BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042555
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 28/248 (11%)
Query: 49 KPNLLLLHGFG--ANAMWQYGEFLRHFTPRFNVYVPDLVFFG-----ESYTTRADRTESF 101
P ++LLHG G A+A + + F V PDL+ FG E+Y
Sbjct: 29 SPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIMSWVGM 88
Query: 102 QARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCS-GVCLEENDMEE 160
+ ++ LM F +++ +VG S GG V L + P+ +KV L S G +
Sbjct: 89 RVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARP--- 145
Query: 161 GLFPVTDIDEAANILVPQTPDKL---RDLIRFSFVNSKPVRGVPSCFLTDFIDVMCTEYV 217
E A +L +L R+LI + + G+ + F E
Sbjct: 146 --------PELARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVR 197
Query: 218 QEKRELIETILKDRKFCNLP-----KIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARL 272
+ + + E++ + +P ++ L+ G QD+I PL+ L +H+ + A L
Sbjct: 198 RIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDRIVPLDTSLYLTKHL-KHAEL 256
Query: 273 VIIENTGH 280
V+++ GH
Sbjct: 257 VVLDRCGH 264
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 102/240 (42%), Gaps = 35/240 (14%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPR-FNVYVPDLVFFGESYTTRADRTESF---QARCVM 107
+LLL G + +G L++ + F V D +G S D F A+ +
Sbjct: 26 VLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAV 85
Query: 108 RLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEEND--MEEGLFPV 165
LM+ K++SL+G S GG AA++P + K+V+ + + + D + EG
Sbjct: 86 DLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEG---- 141
Query: 166 TDIDEAANILVPQTPDKLRDLIRFSFVNSKPVRGVPSCFLTDFIDVMCTEYVQEKRELIE 225
+RD+ ++S KP+ + + D+ C ++V R+
Sbjct: 142 -----------------IRDVSKWSERTRKPLE---ALYGYDYFARTCEKWVDGIRQFKH 181
Query: 226 TILKDRKFCN--LPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTGHAVN 283
L D C LP++ LI+ GE+D + P + +H+ + +RL ++ H ++
Sbjct: 182 --LPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHV-KGSRLHLMPEGKHNLH 238
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 102/240 (42%), Gaps = 35/240 (14%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPR-FNVYVPDLVFFGESYTTRADRTESF---QARCVM 107
+LLL G + +G L++ + F V D +G S D F A+ +
Sbjct: 26 VLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAV 85
Query: 108 RLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEEND--MEEGLFPV 165
LM+ K++SL+G S GG AA++P + K+V+ + + + D + EG
Sbjct: 86 DLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEG---- 141
Query: 166 TDIDEAANILVPQTPDKLRDLIRFSFVNSKPVRGVPSCFLTDFIDVMCTEYVQEKRELIE 225
+RD+ ++S KP+ + + D+ C ++V R+
Sbjct: 142 -----------------IRDVSKWSERTRKPLE---ALYGYDYFARTCEKWVDGIRQFKH 181
Query: 226 TILKDRKFCN--LPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTGHAVN 283
L D C LP++ LI+ GE+D + P + +H+ + +RL ++ H ++
Sbjct: 182 --LPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHV-KGSRLHLMPEGKHNLH 238
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 35/240 (14%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPR-FNVYVPDLVFFGESYTTRADRTESF---QARCVM 107
+LLL G + +G L++ + F V D +G S D F A+ +
Sbjct: 26 VLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAV 85
Query: 108 RLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEEND--MEEGLFPV 165
LM+ K++SL+G + GG AA++P + K+V+ + + + D + EG
Sbjct: 86 DLMKALKFKKVSLLGWADGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEG---- 141
Query: 166 TDIDEAANILVPQTPDKLRDLIRFSFVNSKPVRGVPSCFLTDFIDVMCTEYVQEKRELIE 225
+RD+ ++S KP+ + + D+ C ++V R+
Sbjct: 142 -----------------IRDVSKWSERTRKPLE---ALYGYDYFARTCEKWVDGIRQFKH 181
Query: 226 TILKDRKFCN--LPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTGHAVN 283
L D C LP++ LI+ GE+D + P + +H+ + +RL ++ H ++
Sbjct: 182 --LPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHV-KGSRLHLMPEGKHNLH 238
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 35/247 (14%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTP----RFNVYVPDLVFFGESYTTRADRTES-FQARCV 106
++LLHG G A + F R+ P + V + D +G+S + + S AR +
Sbjct: 39 VVLLHGSGPGAT-GWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSGSRSDLNARIL 97
Query: 107 MRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLF--- 163
+++ + ++ L+G S GG + ++P+ + K+VL G LF
Sbjct: 98 KSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTG------GMSLFTPM 151
Query: 164 PVTDIDEAANILVPQTPDKLRDLIR-FSFVNSKPVRGVPSCFLTDFIDVMCTEYVQEKRE 222
P I + T + L+ ++ F F S LTD + + +R+
Sbjct: 152 PTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSD---------LTDALFEARLNNMLSRRD 202
Query: 223 LIETILKD-----RKFCN----LPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLV 273
+E +K ++F + L +I QTLI+WG D+ P++ G RL I S L
Sbjct: 203 HLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIAGS-ELH 261
Query: 274 IIENTGH 280
I + GH
Sbjct: 262 IFRDCGH 268
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 52 LLLLHGFG----ANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQ----- 102
++L+HG G A A W+ + + + V PD+V FG + DR E++
Sbjct: 28 VILIHGSGPGVSAYANWRL--TIPALSKFYRVIAPDMVGFGFT-----DRPENYNYSKDS 80
Query: 103 -ARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEG 161
++ +M+ +++ +VG S+GG + + A ++ + ++++VL G D+ EG
Sbjct: 81 WVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLM--GAVGTRFDVTEG 138
Query: 162 LFPVTDIDEAANILVPQTP--DKLRDLIRF-----SFVNSKPVR-GVPSCFLTDFIDVMC 213
L N + TP + +R+L+ S V + R + F +
Sbjct: 139 L----------NAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFS 188
Query: 214 TEYVQEKRELIETILK-DRKFCNLPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARL 272
+ + + ++ I+ + D LP +TLII G +DQ+ PL RL I + A+L
Sbjct: 189 SMFPEPRQRWIDALASSDEDIKTLPN---ETLIIHGREDQVVPLSSSLRLGELI-DRAQL 244
Query: 273 VIIENTGH 280
+ GH
Sbjct: 245 HVFGRCGH 252
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 38/222 (17%)
Query: 77 FNVYVPDLVFFGESYTTRADRTESF-QARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAA 135
+ V + D F +S D AR V LM+ + R LVG S GG + A
Sbjct: 64 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFAL 123
Query: 136 QFPKVLEKVVLCCSGVCLEENDMEEGLFPVTDIDEAANILVPQTPDKLRDLIR-FSFVNS 194
++P + K++L G GL P ++ P + ++ L + ++ +
Sbjct: 124 EYPDRIGKLILMGPG----------GLGP--------SMFAPMPMEGIKLLFKLYAEPSY 165
Query: 195 KPVRGVPSCFLTDFIDVMCTEYVQEKRELIETILKDRK----------------FCNLPK 238
+ ++ + FL D ++ E +Q + E I+ + K L +
Sbjct: 166 ETLKQMLQVFLYD-QSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE 224
Query: 239 IAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTGH 280
I +T I WG D+ PL+ G +L +I + ARL + GH
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGH 265
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 52 LLLLHGFG----ANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQ----- 102
++L+HG G A A W+ + + + V PD+V FG + DR E++
Sbjct: 28 VILIHGSGPGVSAYANWRL--TIPALSKFYRVIAPDMVGFGFT-----DRPENYNYSKDS 80
Query: 103 -ARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEG 161
++ +M+ +++ +VG ++GG + + A ++ + ++++VL G D+ EG
Sbjct: 81 WVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLM--GAAGTRFDVTEG 138
Query: 162 LFPVTDIDEAANILVPQTP--DKLRDLIRF-----SFVNSKPVR-GVPSCFLTDFIDVMC 213
L N + TP + +R+L+ S V + R + F +
Sbjct: 139 L----------NAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFS 188
Query: 214 TEYVQEKRELIETILK-DRKFCNLPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARL 272
+ + + ++ I+ + D LP +TLII G +DQ+ PL RL I + A+L
Sbjct: 189 SMFPEPRQRWIDALASSDEDIKTLPN---ETLIIHGREDQVVPLSSSLRLGELI-DRAQL 244
Query: 273 VIIENTGH 280
+ GH
Sbjct: 245 HVFGRCGH 252
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 38/222 (17%)
Query: 77 FNVYVPDLVFFGESYTTRADRTESF-QARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAA 135
+ V + D F +S D AR V LM+ + R LVG + GG + A
Sbjct: 61 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFAL 120
Query: 136 QFPKVLEKVVLCCSGVCLEENDMEEGLFPVTDIDEAANILVPQTPDKLRDLIR-FSFVNS 194
++P + K++L G GL P ++ P + ++ L + ++ +
Sbjct: 121 EYPDRIGKLILMGPG----------GLGP--------SMFAPMPMEGIKLLFKLYAEPSY 162
Query: 195 KPVRGVPSCFLTDFIDVMCTEYVQEKRELIETILKDRK----------------FCNLPK 238
+ ++ + FL D ++ E +Q + E I+ + K L +
Sbjct: 163 ETLKQMLQVFLYD-QSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE 221
Query: 239 IAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTGH 280
I +T I WG D+ PL+ G +L +I + ARL + GH
Sbjct: 222 IKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGH 262
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 38/222 (17%)
Query: 77 FNVYVPDLVFFGESYTTRADRTESF-QARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAA 135
+ V + D F +S D AR V LM+ + R LVG + GG + A
Sbjct: 64 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFAL 123
Query: 136 QFPKVLEKVVLCCSGVCLEENDMEEGLFPVTDIDEAANILVPQTPDKLRDLIR-FSFVNS 194
++P + K++L G GL P ++ P + ++ L + ++ +
Sbjct: 124 EYPDRIGKLILMGPG----------GLGP--------SMFAPMPMEGIKLLFKLYAEPSY 165
Query: 195 KPVRGVPSCFLTDFIDVMCTEYVQEKRELIETILKDRK----------------FCNLPK 238
+ ++ + FL D ++ E +Q + E I+ + K L +
Sbjct: 166 ETLKQMLQVFLYD-QSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE 224
Query: 239 IAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTGH 280
I +T I WG D+ PL+ G +L +I + ARL + GH
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGH 265
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 38/222 (17%)
Query: 77 FNVYVPDLVFFGESYTTRADRTESF-QARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAA 135
+ V + D F +S D AR V LM+ + R LVG S GG + A
Sbjct: 64 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFAL 123
Query: 136 QFPKVLEKVVLCCSGVCLEENDMEEGLFPVTDIDEAANILVPQTPDKLRDLIR-FSFVNS 194
++P + K++L G GL P ++ P + ++ L + ++ +
Sbjct: 124 EYPDRIGKLILMGPG----------GLGP--------SMFAPMPMEGIKLLFKLYAEPSY 165
Query: 195 KPVRGVPSCFLTDFIDVMCTEYVQEKRELIETILKDRK----------------FCNLPK 238
+ ++ + FL D ++ E +Q + E I+ + K L +
Sbjct: 166 ETLKQMLQVFLYD-QSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE 224
Query: 239 IAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTGH 280
I +T I WG D+ PL+ G +L +I + ARL + G
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGQ 265
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 89/222 (40%), Gaps = 38/222 (17%)
Query: 77 FNVYVPDLVFFGESYTTRADRTESF-QARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAA 135
+ V + D F +S D AR V LM+ + R LVG + GG + A
Sbjct: 64 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFAL 123
Query: 136 QFPKVLEKVVLCCSGVCLEENDMEEGLFPVTDIDEAANILVPQTPDKLRDLIR-FSFVNS 194
++P + K++L G GL P ++ P + ++ L + ++ +
Sbjct: 124 EYPDRIGKLILMGPG----------GLGP--------SMFAPMPMEGIKLLFKLYAEPSY 165
Query: 195 KPVRGVPSCFLTDFIDVMCTEYVQEKRELIETILKDRK----------------FCNLPK 238
+ ++ + FL D ++ E +Q + E I+ + K L +
Sbjct: 166 ETLKQMLQVFLYD-QSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE 224
Query: 239 IAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTGH 280
I +T I WG D+ PL+ G +L +I + ARL + G
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGQ 265
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 38/221 (17%)
Query: 77 FNVYVPDLVFFGESYTTRADRTESF-QARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAA 135
+ V + D F +S D AR V LM+ + R LVG + GG + A
Sbjct: 64 YRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFAL 123
Query: 136 QFPKVLEKVVLCCSGVCLEENDMEEGLFPVTDIDEAANILVPQTPDKLRDLIR-FSFVNS 194
++P + K++L G GL P ++ P + ++ L + ++ +
Sbjct: 124 EYPDRIGKLILMGPG----------GLGP--------SMFAPMPMEGIKLLFKLYAEPSY 165
Query: 195 KPVRGVPSCFLTDFIDVMCTEYVQEKRELIETILKDRK----------------FCNLPK 238
+ ++ + FL D ++ E +Q + E I+ + K L +
Sbjct: 166 ETLKQMLQVFLYD-QSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGE 224
Query: 239 IAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTG 279
I +T I WG D+ PL+ G +L +I + ARL + G
Sbjct: 225 IKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCG 264
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 49/232 (21%)
Query: 52 LLLLHGFGANAMWQYGEFLRH---FTPRFNVYVPDLVFFGESYTTRADRTE--SFQARCV 106
++LLHG G A + F R+ F+V D +G S RA+ + + A +
Sbjct: 59 VVLLHGGGPGAA-SWTNFSRNIAVLARHFHVLAVDQPGYGHS-DKRAEHGQFNRYAAMAL 116
Query: 107 MRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLFPVT 166
L + + R+ LVG S GG A +P ++VL G GL
Sbjct: 117 KGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPG----------GL---- 162
Query: 167 DIDEAANILVPQTPDKLRDLIRFSFVNSKPVRGVPSCFLTDFI---DVMCTEYVQEK--- 220
+ N+ P + ++ L +FS P R FL + +++ E V ++
Sbjct: 163 ----SINLFAPDPTEGVKRLSKFSVA---PTRENLEAFLRVMVYDKNLITPELVDQRFAL 215
Query: 221 ----RELIETILKDRKFCN-----------LPKIAQQTLIIWGEQDQIFPLE 257
L T + F + ++ Q L+IWG +D++ PL+
Sbjct: 216 ASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLD 267
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 50 PNLLLLHGFG-ANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADR-----TESFQA 103
P LLLLHGF + MW RF V V DL +G S +D T+ A
Sbjct: 34 PPLLLLHGFPQTHVMWH--RVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 104 RCVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVL 146
+ ++ ME +L G + G V Y LA P L K+ +
Sbjct: 92 KQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAV 134
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 50 PNLLLLHGFG-ANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADR-----TESFQA 103
P LLLLHGF + MW RF V V DL +G S +D T+ A
Sbjct: 34 PPLLLLHGFPQTHVMWH--RVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 104 RCVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVL 146
+ ++ ME +L G G V Y LA P L K+ +
Sbjct: 92 KQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAV 134
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 50 PNLLLLHGFG-ANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADR-----TESFQA 103
P LLLLHGF + MW RF V V DL +G S +D T+ A
Sbjct: 34 PPLLLLHGFPQTHVMWH--RVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 104 RCVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVL 146
+ ++ ME +L G G V Y LA P L K+ +
Sbjct: 92 KQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAV 134
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 224 IETILKDRKFCNLPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTGHAV 282
+E++ D K KI Q+TL++WG +D + P+ L I S RL I+E +GH V
Sbjct: 136 VESLKGDXK-----KIRQKTLLVWGSKDHVVPIALSKEYASIISGS-RLEIVEGSGHPV 188
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 51 NLLLLHGFGANAM-WQYGEFLRHFTP-RFNVYVPDLVFFGESYTTRA---DRTESFQARC 105
++ L HG+ + W + +++ +NVY PD FG S ++ DR + A
Sbjct: 29 SIALFHGYSFTSXDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDRGDLKHAAE 88
Query: 106 VMR-LMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCC 148
+R ++ V R + G S GG Q+P +++ ++
Sbjct: 89 FIRDYLKANGVARSVIXGASXGGGXVIXTTLQYPDIVDGIIAVA 132
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 50 PNLLLLHGFG-ANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADR-----TESFQA 103
P LLLLHGF + MW RF V V DL +G S +D T+ A
Sbjct: 34 PPLLLLHGFPQTHVMWH--RVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMA 91
Query: 104 RCVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVL 146
+ ++ ME +L G G V Y LA P L K+ +
Sbjct: 92 KQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAV 134
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 49/232 (21%)
Query: 52 LLLLHGFGANAMWQYGEFLRH---FTPRFNVYVPDLVFFGESYTTRADRTE--SFQARCV 106
++LLHG G A + F R+ F+V D +G S RA+ + + A +
Sbjct: 39 VVLLHGGGPGAA-SWTNFSRNIAVLARHFHVLAVDQPGYGHS-DKRAEHGQFNRYAAMAL 96
Query: 107 MRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLFPVT 166
L + + R+ LVG + GG A +P ++VL G GL
Sbjct: 97 KGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPG----------GL---- 142
Query: 167 DIDEAANILVPQTPDKLRDLIRFSFVNSKPVRGVPSCFLTDFI---DVMCTEYVQEK--- 220
+ N+ P + ++ L +FS P R FL + +++ E V ++
Sbjct: 143 ----SINLFAPDPTEGVKRLSKFSVA---PTRENLEAFLRVMVYDKNLITPELVDQRFAL 195
Query: 221 ----RELIETILKDRKFCN-----------LPKIAQQTLIIWGEQDQIFPLE 257
L T + F + ++ Q L+IWG +D++ PL+
Sbjct: 196 ASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLD 247
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 51 NLLLLHGFGANA-MWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRL 109
+L+LLHG+G NA +W+ + + F +++ DL FG R+ F A + +
Sbjct: 15 HLVLLHGWGLNAEVWRCID--EELSSHFTLHLVDLPGFG--------RSRGFGALSLADM 64
Query: 110 MEVFCVK---RMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLFP 164
E + + +G + GG V +A P+ ++ +V S C D G+ P
Sbjct: 65 AEAVLQQAPDKAIWLGWALGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKP 122
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 51 NLLLLHGFGANA-MWQ--YGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVM 107
+L+LLHG+G NA +W+ E HFT +++ DL FG R+ F A +
Sbjct: 15 HLVLLHGWGLNAEVWRCIDEELSSHFT----LHLVDLPGFG--------RSRGFGALSLA 62
Query: 108 RLMEVFCVK---RMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLFP 164
E + + +G S GG V +A P+ + +V S C D G+ P
Sbjct: 63 DXAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKP 122
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 49 KPNLLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMR 108
KP L L + G + + L T F V D G S T + V+
Sbjct: 27 KPLLALSNSIGTT-LHXWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLE 85
Query: 109 LMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCL 153
L++ V+R +G+S GG VG LA P+ +E++VL + L
Sbjct: 86 LLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWL 130
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 91/208 (43%), Gaps = 14/208 (6%)
Query: 76 RFNVYVPDLVFFGESYTTRADRTESFQARCVMRLMEVFCVK-RMSLVGISYGGFVGYSLA 134
+ V D++ FG++ + T+ + R + ++ ++S+VG S GG G ++
Sbjct: 65 HYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVGNSMGGATGLGVS 124
Query: 135 AQFPKVLEKVVLCCSGVCLEENDMEEGLFPVTDIDEAANILVPQTPDKLRDLIRF--SFV 192
+++ +VL S + E + E L P+ + D +V D + + +
Sbjct: 125 VLHSELVNALVLMGSAGLVVE--IHEDLRPIINYDFTREGMVHLVKALTNDGFKIDDAMI 182
Query: 193 NSKPVRGVPSCFLTDFIDVMCTEYVQEKRELIETILKDRKFCNLPKIAQQTLIIWGEQDQ 252
NS+ ++ M ++++E+ L D +F K+ TL++ G+ D+
Sbjct: 183 NSRYTYATDEATRKAYVATM--QWIREQGGL----FYDPEFIR--KVQVPTLVVQGKDDK 234
Query: 253 IFPLELGHRLKRHIGESARLVIIENTGH 280
+ P+E ++ I +S II + GH
Sbjct: 235 VVPVETAYKFLDLIDDSWGY-IIPHCGH 261
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRF-----NVYVPDLVFFGES--YTTRADRTESFQAR 104
L LHG W Y R P F V PD FG+S D T F
Sbjct: 50 FLCLHG---EPTWSY--LYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRN 104
Query: 105 CVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLF 163
++ L+E ++ ++LV +GGF+G +L P +++++ CL + + + F
Sbjct: 105 FLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIM--NACLMTDPVTQPAF 161
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRF-----NVYVPDLVFFGES--YTTRADRTESFQAR 104
L LHG W Y R P F V PD FG+S D T F
Sbjct: 50 FLCLHG---EPTWSY--LYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRN 104
Query: 105 CVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLF 163
++ L+E ++ ++LV +GGF+G +L P +++++ CL + + + F
Sbjct: 105 FLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIM--NACLMTDPVTQPAF 161
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRF-----NVYVPDLVFFGES--YTTRADRTESFQAR 104
L LHG W Y R P F V PD FG+S D T F
Sbjct: 50 FLCLHG---EPTWSY--LYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRN 104
Query: 105 CVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLF 163
++ L+E ++ ++LV +GGF+G +L P +++++ CL + + + F
Sbjct: 105 FLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIM--NACLMTDPVTQPAF 161
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRF-----NVYVPDLVFFGES--YTTRADRTESFQAR 104
L LHG W Y R P F V PD FG+S D T F
Sbjct: 50 FLCLHG---EPTWSY--LYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRN 104
Query: 105 CVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLF 163
++ L+E ++ ++LV +GGF+G +L P +++++ CL + + + F
Sbjct: 105 FLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIM--NACLMTDPVTQPAF 161
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRF-----NVYVPDLVFFGES--YTTRADRTESFQAR 104
L LHG W Y R P F V PD FG+S D T F
Sbjct: 50 FLCLHG---EPTWSY--LYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRN 104
Query: 105 CVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLF 163
++ L+E ++ ++LV +GGF+G +L P +++++ CL + + + F
Sbjct: 105 FLLALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIM--NACLMTDPVTQPAF 161
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTT-RADRTESFQ--ARCVMR 108
LL++HG ++ + ++ V PDL G+S DR+ S + A +
Sbjct: 27 LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMTE 86
Query: 109 LMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEE 155
+M+ + + G S GG +G + A++P++ ++ V EE
Sbjct: 87 VMQQLGIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREE 133
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTT-RADRTESFQ--ARCVMR 108
LL++HG ++ + ++ V PDL G+S DR+ S + A +
Sbjct: 27 LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMTE 86
Query: 109 LMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEE 155
+M+ + + G S GG +G + A++P++ ++ V EE
Sbjct: 87 VMQQLGIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREE 133
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 106 VMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLC 147
V+ L + + R + G+S GG G +LAA+ +E+V LC
Sbjct: 82 VLGLXDTLKIARANFCGLSXGGLTGVALAARHADRIERVALC 123
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRF-----NVYVPDLVFFGES--YTTRADRTESFQAR 104
L LHG W Y R P F V PD FG+S D T F
Sbjct: 50 FLCLHG---EPTWSY--LYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRN 104
Query: 105 CVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLE 154
++ L+E ++ ++LV +GGF+G +L P +++++ + + +
Sbjct: 105 FLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTD 154
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 115 VKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLFPVT 166
V+ + LVG S GG V LA +P +++KVVL L+ + +E VT
Sbjct: 118 VRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVT 169
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 50 PNLLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQ----ARC 105
P LLLLHG+ W++ + + ++V VPDL FG+S + + A
Sbjct: 30 PTLLLLHGW-PGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSKYSLDKAADD 88
Query: 106 VMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVL 146
L++ +++ +VG + V + ++ + K +
Sbjct: 89 QAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAI 129
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTT-RADRTESFQ--ARCVMR 108
LL++HG ++ + ++ V PDL G+S DR+ S + A +
Sbjct: 27 LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMTE 86
Query: 109 LMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEE 155
+M+ + + G GG +G + A++P++ ++ V EE
Sbjct: 87 VMQQLGIADAVVFGWGLGGHIGIEMIARYPEMRGLMITGTPPVAREE 133
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 115 VKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLFPVT 166
V+ + LVG + GG V LA +P +++KVVL L+ + +E VT
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVT 169
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 115 VKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLFPVT 166
V+ + LVG + GG V LA +P +++KVVL L+ + +E VT
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVT 169
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 51/131 (38%), Gaps = 14/131 (10%)
Query: 23 GLRSTSTDLGDGTVMQCWVPKFPKILKPNLLLLHGFGAN-AMWQYGEFLRHFTPRFNVYV 81
G D+GD T+ C V P LLLLHGF N MW L + V
Sbjct: 4 GFERRLVDVGDVTI-NCVVGG----SGPALLLLHGFPQNLHMWARVAPL--LANEYTVVC 56
Query: 82 PDLVFFGESYT-----TRADRTESFQARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQ 136
DL +G S A+ + A LM +R LVG + GG G+ +A
Sbjct: 57 ADLRGYGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALD 116
Query: 137 FP-KVLEKVVL 146
P VL VL
Sbjct: 117 HPDSVLSLAVL 127
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 22/244 (9%)
Query: 49 KPNLLLLHGFGANA-MWQYGEFLRHFTPR-FNVYVPDLVFFGESYTTRADRTESFQARCV 106
KP +L HG+ +A MW+Y + + + R + D FG S A +
Sbjct: 20 KP-VLFSHGWPLDADMWEYQ--MEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDI 76
Query: 107 MRLMEVFCVKRMSLVGISYGGF-VGYSLAAQFPKVLEKVVLCCSGVCL--EENDMEEGLF 163
+L+E +K ++LVG S GG V +A + +VL + L ++ D +G+
Sbjct: 77 AQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGV- 135
Query: 164 PVTDIDEAANILVPQTPDKLRDLIRFSFVNSKPVRG------VPSCFLTDFIDVMCTEYV 217
P+ ++ + L+D +F + P G V T + + +
Sbjct: 136 PL-------DVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASL 188
Query: 218 QEKRELIETILKDRKFCNLPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIEN 277
+ + + + ++ KI TL+I G+ DQI P E ++ + + A L + ++
Sbjct: 189 KATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKD 248
Query: 278 TGHA 281
H
Sbjct: 249 APHG 252
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 50/131 (38%), Gaps = 14/131 (10%)
Query: 23 GLRSTSTDLGDGTVMQCWVPKFPKILKPNLLLLHGFGAN-AMWQYGEFLRHFTPRFNVYV 81
G D+GD T+ C V P LLLLHGF N MW L + V
Sbjct: 4 GFERRLVDVGDVTI-NCVVGG----SGPALLLLHGFPQNLHMWARVAPL--LANEYTVVC 56
Query: 82 PDLVFFGESYT-----TRADRTESFQARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQ 136
DL +G S A+ + A LM +R LVG GG G+ +A
Sbjct: 57 ADLRGYGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALD 116
Query: 137 FP-KVLEKVVL 146
P VL VL
Sbjct: 117 HPDSVLSLAVL 127
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 22/244 (9%)
Query: 49 KPNLLLLHGFGANA-MWQYGEFLRHFTPR-FNVYVPDLVFFGESYTTRADRTESFQARCV 106
KP +L HG+ +A MW+Y + + + R + D FG S A +
Sbjct: 20 KP-VLFSHGWPLDADMWEYQ--MEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDI 76
Query: 107 MRLMEVFCVKRMSLVGISYGGF-VGYSLAAQFPKVLEKVVL--CCSGVCLEENDMEEGLF 163
+L+E +K ++LVG S GG V +A + +VL + + ++ D +G+
Sbjct: 77 AQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPIFGQKPDYPQGV- 135
Query: 164 PVTDIDEAANILVPQTPDKLRDLIRFSFVNSKPVRG------VPSCFLTDFIDVMCTEYV 217
P+ ++ + L+D +F + P G V T + + +
Sbjct: 136 PL-------DVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASL 188
Query: 218 QEKRELIETILKDRKFCNLPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIEN 277
+ + + + ++ KI TL+I G+ DQI P E ++ + + A L + ++
Sbjct: 189 KATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKD 248
Query: 278 TGHA 281
H
Sbjct: 249 APHG 252
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 79/214 (36%), Gaps = 34/214 (15%)
Query: 83 DLVFFGESYTTRADRTESFQARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLE 142
DL G S +++ + + E+ +R L G SYGG++ ++A
Sbjct: 56 DLPGXGNSDPISPSTSDNVLETLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQTL 115
Query: 143 KVVLCCSGVCLEE---------NDMEEGLFPVTDIDEAANILVPQTPDKLRDLIRFSFVN 193
V L C + + N +EE + PV + + A+ L +N
Sbjct: 116 GVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSXNV-----------IIN 164
Query: 194 SKPVRGVPSCFLTDFIDVMCTEYVQEKRELIETILKDRKFCNLPKIAQQTL-----IIWG 248
++ D+ +++ +E + I+ + + F K+ I G
Sbjct: 165 NQAWH--------DYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIXVG 216
Query: 249 EQDQIFPLELGHRLKRHIGESARLVIIENTGHAV 282
DQ+ + +L H E+ +V++ TGH +
Sbjct: 217 RNDQVVGYQEQLKLINH-NENGEIVLLNRTGHNL 249
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 22/244 (9%)
Query: 49 KPNLLLLHGFGANA-MWQYGEFLRHFTPR-FNVYVPDLVFFGESYTTRADRTESFQARCV 106
KP +L HG+ +A MW+Y + + + R + D FG S A +
Sbjct: 20 KP-VLFSHGWLLDADMWEYQ--MEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDI 76
Query: 107 MRLMEVFCVKRMSLVGISYGGF-VGYSLAAQFPKVLEKVVLCCSGVCL--EENDMEEGLF 163
+L+E +K ++LVG S GG V +A + +VL + L ++ D +G+
Sbjct: 77 AQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGV- 135
Query: 164 PVTDIDEAANILVPQTPDKLRDLIRFSFVNSKPVRG------VPSCFLTDFIDVMCTEYV 217
P+ ++ + L+D +F + P G V T + + +
Sbjct: 136 PL-------DVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASL 188
Query: 218 QEKRELIETILKDRKFCNLPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIEN 277
+ + + + ++ KI TL+I G+ DQI P E ++ + + A L + ++
Sbjct: 189 KATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKD 248
Query: 278 TGHA 281
H
Sbjct: 249 APHG 252
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 22/244 (9%)
Query: 49 KPNLLLLHGFGANA-MWQYGEFLRHFTPR-FNVYVPDLVFFGESYTTRADRTESFQARCV 106
KP +L HG+ +A MW+Y + + + R + D FG S A +
Sbjct: 20 KP-VLFSHGWILDADMWEYQ--MEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDI 76
Query: 107 MRLMEVFCVKRMSLVGISYGGF-VGYSLAAQFPKVLEKVVLCCSGVCL--EENDMEEGLF 163
+L+E +K ++LVG S GG V +A + +VL + L ++ D +G+
Sbjct: 77 AQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGV- 135
Query: 164 PVTDIDEAANILVPQTPDKLRDLIRFSFVNSKPVRG------VPSCFLTDFIDVMCTEYV 217
P+ ++ + L+D +F + P G V T + + +
Sbjct: 136 PL-------DVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASL 188
Query: 218 QEKRELIETILKDRKFCNLPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIEN 277
+ + + + ++ KI TL+I G+ DQI P E ++ + + A L + ++
Sbjct: 189 KATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKD 248
Query: 278 TGHA 281
H
Sbjct: 249 APHG 252
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 79/214 (36%), Gaps = 34/214 (15%)
Query: 83 DLVFFGESYTTRADRTESFQARCVMRLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLE 142
DL G S +++ + + E+ +R L G SYGG++ ++A
Sbjct: 56 DLPGXGNSDPISPSTSDNVLETLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQTL 115
Query: 143 KVVLCCSGVCLEE---------NDMEEGLFPVTDIDEAANILVPQTPDKLRDLIRFSFVN 193
V L C + + N +EE + PV + + A+ L +N
Sbjct: 116 GVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSXNV-----------IIN 164
Query: 194 SKPVRGVPSCFLTDFIDVMCTEYVQEKRELIETILKDRKFCNLPKIAQQTL-----IIWG 248
++ D+ +++ +E + I+ + + F K+ I G
Sbjct: 165 NQAWH--------DYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIXVG 216
Query: 249 EQDQIFPLELGHRLKRHIGESARLVIIENTGHAV 282
DQ+ + +L H E+ +V++ TGH +
Sbjct: 217 RNDQVVGYQEQLKLINH-NENGEIVLLNRTGHNL 249
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 22/244 (9%)
Query: 49 KPNLLLLHGFGANA-MWQYGEFLRHFTPR-FNVYVPDLVFFGESYTTRADRTESFQARCV 106
KP +L HG+ +A MW+Y + + + R + D FG S A +
Sbjct: 20 KP-VLFSHGWLLDADMWEYQ--MEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDI 76
Query: 107 MRLMEVFCVKRMSLVGISYGGF-VGYSLAAQFPKVLEKVVLCCSGVCL--EENDMEEGLF 163
+L+E +K ++LVG S GG V +A + +VL + L ++ D +G+
Sbjct: 77 AQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGV- 135
Query: 164 PVTDIDEAANILVPQTPDKLRDLIRFSFVNSKPVRG------VPSCFLTDFIDVMCTEYV 217
P+ ++ + L+D +F + P G V T + + +
Sbjct: 136 PL-------DVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASL 188
Query: 218 QEKRELIETILKDRKFCNLPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIEN 277
+ + + + ++ KI TL+I G+ DQI P E ++ + + A L + ++
Sbjct: 189 KATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKD 248
Query: 278 TGHA 281
H
Sbjct: 249 APHG 252
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRLME 111
+L LHG + + + + H P PDL+ G+S D R + +E
Sbjct: 35 VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIE 93
Query: 112 VFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVV 145
++ + LV +G +G+ A + P+ ++ +
Sbjct: 94 ALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRLME 111
+L LHG + + + + H P PDL+ G+S D R + +E
Sbjct: 32 VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIE 90
Query: 112 VFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVV 145
++ + LV +G +G+ A + P+ ++ +
Sbjct: 91 ALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 124
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 77 FNVYVPDLVFFGESYTTRADRTESFQ--ARCVMRLMEVFCVKRMSLVGISYGGFVGYSLA 134
+ V D V F +S + A SFQ A L+E V R S++G S GG + A
Sbjct: 74 YRVIAVDQVGFCKS-SKPAHYQYSFQQLAANTHALLERLGVARASVIGHSXGGXLATRYA 132
Query: 135 AQFPKVLEKVVLC 147
+P+ +E++VL
Sbjct: 133 LLYPRQVERLVLV 145
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRLME 111
+L LHG + + + + H P PDL+ G+S D R + +E
Sbjct: 35 VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIE 93
Query: 112 VFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVV 145
++ + LV +G +G+ A + P+ ++ +
Sbjct: 94 ALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRLME 111
+L LHG + + + + H P PDL+ G+S D R + +E
Sbjct: 35 VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIE 93
Query: 112 VFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVV 145
++ + LV +G +G+ A + P+ ++ +
Sbjct: 94 ALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRLME 111
+L LHG + + + + H P PDL+ G+S D R + +E
Sbjct: 35 VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIE 93
Query: 112 VFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVV 145
++ + LV +G +G+ A + P+ ++ +
Sbjct: 94 ALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRLME 111
+L LHG + + + + H P PDL+ G+S D R + +E
Sbjct: 35 VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIE 93
Query: 112 VFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVV 145
++ + LV +G +G+ A + P+ ++ +
Sbjct: 94 ALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRLME 111
+L LHG + + + + H P PDL+ G+S D R + +E
Sbjct: 35 VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIE 93
Query: 112 VFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVV 145
++ + LV +G +G+ A + P+ ++ +
Sbjct: 94 ALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRLME 111
+L LHG + + + + H P PDL+ G+S D R + +E
Sbjct: 32 VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIE 90
Query: 112 VFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVV 145
++ + LV +G +G+ A + P+ ++ +
Sbjct: 91 ALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 124
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRLME 111
+L LHG + + + + H P PDL+ G+S D R + +E
Sbjct: 35 VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIE 93
Query: 112 VFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVV 145
++ + LV +G +G+ A + P+ ++ +
Sbjct: 94 ALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRLME 111
+L LHG + + + + H P PDL+ G+S D R + +E
Sbjct: 35 VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIE 93
Query: 112 VFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVV 145
++ + LV +G +G+ A + P+ ++ +
Sbjct: 94 ALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 235 NLPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTGHAV 282
+L K TL++ G+ DQ+ P++ R I +A L + E + H +
Sbjct: 207 DLKKFDIPTLVVHGDDDQVVPIDATGRKSAQIIPNAELKVYEGSSHGI 254
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 50 PNLLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVM-- 107
P +L +HG + L + V PDL FG ++ + S+ + +
Sbjct: 27 PVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDL--FGHGRSSHLEMVTSYSSLTFLAQ 84
Query: 108 --RLMEVFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVVLCCSGVCLEENDMEEGLFPV 165
R+++ + + LVG S G + ++A+ PK +++++L + EE+ E + +
Sbjct: 85 IDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQL 144
Query: 166 T 166
T
Sbjct: 145 T 145
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 52 LLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRLME 111
+L LHG + + + + H P PDL+ G+S D R + +E
Sbjct: 35 VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDYFFDDHVRYLDAFIE 93
Query: 112 VFCVKRMSLVGISYGGFVGYSLAAQFPKVLEKVV 145
++ + LV +G +G+ A + P+ ++ +
Sbjct: 94 AVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 50 PNLLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRL 109
P ++L+HGFG +++ + + RF V PDL G+S + + A + +L
Sbjct: 31 PLVMLVHGFG-QTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKL 89
Query: 110 MEVFCVKR 117
F R
Sbjct: 90 ARQFSPDR 97
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 50 PNLLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRL 109
P ++L+HGFG +++ + + RF V PDL G+S + + A + +L
Sbjct: 31 PLVMLVHGFG-QTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKL 89
Query: 110 MEVFCVKR 117
F R
Sbjct: 90 ARQFSPDR 97
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 50 PNLLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESFQARCVMRL 109
P ++L+HGFG +++ + + RF V PDL G+S + + A + +L
Sbjct: 31 PLVMLVHGFG-QTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKL 89
Query: 110 MEVFCVKR 117
F R
Sbjct: 90 ARQFSPDR 97
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 229 KDRKFCNLPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTGHAVN 283
KD + N+P TLII G+ D P E +L ++++ +I+ H +N
Sbjct: 215 KDLEKFNIP-----TLIIHGDSDATVPFEYSGKLTHEAIPNSKVALIKGGPHGLN 264
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 233 FCNLPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLVIIENTGH 280
F +L ++A LI+ G+QD++ P E I V++ H
Sbjct: 143 FASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASH 190
>pdb|1C8U|A Chain A, Crystal Structure Of The E.Coli Thioesterase Ii, A
Homologue Of The Human Nef-Binding Enzyme
pdb|1C8U|B Chain B, Crystal Structure Of The E.Coli Thioesterase Ii, A
Homologue Of The Human Nef-Binding Enzyme
Length = 285
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 214 TEYVQEKRELIETILKDRKFCNLPKIAQQTLIIWGEQDQIFPLELGHRLKRHIGESARLV 273
T+ Q L+ +LKD+ C+ P ++ P+E + LK H+ E R V
Sbjct: 133 TQIAQSLAHLLPPVLKDKFICDRPL-------------EVRPVEFHNPLKGHVAEPHRQV 179
Query: 274 IIENTG 279
I G
Sbjct: 180 WIRANG 185
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 42 PKFPKILKPNLLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESF 101
PK P++L N + G + AMW G+ + + VP L + G T +
Sbjct: 154 PKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQ 213
Query: 102 QARCVMRLMEVF---CVKRMSLVGISYGGFVGYSL 133
Q + + +V+ CVK + G+ +G+ L
Sbjct: 214 QGKRISVPEDVYDKGCVKDVD-EGLEAAERIGFPL 247
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 42 PKFPKILKPNLLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESF 101
PK P++L N + G + AMW G+ + + VP L + G T +
Sbjct: 154 PKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQ 213
Query: 102 QARCVMRLMEVF---CVKRMSLVGISYGGFVGYSL 133
Q + + +V+ CVK + G+ +G+ L
Sbjct: 214 QGKRISVPEDVYDKGCVKDVD-EGLEAAERIGFPL 247
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 42 PKFPKILKPNLLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESF 101
PK P++L N + G + AMW G+ + + VP L + G T +
Sbjct: 148 PKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQ 207
Query: 102 QARCVMRLMEVF---CVKRMSLVGISYGGFVGYSL 133
Q + + +V+ CVK + G+ +G+ L
Sbjct: 208 QGKRISVPEDVYDKGCVKDVD-EGLEAAERIGFPL 241
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 42 PKFPKILKPNLLLLHGFGANAMWQYGEFLRHFTPRFNVYVPDLVFFGESYTTRADRTESF 101
PK P++L N + G + AMW G+ + + VP L + G T +
Sbjct: 138 PKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQ 197
Query: 102 QARCVMRLMEVF---CVKRMSLVGISYGGFVGYSL 133
Q + + +V+ CVK + G+ +G+ L
Sbjct: 198 QGKRISVPEDVYDKGCVKDVD-EGLEAAERIGFPL 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,511,463
Number of Sequences: 62578
Number of extensions: 349622
Number of successful extensions: 967
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 85
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)