Query 042557
Match_columns 545
No_of_seqs 134 out of 143
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 12:33:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042557.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042557hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 37.7 84 0.0061 24.3 19.0 22 56-77 21-42 (185)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 37.7 85 0.0062 24.4 12.7 24 184-207 80-103 (107)
3 d2efla1 a.238.1.4 (A:1-288) Fo 37.5 1.2E+02 0.0088 26.1 27.5 35 182-216 166-200 (288)
4 d1i4da_ a.238.1.2 (A:) Arfapti 28.6 1.4E+02 0.01 24.2 23.3 30 210-239 140-169 (200)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 28.1 1.3E+02 0.0097 23.7 13.4 29 52-80 3-31 (133)
6 d1gqea_ e.38.1.1 (A:) Polypept 18.8 3.6E+02 0.026 25.3 12.9 20 12-31 3-22 (362)
7 d1seta1 a.2.7.1 (A:1-110) Sery 17.8 2E+02 0.015 22.0 11.9 70 246-335 27-96 (110)
8 d1seta1 a.2.7.1 (A:1-110) Sery 14.0 2.5E+02 0.018 21.3 11.7 24 87-110 30-53 (110)
9 d2a1ja1 a.60.2.5 (A:837-898) D 12.6 22 0.0016 25.4 0.2 14 522-535 13-26 (62)
10 d1s35a1 a.7.1.1 (A:1063-1168) 12.3 2.5E+02 0.018 20.3 9.3 74 176-249 32-106 (106)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=37.71 E-value=84 Score=24.27 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 042557 56 ESEIAALKEKVGLLEMTIGRQK 77 (545)
Q Consensus 56 esEI~~LqeKve~LE~ev~~le 77 (545)
...+..+..++..+...+..+.
T Consensus 21 ~~~~~~~~~k~~~~e~~~~~~~ 42 (185)
T d2ap3a1 21 EEPIKTVGKKIAELDEKKKKLT 42 (185)
T ss_dssp THHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=37.70 E-value=85 Score=24.36 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 184 EHETYEAQIEDLRIVLKATNEKYE 207 (545)
Q Consensus 184 Ele~~r~Eie~Lq~~L~~aE~k~~ 207 (545)
++..+...+..+...+.....+|+
T Consensus 80 ~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 80 REKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 3
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.54 E-value=1.2e+02 Score=26.09 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 042557 182 QTEHETYEAQIEDLRIVLKATNEKYESMLDDAKHE 216 (545)
Q Consensus 182 Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~e 216 (545)
..+++.++.........+..|...|+..+..++..
T Consensus 166 ~~~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~ 200 (288)
T d2efla1 166 KADVEKARQQAQIRHQMAEDSKADYSSILQKFNHE 200 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666555555443
No 4
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.56 E-value=1.4e+02 Score=24.17 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=14.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 042557 210 LDDAKHEIGLLTNIIKEAKDESKISKAEWE 239 (545)
Q Consensus 210 l~ea~~e~~~lkk~~E~~~~E~e~s~~~~~ 239 (545)
+.+|..+....+..++++..++-.-+..+.
T Consensus 140 l~~ae~~~~~a~~~fe~~~~~~~~~l~~l~ 169 (200)
T d1i4da_ 140 LESAQATFQAHRDKYEKLRGDVAIKLKFLE 169 (200)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555554433
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=28.12 E-value=1.3e+02 Score=23.67 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 042557 52 LHDAESEIAALKEKVGLLEMTIGRQKADL 80 (545)
Q Consensus 52 LeeaesEI~~LqeKve~LE~ev~~le~~l 80 (545)
|+++..++..++..+..|..++..|...+
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~ 31 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATI 31 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444443
No 6
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=18.79 E-value=3.6e+02 Score=25.26 Aligned_cols=20 Identities=10% Similarity=0.146 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042557 12 EWKIRVEELEMQAEEAHKLK 31 (545)
Q Consensus 12 Evkkql~sLE~QAeKA~ky~ 31 (545)
+++.++..|...++....|.
T Consensus 3 ~l~~~i~eL~~rl~~Lr~~f 22 (362)
T d1gqea_ 3 PVNNRIQDLTERSDVLRGYL 22 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHc
Confidence 45556666665555555443
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=17.85 E-value=2e+02 Score=21.95 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=38.7
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHhhHHH
Q 042557 246 VDCVKKSEEENSSLEKEINRLVNLLKETEEDACATKEEEAQLRDSLKEVEAEVIYMQETLGQARAESMKLKESFLDKETE 325 (545)
Q Consensus 246 ~~~iK~~eee~~~~~~e~~~l~e~l~~~E~~~~~~~~E~~~lr~~Lk~ae~e~~ea~e~~~ea~~e~~~Lk~~l~dkE~e 325 (545)
++.|-.+..+...++.+++.|+......-.+...... +....+..+...|++.+..+|..
T Consensus 27 ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~--------------------~~~~~l~~~~k~lk~~i~~le~~ 86 (110)
T d1seta1 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPP--------------------EEKEALIARGKALGEEAKRLEEA 86 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCH--------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------cchHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777887777777776644333321111 11122344445555556566666
Q ss_pred HHHHHHHHHH
Q 042557 326 LQSVIQENEE 335 (545)
Q Consensus 326 Lq~i~~Ene~ 335 (545)
+..+..+...
T Consensus 87 ~~~~~~~l~~ 96 (110)
T d1seta1 87 LREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555555544
No 8
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=13.99 E-value=2.5e+02 Score=21.31 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042557 87 HSMAKNETSEMAKTVESLKFELET 110 (545)
Q Consensus 87 L~~~ekEl~slqkelesLkseLe~ 110 (545)
+.....+.+.++..++.|+++...
T Consensus 30 i~~ld~~rr~l~~~~e~l~~~rN~ 53 (110)
T d1seta1 30 LLALDREVQELKKRLQEVQTERNQ 53 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 9
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.58 E-value=22 Score=25.40 Aligned_cols=14 Identities=7% Similarity=0.299 Sum_probs=0.0
Q ss_pred hhhcchhHHhhhhh
Q 042557 522 QKKKKPFIRKFGSL 535 (545)
Q Consensus 522 ~kkkk~ll~kfg~l 535 (545)
.|..+.||++|||+
T Consensus 13 ~~~~~~Ll~~f~Si 26 (62)
T d2a1ja1 13 AKNCRSLMHHVKNI 26 (62)
T ss_dssp HHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHhccH
No 10
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.25 E-value=2.5e+02 Score=20.26 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH-HHHHHHHHHHHHHhHhHHHHHHHHhhhhhHHHhh
Q 042557 176 EKLLSSQTEHETYEAQIEDLRIVLKATNEKYESMLDDAKH-EIGLLTNIIKEAKDESKISKAEWEQKELHLVDCV 249 (545)
Q Consensus 176 ekl~~~Q~Ele~~r~Eie~Lq~~L~~aE~k~~~~l~ea~~-e~~~lkk~~E~~~~E~e~s~~~~~~kE~~~~~~i 249 (545)
..+.........+..++..-+..+.......+.++..... +...++..+..+...+..-.+.|..|-.-|..|.
T Consensus 32 ~~~~~~l~~h~~l~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~I~~~l~~L~~~w~~L~~~~~~R~~~Le~aL 106 (106)
T d1s35a1 32 PEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCL 106 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Done!