Query 042557
Match_columns 545
No_of_seqs 134 out of 143
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:20:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 99.9 2.6E-18 5.6E-23 207.3 47.2 312 37-359 1408-1762(1930)
2 PF01576 Myosin_tail_1: Myosin 99.7 4.3E-19 9.3E-24 205.1 0.0 332 17-359 330-704 (859)
3 TIGR02169 SMC_prok_A chromosom 99.5 1.6E-09 3.4E-14 128.2 48.4 314 4-339 180-498 (1164)
4 PF05701 WEMBL: Weak chloropla 99.5 3.2E-10 6.9E-15 125.5 39.7 196 68-264 278-473 (522)
5 TIGR02168 SMC_prok_B chromosom 99.5 2.1E-09 4.6E-14 126.6 48.9 146 4-149 182-331 (1179)
6 TIGR02169 SMC_prok_A chromosom 99.4 3.3E-08 7.1E-13 117.1 47.3 198 4-201 187-389 (1164)
7 COG1196 Smc Chromosome segrega 99.3 5.6E-08 1.2E-12 116.9 47.9 306 4-341 189-498 (1163)
8 PF05701 WEMBL: Weak chloropla 99.3 1E-06 2.2E-11 97.9 49.1 361 14-379 33-468 (522)
9 PRK02224 chromosome segregatio 99.2 1.9E-06 4.1E-11 100.6 51.9 210 125-336 361-604 (880)
10 TIGR02168 SMC_prok_B chromosom 99.1 2.4E-06 5.2E-11 101.0 47.0 195 5-199 190-388 (1179)
11 PRK02224 chromosome segregatio 99.1 1.9E-05 4E-10 92.4 52.5 201 151-352 352-579 (880)
12 TIGR00606 rad50 rad50. This fa 99.1 1E-05 2.3E-10 98.6 47.9 59 293-351 1051-1111(1311)
13 PF07888 CALCOCO1: Calcium bin 99.0 2.3E-05 4.9E-10 86.8 44.8 88 201-288 318-405 (546)
14 PRK04863 mukB cell division pr 99.0 1.3E-05 2.8E-10 98.3 44.2 334 4-358 310-665 (1486)
15 KOG0161 Myosin class II heavy 99.0 0.00011 2.4E-09 91.2 50.9 152 125-277 1398-1549(1930)
16 PF10174 Cast: RIM-binding pro 98.9 3.3E-05 7.2E-10 89.1 43.7 284 43-327 287-586 (775)
17 PF10174 Cast: RIM-binding pro 98.9 0.00015 3.3E-09 83.8 47.3 103 247-349 555-696 (775)
18 COG1196 Smc Chromosome segrega 98.9 0.00015 3.3E-09 87.7 48.4 97 20-116 672-768 (1163)
19 PF00038 Filament: Intermediat 98.8 0.00018 3.8E-09 74.4 37.6 134 50-183 4-138 (312)
20 PF07888 CALCOCO1: Calcium bin 98.7 0.00074 1.6E-08 75.1 43.9 47 284-330 412-458 (546)
21 PRK03918 chromosome segregatio 98.7 0.0019 4.2E-08 75.5 50.9 43 286-328 663-705 (880)
22 KOG4674 Uncharacterized conser 98.6 0.0024 5.3E-08 78.8 47.4 307 14-337 635-953 (1822)
23 TIGR00606 rad50 rad50. This fa 98.6 0.0066 1.4E-07 74.7 51.2 196 158-355 884-1085(1311)
24 KOG4674 Uncharacterized conser 98.6 0.0026 5.6E-08 78.6 44.9 81 3-83 804-884 (1822)
25 PF00261 Tropomyosin: Tropomyo 98.6 0.00013 2.9E-09 73.2 29.0 213 103-337 12-224 (237)
26 KOG4673 Transcription factor T 98.5 0.004 8.6E-08 70.1 41.4 328 3-333 397-762 (961)
27 PF00038 Filament: Intermediat 98.5 0.0022 4.7E-08 66.3 40.1 45 284-328 257-301 (312)
28 PRK01156 chromosome segregatio 98.5 0.0066 1.4E-07 71.6 51.1 19 10-28 307-325 (895)
29 PF00261 Tropomyosin: Tropomyo 98.4 0.00084 1.8E-08 67.5 29.9 139 40-199 19-157 (237)
30 KOG0977 Nuclear envelope prote 98.4 0.00094 2E-08 74.3 31.5 230 42-291 91-333 (546)
31 KOG0250 DNA repair protein RAD 98.2 0.017 3.7E-07 68.3 39.2 78 264-341 390-467 (1074)
32 KOG0971 Microtubule-associated 98.2 0.029 6.3E-07 65.1 43.0 223 97-327 302-542 (1243)
33 KOG0964 Structural maintenance 98.2 0.034 7.4E-07 65.1 39.6 135 5-153 188-326 (1200)
34 KOG0996 Structural maintenance 98.2 0.039 8.5E-07 65.7 45.1 151 232-382 464-638 (1293)
35 PRK01156 chromosome segregatio 98.2 0.039 8.4E-07 65.2 50.4 57 297-353 675-731 (895)
36 KOG0963 Transcription factor/C 98.1 0.016 3.4E-07 65.1 35.2 202 126-330 227-438 (629)
37 PF01576 Myosin_tail_1: Myosin 98.1 4.3E-07 9.4E-12 106.1 0.0 299 39-351 155-460 (859)
38 KOG0996 Structural maintenance 98.1 0.044 9.5E-07 65.3 45.9 87 268-354 521-607 (1293)
39 PRK04778 septation ring format 98.1 0.041 8.8E-07 62.2 45.5 322 5-328 109-508 (569)
40 PRK04778 septation ring format 98.1 0.041 9E-07 62.2 42.4 191 160-358 228-431 (569)
41 KOG0933 Structural maintenance 98.0 0.015 3.2E-07 68.1 33.2 240 128-392 709-953 (1174)
42 KOG0977 Nuclear envelope prote 98.0 0.028 6E-07 62.9 33.1 152 47-205 39-191 (546)
43 KOG0971 Microtubule-associated 98.0 0.059 1.3E-06 62.7 35.6 152 170-336 333-502 (1243)
44 PF06160 EzrA: Septation ring 97.9 0.076 1.6E-06 60.0 45.0 343 8-359 60-428 (560)
45 PF05667 DUF812: Protein of un 97.7 0.14 3E-06 58.4 34.3 186 53-261 324-512 (594)
46 PF09726 Macoilin: Transmembra 97.7 0.077 1.7E-06 61.5 31.9 254 103-386 422-683 (697)
47 KOG0250 DNA repair protein RAD 97.7 0.25 5.5E-06 58.9 47.0 54 215-268 668-724 (1074)
48 PHA02562 46 endonuclease subun 97.6 0.2 4.3E-06 55.8 35.2 40 159-198 334-373 (562)
49 PF09726 Macoilin: Transmembra 97.6 0.1 2.3E-06 60.4 31.1 64 279-356 598-661 (697)
50 PHA02562 46 endonuclease subun 97.6 0.097 2.1E-06 58.2 30.1 94 249-342 301-397 (562)
51 PRK04863 mukB cell division pr 97.6 0.45 9.8E-06 59.5 46.9 59 294-352 556-614 (1486)
52 KOG0612 Rho-associated, coiled 97.6 0.37 8.1E-06 58.0 44.5 79 272-351 718-803 (1317)
53 PRK11637 AmiB activator; Provi 97.5 0.2 4.4E-06 54.5 32.0 50 179-228 204-253 (428)
54 KOG0018 Structural maintenance 97.4 0.6 1.3E-05 55.7 34.5 82 226-307 388-469 (1141)
55 KOG0995 Centromere-associated 97.3 0.46 9.9E-06 53.4 41.5 285 65-359 260-553 (581)
56 KOG0994 Extracellular matrix g 97.3 0.72 1.6E-05 55.4 42.8 217 6-230 1417-1634(1758)
57 PF05911 DUF869: Plant protein 97.3 0.31 6.7E-06 57.0 29.7 243 66-333 19-295 (769)
58 KOG0933 Structural maintenance 97.2 0.87 1.9E-05 54.1 42.8 109 126-238 786-894 (1174)
59 PF12128 DUF3584: Protein of u 97.2 1.1 2.4E-05 55.1 46.8 47 36-82 345-391 (1201)
60 COG1579 Zn-ribbon protein, pos 97.1 0.15 3.3E-06 51.8 22.6 116 54-176 14-131 (239)
61 PF15619 Lebercilin: Ciliary p 97.1 0.31 6.8E-06 48.0 25.2 51 219-276 143-193 (194)
62 COG1579 Zn-ribbon protein, pos 97.1 0.21 4.6E-06 50.8 23.0 52 124-175 93-144 (239)
63 PLN03188 kinesin-12 family pro 97.0 1.4 3E-05 53.8 34.3 147 135-317 1073-1232(1320)
64 PF14915 CCDC144C: CCDC144C pr 96.9 0.76 1.7E-05 48.0 36.3 217 73-325 65-300 (305)
65 PF12718 Tropomyosin_1: Tropom 96.9 0.34 7.4E-06 45.5 20.9 45 74-118 17-61 (143)
66 PF07111 HCR: Alpha helical co 96.8 1.4 3.1E-05 50.6 42.7 264 6-308 329-629 (739)
67 PF09730 BicD: Microtubule-ass 96.8 1.6 3.4E-05 50.9 40.4 333 6-360 255-690 (717)
68 PF04849 HAP1_N: HAP1 N-termin 96.8 0.88 1.9E-05 47.9 29.0 169 36-207 62-251 (306)
69 PF14662 CCDC155: Coiled-coil 96.8 0.61 1.3E-05 45.9 26.9 120 42-161 7-129 (193)
70 KOG0995 Centromere-associated 96.8 1.4 3E-05 49.7 42.2 77 159-235 429-505 (581)
71 PF04849 HAP1_N: HAP1 N-termin 96.8 0.93 2E-05 47.7 25.5 143 171-338 162-304 (306)
72 PF09730 BicD: Microtubule-ass 96.8 1.7 3.8E-05 50.6 45.2 166 4-187 16-181 (717)
73 PF06160 EzrA: Septation ring 96.7 1.7 3.6E-05 49.4 43.3 110 5-114 105-223 (560)
74 PF12718 Tropomyosin_1: Tropom 96.6 0.58 1.3E-05 44.0 20.5 44 45-88 23-66 (143)
75 PF05483 SCP-1: Synaptonemal c 96.6 2 4.3E-05 49.4 49.2 133 6-147 259-397 (786)
76 KOG0994 Extracellular matrix g 96.6 2.7 5.8E-05 50.8 38.9 18 253-270 1660-1677(1758)
77 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.6 0.42 9.1E-06 44.0 19.2 57 215-271 73-129 (132)
78 KOG4643 Uncharacterized coiled 96.6 2.6 5.6E-05 50.3 42.4 71 218-291 382-452 (1195)
79 PF10473 CENP-F_leu_zip: Leuci 96.5 0.72 1.6E-05 43.4 20.3 63 48-110 8-70 (140)
80 KOG1029 Endocytic adaptor prot 96.5 2.5 5.4E-05 49.3 28.5 24 11-35 365-388 (1118)
81 PF15070 GOLGA2L5: Putative go 96.5 2.4 5.2E-05 48.8 41.4 122 85-206 122-246 (617)
82 KOG0976 Rho/Rac1-interacting s 96.5 2.7 5.8E-05 49.1 45.7 101 7-107 98-205 (1265)
83 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.4 0.56 1.2E-05 43.2 18.9 122 162-319 3-128 (132)
84 PF15070 GOLGA2L5: Putative go 96.4 2.6 5.7E-05 48.5 40.0 39 282-320 272-310 (617)
85 COG1340 Uncharacterized archae 96.4 1.6 3.4E-05 45.7 32.5 109 240-348 131-259 (294)
86 PF06008 Laminin_I: Laminin Do 96.4 1.4 3.1E-05 44.9 31.0 58 118-177 85-142 (264)
87 KOG1003 Actin filament-coating 96.3 1.2 2.7E-05 43.9 26.8 183 11-207 7-189 (205)
88 PRK10246 exonuclease subunit S 96.3 4.1 8.9E-05 49.6 43.8 46 160-205 694-739 (1047)
89 PF05483 SCP-1: Synaptonemal c 96.3 3.1 6.8E-05 47.8 50.4 287 44-330 255-554 (786)
90 PRK09039 hypothetical protein; 96.1 1.9 4.1E-05 46.1 23.4 69 158-230 119-187 (343)
91 PF12128 DUF3584: Protein of u 96.1 5.6 0.00012 49.2 47.7 62 53-114 472-533 (1201)
92 PF05557 MAD: Mitotic checkpoi 96.1 0.004 8.6E-08 72.1 3.4 71 160-230 355-428 (722)
93 PF15619 Lebercilin: Ciliary p 96.1 1.7 3.7E-05 42.9 26.1 135 45-186 14-149 (194)
94 PF05911 DUF869: Plant protein 96.1 3 6.5E-05 49.1 26.3 114 95-208 592-705 (769)
95 KOG0612 Rho-associated, coiled 96.0 5.9 0.00013 48.3 40.0 46 249-296 676-721 (1317)
96 PF13870 DUF4201: Domain of un 95.9 1.7 3.6E-05 41.8 21.4 116 5-120 3-126 (177)
97 PRK09039 hypothetical protein; 95.9 1.9 4.1E-05 46.0 22.3 75 159-237 113-187 (343)
98 KOG0976 Rho/Rac1-interacting s 95.9 5.3 0.00011 46.8 48.0 86 27-112 87-175 (1265)
99 PF05667 DUF812: Protein of un 95.8 3.1 6.8E-05 47.7 24.7 186 135-335 329-516 (594)
100 COG5185 HEC1 Protein involved 95.7 4.6 9.9E-05 44.8 33.1 299 52-359 266-594 (622)
101 KOG0946 ER-Golgi vesicle-tethe 95.7 6.2 0.00014 46.3 30.2 123 235-357 801-937 (970)
102 PF05010 TACC: Transforming ac 95.6 2.7 6E-05 42.0 27.7 38 124-161 87-124 (207)
103 COG0419 SbcC ATPase involved i 95.6 7.4 0.00016 46.6 51.5 34 296-329 586-619 (908)
104 KOG0963 Transcription factor/C 95.6 5.8 0.00013 45.3 39.2 214 137-360 185-419 (629)
105 COG3883 Uncharacterized protei 95.5 3.5 7.6E-05 42.7 28.5 170 52-221 33-217 (265)
106 COG4942 Membrane-bound metallo 95.5 5 0.00011 44.1 32.8 73 43-115 38-110 (420)
107 PF09728 Taxilin: Myosin-like 95.5 4.1 8.8E-05 43.0 40.2 89 226-314 209-297 (309)
108 KOG4360 Uncharacterized coiled 95.4 1.5 3.3E-05 48.8 19.3 143 41-186 157-299 (596)
109 PF09789 DUF2353: Uncharacteri 95.4 4.6 9.9E-05 42.9 24.5 158 35-194 8-179 (319)
110 KOG0964 Structural maintenance 95.4 8.7 0.00019 46.1 41.3 79 36-114 685-763 (1200)
111 PF10473 CENP-F_leu_zip: Leuci 95.3 2.6 5.6E-05 39.7 20.4 25 90-114 15-39 (140)
112 PF09789 DUF2353: Uncharacteri 95.3 4.8 0.0001 42.7 27.6 208 123-336 68-305 (319)
113 PF05557 MAD: Mitotic checkpoi 95.2 0.31 6.7E-06 56.7 14.6 55 301-355 564-630 (722)
114 TIGR01843 type_I_hlyD type I s 95.2 5.1 0.00011 42.5 24.3 19 252-270 251-269 (423)
115 PF06008 Laminin_I: Laminin Do 95.2 4.2 9.1E-05 41.5 31.5 126 229-356 130-259 (264)
116 COG4477 EzrA Negative regulato 95.2 7 0.00015 44.0 38.8 197 159-357 226-429 (570)
117 TIGR03185 DNA_S_dndD DNA sulfu 95.2 7.9 0.00017 44.6 39.5 84 247-335 391-474 (650)
118 KOG4643 Uncharacterized coiled 95.1 11 0.00023 45.5 43.0 64 43-106 308-371 (1195)
119 KOG0249 LAR-interacting protei 95.1 3.2 6.8E-05 48.0 21.0 158 39-208 31-188 (916)
120 PF05622 HOOK: HOOK protein; 95.0 0.0068 1.5E-07 70.1 0.0 43 39-81 242-284 (713)
121 TIGR02680 conserved hypothetic 94.9 15 0.00032 46.3 35.5 76 41-116 747-824 (1353)
122 KOG4673 Transcription factor T 94.9 9.8 0.00021 44.0 46.4 110 160-283 521-634 (961)
123 TIGR01843 type_I_hlyD type I s 94.9 6.2 0.00013 41.9 22.2 36 167-202 201-236 (423)
124 KOG0946 ER-Golgi vesicle-tethe 94.8 11 0.00024 44.4 31.4 59 301-361 890-948 (970)
125 PF14662 CCDC155: Coiled-coil 94.8 4.6 0.0001 39.9 27.5 108 54-172 5-112 (193)
126 KOG0980 Actin-binding protein 94.8 12 0.00026 44.4 36.9 122 9-134 338-459 (980)
127 KOG0980 Actin-binding protein 94.8 12 0.00026 44.4 38.5 126 36-161 333-465 (980)
128 PF06818 Fez1: Fez1; InterPro 94.7 5.1 0.00011 39.9 21.9 51 136-186 133-183 (202)
129 PF14915 CCDC144C: CCDC144C pr 94.3 8 0.00017 40.6 36.6 202 18-219 34-246 (305)
130 PF13870 DUF4201: Domain of un 94.2 5.5 0.00012 38.3 22.6 114 43-156 6-120 (177)
131 PF05010 TACC: Transforming ac 94.2 6.8 0.00015 39.2 29.9 42 164-205 85-126 (207)
132 PF10481 CENP-F_N: Cenp-F N-te 94.1 2.3 5E-05 44.1 15.6 61 10-70 5-73 (307)
133 PF09787 Golgin_A5: Golgin sub 94.0 13 0.00029 41.8 30.9 44 306-349 388-431 (511)
134 COG1340 Uncharacterized archae 93.9 9.6 0.00021 40.1 35.5 86 258-343 176-261 (294)
135 KOG0962 DNA repair protein RAD 93.9 22 0.00047 44.1 44.0 84 266-351 1013-1098(1294)
136 COG4942 Membrane-bound metallo 93.9 12 0.00026 41.2 32.1 20 252-271 236-255 (420)
137 KOG0018 Structural maintenance 93.9 20 0.00044 43.5 38.9 47 30-77 148-194 (1141)
138 KOG0999 Microtubule-associated 93.8 15 0.00032 41.7 36.9 317 1-320 5-380 (772)
139 KOG1003 Actin filament-coating 93.8 7.9 0.00017 38.4 27.1 119 55-194 2-120 (205)
140 PF05622 HOOK: HOOK protein; 93.6 0.019 4.2E-07 66.5 0.0 46 280-325 361-406 (713)
141 PF11559 ADIP: Afadin- and alp 93.6 6.3 0.00014 36.8 17.2 64 161-224 86-149 (151)
142 smart00787 Spc7 Spc7 kinetocho 93.4 11 0.00024 39.9 20.0 49 127-175 218-266 (312)
143 PF08317 Spc7: Spc7 kinetochor 93.2 13 0.00028 39.3 28.5 10 255-264 277-286 (325)
144 PF12325 TMF_TATA_bd: TATA ele 93.2 6 0.00013 36.3 15.3 51 246-296 67-117 (120)
145 PF10498 IFT57: Intra-flagella 93.1 5.7 0.00012 42.9 17.6 100 82-181 217-320 (359)
146 PF04156 IncA: IncA protein; 93.0 7.2 0.00016 37.5 16.6 31 53-83 84-114 (191)
147 PRK11281 hypothetical protein; 92.6 33 0.00072 42.4 34.3 16 184-199 200-215 (1113)
148 TIGR02680 conserved hypothetic 92.5 38 0.00082 42.7 41.4 86 12-97 234-323 (1353)
149 COG3883 Uncharacterized protei 92.3 16 0.00034 38.0 26.4 65 47-111 35-99 (265)
150 PF09787 Golgin_A5: Golgin sub 92.2 24 0.00051 39.7 37.5 81 127-207 221-312 (511)
151 PF04156 IncA: IncA protein; 92.2 11 0.00024 36.2 16.8 38 77-114 80-117 (191)
152 COG5185 HEC1 Protein involved 92.1 23 0.0005 39.5 38.4 21 311-331 595-615 (622)
153 PF13514 AAA_27: AAA domain 92.1 37 0.0008 41.8 46.4 51 163-213 788-838 (1111)
154 PF13851 GAS: Growth-arrest sp 92.0 14 0.0003 36.7 22.7 27 189-215 149-175 (201)
155 COG0419 SbcC ATPase involved i 91.9 35 0.00076 41.0 51.4 23 3-25 173-195 (908)
156 PF13851 GAS: Growth-arrest sp 91.6 15 0.00034 36.3 25.5 102 17-122 29-130 (201)
157 PF08614 ATG16: Autophagy prot 91.6 1.9 4.1E-05 42.1 10.8 72 37-108 96-167 (194)
158 TIGR03007 pepcterm_ChnLen poly 91.5 26 0.00056 38.8 22.8 16 44-59 169-184 (498)
159 COG4477 EzrA Negative regulato 91.4 29 0.00064 39.3 38.8 205 77-308 189-408 (570)
160 TIGR03007 pepcterm_ChnLen poly 91.4 26 0.00057 38.7 24.0 32 41-72 202-233 (498)
161 PF13514 AAA_27: AAA domain 91.2 45 0.00098 41.0 42.0 10 324-333 947-956 (1111)
162 PF12325 TMF_TATA_bd: TATA ele 90.6 14 0.00029 34.0 15.6 42 166-207 72-113 (120)
163 PF04111 APG6: Autophagy prote 90.6 4.9 0.00011 42.5 13.5 78 206-295 14-91 (314)
164 KOG0979 Structural maintenance 90.6 48 0.001 40.2 28.6 24 45-68 176-199 (1072)
165 PRK10884 SH3 domain-containing 90.6 3.2 7E-05 41.4 11.4 58 234-291 112-169 (206)
166 COG4372 Uncharacterized protei 90.4 31 0.00066 37.7 31.8 104 100-203 110-213 (499)
167 PF15254 CCDC14: Coiled-coil d 90.1 36 0.00078 40.2 20.4 18 13-30 399-416 (861)
168 COG4026 Uncharacterized protei 89.8 3.6 7.7E-05 41.6 10.8 64 275-338 142-205 (290)
169 PF04111 APG6: Autophagy prote 89.7 8.1 0.00018 40.9 14.2 50 158-207 74-123 (314)
170 PF09728 Taxilin: Myosin-like 89.6 31 0.00067 36.5 41.0 48 56-103 21-68 (309)
171 KOG4403 Cell surface glycoprot 89.6 27 0.00059 38.6 17.9 160 72-242 243-424 (575)
172 PF10498 IFT57: Intra-flagella 89.3 14 0.00031 39.8 15.9 55 96-150 263-317 (359)
173 PF10168 Nup88: Nuclear pore c 89.2 41 0.0009 39.6 20.7 13 252-264 697-709 (717)
174 PF15254 CCDC14: Coiled-coil d 89.2 54 0.0012 38.8 23.7 193 134-343 356-555 (861)
175 TIGR01005 eps_transp_fam exopo 89.1 53 0.0011 38.5 22.5 16 192-207 378-393 (754)
176 PF10481 CENP-F_N: Cenp-F N-te 89.0 32 0.0007 35.9 18.6 106 52-157 20-132 (307)
177 PF06818 Fez1: Fez1; InterPro 88.5 29 0.00062 34.8 21.5 20 221-240 151-170 (202)
178 smart00787 Spc7 Spc7 kinetocho 88.4 37 0.00081 36.0 28.5 45 184-228 240-284 (312)
179 PF00769 ERM: Ezrin/radixin/mo 88.3 32 0.0007 35.1 18.2 52 157-208 77-128 (246)
180 PF10146 zf-C4H2: Zinc finger- 88.2 26 0.00056 35.6 16.0 39 160-198 65-103 (230)
181 PF09738 DUF2051: Double stran 88.0 11 0.00024 39.8 13.6 90 9-98 78-167 (302)
182 KOG1029 Endocytic adaptor prot 87.6 69 0.0015 38.1 35.4 102 119-221 436-544 (1118)
183 KOG1853 LIS1-interacting prote 87.1 40 0.00088 34.9 20.7 85 244-335 88-172 (333)
184 PF08614 ATG16: Autophagy prot 87.0 11 0.00024 36.8 12.3 9 166-174 169-177 (194)
185 KOG0999 Microtubule-associated 87.0 62 0.0014 37.0 45.4 94 247-343 318-458 (772)
186 TIGR03017 EpsF chain length de 86.7 51 0.0011 35.7 21.2 30 175-204 341-370 (444)
187 PF09755 DUF2046: Uncharacteri 85.9 52 0.0011 35.0 33.3 21 179-199 152-172 (310)
188 PF09755 DUF2046: Uncharacteri 85.9 52 0.0011 35.0 34.2 13 279-291 265-277 (310)
189 KOG0804 Cytoplasmic Zn-finger 85.8 58 0.0013 36.3 17.8 107 97-207 352-458 (493)
190 PF06548 Kinesin-related: Kine 85.7 65 0.0014 35.9 31.4 51 135-185 303-353 (488)
191 PF14073 Cep57_CLD: Centrosome 85.6 38 0.00083 33.3 18.0 86 263-352 59-148 (178)
192 PF04012 PspA_IM30: PspA/IM30 85.4 40 0.00087 33.3 17.8 117 222-344 26-146 (221)
193 KOG1853 LIS1-interacting prote 85.0 51 0.0011 34.2 21.4 92 91-185 58-156 (333)
194 PF11559 ADIP: Afadin- and alp 84.6 35 0.00075 31.8 17.4 55 58-112 60-114 (151)
195 TIGR00634 recN DNA repair prot 83.7 86 0.0019 35.7 25.2 8 421-428 474-481 (563)
196 KOG0978 E3 ubiquitin ligase in 83.4 1E+02 0.0022 36.3 44.3 165 173-338 451-622 (698)
197 PF05276 SH3BP5: SH3 domain-bi 83.3 58 0.0013 33.4 25.1 174 185-359 16-205 (239)
198 PF08581 Tup_N: Tup N-terminal 82.7 30 0.00064 29.6 11.7 70 150-226 6-75 (79)
199 PRK10884 SH3 domain-containing 82.7 14 0.00031 36.9 10.9 76 253-338 92-167 (206)
200 PF15066 CAGE1: Cancer-associa 82.6 89 0.0019 35.0 27.5 32 148-179 404-435 (527)
201 PLN02939 transferase, transfer 82.5 1.3E+02 0.0028 36.8 22.1 180 178-365 158-351 (977)
202 KOG0239 Kinesin (KAR3 subfamil 82.2 1.1E+02 0.0024 35.9 20.6 54 219-273 266-319 (670)
203 KOG4809 Rab6 GTPase-interactin 82.0 1E+02 0.0022 35.3 27.5 254 57-341 236-505 (654)
204 PF11570 E2R135: Coiled-coil r 81.9 21 0.00046 33.3 10.8 113 174-299 6-122 (136)
205 PF10146 zf-C4H2: Zinc finger- 81.6 65 0.0014 32.8 15.4 45 133-177 59-103 (230)
206 KOG0239 Kinesin (KAR3 subfamil 81.4 1.2E+02 0.0026 35.7 20.6 73 218-291 244-316 (670)
207 PF00769 ERM: Ezrin/radixin/mo 80.8 70 0.0015 32.7 17.8 38 167-204 80-117 (246)
208 KOG0979 Structural maintenance 80.5 1.5E+02 0.0032 36.3 26.3 108 39-146 251-358 (1072)
209 PF09738 DUF2051: Double stran 80.4 37 0.0008 36.0 13.5 80 37-116 78-157 (302)
210 COG2433 Uncharacterized conser 80.3 64 0.0014 37.3 16.0 14 321-334 633-646 (652)
211 PF06156 DUF972: Protein of un 80.2 8.9 0.00019 34.5 7.7 54 243-296 4-57 (107)
212 PF05384 DegS: Sensor protein 80.1 59 0.0013 31.4 19.9 48 47-94 24-71 (159)
213 PF15290 Syntaphilin: Golgi-lo 79.6 44 0.00096 35.1 13.3 21 208-228 117-137 (305)
214 PRK10929 putative mechanosensi 79.2 1.8E+02 0.0038 36.3 34.5 26 180-205 177-202 (1109)
215 PF08647 BRE1: BRE1 E3 ubiquit 78.8 44 0.00096 29.2 12.1 17 92-108 45-61 (96)
216 PF05384 DegS: Sensor protein 78.0 68 0.0015 30.9 22.4 131 75-205 24-155 (159)
217 PF10226 DUF2216: Uncharacteri 77.8 76 0.0016 31.5 13.7 70 277-357 64-144 (195)
218 PF15397 DUF4618: Domain of un 76.9 98 0.0021 32.2 29.6 23 191-213 121-143 (258)
219 COG2433 Uncharacterized conser 76.8 40 0.00087 38.8 13.1 35 11-45 355-397 (652)
220 PF04012 PspA_IM30: PspA/IM30 76.7 81 0.0018 31.1 23.1 41 74-114 33-73 (221)
221 PRK10246 exonuclease subunit S 76.4 2E+02 0.0043 35.5 43.4 26 250-275 773-798 (1047)
222 PF14197 Cep57_CLD_2: Centroso 76.2 40 0.00087 28.0 9.9 14 58-71 6-19 (69)
223 PF15294 Leu_zip: Leucine zipp 76.2 1.1E+02 0.0023 32.2 24.9 45 90-134 130-174 (278)
224 COG3074 Uncharacterized protei 76.0 46 0.001 28.0 10.0 56 61-116 8-63 (79)
225 PRK13169 DNA replication intia 75.8 14 0.0003 33.5 7.6 52 243-294 4-55 (110)
226 PF06005 DUF904: Protein of un 75.6 47 0.001 27.8 10.5 45 61-105 8-52 (72)
227 KOG0962 DNA repair protein RAD 75.5 2.3E+02 0.005 35.7 44.4 32 40-71 737-768 (1294)
228 PF04949 Transcrip_act: Transc 75.4 79 0.0017 30.3 16.8 71 205-275 74-144 (159)
229 COG1842 PspA Phage shock prote 75.3 99 0.0021 31.4 15.8 114 222-341 27-144 (225)
230 PF05335 DUF745: Protein of un 74.8 92 0.002 30.8 18.0 109 82-197 64-172 (188)
231 PF05335 DUF745: Protein of un 74.7 93 0.002 30.8 16.2 107 8-114 67-173 (188)
232 KOG0243 Kinesin-like protein [ 74.0 2.3E+02 0.0049 35.0 33.3 41 188-228 519-559 (1041)
233 COG4026 Uncharacterized protei 73.9 31 0.00067 35.2 10.2 40 75-114 132-171 (290)
234 KOG0978 E3 ubiquitin ligase in 73.8 1.9E+02 0.0042 34.1 41.7 61 258-318 465-525 (698)
235 PF02183 HALZ: Homeobox associ 72.6 13 0.00029 28.4 5.7 41 68-108 2-42 (45)
236 PF05278 PEARLI-4: Arabidopsis 72.3 81 0.0018 33.0 13.1 48 281-328 206-253 (269)
237 KOG0249 LAR-interacting protei 72.0 2.2E+02 0.0047 33.9 22.9 54 101-154 137-190 (916)
238 KOG0243 Kinesin-like protein [ 71.8 2.5E+02 0.0055 34.6 42.6 136 5-144 405-549 (1041)
239 PF07058 Myosin_HC-like: Myosi 71.3 1.5E+02 0.0032 31.7 18.1 56 237-293 99-154 (351)
240 PF08317 Spc7: Spc7 kinetochor 70.6 1.5E+02 0.0032 31.4 30.6 17 280-296 274-290 (325)
241 PF09304 Cortex-I_coil: Cortex 70.0 86 0.0019 28.4 15.6 17 136-152 60-76 (107)
242 PF10234 Cluap1: Clusterin-ass 69.9 1.3E+02 0.0029 31.4 14.2 68 126-193 189-256 (267)
243 KOG0982 Centrosomal protein Nu 69.7 1.9E+02 0.0041 32.3 23.3 95 97-191 295-389 (502)
244 KOG0288 WD40 repeat protein Ti 69.5 1.9E+02 0.0041 32.1 15.6 91 252-344 32-122 (459)
245 KOG1962 B-cell receptor-associ 69.3 84 0.0018 31.8 12.1 30 39-68 110-145 (216)
246 TIGR01000 bacteriocin_acc bact 69.0 1.9E+02 0.0041 31.9 24.5 18 12-29 101-118 (457)
247 PF10186 Atg14: UV radiation r 69.0 1.3E+02 0.0029 30.3 19.9 15 342-356 199-213 (302)
248 PF04582 Reo_sigmaC: Reovirus 68.8 11 0.00023 40.3 6.1 103 44-146 29-131 (326)
249 PF12795 MscS_porin: Mechanose 68.7 1.3E+02 0.0029 30.1 22.4 77 129-205 101-179 (240)
250 KOG4360 Uncharacterized coiled 68.3 2.2E+02 0.0048 32.5 22.8 172 36-207 62-250 (596)
251 PF11932 DUF3450: Protein of u 67.8 1.4E+02 0.0031 30.2 16.9 32 135-166 85-116 (251)
252 PF07889 DUF1664: Protein of u 67.7 1.1E+02 0.0023 28.6 12.4 24 35-58 42-65 (126)
253 PRK04406 hypothetical protein; 67.0 43 0.00093 28.3 8.2 53 58-110 5-57 (75)
254 TIGR01000 bacteriocin_acc bact 66.6 2.1E+02 0.0045 31.6 24.1 7 468-474 397-403 (457)
255 TIGR03495 phage_LysB phage lys 66.3 91 0.002 29.3 11.0 77 266-342 24-100 (135)
256 PF10267 Tmemb_cc2: Predicted 65.5 2.1E+02 0.0046 31.5 15.3 73 135-207 213-293 (395)
257 TIGR03185 DNA_S_dndD DNA sulfu 64.9 2.7E+02 0.0059 32.3 41.1 19 245-263 396-414 (650)
258 PF06810 Phage_GP20: Phage min 64.7 1E+02 0.0022 29.4 11.3 25 184-208 52-76 (155)
259 PF07106 TBPIP: Tat binding pr 64.6 51 0.0011 31.3 9.4 68 252-331 70-137 (169)
260 TIGR00634 recN DNA repair prot 64.4 2.6E+02 0.0056 31.9 25.5 10 346-355 380-389 (563)
261 PRK10476 multidrug resistance 64.2 1.9E+02 0.0042 30.3 17.5 11 253-263 151-161 (346)
262 PF07139 DUF1387: Protein of u 64.2 2E+02 0.0044 30.6 15.1 107 186-302 156-263 (302)
263 PF14197 Cep57_CLD_2: Centroso 64.1 84 0.0018 26.1 10.0 25 125-149 38-62 (69)
264 PF05266 DUF724: Protein of un 64.0 1.6E+02 0.0034 29.2 17.1 52 156-207 132-183 (190)
265 COG1842 PspA Phage shock prote 63.9 1.7E+02 0.0037 29.7 22.4 48 67-114 27-74 (225)
266 PF10212 TTKRSYEDQ: Predicted 63.9 1.9E+02 0.0042 32.9 14.8 63 77-146 419-481 (518)
267 PF13863 DUF4200: Domain of un 63.0 1.1E+02 0.0024 27.2 17.0 44 123-166 42-85 (126)
268 PF05276 SH3BP5: SH3 domain-bi 62.9 1.9E+02 0.0041 29.8 25.6 65 4-68 35-109 (239)
269 COG3074 Uncharacterized protei 62.2 96 0.0021 26.2 9.3 50 58-107 26-75 (79)
270 PRK02119 hypothetical protein; 61.8 51 0.0011 27.6 7.7 53 58-110 3-55 (73)
271 TIGR02449 conserved hypothetic 61.6 69 0.0015 26.5 8.2 47 277-323 16-62 (65)
272 KOG3647 Predicted coiled-coil 61.4 1.9E+02 0.0042 30.4 13.1 29 126-154 132-160 (338)
273 KOG2991 Splicing regulator [RN 61.4 2.1E+02 0.0046 29.9 21.7 63 160-226 241-303 (330)
274 PRK15422 septal ring assembly 61.3 1.1E+02 0.0023 26.4 10.2 51 61-111 8-58 (79)
275 KOG1899 LAR transmembrane tyro 61.1 3.3E+02 0.0071 32.0 19.2 51 41-91 109-159 (861)
276 KOG2010 Double stranded RNA bi 60.6 88 0.0019 33.6 10.8 81 17-97 121-201 (405)
277 PRK03947 prefoldin subunit alp 60.6 1.4E+02 0.003 27.4 13.5 24 176-199 13-36 (140)
278 TIGR03017 EpsF chain length de 60.6 2.5E+02 0.0054 30.4 25.2 22 43-64 178-199 (444)
279 PF15290 Syntaphilin: Golgi-lo 60.3 2.3E+02 0.005 29.9 13.9 71 46-116 71-141 (305)
280 PRK00106 hypothetical protein; 60.3 3.1E+02 0.0068 31.4 24.2 24 3-26 41-64 (535)
281 TIGR01069 mutS2 MutS2 family p 59.9 1.5E+02 0.0033 35.3 13.9 19 499-517 720-738 (771)
282 PF07106 TBPIP: Tat binding pr 59.3 49 0.0011 31.5 8.2 33 52-84 74-106 (169)
283 KOG0972 Huntingtin interacting 59.0 2.4E+02 0.0052 30.1 13.5 57 120-176 266-322 (384)
284 PF09325 Vps5: Vps5 C terminal 58.1 1.9E+02 0.0042 28.3 26.7 22 186-207 166-187 (236)
285 PF05103 DivIVA: DivIVA protei 56.4 5.4 0.00012 35.9 1.1 30 199-228 91-120 (131)
286 KOG1937 Uncharacterized conser 55.9 3.4E+02 0.0074 30.5 32.7 165 40-215 276-443 (521)
287 PRK00409 recombination and DNA 55.4 4.4E+02 0.0095 31.6 17.1 18 499-516 731-748 (782)
288 KOG2264 Exostosin EXT1L [Signa 55.3 95 0.0021 35.8 10.5 69 45-113 81-149 (907)
289 KOG2264 Exostosin EXT1L [Signa 54.8 56 0.0012 37.5 8.6 58 41-98 91-148 (907)
290 PF08581 Tup_N: Tup N-terminal 54.2 1.4E+02 0.003 25.6 11.1 18 5-22 1-18 (79)
291 KOG4302 Microtubule-associated 54.2 4.3E+02 0.0093 31.2 26.6 94 46-139 50-143 (660)
292 PF15066 CAGE1: Cancer-associa 54.1 3.7E+02 0.008 30.4 27.3 115 72-192 391-508 (527)
293 PF06810 Phage_GP20: Phage min 52.4 94 0.002 29.6 8.8 18 47-64 31-48 (155)
294 PF11172 DUF2959: Protein of u 52.3 2.6E+02 0.0056 28.1 21.7 73 250-334 115-187 (201)
295 PRK10803 tol-pal system protei 52.2 85 0.0018 32.3 9.1 58 75-132 44-101 (263)
296 TIGR02894 DNA_bind_RsfA transc 51.8 2.4E+02 0.0051 27.4 12.9 44 52-95 99-142 (161)
297 PRK09841 cryptic autophosphory 51.7 4.7E+02 0.01 30.9 18.6 22 189-210 369-390 (726)
298 PRK10869 recombination and rep 51.6 4.2E+02 0.0091 30.3 26.4 15 217-231 308-322 (553)
299 PRK04325 hypothetical protein; 51.4 1E+02 0.0022 25.9 7.8 49 62-110 7-55 (74)
300 PF04102 SlyX: SlyX; InterPro 50.7 79 0.0017 26.0 7.0 47 64-110 4-50 (69)
301 PF04582 Reo_sigmaC: Reovirus 50.4 31 0.00068 36.9 5.7 84 124-207 67-150 (326)
302 PF08826 DMPK_coil: DMPK coile 50.1 1.4E+02 0.0031 24.4 9.6 41 182-226 17-57 (61)
303 TIGR03752 conj_TIGR03752 integ 50.0 1.9E+02 0.0041 32.6 11.8 9 421-429 316-324 (472)
304 KOG1103 Predicted coiled-coil 49.8 3.8E+02 0.0083 29.3 22.9 34 303-337 266-299 (561)
305 PF13815 Dzip-like_N: Iguana/D 49.6 1.1E+02 0.0023 27.7 8.4 55 29-83 59-113 (118)
306 PF06428 Sec2p: GDP/GTP exchan 49.4 40 0.00088 30.0 5.4 72 267-338 7-79 (100)
307 TIGR03319 YmdA_YtgF conserved 48.8 4.5E+02 0.0098 29.9 23.5 14 8-21 25-38 (514)
308 PF03915 AIP3: Actin interacti 48.5 4.3E+02 0.0093 29.5 16.2 66 292-357 249-315 (424)
309 PF11932 DUF3450: Protein of u 48.2 3.1E+02 0.0067 27.7 19.4 74 45-118 23-96 (251)
310 PF03915 AIP3: Actin interacti 47.9 4.4E+02 0.0095 29.4 18.3 89 50-146 213-301 (424)
311 KOG3091 Nuclear pore complex, 47.7 4.4E+02 0.0095 30.0 14.0 49 101-149 350-398 (508)
312 TIGR02977 phageshock_pspA phag 47.6 3E+02 0.0065 27.4 22.9 20 213-232 164-183 (219)
313 KOG2751 Beclin-like protein [S 47.3 4.5E+02 0.0098 29.4 15.5 79 129-207 178-256 (447)
314 PF02403 Seryl_tRNA_N: Seryl-t 46.8 2E+02 0.0043 25.1 10.3 86 232-335 12-99 (108)
315 PF06785 UPF0242: Uncharacteri 46.8 4.2E+02 0.009 28.8 20.3 161 136-331 58-222 (401)
316 PRK02793 phi X174 lysis protei 46.7 1.3E+02 0.0028 25.1 7.7 49 62-110 6-54 (72)
317 PF12329 TMF_DNA_bd: TATA elem 46.7 1.7E+02 0.0038 24.4 9.9 36 284-319 35-70 (74)
318 COG1566 EmrA Multidrug resista 46.3 4.2E+02 0.0091 28.8 14.9 24 279-302 148-171 (352)
319 PRK00409 recombination and DNA 46.2 5.5E+02 0.012 30.8 15.7 33 244-276 517-549 (782)
320 PF02183 HALZ: Homeobox associ 46.0 78 0.0017 24.2 5.8 41 251-291 2-42 (45)
321 TIGR00998 8a0101 efflux pump m 45.5 3.6E+02 0.0079 27.8 15.9 9 287-295 191-199 (334)
322 PRK15178 Vi polysaccharide exp 45.5 4.8E+02 0.01 29.2 18.4 20 48-67 221-240 (434)
323 PF04949 Transcrip_act: Transc 45.3 2.9E+02 0.0063 26.6 14.2 51 292-355 108-158 (159)
324 PF05700 BCAS2: Breast carcino 45.2 3.3E+02 0.0072 27.2 16.3 117 191-321 98-214 (221)
325 PF05103 DivIVA: DivIVA protei 45.1 17 0.00038 32.5 2.5 62 156-217 26-87 (131)
326 PF05529 Bap31: B-cell recepto 45.0 1E+02 0.0022 29.8 8.1 65 10-74 127-192 (192)
327 CHL00019 atpF ATP synthase CF0 45.0 2.9E+02 0.0064 26.6 14.1 52 171-222 71-123 (184)
328 PF12329 TMF_DNA_bd: TATA elem 44.7 1.9E+02 0.0041 24.3 10.2 19 53-71 8-26 (74)
329 TIGR02971 heterocyst_DevB ABC 44.7 3.8E+02 0.0082 27.7 18.5 8 301-308 191-198 (327)
330 PRK00846 hypothetical protein; 44.5 1.5E+02 0.0032 25.4 7.8 50 62-111 11-60 (77)
331 PRK00295 hypothetical protein; 44.3 1.6E+02 0.0034 24.3 7.8 43 66-108 7-49 (68)
332 PF03148 Tektin: Tektin family 43.9 4.6E+02 0.01 28.5 31.6 297 76-382 1-326 (384)
333 KOG4677 Golgi integral membran 43.1 5.4E+02 0.012 29.1 32.0 61 6-67 170-230 (554)
334 PF10234 Cluap1: Clusterin-ass 42.9 4.2E+02 0.0091 27.8 18.7 108 6-116 122-235 (267)
335 PRK00736 hypothetical protein; 42.9 1.3E+02 0.0029 24.7 7.2 43 66-108 7-49 (68)
336 PF06120 Phage_HK97_TLTM: Tail 42.6 4.5E+02 0.0097 28.0 17.6 73 161-233 33-106 (301)
337 PRK09343 prefoldin subunit bet 42.6 2.6E+02 0.0057 25.4 13.5 41 170-210 72-112 (121)
338 KOG4807 F-actin binding protei 42.4 5.2E+02 0.011 28.7 26.6 204 96-337 295-532 (593)
339 KOG4603 TBP-1 interacting prot 41.4 3.6E+02 0.0079 26.6 14.3 56 50-105 79-136 (201)
340 PF03962 Mnd1: Mnd1 family; I 41.2 3.6E+02 0.0078 26.5 13.6 20 181-200 108-127 (188)
341 PF06548 Kinesin-related: Kine 41.0 5.8E+02 0.012 28.8 25.1 57 252-319 408-464 (488)
342 PRK15422 septal ring assembly 40.8 2.4E+02 0.0052 24.3 9.7 11 95-105 63-73 (79)
343 PF15397 DUF4618: Domain of un 40.5 4.5E+02 0.0097 27.4 31.1 32 240-271 186-217 (258)
344 PF07794 DUF1633: Protein of u 40.3 6.2E+02 0.013 29.0 13.7 72 36-107 597-669 (790)
345 PLN02939 transferase, transfer 40.1 8.1E+02 0.018 30.3 29.2 20 275-294 376-395 (977)
346 COG3352 FlaC Putative archaeal 40.1 3.5E+02 0.0077 26.1 11.0 59 56-114 43-101 (157)
347 TIGR03752 conj_TIGR03752 integ 40.1 3.1E+02 0.0067 31.0 11.5 30 269-298 74-103 (472)
348 KOG1962 B-cell receptor-associ 39.9 4.2E+02 0.0091 26.9 12.5 56 144-199 154-209 (216)
349 PF12240 Angiomotin_C: Angiomo 39.8 4.1E+02 0.0089 26.8 14.2 28 264-291 60-87 (205)
350 PF15233 SYCE1: Synaptonemal c 39.7 3.3E+02 0.0071 25.7 13.0 93 244-336 10-108 (134)
351 PF12761 End3: Actin cytoskele 39.3 3.6E+02 0.0078 27.0 10.8 30 250-279 92-121 (195)
352 PF15456 Uds1: Up-regulated Du 38.8 3.2E+02 0.007 25.3 10.0 89 25-114 11-103 (124)
353 PRK07352 F0F1 ATP synthase sub 38.6 3.6E+02 0.0077 25.7 12.1 9 210-218 106-114 (174)
354 TIGR02338 gimC_beta prefoldin, 38.5 2.8E+02 0.0061 24.6 12.9 40 171-210 69-108 (110)
355 KOG4438 Centromere-associated 38.3 6.1E+02 0.013 28.4 39.3 186 65-260 153-346 (446)
356 PF08580 KAR9: Yeast cortical 37.9 7.5E+02 0.016 29.3 22.0 193 5-229 99-293 (683)
357 PRK06231 F0F1 ATP synthase sub 37.7 4.2E+02 0.0091 26.3 13.8 18 201-218 137-154 (205)
358 PF05266 DUF724: Protein of un 37.3 4.2E+02 0.0091 26.2 14.3 48 135-182 132-179 (190)
359 TIGR01069 mutS2 MutS2 family p 37.3 8E+02 0.017 29.4 15.9 47 339-385 699-753 (771)
360 PF13863 DUF4200: Domain of un 37.1 3E+02 0.0065 24.4 16.7 24 120-143 32-55 (126)
361 PRK10361 DNA recombination pro 36.8 6.8E+02 0.015 28.4 24.6 28 265-292 144-171 (475)
362 PF10805 DUF2730: Protein of u 36.7 3.1E+02 0.0066 24.4 10.4 70 252-321 33-104 (106)
363 PF15456 Uds1: Up-regulated Du 35.8 3.6E+02 0.0078 24.9 12.3 33 147-179 80-112 (124)
364 PF10805 DUF2730: Protein of u 35.7 3.2E+02 0.0069 24.3 9.5 22 55-76 40-61 (106)
365 TIGR00998 8a0101 efflux pump m 35.5 5.1E+02 0.011 26.7 18.0 41 165-205 83-123 (334)
366 PF02994 Transposase_22: L1 tr 35.4 1.1E+02 0.0025 33.0 7.3 8 512-519 330-337 (370)
367 COG4467 Regulator of replicati 35.3 1.6E+02 0.0034 26.9 6.8 45 247-291 8-52 (114)
368 PF08826 DMPK_coil: DMPK coile 35.2 2.5E+02 0.0054 23.0 9.8 33 104-136 23-55 (61)
369 PRK12704 phosphodiesterase; Pr 35.2 7.3E+02 0.016 28.3 23.5 34 81-114 99-132 (520)
370 PRK14147 heat shock protein Gr 35.1 3.8E+02 0.0083 26.0 10.1 36 159-194 22-57 (172)
371 PRK05759 F0F1 ATP synthase sub 35.0 3.7E+02 0.008 24.8 12.2 19 201-219 82-100 (156)
372 PRK08475 F0F1 ATP synthase sub 34.9 4.1E+02 0.0089 25.4 12.1 17 203-219 102-118 (167)
373 PF05546 She9_MDM33: She9 / Md 34.7 5E+02 0.011 26.3 16.6 50 56-105 31-80 (207)
374 PF10211 Ax_dynein_light: Axon 34.7 4.5E+02 0.0098 25.8 15.6 22 123-144 166-187 (189)
375 KOG4005 Transcription factor X 34.5 2.2E+02 0.0047 29.5 8.5 55 264-318 93-147 (292)
376 PRK03598 putative efflux pump 34.3 5.5E+02 0.012 26.7 15.5 20 252-271 143-162 (331)
377 PF14992 TMCO5: TMCO5 family 34.2 5E+02 0.011 27.4 11.4 138 1-146 29-170 (280)
378 PRK12704 phosphodiesterase; Pr 34.0 7.6E+02 0.016 28.2 23.2 15 300-314 147-161 (520)
379 PF00170 bZIP_1: bZIP transcri 33.7 2.4E+02 0.0053 22.4 7.3 9 26-34 16-24 (64)
380 PF07889 DUF1664: Protein of u 33.5 4E+02 0.0087 24.8 13.0 49 158-206 71-119 (126)
381 PF03962 Mnd1: Mnd1 family; I 33.3 4.8E+02 0.01 25.6 13.3 17 177-193 111-127 (188)
382 PF07798 DUF1640: Protein of u 33.2 4.5E+02 0.0097 25.3 15.9 30 237-266 121-150 (177)
383 PF07989 Microtub_assoc: Micro 33.1 3E+02 0.0065 23.2 9.5 27 90-116 5-31 (75)
384 PRK13454 F0F1 ATP synthase sub 32.7 4.7E+02 0.01 25.3 12.9 20 200-219 108-127 (181)
385 PRK14472 F0F1 ATP synthase sub 32.6 4.5E+02 0.0097 25.1 12.5 9 210-218 105-113 (175)
386 PF00430 ATP-synt_B: ATP synth 32.6 3.5E+02 0.0076 23.9 9.5 16 202-217 89-104 (132)
387 PF09744 Jnk-SapK_ap_N: JNK_SA 32.6 4.6E+02 0.01 25.2 15.9 101 43-146 36-136 (158)
388 PLN03188 kinesin-12 family pro 32.6 1.2E+03 0.025 29.9 32.2 37 121-157 1108-1144(1320)
389 KOG4603 TBP-1 interacting prot 32.2 3.9E+02 0.0085 26.4 9.4 25 130-154 119-143 (201)
390 PF04728 LPP: Lipoprotein leuc 32.2 2.7E+02 0.0059 22.5 8.2 29 52-80 5-33 (56)
391 PRK11519 tyrosine kinase; Prov 31.7 9.1E+02 0.02 28.4 17.9 22 189-210 369-390 (719)
392 PF13166 AAA_13: AAA domain 31.2 8.8E+02 0.019 28.0 27.7 16 52-67 324-339 (712)
393 TIGR00219 mreC rod shape-deter 31.1 1.6E+02 0.0034 30.8 7.2 39 279-320 70-108 (283)
394 TIGR03545 conserved hypothetic 30.7 6.1E+02 0.013 29.2 12.4 144 190-357 164-311 (555)
395 PRK02119 hypothetical protein; 30.5 2.2E+02 0.0049 23.8 6.7 41 50-90 9-49 (73)
396 PRK05759 F0F1 ATP synthase sub 30.5 4.4E+02 0.0095 24.3 13.1 18 202-219 94-111 (156)
397 PRK07352 F0F1 ATP synthase sub 30.4 4.8E+02 0.01 24.8 13.4 21 200-220 107-127 (174)
398 PF04102 SlyX: SlyX; InterPro 30.2 2.2E+02 0.0048 23.4 6.6 36 55-90 9-44 (69)
399 COG4372 Uncharacterized protei 30.1 8.1E+02 0.018 27.3 32.2 57 38-94 69-125 (499)
400 PF04977 DivIC: Septum formati 30.1 2.4E+02 0.0052 22.7 6.9 29 47-75 21-49 (80)
401 PF13747 DUF4164: Domain of un 30.1 3.7E+02 0.008 23.3 11.6 47 123-169 35-81 (89)
402 PRK14154 heat shock protein Gr 29.7 6E+02 0.013 25.7 10.8 42 158-199 55-96 (208)
403 cd00176 SPEC Spectrin repeats, 29.7 4.4E+02 0.0096 24.2 22.2 133 183-320 40-177 (213)
404 PRK13453 F0F1 ATP synthase sub 29.5 5.1E+02 0.011 24.8 13.0 17 202-218 97-113 (173)
405 PF12795 MscS_porin: Mechanose 29.2 6E+02 0.013 25.5 26.3 77 278-356 153-229 (240)
406 TIGR01010 BexC_CtrB_KpsE polys 29.0 7.1E+02 0.015 26.3 18.6 32 36-67 170-201 (362)
407 KOG2991 Splicing regulator [RN 29.0 7E+02 0.015 26.2 23.6 24 313-336 281-304 (330)
408 KOG1772 Vacuolar H+-ATPase V1 28.7 2.3E+02 0.0051 25.7 6.8 93 293-385 10-105 (108)
409 PF02994 Transposase_22: L1 tr 28.7 1.6E+02 0.0036 31.8 7.1 42 126-167 143-184 (370)
410 COG2900 SlyX Uncharacterized p 28.6 3.6E+02 0.0077 22.9 7.4 52 61-112 5-56 (72)
411 PF09325 Vps5: Vps5 C terminal 28.6 5.6E+02 0.012 25.0 26.9 46 10-55 26-74 (236)
412 PRK14139 heat shock protein Gr 28.6 5.9E+02 0.013 25.2 10.8 39 158-196 35-73 (185)
413 PF05008 V-SNARE: Vesicle tran 28.5 3E+02 0.0066 22.5 7.3 23 74-96 28-50 (79)
414 COG1382 GimC Prefoldin, chaper 28.2 4.8E+02 0.011 24.1 13.2 38 129-166 72-109 (119)
415 PF07111 HCR: Alpha helical co 28.1 1.1E+03 0.024 28.2 50.1 102 256-360 530-639 (739)
416 PF04728 LPP: Lipoprotein leuc 28.1 3.2E+02 0.007 22.1 8.7 43 157-199 5-47 (56)
417 TIGR01010 BexC_CtrB_KpsE polys 28.0 7.4E+02 0.016 26.2 18.9 23 187-209 275-297 (362)
418 PF04871 Uso1_p115_C: Uso1 / p 28.0 5E+02 0.011 24.2 16.1 22 186-207 80-101 (136)
419 PRK14473 F0F1 ATP synthase sub 27.8 5.2E+02 0.011 24.3 13.3 20 200-219 85-104 (164)
420 PF14282 FlxA: FlxA-like prote 27.8 4.4E+02 0.0095 23.4 8.9 23 56-78 18-40 (106)
421 PF12126 DUF3583: Protein of u 27.7 4.7E+02 0.01 27.9 9.8 30 198-227 58-87 (324)
422 PF11570 E2R135: Coiled-coil r 27.7 5.3E+02 0.011 24.4 14.2 94 120-224 8-114 (136)
423 KOG0288 WD40 repeat protein Ti 27.7 9E+02 0.02 27.1 17.2 59 142-200 14-72 (459)
424 PF15188 CCDC-167: Coiled-coil 27.7 1.8E+02 0.0039 25.4 5.8 29 307-335 40-68 (85)
425 COG3937 Uncharacterized conser 27.7 2.3E+02 0.0049 25.8 6.6 11 4-14 24-34 (108)
426 TIGR01144 ATP_synt_b ATP synth 27.6 4.8E+02 0.01 23.9 11.3 72 158-229 29-101 (147)
427 TIGR02209 ftsL_broad cell divi 27.5 2E+02 0.0044 23.8 6.1 42 36-77 17-58 (85)
428 PF14257 DUF4349: Domain of un 27.4 1.6E+02 0.0035 29.8 6.5 56 264-338 128-183 (262)
429 PRK06231 F0F1 ATP synthase sub 27.2 6.3E+02 0.014 25.1 13.9 21 201-221 126-146 (205)
430 PF10205 KLRAQ: Predicted coil 27.2 4.7E+02 0.01 23.6 10.9 7 56-62 11-17 (102)
431 PRK14472 F0F1 ATP synthase sub 27.1 5.5E+02 0.012 24.4 13.1 21 200-220 106-126 (175)
432 PRK10869 recombination and rep 27.1 9.9E+02 0.021 27.3 26.4 24 297-320 335-358 (553)
433 PRK10803 tol-pal system protei 27.1 3.4E+02 0.0073 28.0 8.8 43 61-103 58-100 (263)
434 PF11172 DUF2959: Protein of u 27.0 6.6E+02 0.014 25.3 20.6 113 140-257 27-143 (201)
435 TIGR02338 gimC_beta prefoldin, 27.0 4.4E+02 0.0096 23.3 12.0 9 99-107 50-58 (110)
436 PRK04406 hypothetical protein; 26.8 3.8E+02 0.0082 22.6 7.5 33 53-85 14-46 (75)
437 PRK14155 heat shock protein Gr 26.8 5.1E+02 0.011 26.1 9.7 39 158-196 16-54 (208)
438 COG1566 EmrA Multidrug resista 26.6 8.5E+02 0.019 26.4 14.6 38 48-85 89-126 (352)
439 PF06120 Phage_HK97_TLTM: Tail 26.5 8.1E+02 0.018 26.1 19.5 26 178-203 143-168 (301)
440 PF00430 ATP-synt_B: ATP synth 26.4 4.5E+02 0.0098 23.2 10.0 21 199-219 75-95 (132)
441 PF07334 IFP_35_N: Interferon- 26.4 1E+02 0.0023 26.3 4.0 30 305-334 2-31 (76)
442 PRK06569 F0F1 ATP synthase sub 26.3 5.9E+02 0.013 24.5 14.0 32 191-222 52-83 (155)
443 PF10212 TTKRSYEDQ: Predicted 26.2 1E+03 0.022 27.3 21.8 27 42-68 301-327 (518)
444 PRK13460 F0F1 ATP synthase sub 26.0 5.8E+02 0.013 24.3 13.8 21 201-221 94-114 (173)
445 KOG4637 Adaptor for phosphoino 26.0 9.3E+02 0.02 26.7 16.6 45 163-207 147-191 (464)
446 PRK14148 heat shock protein Gr 25.8 1.7E+02 0.0037 29.2 6.1 38 157-194 42-79 (195)
447 PRK10476 multidrug resistance 25.8 7.9E+02 0.017 25.8 15.7 6 194-199 194-199 (346)
448 KOG0240 Kinesin (SMY1 subfamil 25.6 1.1E+03 0.024 27.4 15.9 124 39-164 417-540 (607)
449 PF04642 DUF601: Protein of un 25.6 3E+02 0.0065 28.7 7.8 83 247-329 196-278 (311)
450 PF05278 PEARLI-4: Arabidopsis 25.4 8.1E+02 0.018 25.8 15.8 46 101-146 209-254 (269)
451 PF10205 KLRAQ: Predicted coil 25.4 5.1E+02 0.011 23.4 11.0 61 297-357 13-73 (102)
452 cd07651 F-BAR_PombeCdc15_like 25.1 6.9E+02 0.015 24.9 21.2 29 217-245 166-194 (236)
453 KOG3433 Protein involved in me 25.0 7.1E+02 0.015 24.9 12.9 69 46-114 77-145 (203)
454 PRK15136 multidrug efflux syst 24.9 9E+02 0.019 26.1 16.9 20 252-271 156-175 (390)
455 smart00806 AIP3 Actin interact 24.9 1E+03 0.022 26.7 18.7 138 11-156 176-315 (426)
456 PF10224 DUF2205: Predicted co 24.7 4.5E+02 0.0098 22.6 7.9 42 91-132 22-63 (80)
457 PF05377 FlaC_arch: Flagella a 24.6 2.7E+02 0.0058 22.5 5.8 10 70-79 6-15 (55)
458 KOG4571 Activating transcripti 24.4 2.5E+02 0.0053 29.8 7.1 44 26-76 238-281 (294)
459 PRK10361 DNA recombination pro 24.4 1.1E+03 0.023 26.8 26.4 48 242-291 167-214 (475)
460 PRK15396 murein lipoprotein; P 24.3 4.5E+02 0.0097 22.5 7.5 43 157-199 27-69 (78)
461 PRK14161 heat shock protein Gr 24.1 6.9E+02 0.015 24.5 10.1 38 157-194 21-58 (178)
462 PRK14160 heat shock protein Gr 24.0 2.7E+02 0.0058 28.1 7.1 45 150-194 56-100 (211)
463 PRK14143 heat shock protein Gr 23.5 8.2E+02 0.018 25.1 11.3 39 158-196 70-108 (238)
464 PF15188 CCDC-167: Coiled-coil 22.8 3.5E+02 0.0077 23.6 6.7 62 126-192 4-66 (85)
465 KOG2391 Vacuolar sorting prote 22.7 6.2E+02 0.014 27.6 9.8 73 276-348 208-284 (365)
466 TIGR03319 YmdA_YtgF conserved 22.7 1.2E+03 0.025 26.6 23.0 16 377-392 241-256 (514)
467 PRK15396 murein lipoprotein; P 22.6 4.9E+02 0.011 22.3 7.5 34 63-96 31-64 (78)
468 PRK09174 F0F1 ATP synthase sub 22.6 7.7E+02 0.017 24.5 13.0 8 211-218 152-159 (204)
469 PHA01750 hypothetical protein 22.5 3.1E+02 0.0068 23.0 5.9 12 43-54 42-53 (75)
470 PF04899 MbeD_MobD: MbeD/MobD 22.5 4.7E+02 0.01 21.9 8.6 52 220-271 8-59 (70)
471 PRK13922 rod shape-determining 22.5 3.6E+02 0.0077 27.5 8.0 15 306-320 96-110 (276)
472 PF01920 Prefoldin_2: Prefoldi 22.4 4.8E+02 0.01 22.1 11.6 20 184-203 77-96 (106)
473 PF06705 SF-assemblin: SF-asse 22.2 8.2E+02 0.018 24.7 35.9 39 253-291 174-213 (247)
474 PRK10698 phage shock protein P 22.1 8.1E+02 0.018 24.6 25.7 72 162-233 106-184 (222)
475 CHL00118 atpG ATP synthase CF0 22.0 6.6E+02 0.014 23.5 13.0 82 143-224 48-134 (156)
476 PF05565 Sipho_Gp157: Siphovir 22.0 6.6E+02 0.014 23.9 9.2 77 199-282 6-82 (162)
477 PF13874 Nup54: Nucleoporin co 21.9 6.4E+02 0.014 23.4 8.9 94 45-138 32-125 (141)
478 PF10153 DUF2361: Uncharacteri 21.7 6.3E+02 0.014 23.1 8.9 67 8-74 21-99 (114)
479 cd07593 BAR_MUG137_fungi The B 21.7 8.4E+02 0.018 24.6 11.8 93 216-315 115-208 (215)
480 PRK14140 heat shock protein Gr 21.6 8.1E+02 0.017 24.4 10.7 99 141-239 23-135 (191)
481 PF06785 UPF0242: Uncharacteri 21.5 1.1E+03 0.023 25.8 19.8 157 83-242 69-229 (401)
482 PF10458 Val_tRNA-synt_C: Valy 21.5 4.1E+02 0.0089 21.4 6.6 66 54-119 1-66 (66)
483 cd07664 BAR_SNX2 The Bin/Amphi 21.5 8.7E+02 0.019 24.7 28.7 218 29-248 1-225 (234)
484 PF13094 CENP-Q: CENP-Q, a CEN 21.4 6.8E+02 0.015 23.4 9.5 63 59-121 22-84 (160)
485 PF14257 DUF4349: Domain of un 21.4 4.8E+02 0.01 26.4 8.6 62 53-114 128-191 (262)
486 KOG4809 Rab6 GTPase-interactin 21.3 1.3E+03 0.029 26.8 34.6 315 6-332 203-557 (654)
487 PRK00295 hypothetical protein; 21.2 4.7E+02 0.01 21.5 7.5 51 48-98 3-53 (68)
488 PRK14151 heat shock protein Gr 21.2 2.2E+02 0.0047 27.9 5.7 39 156-194 21-59 (176)
489 PF08606 Prp19: Prp19/Pso4-lik 21.2 5.1E+02 0.011 21.9 9.0 60 87-146 10-69 (70)
490 PF15294 Leu_zip: Leucine zipp 21.2 9.9E+02 0.021 25.2 23.2 209 62-277 6-245 (278)
491 PRK00736 hypothetical protein; 21.1 4.7E+02 0.01 21.5 6.9 52 40-91 2-53 (68)
492 PRK13460 F0F1 ATP synthase sub 21.0 7.3E+02 0.016 23.6 13.9 86 129-224 42-128 (173)
493 PF15358 TSKS: Testis-specific 21.0 6.4E+02 0.014 28.2 9.6 103 42-144 110-212 (558)
494 COG5283 Phage-related tail pro 20.9 1.8E+03 0.039 28.1 32.6 265 4-286 29-314 (1213)
495 PRK14473 F0F1 ATP synthase sub 20.9 7E+02 0.015 23.4 13.9 86 129-224 34-120 (164)
496 cd07627 BAR_Vps5p The Bin/Amph 20.9 8.2E+02 0.018 24.2 29.5 203 45-282 6-211 (216)
497 PF12711 Kinesin-relat_1: Kine 20.8 5.7E+02 0.012 22.3 8.6 65 199-291 22-86 (86)
498 PF10224 DUF2205: Predicted co 20.4 5.6E+02 0.012 22.1 8.0 52 56-107 15-66 (80)
499 TIGR01144 ATP_synt_b ATP synth 20.2 6.7E+02 0.014 22.9 13.0 82 143-224 21-107 (147)
500 PF11802 CENP-K: Centromere-as 20.2 1E+03 0.022 25.0 13.2 90 60-149 92-183 (268)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.87 E-value=2.6e-18 Score=207.27 Aligned_cols=312 Identities=24% Similarity=0.294 Sum_probs=289.7
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 37 SLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA 116 (545)
Q Consensus 37 SL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~ 116 (545)
....++.+++++..++.....-+..|..++..++.-++.|+...+.+..+++..+++.+.+.+.+..+...++.+.+.+.
T Consensus 1408 ~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e 1487 (1930)
T KOG0161|consen 1408 AKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLE 1487 (1930)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 042557 117 QALNNEKLAASSVQNLLE---EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIE 193 (545)
Q Consensus 117 el~ekEk~lsseIe~L~e---el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie 193 (545)
.+....+.++.+|.++.. ++++..++|+..+...+..+ .+|+.+|.+++++++-...+..+.+.++.+++.+++
T Consensus 1488 ~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~---~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~e 1564 (1930)
T KOG0161|consen 1488 ELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEK---EELQAALEELEAALEAEEDKKLRLQLELQQLRSEIE 1564 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 998888999999999998 77888889999988888888 899999999999999999988888888888888877
Q ss_pred H----------------------HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHh
Q 042557 194 D----------------------LRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKK 251 (545)
Q Consensus 194 ~----------------------Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~ 251 (545)
+ +++.| ++|+|.+ .++.+++++++.++++++.+++.+|....++++.+++
T Consensus 1565 r~l~ek~Ee~E~~rk~~~~~i~~~q~~L-e~E~r~k-------~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk 1636 (1930)
T KOG0161|consen 1565 RRLQEKDEEIEELRKNLQRQLESLQAEL-EAETRSK-------SEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKK 1636 (1930)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHH-------HHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHh
Confidence 7 55555 4777766 8899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042557 252 SEEENSSLEKEI-------NRLVNLLKETEEDACATKEEEAQLRDSL-------KEVEAEVIYMQETLGQARAESMKLKE 317 (545)
Q Consensus 252 ~eee~~~~~~e~-------~~l~e~l~~~E~~~~~~~~E~~~lr~~L-------k~ae~e~~ea~e~~~ea~~e~~~Lk~ 317 (545)
.+..+..++.++ ..+++++..+++++.++++|++.|+..+ ++++.++.++.+.++...+.|+.|..
T Consensus 1637 ~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~ 1716 (1930)
T KOG0161|consen 1637 LQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTA 1716 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhh
Confidence 999999998888 6899999999999999999999999999 88999999999999999999999999
Q ss_pred hHHhhHHHHHHHHHHHHH----HHhhHHHHHHhHHHHHHHHHHHHh
Q 042557 318 SFLDKETELQSVIQENEE----LRAREADSVKKVEELSSLLEEAMA 359 (545)
Q Consensus 318 ~l~dkE~eLq~i~~Ene~----Lr~~Ea~a~~~i~EL~~ll~ea~~ 359 (545)
...++|++|..+..++++ ++++++++++.+.++.++.++...
T Consensus 1717 ~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~ 1762 (1930)
T KOG0161|consen 1717 EKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRK 1762 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999998 999999999999999999987643
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.73 E-value=4.3e-19 Score=205.11 Aligned_cols=332 Identities=25% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 042557 17 VEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSE 96 (545)
Q Consensus 17 l~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~s 96 (545)
+..++.+++.++.......-...-++.+++++...|+..+..+..|.++...|+..++.|+..++.+...++.++++.+.
T Consensus 330 L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~ 409 (859)
T PF01576_consen 330 LQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARE 409 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444444444444444445555688899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 97 MAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLE---EKHKLINELENSREEEEKSKKAMESLASALHEVSVEARE 173 (545)
Q Consensus 97 lqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~e---el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~ee 173 (545)
+.++++.|+..++.+...+..+....+.+..+|.++.. ..++..++|+..+..++... +++..+|.+++..+..
T Consensus 410 ~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~---~El~~~leE~E~~l~~ 486 (859)
T PF01576_consen 410 LETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEK---EELQEQLEEAEDALEA 486 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888999999999976 56777899999999999888 8899999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHh
Q 042557 174 AKEKLLSSQTEHETYEAQIED----------------------LRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDES 231 (545)
Q Consensus 174 akekl~~~Q~Ele~~r~Eie~----------------------Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~ 231 (545)
......+++.+|.+++.++++ |++.| +.|.+++ .++.+++++++..++++
T Consensus 487 ~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~L-E~E~k~r-------~~~~r~kkKLE~~l~eL 558 (859)
T PF01576_consen 487 EEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAEL-EEERKER-------AEALREKKKLESDLNEL 558 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHH-HHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999877 67777 6777766 78899999999999999
Q ss_pred HHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHH
Q 042557 232 KISKAEWEQKELHLVDCVKKSEEENSSLEKEI-------NRLVNLLKETEEDACATKEEEAQLRDSL-------KEVEAE 297 (545)
Q Consensus 232 e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~-------~~l~e~l~~~E~~~~~~~~E~~~lr~~L-------k~ae~e 297 (545)
+..+++.+....+++++|++++..++.++.++ +.+...+..+++++..+..|++.++..+ +.++++
T Consensus 559 e~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~e 638 (859)
T PF01576_consen 559 EIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESE 638 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 4578889999999999999999999988 789999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHH----HHhhHHHHHHhHHHHHHHHHHHHh
Q 042557 298 VIYMQETLGQARAESMKLKESFLDKETELQSVIQENEE----LRAREADSVKKVEELSSLLEEAMA 359 (545)
Q Consensus 298 ~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~----Lr~~Ea~a~~~i~EL~~ll~ea~~ 359 (545)
+.++...++.+.+.++.|-..+..+|++++.+..++++ ++.+++++++.+..+.+|..+.+.
T Consensus 639 l~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~ 704 (859)
T PF01576_consen 639 LDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQ 704 (859)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 999999999999999999888755
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.50 E-value=1.6e-09 Score=128.19 Aligned_cols=314 Identities=18% Similarity=0.199 Sum_probs=162.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557 4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD 79 (545)
Q Consensus 4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~ 79 (545)
.|+.|.+.++..++..|+.|++.|++|..+.. +...+...++......+..+..++..+..++..+...+..+...
T Consensus 180 ~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 259 (1164)
T TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE 259 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999998775 55555555666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 80 LDESERKHSMAKNETSEMAKTVESLK-FELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAME 158 (545)
Q Consensus 80 leE~k~eL~~~ekEl~slqkelesLk-seLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~E 158 (545)
+..+...+......+..++..+..+. .++..+..++..+..+...+...+..+..++..+...+..+.....
T Consensus 260 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~------- 332 (1164)
T TIGR02169 260 ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID------- 332 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 66666666656555555555555533 3333333333333333333333333333333333333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 042557 159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEW 238 (545)
Q Consensus 159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~ 238 (545)
.+...+..+..+.......+...+..+..++.++..++..+...+..+. ....++..+...+..+..+.......
T Consensus 333 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~- 407 (1164)
T TIGR02169 333 KLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA----ETRDELKDYREKLEKLKREINELKRE- 407 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333333333333333333333333333333333333333332222221 22222333333333332222222222
Q ss_pred HhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 042557 239 EQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKES 318 (545)
Q Consensus 239 ~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~ 318 (545)
+..++.++..+..++..+...+...+.++..+..+...+...+..+...+......+..+......+...
T Consensus 408 ----------~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~ 477 (1164)
T TIGR02169 408 ----------LDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477 (1164)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2224444444444444444444444445555555555566666556666666666666666666666666
Q ss_pred HHhhHHHHHHHHHHHHHHHhh
Q 042557 319 FLDKETELQSVIQENEELRAR 339 (545)
Q Consensus 319 l~dkE~eLq~i~~Ene~Lr~~ 339 (545)
+......+..+..++..++..
T Consensus 478 l~~l~~~l~~l~~~~~~l~~~ 498 (1164)
T TIGR02169 478 YDRVEKELSKLQRELAEAEAQ 498 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655544
No 4
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.50 E-value=3.2e-10 Score=125.51 Aligned_cols=196 Identities=32% Similarity=0.365 Sum_probs=171.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 68 LLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSR 147 (545)
Q Consensus 68 ~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~ 147 (545)
.+...+.....+|++.+..|..+..+++.++..+.+|+.+|..++.++..+.+++......|.+|..+++++..+|+.+.
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 34445888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 042557 148 EEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEA 227 (545)
Q Consensus 148 ~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~ 227 (545)
....+.+..+.+|..+|+.+..++++++.....++.++..++.+++..++.+..++.||+.++.++..-..+....+..+
T Consensus 358 ~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~i 437 (522)
T PF05701_consen 358 AEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEI 437 (522)
T ss_pred hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888887
Q ss_pred HhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHH
Q 042557 228 KDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEIN 264 (545)
Q Consensus 228 ~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~ 264 (545)
+.-.+.....- ......-..|+.+-+++..|.....
T Consensus 438 k~l~e~~~~~~-~~~~~~~~~Vtls~eEy~~L~~ka~ 473 (522)
T PF05701_consen 438 KALSESESSSR-ASDSESSSKVTLSLEEYESLSKKAE 473 (522)
T ss_pred HHhhccccccc-ccccCCCCCeeecHHHHHHHHHHHH
Confidence 76333322211 1111133478888888877765553
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.49 E-value=2.1e-09 Score=126.58 Aligned_cols=146 Identities=21% Similarity=0.220 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557 4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD 79 (545)
Q Consensus 4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~ 79 (545)
.||.|++.|+..++..|+.|+++|++|..+.. +...+...++..+...+..+...+..+...+..+...+..+...
T Consensus 182 ~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1179)
T TIGR02168 182 ERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAE 261 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999998887 55666666777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 80 LDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREE 149 (545)
Q Consensus 80 leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~e 149 (545)
+..++..+......+..++..+..+...+..+...+..+..+...+...+..+...+..+..++..+...
T Consensus 262 ~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 331 (1179)
T TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666666666666666666666666665555444444444444444444444444444444333
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.37 E-value=3.3e-08 Score=117.07 Aligned_cols=198 Identities=18% Similarity=0.191 Sum_probs=141.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557 4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD 79 (545)
Q Consensus 4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~ 79 (545)
.++.+.+.+++.++..|+.+.+.+.+|..+.. ..+..+...+..+...+..+..++..++.++..+...+..+...
T Consensus 187 ~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~ 266 (1164)
T TIGR02169 187 ERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKR 266 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999877 56667777888888888889999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 80 LDESERKHSMAKNETSEMA-KTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAME 158 (545)
Q Consensus 80 leE~k~eL~~~ekEl~slq-kelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~E 158 (545)
+......+...+..+..+. ..+..+..++..+...+..+..+...+...+..+..++..+..++..+....+.....+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~ 346 (1164)
T TIGR02169 267 LEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346 (1164)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777744 455555555555555555555555555666666666666666666666555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042557 159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKA 201 (545)
Q Consensus 159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~ 201 (545)
.+...+..+...+..+...+...+..+..++.++..+...+..
T Consensus 347 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 389 (1164)
T TIGR02169 347 EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555565666665555555555555555555555544444433
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.35 E-value=5.6e-08 Score=116.87 Aligned_cols=306 Identities=23% Similarity=0.287 Sum_probs=169.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557 4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD 79 (545)
Q Consensus 4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~ 79 (545)
.|+.|++.|+++++..|+.|++.|.+|..+.. +...++...|..++..+..+...+..++..+..+...+......
T Consensus 189 ~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 268 (1163)
T COG1196 189 ERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKE 268 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999998 78888888888888888888888888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 80 LDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMES 159 (545)
Q Consensus 80 leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~Ee 159 (545)
+..++..+..+...+..++..+..+...+..+..++..+..+...+...+..+......+...+......++........
T Consensus 269 i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 348 (1163)
T COG1196 269 IEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 77777777777777666666666666666665555554444444444444444444444444444333333332211112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 042557 160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWE 239 (545)
Q Consensus 160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~ 239 (545)
+...+..+.....+...... .+...+...-..++..+.. +....+.+.
T Consensus 349 ~~~~~~~~~~~~~e~~~~~~--------------~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 396 (1163)
T COG1196 349 LEQLLAELEEAKEELEEKLS--------------ALLEELEELFEALREELAE------------------LEAELAEIR 396 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHhhhHHHHHHHHHHHHHH------------------HHHHHHHHH
Confidence 22111111111111111111 0000000000111111111 111111122
Q ss_pred hhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 042557 240 QKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESF 319 (545)
Q Consensus 240 ~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l 319 (545)
..=..+-.+|..++..+..+...+..+...+...+.+...+..+.+.++..+..+...+..+..++..+......+...+
T Consensus 397 ~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1163)
T COG1196 397 NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEEL 476 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21112222333344444444445555555555444444455555555566666666666666666666666666666667
Q ss_pred HhhHHHHHHHHHHHHHHHhhHH
Q 042557 320 LDKETELQSVIQENEELRAREA 341 (545)
Q Consensus 320 ~dkE~eLq~i~~Ene~Lr~~Ea 341 (545)
.+....++.+...++.|.....
T Consensus 477 ~~~~~~l~~~~~~~~~l~~~~~ 498 (1163)
T COG1196 477 QRLEKELSSLEARLDRLEAEQR 498 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777666666554433
No 8
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.27 E-value=1e-06 Score=97.95 Aligned_cols=361 Identities=24% Similarity=0.301 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHhhhhhhHHHHHHHHHHH-------HHHHHHHHHHH-----H
Q 042557 14 KIRVEELEMQAEEAHKLKRSAS-------ESLDAVMRQLEGNNDKLHDAESEIAAL-------KEKVGLLEMTI-----G 74 (545)
Q Consensus 14 kkql~sLE~QAeKA~ky~elk~-------lSL~l~t~eLE~lk~~LeeaesEI~~L-------qeKve~LE~ev-----~ 74 (545)
..++..++.++.++++....+. ..|..+..-+++++.+|+.+...-..- +-+...++..+ .
T Consensus 33 e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~ 112 (522)
T PF05701_consen 33 ETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASV 112 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchH
Confidence 3344444444444444444444 666677777777777776655432221 11223333322 2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 75 RQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE-------KLAASSVQNLLEEKHKLINELENSR 147 (545)
Q Consensus 75 ~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE-------k~lsseIe~L~eel~kl~~ELE~~~ 147 (545)
.|+.+++-.+.++..+-.++.....+|..++.++..+-.....+..+- ......+..|+.++..+...|+...
T Consensus 113 ~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~ 192 (522)
T PF05701_consen 113 AWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAK 192 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 266677777777777777777777777777777777766533333333 2233344455555555555555442
Q ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHH-HH------
Q 042557 148 EEEEKSK-----------KAMESLASALHEVSVEAREAKEKLL---SSQTEHETYEAQIEDLRIVLKATNE-KY------ 206 (545)
Q Consensus 148 ~eeEkek-----------ka~EeLa~AL~E~e~E~eeakekl~---~~Q~Ele~~r~Eie~Lq~~L~~aE~-k~------ 206 (545)
..-.... .....+...|.+....+..++..+. .++..+.....++..|+.-|..+.. ++
T Consensus 193 ~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~ 272 (522)
T PF05701_consen 193 LAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEA 272 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 2110000 1113344445555555555554442 2224444445555555555544443 11
Q ss_pred ---------------------HHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHH
Q 042557 207 ---------------------ESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINR 265 (545)
Q Consensus 207 ---------------------~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~ 265 (545)
+..|..++.++.+++..++.++.+++..+.+-.. +-.......-.+.+|..++++
T Consensus 273 ~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~----lke~e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 273 KEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELER----LKEREKEASSEVSSLEAELNK 348 (522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHhhHHHHHHH
Confidence 1223344444555555555555555555442211 000111233333344444444
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557 266 LVNLLKETEEDACATKEEEAQLRDSLKEV-------EAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRA 338 (545)
Q Consensus 266 l~e~l~~~E~~~~~~~~E~~~lr~~Lk~a-------e~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~ 338 (545)
++..|..+...-.-.++....|-..|.++ ..++..++..+..++.+.-..+..+...|..|+.+..+.+..|.
T Consensus 349 ~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKa 428 (522)
T PF05701_consen 349 TRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKA 428 (522)
T ss_pred HHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333222222233333333344444 44444455555566777788888899999999999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhccccccCcccccccccccc
Q 042557 339 READSVKKVEELSSLLEEAMAKKQTAENGELTDSEKDYDLL 379 (545)
Q Consensus 339 ~Ea~a~~~i~EL~~ll~ea~~~~~~~~~~~~~~~~~~~~~~ 379 (545)
+|+.|...|+-|+.--..+.... ...+|.+|-|-..|..|
T Consensus 429 sEa~Ala~ik~l~e~~~~~~~~~-~~~~~~Vtls~eEy~~L 468 (522)
T PF05701_consen 429 SEALALAEIKALSESESSSRASD-SESSSKVTLSLEEYESL 468 (522)
T ss_pred HHHHHHHHHHHhhcccccccccc-cCCCCCeeecHHHHHHH
Confidence 99999988887765544332211 12556677776666433
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=99.25 E-value=1.9e-06 Score=100.63 Aligned_cols=210 Identities=19% Similarity=0.229 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 125 AASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNE 204 (545)
Q Consensus 125 lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~ 204 (545)
+...+..+..++..+...+......+...+..++++..+|.++.....+....+..++.+++.++..+..++..+...+.
T Consensus 361 l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~ 440 (880)
T PRK02224 361 LREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARE 440 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444434444555555555555555555555555554433332
Q ss_pred HHHHhH---Hh-----------------HHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHH-----
Q 042557 205 KYESML---DD-----------------AKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSL----- 259 (545)
Q Consensus 205 k~~~~l---~e-----------------a~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~----- 259 (545)
-+..+- .+ ...+.....+.+...+.+++.....|+. ..+-++.+...+.++..+
T Consensus 441 ~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~-~~e~l~~~~~~~~~l~~l~~~~~ 519 (880)
T PRK02224 441 RVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEE-RLERAEDLVEAEDRIERLEERRE 519 (880)
T ss_pred HHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 00 0012233334444456666777777776 444444554444444444
Q ss_pred --HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557 260 --EKEINRLVNLLKETEEDACATKEEEAQLRDSL-------KEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI 330 (545)
Q Consensus 260 --~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L-------k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~ 330 (545)
...++...+.+..++.++..+..+.+.|+..+ ..++++..++...+..+...+..|...+..++ ++..+.
T Consensus 520 ~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~ 598 (880)
T PRK02224 520 DLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLL 598 (880)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 44455667777788888888999999888888 33455555555666666666666666666665 455555
Q ss_pred HHHHHH
Q 042557 331 QENEEL 336 (545)
Q Consensus 331 ~Ene~L 336 (545)
.++..+
T Consensus 599 ~~i~~~ 604 (880)
T PRK02224 599 AAIADA 604 (880)
T ss_pred HHHHHH
Confidence 554443
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.15 E-value=2.4e-06 Score=101.00 Aligned_cols=195 Identities=21% Similarity=0.278 Sum_probs=143.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 042557 5 YARNLVEEWKIRVEELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADL 80 (545)
Q Consensus 5 RV~DLl~Evkkql~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~l 80 (545)
.+...+...++++..++...+...+|..+.. ..+..+..++..+...+..+...+..+...+..+...+..++..+
T Consensus 190 el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (1179)
T TIGR02168 190 RLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL 269 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888888777 555666778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 81 DESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESL 160 (545)
Q Consensus 81 eE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeL 160 (545)
..+...+...+..+..++..+..+...+......+..+..+...+...+..+..++..+..++..+...+......+..+
T Consensus 270 ~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (1179)
T TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888777777777777777777777777777777777776666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557 161 ASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 161 a~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
...+..+...+......+..+...+..++.++..++..+
T Consensus 350 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (1179)
T TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665555555555444444444444444433
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=99.13 E-value=1.9e-05 Score=92.37 Aligned_cols=201 Identities=22% Similarity=0.263 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHhHHHHHHHHHHHHHHH
Q 042557 151 EKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATN---EKYESMLDDAKHEIGLLTNIIKEA 227 (545)
Q Consensus 151 Ekekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE---~k~~~~l~ea~~e~~~lkk~~E~~ 227 (545)
.........+...+..+..++..+...+...+..+..++.++..+...|.++. ..|...|.++..++..+...+..+
T Consensus 352 ~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~ 431 (880)
T PRK02224 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444455555556666666666666666666666666665433 244455555555555555444333
Q ss_pred Hh---HhHHHHHHHHh--hhh---------------h----HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 042557 228 KD---ESKISKAEWEQ--KEL---------------H----LVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEE 283 (545)
Q Consensus 228 ~~---E~e~s~~~~~~--kE~---------------~----~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E 283 (545)
.+ .+..++..... .+. + +...|+....++..+..+++.+...+...+..... ..+
T Consensus 432 ~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~-~~~ 510 (880)
T PRK02224 432 EATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA-EDR 510 (880)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 33 22222222220 001 1 23444455555555555554444433333332111 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 042557 284 EAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSS 352 (545)
Q Consensus 284 ~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ 352 (545)
...|+..+..++..+......++.+......|...+.+++.+++......+.++..-..+...+.++..
T Consensus 511 l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (880)
T PRK02224 511 IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS 579 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444333333333333333
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=1e-05 Score=98.64 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHH--HHHhhHHHHHHhHHHHH
Q 042557 293 EVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENE--ELRAREADSVKKVEELS 351 (545)
Q Consensus 293 ~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene--~Lr~~Ea~a~~~i~EL~ 351 (545)
....+...+...++.+.+..+.+...+..+++.++.+..+++ ..+.++.++++.+-++.
T Consensus 1051 ~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka~i~~~ 1111 (1311)
T TIGR00606 1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMR 1111 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHH
Confidence 357888888999999999999999999999999999999995 48999999888776664
No 13
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.03 E-value=2.3e-05 Score=86.82 Aligned_cols=88 Identities=18% Similarity=0.266 Sum_probs=60.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557 201 ATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACAT 280 (545)
Q Consensus 201 ~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~ 280 (545)
....+.-..|-.|+.+..-++..+.....++......|..--..|...+.....++..|..++.++-+.|...-.+++.+
T Consensus 318 ~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL 397 (546)
T PF07888_consen 318 NVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKL 397 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777888888888888888888888888875555555566666777777777777777777665555555
Q ss_pred HHHHHHHH
Q 042557 281 KEEEAQLR 288 (545)
Q Consensus 281 ~~E~~~lr 288 (545)
.-+..+.+
T Consensus 398 ~~ql~ke~ 405 (546)
T PF07888_consen 398 EKQLGKEK 405 (546)
T ss_pred HHHHHHhh
Confidence 55554444
No 14
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.98 E-value=1.3e-05 Score=98.27 Aligned_cols=334 Identities=14% Similarity=0.108 Sum_probs=198.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSAS------ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQK 77 (545)
Q Consensus 4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~------lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le 77 (545)
.|+.|++.|+..++..|+.|+++|.+|..+.. ..+..+...++.+...++.....+..++.++..+...+..++
T Consensus 310 ~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelE 389 (1486)
T PRK04863 310 VEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAE 389 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999876 445555566666666666666666666666666666666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 78 ADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE----------KAQALNNEKLAASSVQNLLEEKHKLINELENSR 147 (545)
Q Consensus 78 ~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee----------l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~ 147 (545)
..+..++..+......+..++..+..+...+..+..- ...|..........+..++.++..+.+++..+.
T Consensus 390 eeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~le 469 (1486)
T PRK04863 390 EEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQ 469 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666655555444 223333334444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 042557 148 EEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIE---DLRIVLKATNEKYESMLDDAKHEIGLLTNII 224 (545)
Q Consensus 148 ~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie---~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~ 224 (545)
......++++..+....-.+ ....+..+.-.+-..+...+..+. .++..|.+.+-+++. ...+
T Consensus 470 a~leql~~~~~~l~~~~Gkv--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------q~~~ 535 (1486)
T PRK04863 470 AAHSQFEQAYQLVRKIAGEV--SRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQ------------QQRA 535 (1486)
T ss_pred HHHHHHHHHHHHHHHHcCCc--CHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH------------HHHH
Confidence 44444444433333222221 222333333333333334444333 366777777766551 2233
Q ss_pred HHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHH
Q 042557 225 KEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEV---EAEVIYM 301 (545)
Q Consensus 225 E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~a---e~e~~ea 301 (545)
+++..++......--..+..|....-..+..+..+..+...+.+... .++...++|...+.++ -+.-..+
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~qL~~~i~~l~~~ap~W~~a 608 (1486)
T PRK04863 536 ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRM-------ALRQQLEQLQARIQRLAARAPAWLAA 608 (1486)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhChHHHhh
Confidence 34444443321111112333333333444444444444444444444 4555555555555433 3456678
Q ss_pred HHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Q 042557 302 QETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAM 358 (545)
Q Consensus 302 ~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~ 358 (545)
++++.-++.++-.+-++-...-..+|.+....-+++.........+.-|...++.-+
T Consensus 609 ~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~ 665 (1486)
T PRK04863 609 QDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLS 665 (1486)
T ss_pred HHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888888888888888888888899888888888888888888888888877543
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.95 E-value=0.00011 Score=91.21 Aligned_cols=152 Identities=20% Similarity=0.250 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 125 AASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNE 204 (545)
Q Consensus 125 lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~ 204 (545)
+......|..-.+++..+++.+.-.++....+...|...+..+..-+.+.+.....++.+++....+...+...+.....
T Consensus 1398 ~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~ 1477 (1930)
T KOG0161|consen 1398 ANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKN 1477 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33334444445566666667776667777777777777778888888889999999999999999999998888888888
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 205 KYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDA 277 (545)
Q Consensus 205 k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~ 277 (545)
.|+.+++ .-.++.+..+.+.+.+.++..+...-+++-.++.+..+.++.++..+|..+..+.+.+...|...
T Consensus 1478 ~lee~~e-~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~ 1549 (1930)
T KOG0161|consen 1478 ALEELLE-QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKK 1549 (1930)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 8888777 56788999999999999999999999999999999999999999999999987777666555443
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.94 E-value=3.3e-05 Score=89.14 Aligned_cols=284 Identities=20% Similarity=0.248 Sum_probs=209.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557 43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE 122 (545)
Q Consensus 43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE 122 (545)
..++.+...|.....++..++.++..+..+.......|+-++..|...+....-++.+|+.|+.+|+.....+......-
T Consensus 287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 287 SKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999888877666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHH
Q 042557 123 KLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLL---------SSQTEHETYEAQIE 193 (545)
Q Consensus 123 k~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~---------~~Q~Ele~~r~Eie 193 (545)
..+..+...+..++..+...++.....+....+.++.|...|.+-...+...+.++. .+...++.+..+.+
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eke 446 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKE 446 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777788888888888887778888888887 66677777777777
Q ss_pred HHHHHHHHH----HHHHHHhHHhHHHHHHHHHHHHHHHHhHhH---HHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHH
Q 042557 194 DLRIVLKAT----NEKYESMLDDAKHEIGLLTNIIKEAKDESK---ISKAEWEQKELHLVDCVKKSEEENSSLEKEINRL 266 (545)
Q Consensus 194 ~Lq~~L~~a----E~k~~~~l~ea~~e~~~lkk~~E~~~~E~e---~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l 266 (545)
+++..|... +..+...++--..++..++-+++.+..++. .++..+...-..+....-+..-++..+.-++...
T Consensus 447 r~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~ 526 (775)
T PF10174_consen 447 RLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKK 526 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHh
Confidence 777776544 222223444444555555555555544432 2333444444444444445566666666666666
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHH
Q 042557 267 VNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQ 327 (545)
Q Consensus 267 ~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq 327 (545)
.+-....+++++.++.. .+++.-+..++.++......++-+++++-+|-..|.+.|++=-
T Consensus 527 rek~~kl~~ql~k~~~~-~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~ 586 (775)
T PF10174_consen 527 REKHEKLEKQLEKLRAN-AELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKN 586 (775)
T ss_pred hhHHHHHHHHHHHHHhC-HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666664443 4667777788888888888888888888888887776666533
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.91 E-value=0.00015 Score=83.81 Aligned_cols=103 Identities=25% Similarity=0.372 Sum_probs=65.1
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----------HH------------HHHH---
Q 042557 247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEV-----------EA------------EVIY--- 300 (545)
Q Consensus 247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~a-----------e~------------e~~e--- 300 (545)
.-|...-++....+.++++|+.-|..+|.+-...-.+...|-..|+.+ ++ .+.+
T Consensus 555 ~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~elleea~R 634 (775)
T PF10174_consen 555 QEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAELLEEALR 634 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhHHHHHHHh
Confidence 334455567777788999999999999999888877777777765221 10 0000
Q ss_pred ------HHHHHHH-------HHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHH
Q 042557 301 ------MQETLGQ-------ARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEE 349 (545)
Q Consensus 301 ------a~e~~~e-------a~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~E 349 (545)
+...+.. ....+..+.-.+.++.++|..+++|++.|+..=+..+....+
T Consensus 635 ee~~~t~e~~l~~s~q~~~~~~~~~~~~e~qleeL~~~l~k~~~Eld~l~~qL~ssq~~L~e 696 (775)
T PF10174_consen 635 EEVSITEERELAQSQQKLAQQEAQSSHLEKQLEELEAALEKLRQELDQLKAQLESSQQSLME 696 (775)
T ss_pred hhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0001111 112233344578899999999999999988665555554433
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.88 E-value=0.00015 Score=87.72 Aligned_cols=97 Identities=20% Similarity=0.299 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 042557 20 LEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAK 99 (545)
Q Consensus 20 LE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqk 99 (545)
|..++.....-.......+..+...+..+...+.++...+..+..++..+...+..+...+..+...+.....++..+..
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 751 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042557 100 TVESLKFELETVKEEKA 116 (545)
Q Consensus 100 elesLkseLe~~eeel~ 116 (545)
.+..+..++..+++.+.
T Consensus 752 ~~~~~~~~~~~~~~~l~ 768 (1163)
T COG1196 752 ELEELQERLEELEEELE 768 (1163)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 19
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.75 E-value=0.00018 Score=74.37 Aligned_cols=134 Identities=18% Similarity=0.225 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 042557 50 DKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKH-SMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASS 128 (545)
Q Consensus 50 ~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL-~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsse 128 (545)
..|..+|...+.-=++|+.|+.+...|..+|..+.... .....--..+..+|..++..|..+..+...+.-....+..+
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e 83 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE 83 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence 45666666677777777777777777777777666653 22333345577777777777777777766666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 042557 129 VQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQT 183 (545)
Q Consensus 129 Ie~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~ 183 (545)
+..+..++.........+...+...++.+++...+.-.++..+..++..+..++.
T Consensus 84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 84 LEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666665555443
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.75 E-value=0.00074 Score=75.09 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557 284 EAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI 330 (545)
Q Consensus 284 ~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~ 330 (545)
+.+.|..|....+.+..++.--+.+..++..|..-+..+|..|..+.
T Consensus 412 lsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 412 LSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555556666676777777888888888888888887773
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=98.70 E-value=0.0019 Score=75.51 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHH
Q 042557 286 QLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQS 328 (545)
Q Consensus 286 ~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~ 328 (545)
.++..+..+...+......++.+......|...+.+.+..+..
T Consensus 663 ~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~ 705 (880)
T PRK03918 663 ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444443333
No 22
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.63 E-value=0.0024 Score=78.77 Aligned_cols=307 Identities=21% Similarity=0.280 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHh-------hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 042557 14 KIRVEELEMQAEEAHKLKRSASE-------SLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERK 86 (545)
Q Consensus 14 kkql~sLE~QAeKA~ky~elk~l-------SL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~e 86 (545)
..+++-|+.+++ .|..-+.. .+..+..++..++..|.....+..--.++.+.|...| +-.+.+
T Consensus 635 e~~l~qLe~~le---~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~i-------e~~K~e 704 (1822)
T KOG4674|consen 635 EKRLRQLENELE---SYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNL-------ELTKEE 704 (1822)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 445555555554 34333333 3444444444444444444444444444444444444 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 87 HSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHE 166 (545)
Q Consensus 87 L~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E 166 (545)
+..+......++..|.+....+..+.+++..+......+..++.+|+.+..-+.+--.++....++.-.....|..-|..
T Consensus 705 ~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~ 784 (1822)
T KOG4674|consen 705 VETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDN 784 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455556666666666666666666666666677777777777766666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHH
Q 042557 167 VSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLV 246 (545)
Q Consensus 167 ~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~ 246 (545)
+.+-......-....+. .+...+..|...|..+..+++.+- .++..+...+......+-+..+.-...-..+.
T Consensus 785 lQt~~~~~e~s~~~~k~---~~e~~i~eL~~el~~lk~klq~~~----~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~ 857 (1822)
T KOG4674|consen 785 LQTQKNELEESEMATKD---KCESRIKELERELQKLKKKLQEKS----SDLRELTNSLEKQLENAQNLVDELESELKSLL 857 (1822)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 65544444433333322 234566666666655555544333 33444555555555555555665555555555
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHh
Q 042557 247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATK-----EEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLD 321 (545)
Q Consensus 247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~-----~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~d 321 (545)
..++..+..+..+..++..|-..++-...+...+. .+...+-+.|+....++......+.-+..+..++++...-
T Consensus 858 ~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s 937 (1822)
T KOG4674|consen 858 TSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSS 937 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666665555444 3556666778888888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 042557 322 KETELQSVIQENEELR 337 (545)
Q Consensus 322 kE~eLq~i~~Ene~Lr 337 (545)
.|+.|..+...++++|
T Consensus 938 ~eqsl~~~ks~lde~~ 953 (1822)
T KOG4674|consen 938 LEQSLESVKSELDETR 953 (1822)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999965
No 23
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=0.0066 Score=74.68 Aligned_cols=196 Identities=15% Similarity=0.147 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHH
Q 042557 158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAE 237 (545)
Q Consensus 158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~ 237 (545)
..|...|.++..++.+....+..+..++..+..++..++..+.......+..+..+..++..+...+.++..-......-
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y 963 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENK 963 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555556666666666665544433333221
Q ss_pred HHh-hhhhHH---HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 042557 238 WEQ-KELHLV---DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEV--EAEVIYMQETLGQARAE 311 (545)
Q Consensus 238 ~~~-kE~~~~---~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~a--e~e~~ea~e~~~ea~~e 311 (545)
-.. ....+- ..+..+...+..++.++..+...+......+..+......++++|... ..++......+..+..+
T Consensus 964 ~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~ 1043 (1311)
T TIGR00606 964 IQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKE 1043 (1311)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 011111 122233566677777778888888888888888888888888888555 88888888888888887
Q ss_pred HHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 042557 312 SMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLE 355 (545)
Q Consensus 312 ~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ 355 (545)
++.+ .......++..+..++..|...-+.....+..|-.-+.
T Consensus 1044 ~~~~--~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~ 1085 (1311)
T TIGR00606 1044 MGQM--QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIK 1085 (1311)
T ss_pred Hhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766 34666666777777777777666666555555544444
No 24
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.56 E-value=0.0026 Score=78.57 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=56.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 042557 3 ESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDE 82 (545)
Q Consensus 3 e~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE 82 (545)
++|+.+|..+|.+-.+.|+......+.+.......+.-+...++.+...+..+...+..++..+..++..+..+...|..
T Consensus 804 e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~ 883 (1822)
T KOG4674|consen 804 ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKS 883 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999888888888877777776766666666666555555555555555544444444444433
Q ss_pred H
Q 042557 83 S 83 (545)
Q Consensus 83 ~ 83 (545)
.
T Consensus 884 ~ 884 (1822)
T KOG4674|consen 884 A 884 (1822)
T ss_pred h
Confidence 3
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.56 E-value=0.00013 Score=73.25 Aligned_cols=213 Identities=19% Similarity=0.243 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557 103 SLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQ 182 (545)
Q Consensus 103 sLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q 182 (545)
.+...+..+...+..+..+...+..++..|..++..+..+|+.+..++......++.+...+.+.....+.+..+....-
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~e 91 (237)
T PF00261_consen 12 EAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDE 91 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33333333333333333344444444555555555555555555444444444445555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHH
Q 042557 183 TEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKE 262 (545)
Q Consensus 183 ~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e 262 (545)
..++.+..++......+.+++.||.. +..-+.. ++. +++.+ ..+--.+-.+|+.++.++..+..
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E----~~rkl~~----~E~---~Le~a----EeR~e~~E~ki~eLE~el~~~~~- 155 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEE----VERKLKV----LEQ---ELERA----EERAEAAESKIKELEEELKSVGN- 155 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHH----CHHHHHH----HHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHH---HHHHH----HHHHhhhchhHHHHHHHHHHHHH-
Confidence 56666667777777777777777662 2111111 222 22222 22222222234444444444444
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHH
Q 042557 263 INRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELR 337 (545)
Q Consensus 263 ~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr 337 (545)
+|+..|....-...-...+...++.+...+.+|.-+++.|...+..|...+.++|.+|......+..++
T Consensus 156 ------~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 156 ------NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333333344444455555556666666666666666666666777777777777776666665543
No 26
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.53 E-value=0.004 Score=70.15 Aligned_cols=328 Identities=16% Similarity=0.169 Sum_probs=172.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH------
Q 042557 3 ESYARNLVEEWKIRVEELEMQAEEAHKLK-----RSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEM------ 71 (545)
Q Consensus 3 e~RV~DLl~Evkkql~sLE~QAeKA~ky~-----elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~------ 71 (545)
+|-|..+-.|.-.++-+||+.+..+-+-+ +.+++--.++..- +++.|.+-...|+.|...-+.|-+
T Consensus 397 ~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l---~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs 473 (961)
T KOG4673|consen 397 ESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAAL---LKDELAEKDEIINQLMAEGEKLSKKQLAQS 473 (961)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34555566666667777776665544332 2222222222222 224555555555555544444333
Q ss_pred -HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 72 -TIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEE 150 (545)
Q Consensus 72 -ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~ee 150 (545)
.|..|.+++.+....+...-+.+..++.+.+.|+.-+...++--..+.+.-++...++..-...+..+...++.+..+.
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~ 553 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQA 553 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4445555554443334444445566666666666666555444222333333333333333333222222222222222
Q ss_pred HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042557 151 EKSKKAMESLASAL---------------HEVSVEAREAKEKLLSSQTE----HETYEAQIEDLRIVLKATNEKYESMLD 211 (545)
Q Consensus 151 Ekekka~EeLa~AL---------------~E~e~E~eeakekl~~~Q~E----le~~r~Eie~Lq~~L~~aE~k~~~~l~ 211 (545)
-.+..+++++...| ..+-..+..++..+...... =+.+|.++..|+..|.+||-|.+...-
T Consensus 554 ~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q 633 (961)
T KOG4673|consen 554 LAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQ 633 (961)
T ss_pred HHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111111111 11111222222222222111 146799999999999999999997766
Q ss_pred hHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHH----H---HHHHHHHHHHHHHhhhHHHH
Q 042557 212 DAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEI----N---RLVNLLKETEEDACATKEEE 284 (545)
Q Consensus 212 ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~----~---~l~e~l~~~E~~~~~~~~E~ 284 (545)
+.-.-..-|-..+|.+..=+-...++|++-|..+...+--++-.+..+...- . .+.=+|-..+-.+..+++|+
T Consensus 634 ~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~ 713 (961)
T KOG4673|consen 634 QVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQ 713 (961)
T ss_pred hccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 6544444556667777777777889999999998766665555444433322 1 11222333445556788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHH
Q 042557 285 AQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQEN 333 (545)
Q Consensus 285 ~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~En 333 (545)
..|+..|...-+-+++.......+..+...|++...-.|.+.+-.....
T Consensus 714 ~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 714 GQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888666666666666666666666777777666666665555443
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.51 E-value=0.0022 Score=66.31 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHH
Q 042557 284 EAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQS 328 (545)
Q Consensus 284 ~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~ 328 (545)
...+...+...+.++..+...+...-.+...|-+.++.++.++.+
T Consensus 257 ~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIat 301 (312)
T PF00038_consen 257 REEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIAT 301 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444444445555555555544444555555555555555444
No 28
>PRK01156 chromosome segregation protein; Provisional
Probab=98.51 E-value=0.0066 Score=71.60 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042557 10 VEEWKIRVEELEMQAEEAH 28 (545)
Q Consensus 10 l~Evkkql~sLE~QAeKA~ 28 (545)
+..++..+..|+.++....
T Consensus 307 l~~l~~~l~~l~~~l~~~e 325 (895)
T PRK01156 307 IENKKQILSNIDAEINKYH 325 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 29
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.39 E-value=0.00084 Score=67.54 Aligned_cols=139 Identities=20% Similarity=0.323 Sum_probs=66.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 40 AVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQAL 119 (545)
Q Consensus 40 l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ 119 (545)
.+...|......+..+..++..|+.++..++..+......|..+...|..+++........+..|.
T Consensus 19 ~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE-------------- 84 (237)
T PF00261_consen 19 EAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE-------------- 84 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 334455555555556666666666666666555555555555555555444444433333333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557 120 NNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 120 ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
.......+++..+...|..+....+.....+++....|.-++..+..+..++......+..+..++..+...|
T Consensus 85 -------~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 85 -------NREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp -------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444555555555555544444444444444444444333
No 30
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.35 E-value=0.00094 Score=74.30 Aligned_cols=230 Identities=19% Similarity=0.220 Sum_probs=142.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042557 42 MRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNN 121 (545)
Q Consensus 42 t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ek 121 (545)
-.++-.+...+.++....+.++.. +..+..++++++..+..+++.....+..+..+...|..++.+...++.+
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~e-------i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr 163 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIE-------ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRR 163 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 334444444444555554444444 4444555555555555555555566666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 042557 122 EKLAASSVQNLLEEKHKLINELENSREEEEKSKK-----------AMESLASALHEVSVEAREAKEKLLSSQTEHETYEA 190 (545)
Q Consensus 122 Ek~lsseIe~L~eel~kl~~ELE~~~~eeEkekk-----------a~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~ 190 (545)
.+.+.+++..|..+..++..+|..++.+++.+.- .+++|.......+.++.+.+..+..--. ...+.
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~ 241 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNRE 241 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchH
Confidence 6777777777777777777777777766555543 3344444444445555555544433221 22233
Q ss_pred HHH-HHHHHHHHHHHHHHHhHHhHHHHHHHHH-HHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHH
Q 042557 191 QIE-DLRIVLKATNEKYESMLDDAKHEIGLLT-NIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVN 268 (545)
Q Consensus 191 Eie-~Lq~~L~~aE~k~~~~l~ea~~e~~~lk-k~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e 268 (545)
.+. .|+.++.+..+.|.......+.++...+ +++..+..-++.. ..|+-...+|+..++..+..|+.
T Consensus 242 ~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~-----------~~~~~~~rEEl~~~R~~i~~Lr~ 310 (546)
T KOG0977|consen 242 YFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERA-----------NVEQNYAREELRRIRSRISGLRA 310 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccc-----------cchhHHHHHHHHHHHhcccchhh
Confidence 333 2888998888888877777777665433 3343322211111 22444588999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 042557 269 LLKETEEDACATKEEEAQLRDSL 291 (545)
Q Consensus 269 ~l~~~E~~~~~~~~E~~~lr~~L 291 (545)
.+.+.|.+...+......|+.-|
T Consensus 311 klselE~~n~~L~~~I~dL~~ql 333 (546)
T KOG0977|consen 311 KLSELESRNSALEKRIEDLEYQL 333 (546)
T ss_pred hhccccccChhHHHHHHHHHhhh
Confidence 99999999999998888888777
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.22 E-value=0.017 Score=68.26 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHH
Q 042557 264 NRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREA 341 (545)
Q Consensus 264 ~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea 341 (545)
..+...+-..+....-|..+++.+...+..+..+.+.....+..-..+-..++..++..-..++++..++..|+..--
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~ 467 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKT 467 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444444455555555566666665556666666666666555555566666666677777777777777665443
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.19 E-value=0.029 Score=65.11 Aligned_cols=223 Identities=24% Similarity=0.230 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH----HH
Q 042557 97 MAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSK-----------KAMES----LA 161 (545)
Q Consensus 97 lqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkek-----------ka~Ee----La 161 (545)
+..++.++--.|+-..=++.-+.++-..++.++..+++++..+..+|+.++.+.+.-- +.++. |.
T Consensus 302 ~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLK 381 (1243)
T KOG0971|consen 302 YKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLK 381 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHH
Confidence 3333333333333333334445677778888888888988888888888877653211 11122 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhh
Q 042557 162 SALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQK 241 (545)
Q Consensus 162 ~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~k 241 (545)
.+|--+-.-.-+.+.-.+..+.+++..+.|+..|+. ..+++...++.|+.-|+-++..|+.-. =+|.-..-.+.+
T Consensus 382 dalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r----~kE~Lsr~~d~aEs~iadlkEQVDAAl-GAE~MV~qLtdk 456 (1243)
T KOG0971|consen 382 DALVRLRDLSASEKQDHQKLQKELEKKNSELEELRR----QKERLSRELDQAESTIADLKEQVDAAL-GAEEMVEQLTDK 456 (1243)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHHhh
Confidence 333333333334455556667777777777776553 446677777888888888888776521 123334456778
Q ss_pred hhhHHHhhHhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 042557 242 ELHLVDCVKKSEEENSSLEKEI---NRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKES 318 (545)
Q Consensus 242 E~~~~~~iK~~eee~~~~~~e~---~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~ 318 (545)
+.++-+.||.+++++..|.+-. +.|.++-+..|. -+++|...+....|.+...++.|.+.+-....-+.+..+-
T Consensus 457 nlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~---DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRel 533 (1243)
T KOG0971|consen 457 NLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELEL---DLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFREL 533 (1243)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8899999999999998876533 456666555444 4789999999999999999999999887764444444444
Q ss_pred HHhhHHHHH
Q 042557 319 FLDKETELQ 327 (545)
Q Consensus 319 l~dkE~eLq 327 (545)
++.+-..||
T Consensus 534 va~Lqdqlq 542 (1243)
T KOG0971|consen 534 VAHLQDQLQ 542 (1243)
T ss_pred HHHHHHHHH
Confidence 433333333
No 33
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=0.034 Score=65.06 Aligned_cols=135 Identities=17% Similarity=0.232 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 042557 5 YARNLVEEWKIRVEELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADL 80 (545)
Q Consensus 5 RV~DLl~Evkkql~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~l 80 (545)
-|..++..|..++++|+..-+.+..|.++-- +...++-.++. +++.++..|....... -..-
T Consensus 188 kI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~-------E~~~~l~~le~~r~~~-------~e~s 253 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELN-------EINGELERLEEDRSSA-------PEES 253 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHH-------HHHHHHHHHHHHHhcc-------chhh
Confidence 4778999999999999999999999998866 44444444444 3444444444443322 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 81 DESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKS 153 (545)
Q Consensus 81 eE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEke 153 (545)
+.....+..++.++..+...+-+|.+.|..+.+++.++..++..+......|.-++..+..++..-.+.....
T Consensus 254 ~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~ 326 (1200)
T KOG0964|consen 254 EQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLA 326 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhH
Confidence 3344556667777777788888888888888888887777777777766666666666666666664444333
No 34
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=0.039 Score=65.67 Aligned_cols=151 Identities=20% Similarity=0.238 Sum_probs=84.1
Q ss_pred HHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 042557 232 KISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEE-------EAQLRDSLKEVEAEVIYMQET 304 (545)
Q Consensus 232 e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E-------~~~lr~~Lk~ae~e~~ea~e~ 304 (545)
+..++...++=.++..-|.+.+.++.-+-.++++++..+..+|.++..+..- .+.|...|-.....+.+-+-.
T Consensus 464 ~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~ 543 (1293)
T KOG0996|consen 464 DEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTE 543 (1293)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444555555555555555555555555555444433 333444444444445555555
Q ss_pred HHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhcc--------------cc---ccC
Q 042557 305 LGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQ--------------TA---ENG 367 (545)
Q Consensus 305 ~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~~~~~--------------~~---~~~ 367 (545)
+...+.....|+.-+.+++.+|..+..+-..|+.--.+.+-++.|++..+...+.+.. ++ --|
T Consensus 544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLG 623 (1293)
T KOG0996|consen 544 LDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLG 623 (1293)
T ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccc
Confidence 5555666666666666677777777766666666667888888888876665443311 11 226
Q ss_pred ccccccccccccchh
Q 042557 368 ELTDSEKDYDLLPKV 382 (545)
Q Consensus 368 ~~~~~~~~~~~~~~~ 382 (545)
.|-..+.-||+--..
T Consensus 624 DLg~Id~kYDvAIsT 638 (1293)
T KOG0996|consen 624 DLGAIDEKYDVAIST 638 (1293)
T ss_pred cccccchHHHHHHHH
Confidence 676678888654433
No 35
>PRK01156 chromosome segregation protein; Provisional
Probab=98.15 E-value=0.039 Score=65.24 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHH
Q 042557 297 EVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSL 353 (545)
Q Consensus 297 e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~l 353 (545)
.+..+......+......|...+..+++.+..+....+.++..=+...+.+.++..+
T Consensus 675 ~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~ 731 (895)
T PRK01156 675 RINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKI 731 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555444443333444444444433
No 36
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.15 E-value=0.016 Score=65.10 Aligned_cols=202 Identities=19% Similarity=0.223 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHHH
Q 042557 126 ASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAR--------EAKEKLLSSQTEHETYEAQIEDLRI 197 (545)
Q Consensus 126 sseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~e--------eakekl~~~Q~Ele~~r~Eie~Lq~ 197 (545)
..++.....+++-+..+|+.+..+..-.....+.|...|..+....+ .....+-.+-.++.++-.++.++++
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~ 306 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA 306 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33444555566667777777777766666666666666666554433 4456666677888888999999999
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHH-HHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHH-HHHHH
Q 042557 198 VLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKA-EWEQKELHLVDCVKKSEEENSSLEKEINRLVNLL-KETEE 275 (545)
Q Consensus 198 ~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~-~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l-~~~E~ 275 (545)
++.....++...+-....+.......++.++..+....+ +-=.+|..+++.|.=.--+-..-+.++...+++| -.+++
T Consensus 307 S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr 386 (629)
T KOG0963|consen 307 SLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNR 386 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHh
Confidence 998888888877777677777777777777777666655 5556677777666655222223332444444444 43433
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557 276 DACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI 330 (545)
Q Consensus 276 ~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~ 330 (545)
-+..|++.||-..-.+...++.+..+..++++.....++..++.|++|-.+.
T Consensus 387 ---~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~ 438 (629)
T KOG0963|consen 387 ---KLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQ 438 (629)
T ss_pred ---hhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcc
Confidence 5778999999999888889999999999999999999999999999887765
No 37
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.15 E-value=4.3e-07 Score=106.15 Aligned_cols=299 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 39 DAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQA 118 (545)
Q Consensus 39 ~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el 118 (545)
..+..++.++...|..+...-......+..++.++..+...+++....+.........++.++..|...++..+..
T Consensus 155 ~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~---- 230 (859)
T PF01576_consen 155 SQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQ---- 230 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3334444444444444444444444455555555555555555555555554444445555555555444443333
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 042557 119 LNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIV 198 (545)
Q Consensus 119 ~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~ 198 (545)
+..+......+...|+.++..++.+.++...|...|..+..++..++..+..-......+..++..++.-
T Consensus 231 ----------~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~E 300 (859)
T PF01576_consen 231 ----------LSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAE 300 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------HHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhH
Confidence 3333334444555666666667777777788888888888888888888888777777888888889999
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 199 LKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDAC 278 (545)
Q Consensus 199 L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~ 278 (545)
|..+..||......=..+..-+++++.+...++...+...+.+-..+-+.-+++..++..+..+++.........+....
T Consensus 301 l~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr 380 (859)
T PF01576_consen 301 LEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQR 380 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876666556677789999999999999999999999998888999999999999999888887777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHh-------hHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q 042557 279 ATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLD-------KETELQSVIQENEELRAREADSVKKVEELS 351 (545)
Q Consensus 279 ~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~d-------kE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~ 351 (545)
.+...+..++..+..+..+...+......+.+++..|+..+-+ .+.+-.++..|+++|...-..+.+.+.+|-
T Consensus 381 ~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLe 460 (859)
T PF01576_consen 381 KFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELE 460 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHH
Confidence 7777777777777665555555555555555555555544443 344444555555555555555555444443
No 38
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=0.044 Score=65.31 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhH
Q 042557 268 NLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKV 347 (545)
Q Consensus 268 e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i 347 (545)
..+-.+...+..++..+.+.++.|-.....+...+..+..+..+...++....-+=..+..+.+..+++|.+...++..-
T Consensus 521 ~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~ 600 (1293)
T KOG0996|consen 521 KKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRN 600 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33333333334444444444444444444444444444444444444444444444444555566666666555555444
Q ss_pred HHHHHHH
Q 042557 348 EELSSLL 354 (545)
Q Consensus 348 ~EL~~ll 354 (545)
+=|..|.
T Consensus 601 kVl~al~ 607 (1293)
T KOG0996|consen 601 KVLDALM 607 (1293)
T ss_pred HHHHHHH
Confidence 4444444
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.06 E-value=0.041 Score=62.23 Aligned_cols=322 Identities=12% Similarity=0.145 Sum_probs=171.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHHHHH
Q 042557 5 YARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLH-----------DAESEIAALKEKVGLLEMTI 73 (545)
Q Consensus 5 RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~Le-----------eaesEI~~LqeKve~LE~ev 73 (545)
.++++|.+++.++..+-..+.......+-....+.-+...|..++..|- .+...+..+......+..
T Consensus 109 ~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~-- 186 (569)
T PRK04778 109 EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVE-- 186 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHH--
Confidence 4667777777777777777777766666666666666666666655552 233333333333333322
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh-------------------hHHHHHHH--
Q 042557 74 GRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE----KAQALN-------------------NEKLAASS-- 128 (545)
Q Consensus 74 ~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee----l~el~e-------------------kEk~lsse-- 128 (545)
-.-..+..+++..+..+...+..+...+..+..-+..+... +.++.. .-..+..+
T Consensus 187 l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~ 266 (569)
T PRK04778 187 LTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQID 266 (569)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Confidence 11244555666666666666666655555554444444432 111111 11111111
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------
Q 042557 129 ----------VQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQ------- 191 (545)
Q Consensus 129 ----------Ie~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~E------- 191 (545)
+.........+...|+.+-+.++++..|..........+...+..++.....+..+++.++..
T Consensus 267 ~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e 346 (569)
T PRK04778 267 ENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESE 346 (569)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh
Confidence 222222444444555555555555555544444444444444555555555555555554444
Q ss_pred ---HHHHHHHHHHHHHHHHHhH----------HhHHHHHHHHHHHH---HHHHhHhHHHHHHHHhhhhhHHHhhHhhHHH
Q 042557 192 ---IEDLRIVLKATNEKYESML----------DDAKHEIGLLTNII---KEAKDESKISKAEWEQKELHLVDCVKKSEEE 255 (545)
Q Consensus 192 ---ie~Lq~~L~~aE~k~~~~l----------~ea~~e~~~lkk~~---E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee 255 (545)
+..+...|...+..+.... .+...+...+.+.+ +....++..........|..+-+.+..+...
T Consensus 347 ~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~ 426 (569)
T PRK04778 347 LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444221 12222222222222 2223334444445566666666666666666
Q ss_pred HHHHHHHH---------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHH
Q 042557 256 NSSLEKEI---------NRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETEL 326 (545)
Q Consensus 256 ~~~~~~e~---------~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eL 326 (545)
+..++..+ +..+..+..+..++..+......-.-+|..+..++.++..++..+..+...|.++..-.|..+
T Consensus 427 L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~I 506 (569)
T PRK04778 427 LHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLI 506 (569)
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555 445666666666666666666555555566777888999999999888888888888888777
Q ss_pred HH
Q 042557 327 QS 328 (545)
Q Consensus 327 q~ 328 (545)
|.
T Consensus 507 qy 508 (569)
T PRK04778 507 QY 508 (569)
T ss_pred HH
Confidence 76
No 40
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.06 E-value=0.041 Score=62.16 Aligned_cols=191 Identities=21% Similarity=0.285 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHhHHHHHHHHHHHHHHHHh
Q 042557 160 LASALHEVSVEAREAKEKL-----LSSQTEHETYEAQIEDLRIVL-----KATNEKYESMLDDAKHEIGLLTNIIKEAKD 229 (545)
Q Consensus 160 La~AL~E~e~E~eeakekl-----~~~Q~Ele~~r~Eie~Lq~~L-----~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~ 229 (545)
+=..|.++....+++...- .....++..++.++......| ..++.+ ++.-...|+.++..++.
T Consensus 228 ~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~----~~~i~~~Id~Lyd~lek--- 300 (569)
T PRK04778 228 LPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEK----NEEIQERIDQLYDILER--- 300 (569)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHH----HHHHHHHHHHHHHHHHH---
Confidence 3345555665555554321 223344444444444433332 222222 33444556666655554
Q ss_pred HhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 230 ESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEED---ACATKEEEAQLRDSLKEVEAEVIYMQETLG 306 (545)
Q Consensus 230 E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~---~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ 306 (545)
|..--. .....-..+.+.+....+.+..+..++++|..++...+.+ ...+..+...+...++.....++.......
T Consensus 301 E~~A~~-~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ys 379 (569)
T PRK04778 301 EVKARK-YVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYS 379 (569)
T ss_pred HHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 222111 2222233456677888889999999999999986654443 335556677777777777777777777788
Q ss_pred HHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Q 042557 307 QARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAM 358 (545)
Q Consensus 307 ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~ 358 (545)
.+......|...+...+.+...+......||..|..|+.++..+...+....
T Consensus 380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888899999999999999999999999999999999888654
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.015 Score=68.14 Aligned_cols=240 Identities=22% Similarity=0.267 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 128 SVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 128 eIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
....+..++.-..++|..+..+.+... +-.+..++..+..++.+.+.++...+.-+-.....+..+...++++...-+
T Consensus 709 kf~~l~~ql~l~~~~l~l~~~r~~~~e--~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re 786 (1174)
T KOG0933|consen 709 KFRDLKQQLELKLHELALLEKRLEQNE--FHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRE 786 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCh--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH
Confidence 344555555556666665555543322 233556666666777777777777766777777788888888888887777
Q ss_pred HhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 042557 208 SMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQL 287 (545)
Q Consensus 208 ~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~l 287 (545)
--|.+++.+|.+++.+++. +...|..++.++. .+..+...+..++.-+.-++...+..+..+..++..|
T Consensus 787 ~rlkdl~keik~~k~~~e~-------~~~~~ek~~~e~e----~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l 855 (1174)
T KOG0933|consen 787 RRLKDLEKEIKTAKQRAEE-------SSKELEKRENEYE----RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNL 855 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888877776 7777777776653 3555666666666666666666666777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHH----HhhHHHHHHhHHHHHHHHHHHHhhccc
Q 042557 288 RDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEEL----RAREADSVKKVEELSSLLEEAMAKKQT 363 (545)
Q Consensus 288 r~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~L----r~~Ea~a~~~i~EL~~ll~ea~~~~~~ 363 (545)
+.++..++.++..+...+.+ .++.+.+..+++..+...-+-+ ...+-.-++...|+.++=.++....
T Consensus 856 ~~kv~~~~~~~~~~~~el~~-------~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~-- 926 (1174)
T KOG0933|consen 856 EAKVDKVEKDVKKAQAELKD-------QKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANAR-- 926 (1174)
T ss_pred HHHHHhHHhHHHHHHHHHHH-------HHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHH--
Confidence 77777776666665555544 4555555555555555444442 2233344555666666655543321
Q ss_pred cccCccccccccccccc-hhhhhccccCCC
Q 042557 364 AENGELTDSEKDYDLLP-KVVEFSEENGHA 392 (545)
Q Consensus 364 ~~~~~~~~~~~~~~~~~-~~~~~~~~n~~~ 392 (545)
..+....+.|.++| ...+|...|+.-
T Consensus 927 ---k~v~~l~~k~~wi~~ek~~fgk~gt~y 953 (1174)
T KOG0933|consen 927 ---KEVEKLLKKHEWIGDEKRLFGKKGTDY 953 (1174)
T ss_pred ---HHHHHHHHhccchhHHHHhhcCCCCcc
Confidence 01122267777777 666777776544
No 42
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.98 E-value=0.028 Score=62.90 Aligned_cols=152 Identities=18% Similarity=0.245 Sum_probs=112.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 042557 47 GNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNET-SEMAKTVESLKFELETVKEEKAQALNNEKLA 125 (545)
Q Consensus 47 ~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl-~slqkelesLkseLe~~eeel~el~ekEk~l 125 (545)
.-+..|..+|...+.-=++|+.|+.+...|..+|+.++..+..-.-.+ .-+..++-.++.-|+..... ...+
T Consensus 39 rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~-------ra~~ 111 (546)
T KOG0977|consen 39 REKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARE-------RAKL 111 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHH-------HHHH
Confidence 446778889999999999999999999999999999987776543222 23455555555444443333 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 126 ASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK 205 (545)
Q Consensus 126 sseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k 205 (545)
.-+|..|..++..+...++.+.......+....++...|.+++++..-++.+...+..++..++.+..+|...|..+...
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55566666666666666666666666667777788889999999999999999999999999999999998888766543
No 43
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.95 E-value=0.059 Score=62.68 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHh
Q 042557 170 EAREAKEKLLSSQTEHETYEAQIED------------------LRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDES 231 (545)
Q Consensus 170 E~eeakekl~~~Q~Ele~~r~Eie~------------------Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~ 231 (545)
+++-+++++..+..+++-++.|+++ -...|++|=.|+|-..-.++.++..+-+-+|...+|.
T Consensus 333 eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~ 412 (1243)
T KOG0971|consen 333 EVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSEL 412 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHH
Confidence 3444455555555555555555544 5677888889999888899999999999988877776
Q ss_pred HHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 232 KISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAE 311 (545)
Q Consensus 232 e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e 311 (545)
..-..--.. |...+-.++-.+..++.+++. . .-||.++..+.+-|=.|-+.++.++.++++.. .+.--
T Consensus 413 ~eL~r~kE~----Lsr~~d~aEs~iadlkEQVDA---A-lGAE~MV~qLtdknlnlEekVklLeetv~dlE----alee~ 480 (1243)
T KOG0971|consen 413 EELRRQKER----LSRELDQAESTIADLKEQVDA---A-LGAEEMVEQLTDKNLNLEEKVKLLEETVGDLE----ALEEM 480 (1243)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---h-hcHHHHHHHHHhhccCHHHHHHHHHHHHHHHH----HHHHH
Confidence 654331111 111122244444444444432 1 23788888888889999999999888887753 23334
Q ss_pred HHhHHHhHHhhHHHHHHHHHHHHHH
Q 042557 312 SMKLKESFLDKETELQSVIQENEEL 336 (545)
Q Consensus 312 ~~~Lk~~l~dkE~eLq~i~~Ene~L 336 (545)
+-+|.++-...|.+| +.|+|.+
T Consensus 481 ~EQL~Esn~ele~DL---reEld~~ 502 (1243)
T KOG0971|consen 481 NEQLQESNRELELDL---REELDMA 502 (1243)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH
Confidence 445555555555443 3444443
No 44
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.91 E-value=0.076 Score=60.01 Aligned_cols=343 Identities=20% Similarity=0.280 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557 8 NLVEEWKIRVEELE--------MQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD 79 (545)
Q Consensus 8 DLl~Evkkql~sLE--------~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~ 79 (545)
..+..|+++...+- .++-.|+.| .....+..+...+..+...+..+...+..+...+..|...-..-...
T Consensus 60 ~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~--~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~ 137 (560)
T PF06160_consen 60 EKFEEWRQKWDEIVTKQLPEIEEQLFEAEEY--ADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREE 137 (560)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666554444 333333333 11144444555555555555555555555555555544433333344
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 80 LDESERKHSMAKNETSE----MAKTVESLKFELETVKEEKAQALN-----NEKLAASSVQNLLEEKHKLINELENSREEE 150 (545)
Q Consensus 80 leE~k~eL~~~ekEl~s----lqkelesLkseLe~~eeel~el~e-----kEk~lsseIe~L~eel~kl~~ELE~~~~ee 150 (545)
+..++..+..+.+.+-. +-..+..|...|..++.......+ ..-.+...+..+...+..+..-++.+=.-.
T Consensus 138 i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~ 217 (560)
T PF06160_consen 138 IEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLY 217 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44444333333333322 222223333333333333111100 113333444444444444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHhHHHHHHHHHHHH
Q 042557 151 EKSKKAMESLASALHEVSVEAREAKEK---L--LSSQTEHETYEAQIEDLRIVLKATNE-KYESMLDDAKHEIGLLTNII 224 (545)
Q Consensus 151 Ekekka~EeLa~AL~E~e~E~eeakek---l--~~~Q~Ele~~r~Eie~Lq~~L~~aE~-k~~~~l~ea~~e~~~lkk~~ 224 (545)
.... ..+-..|.++....+++... + ...-.++..++..+..+...|...+. .-+..++.....|+.++..+
T Consensus 218 ~~l~---~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~l 294 (560)
T PF06160_consen 218 KELQ---KEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDIL 294 (560)
T ss_pred HHHH---HHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 33445555555555554443 1 11222333334444443333322110 11122444555666666666
Q ss_pred HHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHH
Q 042557 225 KEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACA---TKEEEAQLRDSLKEVEAEVIYM 301 (545)
Q Consensus 225 E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~---~~~E~~~lr~~Lk~ae~e~~ea 301 (545)
++ |.. +...-...-..+.+.|.........+..+++++..++.....+... +......+...+......+..-
T Consensus 295 e~---E~~-Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~ 370 (560)
T PF06160_consen 295 EK---EVE-AKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQ 370 (560)
T ss_pred HH---HHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55 222 1222223344566677888888889999999999988876655433 3333444444444445555555
Q ss_pred HHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHh
Q 042557 302 QETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMA 359 (545)
Q Consensus 302 ~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~~ 359 (545)
.-.-..+......+...+...+.....+......||.-|.+|+.++..+...+.+..-
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR 428 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666667777777777777777778888999999999999999999997744
No 45
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.74 E-value=0.14 Score=58.36 Aligned_cols=186 Identities=17% Similarity=0.250 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Q 042557 53 HDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE---KLAASSV 129 (545)
Q Consensus 53 eeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE---k~lsseI 129 (545)
.....++..|+.++..+...+..+...+......+.++..+..........+..++.-.+.-..-+.+.+ .+|...+
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666666666666666555553333322222222 2223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 130 QNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESM 209 (545)
Q Consensus 130 e~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~ 209 (545)
..-...+..+...-+ ..+ --|...+..+......-......+..++..++.++..+...+..-+..|.
T Consensus 404 ~~s~~rl~~L~~qWe-------~~R---~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~-- 471 (594)
T PF05667_consen 404 EASEQRLVELAQQWE-------KHR---APLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYK-- 471 (594)
T ss_pred HHHHHHHHHHHHHHH-------HHH---hHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 332223333333222 222 12222333333333333333444445555666666666655555454444
Q ss_pred HHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHH
Q 042557 210 LDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEK 261 (545)
Q Consensus 210 l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~ 261 (545)
.|...|+++-.. .....++++=.++|+.|++..+++...-.
T Consensus 472 ---------qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~ 512 (594)
T PF05667_consen 472 ---------QLVKELEKLPKD--VNRSAYTRRILEIVKNIRKQKEEIEKILS 512 (594)
T ss_pred ---------HHHHHHHhCCCC--CCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344445544444 46679999999999999999998865433
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.70 E-value=0.077 Score=61.47 Aligned_cols=254 Identities=19% Similarity=0.252 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557 103 SLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQ 182 (545)
Q Consensus 103 sLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q 182 (545)
.|..+++.++.++...-..|..+..+|..++.-=..+..+|..+ ++..|.|+..|..+......-+.-+..+.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~ql-------r~ene~Lq~Kl~~L~~aRq~DKq~l~~LE 494 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQL-------RQENEQLQNKLQNLVQARQQDKQSLQQLE 494 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555455555666666666655444445554444 44445555666666655555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHH
Q 042557 183 TEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKE 262 (545)
Q Consensus 183 ~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e 262 (545)
..|..-+..--.+...| .+|.|-+.. .+ .+....+ +.+.|+.-|+. -........|..|
T Consensus 495 krL~eE~~~R~~lEkQL-~eErk~r~~-ee-----~~aar~~---------~~~~~~r~e~~-----e~~r~r~~~lE~E 553 (697)
T PF09726_consen 495 KRLAEERRQRASLEKQL-QEERKARKE-EE-----EKAARAL---------AQAQATRQECA-----ESCRQRRRQLESE 553 (697)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhH-HH-----Hhhhhcc---------ccchhccchhH-----HHHHHHHHHHHHH
Confidence 33333332222233333 222221100 00 0000000 11123332332 1233444556677
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH-------HhhHHHHHHHHHHHHH
Q 042557 263 INRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESF-------LDKETELQSVIQENEE 335 (545)
Q Consensus 263 ~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l-------~dkE~eLq~i~~Ene~ 335 (545)
+.+|+..|+.+|.++..+..+..+||..-+..+.+...+-.+|.-++..|..|-.+| +|+=.+|-....++|.
T Consensus 554 ~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei 633 (697)
T PF09726_consen 554 LKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEI 633 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888888888888888877545566677777777777777777776665 4555667777777776
Q ss_pred HHhhHHHHHHhHHHHHHHHHHHHhhcccccc-Cccccccccccccchhhhhc
Q 042557 336 LRAREADSVKKVEELSSLLEEAMAKKQTAEN-GELTDSEKDYDLLPKVVEFS 386 (545)
Q Consensus 336 Lr~~Ea~a~~~i~EL~~ll~ea~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 386 (545)
+...=-.=-+-|.||+.=+++.++==+...- +.++.+.|.|. ++++..+
T Consensus 634 ~~~~~~~~d~ei~~lk~ki~~~~av~p~~~~~~~~~~~~~~~~--~~~~~~~ 683 (697)
T PF09726_consen 634 AQGQLRKKDKEIEELKAKIAQLLAVMPSDSYCSAITPPTPHYS--SKFLNSS 683 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCccch--hhhccCC
Confidence 3222222234588888877777764322111 34455566665 4444433
No 47
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.67 E-value=0.25 Score=58.86 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=32.7
Q ss_pred HHHHHHHH---HHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHH
Q 042557 215 HEIGLLTN---IIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVN 268 (545)
Q Consensus 215 ~e~~~lkk---~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e 268 (545)
.++.++++ .+++...+++..+++...+...+...|...+-.+...+.+|..|..
T Consensus 668 ~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 668 REASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555 4555556666666666666666666666666666666666665555
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.60 E-value=0.2 Score=55.83 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 042557 159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIV 198 (545)
Q Consensus 159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~ 198 (545)
.+...+.++...+...+..+.........++.+++.|...
T Consensus 334 ~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444444444444444444
No 49
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.60 E-value=0.1 Score=60.39 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 042557 279 ATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEE 356 (545)
Q Consensus 279 ~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~e 356 (545)
++++.+..|-..|..==-=-.++=.++++++-+.--+...+..+|.++--|.+ +|.+|-.++..
T Consensus 598 amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~--------------ki~~~~av~p~ 661 (697)
T PF09726_consen 598 AMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKA--------------KIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhcCCc
Confidence 66666766666662110001134456777777777777888888877654432 46777777766
No 50
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.59 E-value=0.097 Score=58.24 Aligned_cols=94 Identities=14% Similarity=0.302 Sum_probs=55.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHH
Q 042557 249 VKKSEEENSSLEKEINRLVNLLK---ETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETE 325 (545)
Q Consensus 249 iK~~eee~~~~~~e~~~l~e~l~---~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~e 325 (545)
+-...+.+..++.++..+...+. ...++...+.....+++..+......+.........++.+...|.....+.+.+
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~ 380 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEE 380 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Confidence 33344455555555544444443 444455556666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhhHHH
Q 042557 326 LQSVIQENEELRAREAD 342 (545)
Q Consensus 326 Lq~i~~Ene~Lr~~Ea~ 342 (545)
|..+..+++.++..-+.
T Consensus 381 l~~l~~~l~~~~~~~~~ 397 (562)
T PHA02562 381 LAKLQDELDKIVKTKSE 397 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665544333
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.58 E-value=0.45 Score=59.51 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 042557 294 VEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSS 352 (545)
Q Consensus 294 ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ 352 (545)
++....+....++.+......+.+.....-..++.+.+.+..|...--+=.....-|.+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~ 614 (1486)
T PRK04863 556 LEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALAR 614 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHH
Confidence 34444444555555555555555555566666666666666655544444444444444
No 52
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.56 E-value=0.37 Score=58.00 Aligned_cols=79 Identities=23% Similarity=0.216 Sum_probs=35.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHhHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 042557 272 ETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKL-------KESFLDKETELQSVIQENEELRAREADSV 344 (545)
Q Consensus 272 ~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~L-------k~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~ 344 (545)
-++.-+.-+.++.+-|+.-+++.....+...-....+..+..+| .+...-..++|.+-.++.+. +.+|....
T Consensus 718 k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t-~~~Ekq~~ 796 (1317)
T KOG0612|consen 718 KAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT-KMLEKQLK 796 (1317)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc-HHHHHHHH
Confidence 34444444555555555555544433333333333333333332 23333344444533333333 56666666
Q ss_pred HhHHHHH
Q 042557 345 KKVEELS 351 (545)
Q Consensus 345 ~~i~EL~ 351 (545)
..+.+|.
T Consensus 797 ~~~~~l~ 803 (1317)
T KOG0612|consen 797 KLLDELA 803 (1317)
T ss_pred HHHHHHH
Confidence 5555554
No 53
>PRK11637 AmiB activator; Provisional
Probab=97.54 E-value=0.2 Score=54.51 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=20.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 042557 179 LSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAK 228 (545)
Q Consensus 179 ~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~ 228 (545)
...+.+|+..+.+...+...|..-...++..+.+-..+...+...+..+.
T Consensus 204 ~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 204 QAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344443334444433333334333333344444444444443
No 54
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.6 Score=55.70 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=46.6
Q ss_pred HHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 226 EAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETL 305 (545)
Q Consensus 226 ~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~ 305 (545)
+...--..+++....+-.++...++.....+..+...++.|...+...++-...+..+...|+.-.-.+..+..+++..+
T Consensus 388 ~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL 467 (1141)
T KOG0018|consen 388 RNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEEL 467 (1141)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHH
Confidence 33334445666777777777777777777777777777777776665555544444444444444444444444444433
Q ss_pred HH
Q 042557 306 GQ 307 (545)
Q Consensus 306 ~e 307 (545)
..
T Consensus 468 ~~ 469 (1141)
T KOG0018|consen 468 VE 469 (1141)
T ss_pred HH
Confidence 33
No 55
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.46 Score=53.37 Aligned_cols=285 Identities=16% Similarity=0.139 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHH
Q 042557 65 KVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNL---LEEKHKLIN 141 (545)
Q Consensus 65 Kve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L---~eel~kl~~ 141 (545)
+++.+....++++.|+.....-+.++..-...+...+..+..+|+.+++++.-+......|.-+|..- ..+.++..+
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~ 339 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNL 339 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 33344444455555555555555555555566666666666666666666554444444444333321 113444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhHHHHHHHH
Q 042557 142 ELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIV-LKATNEKYESMLDDAKHEIGLL 220 (545)
Q Consensus 142 ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~-L~~aE~k~~~~l~ea~~e~~~l 220 (545)
|...+...+.+...+.+.|...+.+...+++ ..+...+.-+-++..-+.++... +..+-- ...--..+-.....+
T Consensus 340 Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~---~~f~~le~~~~~~~~l~~~i~l~~~~~~~n-~~~~pe~~~~~~~d~ 415 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELDRLSKEVWELKLEIE---DFFKELEKKFIDLNSLIRRIKLGIAENSKN-LERNPERAATNGVDL 415 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCcCCccCccccccc
Confidence 4444444444445555555554444433322 23333333444444444444444 111111 000111111112222
Q ss_pred HHHHHHHHhHh----HHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557 221 TNIIKEAKDES----KISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA 296 (545)
Q Consensus 221 kk~~E~~~~E~----e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~ 296 (545)
+..|.-...++ ...+......-..++..+....--+.+.+..+-.+...+..++.++..++.+.+++. ..
T Consensus 416 k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~------~k 489 (581)
T KOG0995|consen 416 KSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEW------KK 489 (581)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 32222222221 111111111122222222222222222333333333333333333333333333222 22
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhH-HHHHHHHHHHHh
Q 042557 297 EVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKV-EELSSLLEEAMA 359 (545)
Q Consensus 297 e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i-~EL~~ll~ea~~ 359 (545)
...++..-.+.+...+..+.-.+.+-++-++++.-+++.+-..=..-+.++ ..|-++++.++.
T Consensus 490 ~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~ 553 (581)
T KOG0995|consen 490 CRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISD 553 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444444555677778888888999999999999998665555555555 899999998766
No 56
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.30 E-value=0.72 Score=55.38 Aligned_cols=217 Identities=19% Similarity=0.201 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 042557 6 ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESER 85 (545)
Q Consensus 6 V~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~ 85 (545)
+.|.-..+...+...+.=+.....-+...+.-...+..-|+..+.....++.-+..|+.=+.++..-+..-.++.+.++.
T Consensus 1417 A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~ 1496 (1758)
T KOG0994|consen 1417 AGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEE 1496 (1758)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 33443344333333333333333333333344555666666666666666666666666665555545455555554432
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 86 KHSM-AKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASAL 164 (545)
Q Consensus 86 eL~~-~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL 164 (545)
--.. +.-++..--..|..|..+|...-..+. +-..+-..-.......+.|..+-..++..-+.+++.+++...+|
T Consensus 1497 vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~----nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL 1572 (1758)
T KOG0994|consen 1497 VAEEVLALELPLTPEQIQQLTGEIQERVASLP----NVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEAL 1572 (1758)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc----cHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2221 111122222233333333332222210 00111111122222334444555555555556666666666666
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhH
Q 042557 165 HEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDE 230 (545)
Q Consensus 165 ~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E 230 (545)
.++....-.+..-+...-..+..++.-+...+.....||.... .|...+.-|-..|+.++..
T Consensus 1573 ~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~----~a~q~~~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1573 EEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLAT----SATQQLGELETRMEELKHK 1634 (1758)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 6655555555544444444555555555555555555555533 3344444444445444433
No 57
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.27 E-value=0.31 Score=57.04 Aligned_cols=243 Identities=21% Similarity=0.226 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HhhHHHHHHHHHHHHHHHHHHH
Q 042557 66 VGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQ----A-LNNEKLAASSVQNLLEEKHKLI 140 (545)
Q Consensus 66 ve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~e----l-~ekEk~lsseIe~L~eel~kl~ 140 (545)
++..+.++..++..|+.+.+.-...+..+..+-..|-+....|+.++++..+ + ..+-..+...-..|..++-.+.
T Consensus 19 wekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~ 98 (769)
T PF05911_consen 19 WEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELS 98 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777777888888888888888888877321 1 1111222222223444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 042557 141 NELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLL 220 (545)
Q Consensus 141 ~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~l 220 (545)
+.|..+..+-....+++.+-...|.++......+...+..++..|+.+..+...|+ |++..+
T Consensus 99 ~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lk------------------ye~~~~ 160 (769)
T PF05911_consen 99 KRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLK------------------YELHVL 160 (769)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 44444443333333333333333333333333334434444444444444333333 333444
Q ss_pred HHHHHHHHhHhH---HHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHH-------
Q 042557 221 TNIIKEAKDESK---ISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLV---NLLKETEEDACATKEEEAQL------- 287 (545)
Q Consensus 221 kk~~E~~~~E~e---~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~---e~l~~~E~~~~~~~~E~~~l------- 287 (545)
.+-|+.-..|.+ .+.+..+..-.+-|+-|.+++.|...|+.-+-+=+ +.+. -++.|.+.|
T Consensus 161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a-------~mk~ev~~~~~~~~~~ 233 (769)
T PF05911_consen 161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALA-------QMKNEVESLGRDSGEN 233 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHH-------HhHHHHHHhccccccc
Confidence 444443333333 24457777788888888889988877776552100 1111 334555554
Q ss_pred HH----------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHH
Q 042557 288 RD----------------SLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQEN 333 (545)
Q Consensus 288 r~----------------~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~En 333 (545)
|. .......+....-+++..+.-+|--||+.|..+.++||+.+-=|
T Consensus 234 r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~ 295 (769)
T PF05911_consen 234 RRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMY 295 (769)
T ss_pred cCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11233556677888999999999999999999999999976544
No 58
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.87 Score=54.11 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 126 ASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK 205 (545)
Q Consensus 126 sseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k 205 (545)
...+.+++.+++.+.+.++......++....++-|.....+++.+.+-.+..+..+...+..+..++..|.+.+..++.-
T Consensus 786 e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~ 865 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD 865 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 34556666777777777777777777777778888888888888888888888888888888888888888888776655
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 042557 206 YESMLDDAKHEIGLLTNIIKEAKDESKISKAEW 238 (545)
Q Consensus 206 ~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~ 238 (545)
.. .+..++.-+++.+-.+-.++......|
T Consensus 866 ~~----~~~~el~~~k~k~~~~dt~i~~~~~~~ 894 (1174)
T KOG0933|consen 866 VK----KAQAELKDQKAKQRDIDTEISGLLTSQ 894 (1174)
T ss_pred HH----HHHHHHHHHHHHHHhhhHHHhhhhhHH
Confidence 44 333444444444433333343333333
No 59
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.18 E-value=1.1 Score=55.14 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=30.4
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 042557 36 ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDE 82 (545)
Q Consensus 36 lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE 82 (545)
.++..-..++...+..++.+...+..|..+...++..+..+...+..
T Consensus 345 ~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~ 391 (1201)
T PF12128_consen 345 EQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEE 391 (1201)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666667777777777777777777776666555555443
No 60
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.15 E-value=0.15 Score=51.81 Aligned_cols=116 Identities=17% Similarity=0.278 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 042557 54 DAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLL 133 (545)
Q Consensus 54 eaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~ 133 (545)
.+-.++..+..++......+...++.++.++..+...+.++..+...+..+.++|..+... .+.+...+...+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r-------~~~~e~kl~~v~ 86 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER-------IKRAEEKLSAVK 86 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhccc
Confidence 3334444444444444444444444444444444444444444444444444444443333 222222222222
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 134 E--EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKE 176 (545)
Q Consensus 134 e--el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeake 176 (545)
. +++.|.+++..+..+.......+.++...++.++.+....+.
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 455555555555554444444444444444444444333333
No 61
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.14 E-value=0.31 Score=48.05 Aligned_cols=51 Identities=29% Similarity=0.323 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 219 LLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEED 276 (545)
Q Consensus 219 ~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~ 276 (545)
.|.+.++-...-+...+..++.+-.. +..++..++.++..|...+...+++
T Consensus 143 ~Lek~leL~~k~~~rql~~e~kK~~~-------~~~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 143 ELEKQLELENKSFRRQLASEKKKHKE-------AQEEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444344444466667776666 5666777777777777777776664
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.09 E-value=0.21 Score=50.78 Aligned_cols=52 Identities=29% Similarity=0.268 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 124 LAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAK 175 (545)
Q Consensus 124 ~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeak 175 (545)
.|..++..+..+.+.+.++|..+..+.+...+...++...+...+..+.+++
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444333333333
No 63
>PLN03188 kinesin-12 family protein; Provisional
Probab=97.04 E-value=1.4 Score=53.76 Aligned_cols=147 Identities=21% Similarity=0.182 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 042557 135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAK 214 (545)
Q Consensus 135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~ 214 (545)
++.....--+.++-+++.+|+..++|..||+-+=..--..-+.|..+|....++-..-.+++.
T Consensus 1073 eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~e----------------- 1135 (1320)
T PLN03188 1073 ELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQE----------------- 1135 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 344444444556667777788878877777765444444444444444333332211111111
Q ss_pred HHHHHHHHHHHHHHhHhHHHHH--HHHhhhhhHHHhhHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhH
Q 042557 215 HEIGLLTNIIKEAKDESKISKA--EWEQKELHLVDCVKKSEEENSSLEKEI-----------NRLVNLLKETEEDACATK 281 (545)
Q Consensus 215 ~e~~~lkk~~E~~~~E~e~s~~--~~~~kE~~~~~~iK~~eee~~~~~~e~-----------~~l~e~l~~~E~~~~~~~ 281 (545)
=|.+.+.+.+ .-.+.+.-| |+.+-.|++.++.+- -.|..+|+++=.-+++.
T Consensus 1136 ------------gi~dvkkaaakag~kg~~~~f---~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aa- 1199 (1320)
T PLN03188 1136 ------------GIDDVKKAAARAGVRGAESKF---INALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAA- 1199 (1320)
T ss_pred ------------HHHHHHHHHHHhccccchHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH-
Confidence 1223333333 333334443 555666666666653 33333333332222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042557 282 EEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKE 317 (545)
Q Consensus 282 ~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~ 317 (545)
.+|--.||+||..+..|+++...+..++.+++-
T Consensus 1200 ---gellvrl~eaeea~~~a~~r~~~~eqe~~~~~k 1232 (1320)
T PLN03188 1200 ---GELLVRLKEAEEALTVAQKRAMDAEQEAAEAYK 1232 (1320)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444566666666677666666666666554
No 64
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.86 E-value=0.76 Score=48.00 Aligned_cols=217 Identities=21% Similarity=0.217 Sum_probs=126.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHH----HHHHHHH
Q 042557 73 IGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE-------KLAASSVQNLLE----EKHKLIN 141 (545)
Q Consensus 73 v~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE-------k~lsseIe~L~e----el~kl~~ 141 (545)
+..|+++..-++..|..-.+.-..+.++|+++.+.|..+-.++.+...-. ....++--.+.+ ++..+..
T Consensus 65 Ln~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd 144 (305)
T PF14915_consen 65 LNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKD 144 (305)
T ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHH
Confidence 33333333333333333333334455556666666555554433222111 222222223333 3444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 042557 142 ELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLT 221 (545)
Q Consensus 142 ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lk 221 (545)
..+.+..++.++...+..|...|+.....+++----+...|-.+.+...++..+.......+.+..
T Consensus 145 ~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~-------------- 210 (305)
T PF14915_consen 145 NNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVN-------------- 210 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------
Confidence 567777888888888888888888888888877777777777777777766666666655554432
Q ss_pred HHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHH
Q 042557 222 NIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDAC----ATKEEEAQLRDSLKEVEAE 297 (545)
Q Consensus 222 k~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~----~~~~E~~~lr~~Lk~ae~e 297 (545)
.+..-|++ .++.+.-++.++.=|+-+|-+|-.+.. ++.+=-.++.++++.+.++
T Consensus 211 -----------k~~~Kqes-----------~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae 268 (305)
T PF14915_consen 211 -----------KYIGKQES-----------LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAE 268 (305)
T ss_pred -----------HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 13444555 677788888888777777777665532 1222233456666654444
Q ss_pred HHH----HHHHHHHHHHHHHhHHHhHHhhHHH
Q 042557 298 VIY----MQETLGQARAESMKLKESFLDKETE 325 (545)
Q Consensus 298 ~~e----a~e~~~ea~~e~~~Lk~~l~dkE~e 325 (545)
... +.++..++..+..-|++.+-.-|++
T Consensus 269 ~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 269 SEKQVLLLEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333 6777777888888888887665554
No 65
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.86 E-value=0.34 Score=45.50 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=22.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 74 GRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQA 118 (545)
Q Consensus 74 ~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el 118 (545)
..++..+..+..++...+.++.+++..+..|..+++.+...+..+
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555555554433
No 66
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.82 E-value=1.4 Score=50.61 Aligned_cols=264 Identities=18% Similarity=0.179 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHh-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042557 6 ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLE-------GNNDKLHDAESEIAALKEKVGLLEMTIGRQKA 78 (545)
Q Consensus 6 V~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE-------~lk~~LeeaesEI~~LqeKve~LE~ev~~le~ 78 (545)
.+|.+...+.++.+|+.++.....=..+..-||.--..+++ .+..+|..+......++.+....+..+..+..
T Consensus 329 h~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~e 408 (739)
T PF07111_consen 329 HRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSE 408 (739)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777777777776666655555544433322222 33444444444444444444444433332222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------------------------HHHHHHHH
Q 042557 79 DLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE----------------------------KLAASSVQ 130 (545)
Q Consensus 79 ~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE----------------------------k~lsseIe 130 (545)
- +...+..+.+.-..|+...+.|..+.+.+.|+-.+- ..+..++.
T Consensus 409 a-------v~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELq 481 (739)
T PF07111_consen 409 A-------VSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQ 481 (739)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHH
Confidence 2 222222333333333333333433333322222211 13455566
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 131 NLLEEKHKLINELENSREEE-EKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESM 209 (545)
Q Consensus 131 ~L~eel~kl~~ELE~~~~ee-Ekekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~ 209 (545)
.+.++.+++..+|...-.-+ ..+..+-+. .+++..........+..++...+..+..+..-|..|+..|++
T Consensus 482 qLReERdRl~aeLqlSa~liqqeV~~ArEq-------geaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe- 553 (739)
T PF07111_consen 482 QLREERDRLDAELQLSARLIQQEVGRAREQ-------GEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE- 553 (739)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-
Confidence 66666666666666443222 222223343 444444444444444445555566666677777777777663
Q ss_pred HHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHH
Q 042557 210 LDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEI-NRLVNLLKETEEDACATKEEEAQLR 288 (545)
Q Consensus 210 l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~-~~l~e~l~~~E~~~~~~~~E~~~lr 288 (545)
++.+..+++--|.+.+...+.++ ++.++ ++ .++++.|.++|++++..+-|-++--
T Consensus 554 ---s~eea~~lR~EL~~QQ~~y~~al-----------------qekvs----evEsrl~E~L~~~E~rLNeARREHtKaV 609 (739)
T PF07111_consen 554 ---STEEAAELRRELTQQQEVYERAL-----------------QEKVS----EVESRLREQLSEMEKRLNEARREHTKAV 609 (739)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444322222222 22222 22 5788888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042557 289 DSLKEVEAEVIYMQETLGQA 308 (545)
Q Consensus 289 ~~Lk~ae~e~~ea~e~~~ea 308 (545)
-+|.|++-.+.-=+++..++
T Consensus 610 VsLRQ~qrqa~reKer~~E~ 629 (739)
T PF07111_consen 610 VSLRQIQRQAAREKERNQEL 629 (739)
T ss_pred HHHHHHHHHHHHhhchhHHH
Confidence 88887776665555555544
No 67
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.81 E-value=1.6 Score=50.89 Aligned_cols=333 Identities=21% Similarity=0.250 Sum_probs=186.7
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHH
Q 042557 6 ARNLVEEWKI-RVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD--LDE 82 (545)
Q Consensus 6 V~DLl~Evkk-ql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~--leE 82 (545)
|-||+.|+.= -++-|+.|+..+++=.-...-.|.-.+.+|+.....|.+....|..|...+..+..-....+.. .+.
T Consensus 255 v~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~ 334 (717)
T PF09730_consen 255 VSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDS 334 (717)
T ss_pred cchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 6789888864 5778999999997544444467777777888888888777777777777777766511100000 000
Q ss_pred ------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHH
Q 042557 83 ------------S---ERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE----KLAASSVQNLLEEKHKLINEL 143 (545)
Q Consensus 83 ------------~---k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE----k~lsseIe~L~eel~kl~~EL 143 (545)
. ...+...+-.+...-.++..|+.+|..++..+..+..+. ..+.+.+.++..++..+...
T Consensus 335 ~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~- 413 (717)
T PF09730_consen 335 EKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKS- 413 (717)
T ss_pred ccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 0 000222334444444455555555555544433333322 23344444444444444332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHh---------
Q 042557 144 ENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKA--TNEKYESMLDD--------- 212 (545)
Q Consensus 144 E~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~--aE~k~~~~l~e--------- 212 (545)
...-+..+.+|...|..+..-+.+....+..+|.+|-.+-.++.+|=.-+=. =++=-++|||-
T Consensus 414 ------~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD~yr~~r~~~~ 487 (717)
T PF09730_consen 414 ------SREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRVMLDYYRQGRQTRR 487 (717)
T ss_pred ------hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHHhhhhhhc
Confidence 2222445677788888888888888888888888888888888873221100 01111111111
Q ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHHHhH
Q 042557 213 --------------------------------------------------------------AKHEIGLLTNIIKEAKDE 230 (545)
Q Consensus 213 --------------------------------------------------------------a~~e~~~lkk~~E~~~~E 230 (545)
.+.+|..|..+|++
T Consensus 488 ~~~~~e~~~~~s~~~~~~~~~~~e~~~~~~~~~~~s~~~s~~~S~~~D~r~ep~~i~nl~~~irdQikhL~~av~~---- 563 (717)
T PF09730_consen 488 ESSSVEERGLSSPILTDRGASSREMITSESGESSPSPSSSCPGSPVSDSRKEPMNIYNLVAIIRDQIKHLQRAVDR---- 563 (717)
T ss_pred cCCCcccccccCcccccccccccccccCCCCCCCCCCCCCCCCCccchhccCCcchhhHHHHHHHHHHHHHHHHHH----
Confidence 11222222322222
Q ss_pred hHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 042557 231 SKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQA-R 309 (545)
Q Consensus 231 ~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea-~ 309 (545)
+..-+..+=. .......+..+...+..+|-+|+..|. .-++..+-||..||..-.-+.+|=..+... -
T Consensus 564 ---t~e~srq~~~-~~~~~~~~d~d~e~l~eqilKLKSLLS-------TKREQIaTLRTVLKANKqTAEvALanLKsKYE 632 (717)
T PF09730_consen 564 ---TTELSRQRVA-SRSSASEADKDKEELQEQILKLKSLLS-------TKREQIATLRTVLKANKQTAEVALANLKSKYE 632 (717)
T ss_pred ---HHHHHhhhcc-ccccCCcccccHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2221111111 001112245677778888888888888 557778999999977655444333222222 3
Q ss_pred HHHHhHHHhHHhhHHHHHHHHHHHHH---HHhhH----HHHHHhHHHHHHHHHHHHhh
Q 042557 310 AESMKLKESFLDKETELQSVIQENEE---LRARE----ADSVKKVEELSSLLEEAMAK 360 (545)
Q Consensus 310 ~e~~~Lk~~l~dkE~eLq~i~~Ene~---Lr~~E----a~a~~~i~EL~~ll~ea~~~ 360 (545)
.+=.-..+.+.++=++|..+..+--. ||+.= +-+.-.++|+.+.|+.|-.-
T Consensus 633 ~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemqrqL~aAEdE 690 (717)
T PF09730_consen 633 NEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQRQLAAAEDE 690 (717)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444567777888888888877666 56543 23556688888888877553
No 68
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.81 E-value=0.88 Score=47.89 Aligned_cols=169 Identities=18% Similarity=0.150 Sum_probs=119.2
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 042557 36 ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE- 114 (545)
Q Consensus 36 lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee- 114 (545)
.++..++.-|+.---+|+-+----.+|-.+...|...+..++..+......+.+...+++-....+.-+.+.-+.....
T Consensus 62 ~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~ 141 (306)
T PF04849_consen 62 NDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPES 141 (306)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhccccc
Confidence 4677777777777777766655557888888888888888888888877777777777766665555444333221111
Q ss_pred --------------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 115 --------------------KAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREA 174 (545)
Q Consensus 115 --------------------l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eea 174 (545)
+..+..+-+.+..+-..|..+...+..+-..+ ++++..-|.+....|.+++..+..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~---EekEqqLv~dcv~QL~~An~qia~L 218 (306)
T PF04849_consen 142 SESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTY---EEKEQQLVLDCVKQLSEANQQIASL 218 (306)
T ss_pred CCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc---cHHHHHHHHHHHHHhhhcchhHHHH
Confidence 34444444555555555555555555554433 5567777888888999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 175 KEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 175 kekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
-..+.....+....+.+|..|.+-+.+.+.|++
T Consensus 219 seELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k 251 (306)
T PF04849_consen 219 SEELARKTEENRRQQEEITSLLSQIVDLQQRCK 251 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888776
No 69
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.80 E-value=0.61 Score=45.94 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=69.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 042557 42 MRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEM---AKTVESLKFELETVKEEKAQA 118 (545)
Q Consensus 42 t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~sl---qkelesLkseLe~~eeel~el 118 (545)
...++++..-=..+..+...|+..+..++-..+.|..++.+++..+...++-+... ..++.+|+.....+++....+
T Consensus 7 ~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 7 LSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666777777777777777777777777777776666555444 666667776666666664444
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 119 LNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLA 161 (545)
Q Consensus 119 ~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa 161 (545)
...-+.+..+...|..++..+..+...+....+..++.+.+|.
T Consensus 87 ~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 87 LAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 4444444444444444444444444444444444444444443
No 70
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=1.4 Score=49.68 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHH
Q 042557 159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISK 235 (545)
Q Consensus 159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~ 235 (545)
+....|++...+.--....+..+-.-++..+.....+...|..++.+|+..-.+|+.+-...+.-++.+..++-...
T Consensus 429 ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~ 505 (581)
T KOG0995|consen 429 EISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLK 505 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444445555555555566677777777775555555554444444444444433333
No 71
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.77 E-value=0.93 Score=47.68 Aligned_cols=143 Identities=21% Similarity=0.253 Sum_probs=102.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhH
Q 042557 171 AREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVK 250 (545)
Q Consensus 171 ~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK 250 (545)
+.....++..+..+-..+|.++..|...-...|.+.+- ++.+.-..++..|..=++|-.-+-
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqq------------------Lv~dcv~QL~~An~qia~LseELa 223 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQ------------------LVLDCVKQLSEANQQIASLSEELA 223 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHH------------------HHHHHHHHhhhcchhHHHHHHHHH
Confidence 35556666666667777777777777666666666442 222223355566666666666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557 251 KSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI 330 (545)
Q Consensus 251 ~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~ 330 (545)
+--+++..-+.+|..|+.++.+.+.+++.+..|+++|+..|.. ++++=..+.+++..|++.-.+--+-|...+
T Consensus 224 ~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~-------ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 224 RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA-------SKESQRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888889999999999999999999999999999988843 444555567778888888877777777777
Q ss_pred HHHHHHHh
Q 042557 331 QENEELRA 338 (545)
Q Consensus 331 ~Ene~Lr~ 338 (545)
.|.-.||.
T Consensus 297 EElk~lR~ 304 (306)
T PF04849_consen 297 EELKTLRK 304 (306)
T ss_pred HHHHHhhC
Confidence 77766664
No 72
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.76 E-value=1.7 Score=50.58 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 042557 4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDES 83 (545)
Q Consensus 4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~ 83 (545)
.|=+.||.|-..+=..|-.++....-=-+-.-..+.-++.+.+.+.....++......+..+...|..++..++..-..+
T Consensus 16 ~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rl 95 (717)
T PF09730_consen 16 EREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARL 95 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666665544444444333332222222334444444444444444444444444444444444444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 84 ERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASA 163 (545)
Q Consensus 84 k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~A 163 (545)
=+.+..++.|..++|+.|-.|+.- +-+++.++=++.++..+++.++.+++.+-.--+.....
T Consensus 96 l~dyselEeENislQKqvs~Lk~s------------------QvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~q 157 (717)
T PF09730_consen 96 LQDYSELEEENISLQKQVSVLKQS------------------QVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQ 157 (717)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHh------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666655555522 22344444455555555555555554444444444444
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Q 042557 164 LHEVSVEAREAKEKLLSSQTEHET 187 (545)
Q Consensus 164 L~E~e~E~eeakekl~~~Q~Ele~ 187 (545)
|.++=..+...|+.-..++.||++
T Consensus 158 leEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 158 LEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555556666655
No 73
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.68 E-value=1.7 Score=49.38 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHH-----
Q 042557 5 YARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAES----EIAALKEKVGLLEMTIGR----- 75 (545)
Q Consensus 5 RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~Leeaes----EI~~LqeKve~LE~ev~~----- 75 (545)
.+++.|..++.++..+-..+.......+-....+.-+...|..++..|-...- .+..|..++..++.....
T Consensus 105 ~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt 184 (560)
T PF06160_consen 105 EIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELT 184 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777766666666666666666666666666543332 234455555555443322
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 76 QKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 76 le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
-..+..+++..+...+..+..+...+..+..-+..+...
T Consensus 185 ~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~ 223 (560)
T PF06160_consen 185 ENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKE 223 (560)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 245677788888888888888888888877777777665
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.62 E-value=0.58 Score=43.96 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=18.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042557 45 LEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHS 88 (545)
Q Consensus 45 LE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~ 88 (545)
+..+...+.....+|..|+.++..++.+|..+...+.+++..+.
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444333333
No 75
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.62 E-value=2 Score=49.40 Aligned_cols=133 Identities=22% Similarity=0.239 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----
Q 042557 6 ARNLVEEWKIRVEELEMQAEEAHKLKRSAS--ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD---- 79 (545)
Q Consensus 6 V~DLl~Evkkql~sLE~QAeKA~ky~elk~--lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~---- 79 (545)
+...|.|..+++.-|+.-... +++-++. ....+++.+|+..+..|.++.+.-..|..........+..+...
T Consensus 259 l~~~l~es~~~~~qLeE~~~~--q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~ 336 (786)
T PF05483_consen 259 LLLLLQESQDKCNQLEEKTKE--QHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQ 336 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455666777777777654443 3334444 77888889999999999998888888888777766655444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 80 LDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSR 147 (545)
Q Consensus 80 leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~ 147 (545)
+++.+.....-.--+..++..+.+|+.-|.. =..+-+.+.+++.-++-++.+-..+|+...
T Consensus 337 ~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~-------Eqqr~~~~ed~lk~l~~eLqkks~eleEmt 397 (786)
T PF05483_consen 337 MEELNKAKAQHSFVVTELQTTICNLKELLTT-------EQQRLKKNEDQLKILTMELQKKSSELEEMT 397 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhhHHHHHHH
Confidence 3333333222223333444444444433322 233334455555555555555555555443
No 76
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.61 E-value=2.7 Score=50.84 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042557 253 EEENSSLEKEINRLVNLL 270 (545)
Q Consensus 253 eee~~~~~~e~~~l~e~l 270 (545)
+..+.-++..+......+
T Consensus 1660 ~q~~~~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1660 EQGLEILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555544333333
No 77
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.60 E-value=0.42 Score=44.05 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q 042557 215 HEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLK 271 (545)
Q Consensus 215 ~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~ 271 (545)
.++..++..++.....+..+...|......|.+.|..++..+..|..+|.-|-++|-
T Consensus 73 ~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 73 QEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444455555566688899999999999999999999999999888877764
No 78
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.58 E-value=2.6 Score=50.30 Aligned_cols=71 Identities=27% Similarity=0.247 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557 218 GLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL 291 (545)
Q Consensus 218 ~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L 291 (545)
.++..+|+.+.+= +..+..++...+-+--|+++-++.-|+..+.++.-++...|.....+.-|+++|....
T Consensus 382 rrlt~tleelqss---s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~ 452 (1195)
T KOG4643|consen 382 RRLTGTLEELQSS---SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEET 452 (1195)
T ss_pred HHHHHHHHHHhhh---hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554332 3345555566666555667777777777777777777777766666666666665554
No 79
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.54 E-value=0.72 Score=43.39 Aligned_cols=63 Identities=24% Similarity=0.292 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 48 NNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELET 110 (545)
Q Consensus 48 lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~ 110 (545)
.-..|.++..+.+.|++++.++++++...+.....+......+.+++..+...+..+...+..
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~ 70 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQ 70 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888887777776666666655555555555555555544444444433
No 80
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=2.5 Score=49.26 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 042557 11 EEWKIRVEELEMQAEEAHKLKRSAS 35 (545)
Q Consensus 11 ~Evkkql~sLE~QAeKA~ky~elk~ 35 (545)
.||++++ .|++|+++-+..++-++
T Consensus 365 qErk~ql-ElekqLerQReiE~qrE 388 (1118)
T KOG1029|consen 365 QERKAQL-ELEKQLERQREIERQRE 388 (1118)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3444444 45666666555544443
No 81
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.48 E-value=2.4 Score=48.77 Aligned_cols=122 Identities=18% Similarity=0.193 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 85 RKHSMAKNETSEMAKTVESLKFELETVKEE---KAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLA 161 (545)
Q Consensus 85 ~eL~~~ekEl~slqkelesLkseLe~~eee---l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa 161 (545)
..|...++.+..++....+...-+..+.++ ++.+....+.+..++..+.+..-.+.++--.+...+-.+.-.-.+|.
T Consensus 122 erL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~ 201 (617)
T PF15070_consen 122 ERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQ 201 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Confidence 333444444444444433333334444433 55566666777777777777666666665444555555555556778
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 162 SALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKY 206 (545)
Q Consensus 162 ~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~ 206 (545)
..|.++...+...++++..+-.++..+..+...+-.-|.-...-|
T Consensus 202 ~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~ 246 (617)
T PF15070_consen 202 KKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAY 246 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877777777777766666564433333
No 82
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.47 E-value=2.7 Score=49.14 Aligned_cols=101 Identities=11% Similarity=0.155 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHhhh
Q 042557 7 RNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTI-------GRQKAD 79 (545)
Q Consensus 7 ~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev-------~~le~~ 79 (545)
+|-+-+.+.|++.|....-..+--.......+.-+..++....+.|+.+++..-.|.+.+..-..+| ..--..
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~ 177 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEE 177 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence 4455667778888877776665555555577777777777777777777776666555444433333 223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 80 LDESERKHSMAKNETSEMAKTVESLKFE 107 (545)
Q Consensus 80 leE~k~eL~~~ekEl~slqkelesLkse 107 (545)
|.+...++...-.+.....+.++.+...
T Consensus 178 lt~~~~q~~tkl~e~~~en~~le~k~~k 205 (1265)
T KOG0976|consen 178 LNEFNMEFQTKLAEANREKKALEEKLEK 205 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444554444444444444444333
No 83
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.43 E-value=0.56 Score=43.19 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhh
Q 042557 162 SALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQK 241 (545)
Q Consensus 162 ~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~k 241 (545)
..+..+..++..+......+...+..++.++.........|..+|... ...
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~E-------l~~---------------------- 53 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERE-------LVK---------------------- 53 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH----------------------
Confidence 345667777777778888888888888999999999999999999832 221
Q ss_pred hhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042557 242 ELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL----KEVEAEVIYMQETLGQARAESMKLKE 317 (545)
Q Consensus 242 E~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L----k~ae~e~~ea~e~~~ea~~e~~~Lk~ 317 (545)
-+..+..|..+..++..++.++..|......+... +...+... ...+.++..++.++.++..+|.-|-+
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~-------l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEINELKAEAESAKAE-------LEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334455556666666666666666665544443 44444444 45678888899999999999988866
Q ss_pred hH
Q 042557 318 SF 319 (545)
Q Consensus 318 ~l 319 (545)
.+
T Consensus 127 Ql 128 (132)
T PF07926_consen 127 QL 128 (132)
T ss_pred HH
Confidence 55
No 84
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.42 E-value=2.6 Score=48.49 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHH
Q 042557 282 EEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFL 320 (545)
Q Consensus 282 ~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~ 320 (545)
.+...-+..+..+..++..+++.++-+..+|..|+..+.
T Consensus 272 ~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls 310 (617)
T PF15070_consen 272 HEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLS 310 (617)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444444556678888899999999999999998885
No 85
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.40 E-value=1.6 Score=45.74 Aligned_cols=109 Identities=19% Similarity=0.265 Sum_probs=68.3
Q ss_pred hhhhhHHHhhHhhHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 240 QKELHLVDCVKKSEEENSSLE-------------KEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLG 306 (545)
Q Consensus 240 ~kE~~~~~~iK~~eee~~~~~-------------~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ 306 (545)
..|..||..|..+..++...+ ++++.++.....-=.+++.+.++-.+.-..|-.+-.++.+....+.
T Consensus 131 e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkead 210 (294)
T COG1340 131 EEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEAD 210 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777666655 4445555555555556666666666666666666777777777777
Q ss_pred HHHHHHHhHHHhHHhhHHHHHHHHHHHHH-------HHhhHHHHHHhHH
Q 042557 307 QARAESMKLKESFLDKETELQSVIQENEE-------LRAREADSVKKVE 348 (545)
Q Consensus 307 ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~-------Lr~~Ea~a~~~i~ 348 (545)
++..+...+.......-.++-+++.++.+ ||..+.+++....
T Consensus 211 e~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~ 259 (294)
T COG1340 211 ELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREK 259 (294)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666666666666666555554 4555555544433
No 86
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.36 E-value=1.4 Score=44.89 Aligned_cols=58 Identities=24% Similarity=0.314 Sum_probs=28.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 118 ALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEK 177 (545)
Q Consensus 118 l~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakek 177 (545)
...+-..+...|.++...+..+...+..+.. ....---.++..+|.++..-+++++.+
T Consensus 85 t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 85 TLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQRALAEAQRMLEEMRKR 142 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444555555555555555555444433 111112244666666666666666554
No 87
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.34 E-value=1.2 Score=43.92 Aligned_cols=183 Identities=22% Similarity=0.291 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557 11 EEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMA 90 (545)
Q Consensus 11 ~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ 90 (545)
.=+++++..|+-+++.+........ ..|...-..-.+....+..|..+...++-.+..+...+.+++.--...
T Consensus 7 a~lnrri~~leeele~aqErl~~a~-------~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~a 79 (205)
T KOG1003|consen 7 AALNRRIQLLEEELDRAQERLATAL-------QKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKA 79 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4468889999999999887654433 333333333344444555555555555555555666666665544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 91 KNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVE 170 (545)
Q Consensus 91 ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E 170 (545)
.+.+..--..| --++.++..+..+-....+.+..|.+++..+.+.|..+....++.-...+..-..|..++..
T Consensus 80 drK~eEVarkL-------~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdK 152 (205)
T KOG1003|consen 80 DRKYEEVARKL-------VIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDK 152 (205)
T ss_pred HHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 43333322222 22333344445555556667777777777778888777777666666666666666666666
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 171 AREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 171 ~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
++++..+...+...+..+..++++|.--|...-.+|.
T Consensus 153 LkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~ 189 (205)
T KOG1003|consen 153 LKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYE 189 (205)
T ss_pred HhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHH
Confidence 6666666666666677777888888888888887777
No 88
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=96.31 E-value=4.1 Score=49.61 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK 205 (545)
Q Consensus 160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k 205 (545)
+...+..+......++..+...+..+..++..+..+...+..+...
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 739 (1047)
T PRK10246 694 LTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQ 739 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444445555555555555555555555444433
No 89
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.27 E-value=3.1 Score=47.84 Aligned_cols=287 Identities=15% Similarity=0.144 Sum_probs=132.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 042557 44 QLEGNNDKLHDAESEIAALKEKVGLLEM-------TIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE-- 114 (545)
Q Consensus 44 eLE~lk~~LeeaesEI~~LqeKve~LE~-------ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee-- 114 (545)
.+.++...|.++...|+.|++......- ....+...|.+++..+.....--..+...+......+-.+..+
T Consensus 255 ~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe 334 (786)
T PF05483_consen 255 KIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKE 334 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455666666666777766665443221 2233444444444444443333333333333333333333322
Q ss_pred --HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 042557 115 --KAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQI 192 (545)
Q Consensus 115 --l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Ei 192 (545)
+..+..-...-+..+..+.--+..|..-|..-..+..+....+-.++..|..-+++++++-.--.....+++.++...
T Consensus 335 ~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L 414 (786)
T PF05483_consen 335 AQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKIL 414 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 222222222233344444444444444444444444554544445555555555555554433333333333333333
Q ss_pred HHHHHHHHHHH--HHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHH
Q 042557 193 EDLRIVLKATN--EKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLL 270 (545)
Q Consensus 193 e~Lq~~L~~aE--~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l 270 (545)
..-+-.|..-. .+....|..+..++..+--..+.-..+++..+......+......|+.+.-++..-+--+.+|....
T Consensus 415 ~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~ 494 (786)
T PF05483_consen 415 AEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNC 494 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221111000 1112223333344444444455555666666666666666666666665555555445555565555
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557 271 KETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI 330 (545)
Q Consensus 271 ~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~ 330 (545)
..-..+...+..+-..+-..||.....++.......-+..++..|-+.-.-+=++|.++.
T Consensus 495 nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~ 554 (786)
T PF05483_consen 495 NKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVK 554 (786)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555556655555555555555555544444443343333333333333333333
No 90
>PRK09039 hypothetical protein; Validated
Probab=96.11 E-value=1.9 Score=46.07 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhH
Q 042557 158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDE 230 (545)
Q Consensus 158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E 230 (545)
..+..+|.+......+..-.+..++.+++.+|.++..|+.+|.+++.+.. ++...|..+...++..++.
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~----~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDR----ESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34456666666677777777777777777777777777777777777653 5556666666666665433
No 91
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.11 E-value=5.6 Score=49.21 Aligned_cols=62 Identities=13% Similarity=0.289 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 53 HDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 53 eeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
..+...+...+.........+..+...+..++.........+...+..+..+...+..+...
T Consensus 472 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 533 (1201)
T PF12128_consen 472 EQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQ 533 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444555555555555555555555666666666666666655554
No 92
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.09 E-value=0.004 Score=72.08 Aligned_cols=71 Identities=27% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHhHHHHHHHHHHHHHHHHhH
Q 042557 160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATN---EKYESMLDDAKHEIGLLTNIIKEAKDE 230 (545)
Q Consensus 160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE---~k~~~~l~ea~~e~~~lkk~~E~~~~E 230 (545)
|...+-.+..++.+....+..++.+..++..++..++..+.... .+++-...=+..|++.|+..|.....|
T Consensus 355 L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e 428 (722)
T PF05557_consen 355 LTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKE 428 (722)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444446666666666677777777777777777666654332 334434444556667777666664443
No 93
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.06 E-value=1.7 Score=42.92 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=56.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 042557 45 LEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKL 124 (545)
Q Consensus 45 LE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~ 124 (545)
+..++..+.++...+..+......|..-..+....|+.....-..+-+-+..+..+|..|+..++.+.+. +..
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~-------~r~ 86 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQ-------ERE 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 3333333444444444444444333332333333332222222222333444444444444444444444 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 042557 125 AASSVQNLLEEKHKLINELENSREEEE-KSKKAMESLASALHEVSVEAREAKEKLLSSQTEHE 186 (545)
Q Consensus 125 lsseIe~L~eel~kl~~ELE~~~~eeE-kekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele 186 (545)
+.-.+.....++.++...+..+..-.+ +-=..-+.|+..|..+...+.....++..+...++
T Consensus 87 ~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 87 LERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344334444444444443322211 00001155666666666666666666666555444
No 94
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.06 E-value=3 Score=49.12 Aligned_cols=114 Identities=15% Similarity=0.242 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 95 SEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREA 174 (545)
Q Consensus 95 ~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eea 174 (545)
..+...+..+......++..+.........+..++......+..+..+|..+..--....-.+.-+...+..+...+..+
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~ 671 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDL 671 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 33444444444444444444444444444555555555555555555555444433333333333333333333333344
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 175 KEKLLSSQTEHETYEAQIEDLRIVLKATNEKYES 208 (545)
Q Consensus 175 kekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~ 208 (545)
..++..++..+..+..++..-+..-.+...+|+.
T Consensus 672 e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~ 705 (769)
T PF05911_consen 672 EAEAEELQSKISSLEEELEKERALSEELEAKCRE 705 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 4444444444444455555555555566666663
No 95
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.97 E-value=5.9 Score=48.34 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=22.2
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557 249 VKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA 296 (545)
Q Consensus 249 iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~ 296 (545)
.+-.+.++..+.++..++ -|.+.|.+++.+......=+++---+++
T Consensus 676 lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~ 721 (1317)
T KOG0612|consen 676 LKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAEN 721 (1317)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHH
Confidence 333555555555555555 4444455555555444443333333333
No 96
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.94 E-value=1.7 Score=41.79 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 5 YARNLVEEWKIRVEELEMQAEEAHKLKRSAS--------ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQ 76 (545)
Q Consensus 5 RV~DLl~Evkkql~sLE~QAeKA~ky~elk~--------lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~l 76 (545)
.-+..+..++-+.-+|..++.++..-.+.+. .++..+..+-..+...+++-+.++..|+.....--..++-+
T Consensus 3 ~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ 82 (177)
T PF13870_consen 3 QKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHV 82 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888877766665 55555666666666666667777777776666555556666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 77 KADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120 (545)
Q Consensus 77 e~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~e 120 (545)
+..+......+..+..++......+..++..+..+..++..+..
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~ 126 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRK 126 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666665555443333
No 97
>PRK09039 hypothetical protein; Validated
Probab=95.92 E-value=1.9 Score=46.04 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHH
Q 042557 159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAE 237 (545)
Q Consensus 159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~ 237 (545)
.+...+..+..++...+..+...+..+..++.+|..|+..|... +..|+.++........+++.+...+..+++.
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l----e~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAAL----EAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777777777777777777777766333 3446666666666666666666666666554
No 98
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.85 E-value=5.3 Score=46.85 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=58.5
Q ss_pred HHHHHHhHH---hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 27 AHKLKRSAS---ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVES 103 (545)
Q Consensus 27 A~ky~elk~---lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkeles 103 (545)
.+.|++-.. ..+.-...++..+...+.+++.+...||.-+..++.....-+.+|+.+..++...+++++....+|+.
T Consensus 87 triyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~ 166 (1265)
T KOG0976|consen 87 TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFM 166 (1265)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHH
Confidence 355665544 55666667777777777777777777777777777777666777777777777777777776666666
Q ss_pred HHHHHHHHH
Q 042557 104 LKFELETVK 112 (545)
Q Consensus 104 LkseLe~~e 112 (545)
.-..|+..-
T Consensus 167 ~~~~L~nk~ 175 (1265)
T KOG0976|consen 167 IGEDLHDKN 175 (1265)
T ss_pred HHHHHhhhh
Confidence 555554433
No 99
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.82 E-value=3.1 Score=47.68 Aligned_cols=186 Identities=18% Similarity=0.290 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 042557 135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAK 214 (545)
Q Consensus 135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~ 214 (545)
++..+...|+.+....+.....+..+...+..+..+..+........+.++ . ...+.-.+|-++.
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~-------~--------l~~k~~~lL~d~e 393 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL-------K--------LKKKTVELLPDAE 393 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--------HHHHHHHHhcCcH
Confidence 444444444444444444444444444444444444444443333332222 1 2222233455555
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 042557 215 HEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEV 294 (545)
Q Consensus 215 ~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~a 294 (545)
.-+..|...++.-..-+..-...|.....-++.-++.+......-..+..+....++....+.+.+..|...--..++++
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL 473 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQL 473 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555665665555555555667777777776666666655444444443344444433333333333333333333333
Q ss_pred HHHHHHHHHHHHHH--HHHHHhHHHhHHhhHHHHHHHHHHHHH
Q 042557 295 EAEVIYMQETLGQA--RAESMKLKESFLDKETELQSVIQENEE 335 (545)
Q Consensus 295 e~e~~ea~e~~~ea--~~e~~~Lk~~l~dkE~eLq~i~~Ene~ 335 (545)
..++.-....+.-- +.-......++.+..+++.-|..|.-.
T Consensus 474 ~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~ 516 (594)
T PF05667_consen 474 VKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRE 516 (594)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33332222221111 333344445555555555555555444
No 100
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.67 E-value=4.6 Score=44.80 Aligned_cols=299 Identities=16% Similarity=0.150 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 042557 52 LHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQN 131 (545)
Q Consensus 52 LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~ 131 (545)
.+....+|+.|+.+.+.|...+.... +..+.+....+..+.++...+.+.+....++.....-...-++++++|..
T Consensus 266 ~~~i~~~i~~lk~~n~~l~e~i~ea~----k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~ 341 (622)
T COG5185 266 VHIINTDIANLKTQNDNLYEKIQEAM----KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL 341 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34455555555555555443332111 11112222233334444444444444444444433333344555555655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 042557 132 LLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED----LRIVLKATNEKYE 207 (545)
Q Consensus 132 L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~----Lq~~L~~aE~k~~ 207 (545)
..+++..|....+.++.++.+-.= -....+.+-++..++-..+..+--..+.++..+.. .++..+..+..++
T Consensus 342 kEeei~~L~~~~d~L~~q~~kq~I----s~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~ 417 (622)
T COG5185 342 KEEEIKALQSNIDELHKQLRKQGI----STEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLR 417 (622)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555665555555555555543220 11222233334444444444443334444444433 2333333333333
Q ss_pred HhHHhHHHHHHHHHHHHHHHHhHh--HHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHH-----H---HHHHHHHHHHHHH
Q 042557 208 SMLDDAKHEIGLLTNIIKEAKDES--KISKAEWEQKELHLVDCVKKSEEENSSLEKEI-----N---RLVNLLKETEEDA 277 (545)
Q Consensus 208 ~~l~ea~~e~~~lkk~~E~~~~E~--e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~-----~---~l~e~l~~~E~~~ 277 (545)
-++-....|.+-...+-..-+.+ ++--...+-...|+-..|+++..++.+--... + .|-+-....+.-.
T Consensus 418 -~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i 496 (622)
T COG5185 418 -QYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDI 496 (622)
T ss_pred -HHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHH
Confidence 12333333333322222211111 11112344556777788888888876543322 1 2344444444555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH----HHhHHHhHHhhHHHHHHHHHHHHHHHhhHHH
Q 042557 278 CATKEEEAQLRDSLKEVEAEVIYMQET-----------LGQARAE----SMKLKESFLDKETELQSVIQENEELRAREAD 342 (545)
Q Consensus 278 ~~~~~E~~~lr~~Lk~ae~e~~ea~e~-----------~~ea~~e----~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~ 342 (545)
..+.+++..+-+.|-.|-+..+..++. .+-+..+ |..-+.++++.|.-+|++.=+.|.+.++=-+
T Consensus 497 ~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~ 576 (622)
T COG5185 497 NELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNR 576 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHH
Confidence 555555555555553333332222222 2222222 2233467788888888888888887776555
Q ss_pred HHHhH-HHHHHHHHHHHh
Q 042557 343 SVKKV-EELSSLLEEAMA 359 (545)
Q Consensus 343 a~~~i-~EL~~ll~ea~~ 359 (545)
.+-+| +++..++.+++.
T Consensus 577 ~r~~i~k~V~~v~~~~~~ 594 (622)
T COG5185 577 KRYKIHKQVIHVIDITSK 594 (622)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 55554 456666666654
No 101
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=6.2 Score=46.33 Aligned_cols=123 Identities=20% Similarity=0.186 Sum_probs=63.3
Q ss_pred HHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 042557 235 KAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL-------KEVEAEVIYMQETLGQ 307 (545)
Q Consensus 235 ~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L-------k~ae~e~~ea~e~~~e 307 (545)
+++-..+...+..-+++.++++..+-..+...-+++-.+..-+..+..++......| |-.-+.+.+..+.+.-
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~s 880 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISS 880 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhh
Confidence 333344455555566666666666655554444444444444444444433333322 2222222222222111
Q ss_pred --HHHHHHhHHHhHH-----hhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 042557 308 --ARAESMKLKESFL-----DKETELQSVIQENEELRAREADSVKKVEELSSLLEEA 357 (545)
Q Consensus 308 --a~~e~~~Lk~~l~-----dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea 357 (545)
+++++..|.-.+. ..+..+.++.+|+++|-+--+.-..+|.-|++.+.-.
T Consensus 881 l~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL 937 (970)
T KOG0946|consen 881 LEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDL 937 (970)
T ss_pred HHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 2334443333222 2345677888899998888888888888888777653
No 102
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.63 E-value=2.7 Score=41.97 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 124 LAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLA 161 (545)
Q Consensus 124 ~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa 161 (545)
.+...+.+|..+..++..-+..++.-++..++...+..
T Consensus 87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~ 124 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYE 124 (207)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333444444444444444444444444444443333
No 103
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.59 E-value=7.4 Score=46.64 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHH
Q 042557 296 AEVIYMQETLGQARAESMKLKESFLDKETELQSV 329 (545)
Q Consensus 296 ~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i 329 (545)
..+..++.+...+......|...+..+++.++..
T Consensus 586 ~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 586 EELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555666666666666666666666
No 104
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.56 E-value=5.8 Score=45.27 Aligned_cols=214 Identities=23% Similarity=0.259 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 042557 137 HKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEK----LLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDD 212 (545)
Q Consensus 137 ~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakek----l~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~e 212 (545)
..+..+......+++...+-+..|..++.....++-+.+.. +....+++.-+-.+++..+..+..++......-.+
T Consensus 185 ~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 185 AGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555554444 44444444444444444444444444332211111
Q ss_pred ---HHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042557 213 ---AKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRD 289 (545)
Q Consensus 213 ---a~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~ 289 (545)
+++.+... -+-...-...--++++.....-..-.+-.-.++..+++...+++...|+++.+...+.++|+.
T Consensus 265 l~~~N~~~~~~------~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~ 338 (629)
T KOG0963|consen 265 LAKANSSKKLA------KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKE 338 (629)
T ss_pred HHhhhhhhhhc------cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111000 000000001112224444333333334444566666778888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HH---HhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 042557 290 SLKEVEAEVIYMQETLGQARA-----------ES---MKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLE 355 (545)
Q Consensus 290 ~Lk~ae~e~~ea~e~~~ea~~-----------e~---~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ 355 (545)
.|+.- +.+.+.+..+.++++ ++ ..|-..|++|+.-|| .+|-.||++=......+.+++.-.+
T Consensus 339 kL~~~-sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq---~e~a~Lr~~n~~~~~~~~~~~~~~~ 414 (629)
T KOG0963|consen 339 KLNSR-SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQ---NENASLRVANSGLSGRITELSKKGE 414 (629)
T ss_pred HHhhh-ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhh---HHHHHHhccccccchhHHHHHhhhh
Confidence 99443 777777777776643 22 446667788887655 4666677776666666666666555
Q ss_pred HHHhh
Q 042557 356 EAMAK 360 (545)
Q Consensus 356 ea~~~ 360 (545)
+...+
T Consensus 415 el~~~ 419 (629)
T KOG0963|consen 415 ELEAK 419 (629)
T ss_pred hhHHH
Confidence 55443
No 105
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=3.5 Score=42.66 Aligned_cols=170 Identities=17% Similarity=0.190 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHH--
Q 042557 52 LHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE----KLA-- 125 (545)
Q Consensus 52 LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE----k~l-- 125 (545)
+....+.+..++..+..++.+|..+..+++++...+...+.++...+.++..|..+|..+++.+..-.+-. ..+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555532111111 100
Q ss_pred ----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 042557 126 ----ASSVQNLLE--EKHKLINELENSREEEEKSKKAMESLA---SALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLR 196 (545)
Q Consensus 126 ----sseIe~L~e--el~kl~~ELE~~~~eeEkekka~EeLa---~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq 196 (545)
.+=|.-+.+ -+..+..++..+..-.+--++.++.+. ..|+..+..+....+.+...+.+++.....+..-+
T Consensus 113 nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk 192 (265)
T COG3883 113 NGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQK 192 (265)
T ss_pred cCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222 344455555555555444444444433 45666666666667777777777776666666666
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHH
Q 042557 197 IVLKATNEKYESMLDDAKHEIGLLT 221 (545)
Q Consensus 197 ~~L~~aE~k~~~~l~ea~~e~~~lk 221 (545)
..++..-..+..-...+..++..|.
T Consensus 193 ~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 193 AEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6666666666655556666666666
No 106
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.50 E-value=5 Score=44.07 Aligned_cols=73 Identities=14% Similarity=0.253 Sum_probs=51.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEK 115 (545)
Q Consensus 43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel 115 (545)
.+++....+++..+..|..-+++...|++++..++.++..+...+-.....+..+.+.|..+...|..++.+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777777777777777777776666666666666666666655553
No 107
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.49 E-value=4.1 Score=43.03 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=66.3
Q ss_pred HHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 226 EAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETL 305 (545)
Q Consensus 226 ~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~ 305 (545)
....++...+..|..+=-.|.+++.+|-+=+...+.+|+++.-.....|.++..++.-.+....+|=....+.......+
T Consensus 209 ~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~ 288 (309)
T PF09728_consen 209 ETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKEL 288 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44567777888888888999999999999999999999999999998888877777777777666654444444444444
Q ss_pred HHHHHHHHh
Q 042557 306 GQARAESMK 314 (545)
Q Consensus 306 ~ea~~e~~~ 314 (545)
.-++..+..
T Consensus 289 ~~~~~k~~k 297 (309)
T PF09728_consen 289 EKLKKKIEK 297 (309)
T ss_pred HHHHHHHHH
Confidence 444333333
No 108
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.40 E-value=1.5 Score=48.80 Aligned_cols=143 Identities=20% Similarity=0.165 Sum_probs=102.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 41 VMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALN 120 (545)
Q Consensus 41 ~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~e 120 (545)
+...++-++..|..+..++..|.-+.-.|..+-......- .+.++-+.++++.....+.++..+|...-.++....+
T Consensus 157 ~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~ke---q~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~E 233 (596)
T KOG4360|consen 157 QRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKE---QQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQE 233 (596)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355777888888888888888888777766443333222 2334567788888888888888888888888887888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 042557 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHE 186 (545)
Q Consensus 121 kEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele 186 (545)
....+-++|.++..++.-+.++-+....-+-..+-+.+.+++.+++++...-+.-+-+...+.+|.
T Consensus 234 e~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 234 ENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999988887777777777777777776665554444444444443333
No 109
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.39 E-value=4.6 Score=42.93 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=94.7
Q ss_pred HhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHHH
Q 042557 35 SESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKA--------------DLDESERKHSMAKNETSEMAKT 100 (545)
Q Consensus 35 ~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~--------------~leE~k~eL~~~ekEl~slqke 100 (545)
..-|.....+|+.++..-.....-+..|+.+...+.+.+..+.. .-..+-.-|.........++.+
T Consensus 8 ~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~E 87 (319)
T PF09789_consen 8 SEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEE 87 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 34455566667777666666666677777776666665554441 2223344556666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 101 VESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLS 180 (545)
Q Consensus 101 lesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~ 180 (545)
|..|+.+|..++.++.-+-.+.......-.. .......++-+.+..++++.+.....|.-.+..+-.+.+++......
T Consensus 88 v~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~--~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~ 165 (319)
T PF09789_consen 88 VEELRQKLNEAQGDIKLLREKLARQRVGDEG--IGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDA 165 (319)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhhhhhhcc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776644232222222111111 11112226666677777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHH
Q 042557 181 SQTEHETYEAQIED 194 (545)
Q Consensus 181 ~Q~Ele~~r~Eie~ 194 (545)
++.....+..|+.-
T Consensus 166 yk~K~~RLN~ELn~ 179 (319)
T PF09789_consen 166 YKCKAHRLNHELNY 179 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766666544
No 110
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.37 E-value=8.7 Score=46.05 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=58.6
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 36 ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 36 lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
.||.-+.+.++........+...++.+..++......+..+...+...+.+...++..+......|..++..+..+...
T Consensus 685 ~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~ 763 (1200)
T KOG0964|consen 685 ESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQ 763 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777777777777777777777777777777777777777777777777777777777777665
No 111
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.32 E-value=2.6 Score=39.71 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 90 AKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 90 ~ekEl~slqkelesLkseLe~~eee 114 (545)
++.+..++..-|.+|..+|+.++..
T Consensus 15 ~~~e~dsle~~v~~LEreLe~~q~~ 39 (140)
T PF10473_consen 15 SESEKDSLEDHVESLERELEMSQEN 39 (140)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444333
No 112
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.31 E-value=4.8 Score=42.75 Aligned_cols=208 Identities=19% Similarity=0.173 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHH
Q 042557 123 KLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAK-----EKLLSSQTEHETYEAQIEDLRI 197 (545)
Q Consensus 123 k~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeak-----ekl~~~Q~Ele~~r~Eie~Lq~ 197 (545)
..++.-+.+..++...+..++..++..+...++.+--|...+........... .....+=..++.++..+..|+.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~ 147 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLER 147 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555554444444444332221111 1222222344555666666555
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhh----------hhhHHHhhHhhHHHHHHHHHHHHHHH
Q 042557 198 VLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQK----------ELHLVDCVKKSEEENSSLEKEINRLV 267 (545)
Q Consensus 198 ~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~k----------E~~~~~~iK~~eee~~~~~~e~~~l~ 267 (545)
-+...-+- ..++..|.+.+++++.|+-.|+--.+.+-..+ +.-+-..|+..++|...++.-+.+..
T Consensus 148 d~qs~lDE----keEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 148 DLQSLLDE----KEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444333 33567899999999999999996666444333 22233344444444444444444444
Q ss_pred HHHHHHHHHHhhhH-H---HHHHHHHHH--HHHHHHH---------HHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHH
Q 042557 268 NLLKETEEDACATK-E---EEAQLRDSL--KEVEAEV---------IYMQETLGQARAESMKLKESFLDKETELQSVIQE 332 (545)
Q Consensus 268 e~l~~~E~~~~~~~-~---E~~~lr~~L--k~ae~e~---------~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~E 332 (545)
..+-. +.-..+. - ....+-+.| ||+..-+ ...-.++.++++-...|-+.+-||=-+|+--.+=
T Consensus 224 ~~le~--k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~indK~~al~Hqr~t 301 (319)
T PF09789_consen 224 SALER--KRKKGIIKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETINDKNLALQHQRKT 301 (319)
T ss_pred HHHHh--hccccccccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33321 0101000 0 000011111 4444322 1223478899999999999999999999988888
Q ss_pred HHHH
Q 042557 333 NEEL 336 (545)
Q Consensus 333 ne~L 336 (545)
|--|
T Consensus 302 NkIL 305 (319)
T PF09789_consen 302 NKIL 305 (319)
T ss_pred HHHH
Confidence 8774
No 113
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.24 E-value=0.31 Score=56.68 Aligned_cols=55 Identities=27% Similarity=0.290 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhHHHhHHhhHHH------------HHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 042557 301 MQETLGQARAESMKLKESFLDKETE------------LQSVIQENEELRAREADSVKKVEELSSLLE 355 (545)
Q Consensus 301 a~e~~~ea~~e~~~Lk~~l~dkE~e------------Lq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ 355 (545)
....+..++++|..|...+..++.. +.....|...|+.-=+.+.+++.-|+-+..
T Consensus 564 k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~ 630 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFK 630 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888544321 234455666677766677777777776665
No 114
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.22 E-value=5.1 Score=42.55 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 042557 252 SEEENSSLEKEINRLVNLL 270 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l 270 (545)
...++..++..+..+...+
T Consensus 251 ~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 251 AQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444433
No 115
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.21 E-value=4.2 Score=41.51 Aligned_cols=126 Identities=16% Similarity=0.208 Sum_probs=59.8
Q ss_pred hHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 229 DESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLK----ETEEDACATKEEEAQLRDSLKEVEAEVIYMQET 304 (545)
Q Consensus 229 ~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~----~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~ 304 (545)
.+++..+.+-..+ .|..+-...+.|+..++.=+++....+. ..+..+..+++-.......|..+..-+++|...
T Consensus 130 ~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~ 207 (264)
T PF06008_consen 130 AEAQRMLEEMRKR--DFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNK 207 (264)
T ss_pred HHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344443333 3555555555555555554444444432 122222233333444444444444444555555
Q ss_pred HHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 042557 305 LGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEE 356 (545)
Q Consensus 305 ~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~e 356 (545)
..++..-|..-...+.+...-.+.|...+..+...=..|...+.....++..
T Consensus 208 ~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~~ll~~ 259 (264)
T PF06008_consen 208 TREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQANDLLQE 259 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555444444444445555555543
No 116
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.21 E-value=7 Score=44.03 Aligned_cols=197 Identities=23% Similarity=0.301 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHH
Q 042557 159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK-YESMLDDAKHEIGLLTNIIKEAKDESKISKAE 237 (545)
Q Consensus 159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k-~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~ 237 (545)
++=..|..+....+....+==.. .--++.+++.+|.-.|.....- -+..||+|+.++.-+-..++.+=.-++.-..+
T Consensus 226 ~lP~ql~~Lk~Gyr~m~~~gY~l--~~~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA 303 (570)
T COG4477 226 ELPGQLQDLKAGYRDMKEEGYHL--EHVNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEA 303 (570)
T ss_pred hchHHHHHHHHHHHHHHHccCCc--ccccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554431111 1123344455544444322221 13346666666655555555544444433332
Q ss_pred HHh---hhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 238 WEQ---KELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATK---EEEAQLRDSLKEVEAEVIYMQETLGQARAE 311 (545)
Q Consensus 238 ~~~---kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~---~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e 311 (545)
-+. +=..+-..+.+..+.+.-++.+++.+..++..+|.++...+ .+...+...+-.+-.....-.-+-.++...
T Consensus 304 ~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~ 383 (570)
T COG4477 304 KNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDN 383 (570)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 222 22334567788889999999999999999999999876554 455555555544444444444444555555
Q ss_pred HHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 042557 312 SMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEA 357 (545)
Q Consensus 312 ~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea 357 (545)
...|...|.+.+..--.++..+-.||-=|..|+....-+.+-+.+.
T Consensus 384 l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 384 LEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666678888888887777666666554
No 117
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.21 E-value=7.9 Score=44.64 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=48.0
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHH
Q 042557 247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETEL 326 (545)
Q Consensus 247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eL 326 (545)
+.+..+-.++..+..+++.+...++.+. ..+....+...+..+..++..++..++....+...++..+...+..+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~-----~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIP-----SEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444321 12455666666677777777777777776666666776666666666
Q ss_pred HHHHHHHHH
Q 042557 327 QSVIQENEE 335 (545)
Q Consensus 327 q~i~~Ene~ 335 (545)
..+......
T Consensus 466 ~~~~~~~~~ 474 (650)
T TIGR03185 466 DEKTKQKIN 474 (650)
T ss_pred HHHHHHHHh
Confidence 655544443
No 118
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.09 E-value=11 Score=45.46 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=25.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKF 106 (545)
Q Consensus 43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLks 106 (545)
..+..+.....-...+++.|+..+..|..+.+.+...++-....-...+-+-.+++.+.+.|.+
T Consensus 308 qkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts 371 (1195)
T KOG4643|consen 308 QKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS 371 (1195)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh
Confidence 3333333333333333444444433333333333333333222222223334455555555555
No 119
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=95.08 E-value=3.2 Score=48.05 Aligned_cols=158 Identities=13% Similarity=0.143 Sum_probs=110.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 39 DAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQA 118 (545)
Q Consensus 39 ~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el 118 (545)
-.+...+....-++..+...+..|+..+....+.-...+..+......|...+.+.-.-......|...|..-...+.+.
T Consensus 31 ~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~ 110 (916)
T KOG0249|consen 31 PELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQN 110 (916)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchh
Confidence 45667777778888888888999999998888877778888888888888888887777777777777777766667766
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 042557 119 LNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIV 198 (545)
Q Consensus 119 ~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~ 198 (545)
.++...+...++-+..++..... .+.+ .++.+.|..--+++.-+++.......-+..+..+++++.+.
T Consensus 111 eekn~slqerLelaE~~l~qs~r-ae~l-----------peveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~nae 178 (916)
T KOG0249|consen 111 EEKNRSLQERLELAEPKLQQSLR-AETL-----------PEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAE 178 (916)
T ss_pred HHhhhhhhHHHHHhhHhhHhHHh-hhhh-----------hhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 67667777766666666555444 3333 33333333434444444555555555666777778888888
Q ss_pred HHHHHHHHHH
Q 042557 199 LKATNEKYES 208 (545)
Q Consensus 199 L~~aE~k~~~ 208 (545)
|..|..+.+.
T Consensus 179 L~rarqreem 188 (916)
T KOG0249|consen 179 LQRARQREKM 188 (916)
T ss_pred HHHHHHHHHh
Confidence 8888877663
No 120
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.95 E-value=0.0068 Score=70.11 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 042557 39 DAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLD 81 (545)
Q Consensus 39 ~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~le 81 (545)
..+..+++.++..+.++......+..++..+++++..++...+
T Consensus 242 ~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~ 284 (713)
T PF05622_consen 242 ADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENE 284 (713)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544444454454455554444444443
No 121
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.93 E-value=15 Score=46.25 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=43.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 41 VMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKA--DLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA 116 (545)
Q Consensus 41 ~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~--~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~ 116 (545)
+..++..+...+..+..++..+..++..|..+...+.. ++..+-..+......+......+......+........
T Consensus 747 l~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~ 824 (1353)
T TIGR02680 747 LDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWK 824 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555556666666666666666666666665555543 34444455555555555555555555555555544433
No 122
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.89 E-value=9.8 Score=44.04 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHhHHHHHHHHHHHHHHHHhHhHHHH
Q 042557 160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKY----ESMLDDAKHEIGLLTNIIKEAKDESKISK 235 (545)
Q Consensus 160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~----~~~l~ea~~e~~~lkk~~E~~~~E~e~s~ 235 (545)
+..++.-+.+++...+.-+...+.-++.+....-.+++++..|.--+ +.-.++|+.+-.-|.-.|+-++--+-..-
T Consensus 521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E 600 (961)
T KOG4673|consen 521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE 600 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888888888888888888887766533 22244666666665555555443332222
Q ss_pred HHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 042557 236 AEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEE 283 (545)
Q Consensus 236 ~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E 283 (545)
-..-.+|-- ++-+|..|.--|.++|+||+.+..+
T Consensus 601 q~aarrEd~--------------~R~Ei~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 601 QQAARREDM--------------FRGEIEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222233322 2334445555555666666555544
No 123
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.87 E-value=6.2 Score=41.91 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042557 167 VSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKAT 202 (545)
Q Consensus 167 ~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~a 202 (545)
...++..++..+...+.++..++.++..++..+...
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 236 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDELQLERQQI 236 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444333
No 124
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=11 Score=44.39 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhc
Q 042557 301 MQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAKK 361 (545)
Q Consensus 301 a~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~~~~ 361 (545)
...++..-+.+|..|+-.-.+.|++=-. =.+......=.+-.+++.+|..-.++.-..+
T Consensus 890 l~ka~~~~k~~nl~lki~s~kqeqee~~--v~~~~~~~~i~alk~~l~dL~q~~eeie~e~ 948 (970)
T KOG0946|consen 890 LSKALKTVKSENLSLKIVSNKQEQEELL--VLLADQKEKIQALKEALEDLNQPVEEIEDEK 948 (970)
T ss_pred HHHHHHHhhcccchhcccchhhhHHHHH--HHHhhHHHHHHHHHHHHHHhCCChhhHHhhh
Confidence 3444555566777777777777665222 2234444444556666777777776655443
No 125
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.82 E-value=4.6 Score=39.92 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 042557 54 DAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLL 133 (545)
Q Consensus 54 eaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~ 133 (545)
++.+.|..|+-....|..++..++ ..+..++...+.+..++..|+..+..+. ++....+.+..++++|.
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~-------~~ve~~ee~na~L~~e~~~L~~q~~s~Q----qal~~aK~l~eEledLk 73 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQ-------RSVETAEEGNAQLAEEITDLRKQLKSLQ----QALQKAKALEEELEDLK 73 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 455566666665555555444444 4445555556666666666666666542 46666677777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 134 EEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAR 172 (545)
Q Consensus 134 eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~e 172 (545)
.-...+..+-..+..+-....+..-.|.+.+..+..+-.
T Consensus 74 ~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~ 112 (193)
T PF14662_consen 74 TLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENG 112 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666555555444444433333333444444444443333
No 126
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.76 E-value=12 Score=44.44 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042557 9 LVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHS 88 (545)
Q Consensus 9 Ll~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~ 88 (545)
+..|+...--.|++-...|+++..--.--+.-...++...+...++...+...|+.. ..+...-..+++.+...+.
T Consensus 338 ~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~e----laql~a~r~q~eka~~~~e 413 (980)
T KOG0980|consen 338 LSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNE----LAQLLASRTQLEKAQVLVE 413 (980)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555443322222223333333333333333333333333 3333334556666665566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557 89 MAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLE 134 (545)
Q Consensus 89 ~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~e 134 (545)
.++......+...+.++..+..+...+..++.+.....-++.--..
T Consensus 414 e~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~ 459 (980)
T KOG0980|consen 414 EAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ 459 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777777777777777766555444443333
No 127
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.76 E-value=12 Score=44.43 Aligned_cols=126 Identities=14% Similarity=0.259 Sum_probs=62.6
Q ss_pred hhHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 042557 36 ESLDAVMRQLEGNNDKLH----DAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFE---L 108 (545)
Q Consensus 36 lSL~l~t~eLE~lk~~Le----eaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkse---L 108 (545)
..+.....++.+++..+. ++..-|..++.++..++.+....+...++...+-+....++..+...-..+... +
T Consensus 333 ~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ 412 (980)
T KOG0980|consen 333 LQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLV 412 (980)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666655554 445555556666666655555444444444433333333333322222222211 2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 109 ETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLA 161 (545)
Q Consensus 109 e~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa 161 (545)
+..+.......++..++...+..+......+..-......+++....+++++.
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~ 465 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVE 465 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333333345555555566666666666666666666666666666655433
No 128
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.70 E-value=5.1 Score=39.92 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 042557 136 KHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHE 186 (545)
Q Consensus 136 l~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele 186 (545)
+..+..+++.++.++..++...+..+..+..=---=.+.++++..+|..|.
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ 183 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQ 183 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555544444444444333333455666666655554
No 129
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.34 E-value=8 Score=40.64 Aligned_cols=202 Identities=16% Similarity=0.203 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHhHH----hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 042557 18 EELEMQAEEAHKLKRSAS----ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNE 93 (545)
Q Consensus 18 ~sLE~QAeKA~ky~elk~----lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekE 93 (545)
+.+...-+...+.-++.. -.+.-+..+|..+...-.-+++...--+.....|+++|..+...|-.+-...+..+.-
T Consensus 34 ei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~s 113 (305)
T PF14915_consen 34 EILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTS 113 (305)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 344444444555555554 3445566666666666666777666666666667777766666665555555444333
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 94 TSEMAKTVESLKFEL----ETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSV 169 (545)
Q Consensus 94 l~slqkelesLkseL----e~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~ 169 (545)
-+.+.-.+..-+.+- +.+.-+++.+..+..-++.++.....+.+.+..+|-..++.+-.-.-+++.++-.|.....
T Consensus 114 krdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~ 193 (305)
T PF14915_consen 114 KRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQC 193 (305)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333222 2223336667777888999999999999999999999988887666677888888888888
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHhHHHHHHH
Q 042557 170 EAREAKEKLLSSQTEHETYEAQIEDLRIVL---KATNEKYESMLDDAKHEIGL 219 (545)
Q Consensus 170 E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L---~~aE~k~~~~l~ea~~e~~~ 219 (545)
...+++.-+..-+..+..+-..-+.+.-.| ..-..=++--|++|....+.
T Consensus 194 q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 194 QIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877777777777666655554444433 22233344445555444443
No 130
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.23 E-value=5.5 Score=38.26 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=56.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042557 43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQK-ADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNN 121 (545)
Q Consensus 43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le-~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ek 121 (545)
.+++.++..+..+..++..++.++...+.--..+. .+++.++-+.......+.....+|..|+..+...-..+....++
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keK 85 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666655554222222 45555555555555555555555555555554444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 122 EKLAASSVQNLLEEKHKLINELENSREEEEKSKKA 156 (545)
Q Consensus 122 Ek~lsseIe~L~eel~kl~~ELE~~~~eeEkekka 156 (545)
...+..++..+..++......+..++..+..++..
T Consensus 86 l~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~ 120 (177)
T PF13870_consen 86 LHFLSEELERLKQELKDREEELAKLREELYRVKKE 120 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433
No 131
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.18 E-value=6.8 Score=39.20 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 164 LHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK 205 (545)
Q Consensus 164 L~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k 205 (545)
|..++.....+..++..++.-+..++.--+.|+..+.+...+
T Consensus 85 L~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~ 126 (207)
T PF05010_consen 85 LNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEER 126 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333333333444444444444555544444444444443333
No 132
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.07 E-value=2.3 Score=44.06 Aligned_cols=61 Identities=30% Similarity=0.462 Sum_probs=45.2
Q ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 042557 10 VEEWKI--------RVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLE 70 (545)
Q Consensus 10 l~Evkk--------ql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE 70 (545)
+.||+. ++..||.|+++.++=+.-+.+-|.++..-|..-+...+.-..++..|+.....|-
T Consensus 5 ~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~ 73 (307)
T PF10481_consen 5 VEEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLM 73 (307)
T ss_pred HhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 567764 8899999999999888877777777777777777777777777776666555443
No 133
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.98 E-value=13 Score=41.76 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=30.8
Q ss_pred HHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHH
Q 042557 306 GQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEE 349 (545)
Q Consensus 306 ~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~E 349 (545)
.+...-...|.+.|.-|-+.|-.+..|.-.|+..=++....+.+
T Consensus 388 ~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 388 NELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKE 431 (511)
T ss_pred HhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence 35556667777777777777777777777777776666655554
No 134
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.95 E-value=9.6 Score=40.07 Aligned_cols=86 Identities=19% Similarity=0.319 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHH
Q 042557 258 SLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELR 337 (545)
Q Consensus 258 ~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr 337 (545)
.+...+..|.+....-=.+...+-.+..++|..-..+=.++..+...+.+..-+.-.++..+++.+..|..+....-..+
T Consensus 176 e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~ 255 (294)
T COG1340 176 EIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAK 255 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444333333344455556666777777777777788888888888888888888888888888887777765
Q ss_pred hhHHHH
Q 042557 338 AREADS 343 (545)
Q Consensus 338 ~~Ea~a 343 (545)
....+-
T Consensus 256 ~~~~~e 261 (294)
T COG1340 256 RREKRE 261 (294)
T ss_pred HHHHHH
Confidence 555544
No 135
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.93 E-value=22 Score=44.13 Aligned_cols=84 Identities=23% Similarity=0.262 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHH--HHhhHHHH
Q 042557 266 LVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEE--LRAREADS 343 (545)
Q Consensus 266 l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~--Lr~~Ea~a 343 (545)
+..++...++++..+..++.... ......+..-..+..+-+.++...+-......++.....++++.. .+.++...
T Consensus 1013 l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~ny 1090 (1294)
T KOG0962|consen 1013 LERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNY 1090 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHH
Confidence 33334444444333333333333 223334444455555555666666666666777777777777773 66666666
Q ss_pred HHhHHHHH
Q 042557 344 VKKVEELS 351 (545)
Q Consensus 344 ~~~i~EL~ 351 (545)
++.+-++.
T Consensus 1091 r~~~ie~~ 1098 (1294)
T KOG0962|consen 1091 RKALIELK 1098 (1294)
T ss_pred HHHHHHHH
Confidence 66666654
No 136
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.92 E-value=12 Score=41.16 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 042557 252 SEEENSSLEKEINRLVNLLK 271 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~ 271 (545)
+..++.++..++.+.++.-.
T Consensus 236 L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 236 LKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444444333
No 137
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.86 E-value=20 Score=43.48 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=30.7
Q ss_pred HHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 30 LKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQK 77 (545)
Q Consensus 30 y~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le 77 (545)
+++-.+-|+. +..+|+.++.....+.+..+..-.+...+..+....+
T Consensus 148 LFEEISgSiE-lK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK 194 (1141)
T KOG0018|consen 148 LFEEISGSIE-LKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAK 194 (1141)
T ss_pred HHHHHhhhhh-hhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHH
Confidence 3334444443 3467888888888888888888888777766553333
No 138
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.81 E-value=15 Score=41.73 Aligned_cols=317 Identities=20% Similarity=0.218 Sum_probs=151.9
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 042557 1 MAESYARNLVEEWKIRVEELEMQ---AEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQ- 76 (545)
Q Consensus 1 ~~e~RV~DLl~Evkkql~sLE~Q---AeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~l- 76 (545)
||++-|.++=.||++=-+.|.-= --+|-.|==.-.....-+..+|+.+...|.-+..++..+++-.....+.-...
T Consensus 5 ~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~ 84 (772)
T KOG0999|consen 5 MAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVA 84 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67888888888887644443311 11111222111134445566677777777777777777776665554422222
Q ss_pred -------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 77 -------KADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREE 149 (545)
Q Consensus 77 -------e~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~e 149 (545)
++=|+++-..-.-.=..+..++.++-.++..+..++++...+......+...-..+..+..++..+|..++-+
T Consensus 85 ~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfR 164 (772)
T KOG0999|consen 85 RDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFR 164 (772)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence 1112222111111222234445555555555555555544444444444444445555777788888888776
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHhHHH---H
Q 042557 150 EEKSKKAMESLAS---ALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL-------KATNEKYESMLDDAKH---E 216 (545)
Q Consensus 150 eEkekka~EeLa~---AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L-------~~aE~k~~~~l~ea~~---e 216 (545)
+...-..+-+|.. .|...=+-+++-.-+|..++.++..+..+++=|++.+ +-|+.-++.+|.-+.. +
T Consensus 165 E~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReq 244 (772)
T KOG0999|consen 165 EARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQ 244 (772)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6555444433321 1222112222222223333333333333333344444 3455566666655443 3
Q ss_pred HHHHHHHHHHHHhHhHHHH--------HHHH---------hhh--hhHHHhhHhhHHH--------HHHH-----HHHHH
Q 042557 217 IGLLTNIIKEAKDESKISK--------AEWE---------QKE--LHLVDCVKKSEEE--------NSSL-----EKEIN 264 (545)
Q Consensus 217 ~~~lkk~~E~~~~E~e~s~--------~~~~---------~kE--~~~~~~iK~~eee--------~~~~-----~~e~~ 264 (545)
.-.+++.+.+-++--.++. +... .-+ .| .++++... ++.+ -.++.
T Consensus 245 k~alkkEL~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~---~l~kl~~Dl~tel~~p~sDl~sel~iseiq 321 (772)
T KOG0999|consen 245 KNALKKELSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHG---ALKKLASDLFTELQGPVSDLFSELNISEIQ 321 (772)
T ss_pred HHHHHHHHHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcc---hhhhccchhhhhccCchhHHHHHHHHHHHH
Confidence 4456666666443322111 1000 000 00 01111111 1222 23447
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHhHH
Q 042557 265 RLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESM---KLKESFL 320 (545)
Q Consensus 265 ~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~---~Lk~~l~ 320 (545)
.|..+|+-.|++-..+-.-+..-...|.+-+..+.++.+++-.+..-+. +|+++.-
T Consensus 322 kLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~rlq~~~d 380 (772)
T KOG0999|consen 322 KLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRRLQDSKD 380 (772)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 7888888887776666555555555556667777777777776644433 4444443
No 139
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.75 E-value=7.9 Score=38.45 Aligned_cols=119 Identities=24% Similarity=0.332 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557 55 AESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLE 134 (545)
Q Consensus 55 aesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~e 134 (545)
+..+++.|..++..++-++.+++..+..+.+.|...++..-.--.-+ +-+......+.+
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~---------------------Kv~enr~~kdEE 60 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGM---------------------KVIENRAQKLEE 60 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHH---------------------HHHHHHHHhhHH
Confidence 35677888888888877777777777776666665554432222222 222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557 135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED 194 (545)
Q Consensus 135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~ 194 (545)
+++.+...|..++...+..-..+++.+-.|-=++..++.+.++.........++-.+...
T Consensus 61 ~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~ 120 (205)
T KOG1003|consen 61 KMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRI 120 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444333333
No 140
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.65 E-value=0.019 Score=66.45 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHH
Q 042557 280 TKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETE 325 (545)
Q Consensus 280 ~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~e 325 (545)
++..++.++.-+-.+++.+.+....+..+..++..|.+.+.-.+.+
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~e 406 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEE 406 (713)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555455555555555555555555555555554433333
No 141
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.58 E-value=6.3 Score=36.78 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 042557 161 ASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNII 224 (545)
Q Consensus 161 a~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~ 224 (545)
...+..+....+.+...+...+..+...+.++.+++..+....+.|...+..=..|+..|++.|
T Consensus 86 ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 86 ERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444445555555556666667777888888888888888888877766667777777654
No 142
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.42 E-value=11 Score=39.93 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 127 SSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAK 175 (545)
Q Consensus 127 seIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeak 175 (545)
.+|.....++..+..++..+...++.......++...+.+++.-.++-+
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444444444444444444444444555555555555443333
No 143
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.20 E-value=13 Score=39.29 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 042557 255 ENSSLEKEIN 264 (545)
Q Consensus 255 e~~~~~~e~~ 264 (545)
++..++..++
T Consensus 277 Ev~~Lk~~~~ 286 (325)
T PF08317_consen 277 EVKRLKAKVD 286 (325)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 144
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.16 E-value=6 Score=36.34 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=43.6
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557 246 VDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA 296 (545)
Q Consensus 246 ~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~ 296 (545)
..++..++.++..++..++-+++.|+.+..++..++.....|++.++.-..
T Consensus 67 ~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 67 KKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566889999999999999999999999999999999999999876544
No 145
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.12 E-value=5.7 Score=42.87 Aligned_cols=100 Identities=15% Similarity=0.254 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 82 ESERKHSMAKNETSEMAKTVESLKFELETVKEE----KAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAM 157 (545)
Q Consensus 82 E~k~eL~~~ekEl~slqkelesLkseLe~~eee----l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~ 157 (545)
+=+.++.++..-.......+...+..|..+..+ +.....+|+.+..+++.+..+......+|..++.+....-..+
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V 296 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGV 296 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334455555555555555555555555555555 3445677788888888888888777777777777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 042557 158 ESLASALHEVSVEAREAKEKLLSS 181 (545)
Q Consensus 158 EeLa~AL~E~e~E~eeakekl~~~ 181 (545)
.+++..|.+++.++++.+......
T Consensus 297 ~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 297 SERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777777777666666655544
No 146
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.97 E-value=7.2 Score=37.55 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 042557 53 HDAESEIAALKEKVGLLEMTIGRQKADLDES 83 (545)
Q Consensus 53 eeaesEI~~LqeKve~LE~ev~~le~~leE~ 83 (545)
.+.+..+..++.++..++..+..+...+...
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 147
>PRK11281 hypothetical protein; Provisional
Probab=92.61 E-value=33 Score=42.39 Aligned_cols=16 Identities=31% Similarity=0.198 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 042557 184 EHETYEAQIEDLRIVL 199 (545)
Q Consensus 184 Ele~~r~Eie~Lq~~L 199 (545)
|+..+..++.-++..|
T Consensus 200 e~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 200 EQALLNAQNDLQRKSL 215 (1113)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 148
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.48 E-value=38 Score=42.74 Aligned_cols=86 Identities=13% Similarity=0.205 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 042557 12 EWKIRVEELEMQAEEAH----KLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKH 87 (545)
Q Consensus 12 Evkkql~sLE~QAeKA~----ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL 87 (545)
+++.++..|+.....+. .|..+....+......|-.....+..+..++..+...+......+..++..+..+..++
T Consensus 234 ~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 313 (1353)
T TIGR02680 234 EYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREA 313 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433 34445555555555566666666666666666666666666555555555555555555
Q ss_pred HHHHHHHHHH
Q 042557 88 SMAKNETSEM 97 (545)
Q Consensus 88 ~~~ekEl~sl 97 (545)
...+.++..+
T Consensus 314 ~~l~~~~~~l 323 (1353)
T TIGR02680 314 DALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 149
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.33 E-value=16 Score=38.01 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=32.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 47 GNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETV 111 (545)
Q Consensus 47 ~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~ 111 (545)
.....|.++......++.++..|..+|..+...+++.+.++...+.++..++.+|..++..|..-
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444555555555555555555555555555555555555443
No 150
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.19 E-value=24 Score=39.75 Aligned_cols=81 Identities=27% Similarity=0.294 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 042557 127 SSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEV-----------SVEAREAKEKLLSSQTEHETYEAQIEDL 195 (545)
Q Consensus 127 seIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~-----------e~E~eeakekl~~~Q~Ele~~r~Eie~L 195 (545)
..+.-+...++....++..++..--..-..-+.+...|+.- +.++.+++......+.++..++.++..+
T Consensus 221 ~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l 300 (511)
T PF09787_consen 221 EQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQL 300 (511)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555433222223334444444441 1236777777777777777777777777
Q ss_pred HHHHHHHHHHHH
Q 042557 196 RIVLKATNEKYE 207 (545)
Q Consensus 196 q~~L~~aE~k~~ 207 (545)
.+-+.+.+..+.
T Consensus 301 ~~e~~d~e~~~~ 312 (511)
T PF09787_consen 301 RAELQDLEAQLE 312 (511)
T ss_pred HHHHHHHHHHHH
Confidence 777777777665
No 151
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.15 E-value=11 Score=36.25 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 77 KADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 77 e~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
..++.+.+..+....+++..++..+..+.+.+...+..
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555444444
No 152
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.12 E-value=23 Score=39.51 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=13.9
Q ss_pred HHHhHHHhHHhhHHHHHHHHH
Q 042557 311 ESMKLKESFLDKETELQSVIQ 331 (545)
Q Consensus 311 e~~~Lk~~l~dkE~eLq~i~~ 331 (545)
--....+++.|.+++|+....
T Consensus 595 fk~~IQssledl~~~l~k~~~ 615 (622)
T COG5185 595 FKINIQSSLEDLENELGKVIE 615 (622)
T ss_pred hhhhHHhhHHHHHHHHHHHHH
Confidence 334566777788887776543
No 153
>PF13514 AAA_27: AAA domain
Probab=92.08 E-value=37 Score=41.77 Aligned_cols=51 Identities=29% Similarity=0.321 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 042557 163 ALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDA 213 (545)
Q Consensus 163 AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea 213 (545)
.|...-...+.....+...+..+..++.++..+...+...+..+..++..+
T Consensus 788 ~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a 838 (1111)
T PF13514_consen 788 ALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQA 838 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333444444555566666666667777777777766666666555433
No 154
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.00 E-value=14 Score=36.66 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 042557 189 EAQIEDLRIVLKATNEKYESMLDDAKH 215 (545)
Q Consensus 189 r~Eie~Lq~~L~~aE~k~~~~l~ea~~ 215 (545)
...+..|...|+..++.+..++-.+.-
T Consensus 149 EkKl~~l~~~lE~keaqL~evl~~~nl 175 (201)
T PF13851_consen 149 EKKLQALSEQLEKKEAQLNEVLAAANL 175 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344445555665666655555555443
No 155
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.88 E-value=35 Score=41.03 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 042557 3 ESYARNLVEEWKIRVEELEMQAE 25 (545)
Q Consensus 3 e~RV~DLl~Evkkql~sLE~QAe 25 (545)
..++.+++.+++.++..|+.++.
T Consensus 173 ~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 173 SELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666
No 156
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.56 E-value=15 Score=36.33 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 042557 17 VEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSE 96 (545)
Q Consensus 17 l~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~s 96 (545)
+++|..+....++-.....--+.-...+-..+..-|..+..++..|+.++..+++ -+..+..++..+...++++..
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k----dK~~L~~~k~rl~~~ek~l~~ 104 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK----DKQSLQNLKARLKELEKELKD 104 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444455555555555555555555555554443 333444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557 97 MAKTVESLKFELETVKEEKAQALNNE 122 (545)
Q Consensus 97 lqkelesLkseLe~~eeel~el~ekE 122 (545)
+.++-+.|...+..+..+...+..+-
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544444443
No 157
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.56 E-value=1.9 Score=42.14 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=20.3
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 37 SLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFEL 108 (545)
Q Consensus 37 SL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseL 108 (545)
.|...+..+..+...+......|..|+..+..|...+..+...+.+....+..+..|+..++-.+..+..++
T Consensus 96 ~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 96 QLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333333333333333
No 158
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.51 E-value=26 Score=38.76 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=5.8
Q ss_pred HHhhhhhhHHHHHHHH
Q 042557 44 QLEGNNDKLHDAESEI 59 (545)
Q Consensus 44 eLE~lk~~LeeaesEI 59 (545)
++..++..|..++..+
T Consensus 169 ql~~~~~~L~~ae~~l 184 (498)
T TIGR03007 169 QIKTYEKKLEAAENRL 184 (498)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 159
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=91.43 E-value=29 Score=39.28 Aligned_cols=205 Identities=20% Similarity=0.195 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------------HHHHHHH
Q 042557 77 KADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKH------------KLINELE 144 (545)
Q Consensus 77 e~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~------------kl~~ELE 144 (545)
..+.-++...|..+++.+-.++.-+..+.+=+..++..+= .++.+|..-.. .+..+++
T Consensus 189 ~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP----------~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~ 258 (570)
T COG4477 189 SGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELP----------GQLQDLKAGYRDMKEEGYHLEHVNIDSRLE 258 (570)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch----------HHHHHHHHHHHHHHHccCCcccccHHHHHH
Confidence 4556677777888888888888777777777766666521 22222222111 1223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 042557 145 NSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHE---TYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLT 221 (545)
Q Consensus 145 ~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele---~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lk 221 (545)
.++.++.....-+. ...|.+++.+...+.+++..+-.=++ .++..+..+...|-..=.|.+.+..--..+|.+++
T Consensus 259 ~L~~~l~~~~~~l~--~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~ 336 (570)
T COG4477 259 RLKEQLVENSELLT--QLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVK 336 (570)
T ss_pred HHHHHHHHHHhHHH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332221111 24456666666666666665543332 23334444444444443444444444444444444
Q ss_pred HHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 042557 222 NIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYM 301 (545)
Q Consensus 222 k~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea 301 (545)
.++ .=.|.++ ..+++++.++.++...++.+.+.+..-+-.-..+++..+.++..|...+.+-..+
T Consensus 337 ~sY--------------~l~e~e~-~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~ 401 (570)
T COG4477 337 ESY--------------RLAETEL-GSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKV 401 (570)
T ss_pred HHh--------------ccChhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 443 3333333 2677888888888888765555555444444444444555555554444444444
Q ss_pred HHHHHHH
Q 042557 302 QETLGQA 308 (545)
Q Consensus 302 ~e~~~ea 308 (545)
++.+.-+
T Consensus 402 ~e~L~~L 408 (570)
T COG4477 402 QEHLTSL 408 (570)
T ss_pred HHHHHHH
Confidence 4444443
No 160
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.40 E-value=26 Score=38.68 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=16.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 042557 41 VMRQLEGNNDKLHDAESEIAALKEKVGLLEMT 72 (545)
Q Consensus 41 ~t~eLE~lk~~LeeaesEI~~LqeKve~LE~e 72 (545)
...++..+...+..+..++..++.++..+...
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~ 233 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDALKRQ 233 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555443
No 161
>PF13514 AAA_27: AAA domain
Probab=91.22 E-value=45 Score=41.04 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 042557 324 TELQSVIQEN 333 (545)
Q Consensus 324 ~eLq~i~~En 333 (545)
.+|.....++
T Consensus 947 a~l~~~~~~~ 956 (1111)
T PF13514_consen 947 AELEELAEEW 956 (1111)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 162
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.63 E-value=14 Score=34.03 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 166 EVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 166 E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
.+..++.+...++..+=.-+...-.+++.|++-+.+-..-|+
T Consensus 72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555544455555566666666666555555
No 163
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.62 E-value=4.9 Score=42.50 Aligned_cols=78 Identities=24% Similarity=0.357 Sum_probs=29.8
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 042557 206 YESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEA 285 (545)
Q Consensus 206 ~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~ 285 (545)
++..++.+..|.+.+..-+..+. .....-..+.....++..+..+-.++...|...|.+...+..|..
T Consensus 14 l~~~~~~~~~E~~~Y~~fL~~l~------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 14 LDKQLEQAEKERDTYQEFLKKLE------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp ----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666665555543 111222334556777777777777777777766666555555555
Q ss_pred HHHHHHHHHH
Q 042557 286 QLRDSLKEVE 295 (545)
Q Consensus 286 ~lr~~Lk~ae 295 (545)
.|...+....
T Consensus 82 ~le~e~~~l~ 91 (314)
T PF04111_consen 82 ELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444433
No 164
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.61 E-value=48 Score=40.25 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=10.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHH
Q 042557 45 LEGNNDKLHDAESEIAALKEKVGL 68 (545)
Q Consensus 45 LE~lk~~LeeaesEI~~LqeKve~ 68 (545)
|-..+..|.++...-..|.+....
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~ 199 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTT 199 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 165
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.57 E-value=3.2 Score=41.38 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=46.6
Q ss_pred HHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557 234 SKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL 291 (545)
Q Consensus 234 s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L 291 (545)
....|+.+-.++...+..+...+..++.++.+|..++..+..++..+..++..+++..
T Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 112 IDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777788888888888888888999999998888888888888888888777655
No 166
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.42 E-value=31 Score=37.75 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 100 TVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLL 179 (545)
Q Consensus 100 elesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~ 179 (545)
++.....+-+.++.+...+..+..++..++..++.+...+..+|..+..+.-........|.+.-+++...+.+.+.+..
T Consensus 110 El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~ 189 (499)
T COG4372 110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVL 189 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555566677777777778888888888888888888777666555554445555555555555555555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 042557 180 SSQTEHETYEAQIEDLRIVLKATN 203 (545)
Q Consensus 180 ~~Q~Ele~~r~Eie~Lq~~L~~aE 203 (545)
++...-..+..+...|...-..++
T Consensus 190 ~L~~r~~~ieQ~~~~la~r~~a~q 213 (499)
T COG4372 190 DLKLRSAQIEQEAQNLATRANAAQ 213 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444444444444333333
No 167
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.10 E-value=36 Score=40.16 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042557 13 WKIRVEELEMQAEEAHKL 30 (545)
Q Consensus 13 vkkql~sLE~QAeKA~ky 30 (545)
.+++++.|.-|+..-++.
T Consensus 399 LrRrLrilnqqlreqe~~ 416 (861)
T PF15254_consen 399 LRRRLRILNQQLREQEKA 416 (861)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345555555555444333
No 168
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.78 E-value=3.6 Score=41.64 Aligned_cols=64 Identities=27% Similarity=0.306 Sum_probs=55.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557 275 EDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRA 338 (545)
Q Consensus 275 ~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~ 338 (545)
..++.+..|++.|+.-|...++++++.++++..+..++++|.+.+..+..+...+..-.++|--
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 3445778899999999999999999999999999999999999999988887777766666543
No 169
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.66 E-value=8.1 Score=40.86 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
+.+...|..++.+.......-...-.....+..+..+..-.+...+..|.
T Consensus 74 ~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 74 EELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333334444444444444444444444433
No 170
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.56 E-value=31 Score=36.50 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 56 ESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVES 103 (545)
Q Consensus 56 esEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkeles 103 (545)
...++.|..+...+..+..++..++......+..+.++...++.++..
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k 68 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSK 68 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666665555555555555554444444443
No 171
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=89.56 E-value=27 Score=38.58 Aligned_cols=160 Identities=23% Similarity=0.250 Sum_probs=89.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 72 TIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEK---LAASSVQNLLEEKHKLINELENSRE 148 (545)
Q Consensus 72 ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk---~lsseIe~L~eel~kl~~ELE~~~~ 148 (545)
.+.++-.+++. |..+++.+..+|+.++.-+.+.+++.-++-.+..+-. .+.+--+++..+.-+ .||+.+|-
T Consensus 243 hv~km~kdle~----Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--kelE~lR~ 316 (575)
T KOG4403|consen 243 HVNKMMKDLEG----LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KELEQLRV 316 (575)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HHHHHHHH
Confidence 35566666655 3467777788888888888888888777554544443 333333333333333 58888888
Q ss_pred HHHHHHHHHHHHH-----HHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Q 042557 149 EEEKSKKAMESLA-----SALH-------EVSVEAREAKEKLLSSQTEHETYEAQIEDL-------RIVLKATNEKYESM 209 (545)
Q Consensus 149 eeEkekka~EeLa-----~AL~-------E~e~E~eeakekl~~~Q~Ele~~r~Eie~L-------q~~L~~aE~k~~~~ 209 (545)
+++++.+.++.-. .||+ +++...=+ -+.+.+...|..++..++.| =.+|..|--. .
T Consensus 317 ~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~--kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgs---s 391 (575)
T KOG4403|consen 317 ALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYN--KKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGS---S 391 (575)
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHhhcchheeeeecccc---c
Confidence 8888777766521 1111 22222111 11122222233333333332 2233333222 3
Q ss_pred HHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhh
Q 042557 210 LDDAKHEIGLLTNIIKEAKDESKISKAEWEQKE 242 (545)
Q Consensus 210 l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE 242 (545)
+|+.-+-|-.+|+.+..+.+.+-+.+--|.+=|
T Consensus 392 lDdVD~kIleak~al~evtt~lrErl~RWqQIE 424 (575)
T KOG4403|consen 392 LDDVDHKILEAKSALSEVTTLLRERLHRWQQIE 424 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788888888888888888888887754
No 172
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.26 E-value=14 Score=39.82 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 96 EMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEE 150 (545)
Q Consensus 96 slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~ee 150 (545)
.+...+..+..+++.+...+..+..+.+.++.-+..++..++++..+|+..+.+.
T Consensus 263 ~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 263 YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777778888888888888888887777777764443
No 173
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.24 E-value=41 Score=39.63 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHH
Q 042557 252 SEEENSSLEKEIN 264 (545)
Q Consensus 252 ~eee~~~~~~e~~ 264 (545)
.-+++..+-.++.
T Consensus 697 ~~~~I~~~v~~ik 709 (717)
T PF10168_consen 697 QGEEIDELVKQIK 709 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444433333
No 174
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.17 E-value=54 Score=38.78 Aligned_cols=193 Identities=18% Similarity=0.196 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042557 134 EEKHKLINELENSREEEEK---SKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESML 210 (545)
Q Consensus 134 eel~kl~~ELE~~~~eeEk---ekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l 210 (545)
.++.+|..|++.+..-+=. .....-+.+.||.-+..|--++|.++-.+-.-| |.+ ++..-.-..-.-.|++
T Consensus 356 sE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqql---req-e~~~k~~~~~~~n~El-- 429 (861)
T PF15254_consen 356 SEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQL---REQ-EKAEKTSGSQDCNLEL-- 429 (861)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHH---HHH-HhhcccCCCcccchhh--
Confidence 4788889998888666532 223335566777776666666665554442222 111 1100000000000000
Q ss_pred HhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHH
Q 042557 211 DDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEI----NRLVNLLKETEEDACATKEEEAQ 286 (545)
Q Consensus 211 ~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~----~~l~e~l~~~E~~~~~~~~E~~~ 286 (545)
.-..+|-..++..-.|.-.+.+....++.++++.|-...+|++.+...+ ..|++.-+ .-..|..+
T Consensus 430 ----~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq-------~~d~e~~r 498 (861)
T PF15254_consen 430 ----FSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQ-------QFDIETTR 498 (861)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHH
Confidence 1122333344444444445555566666666666555555555444443 22222222 23345666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHH
Q 042557 287 LRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADS 343 (545)
Q Consensus 287 lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a 343 (545)
++--+.+|...+.-.+-.++.+..+|+-|.-.|+-++.++--+..=+-.|+.+-++-
T Consensus 499 ik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 499 IKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777777777888777777777777777776666677666554
No 175
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.06 E-value=53 Score=38.50 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 042557 192 IEDLRIVLKATNEKYE 207 (545)
Q Consensus 192 ie~Lq~~L~~aE~k~~ 207 (545)
+.+|+.....++.-|.
T Consensus 378 ~~~L~Re~~~~~~~Y~ 393 (754)
T TIGR01005 378 LDALQRDAAAKRQLYE 393 (754)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 176
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.98 E-value=32 Score=35.94 Aligned_cols=106 Identities=21% Similarity=0.290 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhH---HH
Q 042557 52 LHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA----QALNNE---KL 124 (545)
Q Consensus 52 LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~----el~ekE---k~ 124 (545)
+.+++.++..|++...+-.-++..+++-++..++.......++..++.+..+|....+.++.... .+.-++ .-
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~ 99 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF 99 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 34444555555554444444444555555555555555555555555555555544444433311 122222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 125 AASSVQNLLEEKHKLINELENSREEEEKSKKAM 157 (545)
Q Consensus 125 lsseIe~L~eel~kl~~ELE~~~~eeEkekka~ 157 (545)
+..++......+.++..+|..++.+++++..+.
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233333333444455555555555555555443
No 177
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=88.51 E-value=29 Score=34.76 Aligned_cols=20 Identities=10% Similarity=0.335 Sum_probs=10.9
Q ss_pred HHHHHHHHhHhHHHHHHHHh
Q 042557 221 TNIIKEAKDESKISKAEWEQ 240 (545)
Q Consensus 221 kk~~E~~~~E~e~s~~~~~~ 240 (545)
+...+....-|+.-.--|..
T Consensus 151 r~~~e~q~~~Fe~ER~~W~e 170 (202)
T PF06818_consen 151 RQRREEQRSSFEQERRTWQE 170 (202)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 34444455555556666665
No 178
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.43 E-value=37 Score=36.00 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 042557 184 EHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAK 228 (545)
Q Consensus 184 Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~ 228 (545)
.++....+...++..+.+|+..+..---=...|+..|+..+..+.
T Consensus 240 ~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 240 KIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 333334444444444445544333222234467777777666543
No 179
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.32 E-value=32 Score=35.13 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 157 MESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYES 208 (545)
Q Consensus 157 ~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~ 208 (545)
-..|...+.++...+..+.........+...++.++...+..+..+..++-.
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~ 128 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLE 128 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888888888888888788888888888888777777777543
No 180
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.21 E-value=26 Score=35.64 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 042557 160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIV 198 (545)
Q Consensus 160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~ 198 (545)
|...++.+..+.+..+..+..++.++..++.++.+++..
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444433
No 181
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=87.99 E-value=11 Score=39.84 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042557 9 LVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHS 88 (545)
Q Consensus 9 Ll~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~ 88 (545)
.+.+++..+..+|..-.+|=-...--.-....++++++.+++.|+++...+..++......-+++.+++..++.++.++.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777775444443333333367778888888888888888888888888877666666666666666655555
Q ss_pred HHHHHHHHHH
Q 042557 89 MAKNETSEMA 98 (545)
Q Consensus 89 ~~ekEl~slq 98 (545)
.+..++....
T Consensus 158 ~Lre~L~~rd 167 (302)
T PF09738_consen 158 ELREQLKQRD 167 (302)
T ss_pred HHHHHHHHHH
Confidence 5555544333
No 182
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.57 E-value=69 Score=38.06 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=44.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 042557 119 LNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAM-------ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQ 191 (545)
Q Consensus 119 ~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~-------EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~E 191 (545)
..+.+.+..++..|..+++.|...|...+-.+-..+.++ +-..+.+.++.+.+.+..+++..+--|-..+.++
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~q 515 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQ 515 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 333344444444444444444444443333333333333 3333444444444444444444444444445555
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 042557 192 IEDLRIVLKATNEKYESMLDDAKHEIGLLT 221 (545)
Q Consensus 192 ie~Lq~~L~~aE~k~~~~l~ea~~e~~~lk 221 (545)
+...+.++.....+ .+.|..+......+.
T Consensus 516 lkq~q~a~~~~~~~-~s~L~aa~~~ke~ir 544 (1118)
T KOG1029|consen 516 LKQKQSAHKETTQR-KSELEAARRKKELIR 544 (1118)
T ss_pred HHHhhhhccCcchH-HHHHHHHHHHHHHHH
Confidence 55555555444332 233444444444433
No 183
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=87.10 E-value=40 Score=34.92 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=53.0
Q ss_pred hHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhH
Q 042557 244 HLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKE 323 (545)
Q Consensus 244 ~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE 323 (545)
.|-..+-.++.+++-+.+.-+.|..-++..|.. |..|-.+-+.-.-.+.+..-+++-|..-|+=|-.-|-+||
T Consensus 88 q~y~q~s~Leddlsqt~aikeql~kyiReLEQa-------NDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke 160 (333)
T KOG1853|consen 88 QFYQQESQLEDDLSQTHAIKEQLRKYIRELEQA-------NDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKE 160 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 333344446667666666555555555533222 3333333344455566677778888888888989999999
Q ss_pred HHHHHHHHHHHH
Q 042557 324 TELQSVIQENEE 335 (545)
Q Consensus 324 ~eLq~i~~Ene~ 335 (545)
+.|.+++.=-++
T Consensus 161 ~llesvqRLkdE 172 (333)
T KOG1853|consen 161 VLLESVQRLKDE 172 (333)
T ss_pred HHHHHHHHHHHH
Confidence 998888765554
No 184
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.99 E-value=11 Score=36.81 Aligned_cols=9 Identities=33% Similarity=0.435 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 042557 166 EVSVEAREA 174 (545)
Q Consensus 166 E~e~E~eea 174 (545)
.++.+-+++
T Consensus 169 ~l~~En~~L 177 (194)
T PF08614_consen 169 KLEEENREL 177 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 185
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.99 E-value=62 Score=36.98 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=55.2
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-----------------------------------
Q 042557 247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL----------------------------------- 291 (545)
Q Consensus 247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L----------------------------------- 291 (545)
.-|.++++++.++..+-..|+..|+++...+.-...+...-+..+
T Consensus 318 seiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~rlq~~~d~kgEk~rdg~~kad~~e 397 (772)
T KOG0999|consen 318 SEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRRLQDSKDKKGEKGRDGGEKADLYE 397 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhccccccccccchhHH
Confidence 456777777777777777777777777666554444443333332
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhHHHh------HHhhHHHHHHHHHHHHHHHhhHHHH
Q 042557 292 ------KEVEAEVIYMQETLGQARAESMKLKES------FLDKETELQSVIQENEELRAREADS 343 (545)
Q Consensus 292 ------k~ae~e~~ea~e~~~ea~~e~~~Lk~~------l~dkE~eLq~i~~Ene~Lr~~Ea~a 343 (545)
....+.+..|...+..++.+...|... ....|++.|.+..- |+.-+-+.
T Consensus 398 ~~l~a~e~~a~k~~~a~~e~i~lk~ql~~l~~~~n~tde~~~~e~evq~l~~k---l~llekas 458 (772)
T KOG0999|consen 398 VDLNALEILACKYAVAVDEMIQLKDQLKALYHQLNYTDEKVQYEKEVQELVEK---LRLLEKAS 458 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH---HHHHHHhh
Confidence 113455566666666667777666655 34456666655433 55544444
No 186
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.70 E-value=51 Score=35.72 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=18.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 175 KEKLLSSQTEHETYEAQIEDLRIVLKATNE 204 (545)
Q Consensus 175 kekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~ 204 (545)
...+..++.+++-.+.-+..+-..++++..
T Consensus 341 ~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666666554
No 187
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.90 E-value=52 Score=34.99 Aligned_cols=21 Identities=29% Similarity=0.234 Sum_probs=12.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 042557 179 LSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 179 ~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
..++..+++++.+--+|..+|
T Consensus 152 ~~~q~~le~Lr~EKVdlEn~L 172 (310)
T PF09755_consen 152 SAKQEELERLRREKVDLENTL 172 (310)
T ss_pred HHhHHHHHHHHHHHHhHHHHH
Confidence 444555556666655565555
No 188
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.89 E-value=52 Score=34.99 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHH
Q 042557 279 ATKEEEAQLRDSL 291 (545)
Q Consensus 279 ~~~~E~~~lr~~L 291 (545)
.+++||-.|+..|
T Consensus 265 ~ireEN~rLqr~L 277 (310)
T PF09755_consen 265 EIREENRRLQRKL 277 (310)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555444
No 189
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.77 E-value=58 Score=36.25 Aligned_cols=107 Identities=25% Similarity=0.299 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 97 MAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKE 176 (545)
Q Consensus 97 lqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeake 176 (545)
+...+..+..+...++.+...+....+.+...+..+..+++++..+|...++.-....+-..-+...|++ .-+..+.
T Consensus 352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~---~~e~~~~ 428 (493)
T KOG0804|consen 352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKE---LEEREKE 428 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHH
Confidence 3333333333333333443334444455555666666677777777777765555555444444444444 3344445
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 177 KLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 177 kl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
....+...+..++.++.+|-.-| ++..+++
T Consensus 429 ~~~s~d~~I~dLqEQlrDlmf~l-e~qqklk 458 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLRDLMFFL-EAQQKLK 458 (493)
T ss_pred HHHHHHHHHHHHHHHHHhHheeh-hhhhhhh
Confidence 55566667777788888877777 6666654
No 190
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=85.66 E-value=65 Score=35.92 Aligned_cols=51 Identities=22% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 042557 135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEH 185 (545)
Q Consensus 135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~El 185 (545)
++.....-.+....++..+++..++|..||+-+=..--.+-+.|..+|...
T Consensus 303 dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~ 353 (488)
T PF06548_consen 303 DLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKH 353 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555666666666666666654444333444444443333
No 191
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=85.65 E-value=38 Score=33.25 Aligned_cols=86 Identities=20% Similarity=0.197 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557 263 INRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAE----SMKLKESFLDKETELQSVIQENEELRA 338 (545)
Q Consensus 263 ~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e----~~~Lk~~l~dkE~eLq~i~~Ene~Lr~ 338 (545)
+..+..+|..||.+|..+--..+-+|.++..|+.+-+.+-+.--.+..+ ++.+.. +-.-|.-+-.|+-.|..
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~----klekLe~LE~E~~rLt~ 134 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQA----KLEKLEKLEKEYLRLTA 134 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHH----HHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999998888777665444333 444443 33456677788888999
Q ss_pred hHHHHHHhHHHHHH
Q 042557 339 READSVKKVEELSS 352 (545)
Q Consensus 339 ~Ea~a~~~i~EL~~ 352 (545)
.-.-|-.+|.+|-.
T Consensus 135 ~Q~~ae~Ki~~LE~ 148 (178)
T PF14073_consen 135 TQSLAETKIKELEE 148 (178)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999853
No 192
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.42 E-value=40 Score=33.26 Aligned_cols=117 Identities=22% Similarity=0.291 Sum_probs=81.6
Q ss_pred HHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHH---HHHHHH
Q 042557 222 NIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQL-RDSL---KEVEAE 297 (545)
Q Consensus 222 k~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~l-r~~L---k~ae~e 297 (545)
..+++.+.+++..+..+...=+..+..-+.++.++..+...+..+...-..| +..-++.| |..| ...+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A------l~~g~edLAr~al~~k~~~e~~ 99 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA------LAAGREDLAREALQRKADLEEQ 99 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666666555544432 22222222 3333 567888
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 042557 298 VIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSV 344 (545)
Q Consensus 298 ~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~ 344 (545)
+......+..+......|+..+.+.+..|..+...-+.|+....+|.
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999888777655
No 193
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=85.02 E-value=51 Score=34.18 Aligned_cols=92 Identities=22% Similarity=0.282 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 91 KNETSEMAKTVESLKFELETVKEE----KAQALNNEKLAAS---SVQNLLEEKHKLINELENSREEEEKSKKAMESLASA 163 (545)
Q Consensus 91 ekEl~slqkelesLkseLe~~eee----l~el~ekEk~lss---eIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~A 163 (545)
+...+.+++..+.|+.+++..++. ..+.-..+..+.+ +....++.+.+...+|+.+.+-++.++.+ -.-.
T Consensus 58 etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRa---ti~s 134 (333)
T KOG1853|consen 58 ETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRA---TIYS 134 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh---hhhh
Confidence 333444444444454444444433 2222222333333 34445568888888888888888888855 3445
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 042557 164 LHEVSVEAREAKEKLLSSQTEH 185 (545)
Q Consensus 164 L~E~e~E~eeakekl~~~Q~El 185 (545)
|..+..-+.++-++..-+..+|
T Consensus 135 leDfeqrLnqAIErnAfLESEL 156 (333)
T KOG1853|consen 135 LEDFEQRLNQAIERNAFLESEL 156 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666555554444
No 194
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.60 E-value=35 Score=31.84 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 58 EIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVK 112 (545)
Q Consensus 58 EI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~e 112 (545)
.+..+.-.+..+...+.+++.++..+...+..++.....++..+..+...+....
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333433333333333333444444444333333333
No 195
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.69 E-value=86 Score=35.66 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=3.3
Q ss_pred CCChhhHH
Q 042557 421 GMNDETVE 428 (545)
Q Consensus 421 ~~~~~~~~ 428 (545)
++++.+..
T Consensus 474 gld~~~~~ 481 (563)
T TIGR00634 474 GVSGETAQ 481 (563)
T ss_pred CCCHHHHH
Confidence 44444333
No 196
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=83.39 E-value=1e+02 Score=36.30 Aligned_cols=165 Identities=18% Similarity=0.154 Sum_probs=74.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhh
Q 042557 173 EAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKS 252 (545)
Q Consensus 173 eakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~ 252 (545)
-...+...+-..+++.+.++..|-..+..++.+|-.+.-+- .-+.-..+++..-...+.....--.....-+...|+++
T Consensus 451 ~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~-~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~l 529 (698)
T KOG0978|consen 451 CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSER-IKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKL 529 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666667777777777766665433221 11112223333333333444444444445555666777
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHH
Q 042557 253 EEENSSLEKEINRLVNLLK-------ETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETE 325 (545)
Q Consensus 253 eee~~~~~~e~~~l~e~l~-------~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~e 325 (545)
+++...++.....+...+. ..-+.+.-+....+.|+..+...++.+..++..+.++..+..-++-.....|.+
T Consensus 530 eeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE 609 (698)
T KOG0978|consen 530 EEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEE 609 (698)
T ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666665543333333 122222223333333333333344444444444444444444444444344444
Q ss_pred HHHHHHHHHHHHh
Q 042557 326 LQSVIQENEELRA 338 (545)
Q Consensus 326 Lq~i~~Ene~Lr~ 338 (545)
+.-+...++.++.
T Consensus 610 ~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 610 LERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHhcc
Confidence 4444444444333
No 197
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=83.30 E-value=58 Score=33.41 Aligned_cols=174 Identities=11% Similarity=0.151 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHH
Q 042557 185 HETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEIN 264 (545)
Q Consensus 185 le~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~ 264 (545)
|..+=.+|..|...|.+|...|+..|.+++..+..+.++|-.-+.-+.=+..++.. ...+...+-..-..+..+..-..
T Consensus 16 LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~-a~~aq~e~q~Aa~~yerA~~~h~ 94 (239)
T PF05276_consen 16 LNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRK-AKEAQQEAQKAALQYERANSMHA 94 (239)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778889999999999999999999999999999998755444434433333 33444444444445555555556
Q ss_pred HHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHH-------
Q 042557 265 RLVNLLKETEEDACATK--EEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEE------- 335 (545)
Q Consensus 265 ~l~e~l~~~E~~~~~~~--~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~------- 335 (545)
..++.+..+|..+..-. .=.....+.|.+|-..+++|......+..+-.........-++.++.|...+--
T Consensus 95 aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrP 174 (239)
T PF05276_consen 95 AAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRP 174 (239)
T ss_pred HHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 66666666666655544 233456688899988888888888888877777777888888888887766543
Q ss_pred -------HHhhHHHHHHhHHHHHHHHHHHHh
Q 042557 336 -------LRAREADSVKKVEELSSLLEEAMA 359 (545)
Q Consensus 336 -------Lr~~Ea~a~~~i~EL~~ll~ea~~ 359 (545)
+-..=.....+|.+|..-+..|..
T Consensus 175 Yfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~ 205 (239)
T PF05276_consen 175 YFELKAKFNQQLEEQKEKVEELEAKVKQAKS 205 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222345666666666665543
No 198
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=82.70 E-value=30 Score=29.62 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 042557 150 EEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKE 226 (545)
Q Consensus 150 eEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~ 226 (545)
++.++..++.++..+........+..-++...-.|++.+|.-+-+|..+-.....+|+ .||.+|+..++.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YE-------eEI~rLr~eLe~ 75 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYE-------EEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 4455666666666666666666666677777777788888888888888878888887 889998877764
No 199
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.67 E-value=14 Score=36.87 Aligned_cols=76 Identities=12% Similarity=0.278 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHH
Q 042557 253 EEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQE 332 (545)
Q Consensus 253 eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~E 332 (545)
...+-.++.++..+.+.|...... .....+++...+.+ ++..+..+..+|.+|+..+...-+++..+.++
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~-------~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQ-------SDSVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433322 22344444444444 33334456777777777776666666666666
Q ss_pred HHHHHh
Q 042557 333 NEELRA 338 (545)
Q Consensus 333 ne~Lr~ 338 (545)
|+.++.
T Consensus 162 ~~~~~~ 167 (206)
T PRK10884 162 LDDKQR 167 (206)
T ss_pred HHHHHH
Confidence 666543
No 200
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=82.56 E-value=89 Score=35.03 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 148 EEEEKSKKAMESLASALHEVSVEAREAKEKLL 179 (545)
Q Consensus 148 ~eeEkekka~EeLa~AL~E~e~E~eeakekl~ 179 (545)
..+..++.+-+.|+..|+...+..-.+.+++.
T Consensus 404 k~LqEsr~eKetLqlelkK~k~nyv~LQEry~ 435 (527)
T PF15066_consen 404 KHLQESRNEKETLQLELKKIKANYVHLQERYM 435 (527)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33344444445555555555555554444443
No 201
>PLN02939 transferase, transferring glycosyl groups
Probab=82.45 E-value=1.3e+02 Score=36.84 Aligned_cols=180 Identities=25% Similarity=0.262 Sum_probs=105.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHH
Q 042557 178 LLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENS 257 (545)
Q Consensus 178 l~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~ 257 (545)
+...-.+-+.++.++.-|.+.|.++..+.+..- +.+.-..-+-..|+.++.|+-..-+-...-...+..-...+.+|+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (977)
T PLN02939 158 LEKILTEKEALQGKINILEMRLSETDARIKLAA-QEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENM 236 (977)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhh-hccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhH
Confidence 333344456677888888888888888877532 2333344556667777777655544433323333333333555666
Q ss_pred HHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHhHHhhHHHH-------
Q 042557 258 SLEKEINRLVN---LLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARA-ESMKLKESFLDKETEL------- 326 (545)
Q Consensus 258 ~~~~e~~~l~e---~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~-e~~~Lk~~l~dkE~eL------- 326 (545)
.++..++-|.. .+..++..+-.+--|..-|...|+.+|+.+..+++-+-.+.. +.-.|=+.+-.+..=|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQV 316 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666544433 446678888888899999999999999999888877665511 1111222111111111
Q ss_pred ---HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhccccc
Q 042557 327 ---QSVIQENEELRAREADSVKKVEELSSLLEEAMAKKQTAE 365 (545)
Q Consensus 327 ---q~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~~~~~~~~ 365 (545)
-.+-+.|.+| +++++.|...|.+|..-++..+
T Consensus 317 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 351 (977)
T PLN02939 317 EKAALVLDQNQDL-------RDKVDKLEASLKEANVSKFSSY 351 (977)
T ss_pred HHHHHHhccchHH-------HHHHHHHHHHHHHhhHhhhhHH
Confidence 1122333333 4678888888888877665543
No 202
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=82.18 E-value=1.1e+02 Score=35.89 Aligned_cols=54 Identities=33% Similarity=0.361 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 042557 219 LLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKET 273 (545)
Q Consensus 219 ~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~ 273 (545)
.+...++............-+..+..++... .-+.+.+.+..++.+|+.+.+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~ 319 (670)
T KOG0239|consen 266 LLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRVF 319 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEE
Confidence 3444444444444445555566666777677 77888888999999888888744
No 203
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.05 E-value=1e+02 Score=35.30 Aligned_cols=254 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhHHHHHHH
Q 042557 57 SEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE--------KAQALNNEKLAASS 128 (545)
Q Consensus 57 sEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee--------l~el~ekEk~lsse 128 (545)
.+...+++.+--+..++-..+..|+..++.|.+-..-+-.+-..+.+-...-...... +..+--+.+ -...
T Consensus 236 ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~-~er~ 314 (654)
T KOG4809|consen 236 AELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMK-VERI 314 (654)
T ss_pred HHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhch-HHHH
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 129 VQNLLE----EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNE 204 (545)
Q Consensus 129 Ie~L~e----el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~ 204 (545)
|..|.+ +=.....+|+..+...-..+.-+.-|+.+|.+..+.+-..++....+.........+...+..+|+.-.+
T Consensus 315 IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkE 394 (654)
T KOG4809|consen 315 IERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKE 394 (654)
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 042557 205 KYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEE 284 (545)
Q Consensus 205 k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~ 284 (545)
++- ++++...-+....+.+.. .-+|-+.|+..+.+.+..+.+.- ...++.
T Consensus 395 ec~---------------kme~qLkkAh~~~ddar~-~pe~~d~i~~le~e~~~y~de~~--------------kaqaev 444 (654)
T KOG4809|consen 395 ECS---------------KMEAQLKKAHNIEDDARM-NPEFADQIKQLEKEASYYRDECG--------------KAQAEV 444 (654)
T ss_pred HHH---------------HHHHHHHHHHHhhHhhhc-ChhhHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHH
Q 042557 285 AQLRDSLKEVEAEVIYMQETLGQA----RAESMKLKESFLDKETELQSVIQENEELRAREA 341 (545)
Q Consensus 285 ~~lr~~Lk~ae~e~~ea~e~~~ea----~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea 341 (545)
.+|-.+|++++++-++--.++.++ ..+|......+-+---++.--.+..++.|..++
T Consensus 445 drlLeilkeveneKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred 505 (654)
T KOG4809|consen 445 DRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRRED 505 (654)
T ss_pred HHHHHHHHHHHhhhccccchhhhcCchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHh
No 204
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=81.90 E-value=21 Score=33.30 Aligned_cols=113 Identities=17% Similarity=0.224 Sum_probs=65.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHH----hhhhhHHHhh
Q 042557 174 AKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWE----QKELHLVDCV 249 (545)
Q Consensus 174 akekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~----~kE~~~~~~i 249 (545)
++.-|...+.+|++...+|-+++..+..|+-- |-..+.+++..-++|- |+++-.+..- ..+.++.
T Consensus 6 a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~----~~~r~seldqA~~~~~----eae~k~~~~~a~~P~~~~~~~--- 74 (136)
T PF11570_consen 6 AERNYEAARAELDQADEDIATLQERQASAEQA----LNGRRSELDQANKKVK----EAEIKQDEFFANNPPHEYGRG--- 74 (136)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHCCCCTT-TTSSCHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH----HHHhcccccccCCCccccccH---
Confidence 44456667777777777777777777666644 3334444444444442 2333332211 1233333
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 042557 250 KKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVI 299 (545)
Q Consensus 250 K~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ 299 (545)
++..+..++.+|+.--..|.+++.++..+..++.+.+.+|-.|-....
T Consensus 75 --wqlkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rk 122 (136)
T PF11570_consen 75 --WQLKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRK 122 (136)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 457888888899888888999999999999988888888855444433
No 205
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=81.57 E-value=65 Score=32.80 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 133 LEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEK 177 (545)
Q Consensus 133 ~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakek 177 (545)
+.+++.+..-+..++.+....+....-+...+.-+..++.+.+..
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333444444444443
No 206
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=81.42 E-value=1.2e+02 Score=35.69 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557 218 GLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL 291 (545)
Q Consensus 218 ~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L 291 (545)
..+...+..+........+..-..-..+..|.+.+-..+..+......|.+.+ .-+.....+..+..+|+.++
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCc
Confidence 33333333333333333333333333333333333333333333333444444 22344456677777777766
No 207
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=80.85 E-value=70 Score=32.70 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 167 VSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNE 204 (545)
Q Consensus 167 ~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~ 204 (545)
+..++.++...+..+..+......+...|+.-|..|..
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433
No 208
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.48 E-value=1.5e+02 Score=36.27 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=58.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 39 DAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQA 118 (545)
Q Consensus 39 ~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el 118 (545)
.-+....+.++..+..+...+.-+..++..|+.++.....++......+...-..+......+......+......+..+
T Consensus 251 ~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~l 330 (1072)
T KOG0979|consen 251 NAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESL 330 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555566666555555555555555555555444444444444555555555555555
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 119 LNNEKLAASSVQNLLEEKHKLINELENS 146 (545)
Q Consensus 119 ~ekEk~lsseIe~L~eel~kl~~ELE~~ 146 (545)
+++.......|......+-.+..+|...
T Consensus 331 k~~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 331 KKAAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 5555555555665555555555555443
No 209
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.39 E-value=37 Score=35.97 Aligned_cols=80 Identities=23% Similarity=0.228 Sum_probs=59.7
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 37 SLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA 116 (545)
Q Consensus 37 SL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~ 116 (545)
|+.-....|-.+-.++..+.-..+.|......|.-+|..|+-.|++....+..+++++.....+++.++..+..+..++.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777788888888888888888888888888888888888877777777777766666555544
No 210
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.31 E-value=64 Score=37.26 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHH
Q 042557 321 DKETELQSVIQENE 334 (545)
Q Consensus 321 dkE~eLq~i~~Ene 334 (545)
.++.+|..|.+||-
T Consensus 633 ~k~~~i~riieEYR 646 (652)
T COG2433 633 QKEEDILRIIEEYR 646 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555553
No 211
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=80.17 E-value=8.9 Score=34.51 Aligned_cols=54 Identities=28% Similarity=0.392 Sum_probs=48.4
Q ss_pred hhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557 243 LHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA 296 (545)
Q Consensus 243 ~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~ 296 (545)
.++.+.|..++..+..+-.++..|...+...-.+...|+=||+.||..|.+...
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356778888999999999999999999999999999999999999999977665
No 212
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=80.09 E-value=59 Score=31.36 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 042557 47 GNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNET 94 (545)
Q Consensus 47 ~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl 94 (545)
..+..++.+..++..++.++...-.++..++...-.++..|-.+.+..
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444444444444444444444444444444444443
No 213
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=79.58 E-value=44 Score=35.05 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=12.7
Q ss_pred HhHHhHHHHHHHHHHHHHHHH
Q 042557 208 SMLDDAKHEIGLLTNIIKEAK 228 (545)
Q Consensus 208 ~~l~ea~~e~~~lkk~~E~~~ 228 (545)
.+|.+|+.||.-|+-.||.++
T Consensus 117 LALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 117 LALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666533
No 214
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=79.17 E-value=1.8e+02 Score=36.31 Aligned_cols=26 Identities=19% Similarity=0.380 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 180 SSQTEHETYEAQIEDLRIVLKATNEK 205 (545)
Q Consensus 180 ~~Q~Ele~~r~Eie~Lq~~L~~aE~k 205 (545)
..+++...+..++..++..+..+..+
T Consensus 177 ~lqae~~~l~~~~~~l~~~l~s~~~~ 202 (1109)
T PRK10929 177 ALQAESAALKALVDELELAQLSANNR 202 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34445555555666666666544444
No 215
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=78.78 E-value=44 Score=29.20 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042557 92 NETSEMAKTVESLKFEL 108 (545)
Q Consensus 92 kEl~slqkelesLkseL 108 (545)
++++...+....|..++
T Consensus 45 qkyfa~mr~~d~l~~e~ 61 (96)
T PF08647_consen 45 QKYFAAMRSKDALDNEM 61 (96)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 33333333333333333
No 216
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=77.98 E-value=68 Score=30.91 Aligned_cols=131 Identities=15% Similarity=0.238 Sum_probs=68.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 75 RQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE-KLAASSVQNLLEEKHKLINELENSREEEEKS 153 (545)
Q Consensus 75 ~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE-k~lsseIe~L~eel~kl~~ELE~~~~eeEke 153 (545)
....+++.++.+|..+..++...-.++..|..........+...-.+- .-...+|...=+....+.-.|-..+.++...
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qL 103 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQL 103 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555544444444433222221 1223344444445555555555555666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 154 KKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK 205 (545)
Q Consensus 154 kka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k 205 (545)
+..-++|...|..+..-++.+..=....-.-++-+..++..+-..|.++..+
T Consensus 104 r~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 104 RERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6555666666666666666665555555555555566666555555555444
No 217
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=77.76 E-value=76 Score=31.55 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=49.5
Q ss_pred HhhhHHHHHHHHHHH----------HH-HHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHH
Q 042557 277 ACATKEEEAQLRDSL----------KE-VEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVK 345 (545)
Q Consensus 277 ~~~~~~E~~~lr~~L----------k~-ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~ 345 (545)
.+-++++|.+||+.. +. +-.=-..-.=++..++.++..-...|..+|.-.+.+..||-+||
T Consensus 64 NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLK-------- 135 (195)
T PF10226_consen 64 NQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELK-------- 135 (195)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------
Confidence 345567777777766 11 22222233446777889999999999999999999999998864
Q ss_pred hHHHHHHHHHHH
Q 042557 346 KVEELSSLLEEA 357 (545)
Q Consensus 346 ~i~EL~~ll~ea 357 (545)
||--+|++=
T Consensus 136 ---Elcl~LDee 144 (195)
T PF10226_consen 136 ---ELCLYLDEE 144 (195)
T ss_pred ---HHHHHHhcc
Confidence 677777764
No 218
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=76.89 E-value=98 Score=32.16 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhH
Q 042557 191 QIEDLRIVLKATNEKYESMLDDA 213 (545)
Q Consensus 191 Eie~Lq~~L~~aE~k~~~~l~ea 213 (545)
+|..|..-|....+..+..+++-
T Consensus 121 qIa~L~rqlq~lk~~qqdEldel 143 (258)
T PF15397_consen 121 QIANLVRQLQQLKDSQQDELDEL 143 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444443
No 219
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.76 E-value=40 Score=38.82 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHhHH-----hhHHHHHHHH
Q 042557 11 EEWKIRVEELEMQAEEA---HKLKRSAS-----ESLDAVMRQL 45 (545)
Q Consensus 11 ~Evkkql~sLE~QAeKA---~ky~elk~-----lSL~l~t~eL 45 (545)
.+++.++..+|+.+..- ..-...+. .+|.-+-..+
T Consensus 355 ~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~ 397 (652)
T COG2433 355 LAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKV 397 (652)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHHHH
Confidence 35566666666665555 44444444 5555444333
No 220
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.69 E-value=81 Score=31.09 Aligned_cols=41 Identities=7% Similarity=0.153 Sum_probs=15.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 74 GRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 74 ~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
......+..++..+..+-.....+...+..+...+......
T Consensus 33 rd~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 33 RDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333344444444333333
No 221
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=76.42 E-value=2e+02 Score=35.46 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=13.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 250 KKSEEENSSLEKEINRLVNLLKETEE 275 (545)
Q Consensus 250 K~~eee~~~~~~e~~~l~e~l~~~E~ 275 (545)
.....++..++..+..+...+.....
T Consensus 773 ~~~~~~~~~l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 773 LLDEETLTQLEQLKQNLENQRQQAQT 798 (1047)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444433
No 222
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=76.20 E-value=40 Score=28.01 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 042557 58 EIAALKEKVGLLEM 71 (545)
Q Consensus 58 EI~~LqeKve~LE~ 71 (545)
++.+|+.++..+..
T Consensus 6 ~~~~Lr~rLd~~~r 19 (69)
T PF14197_consen 6 EIATLRNRLDSLTR 19 (69)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344443333333
No 223
>PF15294 Leu_zip: Leucine zipper
Probab=76.18 E-value=1.1e+02 Score=32.24 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557 90 AKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLE 134 (545)
Q Consensus 90 ~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~e 134 (545)
..+++..++.+...|+..+..++..-..+..-...+...|..+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777777776655444444555555555544
No 224
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.98 E-value=46 Score=28.02 Aligned_cols=56 Identities=27% Similarity=0.274 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 61 ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA 116 (545)
Q Consensus 61 ~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~ 116 (545)
.|..++...-.+|.-++-++++++..-....++.+..+...+.|..+-+.+++++.
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666666666555555555555555444433
No 225
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=75.75 E-value=14 Score=33.52 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.3
Q ss_pred hhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 042557 243 LHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEV 294 (545)
Q Consensus 243 ~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~a 294 (545)
.++.+.+..++..+..+-.++..|...+...-.+...|+-||..||..|.+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778889999999999999999999999999999999999999999765
No 226
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.55 E-value=47 Score=27.85 Aligned_cols=45 Identities=29% Similarity=0.321 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 61 ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLK 105 (545)
Q Consensus 61 ~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLk 105 (545)
.|..+|..+-.+|..|+.++++++........+...+..+...|+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333333343333333
No 227
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=75.49 E-value=2.3e+02 Score=35.73 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=13.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 042557 40 AVMRQLEGNNDKLHDAESEIAALKEKVGLLEM 71 (545)
Q Consensus 40 l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ 71 (545)
+....+......|......+..+.........
T Consensus 737 l~~~~i~e~~~~l~~~~~el~~~~~~~e~~~~ 768 (1294)
T KOG0962|consen 737 LIDKEIPELEKELQEVYEELGDLSEEEEDDEK 768 (1294)
T ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 33334444444444444444444444433333
No 228
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=75.37 E-value=79 Score=30.32 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=54.4
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 205 KYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEE 275 (545)
Q Consensus 205 k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~ 275 (545)
-++.+-|=.+.++.-++++++..-.++.-.-..|..+|.++-.++..+.+-...--.=+.+|++.+...|+
T Consensus 74 eLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~ 144 (159)
T PF04949_consen 74 ELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESER 144 (159)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777789999999999999999998888999999998888877777665555555666666664443
No 229
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=75.30 E-value=99 Score=31.40 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=58.7
Q ss_pred HHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHH
Q 042557 222 NIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL----KEVEAE 297 (545)
Q Consensus 222 k~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L----k~ae~e 297 (545)
+.|++.+.+++..+......=+.++..-+.++-++..++..+.++...-..| +..-++.|-... ..++..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~A------l~~g~E~LAr~al~~~~~le~~ 100 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELA------LQAGNEDLAREALEEKQSLEDL 100 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHH
Confidence 4455544455555554444444455555555555555555555444333321 222222222211 344555
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHH
Q 042557 298 VIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREA 341 (545)
Q Consensus 298 ~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea 341 (545)
+......+..+......|+..+..+++-+..+.+..+.|+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 101 AKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666666666666666666544443
No 230
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=74.80 E-value=92 Score=30.82 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 82 ESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLA 161 (545)
Q Consensus 82 E~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa 161 (545)
....-++.++.+++..+.-|......|...+.... .+..-.......++.+..=|..++..+..........+
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~-------aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ 136 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQ-------AAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQ 136 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555444444444444433322 22222333333344444444444444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 042557 162 SALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRI 197 (545)
Q Consensus 162 ~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~ 197 (545)
..|.+-..-+..++.++..+..-|..+|.+++..+.
T Consensus 137 ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 137 QELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555443
No 231
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=74.72 E-value=93 Score=30.81 Aligned_cols=107 Identities=18% Similarity=0.254 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 042557 8 NLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKH 87 (545)
Q Consensus 8 DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL 87 (545)
.|+..++..++..+.-+..-..+.....-.+..+..-.......+..+..-+...+..+..++..+.....++.+....|
T Consensus 67 ~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLL 146 (188)
T PF05335_consen 67 QIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLL 146 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666665555556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 88 SMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 88 ~~~ekEl~slqkelesLkseLe~~eee 114 (545)
....+.+..+...|...+..++.++..
T Consensus 147 eaAk~Rve~L~~QL~~Ar~D~~~tk~a 173 (188)
T PF05335_consen 147 EAAKRRVEELQRQLQAARADYEKTKKA 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665555443
No 232
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=74.00 E-value=2.3e+02 Score=34.97 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 042557 188 YEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAK 228 (545)
Q Consensus 188 ~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~ 228 (545)
+......+...+.+...+++-.++.+..++..+..++++..
T Consensus 519 ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~ 559 (1041)
T KOG0243|consen 519 IISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKD 559 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444555556666666777777777777777777776643
No 233
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.94 E-value=31 Score=35.16 Aligned_cols=40 Identities=33% Similarity=0.410 Sum_probs=16.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 75 RQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 75 ~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
.++.++.+.+..|+..+++-..+..++..|.++++.+++.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~er 171 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQER 171 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 234
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=73.76 E-value=1.9e+02 Score=34.08 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 042557 258 SLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKES 318 (545)
Q Consensus 258 ~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~ 318 (545)
.+|.+|.+|..+++.++-..-.+=.+.....-..+.+..+.......+.-+.+.+..+...
T Consensus 465 d~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~ 525 (698)
T KOG0978|consen 465 DMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELK 525 (698)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666667777777777666666665555555555555555555555544444444443333
No 235
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.58 E-value=13 Score=28.37 Aligned_cols=41 Identities=27% Similarity=0.269 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 68 LLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFEL 108 (545)
Q Consensus 68 ~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseL 108 (545)
+++.....|+..++.++..+..+.++...++.+|..|+..+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777777777777777777777777777776554
No 236
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.27 E-value=81 Score=32.96 Aligned_cols=48 Identities=25% Similarity=0.294 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHH
Q 042557 281 KEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQS 328 (545)
Q Consensus 281 ~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~ 328 (545)
..|.+.+...|++++.++.+++.++.+.++-..+|......+...+-+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~ 253 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKS 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444333333333
No 237
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=72.03 E-value=2.2e+02 Score=33.86 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 101 VESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSK 154 (545)
Q Consensus 101 lesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkek 154 (545)
+..+.+++..--.++.++....-.....+..+...+.++..||..+++.++...
T Consensus 137 lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemne 190 (916)
T KOG0249|consen 137 LPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNE 190 (916)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444455555666677777788888888888888876655
No 238
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.76 E-value=2.5e+02 Score=34.57 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HH
Q 042557 5 YARNLVEEWKIRVEELEMQAEEAHKLKRSAS--ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTI-------GR 75 (545)
Q Consensus 5 RV~DLl~Evkkql~sLE~QAeKA~ky~elk~--lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev-------~~ 75 (545)
-+.|+..||.+ |.+.+-.|+...-.=- ........++.....+++++..++..+..++..+..-+ ..
T Consensus 405 llKd~~~EIer----LK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~ 480 (1041)
T KOG0243|consen 405 LLKDLYEEIER----LKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKEL 480 (1041)
T ss_pred HHHHHHHHHHH----HHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35677777776 6666655553221100 11111222344444455555555555555555544433 46
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 76 QKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELE 144 (545)
Q Consensus 76 le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE 144 (545)
+..+.+.++..|...-.++..++.++..+...|.....-+......+..+......+...+......+.
T Consensus 481 l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s 549 (1041)
T KOG0243|consen 481 LKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLS 549 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777775554444444444444444443333333333333333
No 239
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=71.32 E-value=1.5e+02 Score=31.69 Aligned_cols=56 Identities=30% Similarity=0.322 Sum_probs=41.5
Q ss_pred HHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 042557 237 EWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKE 293 (545)
Q Consensus 237 ~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ 293 (545)
+|-.-+-. |=-||.+=+|-.-+|.||++|++-|..+||-+.+-.+=+++|+-.||-
T Consensus 99 EWKD~nDk-vMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~ 154 (351)
T PF07058_consen 99 EWKDENDK-VMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKV 154 (351)
T ss_pred cccccCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77774333 447899999999999999999999999999876655444444444443
No 240
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.62 E-value=1.5e+02 Score=31.40 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 042557 280 TKEEEAQLRDSLKEVEA 296 (545)
Q Consensus 280 ~~~E~~~lr~~Lk~ae~ 296 (545)
-..|...|+..+...+.
T Consensus 274 t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEK 290 (325)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44566666666555443
No 241
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=70.01 E-value=86 Score=28.43 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042557 136 KHKLINELENSREEEEK 152 (545)
Q Consensus 136 l~kl~~ELE~~~~eeEk 152 (545)
+..+...+..++..++.
T Consensus 60 ~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 60 IAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 242
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=69.95 E-value=1.3e+02 Score=31.35 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 042557 126 ASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIE 193 (545)
Q Consensus 126 sseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie 193 (545)
.+.-.+|..++.+...||++...++...+..-=-.+..++.++.++...-..|...=--++-++++++
T Consensus 189 ~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle 256 (267)
T PF10234_consen 189 ASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLE 256 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444455555555544444433322223333444444444444444444444444444433
No 243
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.68 E-value=1.9e+02 Score=32.26 Aligned_cols=95 Identities=18% Similarity=0.136 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 97 MAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKE 176 (545)
Q Consensus 97 lqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeake 176 (545)
..-+++.+...+..+..+...+-.--..+.+.+..+-++.++....|+.++.++.-..+....+..+|.-+..+.....+
T Consensus 295 asle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqE 374 (502)
T KOG0982|consen 295 ASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQE 374 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33344555555666665544444444556666777777888888888888888887777778888888887777666666
Q ss_pred HHHhhHHHHHHHHHH
Q 042557 177 KLLSSQTEHETYEAQ 191 (545)
Q Consensus 177 kl~~~Q~Ele~~r~E 191 (545)
-......++++++-.
T Consensus 375 Lieelrkelehlr~~ 389 (502)
T KOG0982|consen 375 LIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555443
No 244
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.48 E-value=1.9e+02 Score=32.14 Aligned_cols=91 Identities=24% Similarity=0.164 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHH
Q 042557 252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQ 331 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~ 331 (545)
.-.++.-++++..-+..-+...|..++-|+.||..|++-+=+++.. +--.......++|.+..-...-+|-.-|..--
T Consensus 32 ~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~--~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~ 109 (459)
T KOG0288|consen 32 LSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEAT--EKTLTVDVLIAENLRIRSLNEIRELREQKAEF 109 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445556666666777777777777777888888777776543322 22334444455555544444444444444444
Q ss_pred HHHHHHhhHHHHH
Q 042557 332 ENEELRAREADSV 344 (545)
Q Consensus 332 Ene~Lr~~Ea~a~ 344 (545)
+|-++=..+.+.+
T Consensus 110 ~n~~~~l~~~~~~ 122 (459)
T KOG0288|consen 110 ENAELALREMRRK 122 (459)
T ss_pred ccchhhHHHHHHH
Confidence 4444333333333
No 245
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=69.34 E-value=84 Score=31.84 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=13.6
Q ss_pred HHHHHHHhhhhhhHHHHHH------HHHHHHHHHHH
Q 042557 39 DAVMRQLEGNNDKLHDAES------EIAALKEKVGL 68 (545)
Q Consensus 39 ~l~t~eLE~lk~~Leeaes------EI~~LqeKve~ 68 (545)
...-..+-.+-..+..+.. +...++.+...
T Consensus 110 ~lvI~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~ 145 (216)
T KOG1962|consen 110 SLVIRRLHTLLRELATLRANEKAMKENEALKKQLEN 145 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhc
Confidence 3333444444444444444 55555555444
No 246
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=69.05 E-value=1.9e+02 Score=31.93 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042557 12 EWKIRVEELEMQAEEAHK 29 (545)
Q Consensus 12 Evkkql~sLE~QAeKA~k 29 (545)
..+.++..|..+..+...
T Consensus 101 ~~~~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 101 LLEQQLDNLKDQKKSLDT 118 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455544444433
No 247
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=69.00 E-value=1.3e+02 Score=30.28 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=7.5
Q ss_pred HHHHhHHHHHHHHHH
Q 042557 342 DSVKKVEELSSLLEE 356 (545)
Q Consensus 342 ~a~~~i~EL~~ll~e 356 (545)
+|..-+.-|-.|++-
T Consensus 199 aALgyvahlv~lls~ 213 (302)
T PF10186_consen 199 AALGYVAHLVSLLSR 213 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555553
No 248
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=68.84 E-value=11 Score=40.30 Aligned_cols=103 Identities=22% Similarity=0.269 Sum_probs=5.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 042557 44 QLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEK 123 (545)
Q Consensus 44 eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk 123 (545)
.|..+...|..++.-++.|+..+..+...+..+..+|+.....+....-++..+...|..+...|..+...+..+-..-.
T Consensus 29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls 108 (326)
T PF04582_consen 29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLS 108 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhh
Confidence 44555556666666666666666666666666666666666666655555555555555555555554444333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042557 124 LAASSVQNLLEEKHKLINELENS 146 (545)
Q Consensus 124 ~lsseIe~L~eel~kl~~ELE~~ 146 (545)
...+.|.+|....+.+..++..+
T Consensus 109 ~h~ssIS~Lqs~v~~lsTdvsNL 131 (326)
T PF04582_consen 109 DHSSSISDLQSSVSALSTDVSNL 131 (326)
T ss_dssp ---------HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhhhhhhhhhhhh
Confidence 33333444333333333333333
No 249
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=68.71 E-value=1.3e+02 Score=30.15 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 129 VQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVE--AREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK 205 (545)
Q Consensus 129 Ie~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E--~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k 205 (545)
+......+..+....+.+...+...+..+.++...|...... ..-...+....++++..+..++.-++..|.....+
T Consensus 101 l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~r 179 (240)
T PF12795_consen 101 LQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNR 179 (240)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHH
Confidence 333333344444444444444444444444444444432000 11234445555667777888888888888666555
No 250
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=68.34 E-value=2.2e+02 Score=32.47 Aligned_cols=172 Identities=17% Similarity=0.150 Sum_probs=81.1
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 042557 36 ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE- 114 (545)
Q Consensus 36 lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee- 114 (545)
..+.-++.-++.-+-+|+-+=.--+.|-++...|...+.-++..++..-.++.+..-+++.....+.-+-+-+....-.
T Consensus 62 ~d~d~lt~lle~k~~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~ 141 (596)
T KOG4360|consen 62 NDIDFLTELLEEKRRDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAAS 141 (596)
T ss_pred cchHHHHHHHhcccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccc
Confidence 4566667777777777765554445555555555554444444444444444444444443333322222222221110
Q ss_pred -----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 115 -----KAQALNNEKLAASSVQNLLEEKHKLINELENSREE-----------EEKSKKAMESLASALHEVSVEAREAKEKL 178 (545)
Q Consensus 115 -----l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~e-----------eEkekka~EeLa~AL~E~e~E~eeakekl 178 (545)
..+-..+-.-.....+.|..++..+..+...++.. .++...-+-++...|.+....+....+.+
T Consensus 142 v~~~P~~~~~s~S~~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel 221 (596)
T KOG4360|consen 142 VCSTPLVSNESRSAFQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEEL 221 (596)
T ss_pred cccCCCccCcchhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000111222233333333333333222 23333344455566666666666666666
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 179 LSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 179 ~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
..+-.++.....+...|-.-|.++..|.+
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIK 250 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 66666666666666667777766666644
No 251
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=67.85 E-value=1.4e+02 Score=30.15 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 135 EKHKLINELENSREEEEKSKKAMESLASALHE 166 (545)
Q Consensus 135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E 166 (545)
++..+...++.+..-.....-.|..+...|+.
T Consensus 85 el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 85 ELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444433
No 252
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=67.74 E-value=1.1e+02 Score=28.58 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=15.0
Q ss_pred HhhHHHHHHHHhhhhhhHHHHHHH
Q 042557 35 SESLDAVMRQLEGNNDKLHDAESE 58 (545)
Q Consensus 35 ~lSL~l~t~eLE~lk~~LeeaesE 58 (545)
.......+++|+.+...|..++..
T Consensus 42 ~~A~~~v~kql~~vs~~l~~tKkh 65 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSSTKKH 65 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777666655544
No 253
>PRK04406 hypothetical protein; Provisional
Probab=66.96 E-value=43 Score=28.28 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 58 EIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELET 110 (545)
Q Consensus 58 EI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~ 110 (545)
.+..+..++..|+..++=++.-++++...+..-++++..++..+..|...+..
T Consensus 5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456666666666666666666666666666666666666655555554443
No 254
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=66.56 E-value=2.1e+02 Score=31.56 Aligned_cols=7 Identities=14% Similarity=0.216 Sum_probs=3.3
Q ss_pred hccCCCC
Q 042557 468 KELSPDR 474 (545)
Q Consensus 468 ~~~~~~~ 474 (545)
..+||..
T Consensus 397 ~~Is~~~ 403 (457)
T TIGR01000 397 TSISSAP 403 (457)
T ss_pred EEEcCCC
Confidence 3455544
No 255
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=66.28 E-value=91 Score=29.34 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHH
Q 042557 266 LVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREAD 342 (545)
Q Consensus 266 l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~ 342 (545)
+...+..+...+...+..+..+...|..+...+..-+..-.-++.........+.-.|..+..+..||+.||..=+.
T Consensus 24 l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t 100 (135)
T TIGR03495 24 ARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADT 100 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcC
Confidence 44444444445556666677777777666555544444444456666677777888888999999999999877443
No 256
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.52 E-value=2.1e+02 Score=31.51 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 042557 135 EKHKLINELENSREEEEKSKKAMESL----ASALHEVSVEAREAKEKLLSSQTEHETY----EAQIEDLRIVLKATNEKY 206 (545)
Q Consensus 135 el~kl~~ELE~~~~eeEkekka~EeL----a~AL~E~e~E~eeakekl~~~Q~Ele~~----r~Eie~Lq~~L~~aE~k~ 206 (545)
.+..+..+|..++.........++.| ...+.-+...+.+.+-++.++..-+..+ +.|+..|+..|..+|+|.
T Consensus 213 ~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 213 GLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKM 292 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444444444443334334333 3456667777788888887777766655 788999999999999886
Q ss_pred H
Q 042557 207 E 207 (545)
Q Consensus 207 ~ 207 (545)
.
T Consensus 293 ~ 293 (395)
T PF10267_consen 293 A 293 (395)
T ss_pred H
Confidence 5
No 257
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=64.87 E-value=2.7e+02 Score=32.26 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=8.3
Q ss_pred HHHhhHhhHHHHHHHHHHH
Q 042557 245 LVDCVKKSEEENSSLEKEI 263 (545)
Q Consensus 245 ~~~~iK~~eee~~~~~~e~ 263 (545)
+++.+...+.++..+...+
T Consensus 396 ~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 258
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=64.72 E-value=1e+02 Score=29.43 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 184 EHETYEAQIEDLRIVLKATNEKYES 208 (545)
Q Consensus 184 Ele~~r~Eie~Lq~~L~~aE~k~~~ 208 (545)
..+.++.+|+.|+...+.+...|+.
T Consensus 52 d~eeLk~~i~~lq~~~~~~~~~~e~ 76 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNKTAKEEYEA 76 (155)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777776666666663
No 259
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.65 E-value=51 Score=31.33 Aligned_cols=68 Identities=28% Similarity=0.296 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHH
Q 042557 252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQ 331 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~ 331 (545)
+.+++..+..++..|.+.+......+..+..|...|+..+ +..++...+..|...+..++.-|..+..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~------------t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP------------TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777755555555555555554333 3344444444444444444444444444
No 260
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=64.43 E-value=2.6e+02 Score=31.85 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=4.0
Q ss_pred hHHHHHHHHH
Q 042557 346 KVEELSSLLE 355 (545)
Q Consensus 346 ~i~EL~~ll~ 355 (545)
-...+...|.
T Consensus 380 l~~~v~~~l~ 389 (563)
T TIGR00634 380 LAKRVEQELK 389 (563)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 261
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=64.19 E-value=1.9e+02 Score=30.34 Aligned_cols=11 Identities=0% Similarity=-0.019 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 042557 253 EEENSSLEKEI 263 (545)
Q Consensus 253 eee~~~~~~e~ 263 (545)
+.++..++..+
T Consensus 151 ~~~~~~a~~~~ 161 (346)
T PRK10476 151 AQQVDQARTAQ 161 (346)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 262
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=64.17 E-value=2e+02 Score=30.57 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHH-H
Q 042557 186 ETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEI-N 264 (545)
Q Consensus 186 e~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~-~ 264 (545)
+..-.++.+.-++| ++|++||.+ |++.-.+.+.+ -|......-..||..|+.-+-+..+|...+-..- .
T Consensus 156 EKSvKDLqRctvSL----~RYr~~lke---e~d~S~k~ik~---~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqk 225 (302)
T PF07139_consen 156 EKSVKDLQRCTVSL----TRYRVVLKE---EMDSSIKKIKQ---TFAELQSCLMDREVALLAEMDKVKAEAMEILDARQK 225 (302)
T ss_pred HHHHHHHHHHHHHH----HhhhhHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666 899998865 44444444433 3444444566788888766666666554443332 3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 042557 265 RLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQ 302 (545)
Q Consensus 265 ~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~ 302 (545)
+..++-+.+.+-.+..-..+.+||.-+|+-.++..+=.
T Consensus 226 kAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~rk~de 263 (302)
T PF07139_consen 226 KAEELKRLTDRASQMSEEQLAELRADIKHFVSERKYDE 263 (302)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhHH
Confidence 44445555666666667778888888888777766543
No 263
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.10 E-value=84 Score=26.13 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 125 AASSVQNLLEEKHKLINELENSREE 149 (545)
Q Consensus 125 lsseIe~L~eel~kl~~ELE~~~~e 149 (545)
....++....+...+..+++.++.+
T Consensus 38 ~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 38 AERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555444
No 264
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.95 E-value=1.6e+02 Score=29.18 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 156 AMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 156 a~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
.+.+|...|-++......+......+..++..++..+..++..+.+++-+++
T Consensus 132 ~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 132 EIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444545555556666667777777777777766665
No 265
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=63.95 E-value=1.7e+02 Score=29.67 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 67 GLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 67 e~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
..|+-.|...+..+.+++..+-.+-..-..+...++.+....+.++..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555555
No 266
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=63.92 E-value=1.9e+02 Score=32.90 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 77 KADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENS 146 (545)
Q Consensus 77 e~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~ 146 (545)
..++.++...+..+.-....+..+...|...+...+.+ .+.+..++..+...++++..||...
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~e-------k~~l~eeL~~a~~~i~~LqDEL~TT 481 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKE-------KESLEEELKEANQNISRLQDELETT 481 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333222 2233344444444444455554444
No 267
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=62.97 E-value=1.1e+02 Score=27.22 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 123 KLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHE 166 (545)
Q Consensus 123 k~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E 166 (545)
..+...+.....=+.........+....+...+........|..
T Consensus 42 ~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~ 85 (126)
T PF13863_consen 42 QELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKK 85 (126)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 268
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=62.95 E-value=1.9e+02 Score=29.75 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhHH------hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 042557 4 SYARNLVEEWKIRVEELEM----QAEEAHKLKRSAS------ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGL 68 (545)
Q Consensus 4 ~RV~DLl~Evkkql~sLE~----QAeKA~ky~elk~------lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~ 68 (545)
+.-+.++.||-.++..|-. .+.+|+=|+..+. .....+...|+..+..+.-+...+..+...+..
T Consensus 35 ~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~ 109 (239)
T PF05276_consen 35 ATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMS 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456788888888877655 4578888888877 555666777777777777777777766665544
No 269
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.24 E-value=96 Score=26.18 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 58 EIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFE 107 (545)
Q Consensus 58 EI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkse 107 (545)
+|..|+++..+|..++.......+.+..+-.++..+-+.-|..+.+|-++
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333333333333333333344444444444444444433
No 270
>PRK02119 hypothetical protein; Provisional
Probab=61.84 E-value=51 Score=27.61 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 58 EIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELET 110 (545)
Q Consensus 58 EI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~ 110 (545)
++..+..++..|+..++=++.-++++...+..-++.+..++..+..|...+..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666666666666666666666665566555555555544
No 271
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.64 E-value=69 Score=26.51 Aligned_cols=47 Identities=23% Similarity=0.111 Sum_probs=34.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhH
Q 042557 277 ACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKE 323 (545)
Q Consensus 277 ~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE 323 (545)
++.++.||..||.-+....++-.-..+..+.|++-+-.+-+.|.-+|
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 33777888888888888888888888888888777766666665444
No 272
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=61.39 E-value=1.9e+02 Score=30.38 Aligned_cols=29 Identities=28% Similarity=0.222 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 126 ASSVQNLLEEKHKLINELENSREEEEKSK 154 (545)
Q Consensus 126 sseIe~L~eel~kl~~ELE~~~~eeEkek 154 (545)
.+...+|..++.+...||+..+.+++...
T Consensus 132 asdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 132 ASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555554444433
No 273
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=61.37 E-value=2.1e+02 Score=29.89 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 042557 160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKE 226 (545)
Q Consensus 160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~ 226 (545)
|...|.-..+-.++++.-...+-.-++++-.+++.++..+--- +.-|.+.+.+|.++++-+++
T Consensus 241 Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliL----Qq~Lketr~~Iq~l~k~~~q 303 (330)
T KOG2991|consen 241 LEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILIL----QQKLKETRKEIQRLKKGLEQ 303 (330)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444555544443222 22234455556666655555
No 274
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=61.34 E-value=1.1e+02 Score=26.41 Aligned_cols=51 Identities=22% Similarity=0.200 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 61 ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETV 111 (545)
Q Consensus 61 ~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~ 111 (545)
.|..||...-.+|.-++-++++++..-....++.......-..|..+...+
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qL 58 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455554445555555555555555544444444333333344333333
No 275
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=61.13 E-value=3.3e+02 Score=31.97 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=26.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 042557 41 VMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAK 91 (545)
Q Consensus 41 ~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~e 91 (545)
++..|..+..+.+-+..++..|.+++...---|..|+.-|.+.+..|...+
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatE 159 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATE 159 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHH
Confidence 444555555555555555666666555544445555555555555554443
No 276
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=60.65 E-value=88 Score=33.59 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 042557 17 VEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSE 96 (545)
Q Consensus 17 l~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~s 96 (545)
+-.|+-..++|=-++.--.-...-++++++.+++.|++...+++.--.+.+.+.+++.+++.-++-+...+.++.+.++.
T Consensus 121 v~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 121 VSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred hHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333333333322223344455666666666666666666665555555555555555555444444444444433
Q ss_pred H
Q 042557 97 M 97 (545)
Q Consensus 97 l 97 (545)
.
T Consensus 201 R 201 (405)
T KOG2010|consen 201 R 201 (405)
T ss_pred H
Confidence 3
No 277
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=60.57 E-value=1.4e+02 Score=27.43 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=9.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q 042557 176 EKLLSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 176 ekl~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
..+..++..++.+...+..+...+
T Consensus 13 ~~~~~l~~~~~~l~~~~~~l~~~~ 36 (140)
T PRK03947 13 AQLQALQAQIEALQQQLEELQASI 36 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 278
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=60.55 E-value=2.5e+02 Score=30.43 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=9.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHH
Q 042557 43 RQLEGNNDKLHDAESEIAALKE 64 (545)
Q Consensus 43 ~eLE~lk~~LeeaesEI~~Lqe 64 (545)
.++..++..|..++..+...+.
T Consensus 178 ~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 178 QQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 279
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.30 E-value=2.3e+02 Score=29.93 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=44.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 46 EGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA 116 (545)
Q Consensus 46 E~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~ 116 (545)
.-++..|.+..+.+..=.-.|..|..++.+...+|-+-.=+--.++=.+...+++|..|+.-|++++..+.
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444444444444444444445555667777777776555555666667778888888888888877743
No 280
>PRK00106 hypothetical protein; Provisional
Probab=60.28 E-value=3.1e+02 Score=31.44 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 042557 3 ESYARNLVEEWKIRVEELEMQAEE 26 (545)
Q Consensus 3 e~RV~DLl~Evkkql~sLE~QAeK 26 (545)
+..+++|+.+-++..+.+..++..
T Consensus 41 ~~~A~~IleeAe~eAe~I~keA~~ 64 (535)
T PRK00106 41 EQEAVNLRGKAERDAEHIKKTAKR 64 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666555544443
No 281
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=59.88 E-value=1.5e+02 Score=35.34 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=9.9
Q ss_pred CCCccccccCCCCCCCChh
Q 042557 499 NGLSSSENIDDGGSSPSKQ 517 (545)
Q Consensus 499 ~~~~~~~~~~~~~~~~~k~ 517 (545)
+|+....=+||-|+---+.
T Consensus 720 ~g~~~v~IIHGkGtG~Lr~ 738 (771)
T TIGR01069 720 AGYEVVLIIHGKGSGKLRK 738 (771)
T ss_pred CCCCEEEEEcCCChhHHHH
Confidence 4555444466666544443
No 282
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.32 E-value=49 Score=31.46 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 042557 52 LHDAESEIAALKEKVGLLEMTIGRQKADLDESE 84 (545)
Q Consensus 52 LeeaesEI~~LqeKve~LE~ev~~le~~leE~k 84 (545)
+..+..+|..|+.++..+..++..+...+..+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444433
No 283
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=59.00 E-value=2.4e+02 Score=30.08 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 120 NNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKE 176 (545)
Q Consensus 120 ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeake 176 (545)
.|++.+..++..|-.+..++...|-.++..--....-|..-+..|.++..+.+..++
T Consensus 266 SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~Kq 322 (384)
T KOG0972|consen 266 SREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQ 322 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777766666666666555555555555566665555444444
No 284
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=58.06 E-value=1.9e+02 Score=28.29 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042557 186 ETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 186 e~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
..+..++..+......++.+|.
T Consensus 166 ~~~~~ei~~~~~~~~~~~~~~~ 187 (236)
T PF09325_consen 166 EQAENEIEEAERRVEQAKDEFE 187 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 285
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=56.43 E-value=5.4 Score=35.87 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 042557 199 LKATNEKYESMLDDAKHEIGLLTNIIKEAK 228 (545)
Q Consensus 199 L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~ 228 (545)
+..|......++.+|..++.++...++.++
T Consensus 91 ~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk 120 (131)
T PF05103_consen 91 IEEAQKEAEEIIEEARAEAERLREEIEELK 120 (131)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 286
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.91 E-value=3.4e+02 Score=30.55 Aligned_cols=165 Identities=17% Similarity=0.175 Sum_probs=83.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 40 AVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQAL 119 (545)
Q Consensus 40 l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ 119 (545)
.+.+--+.+...|..-.+-++.|..++..+...+..+...|++.+.-+.+....+..... ..+-+-.. .
T Consensus 276 ~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~----------~~e~e~~e-~ 344 (521)
T KOG1937|consen 276 KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELK----------NLETEDEE-I 344 (521)
T ss_pred HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------cccchHHH-H
Confidence 344444455555666666777777777777777777777777777666655433332221 11111000 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 042557 120 NNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKA--MESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRI 197 (545)
Q Consensus 120 ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka--~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~ 197 (545)
++-..+...+..+.+++++-...-..++.++++.-.+ +-....-++++-.-.+-.+.-...+..+.-+++.+...+..
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233333333333333222222333333222211 12244556666667777777777777777777777777666
Q ss_pred HHHHH-HHHHHHhHHhHHH
Q 042557 198 VLKAT-NEKYESMLDDAKH 215 (545)
Q Consensus 198 ~L~~a-E~k~~~~l~ea~~ 215 (545)
.|..+ -.=|+.+.-.|.+
T Consensus 425 ~L~Rsfavtdellf~sakh 443 (521)
T KOG1937|consen 425 ALNRSFAVTDELLFMSAKH 443 (521)
T ss_pred HHhhhHHHHHHHHHHHhcc
Confidence 66433 1223444444444
No 287
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.40 E-value=4.4e+02 Score=31.60 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=8.6
Q ss_pred CCCccccccCCCCCCCCh
Q 042557 499 NGLSSSENIDDGGSSPSK 516 (545)
Q Consensus 499 ~~~~~~~~~~~~~~~~~k 516 (545)
+|+....=+||-|+..-+
T Consensus 731 ~g~~~v~IIHGkGtG~Lr 748 (782)
T PRK00409 731 AGYGEVLIIHGKGTGKLR 748 (782)
T ss_pred cCCCEEEEEcCCChhHHH
Confidence 354434446666654333
No 288
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=55.27 E-value=95 Score=35.75 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=38.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 45 LEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKE 113 (545)
Q Consensus 45 LE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~ee 113 (545)
+.+..--+.....+...|+-+.+.|..+|+.+...++++++.+.+.+.++..+.-.|+.-...++.+.+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 444444455555566666666666666666666666666666665555555555555544444444443
No 289
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=54.83 E-value=56 Score=37.49 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=41.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 042557 41 VMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMA 98 (545)
Q Consensus 41 ~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slq 98 (545)
+.-+|-.+..+-++++++|..+..+++.+.+.+-+.+.++..++..+++++..+..+.
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3345556666777888888888888888888887777777777777777766554443
No 290
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=54.24 E-value=1.4e+02 Score=25.55 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 042557 5 YARNLVEEWKIRVEELEM 22 (545)
Q Consensus 5 RV~DLl~Evkkql~sLE~ 22 (545)
|+.+||.=|+.-...|-.
T Consensus 1 Rl~elLd~ir~Ef~~~~~ 18 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQ 18 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 566666666664444333
No 291
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.22 E-value=4.3e+02 Score=31.17 Aligned_cols=94 Identities=20% Similarity=0.210 Sum_probs=53.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 042557 46 EGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLA 125 (545)
Q Consensus 46 E~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~l 125 (545)
+.++..++.+...-+.|...+..++++++.+-..+.+.........+....+...+..|.-.++.+.....+-...-+.+
T Consensus 50 ~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el 129 (660)
T KOG4302|consen 50 EIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKEL 129 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666665555555444333333333344566666666666666666555444444666
Q ss_pred HHHHHHHHHHHHHH
Q 042557 126 ASSVQNLLEEKHKL 139 (545)
Q Consensus 126 sseIe~L~eel~kl 139 (545)
..+|+.+.+.++..
T Consensus 130 ~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 130 YHQIEKLCEELGGP 143 (660)
T ss_pred HHHHHHHHHHhcCC
Confidence 66777777766665
No 292
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=54.06 E-value=3.7e+02 Score=30.39 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=63.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 042557 72 TIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE-KAQALNNEKLAAS--SVQNLLEEKHKLINELENSRE 148 (545)
Q Consensus 72 ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee-l~el~ekEk~lss--eIe~L~eel~kl~~ELE~~~~ 148 (545)
.+..+..-+...+.+|.....+-..+|-+|..++..+-.+++. +...+.+.+..+. ++.....++..=...|..++-
T Consensus 391 ~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkg 470 (527)
T PF15066_consen 391 TLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKG 470 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444444455555555555566666666666666666666655 3334444433332 222222233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 042557 149 EEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQI 192 (545)
Q Consensus 149 eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Ei 192 (545)
+++++ ..+||.=+..+.+-...+++.+|.+++....+-
T Consensus 471 elEka------t~SALdlLkrEKe~~EqefLslqeEfQk~eken 508 (527)
T PF15066_consen 471 ELEKA------TTSALDLLKREKETREQEFLSLQEEFQKHEKEN 508 (527)
T ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33322 358888888888888899999999987655443
No 293
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=52.36 E-value=94 Score=29.65 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=6.7
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 042557 47 GNNDKLHDAESEIAALKE 64 (545)
Q Consensus 47 ~lk~~LeeaesEI~~Lqe 64 (545)
.++.+|..++.+|..|+.
T Consensus 31 ~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 31 NLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333333333333
No 294
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=52.31 E-value=2.6e+02 Score=28.10 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=43.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHH
Q 042557 250 KKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSV 329 (545)
Q Consensus 250 K~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i 329 (545)
+.|+..+...+..+.+|+..++.+|...+-+-.=...-.--||+..+.- -+..|+.-+...+.++..+
T Consensus 115 ~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~PVL~~~~D~vL~LKHNLNA~------------AI~sL~~e~~~~~~di~~L 182 (201)
T PF11172_consen 115 RASEQKLAETRRRYAQLIKAMRRAESKMQPVLAAFRDQVLYLKHNLNAQ------------AIASLQGEFSSIESDISQL 182 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhccccHH------------HHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999998886555332222222234433321 1234444455555555555
Q ss_pred HHHHH
Q 042557 330 IQENE 334 (545)
Q Consensus 330 ~~Ene 334 (545)
..+.+
T Consensus 183 i~~m~ 187 (201)
T PF11172_consen 183 IKEME 187 (201)
T ss_pred HHHHH
Confidence 55543
No 295
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=52.20 E-value=85 Score=32.32 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=38.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 042557 75 RQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNL 132 (545)
Q Consensus 75 ~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L 132 (545)
.++..+....+.+..++..+..++.+|.+|++.++...-++.+++++-+.+..+|..+
T Consensus 44 ~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 44 QLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555667777778888888888888877777776666666666665553
No 296
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=51.75 E-value=2.4e+02 Score=27.45 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557 52 LHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETS 95 (545)
Q Consensus 52 LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~ 95 (545)
...+..+...|+..+..|...+..|+.++..+...+..++.++.
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443333
No 297
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.75 E-value=4.7e+02 Score=30.85 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 042557 189 EAQIEDLRIVLKATNEKYESML 210 (545)
Q Consensus 189 r~Eie~Lq~~L~~aE~k~~~~l 210 (545)
..++.+|....+.++.-|..+|
T Consensus 369 e~~~~~L~R~~~~~~~lY~~lL 390 (726)
T PRK09841 369 QQEVLRLSRDVEAGRAVYLQLL 390 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554433
No 298
>PRK10869 recombination and repair protein; Provisional
Probab=51.58 E-value=4.2e+02 Score=30.29 Aligned_cols=15 Identities=13% Similarity=-0.097 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhHh
Q 042557 217 IGLLTNIIKEAKDES 231 (545)
Q Consensus 217 ~~~lkk~~E~~~~E~ 231 (545)
+..|++++-....++
T Consensus 308 l~~L~rKyg~~~~~~ 322 (553)
T PRK10869 308 QISLARKHHVSPEEL 322 (553)
T ss_pred HHHHHHHhCCCHHHH
Confidence 445555554433333
No 299
>PRK04325 hypothetical protein; Provisional
Probab=51.36 E-value=1e+02 Score=25.87 Aligned_cols=49 Identities=10% Similarity=0.176 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 62 LKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELET 110 (545)
Q Consensus 62 LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~ 110 (545)
+..++..|+..++=++.-++++...+..-++.+..++..+.-|..++..
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555444433
No 300
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=50.68 E-value=79 Score=26.00 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 64 EKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELET 110 (545)
Q Consensus 64 eKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~ 110 (545)
.++..|+..++=+..-++++...+..-++.+..++..+..|...+..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
No 301
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=50.38 E-value=31 Score=36.86 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042557 124 LAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATN 203 (545)
Q Consensus 124 ~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE 203 (545)
.+...|.+.+..++.+...+..++..+......+.+|...+..+...+-.+...+..+...+.+++..+-.+...+.+-+
T Consensus 67 ~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe 146 (326)
T PF04582_consen 67 DLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE 146 (326)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence 34444555555555555555555555555566666677777777777777777777777777777777777777776666
Q ss_pred HHHH
Q 042557 204 EKYE 207 (545)
Q Consensus 204 ~k~~ 207 (545)
.|..
T Consensus 147 ~RV~ 150 (326)
T PF04582_consen 147 SRVK 150 (326)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 302
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.07 E-value=1.4e+02 Score=24.37 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 042557 182 QTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKE 226 (545)
Q Consensus 182 Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~ 226 (545)
+.+|..++.....+...|++|+.+-+.+ ..+|..|++.++.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL----~~ei~~L~~e~ee 57 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNREL----EQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3455555555555555555555554422 2334444444443
No 303
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.03 E-value=1.9e+02 Score=32.61 Aligned_cols=9 Identities=33% Similarity=0.398 Sum_probs=4.4
Q ss_pred CCChhhHHH
Q 042557 421 GMNDETVEL 429 (545)
Q Consensus 421 ~~~~~~~~~ 429 (545)
-++|.||.+
T Consensus 316 VF~DGtirT 324 (472)
T TIGR03752 316 VFNDGTIRT 324 (472)
T ss_pred EEeCCeEEE
Confidence 344555554
No 304
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=49.79 E-value=3.8e+02 Score=29.28 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHH
Q 042557 303 ETLGQARAESMKLKESFLDKETELQSVIQENEELR 337 (545)
Q Consensus 303 e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr 337 (545)
.+-.-++.++..|+..+.|+|.++|-+.- |+.|+
T Consensus 266 ~r~K~lKeEmeSLkeiVkdlEA~hQh~~p-NeqLk 299 (561)
T KOG1103|consen 266 KRQKMLKEEMESLKEIVKDLEADHQHLRP-NEQLK 299 (561)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCc-ccccc
Confidence 34455677888899999999998886543 44444
No 305
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=49.61 E-value=1.1e+02 Score=27.69 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=34.7
Q ss_pred HHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 042557 29 KLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDES 83 (545)
Q Consensus 29 ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~ 83 (545)
++.++..+++.|+.+--+-+...+..++..+..++.++..+...+..+..++..+
T Consensus 59 klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 59 KLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666888887777777666666666666666666665555555544444333
No 306
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=49.38 E-value=40 Score=30.04 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557 267 VNLLKETEEDACATKEEEAQLRDSL-KEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRA 338 (545)
Q Consensus 267 ~e~l~~~E~~~~~~~~E~~~lr~~L-k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~ 338 (545)
......+|.....+..|++.|-..| .+|=..+..++..-..+...+..|...+.+.+.-|.+++.+...|+.
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777778888888887 66666666666555555677778888888888887777776666553
No 307
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=48.82 E-value=4.5e+02 Score=29.87 Aligned_cols=14 Identities=0% Similarity=-0.130 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 042557 8 NLVEEWKIRVEELE 21 (545)
Q Consensus 8 DLl~Evkkql~sLE 21 (545)
.++.+-+...+.+.
T Consensus 25 ~~l~~Ae~eAe~i~ 38 (514)
T TIGR03319 25 KKLGSAEELAKRII 38 (514)
T ss_pred HHHHHHHHHHHHHH
Confidence 34443334333333
No 308
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=48.50 E-value=4.3e+02 Score=29.48 Aligned_cols=66 Identities=21% Similarity=0.174 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHh-hHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 042557 292 KEVEAEVIYMQETLGQARAESMKLKESFLD-KETELQSVIQENEELRAREADSVKKVEELSSLLEEA 357 (545)
Q Consensus 292 k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~d-kE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea 357 (545)
+.+..++..+...+..+..-...++-.+.+ -|.+|+.|.+|=+-|+.-|.-......+|.++.+-.
T Consensus 249 e~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf 315 (424)
T PF03915_consen 249 ETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETF 315 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666655555555544 389999999999999999998888888888776643
No 309
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.18 E-value=3.1e+02 Score=27.75 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=34.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 45 LEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQA 118 (545)
Q Consensus 45 LE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el 118 (545)
++............-...+.++..+..+-..+..++..+..++...+.....++..+.++..++..++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455555444444444444444444444444444444444444444444444444333
No 310
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=47.90 E-value=4.4e+02 Score=29.41 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 042557 50 DKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSV 129 (545)
Q Consensus 50 ~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseI 129 (545)
..-..+-..+..||+-|+.|.+.|. ...+-=....+..+.+++....++|..+...|...+-... +-+..++
T Consensus 213 ~~sd~Ll~kVdDLQD~VE~LRkDV~--~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~Wk------KiWE~EL 284 (424)
T PF03915_consen 213 EESDRLLTKVDDLQDLVEDLRKDVV--QRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWK------KIWESEL 284 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH------HHHHHHH
Confidence 3334444455555555555555442 2223333344555555555555556555555555444433 5566667
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042557 130 QNLLEEKHKLINELENS 146 (545)
Q Consensus 130 e~L~eel~kl~~ELE~~ 146 (545)
....++-..+...-+.+
T Consensus 285 ~~V~eEQqfL~~QedL~ 301 (424)
T PF03915_consen 285 QKVCEEQQFLKLQEDLL 301 (424)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77666666666554444
No 311
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.74 E-value=4.4e+02 Score=29.99 Aligned_cols=49 Identities=8% Similarity=0.140 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 101 VESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREE 149 (545)
Q Consensus 101 lesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~e 149 (545)
+...+..|+.+.+.+.+|...+......|..+..+...|.+++-++.-.
T Consensus 350 ~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ik 398 (508)
T KOG3091|consen 350 VKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIK 398 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555455566666666666666666665554333
No 312
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=47.62 E-value=3e+02 Score=27.41 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhHhH
Q 042557 213 AKHEIGLLTNIIKEAKDESK 232 (545)
Q Consensus 213 a~~e~~~lkk~~E~~~~E~e 232 (545)
|.....++..+++++.+.++
T Consensus 164 a~~~fer~e~ki~~~ea~ae 183 (219)
T TIGR02977 164 AMARFEQYERRVDELEAQAE 183 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445555544444433
No 313
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=47.32 E-value=4.5e+02 Score=29.41 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 129 VQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 129 Ie~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
+..+.-++..+..+-+.+-++++...+.-.++...|.++.....++.++-..+..+....+-+.-..+-.|..-+..++
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~ 256 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIE 256 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence 4444445555555555666666666667788899999999888888888888888877777777777777766666666
No 314
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=46.82 E-value=2e+02 Score=25.11 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=47.5
Q ss_pred HHHHHHHHhh--hhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 232 KISKAEWEQK--ELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQAR 309 (545)
Q Consensus 232 e~s~~~~~~k--E~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~ 309 (545)
+.....+..| -...|+.|-.+..+...++.+++.|+..... ++.+...+.. ..+.++.+.
T Consensus 12 e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~-------~sk~I~~~~~-----------~~~~~~~l~ 73 (108)
T PF02403_consen 12 EEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNE-------LSKEIGKLKK-----------AGEDAEELK 73 (108)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHCH-----------TTCCTHHHH
T ss_pred HHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHhh-----------CcccHHHHH
Confidence 3344444444 4566777777777777777777766666552 2222222211 113345555
Q ss_pred HHHHhHHHhHHhhHHHHHHHHHHHHH
Q 042557 310 AESMKLKESFLDKETELQSVIQENEE 335 (545)
Q Consensus 310 ~e~~~Lk~~l~dkE~eLq~i~~Ene~ 335 (545)
.+...|+..+...|..+..+..+...
T Consensus 74 ~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 74 AEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666555544
No 315
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=46.75 E-value=4.2e+02 Score=28.84 Aligned_cols=161 Identities=21% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 042557 136 KHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKH 215 (545)
Q Consensus 136 l~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~ 215 (545)
+......|..+--.+-..+ .-.|-+-...++.+++-+..-|.+.++++..-+.|...| .+.+.++-.+..
T Consensus 58 i~~re~qlk~aa~~llq~k------irk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL----~~~~~vf~k~k~ 127 (401)
T PF06785_consen 58 IGRREKQLKTAAGQLLQTK------IRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQL----FHVREVFMKTKG 127 (401)
T ss_pred hhHHHHHHHHHHHHHHHHH------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----
Q 042557 216 EIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL---- 291 (545)
Q Consensus 216 e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L---- 291 (545)
++..+--.+-+ ..++...++.+++.+.-..+.+|.+.+.+.-|.++.+.--
T Consensus 128 ~~q~LE~li~~-------------------------~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~ 182 (401)
T PF06785_consen 128 DIQHLEGLIRH-------------------------LREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN 182 (401)
T ss_pred hHHHHHHHHHH-------------------------HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHH
Q 042557 292 KEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQ 331 (545)
Q Consensus 292 k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~ 331 (545)
-.-.+-..+--.-+.--.+....|...+.|+=-++-++-|
T Consensus 183 ~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 183 DEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 316
>PRK02793 phi X174 lysis protein; Provisional
Probab=46.73 E-value=1.3e+02 Score=25.14 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 62 LKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELET 110 (545)
Q Consensus 62 LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~ 110 (545)
+..++..|+..++=++.-++++...+..-++.+..++..+..|...+..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555555555555555555544443
No 317
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.67 E-value=1.7e+02 Score=24.45 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 042557 284 EAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESF 319 (545)
Q Consensus 284 ~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l 319 (545)
+-.||..++..+..+...+.+++.+..+...|...+
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555555554444
No 318
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=46.28 E-value=4.2e+02 Score=28.76 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 042557 279 ATKEEEAQLRDSLKEVEAEVIYMQ 302 (545)
Q Consensus 279 ~~~~E~~~lr~~Lk~ae~e~~ea~ 302 (545)
..+++.+..+..+.++...+..+.
T Consensus 148 vs~~~~~~a~~a~~~A~A~~~~a~ 171 (352)
T COG1566 148 VSREELDRARAALQAAEAALAAAQ 171 (352)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhH
Confidence 346667777777777777776666
No 319
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.16 E-value=5.5e+02 Score=30.77 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=13.1
Q ss_pred hHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 244 HLVDCVKKSEEENSSLEKEINRLVNLLKETEED 276 (545)
Q Consensus 244 ~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~ 276 (545)
.+-..|..++.+...++....++...+..+++.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~ 549 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKL 549 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333333333333
No 320
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.00 E-value=78 Score=24.22 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557 251 KSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL 291 (545)
Q Consensus 251 ~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L 291 (545)
.+|-+...|+..++.|.........+...++.+...|...|
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777777777777755555555555555555544
No 321
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=45.51 E-value=3.6e+02 Score=27.80 Aligned_cols=9 Identities=22% Similarity=0.258 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 042557 287 LRDSLKEVE 295 (545)
Q Consensus 287 lr~~Lk~ae 295 (545)
++..++.+.
T Consensus 191 ~~~~l~~a~ 199 (334)
T TIGR00998 191 AKERLKTAW 199 (334)
T ss_pred HHHHHHHHH
Confidence 333343333
No 322
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=45.46 E-value=4.8e+02 Score=29.20 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=11.5
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 042557 48 NNDKLHDAESEIAALKEKVG 67 (545)
Q Consensus 48 lk~~LeeaesEI~~LqeKve 67 (545)
....|...+.-|+.|..+..
T Consensus 221 a~aLL~~sE~~VN~Ls~rar 240 (434)
T PRK15178 221 AQRILSFAEQHVNTVSARMQ 240 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665544
No 323
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=45.33 E-value=2.9e+02 Score=26.62 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 042557 292 KEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLE 355 (545)
Q Consensus 292 k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ 355 (545)
...+.++.++.++.+++.-+-..|-..|.+ |..+-+ ..=++++.||+..++
T Consensus 108 qKKEkEykealea~nEknkeK~~Lv~~L~e-------Lv~eSE------~~rmKKLEELsk~ie 158 (159)
T PF04949_consen 108 QKKEKEYKEALEAFNEKNKEKAQLVTRLME-------LVSESE------RLRMKKLEELSKEIE 158 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH------HHHHHHHHHHHhhcc
Confidence 446888888888888888888888777744 344444 444678888887654
No 324
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=45.23 E-value=3.3e+02 Score=27.24 Aligned_cols=117 Identities=22% Similarity=0.240 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHH
Q 042557 191 QIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLL 270 (545)
Q Consensus 191 Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l 270 (545)
.+..++.+|..|.+-++ |...++. ++.--..-...+|......|...++.++.++..++.+++.+--..
T Consensus 98 d~~~w~~al~na~a~le-------hq~~R~~----NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~R 166 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLE-------HQRLRLE----NLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRER 166 (221)
T ss_pred cHHHHHHHHHHHHHHHH-------HHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655 5444433 233333344558999999988888899999988888886654443
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHh
Q 042557 271 KETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLD 321 (545)
Q Consensus 271 ~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~d 321 (545)
+..+. ....++..|...-+.......+...++..+..++.+|+.....
T Consensus 167 K~~Q~---~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 167 KRRQE---EAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32221 1333444444444555555555555555555555555544433
No 325
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=45.08 E-value=17 Score=32.55 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 042557 156 AMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEI 217 (545)
Q Consensus 156 a~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~ 217 (545)
-++.+...|..+..+...++.++..++..+..++.....|+.+|..|......+...|..+.
T Consensus 26 fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA 87 (131)
T PF05103_consen 26 FLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEA 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 34667777777777778888888888888888888888888877766666555544444443
No 326
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.99 E-value=1e+02 Score=29.82 Aligned_cols=65 Identities=25% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-HHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 10 VEEWKIRVEELEMQAEEAHKLKRS-ASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIG 74 (545)
Q Consensus 10 l~Evkkql~sLE~QAeKA~ky~el-k~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~ 74 (545)
+...+.++..+..|++.+....+- ......-...+++.++..|...+.++..|++|.+.+.+++.
T Consensus 127 l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 127 LIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 327
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=44.95 E-value=2.9e+02 Score=26.59 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 042557 171 AREAKEKLLSSQTEHETYEAQIED-LRIVLKATNEKYESMLDDAKHEIGLLTN 222 (545)
Q Consensus 171 ~eeakekl~~~Q~Ele~~r~Eie~-Lq~~L~~aE~k~~~~l~ea~~e~~~lkk 222 (545)
..++...+..++..+..++.++.. +..+-..|+..+...+++|+.++.++..
T Consensus 71 ~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~ 123 (184)
T CHL00019 71 REEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLEN 123 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444443 2333444555555556666665555443
No 328
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.73 E-value=1.9e+02 Score=24.26 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042557 53 HDAESEIAALKEKVGLLEM 71 (545)
Q Consensus 53 eeaesEI~~LqeKve~LE~ 71 (545)
.+-..+|+.|...-+.|..
T Consensus 8 ~EKDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSK 26 (74)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 329
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=44.66 E-value=3.8e+02 Score=27.74 Aligned_cols=8 Identities=38% Similarity=0.327 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 042557 301 MQETLGQA 308 (545)
Q Consensus 301 a~e~~~ea 308 (545)
++..+..+
T Consensus 191 ~~~~l~~a 198 (327)
T TIGR02971 191 ALEAVQQA 198 (327)
T ss_pred HHHHHHHH
Confidence 33333333
No 330
>PRK00846 hypothetical protein; Provisional
Probab=44.48 E-value=1.5e+02 Score=25.36 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 62 LKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETV 111 (545)
Q Consensus 62 LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~ 111 (545)
+..++..|+..++=++.-+++++..+...++.+..++..+.-|..+++.+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555555555555555444
No 331
>PRK00295 hypothetical protein; Provisional
Probab=44.32 E-value=1.6e+02 Score=24.35 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 66 VGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFEL 108 (545)
Q Consensus 66 ve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseL 108 (545)
+..|+..++=++.-++++...+..-++.+..++..+..|...+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333444444443333
No 332
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=43.85 E-value=4.6e+02 Score=28.51 Aligned_cols=297 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 76 QKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE-----KAQALNNEKLAASSVQNLLEEKHKLINELENSREEE 150 (545)
Q Consensus 76 le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee-----l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~ee 150 (545)
|..........-.........+..+...+..+....-.. -..+.++-..+..=...|...+..+..|++.+....
T Consensus 1 W~~~n~~~~~~a~~~r~~s~~lr~es~~l~~et~~~t~~~q~~~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K 80 (384)
T PF03148_consen 1 WHQNNQQLYNNAEAQRNDSERLRQESRRLINETDARTKWDQYDSNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEK 80 (384)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042557 151 EKSKKAMESLASALH--------------------EVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESML 210 (545)
Q Consensus 151 Ekekka~EeLa~AL~--------------------E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l 210 (545)
....++++.+..-|. .++.++-....-+...+.-|...-.++..--..|.+|.-++.
T Consensus 81 ~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le--- 157 (384)
T PF03148_consen 81 RRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLE--- 157 (384)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 042557 211 DDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDS 290 (545)
Q Consensus 211 ~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~ 290 (545)
.-+..+.+.+..+.......-++....|-.-+.+..........=..-....+..|+.++.....=.+.+..+
T Consensus 158 -------~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~ 230 (384)
T PF03148_consen 158 -------KDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSI 230 (384)
T ss_pred -------HHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHhh---cccccc
Q 042557 291 LKEVEAEVIYMQETLGQA-RAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEAMAK---KQTAEN 366 (545)
Q Consensus 291 Lk~ae~e~~ea~e~~~ea-~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea~~~---~~~~~~ 366 (545)
|.++-+.+.....+++.| +.-+...+..+.++|..|..+.+|...+-..=..=.++|.+-..-+--|-++ ...-|+
T Consensus 231 l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~ 310 (384)
T PF03148_consen 231 LEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPN 310 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCc
Q ss_pred Cccccccccccccchh
Q 042557 367 GELTDSEKDYDLLPKV 382 (545)
Q Consensus 367 ~~~~~~~~~~~~~~~~ 382 (545)
.++.+-.++|.+.+.|
T Consensus 311 vElcrD~~q~~L~~Ev 326 (384)
T PF03148_consen 311 VELCRDPPQYGLIEEV 326 (384)
T ss_pred hHHHHhhHHHHHHHHH
No 333
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=43.06 E-value=5.4e+02 Score=29.09 Aligned_cols=61 Identities=28% Similarity=0.418 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 042557 6 ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVG 67 (545)
Q Consensus 6 V~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve 67 (545)
+.|...-|--+-.-|+..++.+++..+-+-.++.... -+..+...|+.+...+...++.+.
T Consensus 170 ~~d~~e~~~~kdSQlkvrlqe~~~ll~~Rve~le~~S-al~~lq~~L~la~~~~~~~~e~~i 230 (554)
T KOG4677|consen 170 YRDYSEDWSPKDSQLKVRLQEVRRLLKGRVESLERFS-ALRSLQDKLQLAEEAVSMHDENVI 230 (554)
T ss_pred HhhHhhhcccchhhHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4556666666666778888888888777776666552 445555555555555555544443
No 334
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=42.93 E-value=4.2e+02 Score=27.77 Aligned_cols=108 Identities=14% Similarity=0.208 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042557 6 ARNLVEEWKIRVEELEMQAEEAHKLKRSAS------ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKAD 79 (545)
Q Consensus 6 V~DLl~Evkkql~sLE~QAeKA~ky~elk~------lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~ 79 (545)
++.|.+||-..--+|+-.+.+--..+.... .++......+. ..+..+..++..++..+.++......|..+
T Consensus 122 ~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~---~ai~~~~~~~~~~~~~l~~l~~de~~Le~K 198 (267)
T PF10234_consen 122 ARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALK---EAIKAVQQQLQQTQQQLNNLASDEANLEAK 198 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777766665554444433 44444444333 445566777777888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 80 LDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA 116 (545)
Q Consensus 80 leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~ 116 (545)
++..+.+|+..++-+.++|+--=-+..+++.++.++.
T Consensus 199 Iekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 199 IEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 8888888888888888777766666666666666533
No 335
>PRK00736 hypothetical protein; Provisional
Probab=42.93 E-value=1.3e+02 Score=24.73 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 66 VGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFEL 108 (545)
Q Consensus 66 ve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseL 108 (545)
+..|+..++=++.-+++++..+-.-++.+..++..+.-|..++
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444333333333334444444443333
No 336
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=42.63 E-value=4.5e+02 Score=28.02 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHH
Q 042557 161 ASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLR-IVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKI 233 (545)
Q Consensus 161 a~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq-~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~ 233 (545)
+.++-.+-...+++++.....=..++.++..+..+- ..|..+..+.+.-+.+-...|.-+++.++.+......
T Consensus 33 AgA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 33 AGAWYYFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666532 2344455555555666666666666666666655543
No 337
>PRK09343 prefoldin subunit beta; Provisional
Probab=42.63 E-value=2.6e+02 Score=25.39 Aligned_cols=41 Identities=32% Similarity=0.285 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042557 170 EAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESML 210 (545)
Q Consensus 170 E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l 210 (545)
...+...++......+..+......++..+.+.+..++.++
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555666666666667777766666666544
No 338
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=42.36 E-value=5.2e+02 Score=28.72 Aligned_cols=204 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 96 EMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLE------EKHKLINELENSREEEEKSKKAMESLASALHEVSV 169 (545)
Q Consensus 96 slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~e------el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~ 169 (545)
.+.++|..|+..++....+. +...+.+..+.+ .+-....|.-.+ +-++.-.+.|++|+-.-.-
T Consensus 295 ~L~k~vQ~L~AQle~~R~q~-------e~~q~~~~s~~d~~~~~~~~~qatCERgfA-aMEetHQkkiEdLQRqHqR--- 363 (593)
T KOG4807|consen 295 ALEKEVQALRAQLEAWRLQG-------EAPQSALRSQEDGHIPPGYISQATCERGFA-AMEETHQKKIEDLQRQHQR--- 363 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhc-------cCchhhHhhhhhccCCccHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhh
Q 042557 170 EAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCV 249 (545)
Q Consensus 170 E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~i 249 (545)
+|+.++.+-++|-+.--+|-.. .|...|+.... |++.-+.-+.+-+.+.-..-
T Consensus 364 --------------ELekLreEKdrLLAEETAATiS----------AIEAMKnAhrE---EmeRELeKsqSvnsdveaLR 416 (593)
T KOG4807|consen 364 --------------ELEKLREEKDRLLAEETAATIS----------AIEAMKNAHRE---EMERELEKSQSVNSDVEALR 416 (593)
T ss_pred --------------HHHHHHHHHHhhhhhhhhhhhH----------HHHHHHHHHHH---HHHHHHHhhhccccChHHHH
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHH--------
Q 042557 250 KKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQA----RAESMKLKE-------- 317 (545)
Q Consensus 250 K~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea----~~e~~~Lk~-------- 317 (545)
|...+++.+++.+++.|-+++..+=-++..+-.-.+.-|.+|++-..+-.+.+.-..++ -+++.+|..
T Consensus 417 rQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgG 496 (593)
T KOG4807|consen 417 RQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGG 496 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCC
Q ss_pred ----------------hHHhhHHHHHHHHHHHHHHH
Q 042557 318 ----------------SFLDKETELQSVIQENEELR 337 (545)
Q Consensus 318 ----------------~l~dkE~eLq~i~~Ene~Lr 337 (545)
-|+=||++||-+.+|.-+||
T Consensus 497 tGsplaqgkdayELEVLLRVKEsEiQYLKqEissLk 532 (593)
T KOG4807|consen 497 TGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLK 532 (593)
T ss_pred CCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHH
No 339
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=41.40 E-value=3.6e+02 Score=26.64 Aligned_cols=56 Identities=27% Similarity=0.353 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 042557 50 DKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHS--MAKNETSEMAKTVESLK 105 (545)
Q Consensus 50 ~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~--~~ekEl~slqkelesLk 105 (545)
.+|..+...|..|+.+++.|..+..-.+++|..+..-|. ++++++.++.+++-...
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~ 136 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYR 136 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 577888888999999999988888888888877665544 33333333333333333
No 340
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.18 E-value=3.6e+02 Score=26.49 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 042557 181 SQTEHETYEAQIEDLRIVLK 200 (545)
Q Consensus 181 ~Q~Ele~~r~Eie~Lq~~L~ 200 (545)
+-.++..++.+...|+..|.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666665553
No 341
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=41.01 E-value=5.8e+02 Score=28.83 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 042557 252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESF 319 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l 319 (545)
+-.++++|+.++-.+.+.+.+| .+|--.|+.|+..+..|+++...+..+|.+++-.+
T Consensus 408 l~~eNk~L~~QLrDTAEAVqAa-----------gEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqi 464 (488)
T PF06548_consen 408 LKDENKGLQIQLRDTAEAVQAA-----------GELLVRLREAEEAASVAQERAMDAEQENEKAKKQI 464 (488)
T ss_pred HHHHhHHHHHHHHhHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555555444433 45666778888888888888888888888777654
No 342
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=40.81 E-value=2.4e+02 Score=24.34 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 042557 95 SEMAKTVESLK 105 (545)
Q Consensus 95 ~slqkelesLk 105 (545)
..-+..|..|-
T Consensus 63 ~~WqerLr~LL 73 (79)
T PRK15422 63 NGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 343
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=40.53 E-value=4.5e+02 Score=27.43 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=18.3
Q ss_pred hhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q 042557 240 QKELHLVDCVKKSEEENSSLEKEINRLVNLLK 271 (545)
Q Consensus 240 ~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~ 271 (545)
..+..+.+||-...+.+..+..+|..|+..+.
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~ 217 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVE 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666555555555444
No 344
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=40.31 E-value=6.2e+02 Score=29.01 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=56.2
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 042557 36 ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETS-EMAKTVESLKFE 107 (545)
Q Consensus 36 lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~-slqkelesLkse 107 (545)
.-|.+...+|.+++.+.+-..++|..|..+.+.+.+.|..|..--+..+.-+-....|+. .|.+.+--++.+
T Consensus 597 eki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEK 669 (790)
T PF07794_consen 597 EKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEK 669 (790)
T ss_pred hhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667789999999999999999999999999999999998888887776666666663 355555544433
No 345
>PLN02939 transferase, transferring glycosyl groups
Probab=40.13 E-value=8.1e+02 Score=30.32 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=13.1
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q 042557 275 EDACATKEEEAQLRDSLKEV 294 (545)
Q Consensus 275 ~~~~~~~~E~~~lr~~Lk~a 294 (545)
..++.-.++....++.|+.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~ 395 (977)
T PLN02939 376 SYIQLYQESIKEFQDTLSKL 395 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445667777778877664
No 346
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=40.11 E-value=3.5e+02 Score=26.11 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 56 ESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 56 esEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
++.|...-+....++.++.+....+.-.+..+..+..++..+.+.+..|.+.++.+-.+
T Consensus 43 ne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d 101 (157)
T COG3352 43 NEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRD 101 (157)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666666666666666666666666666666666666666666665555
No 347
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.11 E-value=3.1e+02 Score=30.99 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 042557 269 LLKETEEDACATKEEEAQLRDSLKEVEAEV 298 (545)
Q Consensus 269 ~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~ 298 (545)
.+.....+...+..||+.||......-..+
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 333344444466677777766554443333
No 348
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.88 E-value=4.2e+02 Score=26.93 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557 144 ENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 144 E~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
....+...+.+...+.....|+.+.......+-..+..+.|.+.+-.+...|+..+
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33333333334333444444444444444444444455555555555555544443
No 349
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=39.83 E-value=4.1e+02 Score=26.80 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557 264 NRLVNLLKETEEDACATKEEEAQLRDSL 291 (545)
Q Consensus 264 ~~l~e~l~~~E~~~~~~~~E~~~lr~~L 291 (545)
..|...|+..|.++-+|..++.+..-.+
T Consensus 60 ~~L~~~LrEkEErILaLEad~~kWEqkY 87 (205)
T PF12240_consen 60 SNLKELLREKEERILALEADMTKWEQKY 87 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999988887766
No 350
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=39.72 E-value=3.3e+02 Score=25.66 Aligned_cols=93 Identities=14% Similarity=0.261 Sum_probs=59.7
Q ss_pred hHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh-----
Q 042557 244 HLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKES----- 318 (545)
Q Consensus 244 ~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~----- 318 (545)
++++.|...+.-.+.+-.++.+.....-+..+++..+.+|.-.|..+|..-..-+...+.-..+..++..+--..
T Consensus 10 ~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~~~eck 89 (134)
T PF15233_consen 10 DLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTLLQECK 89 (134)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 456666666665555555565555555556677788888888888888666666666666666554444433332
Q ss_pred -HHhhHHHHHHHHHHHHHH
Q 042557 319 -FLDKETELQSVIQENEEL 336 (545)
Q Consensus 319 -l~dkE~eLq~i~~Ene~L 336 (545)
.++-|..|..+..-+-+|
T Consensus 90 ~R~~fe~qLE~lm~qHKdL 108 (134)
T PF15233_consen 90 LRLDFEEQLEDLMGQHKDL 108 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 567777777777766664
No 351
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.34 E-value=3.6e+02 Score=26.99 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=21.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042557 250 KKSEEENSSLEKEINRLVNLLKETEEDACA 279 (545)
Q Consensus 250 K~~eee~~~~~~e~~~l~e~l~~~E~~~~~ 279 (545)
+-..=|...|+.|+..|-..+..+++....
T Consensus 92 ~~~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 92 EGTDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334557778888888888887777766554
No 352
>PF15456 Uds1: Up-regulated During Septation
Probab=38.77 E-value=3.2e+02 Score=25.25 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=43.4
Q ss_pred HHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHH
Q 042557 25 EEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLD----ESERKHSMAKNETSEMAKT 100 (545)
Q Consensus 25 eKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~le----E~k~eL~~~ekEl~slqke 100 (545)
-.+..|.-+....+..+.+++..+...++-+...++ |..+++..-..+.++-..-. -....+...+.++......
T Consensus 11 ~ds~~feiLs~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk 89 (124)
T PF15456_consen 11 GDSKEFEILSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRK 89 (124)
T ss_pred HHHHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhh
Confidence 345666666656666555655555555555555555 44555444444444311110 0012233444455555555
Q ss_pred HHHHHHHHHHHHHH
Q 042557 101 VESLKFELETVKEE 114 (545)
Q Consensus 101 lesLkseLe~~eee 114 (545)
++.+..+|..+++.
T Consensus 90 ~ee~~~eL~~le~R 103 (124)
T PF15456_consen 90 CEELAQELWKLENR 103 (124)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554444
No 353
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=38.64 E-value=3.6e+02 Score=25.74 Aligned_cols=9 Identities=11% Similarity=0.187 Sum_probs=3.5
Q ss_pred HHhHHHHHH
Q 042557 210 LDDAKHEIG 218 (545)
Q Consensus 210 l~ea~~e~~ 218 (545)
+.+|+.++.
T Consensus 106 ~~~A~~e~~ 114 (174)
T PRK07352 106 EKQAIEDMA 114 (174)
T ss_pred HHHHHHHHH
Confidence 334433333
No 354
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=38.54 E-value=2.8e+02 Score=24.55 Aligned_cols=40 Identities=35% Similarity=0.309 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042557 171 AREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESML 210 (545)
Q Consensus 171 ~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l 210 (545)
......++..+...+..+......++..+.+.+.+++.+|
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455555555555556666655555555443
No 355
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.32 E-value=6.1e+02 Score=28.37 Aligned_cols=186 Identities=17% Similarity=0.129 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-HhhHHHHHHHHHHHHHHH
Q 042557 65 KVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE-------KAQA-LNNEKLAASSVQNLLEEK 136 (545)
Q Consensus 65 Kve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee-------l~el-~ekEk~lsseIe~L~eel 136 (545)
++.++.+++.+...+-.+....+.+.+..+..+...+..+......+..+ .... -.....+..-+..|.+..
T Consensus 153 ~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~ 232 (446)
T KOG4438|consen 153 KYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENA 232 (446)
T ss_pred HHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555544444444444445544444444444333333333222 1100 111133333344444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 042557 137 HKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHE 216 (545)
Q Consensus 137 ~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e 216 (545)
+.|..-+- .--++.+++.+++..-|..-.....+..++...++..++.++.=..++.+.+.-+..-. +.++.-++.
T Consensus 233 ~~LktqIV---~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~-~e~d~~Et~ 308 (446)
T KOG4438|consen 233 NCLKTQIV---QSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDG-VEYDSLETK 308 (446)
T ss_pred HHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhh-hhhhhhHHH
Confidence 33333222 22355556666666666666666666666666666667666666666666665444332 223333333
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHH
Q 042557 217 IGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLE 260 (545)
Q Consensus 217 ~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~ 260 (545)
...++.. .+++.... .+..+.++++..-.+-.++..++
T Consensus 309 ~v~lke~-----~~Le~q~e-~~~~e~~~lk~~e~~~kqL~~~~ 346 (446)
T KOG4438|consen 309 VVELKEI-----LELEDQIE-LNQLELEKLKMFENLTKQLNELK 346 (446)
T ss_pred HHHHHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333321 22233332 55556665554444444444444
No 356
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=37.87 E-value=7.5e+02 Score=29.28 Aligned_cols=193 Identities=11% Similarity=0.100 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 042557 5 YARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESE 84 (545)
Q Consensus 5 RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k 84 (545)
.|.|+..+|++.+..++.|++-|=.|+++...=|..+..+++.+....=+.+.. +....-+ -..++-+
T Consensus 99 ~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~------R~~Sp~~----~~lp~~~-- 166 (683)
T PF08580_consen 99 EVSQMELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEK------RHSSPVR----HGLPIFE-- 166 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HccCCcc----cCCCccc--
Confidence 467888899999999999999999999998877777777777655444333221 1111100 0001100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 85 RKHSMAKNETSEMAKTVESLKFELETVKEE--KAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLAS 162 (545)
Q Consensus 85 ~eL~~~ekEl~slqkelesLkseLe~~eee--l~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~ 162 (545)
|..-|..+.+........ +=-+...+..+...+-.|..+++=+...|+.+=.+++.....
T Consensus 167 ------------Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~r------ 228 (683)
T PF08580_consen 167 ------------LETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSR------ 228 (683)
T ss_pred ------------HHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH------
Confidence 010011110000000000 000122234455566666667777777777776666555422
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHh
Q 042557 163 ALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKD 229 (545)
Q Consensus 163 AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~ 229 (545)
+-.-+-...+.+..++..+......+..+++.|+..| .+.|.-.++.-|..++......|++...
T Consensus 229 a~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~EL--iedRW~~vFr~l~~q~~~m~esver~~~ 293 (683)
T PF08580_consen 229 AESIFPSACEELEDRYERLEKKWKKLEKEAESLKKEL--IEDRWNIVFRNLGRQAQKMCESVERSLS 293 (683)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233444444555555555555555555566655555 4455566666666666666666666443
No 357
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=37.66 E-value=4.2e+02 Score=26.28 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=6.8
Q ss_pred HHHHHHHHhHHhHHHHHH
Q 042557 201 ATNEKYESMLDDAKHEIG 218 (545)
Q Consensus 201 ~aE~k~~~~l~ea~~e~~ 218 (545)
.|......++..|+.+|.
T Consensus 137 ~A~~eae~ii~~A~~~Ie 154 (205)
T PRK06231 137 EANRQANLIIFQARQEIE 154 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 358
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=37.34 E-value=4.2e+02 Score=26.19 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557 135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQ 182 (545)
Q Consensus 135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q 182 (545)
.+..+...|-.++.+.....+.++.....+..+.+.+..+.+.+..+.
T Consensus 132 ~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 132 EIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333343444444444445555555554444443
No 359
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.30 E-value=8e+02 Score=29.41 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=26.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhcccc-------ccCccccccccc-cccchhhhh
Q 042557 339 READSVKKVEELSSLLEEAMAKKQTA-------ENGELTDSEKDY-DLLPKVVEF 385 (545)
Q Consensus 339 ~Ea~a~~~i~EL~~ll~ea~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~ 385 (545)
+--++..++.+|.+.|+.|...-... -.|.|-.-..+| .-.|.|..|
T Consensus 699 ~G~~~~eA~~~l~~~ld~a~~~g~~~v~IIHGkGtG~Lr~~v~~~L~~~~~V~~f 753 (771)
T TIGR01069 699 RGQRSEEALDRLEKFLNDALLAGYEVVLIIHGKGSGKLRKGVQELLKNHPKVKSF 753 (771)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEcCCChhHHHHHHHHHhcCCcceeee
Confidence 34445555678888888887654332 235554334455 445656555
No 360
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=37.07 E-value=3e+02 Score=24.44 Aligned_cols=24 Identities=25% Similarity=0.136 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 042557 120 NNEKLAASSVQNLLEEKHKLINEL 143 (545)
Q Consensus 120 ekEk~lsseIe~L~eel~kl~~EL 143 (545)
.++..+...-..|.........=|
T Consensus 32 ~~e~~L~~~e~~l~~~~~~f~~fl 55 (126)
T PF13863_consen 32 QREEELEKKEQELEEDVIKFDKFL 55 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333
No 361
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=36.80 E-value=6.8e+02 Score=28.42 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 042557 265 RLVNLLKETEEDACATKEEEAQLRDSLK 292 (545)
Q Consensus 265 ~l~e~l~~~E~~~~~~~~E~~~lr~~Lk 292 (545)
=+.+++..-+.++..+-.+..+-|..|+
T Consensus 144 Pl~e~l~~f~~~v~~~~~~~~~~~~~L~ 171 (475)
T PRK10361 144 PLREQLDGFRRQVQDSFGKEAQERHTLA 171 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444443
No 362
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=36.72 E-value=3.1e+02 Score=24.42 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHh
Q 042557 252 SEEENSSLEKEINRLVNLLKETEEDACAT--KEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLD 321 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~--~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~d 321 (545)
..+++..+...+......+...|.++..+ +++...|+..|..+..++.....++.-....+.-|-+..++
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~lk 104 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLENELK 104 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666666666777777777777777 77777777777777777777777776666666655555443
No 363
>PF15456 Uds1: Up-regulated During Septation
Probab=35.80 E-value=3.6e+02 Score=24.94 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 147 REEEEKSKKAMESLASALHEVSVEAREAKEKLL 179 (545)
Q Consensus 147 ~~eeEkekka~EeLa~AL~E~e~E~eeakekl~ 179 (545)
..++......+++++..|..++.-+-+++.++.
T Consensus 80 eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLL 112 (124)
T PF15456_consen 80 EEELAESDRKCEELAQELWKLENRLAEVRQRLL 112 (124)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666666555555544
No 364
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.71 E-value=3.2e+02 Score=24.32 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042557 55 AESEIAALKEKVGLLEMTIGRQ 76 (545)
Q Consensus 55 aesEI~~LqeKve~LE~ev~~l 76 (545)
+...+.....++..++..+..+
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3333333344444343333333
No 365
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=35.51 E-value=5.1e+02 Score=26.67 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 165 HEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEK 205 (545)
Q Consensus 165 ~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k 205 (545)
..++..+..+...+..++..+..+..++..++..+..++..
T Consensus 83 ~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~ 123 (334)
T TIGR00998 83 AKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREK 123 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444444444444443
No 366
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=35.35 E-value=1.1e+02 Score=33.04 Aligned_cols=8 Identities=13% Similarity=0.156 Sum_probs=4.5
Q ss_pred CCCChhhH
Q 042557 512 SSPSKQQQ 519 (545)
Q Consensus 512 ~~~~k~q~ 519 (545)
-+|+.+|.
T Consensus 330 ~~F~~~~~ 337 (370)
T PF02994_consen 330 KSFTDPEE 337 (370)
T ss_dssp EEESSHHH
T ss_pred ecCCCHHH
Confidence 36666653
No 367
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=35.29 E-value=1.6e+02 Score=26.91 Aligned_cols=45 Identities=31% Similarity=0.339 Sum_probs=24.6
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557 247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL 291 (545)
Q Consensus 247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L 291 (545)
+.|-.+++.+..+-+++..++..+...=.+..+++=||+.||..|
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 444455666666666666555555544444445555555555554
No 368
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=35.24 E-value=2.5e+02 Score=22.95 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 042557 104 LKFELETVKEEKAQALNNEKLAASSVQNLLEEK 136 (545)
Q Consensus 104 LkseLe~~eeel~el~ekEk~lsseIe~L~eel 136 (545)
.+...-.++..+..+..+...+..+|..|..++
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444333
No 369
>PRK12704 phosphodiesterase; Provisional
Probab=35.16 E-value=7.3e+02 Score=28.30 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 81 DESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 81 eE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
+.-...|...++++......|.....+++....+
T Consensus 99 e~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~ 132 (520)
T PRK12704 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444443333
No 370
>PRK14147 heat shock protein GrpE; Provisional
Probab=35.05 E-value=3.8e+02 Score=26.05 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557 159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED 194 (545)
Q Consensus 159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~ 194 (545)
.+...|..+..++.+.+.++.+++++++++|....+
T Consensus 22 ~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~k 57 (172)
T PRK14147 22 PLKAEVESLRSEIALVKADALRERADLENQRKRIAR 57 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777778888888888888888888877666
No 371
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=34.98 E-value=3.7e+02 Score=24.83 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=7.5
Q ss_pred HHHHHHHHhHHhHHHHHHH
Q 042557 201 ATNEKYESMLDDAKHEIGL 219 (545)
Q Consensus 201 ~aE~k~~~~l~ea~~e~~~ 219 (545)
.|+.-+...+..|+.++.+
T Consensus 82 ea~~~~~~~~~~a~~ea~~ 100 (156)
T PRK05759 82 RAAQIIEEAKAEAEAEAAR 100 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444333
No 372
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=34.94 E-value=4.1e+02 Score=25.37 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=6.9
Q ss_pred HHHHHHhHHhHHHHHHH
Q 042557 203 NEKYESMLDDAKHEIGL 219 (545)
Q Consensus 203 E~k~~~~l~ea~~e~~~ 219 (545)
+.-+...+.+|+.++.+
T Consensus 102 e~~~~~ii~~A~~ea~~ 118 (167)
T PRK08475 102 YILTQKIEKQTKDDIEN 118 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444443
No 373
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=34.70 E-value=5e+02 Score=26.27 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 56 ESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLK 105 (545)
Q Consensus 56 esEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLk 105 (545)
-+.|..|+..+..++..+......+.+++..+..+-..-+..|.+|+.|-
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LL 80 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELL 80 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666655555555555555554
No 374
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=34.66 E-value=4.5e+02 Score=25.77 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042557 123 KLAASSVQNLLEEKHKLINELE 144 (545)
Q Consensus 123 k~lsseIe~L~eel~kl~~ELE 144 (545)
+...++|..+......+...|+
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555544
No 375
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=34.54 E-value=2.2e+02 Score=29.46 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 042557 264 NRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKES 318 (545)
Q Consensus 264 ~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~ 318 (545)
.++-..+++.+.+.+.|+.||+.||.+=+-+.++-.+.--.+++.+.+.+.|+..
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 3344445555556667777888888888877777777878888888777777654
No 376
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=34.25 E-value=5.5e+02 Score=26.67 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 042557 252 SEEENSSLEKEINRLVNLLK 271 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~ 271 (545)
+..++...+..+......+.
T Consensus 143 s~~~~~~~~~~~~~a~~~~~ 162 (331)
T PRK03598 143 SANDLENARSSRDQAQATLK 162 (331)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333
No 377
>PF14992 TMCO5: TMCO5 family
Probab=34.22 E-value=5e+02 Score=27.42 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 042557 1 MAESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEI----AALKEKVGLLEMTIGRQ 76 (545)
Q Consensus 1 ~~e~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI----~~LqeKve~LE~ev~~l 76 (545)
++|.-+..|..||-+-.+.+.+. +.-+....-+.-.+ +.++.-...|+.-+... ..||.++..-... .
T Consensus 29 ~~E~~iq~Le~Eit~~~~~~~~~-e~e~~~~~~~e~~l----~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~---~ 100 (280)
T PF14992_consen 29 EKEGAIQSLEREITKMDHIADRS-EEEDIISEERETDL----QELELETAKLEKENEHLSKSVQELQRKQDEQETN---V 100 (280)
T ss_pred HHHHHHHHHHHHHHHHccccCch-hHHhhhhhchHHHH----HHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCC---C
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 77 KADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENS 146 (545)
Q Consensus 77 e~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~ 146 (545)
..+-..++..+..++..+..+...+.++..+|..+..+..+...-.......|..+++.+.++..+.+-.
T Consensus 101 ~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 101 QCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred CCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 378
>PRK12704 phosphodiesterase; Provisional
Probab=34.02 E-value=7.6e+02 Score=28.17 Aligned_cols=15 Identities=13% Similarity=0.016 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHh
Q 042557 300 YMQETLGQARAESMK 314 (545)
Q Consensus 300 ea~e~~~ea~~e~~~ 314 (545)
.|..+.++|+.....
T Consensus 147 ~a~lt~~ea~~~l~~ 161 (520)
T PRK12704 147 ISGLTAEEAKEILLE 161 (520)
T ss_pred HhCCCHHHHHHHHHH
Confidence 455566666655543
No 379
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.74 E-value=2.4e+02 Score=22.39 Aligned_cols=9 Identities=11% Similarity=0.268 Sum_probs=3.8
Q ss_pred HHHHHHHhH
Q 042557 26 EAHKLKRSA 34 (545)
Q Consensus 26 KA~ky~elk 34 (545)
.|.+|+.-+
T Consensus 16 AAr~~R~RK 24 (64)
T PF00170_consen 16 AARRSRQRK 24 (64)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 380
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.52 E-value=4e+02 Score=24.81 Aligned_cols=49 Identities=8% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKY 206 (545)
Q Consensus 158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~ 206 (545)
+.+-..|.+...-....+..+...+..+.+++.++..++.+...-+.|+
T Consensus 71 d~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 71 DRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555556666666666666666665555553
No 381
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.34 E-value=4.8e+02 Score=25.63 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=6.7
Q ss_pred HHHhhHHHHHHHHHHHH
Q 042557 177 KLLSSQTEHETYEAQIE 193 (545)
Q Consensus 177 kl~~~Q~Ele~~r~Eie 193 (545)
++..++.++..++.++.
T Consensus 111 ~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 111 ELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444444
No 382
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=33.21 E-value=4.5e+02 Score=25.28 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=15.6
Q ss_pred HHHhhhhhHHHhhHhhHHHHHHHHHHHHHH
Q 042557 237 EWEQKELHLVDCVKKSEEENSSLEKEINRL 266 (545)
Q Consensus 237 ~~~~kE~~~~~~iK~~eee~~~~~~e~~~l 266 (545)
.....+..+..+-.+...++..++.+++.+
T Consensus 121 e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 121 EQAKQELKIQELNNKIDTEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555556666666666543
No 383
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=33.05 E-value=3e+02 Score=23.22 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 90 AKNETSEMAKTVESLKFELETVKEEKA 116 (545)
Q Consensus 90 ~ekEl~slqkelesLkseLe~~eeel~ 116 (545)
.+..+..++++-+.|+-+|--+++.+.
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344566677777777777776666644
No 384
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=32.74 E-value=4.7e+02 Score=25.33 Aligned_cols=20 Identities=15% Similarity=0.234 Sum_probs=8.7
Q ss_pred HHHHHHHHHhHHhHHHHHHH
Q 042557 200 KATNEKYESMLDDAKHEIGL 219 (545)
Q Consensus 200 ~~aE~k~~~~l~ea~~e~~~ 219 (545)
..++..+...+.+|+.++..
T Consensus 108 ~ea~~~~~~~~~~A~~e~~~ 127 (181)
T PRK13454 108 AEIQAELDVAIAKADAEIAA 127 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 385
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=32.64 E-value=4.5e+02 Score=25.09 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=3.5
Q ss_pred HHhHHHHHH
Q 042557 210 LDDAKHEIG 218 (545)
Q Consensus 210 l~ea~~e~~ 218 (545)
+.+|+.++.
T Consensus 105 ~~~A~~ea~ 113 (175)
T PRK14472 105 TEKAHTEAK 113 (175)
T ss_pred HHHHHHHHH
Confidence 334433333
No 386
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=32.62 E-value=3.5e+02 Score=23.90 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=5.9
Q ss_pred HHHHHHHhHHhHHHHH
Q 042557 202 TNEKYESMLDDAKHEI 217 (545)
Q Consensus 202 aE~k~~~~l~ea~~e~ 217 (545)
++.....++..|..+|
T Consensus 89 a~~~~~~~~~~a~~~i 104 (132)
T PF00430_consen 89 AEKEAERIIEQAEAEI 104 (132)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 387
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=32.62 E-value=4.6e+02 Score=25.24 Aligned_cols=101 Identities=21% Similarity=0.207 Sum_probs=47.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557 43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE 122 (545)
Q Consensus 43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE 122 (545)
-.|+.+...-...+.++..|+.....|..+..+-+..-..+...+...+. ....+...|...+..++.+...+..+-
T Consensus 36 E~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed---~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 36 ELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELED---QWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555566666666666665554433333333333333332 233333344444555555544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 123 KLAASSVQNLLEEKHKLINELENS 146 (545)
Q Consensus 123 k~lsseIe~L~eel~kl~~ELE~~ 146 (545)
+.+++.+..+.+.-..+..++..+
T Consensus 113 ~~~~~q~~rlee~e~~l~~e~~~l 136 (158)
T PF09744_consen 113 KNLSDQSSRLEEREAELKKEYNRL 136 (158)
T ss_pred hhhhhhccccchhHHHHHHHHHHH
Confidence 455555444444433344343333
No 388
>PLN03188 kinesin-12 family protein; Provisional
Probab=32.61 E-value=1.2e+03 Score=29.91 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 121 NEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAM 157 (545)
Q Consensus 121 kEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~ 157 (545)
-+.+.-.+-.+|.++.+.|...=..+++.+..+++|.
T Consensus 1108 ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaa 1144 (1320)
T PLN03188 1108 GHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAA 1144 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777766666666666666554
No 389
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=32.21 E-value=3.9e+02 Score=26.43 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 130 QNLLEEKHKLINELENSREEEEKSK 154 (545)
Q Consensus 130 e~L~eel~kl~~ELE~~~~eeEkek 154 (545)
..+.++++.|..+....+.++.+.+
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 390
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=32.17 E-value=2.7e+02 Score=22.48 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 042557 52 LHDAESEIAALKEKVGLLEMTIGRQKADL 80 (545)
Q Consensus 52 LeeaesEI~~LqeKve~LE~ev~~le~~l 80 (545)
+..+.+.|..|..++..|...|..+..++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 391
>PRK11519 tyrosine kinase; Provisional
Probab=31.70 E-value=9.1e+02 Score=28.42 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 042557 189 EAQIEDLRIVLKATNEKYESML 210 (545)
Q Consensus 189 r~Eie~Lq~~L~~aE~k~~~~l 210 (545)
..++.+|+...+.++.-|..+|
T Consensus 369 e~~~~~L~Re~~~~~~lY~~lL 390 (719)
T PRK11519 369 QQEIVRLTRDVESGQQVYMQLL 390 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555443
No 392
>PF13166 AAA_13: AAA domain
Probab=31.18 E-value=8.8e+02 Score=28.04 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 042557 52 LHDAESEIAALKEKVG 67 (545)
Q Consensus 52 LeeaesEI~~LqeKve 67 (545)
...+...+..+...+.
T Consensus 324 ~~~~~~~~~~l~~~l~ 339 (712)
T PF13166_consen 324 KEELKSAIEALKEELE 339 (712)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444433333
No 393
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=31.07 E-value=1.6e+02 Score=30.80 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHH
Q 042557 279 ATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFL 320 (545)
Q Consensus 279 ~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~ 320 (545)
.+.+||.+||..+-++..+.. ....++..||.+|+.-|.
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~---~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLE---ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 344455555554433322222 123447788888887553
No 394
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.72 E-value=6.1e+02 Score=29.20 Aligned_cols=144 Identities=20% Similarity=0.229 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhH--HHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHH
Q 042557 190 AQIEDLRIVLKATNEKYESMLDDA--KHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLV 267 (545)
Q Consensus 190 ~Eie~Lq~~L~~aE~k~~~~l~ea--~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~ 267 (545)
..++.++..++..+.++...+.+. ..++..+++.|+.+.. ........|.+.-+++..++.++...+
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~-----------~~ik~p~~i~~~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK-----------KDIKNPLELQKIKEEFDKLKKEGKADK 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh-----------ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666665555444444 4455555555555333 122222233444445555555554444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHH--HHHHhhHHHHHH
Q 042557 268 NLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQEN--EELRAREADSVK 345 (545)
Q Consensus 268 e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~En--e~Lr~~Ea~a~~ 345 (545)
+.++ .++.+....+..+++--.++..| - ..+..+|+....=....+.++++.+ +.++..=.-+..
T Consensus 233 ~~i~-------~~~~~l~~~~~~~~~~~~~lk~a---p---~~D~~~L~~~~~~~~~~~~~~~~~L~g~~i~~~~~~~~~ 299 (555)
T TIGR03545 233 QKIK-------SAKNDLQNDKKQLKADLAELKKA---P---QNDLKRLENKYAIKSGDLKNFAVDLFGPEIRKYLQKFLK 299 (555)
T ss_pred HHHH-------HHHHHHHHhHHHHHHHHHHHHhc---c---HhHHHHHHHHhCCCcccHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444 33444444443333322222111 1 3455555555444555566666654 345555555565
Q ss_pred hHHHHHHHHHHH
Q 042557 346 KVEELSSLLEEA 357 (545)
Q Consensus 346 ~i~EL~~ll~ea 357 (545)
--.-+.-++.-+
T Consensus 300 ~y~~~~p~i~~~ 311 (555)
T TIGR03545 300 YYDQAEPLLNKS 311 (555)
T ss_pred HHHHHhHhhccc
Confidence 555555555544
No 395
>PRK02119 hypothetical protein; Provisional
Probab=30.53 E-value=2.2e+02 Score=23.79 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557 50 DKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMA 90 (545)
Q Consensus 50 ~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ 90 (545)
..+.+++..++-+.+-+..|...|.++...|+.+...+..+
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433
No 396
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=30.48 E-value=4.4e+02 Score=24.33 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=7.0
Q ss_pred HHHHHHHhHHhHHHHHHH
Q 042557 202 TNEKYESMLDDAKHEIGL 219 (545)
Q Consensus 202 aE~k~~~~l~ea~~e~~~ 219 (545)
|+.....+...|..++..
T Consensus 94 a~~ea~~~~~~a~~~i~~ 111 (156)
T PRK05759 94 AEAEAARIKAQAQAEIEQ 111 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444443333
No 397
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=30.44 E-value=4.8e+02 Score=24.82 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=9.5
Q ss_pred HHHHHHHHHhHHhHHHHHHHH
Q 042557 200 KATNEKYESMLDDAKHEIGLL 220 (545)
Q Consensus 200 ~~aE~k~~~~l~ea~~e~~~l 220 (545)
..|+.....++..|+.+|...
T Consensus 107 ~~A~~e~~~~~~~a~~~i~~e 127 (174)
T PRK07352 107 KQAIEDMARLKQTAAADLSAE 127 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 398
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.19 E-value=2.2e+02 Score=23.38 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557 55 AESEIAALKEKVGLLEMTIGRQKADLDESERKHSMA 90 (545)
Q Consensus 55 aesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ 90 (545)
++..++-+..-+..|...|..+...|+.+...+..+
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444443333333
No 399
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=30.08 E-value=8.1e+02 Score=27.29 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 042557 38 LDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNET 94 (545)
Q Consensus 38 L~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl 94 (545)
+-.--++++++.-+|.-+..++..-+...+..+.+-.....++.....+-..++.++
T Consensus 69 lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~ 125 (499)
T COG4372 69 LRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQEL 125 (499)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666666666666666665555555544333334444333333333333
No 400
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.07 E-value=2.4e+02 Score=22.74 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=11.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 47 GNNDKLHDAESEIAALKEKVGLLEMTIGR 75 (545)
Q Consensus 47 ~lk~~LeeaesEI~~LqeKve~LE~ev~~ 75 (545)
.++..+..++.+++.++.++..|..++..
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443333333333
No 401
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=30.07 E-value=3.7e+02 Score=23.34 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 123 KLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSV 169 (545)
Q Consensus 123 k~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~ 169 (545)
..+..+|..+.....++..+|+.+..+....+.+-.++...|..+-.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e 81 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIE 81 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888889999998888887777766666666654433
No 402
>PRK14154 heat shock protein GrpE; Provisional
Probab=29.72 E-value=6e+02 Score=25.65 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557 158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
+.|...|..++.++.+.+.++.+++++++++|..+.+-+..+
T Consensus 55 ~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~ 96 (208)
T PRK14154 55 EKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADI 96 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677778888888888999999999999888777644433
No 403
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=29.69 E-value=4.4e+02 Score=24.16 Aligned_cols=133 Identities=18% Similarity=0.177 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHH
Q 042557 183 TEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKE 262 (545)
Q Consensus 183 ~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e 262 (545)
..+..+..++...+..+......++.++.........+...++.+..-+..-...|..+...|..++.....- ..+..
T Consensus 40 ~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~-~~~~~- 117 (213)
T cd00176 40 KKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFF-RDADD- 117 (213)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-
Confidence 3444555555555666666666666666666566777888888888888888888888777776666544322 11111
Q ss_pred HHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHH
Q 042557 263 INRLVNLLKETEEDACAT-----KEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFL 320 (545)
Q Consensus 263 ~~~l~e~l~~~E~~~~~~-----~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~ 320 (545)
+..-+..++..+... ......+...++....++......+..+......|.....
T Consensus 118 ---l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (213)
T cd00176 118 ---LEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGH 177 (213)
T ss_pred ---HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCC
Confidence 444444444433322 2344445555555666666666666666555555554443
No 404
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=29.50 E-value=5.1e+02 Score=24.77 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=6.8
Q ss_pred HHHHHHHhHHhHHHHHH
Q 042557 202 TNEKYESMLDDAKHEIG 218 (545)
Q Consensus 202 aE~k~~~~l~ea~~e~~ 218 (545)
++..+...+.+|+.++.
T Consensus 97 a~~~~~~~~~~A~~ea~ 113 (173)
T PRK13453 97 ARQQQEQIIHEANVRAN 113 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333434444444433
No 405
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=29.16 E-value=6e+02 Score=25.48 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 042557 278 CATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEE 356 (545)
Q Consensus 278 ~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~e 356 (545)
..+..|..-|...+...+.++.-+..+...++..---++..+...+..++.|+.-....|..++. ..+.+...+...
T Consensus 153 ~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae--~~~~~a~~~~~~ 229 (240)
T PF12795_consen 153 WLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAE--QAVEEAEQLQEE 229 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34444444444444445555555555666666666667777777777888888888887776643 446666666554
No 406
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=29.04 E-value=7.1e+02 Score=26.34 Aligned_cols=32 Identities=9% Similarity=0.233 Sum_probs=18.7
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 042557 36 ESLDAVMRQLEGNNDKLHDAESEIAALKEKVG 67 (545)
Q Consensus 36 lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve 67 (545)
..+..+..++..++..|..++..+...+.+..
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 201 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNK 201 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455556666666666666666666555443
No 407
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=29.01 E-value=7e+02 Score=26.25 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=13.4
Q ss_pred HhHHHhHHhhHHHHHHHHHHHHHH
Q 042557 313 MKLKESFLDKETELQSVIQENEEL 336 (545)
Q Consensus 313 ~~Lk~~l~dkE~eLq~i~~Ene~L 336 (545)
.-|...|...+.++|.+...++-+
T Consensus 281 liLQq~Lketr~~Iq~l~k~~~q~ 304 (330)
T KOG2991|consen 281 LILQQKLKETRKEIQRLKKGLEQV 304 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666665543
No 408
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=28.72 E-value=2.3e+02 Score=25.71 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhHHHhHHhhHHHHHHHHHHHHH-HHhhHHHHHHhHHHHHHHHHHHHhhccccccCcc-
Q 042557 293 EVEAEVIYMQETLGQA-RAESMKLKESFLDKETELQSVIQENEE-LRAREADSVKKVEELSSLLEEAMAKKQTAENGEL- 369 (545)
Q Consensus 293 ~ae~e~~ea~e~~~ea-~~e~~~Lk~~l~dkE~eLq~i~~Ene~-Lr~~Ea~a~~~i~EL~~ll~ea~~~~~~~~~~~~- 369 (545)
++.+.-..|.+.+++| +.-..+||.++.+-+.++-.....-|. ++..+..+......+..=++.-+..+...=.+..
T Consensus 10 QLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~~~ 89 (108)
T KOG1772|consen 10 QLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDKIAGLKTSAQ 89 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445577888888 668889999999999998888888776 8999999888888888777766654433311111
Q ss_pred ccccccccccchhhhh
Q 042557 370 TDSEKDYDLLPKVVEF 385 (545)
Q Consensus 370 ~~~~~~~~~~~~~~~~ 385 (545)
..+++.-++|.++||-
T Consensus 90 k~~~~Vv~~LL~~V~~ 105 (108)
T KOG1772|consen 90 KNSDDVVDMLLKYVCD 105 (108)
T ss_pred HhhHHHHHHHHHHhcc
Confidence 2234444777777764
No 409
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=28.68 E-value=1.6e+02 Score=31.85 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 126 ASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEV 167 (545)
Q Consensus 126 sseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~ 167 (545)
.+.|..+.+.+..+...+..+...+....+.+..+...|.++
T Consensus 143 ~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 143 NSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333333333333333333
No 410
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.63 E-value=3.6e+02 Score=22.91 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 61 ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVK 112 (545)
Q Consensus 61 ~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~e 112 (545)
.|..++..|+..++-++.-|++++..+-+-+..+..++..+.-|..++..++
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556666677777777777777777666666666666666666666555544
No 411
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=28.63 E-value=5.6e+02 Score=24.98 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH---hhHHHHHHHHhhhhhhHHHH
Q 042557 10 VEEWKIRVEELEMQAEEAHKLKRSAS---ESLDAVMRQLEGNNDKLHDA 55 (545)
Q Consensus 10 l~Evkkql~sLE~QAeKA~ky~elk~---lSL~l~t~eLE~lk~~Leea 55 (545)
+.+.+..+..|+.++..+.+...... -.+.....+|-.....|...
T Consensus 26 F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~ 74 (236)
T PF09325_consen 26 FEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKS 74 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45566667777777777666444443 44444445555444444333
No 412
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.57 E-value=5.9e+02 Score=25.19 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 042557 158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLR 196 (545)
Q Consensus 158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq 196 (545)
+.+...|..+..++.+.+.++.+.+++++++|....+=+
T Consensus 35 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~ 73 (185)
T PRK14139 35 PALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDV 73 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777888888888888888888887776633
No 413
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=28.49 E-value=3e+02 Score=22.48 Aligned_cols=23 Identities=26% Similarity=0.240 Sum_probs=10.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHH
Q 042557 74 GRQKADLDESERKHSMAKNETSE 96 (545)
Q Consensus 74 ~~le~~leE~k~eL~~~ekEl~s 96 (545)
...+..|+++...|.+++-|++.
T Consensus 28 ~~~e~~l~ea~~~l~qMe~E~~~ 50 (79)
T PF05008_consen 28 REIERDLDEAEELLKQMELEVRS 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444433
No 414
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.22 E-value=4.8e+02 Score=24.12 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 129 VQNLLEEKHKLINELENSREEEEKSKKAMESLASALHE 166 (545)
Q Consensus 129 Ie~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E 166 (545)
+.+|.+++..+..++..+..+.+..+..++.|.++|..
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566655555555555555555544
No 415
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=28.09 E-value=1.1e+03 Score=28.17 Aligned_cols=102 Identities=23% Similarity=0.317 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHH
Q 042557 256 NSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVI-YMQETLGQARAESMKLKESFLDKETELQSVIQENE 334 (545)
Q Consensus 256 ~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~-ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene 334 (545)
+...+..+..+..+|..++.-.+....+-..||.-|-.-...+. ..++++.+.. ++|.+.|.+.|.-|.....|+-
T Consensus 530 Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevE---srl~E~L~~~E~rLNeARREHt 606 (739)
T PF07111_consen 530 LQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVE---SRLREQLSEMEKRLNEARREHT 606 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444422222221 3333443332 3566677777777777777665
Q ss_pred H----HHhhHHHH---HHhHHHHHHHHHHHHhh
Q 042557 335 E----LRAREADS---VKKVEELSSLLEEAMAK 360 (545)
Q Consensus 335 ~----Lr~~Ea~a---~~~i~EL~~ll~ea~~~ 360 (545)
- ||-.+-.| +....|+-++-++|..+
T Consensus 607 KaVVsLRQ~qrqa~reKer~~E~~~lq~e~~~~ 639 (739)
T PF07111_consen 607 KAVVSLRQIQRQAAREKERNQELRRLQEEARKE 639 (739)
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Confidence 5 66666444 34567788888887654
No 416
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.07 E-value=3.2e+02 Score=22.05 Aligned_cols=43 Identities=7% Similarity=0.165 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557 157 MESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 157 ~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
++.|...+..+...+.++...+..++.++..++.|+.+-...|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444
No 417
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=28.03 E-value=7.4e+02 Score=26.21 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 042557 187 TYEAQIEDLRIVLKATNEKYESM 209 (545)
Q Consensus 187 ~~r~Eie~Lq~~L~~aE~k~~~~ 209 (545)
....++.+|+.....++..|...
T Consensus 275 ~~~~~~~~L~re~~~a~~~y~~~ 297 (362)
T TIGR01010 275 EQTADYQRLVLQNELAQQQLKAA 297 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555533
No 418
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=27.97 E-value=5e+02 Score=24.21 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042557 186 ETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 186 e~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
...+.+++.|-+.|-+-+.|..
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~ 101 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRK 101 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHH
Confidence 4567888888888877776633
No 419
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=27.79 E-value=5.2e+02 Score=24.29 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=9.5
Q ss_pred HHHHHHHHHhHHhHHHHHHH
Q 042557 200 KATNEKYESMLDDAKHEIGL 219 (545)
Q Consensus 200 ~~aE~k~~~~l~ea~~e~~~ 219 (545)
..|+.-+...+.+|+.++.+
T Consensus 85 ~~a~~~~~~~l~~A~~ea~~ 104 (164)
T PRK14473 85 ERARAQEAEIIAQARREAEK 104 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555554444
No 420
>PF14282 FlxA: FlxA-like protein
Probab=27.76 E-value=4.4e+02 Score=23.44 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 042557 56 ESEIAALKEKVGLLEMTIGRQKA 78 (545)
Q Consensus 56 esEI~~LqeKve~LE~ev~~le~ 78 (545)
...|..|+.++..|..++..|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667777777777776666665
No 421
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=27.72 E-value=4.7e+02 Score=27.93 Aligned_cols=30 Identities=17% Similarity=0.464 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 042557 198 VLKATNEKYESMLDDAKHEIGLLTNIIKEA 227 (545)
Q Consensus 198 ~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~ 227 (545)
.|...+.+|+--+.+-..+..+|...|.+|
T Consensus 58 LLe~v~~rYqR~y~ema~~L~~LeavLqRi 87 (324)
T PF12126_consen 58 LLEAVEARYQRDYEEMAGQLGRLEAVLQRI 87 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345556666655555555555555555443
No 422
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=27.71 E-value=5.3e+02 Score=24.36 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhHHHHH
Q 042557 120 NNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLL-------------SSQTEHE 186 (545)
Q Consensus 120 ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~-------------~~Q~Ele 186 (545)
.+...+..+|.....+++.+...+-.+.. ++-.-.++|..++..+.+++.+.. -.|..+.
T Consensus 8 rny~~a~aeL~~a~~~I~~~q~r~a~a~~-------~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr 80 (136)
T PF11570_consen 8 RNYEAARAELDQADEDIATLQERQASAEQ-------ALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVR 80 (136)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHH
Confidence 33445555666666666666555555433 344444555566666665554433 2456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 042557 187 TYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNII 224 (545)
Q Consensus 187 ~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~ 224 (545)
.+..+|..-+..|..|... |.++..+|.+.+-.+
T Consensus 81 ~a~~dv~nkq~~l~AA~~~----l~~~~~el~~~~~al 114 (136)
T PF11570_consen 81 RAQKDVQNKQNKLKAAQKE----LNAADEELNRIQAAL 114 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhhhhHHHHHHH
Confidence 7777888888888777766 334555555555444
No 423
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=27.67 E-value=9e+02 Score=27.07 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042557 142 ELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLK 200 (545)
Q Consensus 142 ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~ 200 (545)
.+..++.++....+++..+.+.+--+.++.+-++.++.....+|..++.|...+.-...
T Consensus 14 r~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 14 RLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455566677777888888888888888888888888888888887766553
No 424
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=27.66 E-value=1.8e+02 Score=25.38 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=24.2
Q ss_pred HHHHHHHhHHHhHHhhHHHHHHHHHHHHH
Q 042557 307 QARAESMKLKESFLDKETELQSVIQENEE 335 (545)
Q Consensus 307 ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~ 335 (545)
.+..+-..|+..+...|.+|+.+.+||--
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 33467788999999999999999999854
No 425
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=27.66 E-value=2.3e+02 Score=25.83 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=5.3
Q ss_pred hhhHHHHHHHH
Q 042557 4 SYARNLVEEWK 14 (545)
Q Consensus 4 ~RV~DLl~Evk 14 (545)
.++..|+.||=
T Consensus 24 ek~~klvDelV 34 (108)
T COG3937 24 EKVQKLVDELV 34 (108)
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 426
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=27.58 E-value=4.8e+02 Score=23.85 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHh
Q 042557 158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED-LRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKD 229 (545)
Q Consensus 158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~-Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~ 229 (545)
+.....|.+++....++...+..++..+..++.++.. +..+-..++.-+..++.+|+.++.++.......+.
T Consensus 29 ~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~ 101 (147)
T TIGR01144 29 KKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIE 101 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 427
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=27.51 E-value=2e+02 Score=23.77 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=27.0
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 36 ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQK 77 (545)
Q Consensus 36 lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le 77 (545)
+.+.+..+.+..+...+..++.++..++.+...|..++..+.
T Consensus 17 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 17 ISVVSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445566666666666666666666666666666666655544
No 428
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.38 E-value=1.6e+02 Score=29.84 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557 264 NRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRA 338 (545)
Q Consensus 264 ~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~ 338 (545)
+.+..++.+.+.++..++.+..+|+..|+.+. =.+.+++.|++|..++.+.|.++.
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-------------------~~~d~l~ie~~L~~v~~eIe~~~~ 183 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAK-------------------TVEDLLEIERELSRVRSEIEQLEG 183 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999998888885432 123466777777777777776654
No 429
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=27.18 E-value=6.3e+02 Score=25.06 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=10.1
Q ss_pred HHHHHHHHhHHhHHHHHHHHH
Q 042557 201 ATNEKYESMLDDAKHEIGLLT 221 (545)
Q Consensus 201 ~aE~k~~~~l~ea~~e~~~lk 221 (545)
.|+.-+...+.+|+.++.++.
T Consensus 126 eAe~~~e~i~~~A~~eae~ii 146 (205)
T PRK06231 126 EALQLKSELEKEANRQANLII 146 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555433
No 430
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=27.16 E-value=4.7e+02 Score=23.61 Aligned_cols=7 Identities=14% Similarity=0.207 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 042557 56 ESEIAAL 62 (545)
Q Consensus 56 esEI~~L 62 (545)
..++..|
T Consensus 11 raQ~~vL 17 (102)
T PF10205_consen 11 RAQNQVL 17 (102)
T ss_pred HHHHHHH
Confidence 3333333
No 431
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=27.12 E-value=5.5e+02 Score=24.43 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=9.7
Q ss_pred HHHHHHHHHhHHhHHHHHHHH
Q 042557 200 KATNEKYESMLDDAKHEIGLL 220 (545)
Q Consensus 200 ~~aE~k~~~~l~ea~~e~~~l 220 (545)
..|+.....++..|+.+|...
T Consensus 106 ~~A~~ea~~~~~~a~~~I~~e 126 (175)
T PRK14472 106 EKAHTEAKKMIASAKEEIEQE 126 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444554444443
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=27.08 E-value=9.9e+02 Score=27.33 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHH
Q 042557 297 EVIYMQETLGQARAESMKLKESFL 320 (545)
Q Consensus 297 e~~ea~e~~~ea~~e~~~Lk~~l~ 320 (545)
.+......+..+..+...+...+.
T Consensus 335 ~L~~~e~~l~~Le~e~~~l~~~l~ 358 (553)
T PRK10869 335 QLDDQEDDLETLALAVEKHHQQAL 358 (553)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 433
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.08 E-value=3.4e+02 Score=27.96 Aligned_cols=43 Identities=9% Similarity=0.201 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 61 ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVES 103 (545)
Q Consensus 61 ~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkeles 103 (545)
.|+.++..|..+|.+|...+++...++.++.+.-+.+-..|..
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555444444444443333333333
No 434
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=27.02 E-value=6.6e+02 Score=25.30 Aligned_cols=113 Identities=18% Similarity=0.327 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 042557 140 INELENSREEEEKSKKAMESLASALHEVSVEAR----EAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKH 215 (545)
Q Consensus 140 ~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~e----eakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~ 215 (545)
....+.++......+ +...+||..+.+-+. .+..++..+..+++..+.-+..+.-.+...|.--...+++=+.
T Consensus 27 vdrVe~Ardsq~eaq---eQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~ 103 (201)
T PF11172_consen 27 VDRVEDARDSQQEAQ---EQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQ 103 (201)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333 445555555444322 3444555555555555666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHH
Q 042557 216 EIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENS 257 (545)
Q Consensus 216 e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~ 257 (545)
|++.+.+. .++...+.-+..-+++=..+++.+++.+..+.
T Consensus 104 EL~~Y~~~--sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~ 143 (201)
T PF11172_consen 104 ELDQYSNA--SLRRASEQKLAETRRRYAQLIKAMRRAESKMQ 143 (201)
T ss_pred HHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666555 46666666677777766777777777776543
No 435
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.00 E-value=4.4e+02 Score=23.29 Aligned_cols=9 Identities=11% Similarity=-0.260 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 042557 99 KTVESLKFE 107 (545)
Q Consensus 99 kelesLkse 107 (545)
..++.+.+.
T Consensus 50 ~~vyk~VG~ 58 (110)
T TIGR02338 50 TPVYKSVGN 58 (110)
T ss_pred chhHHHhch
Confidence 344444443
No 436
>PRK04406 hypothetical protein; Provisional
Probab=26.81 E-value=3.8e+02 Score=22.61 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 042557 53 HDAESEIAALKEKVGLLEMTIGRQKADLDESER 85 (545)
Q Consensus 53 eeaesEI~~LqeKve~LE~ev~~le~~leE~k~ 85 (545)
.+++..++-+..-++.|...|..+...|+.+..
T Consensus 14 ~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ 46 (75)
T PRK04406 14 NDLECQLAFQEQTIEELNDALSQQQLLITKMQD 46 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444433333
No 437
>PRK14155 heat shock protein GrpE; Provisional
Probab=26.81 E-value=5.1e+02 Score=26.09 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 042557 158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLR 196 (545)
Q Consensus 158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq 196 (545)
+++...|..+..++.+.+.++.+++++++++|....+=+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~ 54 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREM 54 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667778888888889999999999999888777633
No 438
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=26.61 E-value=8.5e+02 Score=26.44 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 042557 48 NNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESER 85 (545)
Q Consensus 48 lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~ 85 (545)
++..|+.++..++.....+..++.++...++.+...+.
T Consensus 89 y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a 126 (352)
T COG1566 89 YRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEA 126 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444443
No 439
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=26.48 E-value=8.1e+02 Score=26.12 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=11.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042557 178 LLSSQTEHETYEAQIEDLRIVLKATN 203 (545)
Q Consensus 178 l~~~Q~Ele~~r~Eie~Lq~~L~~aE 203 (545)
+...+..+++...-+..++..|..+.
T Consensus 143 L~~~~~~l~q~~~k~~~~q~~l~~~~ 168 (301)
T PF06120_consen 143 LAVAQERLEQMQSKASETQATLNDLT 168 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444555554433
No 440
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=26.44 E-value=4.5e+02 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhHHhHHHHHHH
Q 042557 199 LKATNEKYESMLDDAKHEIGL 219 (545)
Q Consensus 199 L~~aE~k~~~~l~ea~~e~~~ 219 (545)
...++.-+...+.+|+.++..
T Consensus 75 ~~~a~~~~~~~~~ea~~~~~~ 95 (132)
T PF00430_consen 75 KEEAEKEKEEILAEAEKEAER 95 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444554444444
No 441
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=26.43 E-value=1e+02 Score=26.29 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHHHhHHhhHHHHHHHHHHHH
Q 042557 305 LGQARAESMKLKESFLDKETELQSVIQENE 334 (545)
Q Consensus 305 ~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene 334 (545)
+.++.-+|.+|+..+.+.|++||....++-
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~q 31 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQ 31 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346678899999999999999988777543
No 442
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=26.32 E-value=5.9e+02 Score=24.50 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 042557 191 QIEDLRIVLKATNEKYESMLDDAKHEIGLLTN 222 (545)
Q Consensus 191 Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk 222 (545)
++++.+.....+...|+..|.+|+.+...+..
T Consensus 52 ~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~ 83 (155)
T PRK06569 52 QADTLTIEVEKLNKYYNEEIDKTNTEIDRLKK 83 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555556556666665555543
No 443
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=26.20 E-value=1e+03 Score=27.28 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=13.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 042557 42 MRQLEGNNDKLHDAESEIAALKEKVGL 68 (545)
Q Consensus 42 t~eLE~lk~~LeeaesEI~~LqeKve~ 68 (545)
+..-+++.......+..|+.|....+.
T Consensus 301 tes~e~L~qqV~qs~EKIa~LEqEKEH 327 (518)
T PF10212_consen 301 TESREGLAQQVQQSQEKIAKLEQEKEH 327 (518)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554443
No 444
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.02 E-value=5.8e+02 Score=24.29 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=9.6
Q ss_pred HHHHHHHHhHHhHHHHHHHHH
Q 042557 201 ATNEKYESMLDDAKHEIGLLT 221 (545)
Q Consensus 201 ~aE~k~~~~l~ea~~e~~~lk 221 (545)
.|+.-+...+.+|+.++.++.
T Consensus 94 ea~~~~~~~~~~A~~ea~~~~ 114 (173)
T PRK13460 94 DALKLKNKLLEETNNEVKAQK 114 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445544444433
No 445
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=25.96 E-value=9.3e+02 Score=26.67 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 163 ALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 163 AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
.|.+++-+.+...+.+.+...|++..+.-++.+.-+.+.-|.++.
T Consensus 147 ~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~ 191 (464)
T KOG4637|consen 147 QLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCG 191 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344555555666666666666666666656556555555555554
No 446
>PRK14148 heat shock protein GrpE; Provisional
Probab=25.83 E-value=1.7e+02 Score=29.17 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557 157 MESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED 194 (545)
Q Consensus 157 ~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~ 194 (545)
.+.+...|..+..++.+.+.++.+++++++++|..+.+
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666544433
No 447
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=25.80 E-value=7.9e+02 Score=25.76 Aligned_cols=6 Identities=17% Similarity=0.069 Sum_probs=2.2
Q ss_pred HHHHHH
Q 042557 194 DLRIVL 199 (545)
Q Consensus 194 ~Lq~~L 199 (545)
.+++.|
T Consensus 194 ~~~a~l 199 (346)
T PRK10476 194 AREAAL 199 (346)
T ss_pred HHHHHH
Confidence 333333
No 448
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=25.58 E-value=1.1e+03 Score=27.43 Aligned_cols=124 Identities=21% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 39 DAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQA 118 (545)
Q Consensus 39 ~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el 118 (545)
..++..+..+..+|.....+++..-.-...|..++.....-+...+..+..++.++...|.++..-+.+...+-..+.++
T Consensus 417 ~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el 496 (607)
T KOG0240|consen 417 DILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEEL 496 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 119 LNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASAL 164 (545)
Q Consensus 119 ~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL 164 (545)
-.+......+...-.... +..+|...+.-.+..++.+-.+...|
T Consensus 497 ~~~~~~~~~~~~~~~~~n--~~sel~sl~~~~~~~~~r~~~~~~~l 540 (607)
T KOG0240|consen 497 AVNYDQKSEEKESKLSQN--LKSELQSLQEPSEHQSKRITELLSEL 540 (607)
T ss_pred HHhhhHHHHHHhhhhhhh--hHHHHHhhhhcccchhHHHHHHHHHH
No 449
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=25.55 E-value=3e+02 Score=28.73 Aligned_cols=83 Identities=25% Similarity=0.279 Sum_probs=60.5
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHH
Q 042557 247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETEL 326 (545)
Q Consensus 247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eL 326 (545)
...|++|++...+-..-+.++.-++.+|-+++.|-==|..|-..|.---+.+-.+=+.-.-++++..-+.+.+.++|..-
T Consensus 196 ~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Q 275 (311)
T PF04642_consen 196 ESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQ 275 (311)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHH
Confidence 46777888888888888888888888888888888888888888854444455555555556777777777777777665
Q ss_pred HHH
Q 042557 327 QSV 329 (545)
Q Consensus 327 q~i 329 (545)
+.+
T Consensus 276 a~~ 278 (311)
T PF04642_consen 276 AEM 278 (311)
T ss_pred HHH
Confidence 443
No 450
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=25.44 E-value=8.1e+02 Score=25.77 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 101 VESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENS 146 (545)
Q Consensus 101 lesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~ 146 (545)
+..+..++...+.++..+..+...+...++.+..+.-++...+..+
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444444444433333333333
No 451
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=25.42 E-value=5.1e+02 Score=23.40 Aligned_cols=61 Identities=31% Similarity=0.421 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 042557 297 EVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEA 357 (545)
Q Consensus 297 e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea 357 (545)
...+.+.++-+-.+-+..|++.|..+|+.|--+.+|+|.|-=+=..=-+.|.-|..=++..
T Consensus 13 Q~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 13 QNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777778889999999999999999999999997766666666677666666643
No 452
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=25.09 E-value=6.9e+02 Score=24.87 Aligned_cols=29 Identities=10% Similarity=0.034 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHhhhhhH
Q 042557 217 IGLLTNIIKEAKDESKISKAEWEQKELHL 245 (545)
Q Consensus 217 ~~~lkk~~E~~~~E~e~s~~~~~~kE~~~ 245 (545)
+...+..+...+..+..+...|...=..+
T Consensus 166 ~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~ 194 (236)
T cd07651 166 INSSRRDYQNAVKALRELNEIWNREWKAA 194 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444555555543333
No 453
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=24.96 E-value=7.1e+02 Score=24.92 Aligned_cols=69 Identities=26% Similarity=0.380 Sum_probs=49.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 46 EGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 46 E~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
.....-+.++.++.+....+.-.+...+...+....+....-++..+++.++++.+.+++-++...+.-
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556677777777777777777777777777777777777777778888887778887777776654
No 454
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=24.95 E-value=9e+02 Score=26.12 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 042557 252 SEEENSSLEKEINRLVNLLK 271 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~ 271 (545)
++.++...+..+......+.
T Consensus 156 S~~~ld~a~~~~~~a~a~l~ 175 (390)
T PRK15136 156 GREELQHARDAVASAQAQLD 175 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333333
No 455
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=24.88 E-value=1e+03 Score=26.69 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH--HhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042557 11 EEWKIRVEELEMQAEEAHKLKRSA--SESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHS 88 (545)
Q Consensus 11 ~Evkkql~sLE~QAeKA~ky~elk--~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~ 88 (545)
..|...+.++-.++...+.+---. +-.-.|...--..+...-+.+-..+..||+-|+.|.+.|.. .-+-=....|.
T Consensus 176 ~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~--RgVRp~~~qLe 253 (426)
T smart00806 176 TEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQ--RGVRPSKKQLE 253 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHH
Confidence 344444444544444443321000 12233333333334444455566666777777766665532 22222233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 89 MAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKA 156 (545)
Q Consensus 89 ~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka 156 (545)
.+.+++....++|..+..-|...+-.-. +-+..++....++-+.+...=+.+.+-.+-.+++
T Consensus 254 ~v~kdi~~a~keL~~m~~~i~~eKP~Wk------KiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka 315 (426)
T smart00806 254 TVQKELETARKELKKMEEYIDIEKPIWK------KIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKA 315 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444433322211111 5566777777776666666544443333333333
No 456
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=24.68 E-value=4.5e+02 Score=22.60 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 042557 91 KNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNL 132 (545)
Q Consensus 91 ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L 132 (545)
.+++-.+|..|..|...++.++.++..+...-.-|..=|++|
T Consensus 22 i~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 22 IQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555554444444555555544
No 457
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.61 E-value=2.7e+02 Score=22.45 Aligned_cols=10 Identities=20% Similarity=0.272 Sum_probs=3.6
Q ss_pred HHHHHHHhhh
Q 042557 70 EMTIGRQKAD 79 (545)
Q Consensus 70 E~ev~~le~~ 79 (545)
+..+.++...
T Consensus 6 En~~~~~~~~ 15 (55)
T PF05377_consen 6 ENELPRIESS 15 (55)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 458
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=24.39 E-value=2.5e+02 Score=29.81 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=23.8
Q ss_pred HHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 26 EAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQ 76 (545)
Q Consensus 26 KA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~l 76 (545)
.|.||+..+-.....++.++++ +......|+++...++++|..+
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~-------Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEG-------LEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888776655555544444 3334444444444444444433
No 459
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=24.38 E-value=1.1e+03 Score=26.84 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=25.8
Q ss_pred hhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557 242 ELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL 291 (545)
Q Consensus 242 E~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L 291 (545)
-..|...|+.+.+-...+..+-..|...|+- -...++.|+|. .|+..|
T Consensus 167 ~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg-d~K~rG~WGE~-qLerIL 214 (475)
T PRK10361 167 RHTLAHEIRNLQQLNAQMAQEAINLTRALKG-DNKTQGNWGEV-VLTRVL 214 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcCcchHHH-HHHHHH
Confidence 3455555666666555555555666665542 22445666663 345555
No 460
>PRK15396 murein lipoprotein; Provisional
Probab=24.28 E-value=4.5e+02 Score=22.53 Aligned_cols=43 Identities=7% Similarity=0.183 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557 157 MESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 157 ~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
++.|....+.+.....++......++..+..++.|+.+-...|
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444444444444444444
No 461
>PRK14161 heat shock protein GrpE; Provisional
Probab=24.13 E-value=6.9e+02 Score=24.49 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557 157 MESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED 194 (545)
Q Consensus 157 ~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~ 194 (545)
++.+...|..++.++.+.+.++.+++++++++|..+.+
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~k 58 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEK 58 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777788888889999999999988877665
No 462
>PRK14160 heat shock protein GrpE; Provisional
Probab=23.95 E-value=2.7e+02 Score=28.15 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557 150 EEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED 194 (545)
Q Consensus 150 eEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~ 194 (545)
....+..+..|...+..+..++.+.+.++.+++++++++|..+.+
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 463
>PRK14143 heat shock protein GrpE; Provisional
Probab=23.54 E-value=8.2e+02 Score=25.14 Aligned_cols=39 Identities=10% Similarity=0.247 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 042557 158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLR 196 (545)
Q Consensus 158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq 196 (545)
..|...|..+..++.+.+.++.+++++++++|....+=+
T Consensus 70 ~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~ 108 (238)
T PRK14143 70 AQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQ 108 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777788888888999899988888776633
No 464
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.77 E-value=3.5e+02 Score=23.57 Aligned_cols=62 Identities=23% Similarity=0.240 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 042557 126 ASSVQNLLEEKHKLINELENSREEEEKSKKAMESLAS-ALHEVSVEAREAKEKLLSSQTEHETYEAQI 192 (545)
Q Consensus 126 sseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~-AL~E~e~E~eeakekl~~~Q~Ele~~r~Ei 192 (545)
..+|.++.+.+..+...|+....++-... |.. +-..++.+...+...+.....+|..+|.+.
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~e-----Ls~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRE-----LSPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccC-----CChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 34566666666666666666644442221 221 334455677778888888888888887754
No 465
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.71 E-value=6.2e+02 Score=27.56 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHH
Q 042557 276 DACATKEEEAQLRDSL----KEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVE 348 (545)
Q Consensus 276 ~~~~~~~E~~~lr~~L----k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~ 348 (545)
++-++..-.+.||..+ ..+.++....+-+-++++.....|...+-.+|+++++|+...|-|..+.+-|+.+.+
T Consensus 208 rasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 208 RASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
No 466
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=22.67 E-value=1.2e+03 Score=26.63 Aligned_cols=16 Identities=25% Similarity=0.137 Sum_probs=9.3
Q ss_pred cccchhhhhccccCCC
Q 042557 377 DLLPKVVEFSEENGHA 392 (545)
Q Consensus 377 ~~~~~~~~~~~~n~~~ 392 (545)
|-.|.+|..|.-|...
T Consensus 241 ddtp~~v~ls~fdp~r 256 (514)
T TIGR03319 241 DDTPEAVILSGFDPVR 256 (514)
T ss_pred cCCCCeEEecCCchHH
Confidence 4456666666666443
No 467
>PRK15396 murein lipoprotein; Provisional
Probab=22.64 E-value=4.9e+02 Score=22.28 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 042557 63 KEKVGLLEMTIGRQKADLDESERKHSMAKNETSE 96 (545)
Q Consensus 63 qeKve~LE~ev~~le~~leE~k~eL~~~ekEl~s 96 (545)
..++..|...+..+..+.+.++......+.|...
T Consensus 31 ssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 31 SSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344443433333333333333
No 468
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=22.56 E-value=7.7e+02 Score=24.49 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=2.9
Q ss_pred HhHHHHHH
Q 042557 211 DDAKHEIG 218 (545)
Q Consensus 211 ~ea~~e~~ 218 (545)
.+|+.+|.
T Consensus 152 ~~Ae~~I~ 159 (204)
T PRK09174 152 KEAEARIA 159 (204)
T ss_pred HHHHHHHH
Confidence 33333333
No 469
>PHA01750 hypothetical protein
Probab=22.48 E-value=3.1e+02 Score=22.95 Aligned_cols=12 Identities=8% Similarity=0.376 Sum_probs=4.5
Q ss_pred HHHhhhhhhHHH
Q 042557 43 RQLEGNNDKLHD 54 (545)
Q Consensus 43 ~eLE~lk~~Lee 54 (545)
.+|..+...+++
T Consensus 42 ~ELdNL~~ei~~ 53 (75)
T PHA01750 42 SELDNLKTEIEE 53 (75)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 470
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=22.46 E-value=4.7e+02 Score=21.94 Aligned_cols=52 Identities=19% Similarity=0.413 Sum_probs=37.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q 042557 220 LTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLK 271 (545)
Q Consensus 220 lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~ 271 (545)
|-+.++.+...+.....+|.+.=.++..+.-.+..+...|...++.|..++.
T Consensus 8 Ll~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 8 LLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777788888887777776777777777777777766666655
No 471
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.45 E-value=3.6e+02 Score=27.54 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=8.9
Q ss_pred HHHHHHHHhHHHhHH
Q 042557 306 GQARAESMKLKESFL 320 (545)
Q Consensus 306 ~ea~~e~~~Lk~~l~ 320 (545)
..++.+|.+|+..|.
T Consensus 96 ~~l~~en~~L~~lL~ 110 (276)
T PRK13922 96 EQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHhc
Confidence 345666777766543
No 472
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.38 E-value=4.8e+02 Score=22.09 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042557 184 EHETYEAQIEDLRIVLKATN 203 (545)
Q Consensus 184 Ele~~r~Eie~Lq~~L~~aE 203 (545)
++..+......+...+.+.+
T Consensus 77 ~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 77 EIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 473
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=22.19 E-value=8.2e+02 Score=24.65 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Q 042557 253 EEENSSLEKEINRLVNLLKETEEDACA-TKEEEAQLRDSL 291 (545)
Q Consensus 253 eee~~~~~~e~~~l~e~l~~~E~~~~~-~~~E~~~lr~~L 291 (545)
+..+..++.+++.++..-.......+. +.+|.+.++..|
T Consensus 174 e~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l 213 (247)
T PF06705_consen 174 ESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNAL 213 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444444444 666666666666
No 474
>PRK10698 phage shock protein PspA; Provisional
Probab=22.13 E-value=8.1e+02 Score=24.60 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHhHHHHHHHHHHHHHHHHhHhHH
Q 042557 162 SALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESM-------LDDAKHEIGLLTNIIKEAKDESKI 233 (545)
Q Consensus 162 ~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~-------l~ea~~e~~~lkk~~E~~~~E~e~ 233 (545)
..+......+..++..+..++..+..++..-..|.+....|..+.++- -..|-...+++..+|+++.++++-
T Consensus 106 ~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 106 HEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhH
Confidence 333333333444444444444444444444444444444444443311 123334445566666666666554
No 475
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=22.02 E-value=6.6e+02 Score=23.52 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHhHHHHH
Q 042557 143 LENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED-----LRIVLKATNEKYESMLDDAKHEI 217 (545)
Q Consensus 143 LE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~-----Lq~~L~~aE~k~~~~l~ea~~e~ 217 (545)
...+..+.......+++-.....++..-..+.+.++...+.+.......+.. ....+..|+.....++..|+.++
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i 127 (156)
T CHL00118 48 LKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 042557 218 GLLTNII 224 (545)
Q Consensus 218 ~~lkk~~ 224 (545)
...+...
T Consensus 128 ~~ek~~a 134 (156)
T CHL00118 128 EAQKEKA 134 (156)
T ss_pred HHHHHHH
No 476
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=22.01 E-value=6.6e+02 Score=23.88 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 199 LKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDAC 278 (545)
Q Consensus 199 L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~ 278 (545)
|...=..+..++++-..+-..+..+++. -..++..+=-+++..|+.++.++..+..++.+|.+.-+..++++.
T Consensus 6 l~~~~~~l~~~~e~~~~d~e~~~dtLe~-------i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~ 78 (162)
T PF05565_consen 6 LTDEYLELLELLEEGDLDEEAIADTLES-------IEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRID 78 (162)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHH
Q 042557 279 ATKE 282 (545)
Q Consensus 279 ~~~~ 282 (545)
.+++
T Consensus 79 ~Lk~ 82 (162)
T PF05565_consen 79 RLKE 82 (162)
T ss_pred HHHH
No 477
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=21.93 E-value=6.4e+02 Score=23.36 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 042557 45 LEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKL 124 (545)
Q Consensus 45 LE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~ 124 (545)
|+++..-+.-=...+..+...+..+...+..+...--.....+..+.+.-..++..+..+-..++.+...---+..-|..
T Consensus 32 F~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~ 111 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEE 111 (141)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 042557 125 AASSVQNLLEEKHK 138 (545)
Q Consensus 125 lsseIe~L~eel~k 138 (545)
+...+..+..+++.
T Consensus 112 L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 112 LRKRLEALEAQLNA 125 (141)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHcC
No 478
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=21.68 E-value=6.3e+02 Score=23.13 Aligned_cols=67 Identities=27% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHhHHhhHHHHHHHHhhhhhhHHHHH--HHHHHHHHHHHHHHHHHH
Q 042557 8 NLVEEWKIRVEELEMQAEE----------AHKLKRSASESLDAVMRQLEGNNDKLHDAE--SEIAALKEKVGLLEMTIG 74 (545)
Q Consensus 8 DLl~Evkkql~sLE~QAeK----------A~ky~elk~lSL~l~t~eLE~lk~~Leeae--sEI~~LqeKve~LE~ev~ 74 (545)
++--+-++.+..|+.+++. +.+|+..+.+.-.-++..+..+.-.|..+. ..++.++.++..++..+.
T Consensus 21 ~vR~~~Er~L~~L~~~l~~~~~~~~~kk~~~kYh~VRFfERkKa~R~lkql~k~l~~~~~~~~~~~l~~~l~~~~~DL~ 99 (114)
T PF10153_consen 21 DVRVEKERELEALKRELEEAERKEKEKKMAKKYHMVRFFERKKATRKLKQLEKKLEEAEDKKEIKELEKELHKLEVDLN 99 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
No 479
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=21.66 E-value=8.4e+02 Score=24.58 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHH
Q 042557 216 EIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKE-EEAQLRDSLKEV 294 (545)
Q Consensus 216 e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~-E~~~lr~~Lk~a 294 (545)
+|...+++|+.-+..+..+++-|...-..- ..+++++..++..++ ++.-++.+..+.+.+ +.+.++.-..=+
T Consensus 115 ~i~k~RKkLe~rRLdyD~~ksk~~kak~~~----~~~eeElr~Ae~kfe---es~E~a~~~M~~i~~~e~e~~~~L~~lv 187 (215)
T cd07593 115 EYHSARKKLESRRLAYDAALTKSQKAKKED----SRLEEELRRAKAKYE---ESSEDVEARMVAIKESEADQYRDLTDLL 187 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc----hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcChHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 042557 295 EAEVIYMQETLGQARAESMKL 315 (545)
Q Consensus 295 e~e~~ea~e~~~ea~~e~~~L 315 (545)
++++.+.+.+.+.+..=...|
T Consensus 188 ~AQl~Yh~q~~e~L~~l~~~~ 208 (215)
T cd07593 188 DAELDYHQQSLDVLREVRQSW 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
No 480
>PRK14140 heat shock protein GrpE; Provisional
Probab=21.57 E-value=8.1e+02 Score=24.35 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Q 042557 141 NELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED------------LRIVLKATNEKYES 208 (545)
Q Consensus 141 ~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~------------Lq~~L~~aE~k~~~ 208 (545)
.+.....-..+..-..++++...+..+..++.+.+.++.+++++++++|....+ +-..|-..=..+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLer 102 (191)
T PRK14140 23 DEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFER 102 (191)
T ss_pred cchhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHH--hHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 042557 209 MLD--DAKHEIGLLTNIIKEAKDESKISKAEWE 239 (545)
Q Consensus 209 ~l~--ea~~e~~~lkk~~E~~~~E~e~s~~~~~ 239 (545)
++. ........+..-++-+...+...+..|+
T Consensus 103 Al~~~~~~~~~~~i~~Gv~mi~k~l~~~L~k~G 135 (191)
T PRK14140 103 ALQIEADDEQTKSLLKGVEMVHRQLLEALKKEG 135 (191)
T ss_pred HHhccCccchHHHHHHHHHHHHHHHHHHHHHCC
No 481
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.53 E-value=1.1e+03 Score=25.82 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 83 SERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLE---EKHKLINELENSREEEEKSKKAMES 159 (545)
Q Consensus 83 ~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~e---el~kl~~ELE~~~~eeEkekka~Ee 159 (545)
+.+-|...-+.+-....=+..+...++.-..+..++.-...++..++....+ +...-.+-|+.+......+. .-
T Consensus 69 a~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn---~~ 145 (401)
T PF06785_consen 69 AGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREEN---QC 145 (401)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH---HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHH-HH
Q 042557 160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKA-EW 238 (545)
Q Consensus 160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~-~~ 238 (545)
|...|..+..+..+..++...+-.|+.....-...|..--.++=.--..||+--...|..|..+|.-+.-|+..-+- +.
T Consensus 146 lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 146 LQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred HHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred Hhhh
Q 042557 239 EQKE 242 (545)
Q Consensus 239 ~~kE 242 (545)
+.+|
T Consensus 226 ~~~e 229 (401)
T PF06785_consen 226 DMKE 229 (401)
T ss_pred hhhh
No 482
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.48 E-value=4.1e+02 Score=21.41 Aligned_cols=66 Identities=26% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 54 DAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQAL 119 (545)
Q Consensus 54 eaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ 119 (545)
+...++..|+.++..++..+..+...+..-.-.--+=..-...-+..+..+...+..+...+..+.
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 483
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=21.46 E-value=8.7e+02 Score=24.70 Aligned_cols=218 Identities=10% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----HHHH
Q 042557 29 KLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAK-----TVES 103 (545)
Q Consensus 29 ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqk-----eles 103 (545)
+.....+..+...+.-+...-.-+.+....|..|..++..+.+.+..+-..=.++-.-+...-.-+..|.. -+-.
T Consensus 1 ~~~~~~~~~~~~~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~ 80 (234)
T cd07664 1 RMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSR 80 (234)
T ss_pred ChhhHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHH
Q ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557 104 LKFELETVKEEKAQALNNE-KLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQ 182 (545)
Q Consensus 104 LkseLe~~eeel~el~ekE-k~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q 182 (545)
.-+.+..+...+..+..+. ..-...++....+.-++...+..+-.+.-++=..+......|.-......-... ....
T Consensus 81 ~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~--~~k~ 158 (234)
T cd07664 81 ALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQY--ANKP 158 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH-HHHHHHHHhHhHHHHHHHHhhhhhHHHh
Q 042557 183 TEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLL-TNIIKEAKDESKISKAEWEQKELHLVDC 248 (545)
Q Consensus 183 ~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~l-kk~~E~~~~E~e~s~~~~~~kE~~~~~~ 248 (545)
..+.+++.++..++.....|...|..+-.-.+.|+.|. +.++.-.++-++..+...-.....++++
T Consensus 159 dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~ 225 (234)
T cd07664 159 DKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKY 225 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=21.41 E-value=6.8e+02 Score=23.45 Aligned_cols=63 Identities=10% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042557 59 IAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNN 121 (545)
Q Consensus 59 I~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ek 121 (545)
+..+-.....+++.+......++.++.++...+..+......|.+|+..+.....+......+
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 485
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.40 E-value=4.8e+02 Score=26.42 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 53 HDAESEIAALKEKVGLLEMTIGRQKADLDES--ERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 53 eeaesEI~~LqeKve~LE~ev~~le~~leE~--k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
++...+...++.+++.++.+..++..-+... -..+..+++++...+.+|+.+..++..+.+.
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 486
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.25 E-value=1.3e+03 Score=26.77 Aligned_cols=315 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHH--hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 6 ARNLVEEWKIRVEELEMQAEEAH--------KLKRSAS--ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGR 75 (545)
Q Consensus 6 V~DLl~Evkkql~sLE~QAeKA~--------ky~elk~--lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~ 75 (545)
..+.|.+-.-..+-|+.....+. +|-++-- ..+.+....+......++...-.+.+=+..|..|.-.+-+
T Consensus 203 l~~ELR~qr~rnq~Le~~ssS~~g~~~~~~~~~ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~ 282 (654)
T KOG4809|consen 203 LSAELRNQRARNQPLEINSSSAKGLGYTCLGRLAELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQR 282 (654)
T ss_pred HHHHHHHHHhhcchhhhhhhcccCCCchHHHHHHHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 042557 76 QKADLDESERKHSMA-------------------------KNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQ 130 (545)
Q Consensus 76 le~~leE~k~eL~~~-------------------------ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe 130 (545)
..---....+.|..+ ...-+.++.+|++++.+...+.+.++.+....+...+.+-
T Consensus 283 kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~ 362 (654)
T KOG4809|consen 283 KGMGRSNQPRDFTKANLSAHEMAHMRMKVERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLI 362 (654)
T ss_pred hhcccccchhhHHHHHHhHHHHHhhhchHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042557 131 NLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESML 210 (545)
Q Consensus 131 ~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l 210 (545)
++.+....|..-....-.++....=+++.-....-.++..+..++.....+ ..-.++..+.--|.-+-..|+-.+
T Consensus 363 dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dda-----r~~pe~~d~i~~le~e~~~y~de~ 437 (654)
T KOG4809|consen 363 DLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDA-----RMNPEFADQIKQLEKEASYYRDEC 437 (654)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-----hcChhhHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 042557 211 DDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDS 290 (545)
Q Consensus 211 ~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~ 290 (545)
--|..+.+++-..+-. +...-|.+---+-..-+-.-.+.++.+.-+..-...+..+=+.+-.++.+.+-+.+.
T Consensus 438 ~kaqaevdrlLeilke-------veneKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~ 510 (654)
T KOG4809|consen 438 GKAQAEVDRLLEILKE-------VENEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADN 510 (654)
T ss_pred HHHHHHHHHHHHHHHH-------HHhhhccccchhhhcCchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q ss_pred HHH--HHHHHHHHHHHHHHH---HHHHHhHHHhHHhhHHHHHHHHHH
Q 042557 291 LKE--VEAEVIYMQETLGQA---RAESMKLKESFLDKETELQSVIQE 332 (545)
Q Consensus 291 Lk~--ae~e~~ea~e~~~ea---~~e~~~Lk~~l~dkE~eLq~i~~E 332 (545)
-++ ++..++....+-+++ .+-.+....++.++|+-|.++.++
T Consensus 511 sqhlq~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~e 557 (654)
T KOG4809|consen 511 SQHLQIEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIE 557 (654)
T ss_pred HHHHHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 487
>PRK00295 hypothetical protein; Provisional
Probab=21.25 E-value=4.7e+02 Score=21.52 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 042557 48 NNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMA 98 (545)
Q Consensus 48 lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slq 98 (545)
+...+.+++..++-+.+-+..|...|.++...|+.+...+..+...+..+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 488
>PRK14151 heat shock protein GrpE; Provisional
Probab=21.22 E-value=2.2e+02 Score=27.89 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557 156 AMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED 194 (545)
Q Consensus 156 a~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~ 194 (545)
+...+...+..+..++.+.+.++.+++++++++|....+
T Consensus 21 ~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~k 59 (176)
T PRK14151 21 AGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQ 59 (176)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=21.19 E-value=5.1e+02 Score=21.89 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 87 HSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENS 146 (545)
Q Consensus 87 L~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~ 146 (545)
|...+.|--.+--+.+.|+..+..++.++..++=....+---|..+..+.+.+...|..+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
No 490
>PF15294 Leu_zip: Leucine zipper
Probab=21.17 E-value=9.9e+02 Score=25.24 Aligned_cols=209 Identities=18% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-
Q 042557 62 LKEKVGLLEMTIGR-QKADLDESERKHSMAKNETSEMAKTVES-----LKFELETVKEEKAQALNNEKLAASSVQNLLE- 134 (545)
Q Consensus 62 LqeKve~LE~ev~~-le~~leE~k~eL~~~ekEl~slqkeles-----LkseLe~~eeel~el~ekEk~lsseIe~L~e- 134 (545)
...++...+..+.. -...|-+..-....+..-+.+++.-|.. |.+......--++++...-..+.-.+.-...
T Consensus 6 r~~~Lk~Vds~F~Dlk~srL~e~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~dise 85 (278)
T PF15294_consen 6 REQHLKEVDSCFQDLKSSRLREDTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTDISE 85 (278)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhcccHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH-------------HHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 042557 135 -EKHKLINELENSREEEEKSKK-------------AMES-----LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDL 195 (545)
Q Consensus 135 -el~kl~~ELE~~~~eeEkekk-------------a~Ee-----La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~L 195 (545)
+-..+...+.......-.... .++. |...+..+..+-..++.++...+.....+-.+-..|
T Consensus 86 lEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl 165 (278)
T PF15294_consen 86 LENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL 165 (278)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH-----HHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHH
Q 042557 196 RIVLKATNE-----KYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLL 270 (545)
Q Consensus 196 q~~L~~aE~-----k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l 270 (545)
+..|++... +.+..+---..++.-|-.++..+.++++.+....+..-.. +++.+.++..++-++.+.|
T Consensus 166 ~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~-------L~e~L~~~KhelL~~QeqL 238 (278)
T PF15294_consen 166 EAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKA-------LEETLQSCKHELLRVQEQL 238 (278)
T ss_pred HHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcchhh
Q ss_pred HHHHHHH
Q 042557 271 KETEEDA 277 (545)
Q Consensus 271 ~~~E~~~ 277 (545)
..++.++
T Consensus 239 ~~aekeL 245 (278)
T PF15294_consen 239 SLAEKEL 245 (278)
T ss_pred hcchhhH
No 491
>PRK00736 hypothetical protein; Provisional
Probab=21.11 E-value=4.7e+02 Score=21.51 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 042557 40 AVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAK 91 (545)
Q Consensus 40 l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~e 91 (545)
+...+|..+-+.+......|..|.+-+......|..+...+.-+...+...+
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 492
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=20.99 E-value=7.3e+02 Score=23.61 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 042557 129 VQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED-LRIVLKATNEKYE 207 (545)
Q Consensus 129 Ie~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~-Lq~~L~~aE~k~~ 207 (545)
..-+.++...+...|+.+......+.....+....|.++..++.++.. .++.++.. ....+..|.....
T Consensus 42 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~----------~A~~ea~~~~~~~~~~A~~ea~ 111 (173)
T PRK13460 42 LKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVA----------EAKSDALKLKNKLLEETNNEVK 111 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHhHHHHHHHHHHHH
Q 042557 208 SMLDDAKHEIGLLTNII 224 (545)
Q Consensus 208 ~~l~ea~~e~~~lkk~~ 224 (545)
-++..|+.+|...+..+
T Consensus 112 ~~~~~a~~~ie~e~~~a 128 (173)
T PRK13460 112 AQKDQAVKEIELAKGKA 128 (173)
T ss_pred HHHHHHHHHHHHHHHHH
No 493
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=20.96 E-value=6.4e+02 Score=28.20 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042557 42 MRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNN 121 (545)
Q Consensus 42 t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ek 121 (545)
+..++..+.-|-.++.-|..|+++-......|-.|+.++.-+..-|.--.+|...+.-....|+.-.+.+..-...+.-+
T Consensus 110 ~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiK 189 (558)
T PF15358_consen 110 TELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIK 189 (558)
T ss_pred HHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042557 122 EKLAASSVQNLLEEKHKLINELE 144 (545)
Q Consensus 122 Ek~lsseIe~L~eel~kl~~ELE 144 (545)
-.-+..--.-|.+++.-+...|.
T Consensus 190 tnvLkqnS~~LEekLr~lq~qLq 212 (558)
T PF15358_consen 190 TNVLKQNSALLEEKLRYLQQQLQ 212 (558)
T ss_pred hcccccchHHHHHHHHHHHHHhc
No 494
>COG5283 Phage-related tail protein [Function unknown]
Probab=20.89 E-value=1.8e+03 Score=28.11 Aligned_cols=265 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSAS-------ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQ 76 (545)
Q Consensus 4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~-------lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~l 76 (545)
+-|.|.-..|+ .||.|++.+...---.. ..+..++.-|+.++..+.+.+.-+....+....+..++...
T Consensus 29 ssi~~~~~~~k----~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqa 104 (1213)
T COG5283 29 SSIKDSTQFWK----MLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQA 104 (1213)
T ss_pred HHHHhHHHHHH----HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 042557 77 KADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLI----NELENSREEEEK 152 (545)
Q Consensus 77 e~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~----~ELE~~~~eeEk 152 (545)
+..+..+...+......+.-.++.+..+...|.++..-+....+-.......++........+. .-.+.++.+.+.
T Consensus 105 e~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~esf~~q~~aln~q~~~ 184 (1213)
T COG5283 105 ENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRESFGRQTEALNKQLER 184 (1213)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHhHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhHHhHHHHHHHHHH
Q 042557 153 SKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLK----------ATNEKYESMLDDAKHEIGLLTN 222 (545)
Q Consensus 153 ekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~----------~aE~k~~~~l~ea~~e~~~lkk 222 (545)
-++.-.-|...|.+....+.++..-.. ..|...+.++..-..-+- -+-.-....|--+...|....+
T Consensus 185 t~k~~~~~~~~l~e~qq~~~q~~~a~~---~~L~~s~~q~~~s~~qlsk~~e~~~~~aG~~~~~~a~~~~s~a~i~aAv~ 261 (1213)
T COG5283 185 TKKVADALTYVLDEAQQKLSQALSARL---ERLQESRTQMSQSSGQLGKRLETDKAGAGALGLLGAALAGSFAAIGAAVR 261 (1213)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHhhhcchhHHHHHHH
Q ss_pred HHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 042557 223 IIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQ 286 (545)
Q Consensus 223 ~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~ 286 (545)
...++-.++- +-.+.++...+-+..+..++.++...+..+-+.....-.++..
T Consensus 262 ~~~~mn~~l~-----------~~~kq~k~~rdn~~k~t~q~~~m~~a~~~ta~~~kd~~~~lsk 314 (1213)
T COG5283 262 RTAQMNGELM-----------DKTKQVKGARDNLGKVTSQGEEMSDAIQETAEHIKDSGRELSK 314 (1213)
T ss_pred HHHHHhhhhh-----------hhHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHcchhhhhHHH
No 495
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=20.86 E-value=7e+02 Score=23.38 Aligned_cols=86 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 042557 129 VQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED-LRIVLKATNEKYE 207 (545)
Q Consensus 129 Ie~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~-Lq~~L~~aE~k~~ 207 (545)
..-+.++-..+...|+.+......+.....+....|.++..++..+.. .++.++.. ....+..|.....
T Consensus 34 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~----------~A~~~a~~~~~~~l~~A~~ea~ 103 (164)
T PRK14473 34 LNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVA----------QAQERARAQEAEIIAQARREAE 103 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHhHHHHHHHHHHHH
Q 042557 208 SMLDDAKHEIGLLTNII 224 (545)
Q Consensus 208 ~~l~ea~~e~~~lkk~~ 224 (545)
-++..|..+|...+...
T Consensus 104 ~~~~~a~~~I~~ek~~a 120 (164)
T PRK14473 104 KIKEEARAQAEQERQRM 120 (164)
T ss_pred HHHHHHHHHHHHHHHHH
No 496
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=20.86 E-value=8.2e+02 Score=24.15 Aligned_cols=203 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhH
Q 042557 45 LEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMA--KTVESLKFELETVKEEKAQALNNE 122 (545)
Q Consensus 45 LE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slq--kelesLkseLe~~eeel~el~ekE 122 (545)
|...+.-+..+...+..+...+..+.+ -..++-.....|...=..+.... ..+...-+.+..+...+..+..+.
T Consensus 6 F~~~k~~i~~Le~~Lk~l~~~~~~l~~----~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~ 81 (216)
T cd07627 6 FIEKKQYLDSLESQLKQLYKSLELVSS----QRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQ 81 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042557 123 -KLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKA 201 (545)
Q Consensus 123 -k~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~ 201 (545)
..-.-.++......-++...+..+-.+..+.-..++.+...|......+.-+...-......+..+..++..+..+...
T Consensus 82 a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~ 161 (216)
T cd07627 82 ALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASE 161 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 042557 202 TNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATK 281 (545)
Q Consensus 202 aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~ 281 (545)
|..+|..+=..++.|+.+.. .+.+..++.-+....+++.....++..+|
T Consensus 162 a~~~~e~is~~~k~El~rF~-------------------------------~~r~~dfk~~l~~~~e~~ie~~k~~ie~W 210 (216)
T cd07627 162 LKKEFEEVSELIKSELERFE-------------------------------RERVEDFRNSVEIYLESAIESQKELIELW 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 042557 282 E 282 (545)
Q Consensus 282 ~ 282 (545)
+
T Consensus 211 e 211 (216)
T cd07627 211 E 211 (216)
T ss_pred H
No 497
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=20.76 E-value=5.7e+02 Score=22.34 Aligned_cols=65 Identities=32% Similarity=0.444 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 199 LKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDAC 278 (545)
Q Consensus 199 L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~ 278 (545)
+......+. .||.+|+..|++ +-. |+++--|+.+++.++-++...+-.-|++
T Consensus 22 ~~~e~~~L~-------eEI~~Lr~qve~---------------nPe----vtr~A~EN~rL~ee~rrl~~f~~~gerE-- 73 (86)
T PF12711_consen 22 LEEENEALK-------EEIQLLREQVEH---------------NPE----VTRFAMENIRLREELRRLQSFYVEGERE-- 73 (86)
T ss_pred hHHHHHHHH-------HHHHHHHHHHHh---------------CHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHH--
Q ss_pred hhHHHHHHHHHHH
Q 042557 279 ATKEEEAQLRDSL 291 (545)
Q Consensus 279 ~~~~E~~~lr~~L 291 (545)
.+-.+.+.|++.+
T Consensus 74 ~l~~eis~L~~~l 86 (86)
T PF12711_consen 74 MLLQEISELRDQL 86 (86)
T ss_pred HHHHHHHHHHhhC
No 498
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=20.42 E-value=5.6e+02 Score=22.06 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 56 ESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFE 107 (545)
Q Consensus 56 esEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkse 107 (545)
...-+.|..++..|+..+..+-.+++..+.+...+..+-.-|+..|..|...
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 499
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=20.21 E-value=6.7e+02 Score=22.88 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHhHHHHH
Q 042557 143 LENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED-----LRIVLKATNEKYESMLDDAKHEI 217 (545)
Q Consensus 143 LE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~-----Lq~~L~~aE~k~~~~l~ea~~e~ 217 (545)
...+..+.....+.+++......++.....+....+...+.+......++.. ....+..|+.....++..|+.++
T Consensus 21 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i 100 (147)
T TIGR01144 21 AKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEI 100 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 042557 218 GLLTNII 224 (545)
Q Consensus 218 ~~lkk~~ 224 (545)
...+...
T Consensus 101 ~~e~~~a 107 (147)
T TIGR01144 101 EAEKEQA 107 (147)
T ss_pred HHHHHHH
No 500
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=20.20 E-value=1e+03 Score=25.02 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHH
Q 042557 60 AALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE--KLAASSVQNLLEEKH 137 (545)
Q Consensus 60 ~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE--k~lsseIe~L~eel~ 137 (545)
..|++-+..|+.-+...+.+.+.++..+...++.+...+.-+.+|......+.+.....-... ..+...+..+..-..
T Consensus 92 eelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K~~~~k~~~e 171 (268)
T PF11802_consen 92 EELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSESRVFQELKTKIEKIKEYKE 171 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 042557 138 KLINELENSREE 149 (545)
Q Consensus 138 kl~~ELE~~~~e 149 (545)
.+..-|......
T Consensus 172 ~Ll~~LgeFLee 183 (268)
T PF11802_consen 172 KLLSFLGEFLEE 183 (268)
T ss_pred HHHHHHHHHHHh
Done!