Query 042557
Match_columns 545
No_of_seqs 134 out of 143
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.3 2E-07 7E-12 88.9 43.0 104 43-146 13-116 (284)
2 1i84_S Smooth muscle myosin he 98.8 1.6E-08 5.6E-13 119.9 11.8 56 282-337 1081-1136(1184)
3 1i84_S Smooth muscle myosin he 98.7 6.4E-08 2.2E-12 114.8 11.9 38 252-289 1065-1102(1184)
4 3na7_A HP0958; flagellar bioge 97.8 0.0049 1.7E-07 61.2 23.6 60 135-194 91-150 (256)
5 3na7_A HP0958; flagellar bioge 97.4 0.039 1.3E-06 54.6 23.3 54 123-176 93-146 (256)
6 2v71_A Nuclear distribution pr 97.4 0.038 1.3E-06 52.9 22.0 141 6-150 8-153 (189)
7 3o0z_A RHO-associated protein 97.3 0.047 1.6E-06 51.2 20.8 109 14-122 5-113 (168)
8 2v71_A Nuclear distribution pr 97.2 0.12 4.3E-06 49.3 23.0 142 175-323 16-157 (189)
9 3o0z_A RHO-associated protein 96.7 0.33 1.1E-05 45.5 21.3 126 38-170 8-133 (168)
10 3vkg_A Dynein heavy chain, cyt 96.6 1.4 4.8E-05 57.4 32.1 54 279-332 2053-2106(3245)
11 3u1c_A Tropomyosin alpha-1 cha 96.2 0.13 4.6E-06 44.2 14.0 97 10-113 4-100 (101)
12 2efr_A General control protein 96.0 0.95 3.3E-05 41.9 23.0 97 111-207 26-122 (155)
13 3vkg_A Dynein heavy chain, cyt 95.8 5.4 0.00018 52.2 31.6 52 148-199 1934-1985(3245)
14 3u59_A Tropomyosin beta chain; 95.6 0.29 9.8E-06 42.0 13.5 95 11-112 5-99 (101)
15 2dfs_A Myosin-5A; myosin-V, in 95.1 0.71 2.4E-05 54.6 19.3 21 176-196 1023-1043(1080)
16 2efr_A General control protein 95.1 2 7E-05 39.7 24.7 133 72-222 22-154 (155)
17 3u1c_A Tropomyosin alpha-1 cha 95.0 0.79 2.7E-05 39.3 14.4 92 217-319 4-95 (101)
18 2v66_B Nuclear distribution pr 94.8 1.5 5E-05 38.6 15.7 90 57-146 3-96 (111)
19 3u59_A Tropomyosin beta chain; 94.5 1.5 5E-05 37.5 14.8 92 217-319 4-95 (101)
20 2ocy_A RAB guanine nucleotide 94.0 3.8 0.00013 37.9 21.0 87 252-338 56-143 (154)
21 2eqb_B RAB guanine nucleotide 93.8 1.7 5.7E-05 37.3 13.5 72 252-323 24-96 (97)
22 2dfs_A Myosin-5A; myosin-V, in 93.8 2.3 7.8E-05 50.3 19.4 15 253-267 1062-1076(1080)
23 3oja_B Anopheles plasmodium-re 92.4 1.4 4.8E-05 47.6 14.0 65 135-199 517-581 (597)
24 3mq7_A Bone marrow stromal ant 91.8 2.8 9.5E-05 37.0 12.3 78 259-339 30-107 (121)
25 3tnu_B Keratin, type II cytosk 91.6 1.8 6E-05 38.5 11.3 75 160-234 27-101 (129)
26 2fxo_A Myosin heavy chain, car 91.5 7.1 0.00024 34.6 19.3 8 162-169 83-90 (129)
27 2e7s_A RAB guanine nucleotide 90.7 1.5 5.2E-05 39.7 9.9 87 252-338 44-131 (135)
28 3ol1_A Vimentin; structural ge 90.6 6.3 0.00021 34.6 13.7 88 252-339 18-105 (119)
29 2ocy_A RAB guanine nucleotide 90.4 11 0.00037 34.8 18.2 51 151-207 82-132 (154)
30 1ic2_A Tropomyosin alpha chain 90.0 4.5 0.00015 33.1 11.5 54 61-114 3-56 (81)
31 3tnu_A Keratin, type I cytoske 89.6 5.4 0.00019 35.4 12.6 76 160-235 29-104 (131)
32 3hnw_A Uncharacterized protein 89.3 3.4 0.00012 37.4 11.2 106 3-114 27-132 (138)
33 3s4r_A Vimentin; alpha-helix, 89.3 6.6 0.00022 33.2 12.3 64 49-114 8-71 (93)
34 3hnw_A Uncharacterized protein 88.1 4.8 0.00016 36.4 11.3 71 76-146 66-136 (138)
35 2v66_B Nuclear distribution pr 87.2 15 0.0005 32.2 15.9 70 247-323 35-104 (111)
36 2eqb_B RAB guanine nucleotide 86.3 15 0.00051 31.4 13.1 41 159-199 23-63 (97)
37 3mq7_A Bone marrow stromal ant 86.1 17 0.00059 32.0 13.8 71 11-84 21-91 (121)
38 3tnu_B Keratin, type II cytosk 85.7 18 0.0006 31.9 13.5 68 46-116 32-99 (129)
39 1ic2_A Tropomyosin alpha chain 85.6 12 0.00042 30.4 11.5 68 133-207 5-72 (81)
40 2b9c_A Striated-muscle alpha t 85.1 16 0.00053 33.4 13.1 61 134-194 52-112 (147)
41 3swk_A Vimentin; cytoskeleton, 83.3 14 0.0005 30.6 11.1 82 257-338 3-84 (86)
42 3ghg_A Fibrinogen alpha chain; 83.3 12 0.00043 40.6 13.2 37 80-116 119-155 (562)
43 4h22_A Leucine-rich repeat fli 83.1 13 0.00045 32.1 10.9 72 45-116 4-75 (103)
44 3tnu_A Keratin, type I cytoske 81.7 14 0.00047 32.8 11.1 18 159-176 81-98 (131)
45 3a7p_A Autophagy protein 16; c 81.7 20 0.00068 33.0 12.2 55 281-335 74-128 (152)
46 3q8t_A Beclin-1; autophagy, AT 81.0 24 0.00083 29.8 14.3 70 47-116 8-77 (96)
47 3i00_A HIP-I, huntingtin-inter 80.8 8.2 0.00028 34.2 9.1 46 215-267 15-60 (120)
48 3ol1_A Vimentin; structural ge 80.8 28 0.00097 30.4 15.2 39 169-207 20-58 (119)
49 2jee_A YIIU; FTSZ, septum, coi 79.9 21 0.00072 29.6 10.6 49 62-110 11-59 (81)
50 2e7s_A RAB guanine nucleotide 79.7 6.9 0.00023 35.4 8.3 32 168-199 52-83 (135)
51 3swk_A Vimentin; cytoskeleton, 78.5 18 0.00062 30.0 10.0 36 172-207 3-38 (86)
52 3a7p_A Autophagy protein 16; c 77.6 24 0.00081 32.5 11.3 68 248-322 69-136 (152)
53 1x79_B RAB GTPase binding effe 77.4 34 0.0012 30.0 11.8 55 284-338 47-105 (112)
54 3oja_A Leucine-rich immune mol 77.1 35 0.0012 35.8 14.4 14 19-32 371-384 (487)
55 2oto_A M protein; helical coil 76.6 43 0.0015 30.2 18.5 88 271-358 53-141 (155)
56 3ghg_A Fibrinogen alpha chain; 75.9 39 0.0014 36.8 14.2 8 527-534 516-523 (562)
57 3i00_A HIP-I, huntingtin-inter 75.9 27 0.00093 30.8 11.0 38 158-195 43-80 (120)
58 3q8t_A Beclin-1; autophagy, AT 75.1 37 0.0013 28.7 14.5 32 157-188 62-93 (96)
59 4h22_A Leucine-rich repeat fli 74.3 39 0.0013 29.2 11.1 70 116-185 5-74 (103)
60 3oja_A Leucine-rich immune mol 73.4 91 0.0031 32.6 16.4 73 247-319 414-486 (487)
61 3qh9_A Liprin-beta-2; coiled-c 73.2 28 0.00097 28.8 9.5 63 45-107 14-76 (81)
62 4gkw_A Spindle assembly abnorm 72.7 55 0.0019 29.5 19.8 42 158-199 115-156 (167)
63 2b9c_A Striated-muscle alpha t 70.1 64 0.0022 29.3 16.3 43 63-105 2-44 (147)
64 1gk4_A Vimentin; intermediate 68.7 30 0.001 28.4 9.0 51 184-234 2-52 (84)
65 2b5u_A Colicin E3; high resolu 68.4 1.4E+02 0.0047 32.4 21.9 32 236-271 388-419 (551)
66 2jee_A YIIU; FTSZ, septum, coi 68.2 50 0.0017 27.3 11.3 6 102-107 58-63 (81)
67 2i1j_A Moesin; FERM, coiled-co 67.5 11 0.00038 41.4 8.0 78 131-208 381-458 (575)
68 3qh9_A Liprin-beta-2; coiled-c 66.4 44 0.0015 27.6 9.3 55 279-333 23-77 (81)
69 2xnx_M M protein, M1-BC1; cell 63.6 73 0.0025 29.1 11.1 65 274-338 65-129 (146)
70 3bas_A Myosin heavy chain, str 62.1 67 0.0023 26.6 11.8 73 250-329 10-82 (89)
71 1deq_A Fibrinogen (alpha chain 62.0 1.6E+02 0.0054 30.9 15.5 14 77-90 66-79 (390)
72 2xdj_A Uncharacterized protein 60.9 64 0.0022 26.6 9.5 47 84-130 19-65 (83)
73 3htk_A Structural maintenance 60.3 49 0.0017 24.9 8.2 13 77-89 25-37 (60)
74 1wt6_A Myotonin-protein kinase 60.2 32 0.0011 28.5 7.4 41 278-318 27-67 (81)
75 3ni0_A Bone marrow stromal ant 59.4 83 0.0028 26.8 11.4 73 11-83 14-86 (99)
76 1x8y_A Lamin A/C; structural p 59.1 46 0.0016 27.4 8.4 51 183-233 3-53 (86)
77 1m1j_B Fibrinogen beta chain; 58.1 1.7E+02 0.0058 31.4 14.7 28 6-33 98-125 (464)
78 1deq_A Fibrinogen (alpha chain 57.8 1.9E+02 0.0064 30.4 15.9 20 279-298 138-157 (390)
79 3mq9_A Bone marrow stromal ant 57.5 1.8E+02 0.0062 30.1 15.2 70 73-152 399-468 (471)
80 1go4_E MAD1 (mitotic arrest de 56.3 22 0.00074 30.6 6.0 68 43-110 12-93 (100)
81 4emc_A Monopolin complex subun 56.1 56 0.0019 31.1 9.3 45 65-109 14-58 (190)
82 1t6f_A Geminin; coiled-coil, c 54.8 22 0.00077 25.0 4.7 33 305-337 2-34 (37)
83 2v4h_A NF-kappa-B essential mo 54.7 1.1E+02 0.0037 26.7 12.1 17 125-141 88-104 (110)
84 1x79_B RAB GTPase binding effe 54.5 1.1E+02 0.0038 26.7 13.1 56 126-184 44-99 (112)
85 1uii_A Geminin; human, DNA rep 54.2 24 0.00081 29.4 5.7 38 302-339 38-75 (83)
86 3l4q_C Phosphatidylinositol 3- 53.6 1.4E+02 0.0049 27.8 18.1 59 58-116 11-69 (170)
87 3aco_A Pacsin2, protein kinase 53.5 1.8E+02 0.0063 29.0 18.1 26 184-209 193-218 (350)
88 3s4r_A Vimentin; alpha-helix, 52.2 1E+02 0.0035 25.7 10.5 19 92-110 56-74 (93)
89 1avy_A Fibritin, gpwac M; bact 51.8 21 0.00072 28.8 4.8 40 242-281 3-42 (74)
90 3jsv_C NF-kappa-B essential mo 51.7 94 0.0032 26.4 9.1 19 17-35 4-22 (94)
91 2i1j_A Moesin; FERM, coiled-co 51.5 17 0.00059 39.9 5.9 30 252-281 410-439 (575)
92 3cvf_A Homer-3, homer protein 50.6 1E+02 0.0035 25.3 9.7 22 48-69 11-32 (79)
93 2efl_A Formin-binding protein 49.7 1.8E+02 0.0063 27.9 23.2 7 285-291 230-236 (305)
94 3trt_A Vimentin; cytoskeleton, 48.2 1E+02 0.0034 24.4 10.4 30 6-35 7-37 (77)
95 1x8y_A Lamin A/C; structural p 47.8 89 0.0031 25.6 8.4 21 58-78 4-24 (86)
96 3nmd_A CGMP dependent protein 47.6 52 0.0018 26.6 6.6 39 45-83 21-59 (72)
97 2no2_A HIP-I, huntingtin-inter 47.1 1.4E+02 0.0047 25.7 14.2 65 43-110 15-79 (107)
98 1wlq_A Geminin; coiled-coil; 2 46.6 29 0.001 28.8 5.1 38 302-339 30-67 (83)
99 1l8d_A DNA double-strand break 45.4 1.3E+02 0.0046 25.0 12.5 33 44-76 11-43 (112)
100 2v4h_A NF-kappa-B essential mo 45.0 1.6E+02 0.0053 25.7 12.9 32 79-110 25-56 (110)
101 2w83_C C-JUN-amino-terminal ki 42.8 1.4E+02 0.0047 24.4 9.8 51 96-146 6-56 (77)
102 1wt6_A Myotonin-protein kinase 42.5 1.4E+02 0.0049 24.6 10.1 25 170-194 46-70 (81)
103 3nmd_A CGMP dependent protein 41.5 66 0.0023 26.0 6.3 42 61-102 23-64 (72)
104 3cvf_A Homer-3, homer protein 41.5 1.5E+02 0.005 24.4 8.7 24 127-150 48-71 (79)
105 3ni0_A Bone marrow stromal ant 41.2 1.7E+02 0.0057 24.9 10.2 61 259-319 23-83 (99)
106 3cl3_D NF-kappa-B essential mo 40.9 70 0.0024 28.6 7.0 53 152-204 59-112 (130)
107 2oqq_A Transcription factor HY 40.7 55 0.0019 23.8 5.1 33 306-338 6-38 (42)
108 3cl3_D NF-kappa-B essential mo 40.5 78 0.0027 28.3 7.2 46 40-85 6-51 (130)
109 3a2a_A Voltage-gated hydrogen 40.3 67 0.0023 24.7 5.8 45 249-293 6-50 (58)
110 4emc_A Monopolin complex subun 39.3 1.6E+02 0.0054 28.0 9.5 42 36-77 20-61 (190)
111 3r2p_A Apolipoprotein A-I; amp 38.6 2.4E+02 0.008 25.9 12.8 33 3-35 13-45 (185)
112 2x3v_A Syndapin I, protein kin 38.3 3E+02 0.01 27.1 24.7 9 348-356 279-287 (337)
113 3jsv_C NF-kappa-B essential mo 37.5 1.9E+02 0.0065 24.5 10.4 34 79-112 3-36 (94)
114 3iox_A AGI/II, PA; alpha helix 36.9 4.3E+02 0.015 28.5 15.9 36 180-215 6-41 (497)
115 3efg_A Protein SLYX homolog; x 36.8 84 0.0029 25.5 6.4 49 62-110 12-60 (78)
116 3vmx_A Voltage-gated hydrogen 36.8 1.3E+02 0.0045 22.5 6.7 42 252-293 2-43 (48)
117 3cve_A Homer protein homolog 1 36.7 1.7E+02 0.0057 23.6 10.1 17 51-67 8-24 (72)
118 3haj_A Human pacsin2 F-BAR; pa 36.5 4E+02 0.014 28.0 24.2 7 285-291 242-248 (486)
119 1cii_A Colicin IA; bacteriocin 35.9 4.5E+02 0.015 28.4 16.0 53 47-99 353-405 (602)
120 2pms_C Pneumococcal surface pr 35.5 2.2E+02 0.0075 25.3 9.3 25 53-77 64-88 (125)
121 3mov_A Lamin-B1; LMNB1, B-type 34.8 1.6E+02 0.0054 24.8 8.0 69 255-326 13-81 (95)
122 2xnx_M M protein, M1-BC1; cell 34.1 2.1E+02 0.0071 26.1 9.1 60 52-111 35-99 (146)
123 2w6a_A ARF GTPase-activating p 34.1 1.3E+02 0.0043 23.6 6.5 18 271-288 44-61 (63)
124 2a1j_A DNA repair endonuclease 33.0 9.7 0.00033 29.5 0.2 15 523-537 15-29 (63)
125 3fpp_A Macrolide-specific effl 32.5 1.1E+02 0.0038 30.1 7.9 18 256-273 130-147 (341)
126 1gk4_A Vimentin; intermediate 32.5 2E+02 0.0068 23.3 11.4 23 58-80 2-24 (84)
127 3ghg_C Fibrinogen gamma chain; 32.1 2.3E+02 0.0079 29.9 10.5 36 4-39 34-69 (411)
128 3ghg_B Fibrinogen beta chain; 30.9 4.3E+02 0.015 28.3 12.4 57 4-60 91-147 (461)
129 1f5n_A Interferon-induced guan 30.2 4.9E+02 0.017 28.5 13.2 44 164-207 482-525 (592)
130 2oqq_A Transcription factor HY 30.1 1.6E+02 0.0054 21.4 6.0 22 271-292 20-41 (42)
131 4etp_A Kinesin-like protein KA 29.2 1.3E+02 0.0043 31.5 7.9 8 373-380 199-206 (403)
132 1m1j_A Fibrinogen alpha subuni 28.9 5.7E+02 0.02 27.4 16.0 14 5-18 51-64 (491)
133 3mov_A Lamin-B1; LMNB1, B-type 28.7 1.8E+02 0.0062 24.4 7.4 49 56-114 11-59 (95)
134 2w6a_A ARF GTPase-activating p 28.4 2.1E+02 0.0072 22.3 7.1 35 303-337 27-61 (63)
135 2pco_A Latarcin-1, LTC-1; cont 28.2 15 0.0005 24.2 0.3 16 526-541 8-23 (26)
136 1ik9_A DNA repair protein XRCC 27.1 4.1E+02 0.014 25.3 13.0 15 61-75 136-150 (213)
137 2zxx_A Geminin; coiled-coil, c 27.1 2.2E+02 0.0075 23.4 7.3 35 242-276 36-70 (79)
138 1deb_A APC protein, adenomatou 26.9 2E+02 0.0068 21.7 6.3 42 61-102 7-48 (54)
139 4e61_A Protein BIM1; EB1-like 26.9 1.1E+02 0.0037 26.5 5.7 35 37-71 5-39 (106)
140 4dk0_A Putative MACA; alpha-ha 26.2 1.4E+02 0.0047 29.7 7.4 13 189-201 76-88 (369)
141 1uii_A Geminin; human, DNA rep 25.9 2.8E+02 0.0097 22.9 8.4 54 36-89 25-78 (83)
142 2wvr_A Geminin; DNA replicatio 25.6 2.8E+02 0.0097 26.6 8.8 52 302-357 107-158 (209)
143 1aa0_A Fibritin, gpwac E; bact 24.8 1.3E+02 0.0043 26.1 5.6 45 237-281 40-84 (113)
144 1fxk_A Prefoldin; archaeal pro 24.8 2.9E+02 0.0098 22.6 12.7 32 165-196 68-99 (107)
145 1m1j_A Fibrinogen alpha subuni 24.5 6.8E+02 0.023 26.9 14.8 29 176-205 132-160 (491)
146 3m91_A Proteasome-associated A 24.3 2.2E+02 0.0076 21.3 6.3 41 247-287 9-49 (51)
147 2no2_A HIP-I, huntingtin-inter 23.2 3.5E+02 0.012 23.1 15.8 42 126-167 53-94 (107)
148 2w83_C C-JUN-amino-terminal ki 23.1 3.1E+02 0.011 22.4 9.3 40 75-114 34-73 (77)
149 3vp9_A General transcriptional 22.3 1.4E+02 0.0048 25.2 5.4 46 174-226 41-86 (92)
150 1m1j_B Fibrinogen beta chain; 22.3 7.3E+02 0.025 26.5 17.6 54 148-201 93-146 (464)
151 1ci6_A Transcription factor AT 22.3 2.7E+02 0.0092 21.4 7.5 10 26-35 13-22 (63)
152 2dq0_A Seryl-tRNA synthetase; 21.7 7.2E+02 0.025 26.1 12.4 30 244-273 28-57 (455)
153 3iox_A AGI/II, PA; alpha helix 21.5 7.9E+02 0.027 26.5 15.9 11 494-504 329-339 (497)
154 1go4_E MAD1 (mitotic arrest de 21.3 3.8E+02 0.013 22.8 9.3 24 300-323 72-95 (100)
155 2c5k_T Syntaxin TLG1, T-snare 21.3 3.6E+02 0.012 22.5 8.1 51 53-113 39-89 (95)
156 1jnm_A Proto-oncogene C-JUN; B 21.0 2.6E+02 0.0088 21.2 6.4 57 216-291 3-59 (62)
157 2zxx_A Geminin; coiled-coil, c 20.8 2.9E+02 0.01 22.6 6.9 41 261-301 34-74 (79)
158 1m1j_C Fibrinogen gamma chain; 20.6 7.5E+02 0.026 25.9 13.6 29 167-195 103-131 (409)
159 2yy0_A C-MYC-binding protein; 20.4 1.5E+02 0.005 22.4 4.7 20 52-71 21-40 (53)
160 1z00_B DNA repair endonuclease 20.4 23 0.00078 29.2 0.2 15 523-537 29-43 (84)
161 3trt_A Vimentin; cytoskeleton, 20.2 3.1E+02 0.011 21.4 9.7 19 91-109 55-73 (77)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.32 E-value=2e-07 Score=88.90 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=47.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557 43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNE 122 (545)
Q Consensus 43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekE 122 (545)
.+|+.+...+..+...+..+...+..+...+..+...+..+...+......+..++..+..+...+..+...+..+..+.
T Consensus 13 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (284)
T 1c1g_A 13 LDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRI 92 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555444444444444444444444444444444444444444444444444444343333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 123 KLAASSVQNLLEEKHKLINELENS 146 (545)
Q Consensus 123 k~lsseIe~L~eel~kl~~ELE~~ 146 (545)
..+...+..+...+..+...+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~ 116 (284)
T 1c1g_A 93 QLFEEELDRAQERLATALQKLEEA 116 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.78 E-value=1.6e-08 Score=119.88 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHH
Q 042557 282 EEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELR 337 (545)
Q Consensus 282 ~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr 337 (545)
.+...+...++..+.++..++..+..+......+...+.+++..+..+..++++.+
T Consensus 1081 ~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~ 1136 (1184)
T 1i84_S 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136 (1184)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444555555555555555555555555543
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.66 E-value=6.4e-08 Score=114.84 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042557 252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRD 289 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~ 289 (545)
++.++..++.++..+...+...+.++..+..+...++.
T Consensus 1065 le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~ 1102 (1184)
T 1i84_S 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102 (1184)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444433333333333333333333333333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.81 E-value=0.0049 Score=61.19 Aligned_cols=60 Identities=18% Similarity=0.286 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557 135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED 194 (545)
Q Consensus 135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~ 194 (545)
++..+.++++.+..+.......+-++...++.+...+..+...+...+..+...+.++..
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 150 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN 150 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444444444444444444444444444444444444443333333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.39 E-value=0.039 Score=54.61 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 123 KLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKE 176 (545)
Q Consensus 123 k~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeake 176 (545)
..+..+|..+..++..+..++..+..+.+..+..++.+...+..+...+...+.
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~ 146 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELES 146 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555554444444444444444444443
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.38 E-value=0.038 Score=52.90 Aligned_cols=141 Identities=15% Similarity=0.145 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 042557 6 ARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEG-NNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESE 84 (545)
Q Consensus 6 V~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~-lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k 84 (545)
+.+=|.=|+..+..+..++..++.=+ ..+.-.+++|+. +-..|..++..+..|+.++..|..++..|+.++..+.
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El----~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDEL----VEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667776665555544443211 233333344442 3445666777777777777777777777777777776
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 85 RK----HSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEE 150 (545)
Q Consensus 85 ~e----L~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~ee 150 (545)
.+ +..++.++..++.....|...|+.++...+.+......+.+-+.++..+++.....+-.+-..+
T Consensus 84 ~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El 153 (189)
T 2v71_A 84 AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESEL 153 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 6777778888888888888888888888888888888888888888888887777655553333
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.27 E-value=0.047 Score=51.23 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 042557 14 KIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNE 93 (545)
Q Consensus 14 kkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekE 93 (545)
..++..|++|+..++.-.+.-+.+-.-+.+..-.+...+..+...+..|++++..|+..-..|+.++-.+...|.+-...
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~ 84 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRD 84 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888877776666665555555555555555555555555555555554444444444443333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042557 94 TSEMAKTVESLKFELETVKEEKAQALNNE 122 (545)
Q Consensus 94 l~slqkelesLkseLe~~eeel~el~ekE 122 (545)
.+.....+.+|.+.+..+..++..+..++
T Consensus 85 r~q~se~~~elq~ri~~L~~El~~~k~~~ 113 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQEEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.18 E-value=0.12 Score=49.32 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=87.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHH
Q 042557 175 KEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEE 254 (545)
Q Consensus 175 kekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~ee 254 (545)
+..+..++..+.+++.++...+.+-..-|.-++..|..+.....-|...+.++..|.+..+.-...--..+...|..++.
T Consensus 16 k~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~ 95 (189)
T 2v71_A 16 KELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLED 95 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444555566777777777778888887777777766555555555567777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhH
Q 042557 255 ENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKE 323 (545)
Q Consensus 255 e~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE 323 (545)
++..++.....|...++..|-. |..|-...+.+.+.+.+..-.++.+--.|+=|-.-+-+|+
T Consensus 96 el~~l~~~~~~l~~~ireLEq~-------NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 96 DLSQTRAIKEQLHKYVRELEQA-------NDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777777755554 5555555555555555555555555555555554444443
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.74 E-value=0.33 Score=45.54 Aligned_cols=126 Identities=18% Similarity=0.228 Sum_probs=85.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 38 LDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQ 117 (545)
Q Consensus 38 L~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~e 117 (545)
+..+.++|..++..|..-....+.+++....+.+.+..++..+.++...+...+..--.++.++..|.+.+..-....
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r-- 85 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR-- 85 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 445567888888888777777777777777777777777777777777777777777777777777777765544332
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 118 ALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVE 170 (545)
Q Consensus 118 l~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E 170 (545)
...+..|.++..++..+..+|+.++..+.++.-..-.|...|..++.+
T Consensus 86 -----~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 86 -----GHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666667777777777777777666665555555555554444
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.56 E-value=1.4 Score=57.42 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHH
Q 042557 279 ATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQE 332 (545)
Q Consensus 279 ~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~E 332 (545)
.+..|.+.|...+...+..+.-|..=++-+..|..+|.+........+.+|.-+
T Consensus 2053 ~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2053 TLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 334444444444555555555566666777888889999998888888887765
No 11
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.18 E-value=0.13 Score=44.22 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 042557 10 VEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSM 89 (545)
Q Consensus 10 l~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~ 89 (545)
..=|++++..|..+++.|..-. ..+...+.........+..+|.+|+.++..++.++......+.+++..+..
T Consensus 4 MdaIKkKm~~lk~e~e~a~dra-------e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRA-------EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999888765433 234456677777778889999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 90 AKNETSEMAKTVESLKFELETVKE 113 (545)
Q Consensus 90 ~ekEl~slqkelesLkseLe~~ee 113 (545)
..+........+.+|...|..+++
T Consensus 77 ~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 77 AEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888888888888888877766653
No 12
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.02 E-value=0.95 Score=41.94 Aligned_cols=97 Identities=22% Similarity=0.254 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 042557 111 VKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEA 190 (545)
Q Consensus 111 ~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~ 190 (545)
++.++..+..+-..+.+.+..|.+++....+.|..+....++.-...+.....|+.++..+.++..++..+...+..+..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555566666666666666666666666655556666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042557 191 QIEDLRIVLKATNEKYE 207 (545)
Q Consensus 191 Eie~Lq~~L~~aE~k~~ 207 (545)
.+++|.-.|..+..+|.
T Consensus 106 ~id~lEd~L~~~Kek~~ 122 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYK 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666555555
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.78 E-value=5.4 Score=52.19 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557 148 EEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 148 ~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
.+++..++.+..+...|.+.+.+++++-.++..-+.+.+..+..+...+..+
T Consensus 1934 ~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~ 1985 (3245)
T 3vkg_A 1934 AQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQL 1985 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444445555444444444444444444444443333
No 14
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.58 E-value=0.29 Score=41.98 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557 11 EEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMA 90 (545)
Q Consensus 11 ~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ 90 (545)
.=|++++..|..+++.|..-. ..+...+............+|.+|+.++..++.++......+..+...|...
T Consensus 5 d~iKkKm~~lk~e~e~a~d~a-------e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRA-------EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999888887765433 2334566666777777888899999999988888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042557 91 KNETSEMAKTVESLKFELETVK 112 (545)
Q Consensus 91 ekEl~slqkelesLkseLe~~e 112 (545)
++.......+|.+|.-.|..++
T Consensus 78 ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 78 EKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 8777777777888777776654
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.13 E-value=0.71 Score=54.57 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=11.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHH
Q 042557 176 EKLLSSQTEHETYEAQIEDLR 196 (545)
Q Consensus 176 ekl~~~Q~Ele~~r~Eie~Lq 196 (545)
.++..++.+...++.++.+|.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555
No 16
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.12 E-value=2 Score=39.71 Aligned_cols=133 Identities=16% Similarity=0.245 Sum_probs=75.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 72 TIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEE 151 (545)
Q Consensus 72 ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeE 151 (545)
++++++.+|+.+..++...+..+..+..++..+ -+.+..+...+..++..-....+++..+...|..+-.+-+
T Consensus 22 EvaR~E~dLEraEERae~aE~k~~eLEeeL~~v-------~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE 94 (155)
T 2efr_A 22 EVARLKKLLERAEERAELSEGKSAELEEELKTV-------TNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666555555555544444444444 4443334444444444444444444445555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 042557 152 KSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTN 222 (545)
Q Consensus 152 kekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk 222 (545)
-+..-+..|...+..++..+...+.++...+.+|++.-.++..+. .-+|.-+.+|.++++
T Consensus 95 ~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~-----------~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 95 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELL-----------SKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cchHHHHHHHHHhhc
Confidence 445555566666777777777788888888778776666665542 234555677777664
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.98 E-value=0.79 Score=39.34 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557 217 IGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA 296 (545)
Q Consensus 217 ~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~ 296 (545)
++.+++++..++.+.+.+.+-... ++..++.+......+-..+....++++.+.++.+.+...|..+..
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~-----------~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQ-----------AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888776665 344444455555555555555666677777778888888888877
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhH
Q 042557 297 EVIYMQETLGQARAESMKLKESF 319 (545)
Q Consensus 297 e~~ea~e~~~ea~~e~~~Lk~~l 319 (545)
.+.++...+..+-+++..|.-.+
T Consensus 73 kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 73 SLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776554
No 18
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.82 E-value=1.5 Score=38.59 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 042557 57 SEIAALKEKVGLLEMTIGRQKADLDESERK----HSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNL 132 (545)
Q Consensus 57 sEI~~LqeKve~LE~ev~~le~~leE~k~e----L~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L 132 (545)
..+..|+.++..|..++..|+.++...+.+ +..+++++..++..-..|...|+.++...+.+...+..+.+.+.++
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 345667777777777777777777766543 5557777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 042557 133 LEEKHKLINELENS 146 (545)
Q Consensus 133 ~eel~kl~~ELE~~ 146 (545)
..++|....+.-.+
T Consensus 83 E~k~n~aiErnalL 96 (111)
T 2v66_B 83 EQRLNQAIERNAFL 96 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766654444
No 19
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.47 E-value=1.5 Score=37.53 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042557 217 IGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEA 296 (545)
Q Consensus 217 ~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~ 296 (545)
.+.+++++..++.+.+.+.+-... ++..++.+......+-..+....++++.+.++...+...|..+..
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~-----------~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~ 72 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQ-----------AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888776666 444455555555555556666666777777777888888888777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhH
Q 042557 297 EVIYMQETLGQARAESMKLKESF 319 (545)
Q Consensus 297 e~~ea~e~~~ea~~e~~~Lk~~l 319 (545)
.+..+...+..+-++++.|.-.+
T Consensus 73 kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 73 KLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777887777777776554
No 20
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.02 E-value=3.8 Score=37.93 Aligned_cols=87 Identities=22% Similarity=0.262 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557 252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL-KEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI 330 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L-k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~ 330 (545)
...++..++..+.+-......+|.....+..|.+.|-..| .+|=..+..|+..-..+..-|..|...+.+++.-|.+++
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888889999999999999999999999999 778777777777777778889999999999999999999
Q ss_pred HHHHHHHh
Q 042557 331 QENEELRA 338 (545)
Q Consensus 331 ~Ene~Lr~ 338 (545)
...-.|+.
T Consensus 136 ~ql~~LK~ 143 (154)
T 2ocy_A 136 LQLKNLKK 143 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 21
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.81 E-value=1.7 Score=37.33 Aligned_cols=72 Identities=22% Similarity=0.257 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhH
Q 042557 252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL-KEVEAEVIYMQETLGQARAESMKLKESFLDKE 323 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L-k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE 323 (545)
.+.++..|+..+.+-......+|.....+..|.+.|-..| .+|=..+..|+-.-..+..-|.+|+..|.|++
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567777888888888999999999999999999999999 77777777777777777888999999998876
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.77 E-value=2.3 Score=50.33 Aligned_cols=15 Identities=33% Similarity=0.353 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 042557 253 EEENSSLEKEINRLV 267 (545)
Q Consensus 253 eee~~~~~~e~~~l~ 267 (545)
+++...++.+++.-+
T Consensus 1062 ~~~~~~~~~~~~~~~ 1076 (1080)
T 2dfs_A 1062 VEETKQLELDLNDER 1076 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555554433
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.40 E-value=1.4 Score=47.58 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557 135 EKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 135 el~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
+...+..++.....+.......++.+......++...+..+.++..++.++..++.++..|...+
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333344433333334444444455555555555666666666666666666666655433
No 24
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=91.80 E-value=2.8 Score=37.01 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557 259 LEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRA 338 (545)
Q Consensus 259 ~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~ 338 (545)
|+.++.+..+.|+.+|.++..-..=..-|++.|+.-.+.. +..+.++..++..|+..|.|.+.++..+..+|+.|.+
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 5566677778888888888888888888888885533333 6679999999999999999999999999999998665
Q ss_pred h
Q 042557 339 R 339 (545)
Q Consensus 339 ~ 339 (545)
+
T Consensus 107 r 107 (121)
T 3mq7_A 107 R 107 (121)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.56 E-value=1.8 Score=38.52 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHH
Q 042557 160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKIS 234 (545)
Q Consensus 160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s 234 (545)
-..+|.....++.+.+..+..++.+++.++.....|..+|.+++.+|...+..+...|..+...+.+++.++...
T Consensus 27 ~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 27 HGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345566777888888999999999999999999999999999999999877777776666665555544444443
No 26
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.53 E-value=7.1 Score=34.62 Aligned_cols=8 Identities=13% Similarity=0.314 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 042557 162 SALHEVSV 169 (545)
Q Consensus 162 ~AL~E~e~ 169 (545)
..|+++..
T Consensus 83 ~~l~el~~ 90 (129)
T 2fxo_A 83 AKVKEMNK 90 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 27
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.69 E-value=1.5 Score=39.69 Aligned_cols=87 Identities=21% Similarity=0.235 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHH
Q 042557 252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL-KEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVI 330 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L-k~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~ 330 (545)
...++..++..+.+-......+|.....+..|.+.|-..| .+|=..+..|+-.-..+..-|..|...+.+++.-|.+++
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq 123 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLT 123 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888999999999999999999999999 778777777777777778889999999999999999988
Q ss_pred HHHHHHHh
Q 042557 331 QENEELRA 338 (545)
Q Consensus 331 ~Ene~Lr~ 338 (545)
...-+|+.
T Consensus 124 ~QL~~LK~ 131 (135)
T 2e7s_A 124 LQLKNLKK 131 (135)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 87777654
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.58 E-value=6.3 Score=34.63 Aligned_cols=88 Identities=24% Similarity=0.228 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHH
Q 042557 252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQ 331 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~ 331 (545)
++.++..++.+++.+...-...+-++..++...+.+|.++..-.+....+...+.-++-..-...-...|+|+.+++++.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444455555566666666666664433333334444444455555555667889999999999
Q ss_pred HHHHHHhh
Q 042557 332 ENEELRAR 339 (545)
Q Consensus 332 Ene~Lr~~ 339 (545)
|..-||..
T Consensus 98 El~FLKk~ 105 (119)
T 3ol1_A 98 EIAFLKKL 105 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887754
No 29
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.39 E-value=11 Score=34.82 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 151 EKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 151 Ekekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
......+++|+++|=+ ++-.=+...+.+...+......|+..|.+++..+.
T Consensus 82 ~~ie~ElEeLTasLFe------EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 82 DKLNKEVEDLTASLFD------EANNMVADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555432 22222222333444455556667777777766654
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.96 E-value=4.5 Score=33.10 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 61 ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 61 ~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
.+++|+..+..+.......++.+...+....+.......+|.+|...|..++.+
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344555555554444444444444444444444444444444444444444444
No 31
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.57 E-value=5.4 Score=35.44 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHHH
Q 042557 160 LASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKISK 235 (545)
Q Consensus 160 La~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s~ 235 (545)
-..+|.....++.+.+..+..++.+++.++.....|..+|.+++.+|...+..+...|..+-..+.+++.++...+
T Consensus 29 ~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 29 NSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888889999999999999999999999999999999998777777766666655555444444433
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.32 E-value=3.4 Score=37.42 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=59.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 042557 3 ESYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDE 82 (545)
Q Consensus 3 e~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE 82 (545)
+.++..+..-|..++..+... ..|..+-. .-..+...| .+-++|-.+..++..|..++..+..++..++.++..
T Consensus 27 ee~L~~vA~~vd~km~ei~~~----~~~~~l~~-~r~aVLaAL-NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~ 100 (138)
T 3hnw_A 27 EEYLQRVASYINNKITEFNKE----ESYRRMSA-ELRTDMMYL-NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----HHHHTSCH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cCCCCCCH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776532 11222222 111111111 122334445555666666666666666666766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 83 SERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 83 ~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
+...+..+.+++..++.++..|..++..++.+
T Consensus 101 ~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 101 AQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666555444
No 33
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.30 E-value=6.6 Score=33.16 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 49 NDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 49 k~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
+..+..+|...+.-=++|+.|+.+...|+.+|......- ...-..-+..+|..|+..|..+..+
T Consensus 8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~--~~~~~~~ye~~i~~Lr~~i~~~~~e 71 (93)
T 3s4r_A 8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG--KSRLGDLYEEEMRELRRQVDQLTND 71 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888899999998888888887765431 1122233455555555555444333
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.12 E-value=4.8 Score=36.41 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=47.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 76 QKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENS 146 (545)
Q Consensus 76 le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~ 146 (545)
+-.++-.++.....++.++..+.+++++|+.++-.+...+..+......+..++..|..++.++..++...
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555566666666666666677777777777777666666666666677777777777777777666543
No 35
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.19 E-value=15 Score=32.21 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=42.5
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhH
Q 042557 247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKE 323 (545)
Q Consensus 247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE 323 (545)
..|..++.++..++.....+..-++..|-. |..|-..-+.+-+.+.+....++.|--.|+-|-.-+.+|+
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~-------NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe 104 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQA-------NDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666644433 5556555566666666666666666666666655555444
No 36
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.30 E-value=15 Score=31.44 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557 159 SLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 159 eLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
+....+..+...+...+.....+......+..|++.|-++|
T Consensus 23 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 23 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555666666667777777777777
No 37
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.11 E-value=17 Score=32.00 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 042557 11 EEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESE 84 (545)
Q Consensus 11 ~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k 84 (545)
.|..+--+.|+.|+-.|.....-....-..--.=+..+++.|....++. +.++..|+.+|..|...|.++.
T Consensus 21 ~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 21 MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777889999999987776666444444455566666666666555 4455555555555444444433
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.72 E-value=18 Score=31.94 Aligned_cols=68 Identities=10% Similarity=0.236 Sum_probs=28.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 46 EGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA 116 (545)
Q Consensus 46 E~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~ 116 (545)
...+..+.+++-.|..|+..+..+......|+..+.+...... .++..++..|..|..+|..++.++.
T Consensus 32 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 32 RNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3334444444444444444444444444444444444333332 2234455555555555555544433
No 39
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.58 E-value=12 Score=30.43 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 133 LEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 133 ~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
..+++.+..+.+.+..+.+... ..|.........+...+..++..+..+..+++.....|..+..++.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e-------~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAE-------ADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544444333 3333333344444444444444555555555555555555555544
No 40
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=85.13 E-value=16 Score=33.39 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557 134 EEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED 194 (545)
Q Consensus 134 eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~ 194 (545)
+++..+...|..++..-+.+-.-+++.+-.|.-++..+..+..++......+..+..++..
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~ 112 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKT 112 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444455555555555555555555555554444444444333
No 41
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=83.32 E-value=14 Score=30.58 Aligned_cols=82 Identities=22% Similarity=0.226 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHH
Q 042557 257 SSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEEL 336 (545)
Q Consensus 257 ~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~L 336 (545)
..|+.++..+...-...+-++..++...+.+|.++..-.+-...+.-.+.-++-..-.+.=...|+|..+.+++.|..-|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444446666677777777444444444444444555555556667789999999999999888
Q ss_pred Hh
Q 042557 337 RA 338 (545)
Q Consensus 337 r~ 338 (545)
|.
T Consensus 83 kk 84 (86)
T 3swk_A 83 KK 84 (86)
T ss_dssp TT
T ss_pred hh
Confidence 74
No 42
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.28 E-value=12 Score=40.60 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 80 LDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA 116 (545)
Q Consensus 80 leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~ 116 (545)
+..++..++..-..++.||.-|..++.+|..++.+++
T Consensus 119 IqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333335556677777777777777666644
No 43
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=83.14 E-value=13 Score=32.09 Aligned_cols=72 Identities=19% Similarity=0.117 Sum_probs=51.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 45 LEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA 116 (545)
Q Consensus 45 LE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~ 116 (545)
|..+-.++..+.-..+.|.....++--+|..|+-.+++....+.++++++....+++..++..+..+..++.
T Consensus 4 L~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 4 LAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777778888888888888888888888888888888888888888777777777666555533
No 44
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.70 E-value=14 Score=32.75 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042557 159 SLASALHEVSVEAREAKE 176 (545)
Q Consensus 159 eLa~AL~E~e~E~eeake 176 (545)
++...|..++.++.+++.
T Consensus 81 ~~q~~i~~lE~eL~~~r~ 98 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLRC 98 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.67 E-value=20 Score=33.03 Aligned_cols=55 Identities=7% Similarity=0.075 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHH
Q 042557 281 KEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEE 335 (545)
Q Consensus 281 ~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~ 335 (545)
..++..|+..+++.+.++.+=...++..+.+...|.-.+.-.|..+..+..||..
T Consensus 74 ~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 74 QKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444
No 46
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.01 E-value=24 Score=29.79 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 47 GNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA 116 (545)
Q Consensus 47 ~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~ 116 (545)
.+...|..+..+-+.|-..+..++++-..+...|..+..+......+...+..+.+.+...+-.+.+++.
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~ 77 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELK 77 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555444454544444455554444444444444433
No 47
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=80.77 E-value=8.2 Score=34.18 Aligned_cols=46 Identities=24% Similarity=0.177 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHH
Q 042557 215 HEIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLV 267 (545)
Q Consensus 215 ~e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~ 267 (545)
..|+.|+..++.++.+++....+... .|..+...+..|..+++.-+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~-------~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQR-------VVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777776666 34445555555555554443
No 48
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.76 E-value=28 Score=30.38 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 169 VEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 169 ~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
..++.++..+.....+-..+..++..++.++.+...||+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345555555555555555555666666666666666666
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.94 E-value=21 Score=29.56 Aligned_cols=49 Identities=22% Similarity=0.199 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 62 LKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELET 110 (545)
Q Consensus 62 LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~ 110 (545)
|..||..+-..|.-++-++++++........+...++.....|..++..
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~q 59 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNH 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344444444444444444444444444444444433333333333333
No 50
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.75 E-value=6.9 Score=35.43 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557 168 SVEAREAKEKLLSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 168 e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
...+.+.+.....+......+..|++.|-++|
T Consensus 52 ~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 52 REDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555666677777777777
No 51
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=78.46 E-value=18 Score=29.98 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=23.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 172 REAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 172 eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
++.+.++..+..+-..+..++..++.++.+...||+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555666777777777777777777
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.65 E-value=24 Score=32.53 Aligned_cols=68 Identities=24% Similarity=0.295 Sum_probs=42.8
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhh
Q 042557 248 CVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDK 322 (545)
Q Consensus 248 ~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dk 322 (545)
.|..++.++..++..+..+.+.+. .-..-++.+++-+-.+.-+++.+..++.-+..+|..|-+.++++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~-------eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIA-------LKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555544444 44444555555555555667778888888899999998888654
No 53
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=77.38 E-value=34 Score=29.97 Aligned_cols=55 Identities=22% Similarity=0.179 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557 284 EAQLRDSLKEVEAEVIYMQETLGQA----RAESMKLKESFLDKETELQSVIQENEELRA 338 (545)
Q Consensus 284 ~~~lr~~Lk~ae~e~~ea~e~~~ea----~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~ 338 (545)
...|......+|+.+.+++.+...+ ..+.+.|....-..=.+|..|+.||+-|..
T Consensus 47 V~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 47 ISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 3444444455555555555444444 445566666666666777888888888764
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.14 E-value=35 Score=35.84 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 042557 19 ELEMQAEEAHKLKR 32 (545)
Q Consensus 19 sLE~QAeKA~ky~e 32 (545)
.|+.++.+..++..
T Consensus 371 ~le~~~~~~~~~~~ 384 (487)
T 3oja_A 371 ALDEQVSNGRRAHA 384 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33333444333333
No 55
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=76.63 E-value=43 Score=30.23 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=62.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHH
Q 042557 271 KETEEDACATKEEEAQLRDSLKEVEAEVIYM-QETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEE 349 (545)
Q Consensus 271 ~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea-~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~E 349 (545)
...+.+.+.+...|..|+..++........+ .....+...-...|++..-..+.+|+.+.++.-++...+..+.....+
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l~ek~~~e~~~le~~L~e~~e~~~~~l~~~~e~~~~~~~~~~e~~~~~~~ 132 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKA 132 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566777777777777776666555 445555566677777777777778888887766888888888888888
Q ss_pred HHHHHHHHH
Q 042557 350 LSSLLEEAM 358 (545)
Q Consensus 350 L~~ll~ea~ 358 (545)
+...|+.|+
T Consensus 133 ~ek~ls~As 141 (155)
T 2oto_A 133 LELAIDQAS 141 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888873
No 56
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.94 E-value=39 Score=36.78 Aligned_cols=8 Identities=38% Similarity=0.754 Sum_probs=0.0
Q ss_pred hhHHhhhh
Q 042557 527 PFIRKFGS 534 (545)
Q Consensus 527 ~ll~kfg~ 534 (545)
|.|+.||+
T Consensus 516 ~~~~ef~s 523 (562)
T 3ghg_A 516 PMLGEFVS 523 (562)
T ss_dssp --------
T ss_pred cchhhhcc
Confidence 45556654
No 57
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=75.89 E-value=27 Score=30.82 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 042557 158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDL 195 (545)
Q Consensus 158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~L 195 (545)
..|...+..+++++.+.+...+.+..+.+.++.+.+.+
T Consensus 43 ~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 43 LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443444444444444444444
No 58
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=75.08 E-value=37 Score=28.66 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 042557 157 MESLASALHEVSVEAREAKEKLLSSQTEHETY 188 (545)
Q Consensus 157 ~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~ 188 (545)
+-.+...+-++..+...+..++...+.-++.+
T Consensus 62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444433
No 59
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=74.28 E-value=39 Score=29.15 Aligned_cols=70 Identities=16% Similarity=0.091 Sum_probs=41.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 042557 116 AQALNNEKLAASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEH 185 (545)
Q Consensus 116 ~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~El 185 (545)
.++.++.+++=-....|.++...+..+++.+++.++.....+-.+.-.+.+...+++..+-.+..++..+
T Consensus 5 ~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~ 74 (103)
T 4h22_A 5 AEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQF 74 (103)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777788888888888888888777766665554444444444444444444333333333
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.36 E-value=91 Score=32.57 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=58.1
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 042557 247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESF 319 (545)
Q Consensus 247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l 319 (545)
+.+++.+.-...++.+.++.........++.+.+.++++.++.-+.++...+.+|+.++..|...-+.|.+.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 4566677777777777777777777778888888889999999999999999999999888877766666544
No 61
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=73.18 E-value=28 Score=28.76 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=38.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 45 LEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFE 107 (545)
Q Consensus 45 LE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkse 107 (545)
++.-..+.+.+--+|..|.-++..++.+-...+..+-..+.++...++.+.....+|..|..+
T Consensus 14 ~ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 14 QEEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344445555666777777777777777666666666666655555555555555555555443
No 62
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=72.67 E-value=55 Score=29.52 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 042557 158 ESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVL 199 (545)
Q Consensus 158 EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L 199 (545)
+.|+..+--+..+++..+-+....-..++.++-+.+.++..|
T Consensus 115 e~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl 156 (167)
T 4gkw_A 115 ESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKI 156 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 334444444444444444444444444444454444444333
No 63
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=70.08 E-value=64 Score=29.27 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 63 KEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLK 105 (545)
Q Consensus 63 qeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLk 105 (545)
+.++..++-.+.+.+..+......|..+.+....-..-.-.|.
T Consensus 2 ~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE 44 (147)
T 2b9c_A 2 NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIE 44 (147)
T ss_dssp ---------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555444444333333333
No 64
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=68.69 E-value=30 Score=28.38 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHHH
Q 042557 184 EHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKIS 234 (545)
Q Consensus 184 Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~s 234 (545)
+++.++.....|..+|.+++.+|...+......|..+...+.+++.++...
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888889999999999998777776666666555555544444333
No 65
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=68.35 E-value=1.4e+02 Score=32.44 Aligned_cols=32 Identities=6% Similarity=0.178 Sum_probs=20.9
Q ss_pred HHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHH
Q 042557 236 AEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLK 271 (545)
Q Consensus 236 ~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~ 271 (545)
.-|+. .++ .|++.++++.-+++.++.+...+.
T Consensus 388 ~~w~~--~~~--~~~~~~~dv~~~~a~~d~~~~~~s 419 (551)
T 2b5u_A 388 RMWQM--AGL--KAQRAQTDVNNKQAAFDAAAKEKS 419 (551)
T ss_dssp HHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhh--ccc--hhhhhhhhhhhHHHHHHHHhhccc
Confidence 46776 333 677777777777777776655443
No 66
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.16 E-value=50 Score=27.30 Aligned_cols=6 Identities=33% Similarity=0.318 Sum_probs=2.1
Q ss_pred HHHHHH
Q 042557 102 ESLKFE 107 (545)
Q Consensus 102 esLkse 107 (545)
..|+.+
T Consensus 58 ~qLk~E 63 (81)
T 2jee_A 58 NHLKEQ 63 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 67
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=67.53 E-value=11 Score=41.37 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 131 NLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYES 208 (545)
Q Consensus 131 ~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~ 208 (545)
.|..+...+..+...+...-.+..+..+.|...+.++...+..+.+.....-.+..+++.++...+.++..|..++..
T Consensus 381 ~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~ 458 (575)
T 2i1j_A 381 ELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLA 458 (575)
T ss_dssp -------------------------------------------------------------CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344667777777777777777777777777777777777777777766666553
No 68
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=66.37 E-value=44 Score=27.62 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHH
Q 042557 279 ATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQEN 333 (545)
Q Consensus 279 ~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~En 333 (545)
.+-.|.-.||-.+-+++++-..-.-.+.--+++.+.|+..|.-++.++..++.+.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5667778888888888888888888888888999999999999999988887654
No 69
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=63.65 E-value=73 Score=29.07 Aligned_cols=65 Identities=22% Similarity=0.176 Sum_probs=40.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557 274 EEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSVIQENEELRA 338 (545)
Q Consensus 274 E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~ 338 (545)
+...+.++......|..++.++..+..+...+..+.++...|.+..--.+.--+.+.++++..|.
T Consensus 65 e~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASRe 129 (146)
T 2xnx_M 65 EKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASRE 129 (146)
T ss_dssp TTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC----------------
T ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33447888888888888899999998888888888888888888777777777777777776554
No 70
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=62.05 E-value=67 Score=26.55 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=33.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHHHHH
Q 042557 250 KKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETELQSV 329 (545)
Q Consensus 250 K~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eLq~i 329 (545)
.+.++++..+..++..+.+.+...+.... +|...+..+..+.+.....+.++-.-..+|.....++|..|.-+
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rk-------ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKK-------ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666654443322 22222333333333333334444444444444444444444444
No 71
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.01 E-value=1.6e+02 Score=30.88 Aligned_cols=14 Identities=0% Similarity=-0.090 Sum_probs=5.6
Q ss_pred hhhHHHHHHHHHHH
Q 042557 77 KADLDESERKHSMA 90 (545)
Q Consensus 77 e~~leE~k~eL~~~ 90 (545)
+..|++++..|...
T Consensus 66 ~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 66 TSRINKLRDSLFNY 79 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 72
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=60.92 E-value=64 Score=26.61 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 042557 84 ERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQ 130 (545)
Q Consensus 84 k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe 130 (545)
...+..+...+..++.+|..|++.++...-++..+..+-+.+...|.
T Consensus 19 ~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 19 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667777777777777666666655555555554443
No 73
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=60.30 E-value=49 Score=24.92 Aligned_cols=13 Identities=8% Similarity=0.113 Sum_probs=4.7
Q ss_pred hhhHHHHHHHHHH
Q 042557 77 KADLDESERKHSM 89 (545)
Q Consensus 77 e~~leE~k~eL~~ 89 (545)
...++.++..+..
T Consensus 25 ~~~~~~~k~~~~~ 37 (60)
T 3htk_A 25 TDEFLKAKEKINE 37 (60)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 74
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=60.17 E-value=32 Score=28.46 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 042557 278 CATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKES 318 (545)
Q Consensus 278 ~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~ 318 (545)
+++++|+...|..+...++.+.++.....++..+..+|+..
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~ 67 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQER 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888887777777665554444433
No 75
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=59.37 E-value=83 Score=26.78 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 042557 11 EEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDES 83 (545)
Q Consensus 11 ~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~ 83 (545)
.|...--+.|+.|+-+|.....-....-..--.-+..+++.|..-..+...-+.++..|+.+|..|...|.++
T Consensus 14 ~ECrNvT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 14 AECRNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788999988887776666555555566667777777777666666667777777777776666654
No 76
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=59.12 E-value=46 Score=27.43 Aligned_cols=51 Identities=8% Similarity=0.102 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhHhHH
Q 042557 183 TEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKEAKDESKI 233 (545)
Q Consensus 183 ~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~~~~E~e~ 233 (545)
.+++.++.....|..+|.+++.+|...+......|..+...+.+++.++..
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777788889999999998876666666666555555444444333
No 77
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=58.13 E-value=1.7e+02 Score=31.41 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 6 ARNLVEEWKIRVEELEMQAEEAHKLKRS 33 (545)
Q Consensus 6 V~DLl~Evkkql~sLE~QAeKA~ky~el 33 (545)
|+.-|.+++.++..|...--.+..|-..
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~ 125 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNM 125 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 4444566666666665555555555443
No 78
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.82 E-value=1.9e+02 Score=30.35 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 042557 279 ATKEEEAQLRDSLKEVEAEV 298 (545)
Q Consensus 279 ~~~~E~~~lr~~Lk~ae~e~ 298 (545)
+|+.-+..++..++.+|..+
T Consensus 138 ~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 138 LLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 79
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=57.51 E-value=1.8e+02 Score=30.11 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=45.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 73 IGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENSREEEEK 152 (545)
Q Consensus 73 v~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~~~eeEk 152 (545)
...++.+|++++.-|.+++...+.....|.-|...|+....+ .+ ..|..+..++..+.++|+.++.+++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ---GQ-------KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH---HH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888887777666554333 11 24555555666666666666555443
No 80
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.28 E-value=22 Score=30.59 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=38.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGR--QKADLDE------------SERKHSMAKNETSEMAKTVESLKFEL 108 (545)
Q Consensus 43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~--le~~leE------------~k~eL~~~ekEl~slqkelesLkseL 108 (545)
.+|..++..++.+.-+...|..++..|+..+.. +..+++- +.......++.+..++.+++.|+..+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666676666666666544 3334322 22233344566666666666666555
Q ss_pred HH
Q 042557 109 ET 110 (545)
Q Consensus 109 e~ 110 (545)
..
T Consensus 92 ~~ 93 (100)
T 1go4_E 92 RA 93 (100)
T ss_dssp TT
T ss_pred HH
Confidence 44
No 81
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=56.10 E-value=56 Score=31.06 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 65 KVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELE 109 (545)
Q Consensus 65 Kve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe 109 (545)
++++-+.-|..+..+...+...+.....++..++..|.+++....
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333334444444444444444444444455555555554443
No 82
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=54.78 E-value=22 Score=25.01 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=28.6
Q ss_pred HHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHH
Q 042557 305 LGQARAESMKLKESFLDKETELQSVIQENEELR 337 (545)
Q Consensus 305 ~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr 337 (545)
+..+-.+|.+|--.+-.|..++..+..+|++|+
T Consensus 2 L~~~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 2 LYEALKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 445667889999999999999999999999986
No 83
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=54.70 E-value=1.1e+02 Score=26.69 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042557 125 AASSVQNLLEEKHKLIN 141 (545)
Q Consensus 125 lsseIe~L~eel~kl~~ 141 (545)
+.+++..|..++..+..
T Consensus 88 l~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 34444444444444443
No 84
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=54.49 E-value=1.1e+02 Score=26.71 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 042557 126 ASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTE 184 (545)
Q Consensus 126 sseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~E 184 (545)
..+|..|..........|..++......+ ......|..+....+.+-.++..+|.+
T Consensus 44 k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q---~~vq~qL~~Lt~~Re~V~~eL~rLQ~e 99 (112)
T 1x79_B 44 SHQISALVLRAQASEILLEELQQGLSQAK---RDVQEQMAVLMQSREQVSEELVRLQKD 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666666666666666555 444445555555555555544444443
No 85
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=54.18 E-value=24 Score=29.38 Aligned_cols=38 Identities=29% Similarity=0.377 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhh
Q 042557 302 QETLGQARAESMKLKESFLDKETELQSVIQENEELRAR 339 (545)
Q Consensus 302 ~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~ 339 (545)
+.++.++=.+|..|...+..++.++..+..+|+.||.-
T Consensus 38 R~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 38 RKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777889999999999999999999999998853
No 86
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=53.60 E-value=1.4e+02 Score=27.77 Aligned_cols=59 Identities=8% Similarity=0.161 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 58 EIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEEKA 116 (545)
Q Consensus 58 EI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eeel~ 116 (545)
-|..+-.+...+..++-.....++.+...+....+++.-.+..+..+...+.-++++..
T Consensus 11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~ 69 (170)
T 3l4q_C 11 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQ 69 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777777777777777777778888888888888877777777643
No 87
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=53.48 E-value=1.8e+02 Score=28.98 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 184 EHETYEAQIEDLRIVLKATNEKYESM 209 (545)
Q Consensus 184 Ele~~r~Eie~Lq~~L~~aE~k~~~~ 209 (545)
+++.++..+..++..+..|...|...
T Consensus 193 ~~eK~~~k~~k~~~~~~~a~~~Y~~~ 218 (350)
T 3aco_A 193 QLKKLQDKIEKCKQDVLKTKEKYEKS 218 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555533
No 88
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=52.23 E-value=1e+02 Score=25.71 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042557 92 NETSEMAKTVESLKFELET 110 (545)
Q Consensus 92 kEl~slqkelesLkseLe~ 110 (545)
.++..++..|..+..+-..
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~ 74 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKAR 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 89
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=51.85 E-value=21 Score=28.81 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=33.6
Q ss_pred hhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 042557 242 ELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATK 281 (545)
Q Consensus 242 E~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~ 281 (545)
|+|+.++||..+-.+.++..+++-+...+..+|..++++.
T Consensus 3 ErGl~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 3 ESGLTNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 7899999999999999999999999999999999888875
No 90
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=51.75 E-value=94 Score=26.36 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 042557 17 VEELEMQAEEAHKLKRSAS 35 (545)
Q Consensus 17 l~sLE~QAeKA~ky~elk~ 35 (545)
+..|..++.-|......|.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq 22 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQ 22 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 4445555555555444433
No 91
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=51.51 E-value=17 Score=39.88 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 042557 252 SEEENSSLEKEINRLVNLLKETEEDACATK 281 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~ 281 (545)
++.++..+...+.++.+.....+.++..++
T Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 439 (575)
T 2i1j_A 410 LEDEIRAKQEEVSRIQQEVELKDSETRRLQ 439 (575)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333
No 92
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=50.63 E-value=1e+02 Score=25.27 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=9.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 042557 48 NNDKLHDAESEIAALKEKVGLL 69 (545)
Q Consensus 48 lk~~LeeaesEI~~LqeKve~L 69 (545)
+...|+.+......|..+++.+
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~l 32 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAM 32 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHH
Confidence 3344444444444444444433
No 93
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=49.70 E-value=1.8e+02 Score=27.85 Aligned_cols=7 Identities=14% Similarity=0.529 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 042557 285 AQLRDSL 291 (545)
Q Consensus 285 ~~lr~~L 291 (545)
..|++.|
T Consensus 230 ~~lk~~l 236 (305)
T 2efl_A 230 VRMGESM 236 (305)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444445
No 94
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=48.18 E-value=1e+02 Score=24.36 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHhHH
Q 042557 6 ARNLVEEWKIRVEELEMQ-AEEAHKLKRSAS 35 (545)
Q Consensus 6 V~DLl~Evkkql~sLE~Q-AeKA~ky~elk~ 35 (545)
...+|.||+.++..+=.. -..|+.++..+.
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~~y~~k~ 37 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEEWYKSKF 37 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456788888877765332 223444544443
No 95
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.75 E-value=89 Score=25.63 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 042557 58 EIAALKEKVGLLEMTIGRQKA 78 (545)
Q Consensus 58 EI~~LqeKve~LE~ev~~le~ 78 (545)
+|..|+.++..|+..+...+.
T Consensus 4 eie~L~~q~~~Le~~l~e~E~ 24 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLED 24 (86)
T ss_dssp --------CTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555554544444
No 96
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.57 E-value=52 Score=26.63 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=20.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 042557 45 LEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDES 83 (545)
Q Consensus 45 LE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~ 83 (545)
|..+...|.....+|......++.++..+......+..+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555444444444333
No 97
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=47.06 E-value=1.4e+02 Score=25.67 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 43 RQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELET 110 (545)
Q Consensus 43 ~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~ 110 (545)
++|-..+..-.++...+..|..++..+.. ....+..+....+..+.+++.....+|..|+..+..
T Consensus 15 KqL~~~~q~~~e~e~~k~eL~~~~~~~~~---~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~ 79 (107)
T 2no2_A 15 KQVSMARQAQVDLEREKKELEDSLERISD---QGQRKTQEQLEVLESLKQELATSQRELQVLQGSLET 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444331 122233333334444444444444444444444433
No 98
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=46.59 E-value=29 Score=28.83 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhh
Q 042557 302 QETLGQARAESMKLKESFLDKETELQSVIQENEELRAR 339 (545)
Q Consensus 302 ~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~ 339 (545)
+.++.++=.+|..|...+-.++.++..+..+|..|+.-
T Consensus 30 r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 30 RKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778899999999999999999999999998753
No 99
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.41 E-value=1.3e+02 Score=25.05 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=14.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 44 QLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQ 76 (545)
Q Consensus 44 eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~l 76 (545)
.+..+...+..+...+..+..++..+...+..+
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444444444333
No 100
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=44.98 E-value=1.6e+02 Score=25.70 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 79 DLDESERKHSMAKNETSEMAKTVESLKFELET 110 (545)
Q Consensus 79 ~leE~k~eL~~~ekEl~slqkelesLkseLe~ 110 (545)
.++.++..|..+++-+..++..+..|+.++..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666777777777777777777766655
No 101
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=42.83 E-value=1.4e+02 Score=24.45 Aligned_cols=51 Identities=29% Similarity=0.214 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 96 EMAKTVESLKFELETVKEEKAQALNNEKLAASSVQNLLEEKHKLINELENS 146 (545)
Q Consensus 96 slqkelesLkseLe~~eeel~el~ekEk~lsseIe~L~eel~kl~~ELE~~ 146 (545)
.+.++|+.|..+...+..-+..+.--...+-..+..|+.+..-+..||..+
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444555555544444333333222222333344444444444444444444
No 102
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.47 E-value=1.4e+02 Score=24.57 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 042557 170 EAREAKEKLLSSQTEHETYEAQIED 194 (545)
Q Consensus 170 E~eeakekl~~~Q~Ele~~r~Eie~ 194 (545)
.+++++.+...+..++..++.+++.
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444333
No 103
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.54 E-value=66 Score=26.03 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 61 ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVE 102 (545)
Q Consensus 61 ~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkele 102 (545)
.|+.-+.....++......+.++...|.....++..++..+.
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444443344444444443333333
No 104
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=41.52 E-value=1.5e+02 Score=24.38 Aligned_cols=24 Identities=21% Similarity=0.086 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 127 SSVQNLLEEKHKLINELENSREEE 150 (545)
Q Consensus 127 seIe~L~eel~kl~~ELE~~~~ee 150 (545)
.++..+.+.+..-..+|-.++..+
T Consensus 48 ~Elk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 48 AEVGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444444444443
No 105
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=41.19 E-value=1.7e+02 Score=24.94 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 042557 259 LEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESF 319 (545)
Q Consensus 259 ~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l 319 (545)
|+.++.+.-+.|+.+|.++..-..=..-|++.|+.-.+.--..+..+.++..++..|+..|
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~L 83 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQEL 83 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666666664433333333344555555555444444
No 106
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=40.92 E-value=70 Score=28.58 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHH
Q 042557 152 KSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIED-LRIVLKATNE 204 (545)
Q Consensus 152 kekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~-Lq~~L~~aE~ 204 (545)
+.+=..+.+.++|.-=...+.+.+.++..+|..+..+=.++.. ++..+..+|.
T Consensus 59 ~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~~~~e~ 112 (130)
T 3cl3_D 59 QLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSER 112 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333445566666665556666777777777777777777766 5555544443
No 107
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=40.66 E-value=55 Score=23.81 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=23.7
Q ss_pred HHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHh
Q 042557 306 GQARAESMKLKESFLDKETELQSVIQENEELRA 338 (545)
Q Consensus 306 ~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~ 338 (545)
.++.+..-.|.....++|.-+..|+.||-.||.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344445556666677778888899999988874
No 108
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=40.52 E-value=78 Score=28.30 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=0.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 042557 40 AVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESER 85 (545)
Q Consensus 40 l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~ 85 (545)
++.++|-.....|..+...-..|+++...++..+..+..++++.++
T Consensus 6 SL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kq 51 (130)
T 3cl3_D 6 GSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQ 51 (130)
T ss_dssp ---------------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4556777778888888888888888888887777777777766443
No 109
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=40.32 E-value=67 Score=24.73 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=34.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 042557 249 VKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKE 293 (545)
Q Consensus 249 iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ 293 (545)
-++++.++..++.-+-.|.......|-.|.....|+++|+..|++
T Consensus 6 ktRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 6 KTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888888888999999888875
No 110
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=39.32 E-value=1.6e+02 Score=28.00 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 36 ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQK 77 (545)
Q Consensus 36 lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le 77 (545)
+-+..++.+...++..|+....+|..|+.++..+...+....
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 446667777788888888888888888888777777664433
No 111
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=38.59 E-value=2.4e+02 Score=25.93 Aligned_cols=33 Identities=18% Similarity=-0.017 Sum_probs=23.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042557 3 ESYARNLVEEWKIRVEELEMQAEEAHKLKRSAS 35 (545)
Q Consensus 3 e~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~ 35 (545)
-++++|-+.-++.+.+.-=.++....-|..++.
T Consensus 13 ~~~~w~Y~~~l~~~a~~~ve~l~~seL~qqL~~ 45 (185)
T 3r2p_A 13 KDLATVYVDVLKDSGRDYVSQFEGSALGKQLNL 45 (185)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHSHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHH
Confidence 356777778888877777777777777777654
No 112
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=38.33 E-value=3e+02 Score=27.08 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 042557 348 EELSSLLEE 356 (545)
Q Consensus 348 ~EL~~ll~e 356 (545)
.++..++..
T Consensus 279 ~Di~~fi~~ 287 (337)
T 2x3v_A 279 EDLRWFRST 287 (337)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555554
No 113
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=37.52 E-value=1.9e+02 Score=24.51 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 79 DLDESERKHSMAKNETSEMAKTVESLKFELETVK 112 (545)
Q Consensus 79 ~leE~k~eL~~~ekEl~slqkelesLkseLe~~e 112 (545)
.++.++..|..+++-+..++..|..|+.++...+
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3556666667777777777777777776665544
No 114
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=36.94 E-value=4.3e+02 Score=28.53 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 042557 180 SSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKH 215 (545)
Q Consensus 180 ~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~ 215 (545)
..|++|..++.++.+.+.+=.++...|+..|.+-..
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a 41 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNA 41 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467777777888888887777777777765555444
No 115
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.83 E-value=84 Score=25.53 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 62 LKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELET 110 (545)
Q Consensus 62 LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~ 110 (545)
+..++..|+..++=++.-|++++..+-.-++.+..++..+.-|..++..
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555554444445555555444444433
No 116
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=36.78 E-value=1.3e+02 Score=22.50 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 042557 252 SEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKE 293 (545)
Q Consensus 252 ~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ 293 (545)
++..+..++.-+..|......-+..|.-...|++.|+..|++
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777888888877764
No 117
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=36.69 E-value=1.7e+02 Score=23.64 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 042557 51 KLHDAESEIAALKEKVG 67 (545)
Q Consensus 51 ~LeeaesEI~~LqeKve 67 (545)
.|+.+......|..++.
T Consensus 8 kLq~~E~~N~~Le~~v~ 24 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLS 24 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33344444444444333
No 118
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=36.47 E-value=4e+02 Score=28.01 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 042557 285 AQLRDSL 291 (545)
Q Consensus 285 ~~lr~~L 291 (545)
..|+..|
T Consensus 242 ~~lK~~L 248 (486)
T 3haj_A 242 RFFREVL 248 (486)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 119
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=35.94 E-value=4.5e+02 Score=28.40 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=26.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 042557 47 GNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAK 99 (545)
Q Consensus 47 ~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqk 99 (545)
.++.-|.+++++|..+..-+.++...+.....++..+...+..+.++...+..
T Consensus 353 ~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n 405 (602)
T 1cii_A 353 KLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRN 405 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333555555555555555555555555555554444444444444444333
No 120
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=35.53 E-value=2.2e+02 Score=25.28 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 042557 53 HDAESEIAALKEKVGLLEMTIGRQK 77 (545)
Q Consensus 53 eeaesEI~~LqeKve~LE~ev~~le 77 (545)
.+++..|..|+.+|..++.++..++
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554443
No 121
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=34.80 E-value=1.6e+02 Score=24.76 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHHH
Q 042557 255 ENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETEL 326 (545)
Q Consensus 255 e~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~eL 326 (545)
.+.+++..+..|-.+++++|.+.. .+...++..+-..++++..+...+.---.+...|-+.++.+|.++
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EI 81 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLA---KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEI 81 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555544322 234444444444444444444333333333344444444444443
No 122
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=34.13 E-value=2.1e+02 Score=26.07 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 52 LHDAESEIAALKEKVGLLEMTI-----GRQKADLDESERKHSMAKNETSEMAKTVESLKFELETV 111 (545)
Q Consensus 52 LeeaesEI~~LqeKve~LE~ev-----~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~ 111 (545)
+..+..+...|......++... ..|...+..+++.+.............+..+..++..+
T Consensus 35 ~~~le~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~L 99 (146)
T 2xnx_M 35 ALEKELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQL 99 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Confidence 3344455555555555444433 23444445555555555554444444444444444333
No 123
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=34.06 E-value=1.3e+02 Score=23.57 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=9.3
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 042557 271 KETEEDACATKEEEAQLR 288 (545)
Q Consensus 271 ~~~E~~~~~~~~E~~~lr 288 (545)
+...++++.+..||..||
T Consensus 44 r~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 44 RKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhc
Confidence 333444445556666655
No 124
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=33.03 E-value=9.7 Score=29.52 Aligned_cols=15 Identities=7% Similarity=0.284 Sum_probs=12.8
Q ss_pred hhcchhHHhhhhhhc
Q 042557 523 KKKKPFIRKFGSLLK 537 (545)
Q Consensus 523 kkkk~ll~kfg~llk 537 (545)
|.++.||++|||+=+
T Consensus 15 kr~~~LL~~Fgs~~~ 29 (63)
T 2a1j_A 15 KNCRSLMHHVKNIAE 29 (63)
T ss_dssp HHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHcCCHHH
Confidence 678899999999854
No 125
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=32.53 E-value=1.1e+02 Score=30.11 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042557 256 NSSLEKEINRLVNLLKET 273 (545)
Q Consensus 256 ~~~~~~e~~~l~e~l~~~ 273 (545)
+..++.++..+...+..+
T Consensus 130 l~~~~a~l~~a~a~l~~a 147 (341)
T 3fpp_A 130 IGTIDAQIKRNQASLDTA 147 (341)
T ss_dssp HHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 126
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=32.48 E-value=2e+02 Score=23.30 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 042557 58 EIAALKEKVGLLEMTIGRQKADL 80 (545)
Q Consensus 58 EI~~LqeKve~LE~ev~~le~~l 80 (545)
++..++.+..+|+..+...+..+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~ 24 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENF 24 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566665555555444
No 127
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=32.07 E-value=2.3e+02 Score=29.92 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q 042557 4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLD 39 (545)
Q Consensus 4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~ 39 (545)
.-|+.-|.+.+..|..+.+.-..|..|-.....+..
T Consensus 34 ~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~ 69 (411)
T 3ghg_C 34 TKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYN 69 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 345555666666666666666666666555554433
No 128
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=30.87 E-value=4.3e+02 Score=28.28 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhhhhhhHHHHHHHHH
Q 042557 4 SYARNLVEEWKIRVEELEMQAEEAHKLKRSASESLDAVMRQLEGNNDKLHDAESEIA 60 (545)
Q Consensus 4 ~RV~DLl~Evkkql~sLE~QAeKA~ky~elk~lSL~l~t~eLE~lk~~LeeaesEI~ 60 (545)
.-|+.-|.+++..|..|.+.-..|..|-.....|....+.+.-....-..+..+.+.
T Consensus 91 ~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle 147 (461)
T 3ghg_B 91 RPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELE 147 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHH
Confidence 346667777777777777777777777777777776666666654333333333333
No 129
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.17 E-value=4.9e+02 Score=28.50 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 164 LHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 164 L~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
|.+.+.++.+.+.+...++.+...+......++..++.-+..|+
T Consensus 482 l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 525 (592)
T 1f5n_A 482 LTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQ 525 (592)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555655666666666666666666666666
No 130
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.08 E-value=1.6e+02 Score=21.45 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=13.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH
Q 042557 271 KETEEDACATKEEEAQLRDSLK 292 (545)
Q Consensus 271 ~~~E~~~~~~~~E~~~lr~~Lk 292 (545)
...|.++..+..||.-||-.|+
T Consensus 20 aeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 20 SELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHhc
Confidence 3344555577777777777664
No 131
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.22 E-value=1.3e+02 Score=31.52 Aligned_cols=8 Identities=50% Similarity=0.472 Sum_probs=4.4
Q ss_pred cccccccc
Q 042557 373 EKDYDLLP 380 (545)
Q Consensus 373 ~~~~~~~~ 380 (545)
+.-||+|.
T Consensus 199 E~i~DLL~ 206 (403)
T 4etp_A 199 ENIVDLLR 206 (403)
T ss_dssp TEEEETTC
T ss_pred ceeeEccC
Confidence 44556663
No 132
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=28.85 E-value=5.7e+02 Score=27.44 Aligned_cols=14 Identities=0% Similarity=0.126 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHH
Q 042557 5 YARNLVEEWKIRVE 18 (545)
Q Consensus 5 RV~DLl~Evkkql~ 18 (545)
|+.++|.+|++.+.
T Consensus 51 rLqglL~kqerdv~ 64 (491)
T 1m1j_A 51 RMQGIIDDTDQNYS 64 (491)
T ss_dssp THHHHHHHHHHHHH
T ss_pred chhhHHHHhhhhHH
Confidence 56677777766443
No 133
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=28.74 E-value=1.8e+02 Score=24.38 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 56 ESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 56 esEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
.++|..|+.+...|+..+..++..+.. ++..++..|..|..++..+..+
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~~----------e~~~~q~~i~~lE~eL~~~r~e 59 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLAK----------EKDNSRRMLTDKEREMAEIRDQ 59 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555543322 2334444444444444444444
No 134
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=28.36 E-value=2.1e+02 Score=22.30 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHH
Q 042557 303 ETLGQARAESMKLKESFLDKETELQSVIQENEELR 337 (545)
Q Consensus 303 e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr 337 (545)
.++..+---|.+|.+-++-+-..|+.++.||-.||
T Consensus 27 AkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 27 AKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 34445555577788888888888888888888887
No 135
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=28.16 E-value=15 Score=24.16 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=13.1
Q ss_pred chhHHhhhhhhccccc
Q 042557 526 KPFIRKFGSLLKKKQA 541 (545)
Q Consensus 526 k~ll~kfg~llkkk~~ 541 (545)
|.-|+|||+-||+|..
T Consensus 8 keklKkf~~~lk~k~~ 23 (26)
T 2pco_A 8 RRKLKKLRNALKKKLK 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4569999999999854
No 136
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=27.13 E-value=4.1e+02 Score=25.27 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 042557 61 ALKEKVGLLEMTIGR 75 (545)
Q Consensus 61 ~LqeKve~LE~ev~~ 75 (545)
.++.++..|..++.+
T Consensus 136 ~~~~~~~~L~~e~~~ 150 (213)
T 1ik9_A 136 ENQAKNEHLQKENER 150 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 137
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=27.12 E-value=2.2e+02 Score=23.36 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=18.7
Q ss_pred hhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 242 ELHLVDCVKKSEEENSSLEKEINRLVNLLKETEED 276 (545)
Q Consensus 242 E~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~ 276 (545)
+..|-.+|....+++..++.++..|.+.+..+...
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~l 70 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYM 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666665555555444333
No 138
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.95 E-value=2e+02 Score=21.75 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 61 ALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVE 102 (545)
Q Consensus 61 ~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkele 102 (545)
.|-.+++.|.++..-+..++.+-...|...+-+.+.|..-+-
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 344455555555555666666655566655555555554443
No 139
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.92 E-value=1.1e+02 Score=26.53 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=21.1
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 042557 37 SLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEM 71 (545)
Q Consensus 37 SL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ 71 (545)
|+..++.++...+..+..++.++..|+..+..+++
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEk 39 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEI 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666655555555544
No 140
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=26.15 E-value=1.4e+02 Score=29.72 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 042557 189 EAQIEDLRIVLKA 201 (545)
Q Consensus 189 r~Eie~Lq~~L~~ 201 (545)
+.++..+++.|..
T Consensus 76 ~a~l~~~~a~l~~ 88 (369)
T 4dk0_A 76 KAALASYQAQLVA 88 (369)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 141
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.86 E-value=2.8e+02 Score=22.92 Aligned_cols=54 Identities=19% Similarity=0.093 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 042557 36 ESLDAVMRQLEGNNDKLHDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSM 89 (545)
Q Consensus 36 lSL~l~t~eLE~lk~~LeeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~ 89 (545)
-|-.|-..-=+.-+..|.++-.+...|...+..++.+++.++..+++++.-...
T Consensus 25 Pse~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 25 PSSQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566677888888888888888888888888888777776544443
No 142
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.60 E-value=2.8e+02 Score=26.55 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhHHHhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Q 042557 302 QETLGQARAESMKLKESFLDKETELQSVIQENEELRAREADSVKKVEELSSLLEEA 357 (545)
Q Consensus 302 ~e~~~ea~~e~~~Lk~~l~dkE~eLq~i~~Ene~Lr~~Ea~a~~~i~EL~~ll~ea 357 (545)
+.+|.++=.+|..|...+-.++.++..+..+|+.||.-=..++ -|..++...
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q----~la~vi~~l 158 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ----YMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3567777789999999999999999999999999986443333 344444444
No 143
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=24.84 E-value=1.3e+02 Score=26.05 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=39.9
Q ss_pred HHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 042557 237 EWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATK 281 (545)
Q Consensus 237 ~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~ 281 (545)
.++=-|+|+.++||..+--+.++-.+++-+...+..+|..++++.
T Consensus 40 GsTVEERGl~nsVk~~et~i~~~t~~v~t~k~~i~~~e~~vqalq 84 (113)
T 1aa0_A 40 GSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQ 84 (113)
T ss_dssp CSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeccccchhhhccccchhhhheeecccccchhhhhhhhHHHH
Confidence 455569999999999999999999999999999998888888775
No 144
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.76 E-value=2.9e+02 Score=22.58 Aligned_cols=32 Identities=6% Similarity=0.168 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 042557 165 HEVSVEAREAKEKLLSSQTEHETYEAQIEDLR 196 (545)
Q Consensus 165 ~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq 196 (545)
..++...+.+...+..+...+..++.++..++
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 145
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.53 E-value=6.8e+02 Score=26.87 Aligned_cols=29 Identities=7% Similarity=0.174 Sum_probs=18.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 176 EKLLSSQTEHETYEAQIEDLRIVLKATNEK 205 (545)
Q Consensus 176 ekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k 205 (545)
..+..+|.-+++++.+|.+|...+ .+..+
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI-~~q~~ 160 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDI-DIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 445556666777777777877777 44433
No 146
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.33 E-value=2.2e+02 Score=21.35 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=0.0
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 042557 247 DCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQL 287 (545)
Q Consensus 247 ~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~l 287 (545)
..+..+..++..+-..|.+|.+.|..+-.++..++++.+.|
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 147
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=23.23 E-value=3.5e+02 Score=23.07 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 126 ASSVQNLLEEKHKLINELENSREEEEKSKKAMESLASALHEV 167 (545)
Q Consensus 126 sseIe~L~eel~kl~~ELE~~~~eeEkekka~EeLa~AL~E~ 167 (545)
...+..+..++.....+|..++..++.....-..|...+.++
T Consensus 53 ~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l 94 (107)
T 2no2_A 53 LEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAEL 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333333333344444333
No 148
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.07 E-value=3.1e+02 Score=22.38 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=17.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 75 RQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKEE 114 (545)
Q Consensus 75 ~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~eee 114 (545)
.|-++++++..+-.....++.+++.....+...+..++++
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555444443
No 149
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=22.35 E-value=1.4e+02 Score=25.21 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=28.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 042557 174 AKEKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHEIGLLTNIIKE 226 (545)
Q Consensus 174 akekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e~~~lkk~~E~ 226 (545)
-.-++..-=.|++.+|.-+-+|..+=.....+|+ .||.+|+..|+.
T Consensus 41 yE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YE-------eEI~rLr~eLe~ 86 (92)
T 3vp9_A 41 YDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYE-------EEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3334444445566666666666666666666666 788888877654
No 150
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.34 E-value=7.3e+02 Score=26.47 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042557 148 EEEEKSKKAMESLASALHEVSVEAREAKEKLLSSQTEHETYEAQIEDLRIVLKA 201 (545)
Q Consensus 148 ~eeEkekka~EeLa~AL~E~e~E~eeakekl~~~Q~Ele~~r~Eie~Lq~~L~~ 201 (545)
.....+++.+++|...|..++.....+..-+..++..+...+.++..+...+..
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~ 146 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSE 146 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 334445555555555555555555555555555555555555555555444433
No 151
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.27 E-value=2.7e+02 Score=21.39 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=4.7
Q ss_pred HHHHHHHhHH
Q 042557 26 EAHKLKRSAS 35 (545)
Q Consensus 26 KA~ky~elk~ 35 (545)
.|.+|+..+-
T Consensus 13 AA~R~R~KKk 22 (63)
T 1ci6_A 13 AATRYRQKKR 22 (63)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455554443
No 152
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.67 E-value=7.2e+02 Score=26.14 Aligned_cols=30 Identities=33% Similarity=0.280 Sum_probs=21.7
Q ss_pred hHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 042557 244 HLVDCVKKSEEENSSLEKEINRLVNLLKET 273 (545)
Q Consensus 244 ~~~~~iK~~eee~~~~~~e~~~l~e~l~~~ 273 (545)
++++.|..+.++...++.+++.|+......
T Consensus 28 ~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~ 57 (455)
T 2dq0_A 28 KWVDEILKLDTEWRTKLKEINRLRHERNKI 57 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777788888888888877777766633
No 153
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=21.45 E-value=7.9e+02 Score=26.52 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=5.7
Q ss_pred cccccCCCccc
Q 042557 494 NFGRINGLSSS 504 (545)
Q Consensus 494 ~~~~~~~~~~~ 504 (545)
.|-++||-||+
T Consensus 329 ~fV~InGSSV~ 339 (497)
T 3iox_A 329 KFVKISGSSIG 339 (497)
T ss_dssp EEECBTTCSEE
T ss_pred cEEEecCCeEE
Confidence 44555555544
No 154
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.25 E-value=3.8e+02 Score=22.80 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhHHHhHHhhH
Q 042557 300 YMQETLGQARAESMKLKESFLDKE 323 (545)
Q Consensus 300 ea~e~~~ea~~e~~~Lk~~l~dkE 323 (545)
.+...++-+++++.+|+..+..+|
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666777777777666554
No 155
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=21.25 E-value=3.6e+02 Score=22.45 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 53 HDAESEIAALKEKVGLLEMTIGRQKADLDESERKHSMAKNETSEMAKTVESLKFELETVKE 113 (545)
Q Consensus 53 eeaesEI~~LqeKve~LE~ev~~le~~leE~k~eL~~~ekEl~slqkelesLkseLe~~ee 113 (545)
.++..-++.|...+..|...|...+.. ...++.....-|..++.+|..++.
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~i~e~~----------~~~EI~~Rk~~v~~l~~~i~~lk~ 89 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSIIVMKRD----------ENEDVSGREAQVKNIKQQLDALKL 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS----------TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555544443332 333444455555555555544443
No 156
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.00 E-value=2.6e+02 Score=21.24 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042557 216 EIGLLTNIIKEAKDESKISKAEWEQKELHLVDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSL 291 (545)
Q Consensus 216 e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~L 291 (545)
+..+.++.+ +..-|..+-.+ .|..++..+..+..++..|...+. .+..|+..|+..|
T Consensus 3 errr~rNr~---------AA~k~R~rKk~---~~~~Le~~v~~L~~~n~~L~~~v~-------~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 3 ERKRMRNRI---------AASKSRKRKLE---RIARLEEKVKTLKAQNSELASTAN-------MLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHTTC---
T ss_pred HHHHHHhHH---------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
No 157
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.81 E-value=2.9e+02 Score=22.59 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 042557 261 KEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYM 301 (545)
Q Consensus 261 ~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea 301 (545)
.++.+|-..+.....++..+++||..|...+.++..-+.+.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl 74 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555577777777777776665554443
No 158
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.62 E-value=7.5e+02 Score=25.90 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 042557 167 VSVEAREAKEKLLSSQTEHETYEAQIEDL 195 (545)
Q Consensus 167 ~e~E~eeakekl~~~Q~Ele~~r~Eie~L 195 (545)
....++.++..+...+..++.++..+..|
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 159
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.45 E-value=1.5e+02 Score=22.39 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042557 52 LHDAESEIAALKEKVGLLEM 71 (545)
Q Consensus 52 LeeaesEI~~LqeKve~LE~ 71 (545)
++.+..+.+.|+.++..|..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333333
No 160
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=20.43 E-value=23 Score=29.23 Aligned_cols=15 Identities=7% Similarity=0.284 Sum_probs=12.6
Q ss_pred hhcchhHHhhhhhhc
Q 042557 523 KKKKPFIRKFGSLLK 537 (545)
Q Consensus 523 kkkk~ll~kfg~llk 537 (545)
|.++.||++|||+-.
T Consensus 29 kr~~~LL~~FgSl~~ 43 (84)
T 1z00_B 29 KNCRSLMHHVKNIAE 43 (84)
T ss_dssp HHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHcCCHHH
Confidence 577899999999854
No 161
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.18 E-value=3.1e+02 Score=21.36 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042557 91 KNETSEMAKTVESLKFELE 109 (545)
Q Consensus 91 ekEl~slqkelesLkseLe 109 (545)
..++..++..|.+|..+|.
T Consensus 55 k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
Done!