BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042556
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P3X|A Chain A, Crystal Structure Of Grenache (Vitis Vinifera) Polyphenol
Oxidase
Length = 339
Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/340 (62%), Positives = 254/340 (74%), Gaps = 8/340 (2%)
Query: 89 APVSAPDISKCGKA----DTTTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAYIA 144
AP+ APDISKCG A T NCCPP +T II+F+LP S S +R RPAAHL Y+A
Sbjct: 1 APIQAPDISKCGTATVPDGVTPTNCCPPVTTKIIDFQLPSSGSPMRTRPAAHLVSKEYLA 60
Query: 145 KYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHRYY 204
KY KAIEL KALP DDPRSF QANVHC YC GAYDQVG+ +L+LQ+H SWLF PFHRYY
Sbjct: 61 KYKKAIELQKALPDDDPRSFKQQANVHCTYCQGAYDQVGYTDLELQVHASWLFLPFHRYY 120
Query: 205 LYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLLDL 264
LYF E+IL KLIDDPTFALP+W WD+P GM MP ++A+ S LYD+ RNA H PPT++DL
Sbjct: 121 LYFNERILAKLIDDPTFALPYWAWDNPDGMYMPTIYASSPSSLYDEKRNAKHLPPTVIDL 180
Query: 265 DYNEXXXXXXXXXXXXISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIENAP 324
DY+ + NL IMY+Q+VS T KLFLG PYRAGD +PG+G++E+AP
Sbjct: 181 DYDGTEPTIPDDELK--TDNLAIMYKQIVSGATTPKLFLGYPYRAGDAIDPGAGTLEHAP 238
Query: 325 HNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGK-RTNFTEPD 383
HN VH W G +P+ E+MGNFY+AGRDPIFF HH+N+DRMW IW+T+GGK R +FT+ D
Sbjct: 239 HNIVHKWTGLADKPS-EDMGNFYTAGRDPIFFGHHANVDRMWNIWKTIGGKNRKDFTDTD 297
Query: 384 WLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPW 423
WLD+ F+FYDEN LV+VKV DC+DT L Y YQD+ IPW
Sbjct: 298 WLDATFVFYDENKQLVKVKVSDCVDTSKLRYQYQDIPIPW 337
>pdb|1BT1|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
The Native Cu(Ii)-Cu(Ii) State
pdb|1BT1|B Chain B, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
The Native Cu(Ii)-Cu(Ii) State
pdb|1BT2|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
The Reduced Cu(I)-Cu(I) State
pdb|1BT2|B Chain B, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
The Reduced Cu(I)-Cu(I) State
pdb|1BT3|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
The Native Cu(Ii)-Cu(Ii) State
pdb|1BUG|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)-
Inhibitor Complex With Phenylthiourea (Ptu)
pdb|1BUG|B Chain B, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)-
Inhibitor Complex With Phenylthiourea (Ptu)
Length = 345
Score = 420 bits (1079), Expect = e-117, Method: Compositional matrix adjust.
Identities = 196/348 (56%), Positives = 252/348 (72%), Gaps = 11/348 (3%)
Query: 89 APVSAPDISKC--GKAD----TTTDNCCPPKSTNIINFKLPPSNSSLRVRPAAHLSDDAY 142
AP+ AP+ISKC AD DNCCPP ++NI+++KLP + ++++VRPAAH D
Sbjct: 1 APIQAPEISKCVVPPADLPPGAVVDNCCPPVASNIVDYKLP-AVTTMKVRPAAHTMDKDA 59
Query: 143 IAKYSKAIELMKALPADDPRSFMNQANVHCAYCDGAYDQVGFPNLDLQIHNSWLFFPFHR 202
IAK++KA+ELMKALPADDPR+F QA VHCAYC+G YDQV FP+ ++Q+HNSWLFFPFHR
Sbjct: 60 IAKFAKAVELMKALPADDPRNFYQQALVHCAYCNGGYDQVNFPDQEIQVHNSWLFFPFHR 119
Query: 203 YYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMPPMFANPNSPLYDKLRNANHQPPTLL 262
+YLYFYE+ILGKLI DP+F LPFWNWD+P GM +P + S LYD RN +H PP ++
Sbjct: 120 WYLYFYERILGKLIGDPSFGLPFWNWDNPGGMVLPDFLNDSTSSLYDSNRNQSHLPPVVV 179
Query: 263 DLDYNEXXXXXXXXXXXXISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIEN 322
DL YN I+ NL +MY+QMV+N T++LFLG YRAGD P PG+GSIE
Sbjct: 180 DLGYN--GADTDVTDQQRITDNLALMYKQMVTNAGTAELFLGKAYRAGDAPSPGAGSIET 237
Query: 323 APHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGK--RTNFT 380
+PH P+H W GD N E+MGNFYSAGRD F+ HHSN+DRMWTIW+ L GK + ++T
Sbjct: 238 SPHIPIHRWVGDPRNTNNEDMGNFYSAGRDIAFYCHHSNVDRMWTIWQQLAGKPRKRDYT 297
Query: 381 EPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEIPWQNSKP 428
+ DWL++ FLFYDEN V+V++ D LD + +GY Y +PW +SKP
Sbjct: 298 DSDWLNATFLFYDENGQAVKVRIGDSLDNQKMGYKYAKTPLPWLDSKP 345
>pdb|4HD4|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218f Mutant
pdb|4HD4|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218f Mutant
pdb|4HD6|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218f Mutant Soaked In Cuso4
pdb|4HD6|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218f Mutant Soaked In Cuso4
Length = 303
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 32/108 (29%)
Query: 325 HNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTL-----------G 373
HN VH W G MG F +A DP+FF HH+N+DR+W +W+ + G
Sbjct: 204 HNRVHRWVGGQ-------MGVFPTAPNDPVFFLHHANVDRIWAVWQIIHRNQNYQPMKNG 256
Query: 374 GKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEI 421
NF +P Y N D ++ + LGYVY D+E+
Sbjct: 257 PFGQNFRDP--------MYPWNTT-----PEDVMNHRKLGYVY-DIEL 290
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 192 HNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMP 237
H S F P+HR YL +E+ L + +P LP+W W++ MQ P
Sbjct: 60 HMSSAFLPWHREYLLRFERDLQSI--NPEVTLPYWEWETDAQMQDP 103
>pdb|3NM8|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
pdb|3NM8|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
pdb|3NPY|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Soaked In Cuso4
pdb|3NPY|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Soaked In Cuso4
pdb|3NQ0|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Crystallized In The Absence Of Zinc
pdb|3NQ0|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Crystallized In The Absence Of Zinc
pdb|3NQ1|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
In Complex With Inhibitor Kojic Acid
pdb|3NQ1|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
In Complex With Inhibitor Kojic Acid
pdb|3NTM|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Crystallized In The Absence Of Zinc, Partial Occupancy
Of Cub
pdb|3NTM|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Crystallized In The Absence Of Zinc, Partial Occupancy
Of Cub
pdb|4D87|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
In Complex With Sds
pdb|4D87|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
In Complex With Sds
Length = 303
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 32/108 (29%)
Query: 325 HNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTL-----------G 373
HN VH W G MG +A DP+FF HH+N+DR+W +W+ + G
Sbjct: 204 HNRVHRWVGGQ-------MGVVPTAPNDPVFFLHHANVDRIWAVWQIIHRNQNYQPMKNG 256
Query: 374 GKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEI 421
NF +P Y N D ++ + LGYVY D+E+
Sbjct: 257 PFGQNFRDP--------MYPWNTT-----PEDVMNHRKLGYVY-DIEL 290
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 192 HNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMP 237
H S F P+HR YL +E+ L + +P LP+W W++ MQ P
Sbjct: 60 HMSSAFLPWHREYLLRFERDLQSI--NPEVTLPYWEWETDAQMQDP 103
>pdb|3NQ5|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
R209h Mutant
pdb|3NQ5|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
R209h Mutant
Length = 303
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 32/108 (29%)
Query: 325 HNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTL-----------G 373
HN VH W G MG +A DP+FF HH+N+DR+W +W+ + G
Sbjct: 204 HNRVHHWVGGQ-------MGVVPTAPNDPVFFLHHANVDRIWAVWQIIHRNQNYQPMKNG 256
Query: 374 GKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEI 421
NF +P Y N D ++ + LGYVY D+E+
Sbjct: 257 PFGQNFRDP--------MYPWNTT-----PEDVMNHRKLGYVY-DIEL 290
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 192 HNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMP 237
H S F P+HR YL +E+ L + +P LP+W W++ MQ P
Sbjct: 60 HMSSAFLPWHREYLLRFERDLQSI--NPEVTLPYWEWETDAQMQDP 103
>pdb|4HD7|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218g Mutant Soaked In Cuso4
pdb|4HD7|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218g Mutant Soaked In Cuso4
Length = 303
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 32/108 (29%)
Query: 325 HNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTL-----------G 373
HN VH W G MG +A DP+FF HH+N+DR+W +W+ + G
Sbjct: 204 HNRVHRWVGGQ-------MGVGPTAPNDPVFFLHHANVDRIWAVWQIIHRNQNYQPMKNG 256
Query: 374 GKRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLGYVYQDVEI 421
NF +P Y N D ++ + LGYVY D+E+
Sbjct: 257 PFGQNFRDP--------MYPWNTT-----PEDVMNHRKLGYVY-DIEL 290
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 192 HNSWLFFPFHRYYLYFYEKILGKLIDDPTFALPFWNWDSPPGMQMP 237
H S F P+HR YL +E+ L + +P LP+W W++ MQ P
Sbjct: 60 HMSSAFLPWHREYLLRFERDLQSI--NPEVTLPYWEWETDAQMQDP 103
>pdb|1LNL|A Chain A, Structure Of Deoxygenated Hemocyanin From Rapana
Thomasiana
pdb|1LNL|B Chain B, Structure Of Deoxygenated Hemocyanin From Rapana
Thomasiana
pdb|1LNL|C Chain C, Structure Of Deoxygenated Hemocyanin From Rapana
Thomasiana
Length = 408
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 325 HNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGKR 376
HN +H W G + +MG+ + A DP+F HHSN DR++ +W+ L R
Sbjct: 184 HNAIHAWVGGTEE---YSMGHLHYASYDPVFILHHSNTDRLFALWQELQKFR 232
>pdb|1JS8|A Chain A, Structure Of A Functional Unit From Octopus Hemocyanin
pdb|1JS8|B Chain B, Structure Of A Functional Unit From Octopus Hemocyanin
Length = 394
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 325 HNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGKR 376
HN +H W G ++ M + DP+F+ HHSN DR+W++W+ L R
Sbjct: 169 HNAIHSWVGGSSP---YGMSTLHYTSYDPLFYLHHSNTDRIWSVWQALQKYR 217
>pdb|3L6W|A Chain A, Structure Of The Collar Functional Unit (Klh1-H) Of
Keyhole Limpet Hemocyanin
pdb|3L6W|B Chain B, Structure Of The Collar Functional Unit (Klh1-H) Of
Keyhole Limpet Hemocyanin
pdb|3QJO|A Chain A, Refined Structure Of The Functional Unit (Klh1-H) Of
Keyhole Limpet Hemocyanin
pdb|3QJO|B Chain B, Refined Structure Of The Functional Unit (Klh1-H) Of
Keyhole Limpet Hemocyanin
Length = 491
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 45/217 (20%)
Query: 177 GAYDQV----GFPNLDLQ---------IHNSWLFFPFHRYYLYFYEKILGKLIDDPTFAL 223
G Y+ + G+PNL + +H +F +HR + +E+ L K +
Sbjct: 32 GGYEHIAGFHGYPNLCPEKGDEKYPCCVHGMSIFPHWHRLHTIQFERALKK--HGSHLGI 89
Query: 224 PFWNWDSPPGMQMPPMFANP--NSPLYD-KLRNANHQPPTLLDLDYNEXXXXXXXXXXXX 280
P+W+W +P FA+ N+P + +R+ N D NE
Sbjct: 90 PYWDWTQTIS-SLPTFFADSGNNNPFFKYHIRSINQDTVR----DVNEAIF--------- 135
Query: 281 ISSNLTIMYRQMVSNGKTSKLFLGSPYRAGDDPEPGSGSIENAPHNPVHLWCGDNTQPNL 340
Q G+ S +F + +D HN VH G + ++
Sbjct: 136 ----------QQTKFGEFSSIFYLALQALEEDNYCDFEVQYEILHNEVHALIGGAEKYSM 185
Query: 341 ENMGNFYSAGRDPIFFAHHSNIDRMWTIWRTLGGKRT 377
+ YSA DP F HH+++D++W IW+ L +R
Sbjct: 186 STLE--YSA-FDPYFMIHHASLDKIWIIWQELQKRRV 219
>pdb|2Y9W|A Chain A, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit
pdb|2Y9W|B Chain B, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit
pdb|2Y9X|A Chain A, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
pdb|2Y9X|B Chain B, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
pdb|2Y9X|C Chain C, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
pdb|2Y9X|D Chain D, Crystal Structure Of Ppo3, A Tyrosinase From Agaricus
Bisporus, In Deoxy-Form That Contains Additional Unknown
Lectin-Like Subunit, With Inhibitor Tropolone
Length = 391
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 325 HNPVHLWCGDNTQPNLE-----NMGNFYSAGRDPIFFAHHSNIDRMWTIWRTL 372
HN VH G + P L+ +MG+ A DPIF+ HH N+DR+ +W+T+
Sbjct: 258 HNTVHFLIGRD--PTLDPLVPGHMGSVPHAAFDPIFWMHHCNVDRLLALWQTM 308
>pdb|1WX2|A Chain A, Crystal Structure Of The Oxy-Form Of The Copper-Bound
Streptomyces Castaneoglobisporus Tyrosinase Complexed
With A Caddie Protein Prepared By The Addition Of
Hydrogenperoxide
pdb|1WX4|A Chain A, Crystal Structure Of The Oxy-Form Of The Copper-Bound
Streptomyces Castaneoglobisporus Tyrosinase Complexed
With A Caddie Protein Prepared By The Addition Of
Dithiothreitol
pdb|1WX5|A Chain A, Crystal Structure Of The Copper-Free Streptomyces
Castaneoglobisporus Tyrosinase Complexed With A Caddie
Protein In The Monoclinic Crystal
pdb|1WX5|C Chain C, Crystal Structure Of The Copper-Free Streptomyces
Castaneoglobisporus Tyrosinase Complexed With A Caddie
Protein In The Monoclinic Crystal
pdb|1WXC|A Chain A, Crystal Structure Of The Copper-Free Streptomyces
Castaneoglobisporus Tyrosinase Complexed With A Caddie
Protein
pdb|2AHK|A Chain A, Crystal Structure Of The Met-Form Of The Copper-Bound
Streptomyces Castaneoglobisporus Tyrosinase In Complex
With A Caddie Protein Obtained By Soking In Cupric
Sulfate For 6 Months
pdb|2AHL|A Chain A, Crystal Structure Of The Hydroxylamine-Induced Deoxy-Form
Of The Copper-Bound Streptomyces Castaneoglobisporus
Tyrosinase In Complex With A Caddie Protein
pdb|2ZMX|A Chain A, Crystal Structure Of The Met1-Form Of The Copper-Bound
Tyrosinase In Complex With A Caddie Protein From
Streptomyces Castaneoglobisporus Obtained By Soaking In
Cupric Sulfate Solution For 36 Hours
pdb|2ZMY|A Chain A, Crystal Structure Of The Met2-Form Of The Copper-Bound
Tyrosinase In Complex With A Caddie Protein From
Streptomyces Castaneoglobisporus Obtained By Soaking In
Cupric Sulfate Solution For 80 Hours
pdb|2ZMZ|A Chain A, The 1.37-A Crystal Structure Of The Hydroxylamine-Induced
Deoxy-Form Of The Copper-Bound Tyrosinase In Complex
With A Caddie Protein From Streptomyces
Castaneoglobisporus
pdb|2ZWD|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen- Saturated Solution For 5 Minutes
pdb|2ZWE|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen-Saturated Solution For 40 Minutes
pdb|2ZWF|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen-Saturated Solution For 80 Minutes
pdb|2ZWG|A Chain A, Crystal Structure Of The Copper-Bound Tyrosinase In
Complex With A Caddie Protein From Streptomyces
Castaneoglobisporus Obtained By Soaking The Deoxy-Form
Crystal In Dioxygen-Saturated Solution For 12 Hours
pdb|3AWS|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
20 Hr: Occupancy Of Cu(Ii) Is Low
pdb|3AWT|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
20 Hr: Occupancy Of Cu(Ii) Is High
pdb|3AWU|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
40 H
pdb|3AWV|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
80 Hr: Occupancy Of Cua Is Low
pdb|3AWW|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Soaked In A Cu(Ii)-Containing Solution For
80 Hr: Occupancy Of Cua Is High
pdb|3AWX|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie H82q Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
pdb|3AWY|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie M84l Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
pdb|3AWZ|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie H97q Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
pdb|3AX0|A Chain A, Crystal Structure Of Streptomyces Tyrosinase In A Complex
With Caddie Y98f Mutant Soaked In A Cu(Ii)-Containing
Solution For 80 Hr
Length = 281
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 325 HNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHSNIDRMWTIWR 370
HN VH+W G + + DP+F+ HH+ +D++W W+
Sbjct: 190 HNRVHVWVGGQMATGV--------SPNDPVFWLHHAYVDKLWAEWQ 227
>pdb|1FOU|A Chain A, Connector Protein From Bacteriophage Phi29
pdb|1FOU|B Chain B, Connector Protein From Bacteriophage Phi29
pdb|1FOU|C Chain C, Connector Protein From Bacteriophage Phi29
pdb|1FOU|D Chain D, Connector Protein From Bacteriophage Phi29
pdb|1FOU|E Chain E, Connector Protein From Bacteriophage Phi29
pdb|1FOU|F Chain F, Connector Protein From Bacteriophage Phi29
pdb|1FOU|G Chain G, Connector Protein From Bacteriophage Phi29
pdb|1FOU|H Chain H, Connector Protein From Bacteriophage Phi29
pdb|1FOU|I Chain I, Connector Protein From Bacteriophage Phi29
pdb|1FOU|J Chain J, Connector Protein From Bacteriophage Phi29
pdb|1FOU|K Chain K, Connector Protein From Bacteriophage Phi29
pdb|1FOU|L Chain L, Connector Protein From Bacteriophage Phi29
Length = 309
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 321 ENAPHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHS 360
+NA PV + DN Q +L+ + N Y G P+ FAH +
Sbjct: 152 QNAQKTPVLIRANDNNQLSLKQVYNQYE-GNAPVIFAHEA 190
>pdb|1IJG|A Chain A, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|B Chain B, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|C Chain C, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|D Chain D, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|E Chain E, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|F Chain F, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|G Chain G, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|H Chain H, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|I Chain I, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|J Chain J, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|K Chain K, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1IJG|L Chain L, Structure Of The Bacteriophage Phi29 Head-Tail Connector
Protein
pdb|1JNB|A Chain A, Connector Protein From Bacteriophage Phi29
pdb|1JNB|B Chain B, Connector Protein From Bacteriophage Phi29
pdb|1JNB|C Chain C, Connector Protein From Bacteriophage Phi29
pdb|1JNB|D Chain D, Connector Protein From Bacteriophage Phi29
pdb|1JNB|E Chain E, Connector Protein From Bacteriophage Phi29
pdb|1JNB|F Chain F, Connector Protein From Bacteriophage Phi29
pdb|1JNB|G Chain G, Connector Protein From Bacteriophage Phi29
pdb|1JNB|H Chain H, Connector Protein From Bacteriophage Phi29
pdb|1JNB|I Chain I, Connector Protein From Bacteriophage Phi29
pdb|1JNB|J Chain J, Connector Protein From Bacteriophage Phi29
pdb|1JNB|K Chain K, Connector Protein From Bacteriophage Phi29
pdb|1JNB|L Chain L, Connector Protein From Bacteriophage Phi29
pdb|1H5W|A Chain A, 2.1a Bacteriophage Phi-29 Connector
pdb|1H5W|B Chain B, 2.1a Bacteriophage Phi-29 Connector
pdb|1H5W|C Chain C, 2.1a Bacteriophage Phi-29 Connector
Length = 309
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 321 ENAPHNPVHLWCGDNTQPNLENMGNFYSAGRDPIFFAHHS 360
+NA PV + DN Q +L+ + N Y G P+ FAH +
Sbjct: 152 QNAQKTPVLIRANDNNQLSLKQVYNQYE-GNAPVIFAHEA 190
>pdb|2GUW|A Chain A, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
pdb|2GUW|B Chain B, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
pdb|2GUW|C Chain C, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
Length = 484
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 375 KRTNFTEPDWLDSAFLFYDENANLVRVKVRDCLDTKNLG---------YVYQDVEIPWQN 425
K TN T LD Y+++ N +R + D +D L +VY + + W
Sbjct: 4 KGTNLTPEQALDRLEELYEQSVNALREAIADYVDNGTLPDPHARLNGLFVYPSLSVSWDG 63
Query: 426 SKPSP 430
+ P+P
Sbjct: 64 ATPNP 68
>pdb|2F1N|A Chain A, Structure Of Cdtb, The Biologically Active Subunit Of
Cytolethal Distending Toxin
Length = 262
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 292 MVSNGKTSKLFLGSPYRAGDDPEPGSGSIENAPHNPVHLWCGDNTQPNL-ENMGNFYSAG 350
+VSN + ++F+ SP R G P G +A + +N P L E + NF+
Sbjct: 111 LVSNRRADEVFVLSPVRQGGRPLLGIRIGNDAFFTAHAIAMRNNDAPALVEEVYNFFRDS 170
Query: 351 RDPI 354
RDP+
Sbjct: 171 RDPV 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,639,919
Number of Sequences: 62578
Number of extensions: 658225
Number of successful extensions: 1197
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 20
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)