVSSLAGGHLT 662 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHT-------------TCSEEEEEECSSCHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHc-------------CCCEEEEeeecHhHHH
Confidence 3467776 566677788999999999999863 3568888888763 6899999877652 2
Q ss_pred CHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1069 NGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1069 dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
..-++++.||+... .+++|+ +-+..-..+...+.++|+|+|..-=.+..++...+.
T Consensus 663 ~~~~vi~~L~~~G~---~~i~Vi-vGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~ 718 (727)
T 1req_A 663 LVPALRKELDKLGR---PDILIT-VGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLV 718 (727)
T ss_dssp HHHHHHHHHHHTTC---TTSEEE-EEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---CCCEEE-EcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHH
Confidence 23456677776532 245444 444333445566789999999985456655555443
No 299
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=53.31 E-value=24 Score=37.16 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCC------HHHHHHHHHcCCCEEEECCCC
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHIS------GEEADKTIEAGMDVHLGKPLN 1119 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~------~~~~~~~l~aG~d~yL~KP~~ 1119 (1131)
++++++||+. .++||++++.... .+....++++|+|..+.=...
T Consensus 69 ~~~i~~i~~~-----~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~ 118 (248)
T 1geq_A 69 FWIVKEFRRH-----SSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLP 118 (248)
T ss_dssp HHHHHHHHTT-----CCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCC
T ss_pred HHHHHHHHhh-----CCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCC
Confidence 6778888864 2578888874222 567888999999998884433
No 300
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=52.93 E-value=93 Score=34.98 Aligned_cols=91 Identities=19% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC------------CCCHHHH
Q 042553 1008 MMLRRVAEINLRHLGATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP------------IMNGYEA 1073 (1131)
Q Consensus 1008 ~~~~~~l~~~L~~~g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP------------~mdG~e~ 1073 (1131)
....+.++.+-+..+..+. .+.+.++|..+.+. ..|.|.+-.. | +...+++
T Consensus 131 ~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a--------------GaD~I~VG~~-~Gs~~~tr~~~g~g~p~~~~ 195 (361)
T 3khj_A 131 LNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN--------------GADGIKVGIG-PGSICTTRIVAGVGVPQITA 195 (361)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT--------------TCSEEEECSS-CCTTCCHHHHTCBCCCHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc--------------CcCEEEEecC-CCcCCCcccccCCCCCcHHH
Confidence 3344555555555576655 57888888887765 4788877211 1 1234666
Q ss_pred HHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++.+++.... ..+|||+--+-.+.++..+++.+|||....
T Consensus 196 i~~v~~~~~~--~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 196 IEKCSSVASK--FGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHH--HTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhh--cCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 6666543221 258999988888899999999999998753
No 301
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=51.85 E-value=71 Score=38.45 Aligned_cols=112 Identities=17% Similarity=0.129 Sum_probs=74.1
Q ss_pred CCeEEEE----eCCHHHHHHH----HHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC
Q 042553 998 GKKILVA----DDSMMLRRVA----EINLRHLGATVEA---CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP 1066 (1131)
Q Consensus 998 ~~~ILvv----dD~~~~~~~l----~~~L~~~g~~v~~---a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP 1066 (1131)
..+||+. |=|.+-..++ ..+|+..||+|.. ....++.++.+.+. .+|+|.+-..|.
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Ee-------------dADVVGLSsLLT 668 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIEL-------------KADAILASTIIS 668 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHT-------------TCSEEEEECCCC
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEecccc
Confidence 3478888 5566655433 5789999999975 34778888888874 799999998887
Q ss_pred C----CCHH-HHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Q 042553 1067 I----MNGY-EATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAI 1127 (1131)
Q Consensus 1067 ~----mdG~-e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I 1127 (1131)
. |..+ ++++.+|+... ...++|++=-+-... + .+.+.|+|.|..--....++...+
T Consensus 669 t~dihL~~MkevIelLrE~Gl--rDkIkVIVGGa~~tq-d--~AkeIGADa~f~DATeAVeVA~~L 729 (763)
T 3kp1_A 669 HDDIHYKNMKRIHELAVEKGI--RDKIMIGCGGTQVTP-E--VAVKQGVDAGFGRGSKGIHVATFL 729 (763)
T ss_dssp GGGHHHHHHHHHHHHHHHTTC--TTTSEEEEECTTCCH-H--HHHTTTCSEEECTTCCHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHhcCC--CCCCEEEEECCCCCH-H--HHHHcCCcEEECCcchHHHHHHHH
Confidence 6 3443 35566665421 113566553333333 3 345899999988767766665554
No 302
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=51.36 E-value=40 Score=35.76 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=57.9
Q ss_pred EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-------CCHHHHHHHHhhhhccCCCCccEEEEcccCC
Q 042553 1026 EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-------MNGYEATRKIREEEKRNQVHIPIIALTAHIS 1098 (1131)
Q Consensus 1026 ~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~ 1098 (1131)
..|.+.+|+.+.... .+|+|.+.--.|. .-|++.++++++.. ...+||+++.+- .
T Consensus 140 ~S~ht~~Ea~~A~~~--------------GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~---~~~iPvvAiGGI-~ 201 (243)
T 3o63_A 140 RSTHDPDQVAAAAAG--------------DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG---GDDKPWFAIGGI-N 201 (243)
T ss_dssp EEECSHHHHHHHHHS--------------SCSEEEECCSSCCCC-----CCCHHHHHHHHTC------CCCEEEESSC-C
T ss_pred EeCCCHHHHHHHhhC--------------CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc---cCCCCEEEecCC-C
Confidence 457899998877664 4899988653332 23788888887631 136899999886 5
Q ss_pred HHHHHHHHHcCCCEEEE-----CCCCHHHHHHHH
Q 042553 1099 GEEADKTIEAGMDVHLG-----KPLNRDHLMEAI 1127 (1131)
Q Consensus 1099 ~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I 1127 (1131)
.+....++++|++++.. +.-++.+-...+
T Consensus 202 ~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l 235 (243)
T 3o63_A 202 AQRLPAVLDAGARRIVVVRAITSADDPRAAAEQL 235 (243)
T ss_dssp TTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 67788999999999864 444554444333
No 303
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=51.08 E-value=12 Score=41.73 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=31.4
Q ss_pred CeEEEEEeCHHHHHHHHHHHH-HcCCeeeecccHHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFME-NLGINVSAVSRWERLHSTLK 743 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~l~~~l~ 743 (1131)
.++++++|++..+..+...+. ..|+.+..+.+..+....+.
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~ 60 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVAN 60 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHH
Confidence 458888888888999988886 46888888888776555443
No 304
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=50.77 E-value=98 Score=38.26 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=75.9
Q ss_pred CeEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-C-C
Q 042553 999 KKILVA----DDSMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-M-N 1069 (1131)
Q Consensus 999 ~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-m-d 1069 (1131)
.+|+++ |.|.+-..++..+|+..||+|..- ...++.++.+.+. .+|+|.+-..|.. + .
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~-------------~adiVglSsl~~~~~~~ 671 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDA-------------DVHAVGVSTLAAGHKTL 671 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT-------------TCSEEEEEECSSCHHHH
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHc-------------CCCEEEEeeecHHHHHH
Confidence 467665 455666778899999999999863 3568888888763 6899999877643 2 2
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~ 1129 (1131)
.-++++.||+... .+++|+ +-+-.-..+...+.++|+|+|...--+..+....+..
T Consensus 672 ~~~vi~~Lr~~G~---~dv~Vi-vGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~ 727 (762)
T 2xij_A 672 VPELIKELNSLGR---PDILVM-CGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLD 727 (762)
T ss_dssp HHHHHHHHHHTTC---TTSEEE-EEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC---CCCEEE-EeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHH
Confidence 3456667776532 245444 4432333355567899999999855566666655543
No 305
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=49.76 E-value=25 Score=37.91 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=34.8
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccC------CHHHHHHHHHcCCCEEEECCCCHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHI------SGEEADKTIEAGMDVHLGKPLNRDHLM 1124 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~d~yL~KP~~~~~L~ 1124 (1131)
++.++++|+. ..++||++++=.. ......+|.++|+|+.+.=-+.+++..
T Consensus 83 ~~~v~~ir~~----~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~ 138 (267)
T 3vnd_A 83 FDIITKVRAQ----HPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESA 138 (267)
T ss_dssp HHHHHHHHHH----CTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCH
T ss_pred HHHHHHHHhc----CCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHH
Confidence 6677777753 2468999987422 245678899999999988656555433
No 306
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=49.61 E-value=50 Score=34.09 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=49.7
Q ss_pred EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-------CCHHHHHHHHhhhhccCCCCccEEEEcccCCH
Q 042553 1027 ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-------MNGYEATRKIREEEKRNQVHIPIIALTAHISG 1099 (1131)
Q Consensus 1027 ~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~ 1099 (1131)
.+.+.+++.+.... ..|.|+++-..+. .-|++.++++++. ..+||++..+- +.
T Consensus 116 sv~t~~~~~~a~~~--------------gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~-----~~~pvia~GGI-~~ 175 (221)
T 1yad_A 116 SVHSLEEAVQAEKE--------------DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR-----ISIPVIAIGGM-TP 175 (221)
T ss_dssp EECSHHHHHHHHHT--------------TCSEEEEECCC----------CHHHHHHHHHHH-----CCSCEEEESSC-CG
T ss_pred EcCCHHHHHHHHhC--------------CCCEEEECCccccCCCCCCCCCCHHHHHHHHHh-----CCCCEEEECCC-CH
Confidence 56788887776654 4788888654332 2367888888754 25899988777 78
Q ss_pred HHHHHHHHcCCCEEEE
Q 042553 1100 EEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1100 ~~~~~~l~aG~d~yL~ 1115 (1131)
+...+++++|++++..
T Consensus 176 ~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 176 DRLRDVKQAGADGIAV 191 (221)
T ss_dssp GGHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 8889999999998754
No 307
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=49.16 E-value=67 Score=32.65 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=52.5
Q ss_pred CCCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-------CCHHHHHHHHhhhhccCCCCccEEE
Q 042553 1021 LGATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-------MNGYEATRKIREEEKRNQVHIPIIA 1092 (1131)
Q Consensus 1021 ~g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-------mdG~e~~r~IR~~~~~~~~~ipIIa 1092 (1131)
.+..+ ..+.+..++...... .+|.|+++-..|. ..+++.++++++.. ++||++
T Consensus 107 ~~~~~~v~~~t~~e~~~~~~~--------------g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~pvia 167 (215)
T 1xi3_A 107 PNLIIGASVYSLEEALEAEKK--------------GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV-----KIPVVA 167 (215)
T ss_dssp TTSEEEEEESSHHHHHHHHHH--------------TCSEEEEECSSCC----CCCCCHHHHHHHHHHHC-----SSCEEE
T ss_pred CCCEEEEecCCHHHHHHHHhc--------------CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC-----CCCEEE
Confidence 34433 346788887665543 4899998754443 35788888887642 589988
Q ss_pred EcccCCHHHHHHHHHcCCCEEE
Q 042553 1093 LTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1093 lTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
..+-. .+...+++++|++++.
T Consensus 168 ~GGI~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 168 IGGIN-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp ESSCC-TTTHHHHHTTTCSEEE
T ss_pred ECCcC-HHHHHHHHHcCCCEEE
Confidence 77655 7788888999999984
No 308
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=48.80 E-value=55 Score=34.98 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEcccC------CHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAHI------SGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~~------~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
.+++++++|+. .+++|+++++-.. .......|.++|+|+++.=.+..+++...++
T Consensus 81 ~~~~v~~ir~~----~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~ 141 (262)
T 2ekc_A 81 VLELSETLRKE----FPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKA 141 (262)
T ss_dssp HHHHHHHHHHH----CTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhh----cCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 34557777754 2268999985432 1456677999999999997777777655544
No 309
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=48.73 E-value=2.1e+02 Score=32.06 Aligned_cols=96 Identities=13% Similarity=0.016 Sum_probs=61.4
Q ss_pred CeEEEEeC----CHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCC---
Q 042553 999 KKILVADD----SMMLRRVAEINLRHL-GATVEA--CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM--- 1068 (1131)
Q Consensus 999 ~~ILvvdD----~~~~~~~l~~~L~~~-g~~v~~--a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~m--- 1068 (1131)
..++.+|= .....+.++.+-+.. +..|.. +.+.++|..+.+. ..|.|.+... |+.
T Consensus 113 vdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a--------------GaD~I~Vg~g-~G~~~~ 177 (361)
T 3r2g_A 113 ADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC--------------GADIIKAGIG-GGSVCS 177 (361)
T ss_dssp CCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT--------------TCSEEEECCS-SSSCHH
T ss_pred CCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc--------------CCCEEEEcCC-CCcCcc
Confidence 44777762 223334444433332 555554 7899999888875 4898888533 322
Q ss_pred ---------CHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1069 ---------NGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1069 ---------dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.-+++++++++. .. |||+-.+-....+..+++.+|||....
T Consensus 178 tr~~~g~g~p~l~aI~~~~~~-----~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 178 TRIKTGFGVPMLTCIQDCSRA-----DR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHCCCCCHHHHHHHHTTS-----SS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ccccCCccHHHHHHHHHHHHh-----CC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 234444444332 12 999988888899999999999998753
No 310
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=47.72 E-value=1.3e+02 Score=32.32 Aligned_cols=96 Identities=8% Similarity=0.053 Sum_probs=64.4
Q ss_pred HHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcC---CCCCCCHHHHHHHHhhhhccCCCCc
Q 042553 1013 VAEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDC---EMPIMNGYEATRKIREEEKRNQVHI 1088 (1131)
Q Consensus 1013 ~l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi---~MP~mdG~e~~r~IR~~~~~~~~~i 1088 (1131)
.+....+.+|..+. .+.|.+|+..++.. .+|+|=+.- .--..| ++.+.++...-+ ..+
T Consensus 160 ~l~~~a~~lGl~~lvevh~~eEl~~A~~~--------------ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip---~~~ 221 (272)
T 3tsm_A 160 ELEDTAFALGMDALIEVHDEAEMERALKL--------------SSRLLGVNNRNLRSFEVN-LAVSERLAKMAP---SDR 221 (272)
T ss_dssp HHHHHHHHTTCEEEEEECSHHHHHHHTTS--------------CCSEEEEECBCTTTCCBC-THHHHHHHHHSC---TTS
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHHHhc--------------CCCEEEECCCCCccCCCC-hHHHHHHHHhCC---CCC
Confidence 34444566898754 57888887666543 477775542 111223 566777765421 258
Q ss_pred cEEEEcccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHH
Q 042553 1089 PIIALTAHISGEEADKTIEAGMDVHLG-----KPLNRDHLMEA 1126 (1131)
Q Consensus 1089 pIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~ 1126 (1131)
|+|+-++-.+.++..++.++|+|++|. |+-++.+-...
T Consensus 222 ~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~~~~ 264 (272)
T 3tsm_A 222 LLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRA 264 (272)
T ss_dssp EEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHHHHH
T ss_pred cEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHHHHH
Confidence 999999999999999999999999975 66666554443
No 311
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=47.31 E-value=81 Score=32.40 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=58.5
Q ss_pred CCCCeEEEEe------CCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCC
Q 042553 996 LRGKKILVAD------DSMMLRRVAEINLRHLGATVEAC----ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEM 1065 (1131)
Q Consensus 996 ~~~~~ILvvd------D~~~~~~~l~~~L~~~g~~v~~a----~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~M 1065 (1131)
+.+.+|++++ |...+.......|+++|+++... .+.++..+.+++ .|.|++
T Consensus 25 ~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~---------------ad~I~l---- 85 (206)
T 3l4e_A 25 LQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK---------------NDFIYV---- 85 (206)
T ss_dssp CTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH---------------SSEEEE----
T ss_pred cCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh---------------CCEEEE----
Confidence 4568999997 55567778889999999999888 488888787775 688886
Q ss_pred CCCCHHHHHHHHhhhhcc------CCCCccEEEEcc
Q 042553 1066 PIMNGYEATRKIREEEKR------NQVHIPIIALTA 1095 (1131)
Q Consensus 1066 P~mdG~e~~r~IR~~~~~------~~~~ipIIalTa 1095 (1131)
|+-+-+.+++.+|+..-. .....|++..++
T Consensus 86 ~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 86 TGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp CCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred CCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 787777777777653210 012468887765
No 312
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=46.57 E-value=60 Score=35.11 Aligned_cols=86 Identities=15% Similarity=0.148 Sum_probs=54.2
Q ss_pred HHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC--CCCH----------HHHHHHHhhhhcc
Q 042553 1017 NLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP--IMNG----------YEATRKIREEEKR 1083 (1131)
Q Consensus 1017 ~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP--~mdG----------~e~~r~IR~~~~~ 1083 (1131)
..++.|. .+..+.|.+||-.+..- .+|+|...+-+- +.-| .+.++.+.+.-+.
T Consensus 158 ~A~~~gL~Ti~~v~~~eeA~amA~a--------------gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~ 223 (286)
T 2p10_A 158 EAHKLDLLTTPYVFSPEDAVAMAKA--------------GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAART 223 (286)
T ss_dssp HHHHTTCEECCEECSHHHHHHHHHH--------------TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCeEEEecCCHHHHHHHHHc--------------CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHH
Confidence 3455675 56788999999998875 589998854321 3333 3344444433333
Q ss_pred CCCCccEEEEc-ccCCHHHHHHHHHc--CCCEEEEC
Q 042553 1084 NQVHIPIIALT-AHISGEEADKTIEA--GMDVHLGK 1116 (1131)
Q Consensus 1084 ~~~~ipIIalT-a~~~~~~~~~~l~a--G~d~yL~K 1116 (1131)
-.+++.++.-. +-..++|.+.+++. |+++|+.-
T Consensus 224 vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 224 IRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp HCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEES
T ss_pred hCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEee
Confidence 34454333333 34678999999999 99999875
No 313
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=46.35 E-value=97 Score=31.43 Aligned_cols=106 Identities=10% Similarity=0.030 Sum_probs=62.3
Q ss_pred EEEEeCCH--HHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCC------
Q 042553 1001 ILVADDSM--MLRRVAEINLRHLGATVEAC----ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM------ 1068 (1131)
Q Consensus 1001 ILvvdD~~--~~~~~l~~~L~~~g~~v~~a----~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~m------ 1068 (1131)
.+++-+.+ .....+...+++.|..+... .+..+.++.+.+. ..|.|-++ |+.
T Consensus 80 ~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~-------------g~d~i~v~---~g~~g~~~~ 143 (211)
T 3f4w_A 80 YVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEA-------------GADMLAVH---TGTDQQAAG 143 (211)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHH-------------TCCEEEEE---CCHHHHHTT
T ss_pred EEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHc-------------CCCEEEEc---CCCcccccC
Confidence 44444433 33344555666778776542 3443433333331 46777765 332
Q ss_pred -CHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHH
Q 042553 1069 -NGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG-----KPLNRDHLMEAI 1127 (1131)
Q Consensus 1069 -dG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~L~~~I 1127 (1131)
.+++.++++|+.- +++||++-.+- ..++..+++++|+|.++. |.-++.+-.+.+
T Consensus 144 ~~~~~~i~~l~~~~----~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l 203 (211)
T 3f4w_A 144 RKPIDDLITMLKVR----RKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGEARKI 203 (211)
T ss_dssp CCSHHHHHHHHHHC----SSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHc----CCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 3567888888752 25788776555 477888999999999864 555554444333
No 314
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=46.10 E-value=2.1e+02 Score=33.51 Aligned_cols=101 Identities=18% Similarity=0.134 Sum_probs=67.7
Q ss_pred CCeEEEEe----CCHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC---
Q 042553 998 GKKILVAD----DSMMLRRVAEINLRHL-GATVEA--CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI--- 1067 (1131)
Q Consensus 998 ~~~ILvvd----D~~~~~~~l~~~L~~~-g~~v~~--a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~--- 1067 (1131)
+..++++| ..+...+.++.+-+.. +..+.. +.+.++|..+... ..|.|.+-. -|+
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a--------------GaD~I~vg~-g~Gs~~ 305 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA--------------GADAVKVGI-GPGSIC 305 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT--------------TCSEEEECS-SCSTTC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc--------------CCCEEEECC-CCCcCC
Confidence 34567766 3444556666666665 444443 6888888888765 478888721 111
Q ss_pred ---------CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1068 ---------MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1068 ---------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.-.++++..+++.-+ ...+|||+-.+-...++..+++.+||+..+.
T Consensus 306 ~t~~~~g~g~p~~~~l~~v~~~~~--~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 306 TTRIVAGVGVPQISAIANVAAALE--GTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHTCBCCCHHHHHHHHHHHHT--TTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CccccCCCCccHHHHHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 234566677765422 2369999999888999999999999998754
No 315
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=45.94 E-value=32 Score=39.87 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=44.1
Q ss_pred CCeEEEEeCCH---HHHHHHHHHHHhCCCEEEEECC---H----HHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC
Q 042553 998 GKKILVADDSM---MLRRVAEINLRHLGATVEACEN---G----EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI 1067 (1131)
Q Consensus 998 ~~~ILvvdD~~---~~~~~l~~~L~~~g~~v~~a~n---g----~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~ 1067 (1131)
|++|+++|-|+ .....+...-...|..+..+.. . .++++.++. ..||+||+|+ |+
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~-------------~~~D~VIIDT--pG 193 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL-------------KFYDVLLVDT--AG 193 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH-------------TTCSEEEEEC--CC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh-------------CCCCEEEEEC--CC
Confidence 68899999986 2223333344456777766543 2 234444442 2699999998 44
Q ss_pred CCHH--HHHHHHhhhhccCCCCccEEEEccc
Q 042553 1068 MNGY--EATRKIREEEKRNQVHIPIIALTAH 1096 (1131)
Q Consensus 1068 mdG~--e~~r~IR~~~~~~~~~ipIIalTa~ 1096 (1131)
..+. ++...+++......++..++++.+.
T Consensus 194 ~l~~~~~l~~~L~~~~~~~~p~~vllVvda~ 224 (433)
T 2xxa_A 194 RLHVDEAMMDEIKQVHASINPVETLFVVDAM 224 (433)
T ss_dssp CCTTCHHHHHHHHHHHHHSCCSEEEEEEETT
T ss_pred cccccHHHHHHHHHHHHhhcCcceeEEeecc
Confidence 3222 2334443322112334445555443
No 316
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=45.79 E-value=31 Score=37.11 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEccc------CCHHHHHHHHHcCCCEEEECCCCHHHHHHH
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAH------ISGEEADKTIEAGMDVHLGKPLNRDHLMEA 1126 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~------~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~ 1126 (1131)
+++.+++||+. ..++||++++-. ........|.++|+|+++.=.+..+++...
T Consensus 81 ~~~~v~~ir~~----~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~ 139 (268)
T 1qop_A 81 CFEMLAIIREK----HPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPF 139 (268)
T ss_dssp HHHHHHHHHHH----CSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHH
T ss_pred HHHHHHHHHhc----CCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHH
Confidence 34557777754 135899887622 224677889999999998866665444333
No 317
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=45.41 E-value=2.6e+02 Score=32.89 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=66.8
Q ss_pred CCeEEEEeCC----HHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC----
Q 042553 998 GKKILVADDS----MMLRRVAEINLRHLG-ATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP---- 1066 (1131)
Q Consensus 998 ~~~ILvvdD~----~~~~~~l~~~L~~~g-~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP---- 1066 (1131)
+..+++++.. .-..+.++.+-+..+ ..+. .+.+.++|..+... ..|.|.....--
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a--------------Gad~i~vg~g~gsi~~ 333 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA--------------GANVVKVGIGPGSICT 333 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH--------------TCSEEEECSSCSTTCC
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh--------------CCCEEEECCCCccccc
Confidence 4457777632 334455666555554 3433 57788888888776 478887643211
Q ss_pred -------CCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1067 -------IMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1067 -------~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+...++++..+++... ...+|||+--+-....+..+|+.+||+..+.
T Consensus 334 ~~~~~g~g~p~~~~l~~v~~~~~--~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 334 TRVVAGVGVPQLTAVYDCATEAR--KHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHH--TTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cccccCCCCCcHHHHHHHHHHHH--hCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 1233566666554322 2258999999988999999999999998864
No 318
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=45.39 E-value=1.6e+02 Score=32.34 Aligned_cols=81 Identities=21% Similarity=0.202 Sum_probs=58.0
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC----C---CCHHHHHHHHhhhhccCCCC
Q 042553 1016 INLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP----I---MNGYEATRKIREEEKRNQVH 1087 (1131)
Q Consensus 1016 ~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP----~---mdG~e~~r~IR~~~~~~~~~ 1087 (1131)
..+++.|..+. .+.+.++|...... ..|.|+++-.-+ + ...+++++++++. .+
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~~--------------GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~-----~~ 172 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAERL--------------GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR-----LR 172 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT--------------TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT-----CC
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHHc--------------CCCEEEEECCCCCcCCCCccccHHHHHHHHHHh-----cC
Confidence 34455576654 36888888877664 478888753212 1 2567888888763 36
Q ss_pred ccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1088 IPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1088 ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+|||+-.+-.+.++..+++.+|+|+...
T Consensus 173 iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 173 VPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp SCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 8999988887889999999999998754
No 319
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=44.63 E-value=1.5e+02 Score=30.85 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=44.5
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE------CCCCHHHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG------KPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KP~~~~~L~~~I~~ 1129 (1131)
++.++++++. ..+|||+-.+-...++..+++++|+|+.+. .|+++.++.+.++.
T Consensus 185 ~~~i~~l~~~-----~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l~~ 244 (252)
T 1ka9_F 185 LRLTRMVAEA-----VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYLAE 244 (252)
T ss_dssp HHHHHHHHHH-----CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8899999874 268999999888889999999999999865 46788888776653
No 320
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=43.63 E-value=11 Score=40.70 Aligned_cols=78 Identities=10% Similarity=0.056 Sum_probs=47.0
Q ss_pred CeEEEEeCC--HHHHHHHHHHHHhCCCEEEEECCHHH--HHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-CCCHHHH
Q 042553 999 KKILVADDS--MMLRRVAEINLRHLGATVEACENGEA--ALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-IMNGYEA 1073 (1131)
Q Consensus 999 ~~ILvvdD~--~~~~~~l~~~L~~~g~~v~~a~ng~e--Al~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-~mdG~e~ 1073 (1131)
++||||+++ +.-...+...|+..|++|.....-+- -.+.+. .||+||++-... ..+- +.
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~---------------~yDvIIl~d~~~~~l~~-~~ 68 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA---------------KQDLVILSDYPAERMTA-QA 68 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH---------------TCSEEEEESCCGGGBCH-HH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh---------------cCCEEEEcCCccccCCH-HH
Confidence 479999998 55677888899999999987654321 112332 599999873222 2332 44
Q ss_pred HHHHhhhhccCCCCccEEEEcc
Q 042553 1074 TRKIREEEKRNQVHIPIIALTA 1095 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa 1095 (1131)
++.|++.-.. + --+|++.+
T Consensus 69 ~~~L~~yV~~-G--GgLi~~gG 87 (259)
T 3rht_A 69 IDQLVTMVKA-G--CGLVMLGG 87 (259)
T ss_dssp HHHHHHHHHT-T--CEEEEECS
T ss_pred HHHHHHHHHh-C--CeEEEecC
Confidence 5555554322 2 23566644
No 321
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=42.15 E-value=1.3e+02 Score=30.81 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=50.5
Q ss_pred CCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC-----CC----CCCHHHHHHHHhhhhccCCCCccEE
Q 042553 1022 GATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE-----MP----IMNGYEATRKIREEEKRNQVHIPII 1091 (1131)
Q Consensus 1022 g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~-----MP----~mdG~e~~r~IR~~~~~~~~~ipII 1091 (1131)
|..+ ..+.+.+++..+... ..|+|..-.. .+ ...+++.++++++. ..+|||
T Consensus 119 ~~~v~~~~~t~~e~~~~~~~--------------G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~-----~~ipvi 179 (223)
T 1y0e_A 119 NVEIMADIATVEEAKNAARL--------------GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS-----VDAKVI 179 (223)
T ss_dssp TSEEEEECSSHHHHHHHHHT--------------TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH-----CCSEEE
T ss_pred CceEEecCCCHHHHHHHHHc--------------CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhh-----CCCCEE
Confidence 4443 356777887776553 3676643211 11 12246678888764 258999
Q ss_pred EEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1092 ALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1092 alTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+..+-.+.++..+++++|+|.++.
T Consensus 180 a~GGI~~~~~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 180 AEGNVITPDMYKRVMDLGVHCSVV 203 (223)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEE
T ss_pred EecCCCCHHHHHHHHHcCCCEEEE
Confidence 998887899999999999999865
No 322
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=41.86 E-value=93 Score=32.89 Aligned_cols=52 Identities=27% Similarity=0.273 Sum_probs=34.4
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE------CCCCHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG------KPLNRDHLMEAI 1127 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KP~~~~~L~~~I 1127 (1131)
+++++++++. ..+|||+-.+-...++..+++++|+|+++. .|....++.+.+
T Consensus 189 ~~~i~~l~~~-----~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l 246 (266)
T 2w6r_A 189 TEMIRFVRPL-----TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMRELKEYL 246 (266)
T ss_dssp HHHHHHHGGG-----CCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-------------
T ss_pred HHHHHHHHHH-----cCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHHH
Confidence 7889999864 368999999988889999999999999854 355555555544
No 323
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=41.76 E-value=57 Score=36.47 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=31.6
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHc-CCe-eeecccHHHHHHHHH
Q 042553 703 SHVVLLIANEERRRIAQKFMENL-GIN-VSAVSRWERLHSTLK 743 (1131)
Q Consensus 703 ~~vll~~~~~~~~~~~~~~l~~~-g~~-~~~~~~~~~l~~~l~ 743 (1131)
.++++++|+...+..+..+|+.. |+. +..+.+..+....++
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~ 46 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK 46 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHh
Confidence 46889999999999999999986 888 456777666554443
No 324
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=41.61 E-value=36 Score=37.23 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=35.4
Q ss_pred CCCeEEEEeCCH---HHHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC
Q 042553 997 RGKKILVADDSM---MLRRVAEINLRHLGATVEACE---NGE----AALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP 1066 (1131)
Q Consensus 997 ~~~~ILvvdD~~---~~~~~l~~~L~~~g~~v~~a~---ng~----eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP 1066 (1131)
.+.+|+++|-+. .....+....++.|..+.... +.. ++++.++. ..||+||+|+ |
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~-------------~~~D~ViIDT--p 189 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS-------------EKMEIIIVDT--A 189 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH-------------TTCSEEEEEC--C
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh-------------CCCCEEEEeC--C
Confidence 356899999883 333344445556677766542 333 34444442 2699999998 4
Q ss_pred CCCH
Q 042553 1067 IMNG 1070 (1131)
Q Consensus 1067 ~mdG 1070 (1131)
+..+
T Consensus 190 g~~~ 193 (297)
T 1j8m_F 190 GRHG 193 (297)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 4433
No 325
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=41.23 E-value=40 Score=34.55 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=54.4
Q ss_pred HHHHhCCCEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-CCCHHHHHHHHhhhhccCCCCccEEEE
Q 042553 1016 INLRHLGATV-EACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-IMNGYEATRKIREEEKRNQVHIPIIAL 1093 (1131)
Q Consensus 1016 ~~L~~~g~~v-~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-~mdG~e~~r~IR~~~~~~~~~ipIIal 1093 (1131)
...+..|..+ ..+.+..|+.+.... ..|+|++ .| ...|.+.++++++... .++||++.
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~--------------G~d~v~v---~~t~~~g~~~~~~l~~~~~---~~ipvia~ 154 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA--------------GAQALKI---FPSSAFGPQYIKALKAVLP---SDIAVFAV 154 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT--------------TCSEEEE---TTHHHHCHHHHHHHHTTSC---TTCEEEEE
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC--------------CCCEEEE---ecCCCCCHHHHHHHHHhcc---CCCeEEEe
Confidence 3445567552 237888998777654 4788886 22 1236788888876421 15899998
Q ss_pred cccCCHHHHHHHHHcCCCEEEE
Q 042553 1094 TAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1094 Ta~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.+-. .++..+++++|++++..
T Consensus 155 GGI~-~~~i~~~~~~Ga~gv~v 175 (212)
T 2v82_A 155 GGVT-PENLAQWIDAGCAGAGL 175 (212)
T ss_dssp SSCC-TTTHHHHHHHTCSEEEE
T ss_pred CCCC-HHHHHHHHHcCCCEEEE
Confidence 8775 77888999999999874
No 326
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=39.70 E-value=4e+02 Score=29.58 Aligned_cols=103 Identities=20% Similarity=0.149 Sum_probs=66.5
Q ss_pred CeEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC----
Q 042553 999 KKILVAD----DSMMLRRVAEINLRHL-GATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI---- 1067 (1131)
Q Consensus 999 ~~ILvvd----D~~~~~~~l~~~L~~~-g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~---- 1067 (1131)
..++.++ +.....+.++.+-+.. +..+. .+.+.++|..+.+. ..|.|.+-. -|+
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a--------------GaD~I~v~~-g~G~~~~ 197 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS--------------GADIIKVGI-GPGSVCT 197 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT--------------TCSEEEECS-SCSTTBC
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh--------------CCCEEEECC-CCCcCcC
Confidence 3455565 3334455565555554 55443 57889999888875 478886642 132
Q ss_pred --------CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEE-EECCC
Q 042553 1068 --------MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH-LGKPL 1118 (1131)
Q Consensus 1068 --------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y-L~KP~ 1118 (1131)
..-++++..+++.... ..+|||+-.+-.+..+..+++.+||+.. +-+||
T Consensus 198 ~r~~~g~~~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 198 TRKKTGVGYPQLSAVMECADAAHG--LKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHCBCCCHHHHHHHHHHHHHH--TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred ccccCCCCccHHHHHHHHHHHHhh--cCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 1234555555543221 2589999988889999999999999976 55665
No 327
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=39.59 E-value=1.4e+02 Score=34.01 Aligned_cols=92 Identities=18% Similarity=0.077 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCC---------C--CCCHHHH
Q 042553 1008 MMLRRVAEINLRHL-GATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEM---------P--IMNGYEA 1073 (1131)
Q Consensus 1008 ~~~~~~l~~~L~~~-g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~M---------P--~mdG~e~ 1073 (1131)
....+.+..+-+.. +..+. .+.+.++|..+.+. ..|.|.+-... + +.-.+++
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~--------------Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~ 244 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISV--------------GADCLKVGIGPGSICTTRIVAGVGVPQITA 244 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTT--------------TCSEEEECSSCSTTSHHHHHHCCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhc--------------CCCEEEECCCCCcCcCccccCCCCcchHHH
Confidence 34455555444554 55555 46777777766643 47888872100 0 2224666
Q ss_pred HHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++.+++... ...+|||+-.+-.+.++..+++.+|||....
T Consensus 245 l~~v~~~~~--~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 245 ICDVYEACN--NTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp HHHHHHHHT--TSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh--hcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 777765322 2369999999888899999999999998755
No 328
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=38.92 E-value=1.5e+02 Score=30.93 Aligned_cols=84 Identities=8% Similarity=0.042 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCCCCCCCCCCCCcc-EEE-EcCCCCCCC---------HHHHHHHH
Q 042553 1012 RVAEINLRHLGATVEACE---NGEAALQLVRSGLNDQRDLGAPHILPYD-YIL-MDCEMPIMN---------GYEATRKI 1077 (1131)
Q Consensus 1012 ~~l~~~L~~~g~~v~~a~---ng~eAl~~~~~~~~~~~~~~~~~~~~~D-lIL-mDi~MP~md---------G~e~~r~I 1077 (1131)
..+...+++.|..+...- +..++++.+... .| +|. +.. |+.. +++.++++
T Consensus 123 ~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~--------------~d~~i~~~~~--~G~~g~~~~~~~~~~~~i~~l 186 (248)
T 1geq_A 123 KEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM--------------TTGFVYLVSL--YGTTGAREEIPKTAYDLLRRA 186 (248)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH--------------CSSEEEEECC--C-------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc--------------CCCeEEEEEC--CccCCCCCCCChhHHHHHHHH
Confidence 345556667787655433 456777766542 23 443 443 5433 34567777
Q ss_pred hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEEC
Q 042553 1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116 (1131)
Q Consensus 1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1116 (1131)
|+. .++||++-.+-...++..+++++|+|.++.=
T Consensus 187 ~~~-----~~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 187 KRI-----CRNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHH-----CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred Hhh-----cCCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 764 2589988877777789989999999998763
No 329
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=38.56 E-value=1e+02 Score=32.82 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+.+.++++|+. ..+|||+..+-.+.++..+++++|+|+++.
T Consensus 166 ~~~~l~~i~~~-----~~iPviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 166 NPLNLSFIIEQ-----AKVPVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp CHHHHHHHHHH-----CSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHhc-----CCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 47888999873 268999998888899999999999999865
No 330
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=38.40 E-value=13 Score=39.82 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=34.4
Q ss_pred EEEEEecCCCCCcchHhhhccCCe-----------ec---CC-CCCCcccchHHHHHHHHHhCCEEEEEee
Q 042553 568 TFEVDDTGKGIPKEKRKTVFENYV-----------QV---KE-GEGGTGLGLGIVQSLVRLMGGDIEIVDK 623 (1131)
Q Consensus 568 ~i~V~DtG~GI~~e~~~~IFe~F~-----------q~---~~-~~~GtGLGLsIvk~Lv~~~gG~I~v~s~ 623 (1131)
.|.|.|+|+||+++++..-|-..- +. +. -.|-.|+|+.=|- +..-++.|.++
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaF----mVAdkV~V~Sk 197 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSF----LVSNRVEVYTK 197 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGG----GTEEEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheee----ccCCEEEEEEc
Confidence 589999999999999987664321 11 11 1255688987543 33467777776
No 331
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=37.94 E-value=2.3e+02 Score=33.29 Aligned_cols=88 Identities=13% Similarity=0.062 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcC--------------CCCCCCH
Q 042553 1008 MMLRRVAEINLRHL-GATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDC--------------EMPIMNG 1070 (1131)
Q Consensus 1008 ~~~~~~l~~~L~~~-g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi--------------~MP~mdG 1070 (1131)
....+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|.+-. .+|....
T Consensus 281 ~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a--------------Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~ 346 (514)
T 1jcn_A 281 VYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA--------------GVDGLRVGMGCGSICITQEVMACGRPQGTA 346 (514)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH--------------TCSEEEECSSCSCCBTTBCCCSCCCCHHHH
T ss_pred hhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHc--------------CCCEEEECCCCCcccccccccCCCccchhH
Confidence 34455666666655 66655 47888888887765 367776632 2222334
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
+..++++++. ..+|||+-.+-....+..+++.+|||...
T Consensus 347 ~~~~~~~~~~-----~~ipVia~GGI~~~~di~kala~GAd~V~ 385 (514)
T 1jcn_A 347 VYKVAEYARR-----FGVPIIADGGIQTVGHVVKALALGASTVM 385 (514)
T ss_dssp HHHHHHHHGG-----GTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHhh-----CCCCEEEECCCCCHHHHHHHHHcCCCeee
Confidence 5666666543 25899999988889999999999999764
No 332
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=37.86 E-value=1.6e+02 Score=35.20 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=67.0
Q ss_pred CCeEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-CC
Q 042553 998 GKKILVA----DDSMMLRRVAEINLRHLGATVEAC---ENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-MN 1069 (1131)
Q Consensus 998 ~~~ILvv----dD~~~~~~~l~~~L~~~g~~v~~a---~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-md 1069 (1131)
+.+||++ |-|.+-..++..+|+..||+|... ...++.++.+.+. .+|+|.+-..|.. ++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~-------------~~diVgLS~l~t~~~~ 164 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEV-------------NADLIGLSGLITPSLD 164 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHH-------------TCSEEEEECCSTHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-------------CCCEEEEEecCCCCHH
Confidence 3578887 667788889999999999999753 4577777777763 6999999987753 11
Q ss_pred -HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHH---HcCCCEEEE
Q 042553 1070 -GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTI---EAGMDVHLG 1115 (1131)
Q Consensus 1070 -G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l---~aG~d~yL~ 1115 (1131)
--++++++|+. +.++||++--+-...+....-+ -.|+|.|..
T Consensus 165 ~m~~~i~~Lr~~----g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 165 EMVNVAKEMERQ----GFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQ 210 (579)
T ss_dssp HHHHHHHHHHHT----TCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECC
T ss_pred HHHHHHHHHHHc----CCCCeEEEEccccchhhhhhhhhhcccCCeEEEC
Confidence 12345566553 3478887665555444322111 129988854
No 333
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=37.52 E-value=1.8e+02 Score=31.96 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=57.9
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-----CCCHHHHHHHHhhhhccCCCCcc
Q 042553 1016 INLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-----IMNGYEATRKIREEEKRNQVHIP 1089 (1131)
Q Consensus 1016 ~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-----~mdG~e~~r~IR~~~~~~~~~ip 1089 (1131)
..++..|..+. .+.+.++|..+.+. ..|.|+++-.-+ ....+++++++++. ..+|
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~--------------GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~-----~~iP 178 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA--------------GADAVIAEGMESGGHIGEVTTFVLVNKVSRS-----VNIP 178 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT--------------TCSCEEEECTTSSEECCSSCHHHHHHHHHHH-----CSSC
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc--------------CCCEEEEECCCCCccCCCccHHHHHHHHHHH-----cCCC
Confidence 34455676654 46888888776654 478888753211 13467888888764 2589
Q ss_pred EEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1090 IIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1090 IIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
||+-.+-.+.++..+++.+|++++..
T Consensus 179 viaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 179 VIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp EEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred EEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 99988888899999999999998753
No 334
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=37.10 E-value=96 Score=33.87 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhccCCCCccEE--EEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1071 YEATRKIREEEKRNQVHIPII--ALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipII--alTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+++++++++. ..+||| +-.+-...++..+++++|+|+++.
T Consensus 196 ~~ll~~i~~~-----~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlV 237 (297)
T 4adt_A 196 IDLILLTRKL-----KRLPVVNFAAGGIATPADAAMCMQLGMDGVFV 237 (297)
T ss_dssp HHHHHHHHHH-----TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEE
T ss_pred HHHHHHHHHh-----cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 6788888764 246776 566666899999999999999975
No 335
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=37.04 E-value=29 Score=37.56 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=30.2
Q ss_pred CHHHHHHHHhhhhccCCCCccEEEEcc------cCCHHHHHHHHHcCCCEEEECCCCHHH
Q 042553 1069 NGYEATRKIREEEKRNQVHIPIIALTA------HISGEEADKTIEAGMDVHLGKPLNRDH 1122 (1131)
Q Consensus 1069 dG~e~~r~IR~~~~~~~~~ipIIalTa------~~~~~~~~~~l~aG~d~yL~KP~~~~~ 1122 (1131)
+.++.++++|+. ..++||++||= ........+|.++|+|+.+.=-+.+++
T Consensus 83 ~~~~~v~~~r~~----~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee 138 (271)
T 3nav_A 83 ICFELIAQIRAR----NPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNE 138 (271)
T ss_dssp HHHHHHHHHHHH----CTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGG
T ss_pred HHHHHHHHHHhc----CCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHH
Confidence 346667777753 23578877762 122445677778888887764444443
No 336
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=35.76 E-value=66 Score=34.72 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHHHHHHhhhhccCCCCccEEEE--cccCCHHHHHHHHHcCCCEEEE
Q 042553 1071 YEATRKIREEEKRNQVHIPIIAL--TAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIal--Ta~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
|++++++++. .++|||++ .+-.++++..++++.|+|+.+.
T Consensus 187 ~elI~~Ike~-----~~IPVV~IAnGGI~TpedA~~~le~GaDGVmV 228 (291)
T 3o07_A 187 VSLLKDVLEK-----GKLPVVNFAAGGVATPADAALLMQLGCDGVFV 228 (291)
T ss_dssp HHHHHHHHHH-----TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEE
T ss_pred HHHHHHHHHc-----cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEE
Confidence 7888888764 36899877 3344789999999999999864
No 337
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=35.65 E-value=4.1e+02 Score=31.01 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCeEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC---
Q 042553 998 GKKILVAD----DSMMLRRVAEINLRHL-GATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI--- 1067 (1131)
Q Consensus 998 ~~~ILvvd----D~~~~~~~l~~~L~~~-g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~--- 1067 (1131)
|..++.++ +.....+.++.+-+.. +..+. .+.+.++|..+... ..|.|.+... |+
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a--------------GaD~I~Vg~g-~Gs~~ 307 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA--------------GVSAVKVGIG-PGSIC 307 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH--------------TCSEEEECSS-CCTTB
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh--------------CCCEEEECCC-CCcCc
Confidence 34567766 3445556666666665 44333 46788888887765 4788886421 11
Q ss_pred ---------CCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1068 ---------MNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1068 ---------mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..-++++..+.+..+. ..+|||+-.+-...++..+++.+|||..+.
T Consensus 308 ~tr~~~g~g~p~~~~i~~v~~~~~~--~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 308 TTRIVTGVGVPQITAIADAAGVANE--YGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp CHHHHHCCCCCHHHHHHHHHHHHGG--GTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ccccccCCCccHHHHHHHHHHHhcc--CCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 2245566666543221 258999988888899999999999998764
No 338
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=35.14 E-value=1.2e+02 Score=31.12 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=47.0
Q ss_pred ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC--------CCCHHHHHHHHhhhhccCCCCccEEEEcccCCH
Q 042553 1028 CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP--------IMNGYEATRKIREEEKRNQVHIPIIALTAHISG 1099 (1131)
Q Consensus 1028 a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP--------~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~ 1099 (1131)
+.+..++...... .+|.|++....| ..-|++.++++++.. .++||++..+-. .
T Consensus 123 ~~t~~e~~~a~~~--------------g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~----~~~pvia~GGI~-~ 183 (227)
T 2tps_A 123 AHTMSEVKQAEED--------------GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG----ISIPIVGIGGIT-I 183 (227)
T ss_dssp ECSHHHHHHHHHH--------------TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT----CCCCEEEESSCC-T
T ss_pred cCCHHHHHHHHhC--------------CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC----CCCCEEEEcCCC-H
Confidence 5788886665543 489888622112 123688888887642 138999887765 7
Q ss_pred HHHHHHHHcCCCEEEE
Q 042553 1100 EEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1100 ~~~~~~l~aG~d~yL~ 1115 (1131)
+...+++++|++++..
T Consensus 184 ~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 184 DNAAPVIQAGADGVSM 199 (227)
T ss_dssp TTSHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 7777889999999853
No 339
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=35.11 E-value=64 Score=32.89 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=41.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1055 ~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.||+| =-||+.-- ++++++++. ..+|||+=-.-.+.++...|+++||+..-+
T Consensus 127 ~PD~i---EiLPGi~p-~iI~~i~~~-----~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 127 QPDCI---ELLPGIIP-EQVQKMTQK-----LHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp CCSEE---EEECTTCH-HHHHHHHHH-----HCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred CCCEE---EECCchhH-HHHHHHHHh-----cCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 57877 23687653 788888875 268999888888899999999999998765
No 340
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=34.48 E-value=78 Score=33.29 Aligned_cols=96 Identities=21% Similarity=0.169 Sum_probs=60.0
Q ss_pred HHHHHhCCC-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEE
Q 042553 1015 EINLRHLGA-TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIAL 1093 (1131)
Q Consensus 1015 ~~~L~~~g~-~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIal 1093 (1131)
...|.+.+. -|....+.++++++.+.-. ....++|=+.+. ..++.+++++||+.- +. .+|..
T Consensus 28 ~~~l~~~~vv~Vir~~~~~~a~~~a~al~----------~gGi~~iEvt~~--t~~a~e~I~~l~~~~----~~-~~iGa 90 (232)
T 4e38_A 28 NNQLKALKVIPVIAIDNAEDIIPLGKVLA----------ENGLPAAEITFR--SDAAVEAIRLLRQAQ----PE-MLIGA 90 (232)
T ss_dssp HHHHHHHCEEEEECCSSGGGHHHHHHHHH----------HTTCCEEEEETT--STTHHHHHHHHHHHC----TT-CEEEE
T ss_pred HHHHHhCCEEEEEEcCCHHHHHHHHHHHH----------HCCCCEEEEeCC--CCCHHHHHHHHHHhC----CC-CEEeE
Confidence 344555564 4666788888888766421 124565555444 557899999998752 23 34444
Q ss_pred cccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1094 TAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1094 Ta~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
..-...++.+.++++|++..+ -|-...++.+..+
T Consensus 91 GTVlt~~~a~~Ai~AGA~fIv-sP~~~~~vi~~~~ 124 (232)
T 4e38_A 91 GTILNGEQALAAKEAGATFVV-SPGFNPNTVRACQ 124 (232)
T ss_dssp ECCCSHHHHHHHHHHTCSEEE-CSSCCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHcCCCEEE-eCCCCHHHHHHHH
Confidence 334568899999999998555 4654445555444
No 341
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=33.85 E-value=1e+02 Score=27.16 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=32.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh
Q 042553 1001 ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRS 1040 (1131)
Q Consensus 1001 ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~ 1040 (1131)
+|+-|.+..-.+..+.-++..||+|.-+.+.++|+..+++
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 4555666666778888889999999999999999998875
No 342
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=33.80 E-value=4.3e+02 Score=27.94 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=50.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE-ECCCCHHHHHHHHHH
Q 042553 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL-GKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1055 ~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL-~KP~~~~~L~~~I~~ 1129 (1131)
.+|.|++|+.=...+--++...++.... ...++++=+...+..+...++++|++..+ .|=-+.+++...++.
T Consensus 39 GaD~v~lDlE~~~~~~~~~~~~~~a~~~---~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 39 GYDWLLIDGEHAPNTIQDLYHQLQAVAP---YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp CCSEEEEETTTSCCCHHHHHHHHHHHTT---SSSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 6999999997766666666666665432 13556665666678888899999999754 444567777766554
No 343
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=33.79 E-value=4e+02 Score=28.65 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=62.6
Q ss_pred HHHHHHhCCC-EEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccE
Q 042553 1014 AEINLRHLGA-TVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPI 1090 (1131)
Q Consensus 1014 l~~~L~~~g~-~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipI 1090 (1131)
++..|+. |. .+. .-.+..+.++.+.. ..+|.|++|+.=...+--++...++.... ...++
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~-------------~GaD~v~lDlEh~~~~~~~~~~~l~a~~~---~~~~~ 92 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAG-------------AGFDWLLIDGEHAPNNVQTVLTQLQAIAP---YPSQP 92 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHT-------------SCCSEEEEESSSSSCCHHHHHHHHHHHTT---SSSEE
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHh-------------CCCCEEEEeCCCccchHHHHHHHHHHHHh---cCCCE
Confidence 4445543 44 332 23344555666654 26999999997665665555555655432 14566
Q ss_pred EEEcccCCHHHHHHHHHcCCCEEEE-CCCCHHHHHHHHHH
Q 042553 1091 IALTAHISGEEADKTIEAGMDVHLG-KPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1091 IalTa~~~~~~~~~~l~aG~d~yL~-KP~~~~~L~~~I~~ 1129 (1131)
++=+...+..+...++++|++..+. |--+.+++.+.++.
T Consensus 93 ~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 93 VVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp EEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 6667667788899999999997544 43567777766654
No 344
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=33.74 E-value=41 Score=41.94 Aligned_cols=38 Identities=5% Similarity=0.091 Sum_probs=31.1
Q ss_pred eEEEEEeCH-HH-------HHHHHHHHHHcCCeeeecccHHHHHHH
Q 042553 704 HVVLLIANE-ER-------RRIAQKFMENLGINVSAVSRWERLHST 741 (1131)
Q Consensus 704 ~vll~~~~~-~~-------~~~~~~~l~~~g~~~~~~~~~~~l~~~ 741 (1131)
++++++|+. .. ++.+...|+..|+.|..+.+.++....
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~ 47 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAI 47 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHH
Confidence 577787777 67 899999999999999999888765433
No 345
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=33.45 E-value=2.1e+02 Score=30.36 Aligned_cols=84 Identities=10% Similarity=0.231 Sum_probs=57.8
Q ss_pred CHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcC
Q 042553 1030 NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAG 1109 (1131)
Q Consensus 1030 ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG 1109 (1131)
+..+.++.+... .+|.|++|+.--..+.-.+...++..... ...++|=+- ..+..+..+++++|
T Consensus 25 ~~p~~~e~a~~~-------------g~D~vilDlEhav~~~~k~~~~l~a~~~~--~~~~~VRVn-~~~~~di~~~ld~G 88 (261)
T 3qz6_A 25 YNPDIVRIYAEA-------------GLDYFIVDCEHAAYTFREINHLVSVAKNA--GVSVLVRIP-QVDRAHVQRLLDIG 88 (261)
T ss_dssp CCTTHHHHHHHT-------------TCSEEEEESSSSCCCHHHHHHHHHHHHHH--TCEEEEECS-SCCHHHHHHHHHHT
T ss_pred CCHHHHHHHhcC-------------CcCEEEEeccCCCCCHHHHHHHHHHHhhc--CCeEEEEeC-CCCHHHHHHHHhcC
Confidence 446666666542 69999999999888887777777765421 123344444 44667899999999
Q ss_pred CCEEEE-CCCCHHHHHHHHHH
Q 042553 1110 MDVHLG-KPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1110 ~d~yL~-KP~~~~~L~~~I~~ 1129 (1131)
+++.+. |--+.+++...++.
T Consensus 89 ~~gI~lP~v~saed~~~~~~~ 109 (261)
T 3qz6_A 89 AEGFMIPGVQSAETMRETVRL 109 (261)
T ss_dssp CCEEEETTCCSHHHHHHHHHH
T ss_pred CCEEEECCcCCHHHHHHHHHH
Confidence 998654 44467777766654
No 346
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=33.40 E-value=1.6e+02 Score=31.95 Aligned_cols=90 Identities=20% Similarity=0.173 Sum_probs=0.0
Q ss_pred EEEEeCCHHH----HHHHHHHHHhCCCE---EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHH
Q 042553 1001 ILVADDSMML----RRVAEINLRHLGAT---VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEA 1073 (1131)
Q Consensus 1001 ILvvdD~~~~----~~~l~~~L~~~g~~---v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~ 1073 (1131)
+||.||+-.. ...+...-+..+.. -..+.+.+|+.+++.. ..|.|.+|-.-| +.
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a--------------GaD~I~ld~~~~-----~~ 229 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA--------------GADLILLDNFPL-----EA 229 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH--------------TCSEEEEESCCH-----HH
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc--------------CCCEEEECCCCH-----HH
Q ss_pred HHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEE
Q 042553 1074 TRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVH 1113 (1131)
Q Consensus 1074 ~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~y 1113 (1131)
++++.+.- ..++|+++ ++.-..+......++|+|.+
T Consensus 230 ~k~av~~v---~~~ipi~A-sGGIt~eni~~~a~tGvD~I 265 (286)
T 1x1o_A 230 LREAVRRV---GGRVPLEA-SGNMTLERAKAAAEAGVDYV 265 (286)
T ss_dssp HHHHHHHH---TTSSCEEE-ESSCCHHHHHHHHHHTCSEE
T ss_pred HHHHHHHh---CCCCeEEE-EcCCCHHHHHHHHHcCCCEE
No 347
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=33.02 E-value=2.9e+02 Score=30.76 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=55.1
Q ss_pred HhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC---------CC-----C--CCHHHHHHHHhhhh
Q 042553 1019 RHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE---------MP-----I--MNGYEATRKIREEE 1081 (1131)
Q Consensus 1019 ~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~---------MP-----~--mdG~e~~r~IR~~~ 1081 (1131)
+..|..+. .+.+.++|..+... ..|.|+++-. .+ . .+.+++++++++.
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~~~--------------GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~- 206 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVEAA--------------GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA- 206 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHT--------------TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH-
T ss_pred HHCCCeEEEECCCHHHHHHHHHc--------------CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh-
Confidence 33566543 56788887766654 4788888531 11 1 3448889998864
Q ss_pred ccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1082 KRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1082 ~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
..+|||+..+-.+.++..+++++|+|.+.
T Consensus 207 ----~~iPViaaGGI~~~~~~~~~l~~GAd~V~ 235 (369)
T 3bw2_A 207 ----VDIPVVAAGGIMRGGQIAAVLAAGADAAQ 235 (369)
T ss_dssp ----CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred ----cCceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 26899988887789999999999999875
No 348
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=32.42 E-value=2.6e+02 Score=30.66 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=54.1
Q ss_pred HhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC-----CCCHHHHHHHHhhhhccCCCCccEEE
Q 042553 1019 RHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP-----IMNGYEATRKIREEEKRNQVHIPIIA 1092 (1131)
Q Consensus 1019 ~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP-----~mdG~e~~r~IR~~~~~~~~~ipIIa 1092 (1131)
++.|..+. .+.+.++|..+.+. ..|.|+++-.-. ....+++++++++. ..+|||+
T Consensus 107 ~~~g~~v~~~v~~~~~a~~~~~~--------------GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~-----~~iPVia 167 (332)
T 2z6i_A 107 HEAGIIVIPVVPSVALAKRMEKI--------------GADAVIAEGMEAGGHIGKLTTMTLVRQVATA-----ISIPVIA 167 (332)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHT--------------TCSCEEEECTTSSEECCSSCHHHHHHHHHHH-----CSSCEEE
T ss_pred HHcCCeEEEEeCCHHHHHHHHHc--------------CCCEEEEECCCCCCCCCCccHHHHHHHHHHh-----cCCCEEE
Confidence 34566544 36777776655543 478787753211 23457888888864 2589999
Q ss_pred EcccCCHHHHHHHHHcCCCEEE
Q 042553 1093 LTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1093 lTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
-.+-.+.++..+++.+|+|+..
T Consensus 168 aGGI~~~~~~~~al~~GAdgV~ 189 (332)
T 2z6i_A 168 AGGIADGEGAAAGFMLGAEAVQ 189 (332)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEE
T ss_pred ECCCCCHHHHHHHHHcCCCEEE
Confidence 8888889999999999999875
No 349
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=32.05 E-value=1.8e+02 Score=30.34 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=37.5
Q ss_pred EEEEcCCCCCCCH---HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1058 YILMDCEMPIMNG---YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1058 lILmDi~MP~mdG---~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+.+.|.....+.. ++.+++|++. ..+|+++...-.+.++..+++++|+|..+.
T Consensus 48 i~v~d~~~~~~~~~~~~~~i~~i~~~-----~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 48 LVFLDISATHEERAILLDVVARVAER-----VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp EEEEECCSSTTCHHHHHHHHHHHHTT-----CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred EEEEcCCccccCccccHHHHHHHHHh-----CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 3444655333322 3456666642 368999999988899999999999998765
No 350
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=31.79 E-value=1.9e+02 Score=29.76 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=50.4
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEE---EEcCCCCC-----CCHHHHHHHHhhhhccCCCCccEEE
Q 042553 1022 GATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYI---LMDCEMPI-----MNGYEATRKIREEEKRNQVHIPIIA 1092 (1131)
Q Consensus 1022 g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlI---LmDi~MP~-----mdG~e~~r~IR~~~~~~~~~ipIIa 1092 (1131)
+..+. .+.+.++|...... ..|+| ++... |. ..+++.++++++. .+||++
T Consensus 133 ~~~v~~~~~t~~ea~~a~~~--------------Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~------~ipvia 191 (234)
T 1yxy_A 133 NQLLMADISTFDEGLVAHQA--------------GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA------GIAVIA 191 (234)
T ss_dssp TCEEEEECSSHHHHHHHHHT--------------TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT------TCCEEE
T ss_pred CCeEEEeCCCHHHHHHHHHc--------------CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC------CCCEEE
Confidence 44443 45777887776654 36776 33321 21 1236778888752 489999
Q ss_pred EcccCCHHHHHHHHHcCCCEEEE
Q 042553 1093 LTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1093 lTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..+-.+.++..+++++|+|.++.
T Consensus 192 ~GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 192 EGKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp ESCCCSHHHHHHHHTTCCSEEEE
T ss_pred ECCCCCHHHHHHHHHCCCCEEEE
Confidence 88888899999999999999864
No 351
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=31.46 E-value=2.1e+02 Score=29.39 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=43.3
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE------CCCCHHHHHHHHHH
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG------KPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KP~~~~~L~~~I~~ 1129 (1131)
.++.++++++. .++||++-.+-...++..+++++|+|+++. .+.+.+++.+.+++
T Consensus 186 ~~~~i~~l~~~-----~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~l~~ 246 (253)
T 1h5y_A 186 DVELIRRVADS-----VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLKE 246 (253)
T ss_dssp CHHHHHHHHHH-----CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHh-----cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 36788888864 268999988887788999999999999864 56677888777764
No 352
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=30.91 E-value=1.7e+02 Score=30.35 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=42.9
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHc-----C-CCEEEE------CCCCHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEA-----G-MDVHLG------KPLNRDHLMEAI 1127 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~a-----G-~d~yL~------KP~~~~~L~~~I 1127 (1131)
+++++++++.- .+|||+-.+-...++..++++. | +|+.+. .+++++++.+.+
T Consensus 177 ~~~i~~l~~~~-----~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~~~~~ 240 (241)
T 1qo2_A 177 FSLTKKIAIEA-----EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMKRYA 240 (241)
T ss_dssp HHHHHHHHHHH-----TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHhc-----CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHHHHHh
Confidence 88999998752 5899999998889999999998 9 998854 678888776654
No 353
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=30.60 E-value=2.4e+02 Score=26.36 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=51.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACEN-GEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRK 1076 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~n-g~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~ 1076 (1131)
|..|.++|.++...+.+ ...|+.+...+- -.+.++... ....|+|+.-..-+. +-..++..
T Consensus 30 g~~v~vid~~~~~~~~~----~~~g~~~i~gd~~~~~~l~~a~-------------i~~ad~vi~~~~~~~-~n~~~~~~ 91 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDEL----RERGVRAVLGNAANEEIMQLAH-------------LECAKWLILTIPNGY-EAGEIVAS 91 (140)
T ss_dssp TCCEEEEESCHHHHHHH----HHTTCEEEESCTTSHHHHHHTT-------------GGGCSEEEECCSCHH-HHHHHHHH
T ss_pred CCCEEEEECCHHHHHHH----HHcCCCEEECCCCCHHHHHhcC-------------cccCCEEEEECCChH-HHHHHHHH
Confidence 44677777776544332 235666544321 122333221 125788887543221 22345566
Q ss_pred HhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1077 IREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1077 IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+|+. .+.++||+... +.+......++|+|..+.
T Consensus 92 a~~~----~~~~~iiar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 92 ARAK----NPDIEIIARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp HHHH----CSSSEEEEEES--SHHHHHHHHHTTCSEEEE
T ss_pred HHHH----CCCCeEEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 7665 34567887764 355666777899997765
No 354
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=30.59 E-value=2e+02 Score=29.89 Aligned_cols=54 Identities=28% Similarity=0.268 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE------CCCCHHHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG------KPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~------KP~~~~~L~~~I~~ 1129 (1131)
++.++++++. ..+|||+-.+-...++..+++++|+|+++. .|++++++.+.++.
T Consensus 184 ~~~~~~l~~~-----~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~~~~l~~ 243 (253)
T 1thf_D 184 TEMIRFVRPL-----TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKK 243 (253)
T ss_dssp HHHHHHHGGG-----CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHh-----cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8889999863 268999998888889999999999999864 46678777776653
No 355
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=29.34 E-value=4.2e+02 Score=29.14 Aligned_cols=45 Identities=18% Similarity=0.063 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1067 IMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1067 ~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+....++++.+++.- .++|||+-.+-.+.++..+++.+|||.+..
T Consensus 235 g~~~~~~l~~v~~~~----~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 235 GISTAASLAEIRSEF----PASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp SCCHHHHHHHHHHHC----TTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CccHHHHHHHHHHhc----CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 345678888887631 369999999999999999999999998864
No 356
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=28.79 E-value=96 Score=33.70 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=47.4
Q ss_pred CCCeEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHH--
Q 042553 997 RGKKILVADDSMM---LRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGY-- 1071 (1131)
Q Consensus 997 ~~~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~-- 1071 (1131)
.|.+|++++-+.. ..+.+....+..|..+..+.++.+.-..+... ..||+||+| .|+.+..
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~------------~~~dlvIiD--T~G~~~~~~ 198 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF------------SEYDHVFVD--TAGRNFKDP 198 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG------------GGSSEEEEE--CCCCCTTSH
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh------------cCCCEEEEe--CCCCChhhH
Confidence 3568999988762 22334444455665554455554433333321 258999999 5666543
Q ss_pred HHHHHHhhhhccCCCCccEEEEcccCCHHHHHH
Q 042553 1072 EATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104 (1131)
Q Consensus 1072 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~ 1104 (1131)
..+..+++.-....++-.++++.+.....+..+
T Consensus 199 ~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~ 231 (296)
T 2px0_A 199 QYIDELKETIPFESSIQSFLVLSATAKYEDMKH 231 (296)
T ss_dssp HHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHH
T ss_pred HHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHH
Confidence 334444433211112223556634444444444
No 357
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=28.48 E-value=2.9e+02 Score=30.96 Aligned_cols=87 Identities=13% Similarity=0.017 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCC----C-CCCHHHHHHHHhhhhccC
Q 042553 1012 RVAEINLRHLGATVE--ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEM----P-IMNGYEATRKIREEEKRN 1084 (1131)
Q Consensus 1012 ~~l~~~L~~~g~~v~--~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~M----P-~mdG~e~~r~IR~~~~~~ 1084 (1131)
+.+..+-+..+..+. .+.+.++|..+.+. ..|.|.+.-+- . ...-++++.++++.-
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~--------------Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~--- 277 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH--------------GAAGIIVSNHGARQLDYVPATIMALEEVVKAA--- 277 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT--------------TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHT---
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc--------------CCCEEEECCCCCccCCCcccHHHHHHHHHHHh---
Confidence 334444444454433 35677777666654 36777663211 1 123467788887642
Q ss_pred CCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1085 QVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1085 ~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..++|||+-.+-...++..+++.+|||....
T Consensus 278 ~~~ipvia~GGI~~~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 278 QGRIPVFLDGGVRRGTDVFKALALGAAGVFI 308 (370)
T ss_dssp TTSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCCCEEee
Confidence 2269999999999999999999999998754
No 358
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.31 E-value=73 Score=32.64 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=47.1
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC--------CCHHHHHHHHhhhhccCCCCccEEEEccc
Q 042553 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI--------MNGYEATRKIREEEKRNQVHIPIIALTAH 1096 (1131)
Q Consensus 1025 v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~--------mdG~e~~r~IR~~~~~~~~~ipIIalTa~ 1096 (1131)
...+.+.+|+..+. . ..|.|+++--.|. .-|++.++++++.- ..++|+|++-+-
T Consensus 92 g~s~~t~~e~~~A~-~--------------GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~---~~~iPviaiGGI 153 (210)
T 3ceu_A 92 SCSCHSVEEVKNRK-H--------------FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAK---IIDSKVMALGGI 153 (210)
T ss_dssp EEEECSHHHHHTTG-G--------------GSSEEEECCCC---------CCCCHHHHHHHHHTT---CSSTTEEEESSC
T ss_pred EEecCCHHHHHHHh-h--------------CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhc---CCCCCEEEECCC
Confidence 34567777765553 2 4788887755432 23678888876531 036899998776
Q ss_pred CCHHHHHHHHHcCCCEE
Q 042553 1097 ISGEEADKTIEAGMDVH 1113 (1131)
Q Consensus 1097 ~~~~~~~~~l~aG~d~y 1113 (1131)
. .+...+++++|++++
T Consensus 154 ~-~~nv~~~~~~Ga~gV 169 (210)
T 3ceu_A 154 N-EDNLLEIKDFGFGGA 169 (210)
T ss_dssp C-TTTHHHHHHTTCSEE
T ss_pred C-HHHHHHHHHhCCCEE
Confidence 5 677888999999987
No 359
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=28.08 E-value=2.8e+02 Score=30.68 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=51.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE-CCCCHHHHHHHHHH
Q 042553 1055 PYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG-KPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1055 ~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-KP~~~~~L~~~I~~ 1129 (1131)
.+|.|++|+.-...+--++.+.++..........++++=+...+..+...++++|+++.+. |=-+.+++..+.+.
T Consensus 63 GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~saee~~~~~~~ 138 (339)
T 1izc_A 63 KPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKE 138 (339)
T ss_dssp CCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 6999999997766666666666765432111125666667777788999999999997544 44567777766554
No 360
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=27.80 E-value=1.2e+02 Score=32.96 Aligned_cols=72 Identities=8% Similarity=-0.050 Sum_probs=50.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCC-CCHHHHHHH
Q 042553 998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPI-MNGYEATRK 1076 (1131)
Q Consensus 998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~-mdG~e~~r~ 1076 (1131)
+.++.+||-++...+.++..++...-.-+...|+.+++..+... ..++|+||+|----. .+.-.+++.
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~-----------~~~fdLVfiDPPYe~k~~~~~vl~~ 181 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPP-----------PEKRGLIFIDPSYERKEEYKEIPYA 181 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSC-----------TTSCEEEEECCCCCSTTHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCC-----------CCCccEEEECCCCCCCcHHHHHHHH
Confidence 46899999999999999888876544455678999998877532 125999999953322 244455556
Q ss_pred Hhhh
Q 042553 1077 IREE 1080 (1131)
Q Consensus 1077 IR~~ 1080 (1131)
|.+.
T Consensus 182 L~~~ 185 (283)
T 2oo3_A 182 IKNA 185 (283)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6553
No 361
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=27.70 E-value=98 Score=33.77 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=40.0
Q ss_pred HHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1072 EATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1072 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+++++.|+. .+..||.+-... .++..+++++|+|-.+.--++++++.++++.+
T Consensus 196 ~Av~~ar~~----~p~~kIeVEv~t--l~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 196 LAIQRLRKN----LKNEYIAIECDN--ISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHH----SSSCCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHh----CCCCCEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 344455543 234678776654 58888999999999999999999999998754
No 362
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=27.36 E-value=1.3e+02 Score=35.22 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=42.0
Q ss_pred CccEEEEcCCCCCCCH-HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1055 PYDYILMDCEMPIMNG-YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1055 ~~DlILmDi~MP~mdG-~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.+|+|.+|...|...+ .+.++++|+. .+.+||++-+ -...+....+.++|+|....
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~----~p~~~Vi~g~-v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAA----YPHLEIIGGN-VATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHH----CTTCCEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHH----CCCceEEEcc-cCcHHHHHHHHHhCCCEEEE
Confidence 5899999998876543 5788888875 2367887732 34567888899999998875
No 363
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=27.17 E-value=1.4e+02 Score=30.95 Aligned_cols=86 Identities=23% Similarity=0.225 Sum_probs=59.8
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEE------EcCCCCCCCHHHHHHHHhhhhccCC
Q 042553 1014 AEINLRHLGA--TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL------MDCEMPIMNGYEATRKIREEEKRNQ 1085 (1131)
Q Consensus 1014 l~~~L~~~g~--~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlIL------mDi~MP~mdG~e~~r~IR~~~~~~~ 1085 (1131)
....|++.|. .++.+-+..||+...+.+ .++|= -|+ +.||.+++++|++.-+..+
T Consensus 94 A~~~L~~~GI~vn~TlifS~~Qa~~Aa~AG--------------a~yISPfvgRi~d~---~~dG~~~v~~i~~~~~~~~ 156 (212)
T 3r8r_A 94 AVRALTDLGIKTNVTLIFNANQALLAARAG--------------ATYVSPFLGRLDDI---GHNGLDLISEVKQIFDIHG 156 (212)
T ss_dssp HHHHHHHTTCCEEEEEECSHHHHHHHHHHT--------------CSEEEEBHHHHHHT---TSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCcEEEEEeCCHHHHHHHHHcC--------------CeEEEeccchhhhc---CCChHHHHHHHHHHHHHcC
Confidence 3455677785 567789999999888764 33331 244 5799999999998766555
Q ss_pred CCccEEEEcccCCHHHHHHHHHcCCCEEEECCC
Q 042553 1086 VHIPIIALTAHISGEEADKTIEAGMDVHLGKPL 1118 (1131)
Q Consensus 1086 ~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~ 1118 (1131)
.++.|++-+ --...+..+|..+|+| +++=|.
T Consensus 157 ~~t~ilaAS-~R~~~~v~~~a~~G~d-~~Tip~ 187 (212)
T 3r8r_A 157 LDTQIIAAS-IRHPQHVTEAALRGAH-IGTMPL 187 (212)
T ss_dssp CCCEEEEBS-CCSHHHHHHHHHTTCS-EEEECH
T ss_pred CCCEEEEec-CCCHHHHHHHHHcCCC-EEEcCH
Confidence 555555443 4467788899999999 556553
No 364
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=26.85 E-value=3.5e+02 Score=30.11 Aligned_cols=88 Identities=10% Similarity=0.023 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCC-----CCCCHHHHHHHHhhhhcc
Q 042553 1011 RRVAEINLRHLGA--TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEM-----PIMNGYEATRKIREEEKR 1083 (1131)
Q Consensus 1011 ~~~l~~~L~~~g~--~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~M-----P~mdG~e~~r~IR~~~~~ 1083 (1131)
.+.++.+-+..+. .+..+.+.++|..+.+. ..|.|.+.-+- -....++++.++++.-
T Consensus 206 w~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~--------------GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av-- 269 (352)
T 3sgz_A 206 WNDLSLLQSITRLPIILKGILTKEDAELAMKH--------------NVQGIVVSNHGGRQLDEVSASIDALREVVAAV-- 269 (352)
T ss_dssp HHHHHHHHHHCCSCEEEEEECSHHHHHHHHHT--------------TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcCCCEEEEecCcHHHHHHHHHc--------------CCCEEEEeCCCCCccCCCccHHHHHHHHHHHh--
Confidence 3444444444343 34456777777776654 36777663211 1234578888887642
Q ss_pred CCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1084 NQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1084 ~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..++|||+-.+-.+..+..+++.+||+....
T Consensus 270 -~~~ipVia~GGI~~g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 270 -KGKIEVYMDGGVRTGTDVLKALALGARCIFL 300 (352)
T ss_dssp -TTSSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred -CCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 2269999999999999999999999998754
No 365
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=26.54 E-value=69 Score=33.50 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=52.4
Q ss_pred HHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH-------HHHHHHHhhhhccCCCC
Q 042553 1015 EINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG-------YEATRKIREEEKRNQVH 1087 (1131)
Q Consensus 1015 ~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG-------~e~~r~IR~~~~~~~~~ 1087 (1131)
...+++.|..+..+-+...-++.++.-. ...|+|++...-|+.+| ++-++++|+. ..+
T Consensus 105 i~~i~~~G~k~gval~p~t~~e~l~~~l-----------~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~----~~~ 169 (228)
T 3ovp_A 105 IKDIRENGMKVGLAIKPGTSVEYLAPWA-----------NQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQ----FPS 169 (228)
T ss_dssp HHHHHHTTCEEEEEECTTSCGGGTGGGG-----------GGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHH----CTT
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHh-----------ccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHh----cCC
Confidence 3445677877666544332233332210 13788887776788776 3446666654 224
Q ss_pred ccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1088 IPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1088 ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++ |.+.+--..+....+.++|+|.++.
T Consensus 170 ~~-I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 170 LD-IEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp CE-EEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred CC-EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 55 4566666778888999999999865
No 366
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=26.45 E-value=1.3e+02 Score=29.89 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=30.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHH--hCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC
Q 042553 997 RGKKILVADDSMMLRRVAEINLR--HLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCE 1064 (1131)
Q Consensus 997 ~~~~ILvvdD~~~~~~~l~~~L~--~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~ 1064 (1131)
.|++||++|=|+-. -+...+. ..++.+..+.. ....+.+..- ...||+||+|+-
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l-----------~~~yD~viiD~~ 84 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKD-----------LADYDFAIVDGA 84 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHH-----------TTTSSEEEEECC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHh-----------cCCCCEEEEECC
Confidence 46789999987532 2233333 23466666554 2222233221 125999999973
No 367
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=26.29 E-value=3.3e+02 Score=30.45 Aligned_cols=42 Identities=10% Similarity=-0.099 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..+++..++.. ..++|||+-.+-.+..+..+++.+|||....
T Consensus 265 t~~~L~~v~~~----~~~ipvia~GGI~~g~Dv~KaLalGAdaV~i 306 (365)
T 3sr7_A 265 TAQVLLNAQPL----MDKVEILASGGIRHPLDIIKALVLGAKAVGL 306 (365)
T ss_dssp HHHHHHHHGGG----TTTSEEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHh----cCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34566655543 2368999988888999999999999998754
No 368
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=26.03 E-value=32 Score=33.99 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=21.7
Q ss_pred eeecccCccCcccccccccC-CCCCCCchh
Q 042553 128 YKQPVDRDTGKLYGEAIVTK-PSSVSTSTW 156 (1131)
Q Consensus 128 ~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~ 156 (1131)
.-|||||+||+.|.+.+-.. ...+.|.+|
T Consensus 61 VLqaV~p~TG~~y~~~T~P~~G~lL~N~~Y 90 (187)
T 3kcp_B 61 VLMAVDPETGKEFTSSTFPPGRTVLKNNAY 90 (187)
T ss_dssp TEEEECTTTCCBCCTTCCCCCCCSSCCGGG
T ss_pred HeeecccCcCCccccccCCCCceecccCcc
Confidence 47999999999999877644 444666554
No 369
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=25.48 E-value=82 Score=32.21 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=45.4
Q ss_pred CccEEEEcCCCCCCCHH-------HHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE-----CCCCHHH
Q 042553 1055 PYDYILMDCEMPIMNGY-------EATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG-----KPLNRDH 1122 (1131)
Q Consensus 1055 ~~DlILmDi~MP~mdG~-------e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~-----KP~~~~~ 1122 (1131)
..|.|+.+...|+.+|. +-++++|+.......++||++- +--..+...++.++|+|.++. +.-++.+
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~-GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~ 209 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVD-GGVDNKTIRACYEAGANVFVAGSYLFKASDLVS 209 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEE-SSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEE-CcCCHHHHHHHHHcCCCEEEEChHHhCCCCHHH
Confidence 37889888777776653 4456666543211225676654 444467777789999998854 5556655
Q ss_pred HHHHHH
Q 042553 1123 LMEAIK 1128 (1131)
Q Consensus 1123 L~~~I~ 1128 (1131)
-.+.++
T Consensus 210 a~~~~~ 215 (220)
T 2fli_A 210 QVQTLR 215 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 370
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=24.71 E-value=1.1e+02 Score=33.59 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=33.5
Q ss_pred CccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1087 HIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1087 ~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
..||++.... .++..+++++|+|..+.-.+++++|.++++.+
T Consensus 231 ~~kIeVEVdt--ldea~eAl~aGaD~I~LDn~~~~~l~~av~~l 272 (320)
T 3paj_A 231 GKPVEVETET--LAELEEAISAGADIIMLDNFSLEMMREAVKIN 272 (320)
T ss_dssp TSCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred CCeEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4577776643 46778899999999999999999999888754
No 371
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=24.31 E-value=1.2e+02 Score=32.78 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=38.8
Q ss_pred HHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1072 EATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1072 e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+++++.|+. .+..||.+-.. +.++..+++++|+|-.+...++++++.++++.+
T Consensus 187 ~Av~~ar~~----~~~~~IeVEv~--tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 187 KAVTKAKKL----DSNKVVEVEVT--NLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp HHHHHHHHH----CTTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHhh----CCCCcEEEEeC--CHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 344455543 23467776544 347888999999999999999999999988754
No 372
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=23.76 E-value=39 Score=33.04 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=21.2
Q ss_pred eeecccCccCcccccccccC-CCCCCCchh
Q 042553 128 YKQPVDRDTGKLYGEAIVTK-PSSVSTSTW 156 (1131)
Q Consensus 128 ~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~ 156 (1131)
.-|||||+||+.|.+.+-.. ...|.|.+|
T Consensus 49 VLqaVn~~tG~~~~~~t~P~~gtlL~n~~Y 78 (166)
T 2bm3_A 49 VLMAVDPETGKEFTSSTFPPGRTVLKNNAY 78 (166)
T ss_dssp TEEEECTTTCCBCCTTCCCCCCSSSCCGGG
T ss_pred ceEeecCCcCCccccccCCCCCcccccCCc
Confidence 47999999999998877644 444555544
No 373
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=23.36 E-value=65 Score=34.19 Aligned_cols=88 Identities=10% Similarity=0.157 Sum_probs=51.7
Q ss_pred HHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH-------HHHHHHHhhhhccCCCCc
Q 042553 1016 INLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG-------YEATRKIREEEKRNQVHI 1088 (1131)
Q Consensus 1016 ~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG-------~e~~r~IR~~~~~~~~~i 1088 (1131)
...++.|..+..+-+...-++.++.-. ...|+|++=.--|+..| ++-++++|+.-...+.++
T Consensus 128 ~~ir~~G~k~Gvalnp~Tp~e~l~~~l-----------~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~ 196 (246)
T 3inp_A 128 QLIKSFGIQAGLALNPATGIDCLKYVE-----------SNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDI 196 (246)
T ss_dssp HHHHTTTSEEEEEECTTCCSGGGTTTG-----------GGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHH-----------hcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCe
Confidence 344778887776655443333333210 13677765344576665 455666665432223345
Q ss_pred cEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1089 PIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1089 pIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+ |.+.+--..+....+.++|||.++.
T Consensus 197 ~-I~VDGGI~~~ti~~~~~aGAD~~V~ 222 (246)
T 3inp_A 197 L-LEIDGGVNPYNIAEIAVCGVNAFVA 222 (246)
T ss_dssp E-EEEESSCCTTTHHHHHTTTCCEEEE
T ss_pred e-EEEECCcCHHHHHHHHHcCCCEEEE
Confidence 4 5566666677888999999999876
No 374
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=23.16 E-value=53 Score=33.38 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=31.9
Q ss_pred EcCCCCC--CCHHHHHHHHhhhhccCCCCccEEE--EcccCCHHHHHHHHHcCCCEEEECCC
Q 042553 1061 MDCEMPI--MNGYEATRKIREEEKRNQVHIPIIA--LTAHISGEEADKTIEAGMDVHLGKPL 1118 (1131)
Q Consensus 1061 mDi~MP~--mdG~e~~r~IR~~~~~~~~~ipIIa--lTa~~~~~~~~~~l~aG~d~yL~KP~ 1118 (1131)
+++.+|- .+|.+.++.||+. .+..||++ .+.+........+.++|+|....=+.
T Consensus 29 iev~~~~~~~~g~~~i~~l~~~----~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~ 86 (207)
T 3ajx_A 29 IELGTPLIKAEGLSVITAVKKA----HPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGS 86 (207)
T ss_dssp EEECHHHHHHHCTHHHHHHHHH----STTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred EEECcHHHHhhCHHHHHHHHHh----CCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEecc
Confidence 5555542 4567788888864 12467774 44321223367788889887764443
No 375
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=23.01 E-value=1.5e+02 Score=30.97 Aligned_cols=85 Identities=19% Similarity=0.136 Sum_probs=58.9
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEE------EcCCCCCCCHHHHHHHHhhhhccCC
Q 042553 1014 AEINLRHLGA--TVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYIL------MDCEMPIMNGYEATRKIREEEKRNQ 1085 (1131)
Q Consensus 1014 l~~~L~~~g~--~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlIL------mDi~MP~mdG~e~~r~IR~~~~~~~ 1085 (1131)
....|++.|. .++.+-+..||+...+.+ .++|= -|+ +.||.+++++|++.-+.++
T Consensus 96 A~~~L~~~GI~vn~TlifS~~QA~~Aa~AG--------------a~yISPfvgRi~d~---g~dG~~~v~~i~~~~~~~~ 158 (223)
T 3s1x_A 96 AIKTLSSEHINTNCTLVFNPIQALLAAKAG--------------VTYVSPFVGRLDDI---GEDGMQIIDMIRTIFNNYI 158 (223)
T ss_dssp HHHHHHHTTCCEEEEEECSHHHHHHHHHTT--------------CSEEEEBSHHHHHT---TSCTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCcEEEEEeCCHHHHHHHHHcC--------------CeEEEeecchHhhc---CCCHHHHHHHHHHHHHHcC
Confidence 3455677785 567789999999988753 33331 144 4689999999988766655
Q ss_pred CCccEEEEcccCCHHHHHHHHHcCCCEEEECC
Q 042553 1086 VHIPIIALTAHISGEEADKTIEAGMDVHLGKP 1117 (1131)
Q Consensus 1086 ~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP 1117 (1131)
.++.|++-+ --...+..+|..+|+|- ++=|
T Consensus 159 ~~T~IlaAS-~Rn~~~v~~aa~~G~d~-~Tip 188 (223)
T 3s1x_A 159 IKTQILVAS-IRNPIHVLRSAVIGADV-VTVP 188 (223)
T ss_dssp CCSEEEEBS-CCSHHHHHHHHHHTCSE-EEEC
T ss_pred CCCEEEEEe-CCCHHHHHHHHHcCCCE-EEeC
Confidence 566655544 44577888999999996 4534
No 376
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=22.84 E-value=1.2e+02 Score=32.19 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC--CCC--------------------HHHHHHHHhhhhccCCCCcc
Q 042553 1032 EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP--IMN--------------------GYEATRKIREEEKRNQVHIP 1089 (1131)
Q Consensus 1032 ~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP--~md--------------------G~e~~r~IR~~~~~~~~~ip 1089 (1131)
.+.++.+.+. ..|.|-++.-.+ .|| +++.++++|+ ..++|
T Consensus 35 ~~~~~~l~~~-------------Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~-----~~~~P 96 (262)
T 1rd5_A 35 AEALRLLDGC-------------GADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTP-----ELSCP 96 (262)
T ss_dssp HHHHHHHHHT-------------TCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGG-----GCSSC
T ss_pred HHHHHHHHHc-------------CCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-----cCCCC
Q ss_pred EEEEcccCCHH--HHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553 1090 IIALTAHISGE--EADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus 1090 IIalTa~~~~~--~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
+++++-..... ....|.++|+|+++.-....+++.+.++.+
T Consensus 97 v~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 97 VVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp EEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred EEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
No 377
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=22.72 E-value=2.2e+02 Score=30.70 Aligned_cols=53 Identities=15% Similarity=0.335 Sum_probs=38.3
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE------ECCCCHHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL------GKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL------~KP~~~~~L~~~I~ 1128 (1131)
++.++++|+. .++|||+..+-.+.++..+++++|||... ..|.-..++.+.++
T Consensus 230 ~~~i~~i~~~-----~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~ 288 (311)
T 1ep3_A 230 LKLIHQVAQD-----VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLP 288 (311)
T ss_dssp HHHHHHHHTT-----CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHh-----cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHH
Confidence 4677777753 26899998887789999999999999873 34554555544443
No 378
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=22.49 E-value=69 Score=33.60 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=55.0
Q ss_pred HHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCH-------HHHHHHHhhhhccCC
Q 042553 1013 VAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNG-------YEATRKIREEEKRNQ 1085 (1131)
Q Consensus 1013 ~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG-------~e~~r~IR~~~~~~~ 1085 (1131)
.+....++.|..+..+-|...-++.++.-. ...|+|++=-.-|+..| ++-++++|+.....+
T Consensus 97 ~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l-----------~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~ 165 (231)
T 3ctl_A 97 RLIDEIRRHDMKVGLILNPETPVEAMKYYI-----------HKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREG 165 (231)
T ss_dssp HHHHHHHHTTCEEEEEECTTCCGGGGTTTG-----------GGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCeEEEEEECCCcHHHHHHHH-----------hcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccC
Confidence 344556678888766655443333332210 14788764222354444 556677776543223
Q ss_pred CCccEEEEcccCCHHHHHHHHHcCCCEEEEC
Q 042553 1086 VHIPIIALTAHISGEEADKTIEAGMDVHLGK 1116 (1131)
Q Consensus 1086 ~~ipIIalTa~~~~~~~~~~l~aG~d~yL~K 1116 (1131)
.+++ |.+.+--..+...++.++|+|.++.=
T Consensus 166 ~~~~-I~VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 166 LEYE-IEVDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp CCCE-EEEESCCSTTTHHHHHHHTCCEEEEC
T ss_pred CCce-EEEECCcCHHHHHHHHHcCCCEEEEc
Confidence 3455 55667667788889999999999886
No 379
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=22.48 E-value=1.1e+02 Score=33.37 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=46.0
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHH
Q 042553 1025 VEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADK 1104 (1131)
Q Consensus 1025 v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~ 1104 (1131)
...+.+.+|+.+++.. ..|+|++|-.-| +.++++.+.-+ .+ ..|..|+.-..+....
T Consensus 211 eVEv~tl~e~~eAl~a--------------GaDiImLDn~s~-----~~l~~av~~~~---~~-v~leaSGGIt~~~i~~ 267 (300)
T 3l0g_A 211 AIECDNISQVEESLSN--------------NVDMILLDNMSI-----SEIKKAVDIVN---GK-SVLEVSGCVNIRNVRN 267 (300)
T ss_dssp EEEESSHHHHHHHHHT--------------TCSEEEEESCCH-----HHHHHHHHHHT---TS-SEEEEESSCCTTTHHH
T ss_pred EEEECCHHHHHHHHHc--------------CCCEEEECCCCH-----HHHHHHHHhhc---Cc-eEEEEECCCCHHHHHH
Confidence 4568999999999986 489999995332 23332222211 13 3677888888888888
Q ss_pred HHHcCCCEEE
Q 042553 1105 TIEAGMDVHL 1114 (1131)
Q Consensus 1105 ~l~aG~d~yL 1114 (1131)
..+.|+|.+-
T Consensus 268 ~A~tGVD~Is 277 (300)
T 3l0g_A 268 IALTGVDYIS 277 (300)
T ss_dssp HHTTTCSEEE
T ss_pred HHHcCCCEEE
Confidence 8899998653
No 380
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=22.45 E-value=2.5e+02 Score=30.28 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=31.8
Q ss_pred CCeEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCC
Q 042553 998 GKKILVADDSMM---LRRVAEINLRHLGATVEACE---NG----EAALQLVRSGLNDQRDLGAPHILPYDYILMDCE 1064 (1131)
Q Consensus 998 ~~~ILvvdD~~~---~~~~l~~~L~~~g~~v~~a~---ng----~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~ 1064 (1131)
+.+|+++|-+.- ....+....+..|..+..+. +. ..+++.+.. ..||+||+|.-
T Consensus 126 ~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~-------------~~~D~viiDtp 189 (295)
T 1ls1_A 126 GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL-------------EARDLILVDTA 189 (295)
T ss_dssp TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH-------------HTCCEEEEECC
T ss_pred CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHh-------------CCCCEEEEeCC
Confidence 567999987742 22223344555677776543 33 234554432 15999999974
No 381
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=22.20 E-value=1.3e+02 Score=31.21 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=52.8
Q ss_pred HHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCC-------CHHHHHHHHhhhhccC
Q 042553 1015 EINLRHLGATVEACE---NGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM-------NGYEATRKIREEEKRN 1084 (1131)
Q Consensus 1015 ~~~L~~~g~~v~~a~---ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~m-------dG~e~~r~IR~~~~~~ 1084 (1131)
...+++.|..+..+- +..++++.+.. ..|.|++=...|+. .+++-++++|+.....
T Consensus 105 ~~~i~~~g~~~gv~~~p~t~~e~~~~~~~--------------~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~ 170 (230)
T 1tqj_A 105 LCQIRELGKKAGAVLNPSTPLDFLEYVLP--------------VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDER 170 (230)
T ss_dssp HHHHHHTTCEEEEEECTTCCGGGGTTTGG--------------GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEEeCCCcHHHHHHHHh--------------cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhc
Confidence 344456787665543 44455544433 36777765556653 3467778887754322
Q ss_pred CCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1085 QVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1085 ~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
+..+||.+--+-. .+....+.++|+|.++.
T Consensus 171 ~~~~~I~v~GGI~-~~~~~~~~~aGad~vvv 200 (230)
T 1tqj_A 171 GLDPWIEVDGGLK-PNNTWQVLEAGANAIVA 200 (230)
T ss_dssp TCCCEEEEESSCC-TTTTHHHHHHTCCEEEE
T ss_pred CCCCcEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 3467887766544 46777889999999865
No 382
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=21.96 E-value=1.8e+02 Score=32.58 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=38.8
Q ss_pred CccEEEEcCCCCCCCH-HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1055 PYDYILMDCEMPIMNG-YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1055 ~~DlILmDi~MP~mdG-~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.+|+|.+|........ ++.+++||+.- +.+|||+=+ -.+.++...+.++|+|....
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~----~~~~Vi~G~-V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLL----GSRCIMAGN-VATYAGADYLASCGADIIKA 168 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHH----TTCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhc----CCCeEEEcC-cCCHHHHHHHHHcCCCEEEE
Confidence 4788888875533222 56788888752 357888721 24578888999999998875
No 383
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=21.83 E-value=1.2e+02 Score=31.97 Aligned_cols=40 Identities=30% Similarity=0.236 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++.+++|++. ..+|+++..+-.+.++..+++++|+|..+.
T Consensus 63 ~~~i~~i~~~-----~~iPvi~~ggi~~~~~i~~~~~~Gad~v~l 102 (266)
T 2w6r_A 63 TEMIRFVRPL-----TTLPIIASGGAGKMEHFLEAFLAGADKALA 102 (266)
T ss_dssp HHHHHHHGGG-----CCSCEEEESCCCSTHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHHh-----cCCCEEEECCCCCHHHHHHHHHcCCcHhhh
Confidence 6888888763 368999988777778889999999998765
No 384
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=21.81 E-value=1.4e+02 Score=30.17 Aligned_cols=81 Identities=6% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEE
Q 042553 1014 AEINLRHLGATVE-ACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIA 1092 (1131)
Q Consensus 1014 l~~~L~~~g~~v~-~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIa 1092 (1131)
+....++.|..+. .+.++.++...+..+ .|+|-..-..+. |.+.++++++. .+++||++
T Consensus 96 ~~~~~~~~g~~vi~g~~t~~e~~~a~~~G--------------ad~vk~~~~~~~--g~~~~~~l~~~----~~~~pvia 155 (205)
T 1wa3_A 96 ISQFCKEKGVFYMPGVMTPTELVKAMKLG--------------HTILKLFPGEVV--GPQFVKAMKGP----FPNVKFVP 155 (205)
T ss_dssp HHHHHHHHTCEEECEECSHHHHHHHHHTT--------------CCEEEETTHHHH--HHHHHHHHHTT----CTTCEEEE
T ss_pred HHHHHHHcCCcEECCcCCHHHHHHHHHcC--------------CCEEEEcCcccc--CHHHHHHHHHh----CCCCcEEE
Q ss_pred EcccCCHHHHHHHHHcCCCEEEE
Q 042553 1093 LTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1093 lTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
..+-. .+...+++++|+|.+..
T Consensus 156 ~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 156 TGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp BSSCC-TTTHHHHHHHTCSCEEE
T ss_pred cCCCC-HHHHHHHHHCCCCEEEE
No 385
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=21.74 E-value=1.9e+02 Score=29.20 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=28.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHH
Q 042553 999 KKILVADDSMMLRRVAEINLRHLGATVEACENGEA 1033 (1131)
Q Consensus 999 ~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~e 1033 (1131)
++|+|+|=-.-|...+...|++.|+++....+.++
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~ 37 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISRDPQV 37 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHH
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHH
Confidence 36999986555667788889999999999888654
No 386
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=21.21 E-value=2.4e+02 Score=29.04 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=38.3
Q ss_pred ccEEEEcCCCCCCC-------HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1056 YDYILMDCEMPIMN-------GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1056 ~DlILmDi~MP~md-------G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.|.|+++-..|+.. +++-++++|+.. .++||++--+- ..+...++.++|+|.++.
T Consensus 139 ~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~----~~~pi~v~GGI-~~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 139 VELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY----PSLDIEVDGGL-GPSTIDVAASAGANCIVA 200 (228)
T ss_dssp CSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC----TTSEEEEESSC-STTTHHHHHHHTCCEEEE
T ss_pred CCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc----CCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 78999887777633 356667777652 25787765544 446777889999999865
No 387
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=20.86 E-value=3.8e+02 Score=27.65 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=32.0
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
++.++++|+. ..+|+++-..-.+.++..+++++|+|..+.
T Consensus 63 ~~~i~~i~~~-----~~ipvi~~ggI~~~~~~~~~~~~Gad~V~l 102 (253)
T 1thf_D 63 LELVEKVAEQ-----IDIPFTVGGGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp HHHHHHHHTT-----CCSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5566777652 368999988888889999999999998765
No 388
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=20.64 E-value=2e+02 Score=33.15 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=54.0
Q ss_pred CCCeEEEEeCCH---HHHHHHHHHHHhCCCEEEEECCH-------HHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCC
Q 042553 997 RGKKILVADDSM---MLRRVAEINLRHLGATVEACENG-------EAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMP 1066 (1131)
Q Consensus 997 ~~~~ILvvdD~~---~~~~~l~~~L~~~g~~v~~a~ng-------~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP 1066 (1131)
.|++|++++-++ .....+..+-+..|..+.....+ .++++.+.. ..||+||+|.---
T Consensus 127 ~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~-------------~~~DvVIIDTaGr 193 (443)
T 3dm5_A 127 RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS-------------KGVDIIIVDTAGR 193 (443)
T ss_dssp TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH-------------TTCSEEEEECCCC
T ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh-------------CCCCEEEEECCCc
Confidence 467899888664 23344555556678777654332 344555543 2599999995311
Q ss_pred CCCHHHHHHHHhhhhccCCCCccEEEEcccCCH--HHHHHHHH--cCCCE-EEEC
Q 042553 1067 IMNGYEATRKIREEEKRNQVHIPIIALTAHISG--EEADKTIE--AGMDV-HLGK 1116 (1131)
Q Consensus 1067 ~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~--~~~~~~l~--aG~d~-yL~K 1116 (1131)
.....++...+++......++..++++.+.... ....+.+. .+.++ .++|
T Consensus 194 l~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTK 248 (443)
T 3dm5_A 194 HKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTK 248 (443)
T ss_dssp SSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEEC
T ss_pred ccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEEC
Confidence 111123444444322212334445556544322 22233343 45554 3455
No 389
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=20.63 E-value=8.4e+02 Score=26.53 Aligned_cols=89 Identities=20% Similarity=0.132 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHhC-CCEEE-E-ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCC--C-----------
Q 042553 1006 DSMMLRRVAEINLRHL-GATVE-A-CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIM--N----------- 1069 (1131)
Q Consensus 1006 D~~~~~~~l~~~L~~~-g~~v~-~-a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~m--d----------- 1069 (1131)
|.....+.++.+-+.. +..+. - +.+.++|..+.+. ..|.|++-.. ++. +
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a--------------Gad~Ivvs~h-gG~~~~~~~~~~~g~~g 196 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA--------------GADATKVGIG-PGKVCITKIKTGFGTGG 196 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH--------------TCSEEEECSS-CSTTCHHHHHHSCSSTT
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc--------------CCCEEEEecC-CCceeecccccCcCCch
Confidence 4456667777666665 34333 2 6778888888775 3788877322 221 1
Q ss_pred -HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEE
Q 042553 1070 -GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHL 1114 (1131)
Q Consensus 1070 -G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL 1114 (1131)
-++++.++++. ..+|||+-.+-.+..+..+++.+|||...
T Consensus 197 ~~~~~l~~v~~~-----~~ipVIa~GGI~~g~Dv~kalalGAdaV~ 237 (336)
T 1ypf_A 197 WQLAALRWCAKA-----ASKPIIADGGIRTNGDVAKSIRFGATMVM 237 (336)
T ss_dssp CHHHHHHHHHHT-----CSSCEEEESCCCSTHHHHHHHHTTCSEEE
T ss_pred hHHHHHHHHHHH-----cCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 36667777653 26999999998889999999999999864
No 390
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=20.52 E-value=3.4e+02 Score=27.68 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEE
Q 042553 1070 GYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLG 1115 (1131)
Q Consensus 1070 G~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~ 1115 (1131)
.++.++++++. ..+|+++-..-.+.++..+++++|+|....
T Consensus 65 ~~~~i~~i~~~-----~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 65 FIDSVKRVAEA-----VSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp HHHHHHHHHHH-----CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHh-----cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 46677777753 258999888777888889999999998763
No 391
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=20.44 E-value=2.9e+02 Score=28.77 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=66.5
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCC----C-CCCHHHHHHHHhhhhccCCC
Q 042553 1014 AEINLRHLGATVEA--CENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEM----P-IMNGYEATRKIREEEKRNQV 1086 (1131)
Q Consensus 1014 l~~~L~~~g~~v~~--a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~M----P-~mdG~e~~r~IR~~~~~~~~ 1086 (1131)
....|++.|+.+.. +..|...+..+.. .++|.|=+|-.+ . ......+++.|....+..
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L~~-------------l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~-- 208 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYLTR-------------LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDL-- 208 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHHHH-------------SCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHh-------------CCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHC--
Confidence 34567788988655 5567777888876 379999999532 1 222344556565543322
Q ss_pred CccEEEEcccCCHHHHHHHHHcCCCEE----EECCCCHHHHHHHHHH
Q 042553 1087 HIPIIALTAHISGEEADKTIEAGMDVH----LGKPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1087 ~ipIIalTa~~~~~~~~~~l~aG~d~y----L~KP~~~~~L~~~I~~ 1129 (1131)
.+.+| ..+-.+.++...+.+.|++-+ +.||...+++...++.
T Consensus 209 g~~vi-aeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 209 DLEVV-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp TCEEE-ECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred CCeEE-EEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 34444 566677888888999999854 8899999999887764
No 392
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=20.29 E-value=2.4e+02 Score=29.24 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=41.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 042553 1056 YDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIK 1128 (1131)
Q Consensus 1056 ~DlILmDi~MP~mdG~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~ 1128 (1131)
+++|=+.+. .-++++.+++||+.. +. ++|..-.-.+.++.+++.++|++-.++ |-...++.+..+
T Consensus 39 i~~iEvt~~--t~~a~~~I~~l~~~~----p~-~~IGAGTVlt~~~a~~ai~AGA~fivs-P~~~~evi~~~~ 103 (217)
T 3lab_A 39 VHLLEVTLR--TEAGLAAISAIKKAV----PE-AIVGAGTVCTADDFQKAIDAGAQFIVS-PGLTPELIEKAK 103 (217)
T ss_dssp CCEEEEETT--STTHHHHHHHHHHHC----TT-SEEEEECCCSHHHHHHHHHHTCSEEEE-SSCCHHHHHHHH
T ss_pred CCEEEEeCC--CccHHHHHHHHHHHC----CC-CeEeeccccCHHHHHHHHHcCCCEEEe-CCCcHHHHHHHH
Confidence 444444333 447888888888752 23 455554455788899999999986555 655445554443
No 393
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=20.04 E-value=4.9e+02 Score=30.83 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=44.6
Q ss_pred HHHHHHHhhhhccCCCCccEEEEcccCCHHHHHHHHH-cCCCEEEE------CCCCHHHHHHHHHH
Q 042553 1071 YEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE-AGMDVHLG------KPLNRDHLMEAIKY 1129 (1131)
Q Consensus 1071 ~e~~r~IR~~~~~~~~~ipIIalTa~~~~~~~~~~l~-aG~d~yL~------KP~~~~~L~~~I~~ 1129 (1131)
+++++++++. ..+|||+-.+-.+.++..++++ .|+++.+. .|+...++.+.++.
T Consensus 485 ~~li~~l~~~-----~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l~~ 545 (555)
T 1jvn_A 485 LELIEHVKDA-----VKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLE 545 (555)
T ss_dssp HHHHHHHHHH-----CSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHh-----CCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 7889999864 3689999888888999999998 89999865 58899988887653
Done!