Query 042559
Match_columns 547
No_of_seqs 551 out of 2807
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:21:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 1E-44 2.2E-49 358.4 9.3 394 50-473 3-462 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 4.7E-27 1E-31 223.9 11.4 290 122-450 98-389 (419)
3 KOG4341 F-box protein containi 99.9 4.6E-22 9.9E-27 198.0 8.2 289 120-453 164-457 (483)
4 KOG2120 SCF ubiquitin ligase, 99.4 2.4E-13 5.1E-18 130.7 7.0 191 188-406 185-376 (419)
5 cd00116 LRR_RI Leucine-rich re 99.4 1.6E-11 3.5E-16 125.2 18.6 170 258-435 82-261 (319)
6 KOG1947 Leucine rich repeat pr 99.4 1.2E-12 2.6E-17 141.0 9.5 249 175-456 176-435 (482)
7 KOG1947 Leucine rich repeat pr 99.3 1.4E-12 3.1E-17 140.4 6.7 188 258-451 189-390 (482)
8 cd00116 LRR_RI Leucine-rich re 99.2 9.6E-11 2.1E-15 119.4 14.6 173 258-439 109-293 (319)
9 PLN00113 leucine-rich repeat r 99.2 1.4E-10 3E-15 136.3 13.3 129 257-403 140-270 (968)
10 PLN00113 leucine-rich repeat r 99.1 3.3E-10 7.1E-15 133.1 14.1 222 188-456 69-292 (968)
11 PF12937 F-box-like: F-box-lik 99.1 1.8E-11 4E-16 87.7 1.9 46 122-167 1-46 (47)
12 KOG1909 Ran GTPase-activating 99.0 1.6E-09 3.5E-14 106.9 9.4 193 258-458 93-308 (382)
13 PLN03210 Resistant to P. syrin 98.8 3.3E-08 7.1E-13 117.6 11.3 63 339-407 777-839 (1153)
14 KOG3207 Beta-tubulin folding c 98.7 6.6E-09 1.4E-13 105.3 3.6 112 258-376 122-233 (505)
15 KOG1909 Ran GTPase-activating 98.7 2E-07 4.2E-12 92.4 11.9 129 301-436 177-310 (382)
16 PLN03210 Resistant to P. syrin 98.7 5.5E-08 1.2E-12 115.8 9.7 157 256-439 656-840 (1153)
17 KOG3207 Beta-tubulin folding c 98.7 4.3E-09 9.2E-14 106.6 0.1 203 258-473 147-355 (505)
18 smart00256 FBOX A Receptor for 98.5 9.4E-08 2E-12 66.0 3.8 40 125-164 1-40 (41)
19 KOG3665 ZYG-1-like serine/thre 98.4 3.5E-07 7.6E-12 101.9 5.7 45 335-380 143-187 (699)
20 KOG4194 Membrane glycoprotein 98.4 1.2E-07 2.5E-12 99.3 1.8 205 257-496 125-334 (873)
21 PF00646 F-box: F-box domain; 98.3 4.9E-08 1.1E-12 70.1 -2.1 43 122-164 3-45 (48)
22 KOG4194 Membrane glycoprotein 98.2 8.2E-07 1.8E-11 93.2 2.6 61 422-490 363-427 (873)
23 PF14580 LRR_9: Leucine-rich r 98.2 3.9E-07 8.4E-12 84.2 0.2 106 282-404 18-124 (175)
24 KOG3665 ZYG-1-like serine/thre 98.2 5.1E-06 1.1E-10 92.7 8.8 147 258-416 123-272 (699)
25 PF14580 LRR_9: Leucine-rich r 98.0 4E-07 8.6E-12 84.1 -3.5 106 258-379 20-126 (175)
26 KOG0444 Cytoskeletal regulator 98.0 3.3E-07 7.1E-12 96.6 -5.3 67 423-497 290-357 (1255)
27 KOG0618 Serine/threonine phosp 97.9 1.1E-05 2.3E-10 89.3 4.8 39 252-293 236-274 (1081)
28 COG5238 RNA1 Ran GTPase-activa 97.7 0.00021 4.6E-09 69.0 10.3 71 365-439 185-257 (388)
29 COG5238 RNA1 Ran GTPase-activa 97.7 0.00019 4.1E-09 69.3 9.8 178 257-439 92-287 (388)
30 KOG3864 Uncharacterized conser 97.7 2E-05 4.3E-10 72.9 3.1 87 342-437 103-189 (221)
31 KOG2982 Uncharacterized conser 97.7 5.8E-05 1.3E-09 73.6 5.0 109 260-375 48-156 (418)
32 KOG0444 Cytoskeletal regulator 97.6 4.9E-06 1.1E-10 88.0 -2.8 140 335-496 240-379 (1255)
33 KOG3864 Uncharacterized conser 97.5 7.8E-05 1.7E-09 69.0 3.6 69 340-411 125-194 (221)
34 PRK15387 E3 ubiquitin-protein 97.4 7.6E-05 1.6E-09 84.0 3.3 21 470-490 436-456 (788)
35 PRK15387 E3 ubiquitin-protein 97.3 0.00018 3.9E-09 81.1 4.4 112 256-403 241-352 (788)
36 KOG0618 Serine/threonine phosp 97.3 5.4E-05 1.2E-09 83.9 -0.2 128 257-405 359-488 (1081)
37 KOG0281 Beta-TrCP (transducin 97.3 0.00032 6.9E-09 69.3 5.0 50 120-169 73-126 (499)
38 KOG2997 F-box protein FBX9 [Ge 97.3 0.00014 3E-09 71.3 2.3 46 122-167 107-157 (366)
39 KOG1259 Nischarin, modulator o 97.0 0.00029 6.2E-09 68.9 1.5 128 283-438 284-413 (490)
40 PRK15370 E3 ubiquitin-protein 97.0 0.00064 1.4E-08 76.9 4.1 83 394-499 326-408 (754)
41 KOG2982 Uncharacterized conser 96.9 0.0024 5.3E-08 62.6 6.8 94 237-350 63-156 (418)
42 KOG4308 LRR-containing protein 96.8 0.00021 4.6E-09 76.6 -1.0 97 339-439 203-305 (478)
43 PRK15370 E3 ubiquitin-protein 96.8 0.00067 1.4E-08 76.8 2.7 61 365-443 325-385 (754)
44 PF13855 LRR_8: Leucine rich r 96.8 0.00031 6.7E-09 52.9 -0.2 59 309-375 1-59 (61)
45 KOG1259 Nischarin, modulator o 96.8 0.00048 1E-08 67.4 1.0 126 256-404 283-410 (490)
46 smart00367 LRR_CC Leucine-rich 96.7 0.0019 4.1E-08 39.6 3.0 25 364-388 1-25 (26)
47 KOG1859 Leucine-rich repeat pr 96.3 0.00026 5.5E-09 76.7 -4.4 21 258-278 110-130 (1096)
48 PF13855 LRR_8: Leucine rich r 96.3 0.00023 4.9E-09 53.7 -3.7 38 340-379 1-38 (61)
49 PLN03150 hypothetical protein; 96.3 0.006 1.3E-07 68.2 5.8 111 311-439 420-530 (623)
50 PLN03150 hypothetical protein; 96.2 0.0078 1.7E-07 67.3 6.6 106 285-405 420-527 (623)
51 smart00367 LRR_CC Leucine-rich 96.1 0.0049 1.1E-07 37.7 2.4 24 282-305 1-24 (26)
52 KOG4237 Extracellular matrix p 96.0 0.0035 7.6E-08 63.7 2.1 34 420-453 318-351 (498)
53 KOG2739 Leucine-rich acidic nu 95.9 0.0023 5E-08 61.8 0.4 62 339-404 64-127 (260)
54 KOG1859 Leucine-rich repeat pr 95.8 0.00038 8.3E-09 75.4 -5.7 84 337-437 184-267 (1096)
55 KOG2739 Leucine-rich acidic nu 95.7 0.0015 3.2E-08 63.0 -1.6 85 281-375 41-126 (260)
56 KOG2123 Uncharacterized conser 95.5 0.0039 8.4E-08 60.7 0.2 105 309-430 19-123 (388)
57 PF12799 LRR_4: Leucine Rich r 95.5 0.011 2.4E-07 41.3 2.4 36 341-379 2-37 (44)
58 KOG4658 Apoptotic ATPase [Sign 95.5 0.017 3.6E-07 66.8 5.2 25 423-447 769-793 (889)
59 KOG0472 Leucine-rich repeat pr 95.3 0.00014 3.1E-09 73.6 -10.5 69 421-499 249-317 (565)
60 KOG2123 Uncharacterized conser 95.3 0.0035 7.7E-08 60.9 -0.9 117 282-417 18-138 (388)
61 KOG4308 LRR-containing protein 95.2 0.005 1.1E-07 66.1 -0.0 172 258-438 145-332 (478)
62 KOG0274 Cdc4 and related F-box 95.2 0.023 5E-07 62.0 4.9 44 120-163 106-149 (537)
63 PRK15386 type III secretion pr 94.9 0.041 8.9E-07 57.5 5.6 135 258-434 53-187 (426)
64 KOG0617 Ras suppressor protein 94.9 0.00093 2E-08 60.4 -5.7 125 258-402 57-182 (264)
65 KOG0617 Ras suppressor protein 94.8 0.0011 2.4E-08 60.0 -5.5 160 309-498 33-192 (264)
66 KOG1644 U2-associated snRNP A' 94.7 0.021 4.5E-07 53.3 2.6 107 283-402 42-149 (233)
67 KOG0531 Protein phosphatase 1, 94.3 0.011 2.5E-07 62.7 -0.2 103 257-376 95-197 (414)
68 KOG4658 Apoptotic ATPase [Sign 94.1 0.072 1.6E-06 61.7 5.6 18 422-439 715-732 (889)
69 PRK15386 type III secretion pr 93.9 0.063 1.4E-06 56.2 4.2 120 280-438 49-170 (426)
70 PF12799 LRR_4: Leucine Rich r 93.8 0.077 1.7E-06 37.0 3.4 37 309-353 1-37 (44)
71 PF13516 LRR_6: Leucine Rich r 93.8 0.04 8.6E-07 32.9 1.5 22 365-387 2-23 (24)
72 PF13516 LRR_6: Leucine Rich r 93.7 0.042 9.2E-07 32.8 1.6 23 339-361 1-23 (24)
73 PLN03215 ascorbic acid mannose 92.8 0.086 1.9E-06 54.4 3.2 37 121-157 3-40 (373)
74 COG4886 Leucine-rich repeat (L 92.1 0.08 1.7E-06 55.7 2.1 15 306-320 160-174 (394)
75 KOG0472 Leucine-rich repeat pr 91.0 0.18 3.8E-06 51.9 3.0 40 334-375 429-468 (565)
76 COG4886 Leucine-rich repeat (L 90.6 0.14 2.9E-06 54.0 1.9 151 258-439 141-292 (394)
77 smart00368 LRR_RI Leucine rich 88.4 0.55 1.2E-05 29.1 2.7 23 340-362 2-24 (28)
78 KOG4237 Extracellular matrix p 88.0 0.22 4.8E-06 51.1 1.1 87 306-404 271-357 (498)
79 KOG1644 U2-associated snRNP A' 87.8 0.27 5.9E-06 46.1 1.5 108 308-433 41-149 (233)
80 PF13013 F-box-like_2: F-box-l 87.7 0.54 1.2E-05 39.7 3.1 30 121-150 21-50 (109)
81 KOG3763 mRNA export factor TAP 87.5 0.31 6.8E-06 52.0 1.9 91 256-346 217-307 (585)
82 KOG0532 Leucine-rich repeat (L 84.8 0.13 2.8E-06 55.1 -2.5 130 281-439 119-249 (722)
83 KOG3763 mRNA export factor TAP 83.2 1.5 3.3E-05 47.1 4.5 67 336-406 214-283 (585)
84 smart00368 LRR_RI Leucine rich 83.1 1.5 3.2E-05 27.2 2.8 23 365-388 2-24 (28)
85 KOG0531 Protein phosphatase 1, 80.9 0.56 1.2E-05 49.8 0.4 107 280-405 92-198 (414)
86 PF00560 LRR_1: Leucine Rich R 80.7 0.82 1.8E-05 26.5 0.9 19 425-444 1-19 (22)
87 KOG4579 Leucine-rich repeat (L 79.8 0.78 1.7E-05 40.5 0.8 39 335-375 72-110 (177)
88 KOG4579 Leucine-rich repeat (L 75.6 0.29 6.4E-06 43.1 -2.9 89 335-437 48-136 (177)
89 PF07723 LRR_2: Leucine Rich R 70.7 3.4 7.5E-05 25.2 1.8 25 259-283 2-26 (26)
90 PF13504 LRR_7: Leucine rich r 69.7 3.4 7.3E-05 22.4 1.4 10 366-375 2-11 (17)
91 PF09372 PRANC: PRANC domain; 68.6 13 0.00028 30.6 5.4 26 120-145 70-95 (97)
92 KOG0532 Leucine-rich repeat (L 65.8 0.54 1.2E-05 50.6 -4.2 28 468-495 223-250 (722)
93 PF13306 LRR_5: Leucine rich r 63.6 1.3 2.9E-05 38.0 -1.6 6 259-264 14-19 (129)
94 KOG3735 Tropomodulin and leiom 57.8 17 0.00036 36.9 4.8 42 267-308 182-223 (353)
95 KOG3735 Tropomodulin and leiom 45.5 18 0.00038 36.8 2.8 105 295-402 184-292 (353)
96 KOG3926 F-box proteins [Amino 40.8 12 0.00027 36.6 0.9 47 120-166 200-247 (332)
97 PHA03308 transcriptional regul 33.6 27 0.00058 38.7 2.1 20 510-529 1261-1280(1463)
98 PF02377 Dishevelled: Dishevel 30.5 26 0.00055 27.3 1.0 25 503-527 33-57 (73)
99 PF07735 FBA_2: F-box associat 29.1 2.5E+02 0.0053 21.0 7.0 60 364-431 10-69 (70)
100 PHA03100 ankyrin repeat protei 28.6 97 0.0021 33.2 5.5 30 120-149 446-475 (480)
101 PHA02875 ankyrin repeat protei 25.2 85 0.0018 32.9 4.3 27 119-145 384-410 (413)
102 KOG4408 Putative Mg2+ and Co2+ 25.1 24 0.00052 35.7 0.0 45 122-166 8-52 (386)
103 smart00369 LRR_TYP Leucine-ric 25.1 57 0.0012 19.3 1.7 11 365-375 2-12 (26)
104 smart00370 LRR Leucine-rich re 25.1 57 0.0012 19.3 1.7 11 365-375 2-12 (26)
105 KOG2502 Tub family proteins [G 23.1 40 0.00088 34.3 1.2 48 120-167 43-102 (355)
106 PHA02989 ankyrin repeat protei 22.8 1.5E+02 0.0033 32.1 5.7 29 119-147 456-484 (494)
107 PHA02878 ankyrin repeat protei 21.0 1.4E+02 0.003 32.2 4.9 27 119-145 444-470 (477)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=1e-44 Score=358.43 Aligned_cols=394 Identities=29% Similarity=0.408 Sum_probs=321.9
Q ss_pred ChhHHHHHHHHhhcCCCCCCccccchhhhhhccC-----CCCcchhhHHHHHHHHhhhHHHHhhhhhhhhhccCCCCCCC
Q 042559 50 NPSMDNLLETLLNLADSPPSLSIDVSFERLLDSA-----PGDEDQSHLIDRAIKVSSLLLESAKRSARKRASHHNFLAWP 124 (547)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~ 124 (547)
+.++|-++.+|..++|+- .++++.|++|.++.+ +++.+|+...++...+.+.|. +| |+..++...+.
T Consensus 3 ~sh~dl~iss~~s~sdss-~~S~~~S~dr~l~~~~~~~~~~e~~q~~~~~rtl~~a~~l~---~r----ra~~~~~~~~~ 74 (483)
T KOG4341|consen 3 ESHVDLAISSFLSVSDSS-PLSIGASSDRVLDSAQADSSSDELDQDREGDRTLSLASLLG---TR----RAADNNSISRS 74 (483)
T ss_pred ccccccccccceecccCC-CccccCccccccchhhcccccCcccchhhcChhhhcccchh---hh----hhhhccccccc
Confidence 457899999999999966 999999999999864 566778888888888877776 22 55667777899
Q ss_pred CChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCccccccccccccchHHHHHHHHHHhcCCccEEEecccCCCCCC
Q 042559 125 LPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYANIDLRTVVPKVNNAVVSTMIHRAGKSLQSLKLGIVPGPTAS 204 (547)
Q Consensus 125 LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~~vdL~~~~~~~~~~~l~~l~~r~~~~L~~L~L~~~~~~~~~ 204 (547)
||+|++.+||++|+.+.++++|+||+.|+.+|+|...|+++|+++++.++++.+++.+++|++.++|.|.+++|....+
T Consensus 75 LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~- 153 (483)
T KOG4341|consen 75 LPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD- 153 (483)
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998866554
Q ss_pred CccchhHHHHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeCCCCCCHHHHHHHHhcCCC
Q 042559 205 PWSCQSLVYTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYNIERMDNASLSMALSACPS 284 (547)
Q Consensus 205 ~~~c~~l~~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c~~lt~~~L~~l~~~~~~ 284 (547)
..+.....+|+++++|.++++...++.....++++|+ +|++|+|..|..+|+..++.++..|++
T Consensus 154 ----sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~------------~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 154 ----SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCR------------KLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ----chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcc------------hhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 2455677899999999888877777777788999999 699999999999999999999999999
Q ss_pred ccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCC--------------------------CCcC-----------
Q 042559 285 LLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGR--------------------------DDSL----------- 327 (547)
Q Consensus 285 L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~--------------------------~~~l----------- 327 (547)
|++|+++||+.++..+++.+.++|..++.+.+.||.... |..+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 999999999999998888888888777777666654333 3221
Q ss_pred ----------CCcchHHHhcCCCCcceEEeecc-CCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCc
Q 042559 328 ----------KSPTCVDFVNNCPNLTSMALRGF-KLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLL 395 (547)
Q Consensus 328 ----------~~~~l~~~~~~~~~L~~L~L~~~-~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L 395 (547)
....+.++..+|++|+.|.+.+| +++|.++..++.+|+.|+.+++.+|..+++..+..++. |+ .|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~---~l 374 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP---RL 374 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc---hh
Confidence 01123445566666777777766 56666666677777777777777776666666666665 44 48
Q ss_pred cEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc-chhhhccCCCCCcc-----------chhhhhhcCC
Q 042559 396 EVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS-EGDWYDRCFNSRII-----------PLKEVSEERP 463 (547)
Q Consensus 396 ~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~-~~~~l~~c~~L~~l-----------~l~~l~~~~~ 463 (547)
++|.|+.|..++|+++..+-.. ......|+.|.+++|+.+++ ..+++..|++|+++ +++....++|
T Consensus 375 r~lslshce~itD~gi~~l~~~--~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSS--SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhc--cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 8999999999999988554332 23567899999999999999 77889999999987 5567788999
Q ss_pred CcEEEeecCC
Q 042559 464 DICVLAEFPS 473 (547)
Q Consensus 464 ~l~~~~~~p~ 473 (547)
++++.++|.+
T Consensus 453 ~i~v~a~~a~ 462 (483)
T KOG4341|consen 453 NIKVHAYFAP 462 (483)
T ss_pred cceehhhccC
Confidence 9999999855
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.7e-27 Score=223.86 Aligned_cols=290 Identities=16% Similarity=0.185 Sum_probs=199.3
Q ss_pred CCCCChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCccccccccccccchHHHHHHHHHHhcCCccEEEecccCCC
Q 042559 122 AWPLPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYANIDLRTVVPKVNNAVVSTMIHRAGKSLQSLKLGIVPGP 201 (547)
Q Consensus 122 ~~~LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~~vdL~~~~~~~~~~~l~~l~~r~~~~L~~L~L~~~~~~ 201 (547)
|+.|||||+..||+.|..+++.+++.|||||++++.|.++|..+|++. +.+.+.++..+++|. +..+.+.. ..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~--r~i~p~~l~~l~~rg---V~v~Rlar--~~ 170 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTG--RNIHPDVLGRLLSRG---VIVFRLAR--SF 170 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCC--CccChhHHHHHHhCC---eEEEEcch--hh
Confidence 789999999999999999999999999999999999999999999876 456667777665542 22332221 00
Q ss_pred CCCCccchhHHHHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeCCCCCCHHHHHHHHhc
Q 042559 202 TASPWSCQSLVYTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYNIERMDNASLSMALSA 281 (547)
Q Consensus 202 ~~~~~~c~~l~~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c~~lt~~~L~~l~~~ 281 (547)
.+-++. ..+...--.+++.+++.... .+......+...|. +|+.|.|.|. .++|.....++.
T Consensus 171 ~~~prl---ae~~~~frsRlq~lDLS~s~-it~stl~~iLs~C~------------kLk~lSlEg~-~LdD~I~~~iAk- 232 (419)
T KOG2120|consen 171 MDQPRL---AEHFSPFRSRLQHLDLSNSV-ITVSTLHGILSQCS------------KLKNLSLEGL-RLDDPIVNTIAK- 232 (419)
T ss_pred hcCchh---hhhhhhhhhhhHHhhcchhh-eeHHHHHHHHHHHH------------hhhhcccccc-ccCcHHHHHHhc-
Confidence 011110 00111111234444433211 11111234556676 6888888877 556655555554
Q ss_pred CCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeecc--CCCHHHHHH
Q 042559 282 CPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGF--KLPDYKIRI 359 (547)
Q Consensus 282 ~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~--~ltd~~l~~ 359 (547)
..+|+.|+|+.|.+++..++..+..+|..|..|+|+.|...++. +.. .+..--++|+.|+|+|+ ++.+..+..
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv----~V~hise~l~~LNlsG~rrnl~~sh~~t 307 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTV----AVAHISETLTQLNLSGYRRNLQKSHLST 307 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhH----HHhhhchhhhhhhhhhhHhhhhhhHHHH
Confidence 46788888888888888888888888888888888888643332 221 23344578888888887 677778888
Q ss_pred HHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 360 LLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 360 l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
+++.||+|.+|||+.|..+++..+.++.+.+. |++|.++.|..+....+.+ .+..++|.+|++.||-.-+.
T Consensus 308 L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~---L~~lSlsRCY~i~p~~~~~------l~s~psl~yLdv~g~vsdt~ 378 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY---LQHLSLSRCYDIIPETLLE------LNSKPSLVYLDVFGCVSDTT 378 (419)
T ss_pred HHHhCCceeeeccccccccCchHHHHHHhcch---heeeehhhhcCCChHHeee------eccCcceEEEEeccccCchH
Confidence 88889999999999988888888888887766 8999999998887766522 24578899999988854444
Q ss_pred chhhhccCCCC
Q 042559 440 EGDWYDRCFNS 450 (547)
Q Consensus 440 ~~~~l~~c~~L 450 (547)
..-....|++|
T Consensus 379 mel~~e~~~~l 389 (419)
T KOG2120|consen 379 MELLKEMLSHL 389 (419)
T ss_pred HHHHHHhCccc
Confidence 32233566666
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.86 E-value=4.6e-22 Score=197.99 Aligned_cols=289 Identities=17% Similarity=0.215 Sum_probs=230.5
Q ss_pred CCCCCCChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCC-CCccccccccccccchHHHHHHHHHHhcCCccEEEeccc
Q 042559 120 FLAWPLPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDP-LCYANIDLRTVVPKVNNAVVSTMIHRAGKSLQSLKLGIV 198 (547)
Q Consensus 120 ~~~~~LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~-~lw~~vdL~~~~~~~~~~~l~~l~~r~~~~L~~L~L~~~ 198 (547)
+.|+.| ++.-.+ +++...+..++++|+.|+.+...+ ..|.. ..++.++ +.++.|++|+++.|
T Consensus 164 pnIehL--~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~------------~~Lk~la-~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 164 PNIEHL--ALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITD------------VSLKYLA-EGCRKLKYLNLSWC 226 (483)
T ss_pred Cchhhh--hhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHH------------HHHHHHH-HhhhhHHHhhhccC
Confidence 446666 444444 888899999999999999998766 44443 4445554 44577999999977
Q ss_pred CCCCCCCccchhHHHHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeCCCCCCHHHHHHH
Q 042559 199 PGPTASPWSCQSLVYTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYNIERMDNASLSMA 278 (547)
Q Consensus 199 ~~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c~~lt~~~L~~l 278 (547)
+.... ..+....+.|.++..+...++.............+|+ -+.++++..|..+||.++..+
T Consensus 227 ~qi~~-----~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~------------~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 227 PQISG-----NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL------------EILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred chhhc-----CcchHHhccchhhhhhhhcccccccHHHHHHHhccCh------------HhhccchhhhccccchHHHHH
Confidence 65543 1233445666666666554443333333334556676 478888889999999999999
Q ss_pred HhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeecc-CCCHHHH
Q 042559 279 LSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGF-KLPDYKI 357 (547)
Q Consensus 279 ~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~-~ltd~~l 357 (547)
...|..|+.|+.++|..+++..+.++..+|++|+.|.+.+|.++++..+.. +..+|++|+.+++.+| .++|..+
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~-----l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM-----LGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh-----hhcCChhhhhhcccccceehhhhH
Confidence 999999999999999999999999999999999999999999999988874 8999999999999998 6677779
Q ss_pred HHHHhcCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCC
Q 042559 358 RILLKGFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREG 436 (547)
Q Consensus 358 ~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~ 436 (547)
..++.+|+.|+.|.|+.|..|||+++.++.. -.....|+.|.|.+|+.+++..+. .+. .|++|+.+++.+|..
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~-----~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLS-----ICRNLERIELIDCQD 438 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHh-----hCcccceeeeechhh
Confidence 9999999999999999999999999999987 345678999999999999999884 433 589999999999999
Q ss_pred Ccc-chhhh-ccCCCCCcc
Q 042559 437 LAS-EGDWY-DRCFNSRII 453 (547)
Q Consensus 437 l~~-~~~~l-~~c~~L~~l 453 (547)
++. ....+ ..||+++..
T Consensus 439 vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 439 VTKEAISRFATHLPNIKVH 457 (483)
T ss_pred hhhhhhHHHHhhCccceeh
Confidence 988 33333 778888654
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.4e-13 Score=130.72 Aligned_cols=191 Identities=20% Similarity=0.265 Sum_probs=149.3
Q ss_pred CCccEEEecccCCCCCCCccchhHHHHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeCC
Q 042559 188 KSLQSLKLGIVPGPTASPWSCQSLVYTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYNI 267 (547)
Q Consensus 188 ~~L~~L~L~~~~~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c 267 (547)
..|++|+|+.-. -....+...+..|.++++|++.+...++.+ +..++.+- +|+.|+|++|
T Consensus 185 sRlq~lDLS~s~------it~stl~~iLs~C~kLk~lSlEg~~LdD~I-~~~iAkN~-------------~L~~lnlsm~ 244 (419)
T KOG2120|consen 185 SRLQHLDLSNSV------ITVSTLHGILSQCSKLKNLSLEGLRLDDPI-VNTIAKNS-------------NLVRLNLSMC 244 (419)
T ss_pred hhhHHhhcchhh------eeHHHHHHHHHHHHhhhhccccccccCcHH-HHHHhccc-------------cceeeccccc
Confidence 347788886321 112245556889999999999876655553 34565554 5999999999
Q ss_pred CCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEe
Q 042559 268 ERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMAL 347 (547)
Q Consensus 268 ~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L 347 (547)
..++..++..+.++|..|.+|+|+||...++..-..++.--++|+.|+|+||... +....+..+...||+|.+|+|
T Consensus 245 sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn----l~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 245 SGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN----LQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred cccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh----hhhhHHHHHHHhCCceeeecc
Confidence 9999999999999999999999999987777743344444578999999999532 122244568999999999999
Q ss_pred ecc-CCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCC
Q 042559 348 RGF-KLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHL 406 (547)
Q Consensus 348 ~~~-~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L 406 (547)
+.| .+++..+..+.+ ++.|++|.++.|+.|..+.+.++...+. |.+|++.+|-.-
T Consensus 321 SD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~i~p~~~~~l~s~ps---l~yLdv~g~vsd 376 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFK-FNYLQHLSLSRCYDIIPETLLELNSKPS---LVYLDVFGCVSD 376 (419)
T ss_pred ccccccCchHHHHHHh-cchheeeehhhhcCCChHHeeeeccCcc---eEEEEeccccCc
Confidence 997 888877776765 9999999999999999988888777665 999999998543
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=1.6e-11 Score=125.22 Aligned_cols=170 Identities=22% Similarity=0.205 Sum_probs=77.4
Q ss_pred CccEEEEeCCCCCC--HHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHH---hcC-CCccEEEecCCCCCCCCcCCCcc
Q 042559 258 LLRRLHLYNIERMD--NASLSMALSACPSLLDLEIVGLHVELRQTLMSVS---MSC-PLLERLFFESSKTGRDDSLKSPT 331 (547)
Q Consensus 258 ~L~~L~L~~c~~lt--~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~---~~~-~~L~~L~L~~c~~l~~~~l~~~~ 331 (547)
+|+.|+|++|.... ...+..+... ++|++|++++| .+++.++..+. ..+ ++|+.|++++|. ++..... .
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~--~ 156 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCE--A 156 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHH--H
Confidence 46666665554321 1222223333 44666666655 23333332221 223 555666666554 2211111 1
Q ss_pred hHHHhcCCCCcceEEeeccCCCHHHHHHHHhc---CCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEEeeeCCCCCC
Q 042559 332 CVDFVNNCPNLTSMALRGFKLPDYKIRILLKG---FRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVLILRDCMHLK 407 (547)
Q Consensus 332 l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~---~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls~C~~L~ 407 (547)
+......+++|++|++++|.+++.++..++.. +++|++|++++| .+++.++..++. ...+++|++|++++| .++
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~ 234 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLT 234 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCc
Confidence 12233444556666666665555544443322 235666666665 555555444433 233344666666654 355
Q ss_pred HHHHHHHHHHhhcCCCCCccEEeeeCCC
Q 042559 408 EVEVARFLTAVLTGDFKFLRHLDISNRE 435 (547)
Q Consensus 408 ~~~l~~~l~~~l~~~~~~L~~L~Ls~c~ 435 (547)
+.++..+...... ..+.|++|++++|.
T Consensus 235 ~~~~~~l~~~~~~-~~~~L~~L~l~~n~ 261 (319)
T cd00116 235 DAGAAALASALLS-PNISLLTLSLSCND 261 (319)
T ss_pred hHHHHHHHHHHhc-cCCCceEEEccCCC
Confidence 5444333322111 23556666666554
No 6
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.37 E-value=1.2e-12 Score=141.04 Aligned_cols=249 Identities=22% Similarity=0.258 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHhcCCccEEEecccCCCCCCCccchhHHHHHhcCcccceeecCC---CcccCCchhHHHHhhCCCCCccC
Q 042559 175 NNAVVSTMIHRAGKSLQSLKLGIVPGPTASPWSCQSLVYTIRNSVDVSSFSWND---KKTRQGKESFILTRSCLNPLSGE 251 (547)
Q Consensus 175 ~~~~l~~l~~r~~~~L~~L~L~~~~~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~---~~~~~~~~~~~l~~~c~~~l~~~ 251 (547)
....+..+... .+.++.|.+..|...++. .+......|++++.|.+.+ .....+.....+...|.
T Consensus 176 ~~~~~~~l~~~-~~~L~~l~l~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~------ 243 (482)
T KOG1947|consen 176 LDKILLRLLSS-CPLLKRLSLSGCSKITDD-----SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICR------ 243 (482)
T ss_pred cHHHHHHHHhh-CchhhHhhhcccccCChh-----hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcC------
Confidence 33444443333 567888888766554431 2445566778888777643 22223322233555555
Q ss_pred cCcCCCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcc
Q 042559 252 SGAAGSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPT 331 (547)
Q Consensus 252 ~~~~~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~ 331 (547)
+|+.|+++.|..+++.++..++..|++|++|.+.+|..+++.++..++.+|+.|++|++++|..+++.++.
T Consensus 244 ------~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~--- 314 (482)
T KOG1947|consen 244 ------KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLE--- 314 (482)
T ss_pred ------CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHH---
Confidence 68888888887788888888888888899988888877888888888888888999999888877666555
Q ss_pred hHHHhcCCCCcceEEeecc----CCCHHHHHHHHhcCC-CCcEEeccCCCCCCHHHHHHHHcCCCCCCcc-EEeeeCCCC
Q 042559 332 CVDFVNNCPNLTSMALRGF----KLPDYKIRILLKGFR-KLKYVDFSTSYSITGAFLRNLGSGTGGNLLE-VLILRDCMH 405 (547)
Q Consensus 332 l~~~~~~~~~L~~L~L~~~----~ltd~~l~~l~~~~~-~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~-~L~Ls~C~~ 405 (547)
.++.+|++|+.|.+..+ .+++..+..+..... .++.+.+.+|..+++..+...+ ... .. .+.+.+|++
T Consensus 315 --~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~---~~~~~~l~gc~~ 388 (482)
T KOG1947|consen 315 --ALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISD---LGLELSLRGCPN 388 (482)
T ss_pred --HHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccC---cchHHHhcCCcc
Confidence 36777888877776553 366666666555443 6677777777777776666655 222 22 567777777
Q ss_pred CCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc-chhhhcc-CCCCCccchh
Q 042559 406 LKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS-EGDWYDR-CFNSRIIPLK 456 (547)
Q Consensus 406 L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~-~~~~l~~-c~~L~~l~l~ 456 (547)
++ .++..... .+.+++.|+++.|..++. ....... |.++..+++.
T Consensus 389 l~-~~l~~~~~-----~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~ 435 (482)
T KOG1947|consen 389 LT-ESLELRLC-----RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLS 435 (482)
T ss_pred cc-hHHHHHhc-----cCCccceEecccCccccccchHHHhhhhhccccCCcc
Confidence 76 55522221 344488888888888777 3333333 5555555443
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.32 E-value=1.4e-12 Score=140.45 Aligned_cols=188 Identities=23% Similarity=0.332 Sum_probs=152.6
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEec-CCCCCHHH--HHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVG-LHVELRQT--LMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~-c~~i~~~~--l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
.|+.|.+.+|..+++.++..++..|++|++|++++ |......+ ...+...|++|+.|+++.|..+++.++. .
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~-----~ 263 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS-----A 263 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH-----H
Confidence 79999999999999988999999999999999998 44444333 4557788999999999999888887776 4
Q ss_pred HhcCCCCcceEEeeccC-CCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEEeeeCCCCCCHHHHH
Q 042559 335 FVNNCPNLTSMALRGFK-LPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVLILRDCMHLKEVEVA 412 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~-ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls~C~~L~~~~l~ 412 (547)
++..|++|++|.+.+|. +++.++..+++.|+.|++|+|++|..+++.++..++. |+++..|+.+.+.+|..+++.++.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~ 343 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS 343 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence 77789999999988885 9999999999999999999999999999999988866 777555666666677788888775
Q ss_pred HHHH-------HhhcCCCCCccEEeeeCCCCCccch--hhhccCCCCC
Q 042559 413 RFLT-------AVLTGDFKFLRHLDISNREGLASEG--DWYDRCFNSR 451 (547)
Q Consensus 413 ~~l~-------~~l~~~~~~L~~L~Ls~c~~l~~~~--~~l~~c~~L~ 451 (547)
.+.. ......|++|+.+.|.+|. .++.+ ..+..|+++.
T Consensus 344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 344 GLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT 390 (482)
T ss_pred HhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc
Confidence 4433 1344588999999999988 55532 4558888883
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.24 E-value=9.6e-11 Score=119.45 Aligned_cols=173 Identities=18% Similarity=0.138 Sum_probs=111.5
Q ss_pred CccEEEEeCCCCCCHHHHHHH---HhcC-CCccEEEEecCCCCCHHH---HHHHHhcCCCccEEEecCCCCCCCCcCCCc
Q 042559 258 LLRRLHLYNIERMDNASLSMA---LSAC-PSLLDLEIVGLHVELRQT---LMSVSMSCPLLERLFFESSKTGRDDSLKSP 330 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l---~~~~-~~L~~L~Ls~c~~i~~~~---l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~ 330 (547)
+|++|++++|. +++.++..+ ...+ ++|++|++++|. ++..+ +......+++|++|++++|. +++..+.
T Consensus 109 ~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-- 183 (319)
T cd00116 109 SLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNG-IGDAGIR-- 183 (319)
T ss_pred cccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHH--
Confidence 58888888884 555554443 2344 788888888884 44333 33334556788888888875 3332221
Q ss_pred chHHHhcCCCCcceEEeeccCCCHHHHHHHH---hcCCCCcEEeccCCCCCCHHHHHHHHc-CC-CCCCccEEeeeCCCC
Q 042559 331 TCVDFVNNCPNLTSMALRGFKLPDYKIRILL---KGFRKLKYVDFSTSYSITGAFLRNLGS-GT-GGNLLEVLILRDCMH 405 (547)
Q Consensus 331 ~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~---~~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~-~l~~L~~L~Ls~C~~ 405 (547)
.+......+++|++|++++|.+++.++..+. ..+++|++|++++| .+++.++..++. +. ....|++|++++| .
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~ 261 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-D 261 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-C
Confidence 1122334557888999888888877665543 35678889999888 788877777665 21 1245888998886 5
Q ss_pred CCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 406 LKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 406 L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
+++.+...+... . ..+++|++|++++|..-..
T Consensus 262 i~~~~~~~l~~~-~-~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 262 ITDDGAKDLAEV-L-AEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCcHHHHHHHHH-H-hcCCCccEEECCCCCCcHH
Confidence 665555333332 1 2457888888888866544
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.17 E-value=1.4e-10 Score=136.32 Aligned_cols=129 Identities=20% Similarity=0.194 Sum_probs=65.9
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCC--CCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHV--ELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~--i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
++|++|+|++|.. + ..+......+++|++|+|++|.. .....+ ..+++|++|++++|... .. +. .
T Consensus 140 ~~L~~L~Ls~n~~-~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~n~l~-~~-~p-----~ 206 (968)
T PLN00113 140 PNLETLDLSNNML-S-GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL----TNLTSLEFLTLASNQLV-GQ-IP-----R 206 (968)
T ss_pred CCCCEEECcCCcc-c-ccCChHHhcCCCCCEEECccCcccccCChhh----hhCcCCCeeeccCCCCc-Cc-CC-----h
Confidence 3577777776633 2 12233345667777777776632 111222 45666777777666421 11 11 2
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCC
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDC 403 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C 403 (547)
.+.++++|++|++.+|.++......+. ++++|++|++++| .+++.....+..+++ |++|+|++|
T Consensus 207 ~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~~p~~l~~l~~---L~~L~L~~n 270 (968)
T PLN00113 207 ELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYN-NLTGPIPSSLGNLKN---LQYLFLYQN 270 (968)
T ss_pred HHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCc-eeccccChhHhCCCC---CCEEECcCC
Confidence 344556666666666555443333332 3556666666665 454444444444433 555555554
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.14 E-value=3.3e-10 Score=133.13 Aligned_cols=222 Identities=16% Similarity=0.097 Sum_probs=139.8
Q ss_pred CCccEEEecccCCCCCCCccchhHHHHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeCC
Q 042559 188 KSLQSLKLGIVPGPTASPWSCQSLVYTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYNI 267 (547)
Q Consensus 188 ~~L~~L~L~~~~~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c 267 (547)
..++.|+|++..-. +.+...+...++++.|.+.+..- .+.....+...+ .+|++|+|++|
T Consensus 69 ~~v~~L~L~~~~i~-------~~~~~~~~~l~~L~~L~Ls~n~~-~~~ip~~~~~~l------------~~L~~L~Ls~n 128 (968)
T PLN00113 69 SRVVSIDLSGKNIS-------GKISSAIFRLPYIQTINLSNNQL-SGPIPDDIFTTS------------SSLRYLNLSNN 128 (968)
T ss_pred CcEEEEEecCCCcc-------ccCChHHhCCCCCCEEECCCCcc-CCcCChHHhccC------------CCCCEEECcCC
Confidence 46888888743211 11233456677888887754321 111111222233 37999999998
Q ss_pred CCCCHHHHHHHHhcCCCccEEEEecCCCC--CHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceE
Q 042559 268 ERMDNASLSMALSACPSLLDLEIVGLHVE--LRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSM 345 (547)
Q Consensus 268 ~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i--~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L 345 (547)
..... +. ...+++|++|+|++|... ....+ ..+++|++|++++|.... .++ ..+.++++|++|
T Consensus 129 ~l~~~--~p--~~~l~~L~~L~Ls~n~~~~~~p~~~----~~l~~L~~L~L~~n~l~~--~~p-----~~~~~l~~L~~L 193 (968)
T PLN00113 129 NFTGS--IP--RGSIPNLETLDLSNNMLSGEIPNDI----GSFSSLKVLDLGGNVLVG--KIP-----NSLTNLTSLEFL 193 (968)
T ss_pred ccccc--cC--ccccCCCCEEECcCCcccccCChHH----hcCCCCCEEECccCcccc--cCC-----hhhhhCcCCCee
Confidence 54221 11 135789999999998432 12233 678999999999886321 122 256678999999
Q ss_pred EeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCC
Q 042559 346 ALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKF 425 (547)
Q Consensus 346 ~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~ 425 (547)
++++|.++......+. .+++|++|+|++| .+++.....++.+++ |++|++++|....... .. .+++++
T Consensus 194 ~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~~p~~l~~l~~---L~~L~L~~n~l~~~~p--~~-----l~~l~~ 261 (968)
T PLN00113 194 TLASNQLVGQIPRELG-QMKSLKWIYLGYN-NLSGEIPYEIGGLTS---LNHLDLVYNNLTGPIP--SS-----LGNLKN 261 (968)
T ss_pred eccCCCCcCcCChHHc-CcCCccEEECcCC-ccCCcCChhHhcCCC---CCEEECcCceeccccC--hh-----HhCCCC
Confidence 9999987655444454 5899999999998 788777777777665 9999999875321110 00 125667
Q ss_pred ccEEeeeCCCCCccchhhhccCCCCCccchh
Q 042559 426 LRHLDISNREGLASEGDWYDRCFNSRIIPLK 456 (547)
Q Consensus 426 L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~ 456 (547)
|+.|+|++|...+..+..+.++++|+.+.+.
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 7777777765544445555556666655443
No 11
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.13 E-value=1.8e-11 Score=87.67 Aligned_cols=46 Identities=24% Similarity=0.473 Sum_probs=40.7
Q ss_pred CCCCChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCcccccc
Q 042559 122 AWPLPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYANIDL 167 (547)
Q Consensus 122 ~~~LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~~vdL 167 (547)
|..||+|++.+||+||+.+|++++++|||+|+.++.++.+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 5689999999999999999999999999999999999899998864
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=1.6e-09 Score=106.91 Aligned_cols=193 Identities=17% Similarity=0.132 Sum_probs=137.8
Q ss_pred CccEEEEeCCCCCCH---HHHHHHHhcCCCccEEEEecCCCCCHHHHHHHH------------hcCCCccEEEecCCCCC
Q 042559 258 LLRRLHLYNIERMDN---ASLSMALSACPSLLDLEIVGLHVELRQTLMSVS------------MSCPLLERLFFESSKTG 322 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~---~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~------------~~~~~L~~L~L~~c~~l 322 (547)
+|++|+|+.|. +.. ..+..+++.|..|++|.|.+| .+...+-..++ ..-++|+++...+|+.
T Consensus 93 ~L~~ldLSDNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl- 169 (382)
T KOG1909|consen 93 KLQKLDLSDNA-FGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL- 169 (382)
T ss_pred ceeEeeccccc-cCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-
Confidence 79999999884 333 456677888999999999999 56555533322 2346799999988863
Q ss_pred CCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHH---hcCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEE
Q 042559 323 RDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILL---KGFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVL 398 (547)
Q Consensus 323 ~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~---~~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L 398 (547)
.+.+-. .+...+..+|.|+.+.+..|.|..+++..++ ..||+|+.|||..+ .+|-.+-..++. ++.+++|++|
T Consensus 170 en~ga~--~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 170 ENGGAT--ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccccHH--HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheee
Confidence 222211 2345667789999999999988887775443 46899999999998 888888888887 6667789999
Q ss_pred eeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccchhhh----ccCCCCCccchhhh
Q 042559 399 ILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASEGDWY----DRCFNSRIIPLKEV 458 (547)
Q Consensus 399 ~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l----~~c~~L~~l~l~~l 458 (547)
++++| .+.+.+...+..... ...++|+.|++.+|....+...-+ ..-+.|.+|.+..+
T Consensus 247 ~l~dc-ll~~~Ga~a~~~al~-~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 247 NLGDC-LLENEGAIAFVDALK-ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccccc-ccccccHHHHHHHHh-ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 99998 467777656655533 358899999999997665533333 33345555544433
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.75 E-value=3.3e-08 Score=117.65 Aligned_cols=63 Identities=22% Similarity=0.305 Sum_probs=33.7
Q ss_pred CCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCC
Q 042559 339 CPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLK 407 (547)
Q Consensus 339 ~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~ 407 (547)
+++|+.|++++|.........+ .++++|+.|+|++|..++. +....++++|+.|+|++|.++.
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~-----LP~~~~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLET-----LPTGINLESLESLDLSGCSRLR 839 (1153)
T ss_pred cccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCe-----eCCCCCccccCEEECCCCCccc
Confidence 4567777777663222222222 3467777777777755432 2221134457777777776554
No 14
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6.6e-09 Score=105.26 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=79.4
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|+.+.|.++ .+.+......+..||+++.|+|+..---....+..++..+|+|+.|+|+.+......+- ....
T Consensus 122 kL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s------~~~~ 194 (505)
T KOG3207|consen 122 KLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS------NTTL 194 (505)
T ss_pred hhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc------cchh
Confidence 5777777766 44544444567788888888888765555666777888888888888887753221111 1222
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCC
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSY 376 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~ 376 (547)
..++|+.|.|++|+++-..+..++..||.|+.|+|..+.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 567788888888888888888888888888888888773
No 15
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.67 E-value=2e-07 Score=92.39 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=62.1
Q ss_pred HHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHh---cCCCCcEEeccCCCC
Q 042559 301 LMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLK---GFRKLKYVDFSTSYS 377 (547)
Q Consensus 301 l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~---~~~~L~~L~Ls~c~~ 377 (547)
+....+.+|.|+.+.+..+. +...++. .+...+.+||+|+.|+|..|.++-.+-..+++ .+++|+.|+++.| .
T Consensus 177 ~A~~~~~~~~leevr~~qN~-I~~eG~~--al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-l 252 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNG-IRPEGVT--ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-L 252 (382)
T ss_pred HHHHHHhccccceEEEeccc-ccCchhH--HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-c
Confidence 33344455556666655543 2212110 12234455666666666666555554444433 3455666666666 6
Q ss_pred CCHHHHHHHHc--CCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCC
Q 042559 378 ITGAFLRNLGS--GTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREG 436 (547)
Q Consensus 378 lt~~~l~~L~~--~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~ 436 (547)
+.+.+..++.. -...+.|++|.+.+|. ++..+...+... + ..-+.|+.|+|++|..
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~-~-~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAAC-M-AEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHH-H-hcchhhHHhcCCcccc
Confidence 65555554443 1123346666666643 333322111111 1 1355666666666654
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.67 E-value=5.5e-08 Score=115.76 Aligned_cols=157 Identities=16% Similarity=0.170 Sum_probs=83.1
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
.++|+.|+|.+|..+. .+......+++|+.|++++|..+..-.. ..++++|+.|++++|..+...
T Consensus 656 l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~L~~Lp~---~i~l~sL~~L~Lsgc~~L~~~---------- 720 (1153)
T PLN03210 656 ATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCENLEILPT---GINLKSLYRLNLSGCSRLKSF---------- 720 (1153)
T ss_pred CCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCCcCccCC---cCCCCCCCEEeCCCCCCcccc----------
Confidence 3467777777776543 2334445677777777777754432211 014566777777777543211
Q ss_pred hcCCCCcceEEeeccCCCHHH---------------------------H-HHHHhcCCCCcEEeccCCCCCCHHHHHHHH
Q 042559 336 VNNCPNLTSMALRGFKLPDYK---------------------------I-RILLKGFRKLKYVDFSTSYSITGAFLRNLG 387 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~---------------------------l-~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~ 387 (547)
....++|+.|++.++.+..-. + ......+++|+.|+|++|..+. ..+..++
T Consensus 721 p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~lP~si~ 799 (1153)
T PLN03210 721 PDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV-ELPSSIQ 799 (1153)
T ss_pred ccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc-ccChhhh
Confidence 011233444444443321100 0 0011124567777777774332 2334444
Q ss_pred cCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 388 SGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 388 ~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
.++ +|+.|+|++|.+++.... ..++++|+.|++++|..+..
T Consensus 800 ~L~---~L~~L~Ls~C~~L~~LP~--------~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 800 NLH---KLEHLEIENCINLETLPT--------GINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred CCC---CCCEEECCCCCCcCeeCC--------CCCccccCEEECCCCCcccc
Confidence 444 488888888877664321 01466777777777766554
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=4.3e-09 Score=106.62 Aligned_cols=203 Identities=16% Similarity=0.086 Sum_probs=117.0
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+++.|+|+++-.-.-..+..++..+|+|+.|+|+.+......+ ......+++|+.|.|++|. ++ ...+..++.
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l~~lK~L~l~~CG-ls-----~k~V~~~~~ 219 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLLSHLKQLVLNSCG-LS-----WKDVQWILL 219 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhhhhhheEEeccCC-CC-----HHHHHHHHH
Confidence 6888888888666666777888888888888888742111100 0000245778888888886 22 223445777
Q ss_pred CCCCcceEEeecc-CCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 338 NCPNLTSMALRGF-KLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 338 ~~~~L~~L~L~~~-~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
.||+|+.|.+.+| .+.-..... +.+..|+.|+|+++..++-.-...++.+++ |+.|+++.|. +++......-.
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l~~---L~~Lnls~tg-i~si~~~d~~s 293 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTLPG---LNQLNLSSTG-IASIAEPDVES 293 (505)
T ss_pred hCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccccccc---hhhhhccccC-cchhcCCCccc
Confidence 8888888888887 332221111 113458888888886666554455555554 8888888753 33322211100
Q ss_pred HhhcCCCCCccEEeeeCCCCCcc-chhhhccCCCCCccch--hhhhh--cCCCcEEEeecCC
Q 042559 417 AVLTGDFKFLRHLDISNREGLAS-EGDWYDRCFNSRIIPL--KEVSE--ERPDICVLAEFPS 473 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~-~~~~l~~c~~L~~l~l--~~l~~--~~~~l~~~~~~p~ 473 (547)
.-....+++|+.|++..|+.... ....+...++|+.+.+ ..+.+ +-....++|+++.
T Consensus 294 ~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~ 355 (505)
T KOG3207|consen 294 LDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQ 355 (505)
T ss_pred hhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhh
Confidence 00112578899999988876444 3455555556655532 11111 1223336776655
No 18
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.52 E-value=9.4e-08 Score=65.96 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=37.9
Q ss_pred CChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCccc
Q 042559 125 LPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYAN 164 (547)
Q Consensus 125 LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~~ 164 (547)
||+|++..||.+|+..|+.++++|||+|+.++.++..|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999998888864
No 19
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.38 E-value=3.5e-07 Score=101.87 Aligned_cols=45 Identities=22% Similarity=0.376 Sum_probs=22.1
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCH
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITG 380 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~ 380 (547)
+...+|+|++|.+.|-.+..+.+..++.++|+|..|||+++ +|++
T Consensus 143 ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n 187 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISN 187 (699)
T ss_pred HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccC
Confidence 44445555555555544444444445555555555555554 4443
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.37 E-value=1.2e-07 Score=99.33 Aligned_cols=205 Identities=18% Similarity=0.133 Sum_probs=104.3
Q ss_pred CCccEEEEeCCCC--CCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 257 SLLRRLHLYNIER--MDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 257 ~~L~~L~L~~c~~--lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
.+|+.|+|.++.. ++.+. .+..|.|+.|||+.+ .++......+ ..-.++++|+|+++. +++....
T Consensus 125 ghl~~L~L~~N~I~sv~se~----L~~l~alrslDLSrN-~is~i~~~sf-p~~~ni~~L~La~N~-It~l~~~------ 191 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEE----LSALPALRSLDLSRN-LISEIPKPSF-PAKVNIKKLNLASNR-ITTLETG------ 191 (873)
T ss_pred cceeEEeeeccccccccHHH----HHhHhhhhhhhhhhc-hhhcccCCCC-CCCCCceEEeecccc-ccccccc------
Confidence 4566666666532 22222 234556666666654 2211111000 112347777777664 3332222
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCC--CCCHHHHH
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCM--HLKEVEVA 412 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~--~L~~~~l~ 412 (547)
-...+.+|..|.|+.|+++.-.... ++++|+|+.|+|..+ .|.-. +.+. ...+++|+.|.|.... .++|-..
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~-Fk~L~~L~~LdLnrN-~iriv--e~lt-FqgL~Sl~nlklqrN~I~kL~DG~F- 265 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRS-FKRLPKLESLDLNRN-RIRIV--EGLT-FQGLPSLQNLKLQRNDISKLDDGAF- 265 (873)
T ss_pred cccccchheeeecccCcccccCHHH-hhhcchhhhhhcccc-ceeee--hhhh-hcCchhhhhhhhhhcCcccccCcce-
Confidence 1223446667777776665443333 344677777777666 44221 1111 1222235555554321 1222111
Q ss_pred HHHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeec-CCCCCccccccccccccccc
Q 042559 413 RFLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEF-PSEGSFIDIEQMVDSEFNSE 491 (547)
Q Consensus 413 ~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~-p~~~~~~~~~~~l~~~~n~~ 491 (547)
-.|.++++|+|+.|....-..+|+.....|+.+.+..+.- .+| +...++...+..+++.+|+.
T Consensus 266 --------y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI--------~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 266 --------YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI--------QRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred --------eeecccceeecccchhhhhhcccccccchhhhhccchhhh--------heeecchhhhcccceeEecccccc
Confidence 2567788888887765444556777777777777766651 222 23456667777777777765
Q ss_pred Ccccc
Q 042559 492 ISLPS 496 (547)
Q Consensus 492 ~~~~~ 496 (547)
-.++.
T Consensus 330 ~~l~~ 334 (873)
T KOG4194|consen 330 TRLDE 334 (873)
T ss_pred ccCCh
Confidence 44443
No 21
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.31 E-value=4.9e-08 Score=70.09 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=35.9
Q ss_pred CCCCChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCccc
Q 042559 122 AWPLPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYAN 164 (547)
Q Consensus 122 ~~~LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~~ 164 (547)
+..||+|++.+||+||+..+++++++|||+|+.++.+...|..
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 5679999999999999999999999999999999887766653
No 22
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.17 E-value=8.2e-07 Score=93.16 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=32.8
Q ss_pred CCCCccEEeeeCCCCCc---cchhhhccCCCCCccchhhhhhcCCCcEEEeecCCC-CCcccccccccccccc
Q 042559 422 DFKFLRHLDISNREGLA---SEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSE-GSFIDIEQMVDSEFNS 490 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l~---~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~-~~~~~~~~~l~~~~n~ 490 (547)
..++|++|||+.|.... ++...+...++|+++.+..++ +..+|.. .+.++.+..+++..|.
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq--------lk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ--------LKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce--------eeecchhhhccCcccceecCCCCc
Confidence 46778888888775332 222344556677666554433 1223331 2344555556666665
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.17 E-value=3.9e-07 Score=84.18 Aligned_cols=106 Identities=21% Similarity=0.182 Sum_probs=26.0
Q ss_pred CCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHH
Q 042559 282 CPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILL 361 (547)
Q Consensus 282 ~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~ 361 (547)
+-.+++|+|.++ .++. ++.+...+.+|+.|++++|. ++. +. -+..+++|++|++++|.+++-+ ..+.
T Consensus 18 ~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~--l~------~l~~L~~L~~L~L~~N~I~~i~-~~l~ 84 (175)
T PF14580_consen 18 PVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQ-ITK--LE------GLPGLPRLKTLDLSNNRISSIS-EGLD 84 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S----T------T----TT--EEE--SS---S-C-HHHH
T ss_pred cccccccccccc-cccc--ccchhhhhcCCCEEECCCCC-Ccc--cc------CccChhhhhhcccCCCCCCccc-cchH
Confidence 345666666665 2221 22222345566666666664 111 11 2233566777777776665421 1232
Q ss_pred hcCCCCcEEeccCCCCCCH-HHHHHHHcCCCCCCccEEeeeCCC
Q 042559 362 KGFRKLKYVDFSTSYSITG-AFLRNLGSGTGGNLLEVLILRDCM 404 (547)
Q Consensus 362 ~~~~~L~~L~Ls~c~~lt~-~~l~~L~~~~~l~~L~~L~Ls~C~ 404 (547)
..+|+|++|.++++ .|.+ ..+..|+.+++ |++|+|.++|
T Consensus 85 ~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~---L~~L~L~~NP 124 (175)
T PF14580_consen 85 KNLPNLQELYLSNN-KISDLNELEPLSSLPK---LRVLSLEGNP 124 (175)
T ss_dssp HH-TT--EEE-TTS----SCCCCGGGGG-TT-----EEE-TT-G
T ss_pred HhCCcCCEEECcCC-cCCChHHhHHHHcCCC---cceeeccCCc
Confidence 34667777777666 4433 11222333332 6666665544
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=5.1e-06 Score=92.71 Aligned_cols=147 Identities=19% Similarity=0.190 Sum_probs=95.6
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|++|+++|...+...-...+...+|+|+.|.+.+- .+....+..+..++|+|..|+++++. +++. ..+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl--------~GIS 192 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTN-ISNL--------SGIS 192 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCC-ccCc--------HHHh
Confidence 688888888776666666677778888888888876 33334477777888888888888765 2221 2556
Q ss_pred CCCCcceEEeeccCCCH-HHHHHHHhcCCCCcEEeccCCCCCCHH-HHH-HHHcCCCCCCccEEeeeCCCCCCHHHHHHH
Q 042559 338 NCPNLTSMALRGFKLPD-YKIRILLKGFRKLKYVDFSTSYSITGA-FLR-NLGSGTGGNLLEVLILRDCMHLKEVEVARF 414 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd-~~l~~l~~~~~~L~~L~Ls~c~~lt~~-~l~-~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~ 414 (547)
++++|+.|.+.+-.+.. ..+..++. +.+|+.||+|.-....+. .+. .+..-..++.|+.||.++ +.+.+.-+..+
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~l 270 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEEL 270 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHH
Confidence 67788888887765554 45566664 788888888876555444 122 122222244588888776 45555555444
Q ss_pred HH
Q 042559 415 LT 416 (547)
Q Consensus 415 l~ 416 (547)
+.
T Consensus 271 l~ 272 (699)
T KOG3665|consen 271 LN 272 (699)
T ss_pred HH
Confidence 44
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.99 E-value=4e-07 Score=84.13 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=35.5
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+++.|+|.++.. +. ++.+...+.+|+.|++++|.-..-+++ ..++.|+.|++++|. ++. +.. .+..
T Consensus 20 ~~~~L~L~~n~I-~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l----~~L~~L~~L~L~~N~-I~~--i~~----~l~~ 85 (175)
T PF14580_consen 20 KLRELNLRGNQI-ST--IENLGATLDKLEVLDLSNNQITKLEGL----PGLPRLKTLDLSNNR-ISS--ISE----GLDK 85 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S---CH----HHHH
T ss_pred cccccccccccc-cc--ccchhhhhcCCCEEECCCCCCccccCc----cChhhhhhcccCCCC-CCc--ccc----chHH
Confidence 578888888743 21 344444567888888888754443444 557888888888775 222 110 1334
Q ss_pred CCCCcceEEeeccCCCHH-HHHHHHhcCCCCcEEeccCCCCCC
Q 042559 338 NCPNLTSMALRGFKLPDY-KIRILLKGFRKLKYVDFSTSYSIT 379 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~-~l~~l~~~~~~L~~L~Ls~c~~lt 379 (547)
.+|+|++|.+++|++.+- .+..+. .+|+|++|+|.++ .++
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~-~l~~L~~L~L~~N-Pv~ 126 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLS-SLPKLRVLSLEGN-PVC 126 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGG-G-TT--EEE-TT--GGG
T ss_pred hCCcCCEEECcCCcCCChHHhHHHH-cCCCcceeeccCC-ccc
Confidence 678888888888866552 233443 4888888888887 444
No 26
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.95 E-value=3.3e-07 Score=96.61 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=36.1
Q ss_pred CCCccEEeeeCCCCCcc-chhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCccccc
Q 042559 423 FKFLRHLDISNREGLAS-EGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEISLPSQ 497 (547)
Q Consensus 423 ~~~L~~L~Ls~c~~l~~-~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~~~~~ 497 (547)
+++|+.|.+.+|...-+ ++.+++...+|+.+....+. +.-.|.+++.+..++-+.++-|..+++|--
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~--------LElVPEglcRC~kL~kL~L~~NrLiTLPea 357 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK--------LELVPEGLCRCVKLQKLKLDHNRLITLPEA 357 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc--------cccCchhhhhhHHHHHhcccccceeechhh
Confidence 44555555555543333 44444444444443333222 233466667777777777777776677654
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.90 E-value=1.1e-05 Score=89.26 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=28.3
Q ss_pred cCcCCCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecC
Q 042559 252 SGAAGSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGL 293 (547)
Q Consensus 252 ~~~~~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c 293 (547)
..+.+.+|++++++.+... .++.....|++|+.|++...
T Consensus 236 ~~p~p~nl~~~dis~n~l~---~lp~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 236 VHPVPLNLQYLDISHNNLS---NLPEWIGACANLEALNANHN 274 (1081)
T ss_pred cccccccceeeecchhhhh---cchHHHHhcccceEecccch
Confidence 3445678999999887543 25577778889988888764
No 28
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.74 E-value=0.00021 Score=68.96 Aligned_cols=71 Identities=24% Similarity=0.218 Sum_probs=31.8
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHc--CCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 365 RKLKYVDFSTSYSITGAFLRNLGS--GTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 365 ~~L~~L~Ls~c~~lt~~~l~~L~~--~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
.+|+.+.+..+ .|.+.++..|+. ...+.+|++|+|+... ++-.+- ..+...+ ...+.|+.|.+..|-..+.
T Consensus 185 ~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS-~~La~al-~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 185 ENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGS-RYLADAL-CEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred cCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhH-HHHHHHh-cccchhhhccccchhhccc
Confidence 35556666555 555555444432 1112236666666532 333222 1111111 1334466666666644433
No 29
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.73 E-value=0.00019 Score=69.27 Aligned_cols=178 Identities=18% Similarity=0.153 Sum_probs=118.9
Q ss_pred CCccEEEEeCCCCCC--HHHHHHHHhcCCCccEEEEecCCCCCHHH------HHHH-----HhcCCCccEEEecCCCCCC
Q 042559 257 SLLRRLHLYNIERMD--NASLSMALSACPSLLDLEIVGLHVELRQT------LMSV-----SMSCPLLERLFFESSKTGR 323 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt--~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~------l~~l-----~~~~~~L~~L~L~~c~~l~ 323 (547)
|+|+..+|+.+.+-. ...+..+++.-..|++|.+++|..-...| +..+ +..-|.|++.....++.-
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 389999999884421 23455667778889999999984322222 2222 234578999998877632
Q ss_pred CCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHH----hcCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEE
Q 042559 324 DDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILL----KGFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVL 398 (547)
Q Consensus 324 ~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~----~~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L 398 (547)
..+.. .....+..-.+|+++.+..|.|.++|+..++ ..|.+|+.|||..+ .+|-.+-..|+. ++.-+.|++|
T Consensus 171 ngs~~--~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 171 NGSKE--LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred cCcHH--HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhc
Confidence 21111 1112333336899999999999999877654 35899999999998 888887777776 3333459999
Q ss_pred eeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 399 ILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 399 ~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
.+..|- ++..++..++...-....++|..|...+|..-.+
T Consensus 248 ~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 248 RLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred cccchh-hccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 999984 5555655555443333567888888877765444
No 30
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=2e-05 Score=72.90 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=52.6
Q ss_pred cceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcC
Q 042559 342 LTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTG 421 (547)
Q Consensus 342 L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~ 421 (547)
++.++-+++.|..+|+..+- .++.++.|.+.+|..+.|..+..|+.. .++|+.|+|++|++||+.+++.+.
T Consensus 103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~--~~~L~~L~lsgC~rIT~~GL~~L~------ 173 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGL--APSLQDLDLSGCPRITDGGLACLL------ 173 (221)
T ss_pred EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhccc--ccchheeeccCCCeechhHHHHHH------
Confidence 44455555566666666654 366677777777766777666666662 124777777777777776664332
Q ss_pred CCCCccEEeeeCCCCC
Q 042559 422 DFKFLRHLDISNREGL 437 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l 437 (547)
.+++|+.|.|.+-+.+
T Consensus 174 ~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhhhhHHHHhcCchhh
Confidence 3566666666554433
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=5.8e-05 Score=73.64 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=51.9
Q ss_pred cEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCC
Q 042559 260 RRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNC 339 (547)
Q Consensus 260 ~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~ 339 (547)
+-|.+.+|..=+.+....+...|..+++|+|.++.-.....+..+..++|.|+.|+|+.+..-.+ +.+ ...-.
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~~-----lp~p~ 120 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IKS-----LPLPL 120 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--ccc-----Ccccc
Confidence 34444454333333444555555556666665553333444555555666666666654431111 110 11112
Q ss_pred CCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCC
Q 042559 340 PNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTS 375 (547)
Q Consensus 340 ~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c 375 (547)
.+|+.|-|.|..+.-..+..+...+|+++.|+++.+
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 355555555555544444455555555555555443
No 32
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.63 E-value=4.9e-06 Score=88.04 Aligned_cols=140 Identities=17% Similarity=0.210 Sum_probs=82.6
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHH
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARF 414 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~ 414 (547)
.+-+.++|+.|+|++|.++.-.+.. ....+|+.|+++.+ ++|.- +.++.+++ .|+.|.+.+ +.++-.++-.
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~~~--~~W~~lEtLNlSrN-QLt~L-P~avcKL~---kL~kLy~n~-NkL~FeGiPS- 310 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNMTE--GEWENLETLNLSRN-QLTVL-PDAVCKLT---KLTKLYANN-NKLTFEGIPS- 310 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeeccH--HHHhhhhhhccccc-hhccc-hHHHhhhH---HHHHHHhcc-CcccccCCcc-
Confidence 4445566667777766555422111 11345666777666 44421 22333333 266665554 3344333310
Q ss_pred HHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCcc
Q 042559 415 LTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEISL 494 (547)
Q Consensus 415 l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~~ 494 (547)
..|.+..|+.+...+| .+.-.++.+.+|.+|+++.+..++ +..+|..+-.++.+.++|.-.|...-.
T Consensus 311 ----GIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~Nr--------LiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 311 ----GIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNR--------LITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ----chhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccc--------eeechhhhhhcCCcceeeccCCcCccC
Confidence 1135667777777766 455578999999999988776654 345777778888888899888865544
Q ss_pred cc
Q 042559 495 PS 496 (547)
Q Consensus 495 ~~ 496 (547)
|.
T Consensus 378 PP 379 (1255)
T KOG0444|consen 378 PP 379 (1255)
T ss_pred CC
Confidence 43
No 33
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=7.8e-05 Score=69.04 Aligned_cols=69 Identities=23% Similarity=0.156 Sum_probs=51.5
Q ss_pred CCcceEEeecc-CCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHH
Q 042559 340 PNLTSMALRGF-KLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEV 411 (547)
Q Consensus 340 ~~L~~L~L~~~-~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l 411 (547)
+.|+.|.+..| .+.|.++..+....++|+.|+|++|++||+.++..|.++++ |+.|.|.+.+.+...+.
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn---Lr~L~l~~l~~v~~~e~ 194 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN---LRRLHLYDLPYVANLEL 194 (221)
T ss_pred chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh---hHHHHhcCchhhhchHH
Confidence 33444444444 56677777777778889999999999999999998888776 88888888776655544
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.45 E-value=7.6e-05 Score=84.05 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=15.2
Q ss_pred ecCCCCCcccccccccccccc
Q 042559 470 EFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 470 ~~p~~~~~~~~~~~l~~~~n~ 490 (547)
.+|...+.+..+..+++..|.
T Consensus 436 ~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 436 RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccChHHhhccCCCeEECCCCC
Confidence 567766667777778887774
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.32 E-value=0.00018 Score=81.08 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=56.4
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
.++|++|+|++| .++. +. ...++|+.|+++++. ++ .+ .....+|+.|++++|. ++. ++
T Consensus 241 p~~Lk~LdLs~N-~Lts--LP---~lp~sL~~L~Ls~N~-L~--~L---p~lp~~L~~L~Ls~N~-Lt~--LP------- 298 (788)
T PRK15387 241 PPELRTLEVSGN-QLTS--LP---VLPPGLLELSIFSNP-LT--HL---PALPSGLCKLWIFGNQ-LTS--LP------- 298 (788)
T ss_pred CCCCcEEEecCC-ccCc--cc---CcccccceeeccCCc-hh--hh---hhchhhcCEEECcCCc-ccc--cc-------
Confidence 456777777766 3331 21 224567777776652 22 11 1223457777777764 221 11
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCC
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDC 403 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C 403 (547)
...++|+.|++++|.++.- ..+ ...|+.|++++| .++. +...+ .+|++|+|+++
T Consensus 299 -~~p~~L~~LdLS~N~L~~L--p~l---p~~L~~L~Ls~N-~L~~-----LP~lp--~~Lq~LdLS~N 352 (788)
T PRK15387 299 -VLPPGLQELSVSDNQLASL--PAL---PSELCKLWAYNN-QLTS-----LPTLP--SGLQELSVSDN 352 (788)
T ss_pred -ccccccceeECCCCccccC--CCC---cccccccccccC-cccc-----ccccc--cccceEecCCC
Confidence 1236788888887766531 111 234555666555 4432 11111 14666666653
No 36
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.29 E-value=5.4e-05 Score=83.86 Aligned_cols=128 Identities=20% Similarity=0.171 Sum_probs=67.2
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecC--CCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGL--HVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c--~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
+.|+.|.+.++ .++|..++. +.+.++|+.|+|+++ ..+.+..+ .+++.|+.|+++|++ ++. +..
T Consensus 359 ~~Lq~LylanN-~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNk-L~~-------Lp~ 424 (1081)
T KOG0618|consen 359 AALQELYLANN-HLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNK-LTT-------LPD 424 (1081)
T ss_pred HHHHHHHHhcC-cccccchhh-hccccceeeeeecccccccCCHHHH----hchHHhHHHhcccch-hhh-------hhH
Confidence 34555555555 455554433 345566666666665 33444444 455666666666664 111 112
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCC
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMH 405 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~ 405 (547)
-+.+|+.|++|...+|.+.-.. .+++ ++.|+.+|++.+ +++...+......+ +|++|++++..+
T Consensus 425 tva~~~~L~tL~ahsN~l~~fP--e~~~-l~qL~~lDlS~N-~L~~~~l~~~~p~p---~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLLSFP--ELAQ-LPQLKVLDLSCN-NLSEVTLPEALPSP---NLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhhhhHHHhhcCCceeech--hhhh-cCcceEEecccc-hhhhhhhhhhCCCc---ccceeeccCCcc
Confidence 4455666666666665443222 3332 566666666655 55554444333223 366666666553
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.28 E-value=0.00032 Score=69.27 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=45.3
Q ss_pred CCCCCCC----hHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCcccccccc
Q 042559 120 FLAWPLP----PDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYANIDLRT 169 (547)
Q Consensus 120 ~~~~~LP----~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~~vdL~~ 169 (547)
..+..|| +++...||+||+..+++.|-.|||+|+++..++.+|+.+-..+
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~ 126 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERM 126 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 4488999 9999999999999999999999999999999999999875443
No 38
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.26 E-value=0.00014 Score=71.33 Aligned_cols=46 Identities=30% Similarity=0.431 Sum_probs=41.4
Q ss_pred CCCCChHhHHHhccC-----CCHHHHHHHHHHhHHHHHHhcCCCCcccccc
Q 042559 122 AWPLPPDLTIKVFSM-----LDTQSLCHAAATCSMFNKFAMDPLCYANIDL 167 (547)
Q Consensus 122 ~~~LP~elL~~IFs~-----L~~~dl~~~a~VCk~W~~l~~d~~lw~~vdL 167 (547)
|..||||||..||.. |+.+++.+++.|||.|+.++.+|.+|+..=+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 688999999999964 5789999999999999999999999997644
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.99 E-value=0.00029 Score=68.92 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=74.7
Q ss_pred CCccEEEEecCCCCC--HHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHH
Q 042559 283 PSLLDLEIVGLHVEL--RQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRIL 360 (547)
Q Consensus 283 ~~L~~L~Ls~c~~i~--~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l 360 (547)
..|++|+|+++. ++ ++.+ +-.|+++.|+++.+.-.+-. -+..+++|++|+|++|.++. +..+
T Consensus 284 q~LtelDLS~N~-I~~iDESv----KL~Pkir~L~lS~N~i~~v~---------nLa~L~~L~~LDLS~N~Ls~--~~Gw 347 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESV----KLAPKLRRLILSQNRIRTVQ---------NLAELPQLQLLDLSGNLLAE--CVGW 347 (490)
T ss_pred hhhhhccccccc-hhhhhhhh----hhccceeEEeccccceeeeh---------hhhhcccceEeecccchhHh--hhhh
Confidence 447777777652 21 2333 45678888888877532222 24457788888888876543 2223
Q ss_pred HhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCc
Q 042559 361 LKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLA 438 (547)
Q Consensus 361 ~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~ 438 (547)
-..+-+++.|.|+++ .|.+ +..|.+ +-+|..|++++. ++...+-.+ -.|+++.|++|.+.+|+.-.
T Consensus 348 h~KLGNIKtL~La~N-~iE~--LSGL~K---LYSLvnLDl~~N-~Ie~ldeV~-----~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQN-KIET--LSGLRK---LYSLVNLDLSSN-QIEELDEVN-----HIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred HhhhcCEeeeehhhh-hHhh--hhhhHh---hhhheecccccc-chhhHHHhc-----ccccccHHHHHhhcCCCccc
Confidence 334667888888776 3321 223333 234888888873 444332211 13577888888888887543
No 40
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.95 E-value=0.00064 Score=76.91 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=46.0
Q ss_pred CccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCC
Q 042559 394 LLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPS 473 (547)
Q Consensus 394 ~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~ 473 (547)
+|+.|++++|. ++...- .-+++|+.|+|++|.. +..++.+ .++|+.|.+..+. + ..+|.
T Consensus 326 sL~~L~Ls~N~-Lt~LP~---------~l~~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N~-------L-t~LP~ 384 (754)
T PRK15370 326 GLKTLEAGENA-LTSLPA---------SLPPELQVLDVSKNQI-TVLPETL--PPTITTLDVSRNA-------L-TNLPE 384 (754)
T ss_pred cceeccccCCc-cccCCh---------hhcCcccEEECCCCCC-CcCChhh--cCCcCEEECCCCc-------C-CCCCH
Confidence 47888887763 332111 1246888999988853 3433333 2466666665543 1 13444
Q ss_pred CCCcccccccccccccccCccccccc
Q 042559 474 EGSFIDIEQMVDSEFNSEISLPSQLS 499 (547)
Q Consensus 474 ~~~~~~~~~~l~~~~n~~~~~~~~~~ 499 (547)
... ..+..++...|....+|..+.
T Consensus 385 ~l~--~sL~~LdLs~N~L~~LP~sl~ 408 (754)
T PRK15370 385 NLP--AALQIMQASRNNLVRLPESLP 408 (754)
T ss_pred hHH--HHHHHHhhccCCcccCchhHH
Confidence 322 245567777776556665543
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.0024 Score=62.61 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=61.8
Q ss_pred hHHHHhhCCCCCccCcCcCCCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEe
Q 042559 237 SFILTRSCLNPLSGESGAAGSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFF 316 (547)
Q Consensus 237 ~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L 316 (547)
...+...|. .++.|+|.++..-....+..+..++|.|+.|+|+.+.-.++ +..+..-..+|++|.|
T Consensus 63 ~~~~~~~~~------------~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 63 VMLFGSSVT------------DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLPLPLKNLRVLVL 128 (418)
T ss_pred HHHHHHHhh------------hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--cccCcccccceEEEEE
Confidence 345667776 68999999986666677888899999999999987543322 2111112346888888
Q ss_pred cCCCCCCCCcCCCcchHHHhcCCCCcceEEeecc
Q 042559 317 ESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGF 350 (547)
Q Consensus 317 ~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~ 350 (547)
.|.. + ....+..+....|.+++|.++.|
T Consensus 129 NgT~-L-----~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 129 NGTG-L-----SWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCCC-C-----Chhhhhhhhhcchhhhhhhhccc
Confidence 7653 1 11122346667777787777765
No 42
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.82 E-value=0.00021 Score=76.62 Aligned_cols=97 Identities=18% Similarity=0.131 Sum_probs=43.9
Q ss_pred CCCcceEEeeccCCCHHHHHHHHhc---CCC-CcEEeccCCCCCCHHHHHHHHc-CCCC-CCccEEeeeCCCCCCHHHHH
Q 042559 339 CPNLTSMALRGFKLPDYKIRILLKG---FRK-LKYVDFSTSYSITGAFLRNLGS-GTGG-NLLEVLILRDCMHLKEVEVA 412 (547)
Q Consensus 339 ~~~L~~L~L~~~~ltd~~l~~l~~~---~~~-L~~L~Ls~c~~lt~~~l~~L~~-~~~l-~~L~~L~Ls~C~~L~~~~l~ 412 (547)
..++++|++.+|.+++.....+... .+. +..|++..+ .+.|.+++.+.. .... ..+++++++.|. +++.++.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~ 280 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVR 280 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchH
Confidence 3445555555555555443333222 222 444555555 555555555444 2222 245566666543 3333332
Q ss_pred HHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 413 RFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 413 ~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
..... +. .|+.++.|.++.|+....
T Consensus 281 ~L~~~-l~-~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 281 DLAEV-LV-SCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHH-Hh-hhHHHHHhhcccCccccH
Confidence 22221 11 345566666665554433
No 43
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.80 E-value=0.00067 Score=76.75 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=37.9
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccchhh
Q 042559 365 RKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASEGDW 443 (547)
Q Consensus 365 ~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~ 443 (547)
++|+.|++++| .++. ....+ + ++|+.|+|++|. ++.... . -.++|+.|+|++|.. +..+..
T Consensus 325 ~sL~~L~Ls~N-~Lt~-LP~~l--~---~sL~~L~Ls~N~-L~~LP~-----~----lp~~L~~LdLs~N~L-t~LP~~ 385 (754)
T PRK15370 325 PGLKTLEAGEN-ALTS-LPASL--P---PELQVLDVSKNQ-ITVLPE-----T----LPPTITTLDVSRNAL-TNLPEN 385 (754)
T ss_pred ccceeccccCC-cccc-CChhh--c---CcccEEECCCCC-CCcCCh-----h----hcCCcCEEECCCCcC-CCCCHh
Confidence 57888888887 5553 11112 1 359999999974 442211 0 136899999999964 343433
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.77 E-value=0.00031 Score=52.93 Aligned_cols=59 Identities=27% Similarity=0.384 Sum_probs=30.3
Q ss_pred CCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCC
Q 042559 309 PLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTS 375 (547)
Q Consensus 309 ~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c 375 (547)
|+|++|++++|. ++...- .....+++|++|++++|.++.-... ...++++|++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~~------~~f~~l~~L~~L~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPP------DSFSNLPNLETLDLSNNNLTSIPPD-AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECT------TTTTTGTTESEEEETSSSESEEETT-TTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCH------HHHcCCCCCCEeEccCCccCccCHH-HHcCCCCCCEEeCcCC
Confidence 456666666552 222111 1344566666666666655432221 2334666666666665
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.76 E-value=0.00048 Score=67.38 Aligned_cols=126 Identities=19% Similarity=0.180 Sum_probs=88.0
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
..-|+.|+|+++. |+ .+..-..-.|.++.|+++.+.-..-..+ ..+++|..|+++++..-... .+
T Consensus 283 Wq~LtelDLS~N~-I~--~iDESvKL~Pkir~L~lS~N~i~~v~nL----a~L~~L~~LDLS~N~Ls~~~--------Gw 347 (490)
T KOG1259|consen 283 WQELTELDLSGNL-IT--QIDESVKLAPKLRRLILSQNRIRTVQNL----AELPQLQLLDLSGNLLAECV--------GW 347 (490)
T ss_pred Hhhhhhccccccc-hh--hhhhhhhhccceeEEeccccceeeehhh----hhcccceEeecccchhHhhh--------hh
Confidence 3568999999883 33 2334456679999999999854444444 67899999999988622111 13
Q ss_pred hcCCCCcceEEeeccCCCH-HHHHHHHhcCCCCcEEeccCCCCCCH-HHHHHHHcCCCCCCccEEeeeCCC
Q 042559 336 VNNCPNLTSMALRGFKLPD-YKIRILLKGFRKLKYVDFSTSYSITG-AFLRNLGSGTGGNLLEVLILRDCM 404 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd-~~l~~l~~~~~~L~~L~Ls~c~~lt~-~~l~~L~~~~~l~~L~~L~Ls~C~ 404 (547)
-..+-|+++|.|++|.+.+ .|+.. +-.|.+||++++ +|.. +.+..++++|. |++|.|.+.+
T Consensus 348 h~KLGNIKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N-~Ie~ldeV~~IG~LPC---LE~l~L~~NP 410 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIETLSGLRK----LYSLVNLDLSSN-QIEELDEVNHIGNLPC---LETLRLTGNP 410 (490)
T ss_pred HhhhcCEeeeehhhhhHhhhhhhHh----hhhheecccccc-chhhHHHhcccccccH---HHHHhhcCCC
Confidence 3456789999999987643 23333 446999999998 6653 34556666665 9999999876
No 46
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.69 E-value=0.0019 Score=39.59 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=17.2
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHc
Q 042559 364 FRKLKYVDFSTSYSITGAFLRNLGS 388 (547)
Q Consensus 364 ~~~L~~L~Ls~c~~lt~~~l~~L~~ 388 (547)
|++|++|+|++|.+|||.++.++++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5667777777777777777766653
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.31 E-value=0.00026 Score=76.71 Aligned_cols=21 Identities=24% Similarity=0.166 Sum_probs=14.1
Q ss_pred CccEEEEeCCCCCCHHHHHHH
Q 042559 258 LLRRLHLYNIERMDNASLSMA 278 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l 278 (547)
.|++|.|.+|..-+..++..+
T Consensus 110 sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 110 SLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred ceeeEEecCcchhhhhhhHHH
Confidence 589999998866554444433
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.29 E-value=0.00023 Score=53.68 Aligned_cols=38 Identities=29% Similarity=0.416 Sum_probs=19.9
Q ss_pred CCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCC
Q 042559 340 PNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSIT 379 (547)
Q Consensus 340 ~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt 379 (547)
|+|++|++++|+++.-.. ....++++|++|+|++| .++
T Consensus 1 p~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N-~l~ 38 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNN-NLT 38 (61)
T ss_dssp TTESEEEETSSTESEECT-TTTTTGTTESEEEETSS-SES
T ss_pred CcCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCC-ccC
Confidence 456666666665443211 12234566666666665 443
No 49
>PLN03150 hypothetical protein; Provisional
Probab=96.26 E-value=0.006 Score=68.25 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=64.9
Q ss_pred ccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCC
Q 042559 311 LERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGT 390 (547)
Q Consensus 311 L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~ 390 (547)
++.|+|+++. +.. .+. ..+..+++|+.|+|++|.++......+ ..+++|+.|+|++| .+++.....++.++
T Consensus 420 v~~L~L~~n~-L~g-~ip-----~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N-~lsg~iP~~l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQG-LRG-FIP-----NDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYN-SFNGSIPESLGQLT 490 (623)
T ss_pred EEEEECCCCC-ccc-cCC-----HHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCC-CCCCCCchHHhcCC
Confidence 5667776654 211 112 355667788888888877665433334 34778888888887 77776666676665
Q ss_pred CCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 391 GGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 391 ~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
+ |++|+|++|. ++..-- ..+. +...++..+++.+|..+..
T Consensus 491 ~---L~~L~Ls~N~-l~g~iP-~~l~----~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 491 S---LRILNLNGNS-LSGRVP-AALG----GRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred C---CCEEECcCCc-ccccCC-hHHh----hccccCceEEecCCccccC
Confidence 5 8888888754 221100 0000 1123456677777765544
No 50
>PLN03150 hypothetical protein; Provisional
Probab=96.24 E-value=0.0078 Score=67.32 Aligned_cols=106 Identities=11% Similarity=0.094 Sum_probs=68.8
Q ss_pred ccEEEEecCCC--CCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHh
Q 042559 285 LLDLEIVGLHV--ELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLK 362 (547)
Q Consensus 285 L~~L~Ls~c~~--i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~ 362 (547)
++.|+|+++.- .....+ ..+++|+.|+|++|. +.. .++ ..+..+++|+.|+|++|.++......+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i----~~L~~L~~L~Ls~N~-l~g-~iP-----~~~~~l~~L~~LdLs~N~lsg~iP~~l~- 487 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI----SKLRHLQSINLSGNS-IRG-NIP-----PSLGSITSLEVLDLSYNSFNGSIPESLG- 487 (623)
T ss_pred EEEEECCCCCccccCCHHH----hCCCCCCEEECCCCc-ccC-cCC-----hHHhCCCCCCEEECCCCCCCCCCchHHh-
Confidence 56666666521 112222 567888888888875 221 122 3567788899999998877765555554
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCC
Q 042559 363 GFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMH 405 (547)
Q Consensus 363 ~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~ 405 (547)
.+++|++|+|++| .+++..+..+.... .++..+++.++..
T Consensus 488 ~L~~L~~L~Ls~N-~l~g~iP~~l~~~~--~~~~~l~~~~N~~ 527 (623)
T PLN03150 488 QLTSLRILNLNGN-SLSGRVPAALGGRL--LHRASFNFTDNAG 527 (623)
T ss_pred cCCCCCEEECcCC-cccccCChHHhhcc--ccCceEEecCCcc
Confidence 4888999999888 77777766665521 1367777776543
No 51
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.10 E-value=0.0049 Score=37.73 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=12.6
Q ss_pred CCCccEEEEecCCCCCHHHHHHHH
Q 042559 282 CPSLLDLEIVGLHVELRQTLMSVS 305 (547)
Q Consensus 282 ~~~L~~L~Ls~c~~i~~~~l~~l~ 305 (547)
||+|++|+|++|..+++.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 445555555555555555554443
No 52
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.00 E-value=0.0035 Score=63.74 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=20.8
Q ss_pred cCCCCCccEEeeeCCCCCccchhhhccCCCCCcc
Q 042559 420 TGDFKFLRHLDISNREGLASEGDWYDRCFNSRII 453 (547)
Q Consensus 420 ~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l 453 (547)
..++..|+.|+|++|...+-++..+.....|..+
T Consensus 318 f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred hhccccceeeeecCCeeEEEecccccccceeeee
Confidence 3467888888888886555455544444444333
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.93 E-value=0.0023 Score=61.76 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=31.7
Q ss_pred CCCcceEEeeccCCC-HHHHHHHHhcCCCCcEEeccCCCCCCH-HHHHHHHcCCCCCCccEEeeeCCC
Q 042559 339 CPNLTSMALRGFKLP-DYKIRILLKGFRKLKYVDFSTSYSITG-AFLRNLGSGTGGNLLEVLILRDCM 404 (547)
Q Consensus 339 ~~~L~~L~L~~~~lt-d~~l~~l~~~~~~L~~L~Ls~c~~lt~-~~l~~L~~~~~l~~L~~L~Ls~C~ 404 (547)
+|+|+.|.++.|... ..++..++..||+|++|+++++ .|.+ ..+..+.... +|..|++.+|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~---nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELE---NLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhc---chhhhhcccCC
Confidence 445566665555111 2344455555666666666666 4443 1222233333 37777777765
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.84 E-value=0.00038 Score=75.42 Aligned_cols=84 Identities=26% Similarity=0.246 Sum_probs=48.6
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
.-.|.|++|+|+.|++++.. .| +.|++|++|||+.+ .++-. ..++. .-..|+.|+|+++.--+-.++
T Consensus 184 qll~ale~LnLshNk~~~v~--~L-r~l~~LkhLDlsyN-~L~~v--p~l~~--~gc~L~~L~lrnN~l~tL~gi----- 250 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD--NL-RRLPKLKHLDLSYN-CLRHV--PQLSM--VGCKLQLLNLRNNALTTLRGI----- 250 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH--HH-Hhcccccccccccc-hhccc--cccch--hhhhheeeeecccHHHhhhhH-----
Confidence 34567888888888776644 33 35888888888877 33221 11111 001277777776421111222
Q ss_pred HhhcCCCCCccEEeeeCCCCC
Q 042559 417 AVLTGDFKFLRHLDISNREGL 437 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l 437 (547)
.++++|+.||+++|-..
T Consensus 251 ----e~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 251 ----ENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred ----HhhhhhhccchhHhhhh
Confidence 25677888888777443
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.75 E-value=0.0015 Score=63.02 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=55.2
Q ss_pred cCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCH-HHHHH
Q 042559 281 ACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPD-YKIRI 359 (547)
Q Consensus 281 ~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd-~~l~~ 359 (547)
....|+.|.+.++...+...+ -.+|+|++|.++.+..--...+. .++..||+|++|++++|++.+ ..+..
T Consensus 41 ~~~~le~ls~~n~gltt~~~~----P~Lp~LkkL~lsdn~~~~~~~l~-----vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNF----PKLPKLKKLELSDNYRRVSGGLE-----VLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccchhhhhhhccceeecccC----CCcchhhhhcccCCcccccccce-----ehhhhCCceeEEeecCCccccccccch
Confidence 344566666666654444444 45678888888877322223333 266778999999999987775 33333
Q ss_pred HHhcCCCCcEEeccCC
Q 042559 360 LLKGFRKLKYVDFSTS 375 (547)
Q Consensus 360 l~~~~~~L~~L~Ls~c 375 (547)
+. .+.+|..|++..|
T Consensus 112 l~-~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 112 LK-ELENLKSLDLFNC 126 (260)
T ss_pred hh-hhcchhhhhcccC
Confidence 43 3778888898888
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.0039 Score=60.67 Aligned_cols=105 Identities=20% Similarity=0.149 Sum_probs=55.8
Q ss_pred CCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHc
Q 042559 309 PLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGS 388 (547)
Q Consensus 309 ~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~ 388 (547)
.+.++|++.||. ++|. .+...+|.|+.|.|+-|+|+. +..+. .|.+|++|.|..+ .|.+ +.+|.-
T Consensus 19 ~~vkKLNcwg~~-L~DI--------sic~kMp~lEVLsLSvNkIss--L~pl~-rCtrLkElYLRkN-~I~s--ldEL~Y 83 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDI--------SICEKMPLLEVLSLSVNKISS--LAPLQ-RCTRLKELYLRKN-CIES--LDELEY 83 (388)
T ss_pred HHhhhhcccCCC-ccHH--------HHHHhcccceeEEeecccccc--chhHH-HHHHHHHHHHHhc-cccc--HHHHHH
Confidence 456677777765 3332 245566777777777766643 22332 3777777777766 4543 333443
Q ss_pred CCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEe
Q 042559 389 GTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLD 430 (547)
Q Consensus 389 ~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~ 430 (547)
+.++++|+.|+|..++-....+- ++-..++ .-+++|++||
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~-nYR~~VL-R~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQ-NYRRKVL-RVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccch-hHHHHHH-HHcccchhcc
Confidence 44444577777765443333332 1111111 2466666664
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.49 E-value=0.011 Score=41.30 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=16.4
Q ss_pred CcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCC
Q 042559 341 NLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSIT 379 (547)
Q Consensus 341 ~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt 379 (547)
+|++|++++|++++- .....++++|++|++++| .|+
T Consensus 2 ~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL--PPELSNLPNLETLNLSNN-PIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSS-CCS
T ss_pred cceEEEccCCCCccc--CchHhCCCCCCEEEecCC-CCC
Confidence 455555555555432 221234555555555555 443
No 58
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.48 E-value=0.017 Score=66.78 Aligned_cols=25 Identities=12% Similarity=-0.089 Sum_probs=18.2
Q ss_pred CCCccEEeeeCCCCCccchhhhccC
Q 042559 423 FKFLRHLDISNREGLASEGDWYDRC 447 (547)
Q Consensus 423 ~~~L~~L~Ls~c~~l~~~~~~l~~c 447 (547)
.++|+.|.+.+|..+.+........
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~ 793 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKAL 793 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHh
Confidence 5789999999998888854444333
No 59
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.35 E-value=0.00014 Score=73.65 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=41.3
Q ss_pred CCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCccccccc
Q 042559 421 GDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEISLPSQLS 499 (547)
Q Consensus 421 ~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~~~~~~~ 499 (547)
.++++|..||+..|+ +++.++.+.-..+|+++.+..+. +..+|.+.|.+ -+..+..+.|..-++...+.
T Consensus 249 ~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~--------is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND--------ISSLPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred cccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc--------cccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 467777788887774 44555666556666666665543 34566666666 45556666665444444443
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.0035 Score=60.94 Aligned_cols=117 Identities=21% Similarity=0.144 Sum_probs=80.5
Q ss_pred CCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHH
Q 042559 282 CPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILL 361 (547)
Q Consensus 282 ~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~ 361 (547)
+.+.+.|+..+| .+++..+ ....|.|+.|.|+-|.- ..+ +-+..|.+|++|.|..|.|.+-.-..-.
T Consensus 18 l~~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvNkI---ssL------~pl~rCtrLkElYLRkN~I~sldEL~YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVNKI---SSL------APLQRCTRLKELYLRKNCIESLDELEYL 84 (388)
T ss_pred HHHhhhhcccCC-CccHHHH---HHhcccceeEEeecccc---ccc------hhHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 456789999999 6777655 36789999999997652 122 2566799999999999988776544555
Q ss_pred hcCCCCcEEeccCCCCCCHHHHH----HHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHH
Q 042559 362 KGFRKLKYVDFSTSYSITGAFLR----NLGSGTGGNLLEVLILRDCMHLKEVEVARFLTA 417 (547)
Q Consensus 362 ~~~~~L~~L~Ls~c~~lt~~~l~----~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~ 417 (547)
+++|+|+.|-|..++.....+-. .|-.+++ |+.|+ ...++..++...+..
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn---LkKLD---nv~VteeEle~ALr~ 138 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN---LKKLD---NVPVTEEELEEALRD 138 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHccc---chhcc---CccccHHHHHHHHhc
Confidence 78999999999876444332221 1222555 77665 345777877666654
No 61
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.23 E-value=0.005 Score=66.14 Aligned_cols=172 Identities=23% Similarity=0.207 Sum_probs=111.0
Q ss_pred CccEEEEeCCCCCCHHHHHHH---HhcCCCccEEEEecCCCCCHHHHHHHHh-------cCCCccEEEecCCCCCCCCcC
Q 042559 258 LLRRLHLYNIERMDNASLSMA---LSACPSLLDLEIVGLHVELRQTLMSVSM-------SCPLLERLFFESSKTGRDDSL 327 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l---~~~~~~L~~L~Ls~c~~i~~~~l~~l~~-------~~~~L~~L~L~~c~~l~~~~l 327 (547)
.|++|.+..| .+++.+...+ ...+..|+.++++.|... ..+...+.. ...++++|.+.+|. ++....
T Consensus 145 ~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c 221 (478)
T KOG4308|consen 145 LLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSC 221 (478)
T ss_pred HHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHH
Confidence 4777888887 4554443333 334677888888887544 444333332 23458999999886 222221
Q ss_pred CCcchHHHhcCCCC-cceEEeeccCCCHHHHHHHHhcCC----CCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEEeee
Q 042559 328 KSPTCVDFVNNCPN-LTSMALRGFKLPDYKIRILLKGFR----KLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVLILR 401 (547)
Q Consensus 328 ~~~~l~~~~~~~~~-L~~L~L~~~~ltd~~l~~l~~~~~----~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls 401 (547)
. .+...+...+. +..|++..|.+.|.++..+...++ .++.++++.| .|++.+...++. ...+..+++|.+.
T Consensus 222 ~--~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~ 298 (478)
T KOG4308|consen 222 A--LLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLS 298 (478)
T ss_pred H--HHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcc
Confidence 1 22334455565 777999999999998888776554 4589999999 899888888776 4444569999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCc
Q 042559 402 DCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLA 438 (547)
Q Consensus 402 ~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~ 438 (547)
+ +.+.+.++...+... . ....+.++-+.++...+
T Consensus 299 ~-n~l~~~~~~~~~~~l-~-~~~~~~~~~l~~~~~~~ 332 (478)
T KOG4308|consen 299 N-NPLTDYGVELLLEAL-E-RKTPLLHLVLGGTGKGT 332 (478)
T ss_pred c-CccccHHHHHHHHHh-h-hcccchhhhccccCccc
Confidence 7 567777775554442 2 23445555565544433
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.21 E-value=0.023 Score=62.02 Aligned_cols=44 Identities=25% Similarity=0.408 Sum_probs=39.1
Q ss_pred CCCCCCChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCcc
Q 042559 120 FLAWPLPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYA 163 (547)
Q Consensus 120 ~~~~~LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~ 163 (547)
..+..||.|+..+||.||+.++++.+++||+.|+.++.+-..|.
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 44889999999999999999999999999999999987655444
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.92 E-value=0.041 Score=57.51 Aligned_cols=135 Identities=15% Similarity=0.091 Sum_probs=64.5
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
++++|++++| .++. ++ ..-++|++|.+.+|..++... . .-.++|++|.+.+|..+.. +
T Consensus 53 ~l~~L~Is~c-~L~s--LP---~LP~sLtsL~Lsnc~nLtsLP--~--~LP~nLe~L~Ls~Cs~L~s--L---------- 110 (426)
T PRK15386 53 ASGRLYIKDC-DIES--LP---VLPNELTEITIENCNNLTTLP--G--SIPEGLEKLTVCHCPEISG--L---------- 110 (426)
T ss_pred CCCEEEeCCC-CCcc--cC---CCCCCCcEEEccCCCCcccCC--c--hhhhhhhheEccCcccccc--c----------
Confidence 5778888777 3321 22 222357788887776542211 0 0124677888877754321 1
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHH
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTA 417 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~ 417 (547)
-++|+.|++.++.... +..+ -++|+.|.+.++.......+. ..+| .+|++|.+++|..+.-.+
T Consensus 111 -P~sLe~L~L~~n~~~~--L~~L---PssLk~L~I~~~n~~~~~~lp--~~LP--sSLk~L~Is~c~~i~LP~------- 173 (426)
T PRK15386 111 -PESVRSLEIKGSATDS--IKNV---PNGLTSLSINSYNPENQARID--NLIS--PSLKTLSLTGCSNIILPE------- 173 (426)
T ss_pred -ccccceEEeCCCCCcc--cccC---cchHhheeccccccccccccc--cccC--CcccEEEecCCCcccCcc-------
Confidence 1357777766543321 1111 134666666443211110000 0122 257777777776542110
Q ss_pred hhcCCCCCccEEeeeCC
Q 042559 418 VLTGDFKFLRHLDISNR 434 (547)
Q Consensus 418 ~l~~~~~~L~~L~Ls~c 434 (547)
+-..+|+.|.++.+
T Consensus 174 ---~LP~SLk~L~ls~n 187 (426)
T PRK15386 174 ---KLPESLQSITLHIE 187 (426)
T ss_pred ---cccccCcEEEeccc
Confidence 11246777776654
No 64
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.87 E-value=0.00093 Score=60.39 Aligned_cols=125 Identities=19% Similarity=0.164 Sum_probs=59.2
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCC-CCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLH-VELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~-~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
+|+.|+++++ .+. .+..-++.+|.|+.|++.... .+...|+ ..+|.|+.|++..+. +.+..++. -.
T Consensus 57 nlevln~~nn-qie--~lp~~issl~klr~lnvgmnrl~~lprgf----gs~p~levldltynn-l~e~~lpg-----nf 123 (264)
T KOG0617|consen 57 NLEVLNLSNN-QIE--ELPTSISSLPKLRILNVGMNRLNILPRGF----GSFPALEVLDLTYNN-LNENSLPG-----NF 123 (264)
T ss_pred hhhhhhcccc-hhh--hcChhhhhchhhhheecchhhhhcCcccc----CCCchhhhhhccccc-cccccCCc-----ch
Confidence 5666666665 322 244445566677777665432 2333444 556667777776553 33333332 12
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeC
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRD 402 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~ 402 (547)
..+..|+.|.++.+.+.- -...+. .+.+|+.|.+..+.-++ .+++++.+.. |++|.+.+
T Consensus 124 f~m~tlralyl~dndfe~-lp~dvg-~lt~lqil~lrdndll~--lpkeig~lt~---lrelhiqg 182 (264)
T KOG0617|consen 124 FYMTTLRALYLGDNDFEI-LPPDVG-KLTNLQILSLRDNDLLS--LPKEIGDLTR---LRELHIQG 182 (264)
T ss_pred hHHHHHHHHHhcCCCccc-CChhhh-hhcceeEEeeccCchhh--CcHHHHHHHH---HHHHhccc
Confidence 223345555555542210 001111 25556666666553222 1233444333 66666655
No 65
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.78 E-value=0.0011 Score=59.96 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=85.6
Q ss_pred CCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHc
Q 042559 309 PLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGS 388 (547)
Q Consensus 309 ~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~ 388 (547)
.++..|.+++++ ++. ++ .-+..+.+|+.|++.++++.+-. ..+. .+++|+.|++..+ .+. ..++.++.
T Consensus 33 s~ITrLtLSHNK-l~~--vp-----pnia~l~nlevln~~nnqie~lp-~~is-sl~klr~lnvgmn-rl~-~lprgfgs 100 (264)
T KOG0617|consen 33 SNITRLTLSHNK-LTV--VP-----PNIAELKNLEVLNLSNNQIEELP-TSIS-SLPKLRILNVGMN-RLN-ILPRGFGS 100 (264)
T ss_pred hhhhhhhcccCc-eee--cC-----CcHHHhhhhhhhhcccchhhhcC-hhhh-hchhhhheecchh-hhh-cCccccCC
Confidence 445666676664 211 11 13445667888888777664322 2233 4777888877655 221 11223333
Q ss_pred CCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEE
Q 042559 389 GTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVL 468 (547)
Q Consensus 389 ~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~ 468 (547)
.+ -|++|+|.+ +++.+..+-..+. .+..|+.|.++.|..-- .+..++...+|+.+.++.+. +
T Consensus 101 ~p---~levldlty-nnl~e~~lpgnff-----~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdnd--------l 162 (264)
T KOG0617|consen 101 FP---ALEVLDLTY-NNLNENSLPGNFF-----YMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDND--------L 162 (264)
T ss_pred Cc---hhhhhhccc-cccccccCCcchh-----HHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCc--------h
Confidence 33 488888877 4455443311111 12346666676664311 22334566666666655543 2
Q ss_pred eecCCCCCcccccccccccccccCcccccc
Q 042559 469 AEFPSEGSFIDIEQMVDSEFNSEISLPSQL 498 (547)
Q Consensus 469 ~~~p~~~~~~~~~~~l~~~~n~~~~~~~~~ 498 (547)
-.+|.+++.++.+..+..-.|...-+|..+
T Consensus 163 l~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 163 LSLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred hhCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 346667777777766777777655566554
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.74 E-value=0.021 Score=53.30 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHH-HHHHHH
Q 042559 283 PSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDY-KIRILL 361 (547)
Q Consensus 283 ~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~-~l~~l~ 361 (547)
.+...++|+++.......+ .+++.|.+|.+.++. ++...- .+....|+|+.|.+.+|++..- .+..++
T Consensus 42 d~~d~iDLtdNdl~~l~~l----p~l~rL~tLll~nNr-It~I~p------~L~~~~p~l~~L~LtnNsi~~l~dl~pLa 110 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNL----PHLPRLHTLLLNNNR-ITRIDP------DLDTFLPNLKTLILTNNSIQELGDLDPLA 110 (233)
T ss_pred cccceecccccchhhcccC----CCccccceEEecCCc-ceeecc------chhhhccccceEEecCcchhhhhhcchhc
Confidence 3455666666543333333 556677888887765 332221 2455567788888888765443 233444
Q ss_pred hcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeC
Q 042559 362 KGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRD 402 (547)
Q Consensus 362 ~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~ 402 (547)
.||+|++|.+-++ .++...=...--...+++|++||.++
T Consensus 111 -~~p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 -SCPKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred -cCCccceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 3888888888777 44432211111112233477777765
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.29 E-value=0.011 Score=62.68 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=70.6
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
.+|+.|+++++..- .+..+...+++|++|+|++..-..-.++ ..++.|+.|++.+|.--.-. -.
T Consensus 95 ~~l~~l~l~~n~i~---~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~---------~~ 158 (414)
T KOG0531|consen 95 KSLEALDLYDNKIE---KIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDIS---------GL 158 (414)
T ss_pred cceeeeeccccchh---hcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhcc---------CC
Confidence 46889999887432 2333356789999999999855445556 45667999999988622211 12
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCC
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSY 376 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~ 376 (547)
..++.|+.++++++.+++..... ...+.+|+.+.+.++.
T Consensus 159 ~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 23778999999998776544311 3558889999998883
No 68
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.05 E-value=0.072 Score=61.66 Aligned_cols=18 Identities=17% Similarity=0.008 Sum_probs=12.2
Q ss_pred CCCCccEEeeeCCCCCcc
Q 042559 422 DFKFLRHLDISNREGLAS 439 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l~~ 439 (547)
.+.+|+.|.|.+|.....
T Consensus 715 ~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEI 732 (889)
T ss_pred cccCcceEEEEcCCCchh
Confidence 567777777777766533
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.86 E-value=0.063 Score=56.16 Aligned_cols=120 Identities=10% Similarity=0.031 Sum_probs=73.5
Q ss_pred hcCCCccEEEEecCCCCCHHHHHHHHhcCC-CccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeecc-CCCHHHH
Q 042559 280 SACPSLLDLEIVGLHVELRQTLMSVSMSCP-LLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGF-KLPDYKI 357 (547)
Q Consensus 280 ~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~-~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~-~ltd~~l 357 (547)
..|+++++|++++| .++.- . .+| +|++|.+.+|..++.. +. .+ .++|++|.+.+| .+.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sL-----P-~LP~sLtsL~Lsnc~nLtsL--P~-----~L--P~nLe~L~Ls~Cs~L~---- 108 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESL-----P-VLPNELTEITIENCNNLTTL--PG-----SI--PEGLEKLTVCHCPEIS---- 108 (426)
T ss_pred HHhcCCCEEEeCCC-CCccc-----C-CCCCCCcEEEccCCCCcccC--Cc-----hh--hhhhhheEccCccccc----
Confidence 45799999999999 33221 1 234 5999999999876332 21 11 357999999998 553
Q ss_pred HHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCC
Q 042559 358 RILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGL 437 (547)
Q Consensus 358 ~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l 437 (547)
.+ -+.|+.|+|.++ ... .+..+|. +|+.|.+.++.......+.. .-.++|++|++++|..+
T Consensus 109 -sL---P~sLe~L~L~~n-~~~-----~L~~LPs--sLk~L~I~~~n~~~~~~lp~-------~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 109 -GL---PESVRSLEIKGS-ATD-----SIKNVPN--GLTSLSINSYNPENQARIDN-------LISPSLKTLSLTGCSNI 169 (426)
T ss_pred -cc---ccccceEEeCCC-CCc-----ccccCcc--hHhheecccccccccccccc-------ccCCcccEEEecCCCcc
Confidence 12 246888888754 332 2334443 58888886543221111100 01368999999998765
Q ss_pred c
Q 042559 438 A 438 (547)
Q Consensus 438 ~ 438 (547)
.
T Consensus 170 ~ 170 (426)
T PRK15386 170 I 170 (426)
T ss_pred c
Confidence 3
No 70
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.84 E-value=0.077 Score=37.00 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=19.7
Q ss_pred CCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCC
Q 042559 309 PLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLP 353 (547)
Q Consensus 309 ~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~lt 353 (547)
++|++|++++|. +++ +. ..+.++++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N~-i~~--l~-----~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITD--LP-----PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS--SS--HG-----GHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCC-Ccc--cC-----chHhCCCCCCEEEecCCCCC
Confidence 356666666653 222 11 23556677777777766655
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.76 E-value=0.04 Score=32.88 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=11.0
Q ss_pred CCCcEEeccCCCCCCHHHHHHHH
Q 042559 365 RKLKYVDFSTSYSITGAFLRNLG 387 (547)
Q Consensus 365 ~~L~~L~Ls~c~~lt~~~l~~L~ 387 (547)
++|++|+|++| .|++.++.+|+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHhC
Confidence 45555555555 45555555554
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.73 E-value=0.042 Score=32.75 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=15.9
Q ss_pred CCCcceEEeeccCCCHHHHHHHH
Q 042559 339 CPNLTSMALRGFKLPDYKIRILL 361 (547)
Q Consensus 339 ~~~L~~L~L~~~~ltd~~l~~l~ 361 (547)
|++|++|+|++|.|+++++..|+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 56788888888888888887765
No 73
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.82 E-value=0.086 Score=54.44 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=33.4
Q ss_pred CCCCCChHhHHHhccCC-CHHHHHHHHHHhHHHHHHhc
Q 042559 121 LAWPLPPDLTIKVFSML-DTQSLCHAAATCSMFNKFAM 157 (547)
Q Consensus 121 ~~~~LP~elL~~IFs~L-~~~dl~~~a~VCk~W~~l~~ 157 (547)
.|..||+|+|..|..+| ...|+.+.+.|||.||..+.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 38899999999999999 46799999999999998764
No 74
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.12 E-value=0.08 Score=55.68 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=8.4
Q ss_pred hcCCCccEEEecCCC
Q 042559 306 MSCPLLERLFFESSK 320 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~ 320 (547)
..+++|+.|++++|.
T Consensus 160 ~~l~~L~~L~l~~N~ 174 (394)
T COG4886 160 RNLPNLKNLDLSFND 174 (394)
T ss_pred hccccccccccCCch
Confidence 455556666665554
No 75
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.95 E-value=0.18 Score=51.89 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=23.4
Q ss_pred HHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCC
Q 042559 334 DFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTS 375 (547)
Q Consensus 334 ~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c 375 (547)
..+...++|+.|++++|-+.+-..+ ++ .+..|+.|+|+.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~LP~e-~~-~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLNDLPEE-MG-SLVRLQTLNLSFN 468 (565)
T ss_pred HHHHhhhcceeeecccchhhhcchh-hh-hhhhhheeccccc
Confidence 4666777777777777644332221 11 2444777777776
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.61 E-value=0.14 Score=53.97 Aligned_cols=151 Identities=20% Similarity=0.221 Sum_probs=90.0
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|+.|+++++.. . .+..-...+++|+.|+++.+. +.+... .....+.|+.|.++++. +++ ++ ....
T Consensus 141 nL~~L~l~~N~i-~--~l~~~~~~l~~L~~L~l~~N~-l~~l~~--~~~~~~~L~~L~ls~N~-i~~--l~-----~~~~ 206 (394)
T COG4886 141 NLKELDLSDNKI-E--SLPSPLRNLPNLKNLDLSFND-LSDLPK--LLSNLSNLNNLDLSGNK-ISD--LP-----PEIE 206 (394)
T ss_pred hcccccccccch-h--hhhhhhhccccccccccCCch-hhhhhh--hhhhhhhhhheeccCCc-ccc--Cc-----hhhh
Confidence 689999988743 2 122335689999999999873 332221 11267889999999875 222 11 1223
Q ss_pred CCCCcceEEeeccC-CCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 338 NCPNLTSMALRGFK-LPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 338 ~~~~L~~L~L~~~~-ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
...+|++|.++++. +.... ....+.++..|.+.++ .+.+. ...++.++ .|+.|+++++ .+++...
T Consensus 207 ~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n-~~~~~-~~~~~~l~---~l~~L~~s~n-~i~~i~~----- 272 (394)
T COG4886 207 LLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNN-KLEDL-PESIGNLS---NLETLDLSNN-QISSISS----- 272 (394)
T ss_pred hhhhhhhhhhcCCcceecch---hhhhcccccccccCCc-eeeec-cchhcccc---ccceeccccc-ccccccc-----
Confidence 34558888888873 32211 1223566777776665 44331 22233344 3888998874 3443322
Q ss_pred HhhcCCCCCccEEeeeCCCCCcc
Q 042559 417 AVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
.+...+|+.|+++++.....
T Consensus 273 ---~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 273 ---LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ---ccccCccCEEeccCcccccc
Confidence 13678899999998876554
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.43 E-value=0.55 Score=29.15 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=14.1
Q ss_pred CCcceEEeeccCCCHHHHHHHHh
Q 042559 340 PNLTSMALRGFKLPDYKIRILLK 362 (547)
Q Consensus 340 ~~L~~L~L~~~~ltd~~l~~l~~ 362 (547)
++|++|+|++|.+++++...+++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 35666666666666666666554
No 78
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=87.97 E-value=0.22 Score=51.08 Aligned_cols=87 Identities=18% Similarity=0.100 Sum_probs=51.1
Q ss_pred hcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHH
Q 042559 306 MSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRN 385 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~ 385 (547)
+++|+|++|+++++. ++...- .......+|++|.|..|++.... ..+++++..|+.|+|.++ +||--...+
T Consensus 271 ~~L~~L~~lnlsnN~-i~~i~~------~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N-~it~~~~~a 341 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNK-ITRIED------GAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDN-QITTVAPGA 341 (498)
T ss_pred hhcccceEeccCCCc-cchhhh------hhhcchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCC-eeEEEeccc
Confidence 667778888887764 222111 13334566777888777653221 224556777888888887 776554444
Q ss_pred HHcCCCCCCccEEeeeCCC
Q 042559 386 LGSGTGGNLLEVLILRDCM 404 (547)
Q Consensus 386 L~~~~~l~~L~~L~Ls~C~ 404 (547)
+.... .|.+|+|-..+
T Consensus 342 F~~~~---~l~~l~l~~Np 357 (498)
T KOG4237|consen 342 FQTLF---SLSTLNLLSNP 357 (498)
T ss_pred ccccc---eeeeeehccCc
Confidence 43333 37777765433
No 79
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=87.80 E-value=0.27 Score=46.06 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=62.8
Q ss_pred CCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHH-HHHHH
Q 042559 308 CPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGA-FLRNL 386 (547)
Q Consensus 308 ~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~-~l~~L 386 (547)
..+...++|+++...... .+.+.+.|.+|.+..|+|+.-.. .+...+|+|+.|.|.++ +|-.- -+..+
T Consensus 41 ~d~~d~iDLtdNdl~~l~---------~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnN-si~~l~dl~pL 109 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD---------NLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNN-SIQELGDLDPL 109 (233)
T ss_pred ccccceecccccchhhcc---------cCCCccccceEEecCCcceeecc-chhhhccccceEEecCc-chhhhhhcchh
Confidence 445777888877543333 23357788999999887765321 23444788999999887 44322 13445
Q ss_pred HcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeC
Q 042559 387 GSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISN 433 (547)
Q Consensus 387 ~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~ 433 (547)
+.|+. |++|.+-+.+ +++..-+.. .....+++|+.||..+
T Consensus 110 a~~p~---L~~Ltll~Np-v~~k~~YR~---yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 ASCPK---LEYLTLLGNP-VEHKKNYRL---YVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccCCc---cceeeecCCc-hhcccCcee---EEEEecCcceEeehhh
Confidence 55554 8888777643 322221111 0112567777777654
No 80
>PF13013 F-box-like_2: F-box-like domain
Probab=87.70 E-value=0.54 Score=39.73 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=27.8
Q ss_pred CCCCCChHhHHHhccCCCHHHHHHHHHHhH
Q 042559 121 LAWPLPPDLTIKVFSMLDTQSLCHAAATCS 150 (547)
Q Consensus 121 ~~~~LP~elL~~IFs~L~~~dl~~~a~VCk 150 (547)
.+.+||+||+..||.|.+..++..+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 378899999999999999999999998888
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.50 E-value=0.31 Score=52.04 Aligned_cols=91 Identities=19% Similarity=0.099 Sum_probs=55.7
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
-+.+..++|+++....-+.+..+++..|+|+.|+|++.+.......+.-.-+...|++|.+.|++-.+........+.++
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 34677777777766666667777777888888888876322222211111223457788888877555544444455556
Q ss_pred hcCCCCcceEE
Q 042559 336 VNNCPNLTSMA 346 (547)
Q Consensus 336 ~~~~~~L~~L~ 346 (547)
...+|+|..||
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 66777776665
No 82
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=84.77 E-value=0.13 Score=55.08 Aligned_cols=130 Identities=16% Similarity=0.168 Sum_probs=75.6
Q ss_pred cCCCccEEEEecCCC-CCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHH
Q 042559 281 ACPSLLDLEIVGLHV-ELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRI 359 (547)
Q Consensus 281 ~~~~L~~L~Ls~c~~-i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~ 359 (547)
++..|+.|+|+.+.. ....++ -. --|+.|.+++++ ++.... -+...++|..|+.+.|.+..- ...
T Consensus 119 ~L~~lt~l~ls~NqlS~lp~~l----C~-lpLkvli~sNNk-l~~lp~-------~ig~~~tl~~ld~s~nei~sl-psq 184 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSHLPDGL----CD-LPLKVLIVSNNK-LTSLPE-------EIGLLPTLAHLDVSKNEIQSL-PSQ 184 (722)
T ss_pred hhhHHHHhhhccchhhcCChhh----hc-CcceeEEEecCc-cccCCc-------ccccchhHHHhhhhhhhhhhc-hHH
Confidence 344566666665421 111111 11 238888888775 322221 223567788888888755322 112
Q ss_pred HHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 360 LLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 360 l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
+. ++..|+.|.+..+ ++.+ .+.+++.++ |..||++ |+++....+ .| .+++.|++|-|.+|+.-..
T Consensus 185 l~-~l~slr~l~vrRn-~l~~-lp~El~~Lp----Li~lDfS-cNkis~iPv-~f------r~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 185 LG-YLTSLRDLNVRRN-HLED-LPEELCSLP----LIRLDFS-CNKISYLPV-DF------RKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hh-hHHHHHHHHHhhh-hhhh-CCHHHhCCc----eeeeecc-cCceeecch-hh------hhhhhheeeeeccCCCCCC
Confidence 22 3566788888776 4332 345555443 8888988 577776666 22 2577888998888876555
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.20 E-value=1.5 Score=47.07 Aligned_cols=67 Identities=25% Similarity=0.197 Sum_probs=34.2
Q ss_pred hcCCCCcceEEeeccCCCH-HHHHHHHhcCCCCcEEeccCCC--CCCHHHHHHHHcCCCCCCccEEeeeCCCCC
Q 042559 336 VNNCPNLTSMALRGFKLPD-YKIRILLKGFRKLKYVDFSTSY--SITGAFLRNLGSGTGGNLLEVLILRDCMHL 406 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd-~~l~~l~~~~~~L~~L~Ls~c~--~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L 406 (547)
..+.|.+..++|++|++.+ +.+..+++..|+|+.|+|+++. --++..+..+... .|++|.+.+.+-.
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l----~Leel~l~GNPlc 283 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL----PLEELVLEGNPLC 283 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC----CHHHeeecCCccc
Confidence 3344555555555553332 3455566667777777777761 1122222222222 2777777775543
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.09 E-value=1.5 Score=27.18 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.2
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHc
Q 042559 365 RKLKYVDFSTSYSITGAFLRNLGS 388 (547)
Q Consensus 365 ~~L~~L~Ls~c~~lt~~~l~~L~~ 388 (547)
++|++|+|++| .|++++...|+.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHH
Confidence 46888888888 888888877765
No 85
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=80.88 E-value=0.56 Score=49.83 Aligned_cols=107 Identities=22% Similarity=0.173 Sum_probs=67.2
Q ss_pred hcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHH
Q 042559 280 SACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRI 359 (547)
Q Consensus 280 ~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~ 359 (547)
..+.+|+.|++....-.. +..+...+++|++|+++++.-..-.+ +..++.|+.|++.+|.+++.. .
T Consensus 92 ~~~~~l~~l~l~~n~i~~---i~~~l~~~~~L~~L~ls~N~I~~i~~---------l~~l~~L~~L~l~~N~i~~~~--~ 157 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK---IENLLSSLVNLQVLDLSFNKITKLEG---------LSTLTLLKELNLSGNLISDIS--G 157 (414)
T ss_pred ccccceeeeeccccchhh---cccchhhhhcchheeccccccccccc---------hhhccchhhheeccCcchhcc--C
Confidence 456778888887653222 22213678999999999886322222 234566999999999776532 1
Q ss_pred HHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCC
Q 042559 360 LLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMH 405 (547)
Q Consensus 360 l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~ 405 (547)
+ ..++.|+.++++++ .+++.....+..+. .|+.+.+.+...
T Consensus 158 ~-~~l~~L~~l~l~~n-~i~~ie~~~~~~~~---~l~~l~l~~n~i 198 (414)
T KOG0531|consen 158 L-ESLKSLKLLDLSYN-RIVDIENDELSELI---SLEELDLGGNSI 198 (414)
T ss_pred C-ccchhhhcccCCcc-hhhhhhhhhhhhcc---chHHHhccCCch
Confidence 1 12778999999998 66554331023344 388888887543
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=80.73 E-value=0.82 Score=26.54 Aligned_cols=19 Identities=32% Similarity=0.329 Sum_probs=11.6
Q ss_pred CccEEeeeCCCCCccchhhh
Q 042559 425 FLRHLDISNREGLASEGDWY 444 (547)
Q Consensus 425 ~L~~L~Ls~c~~l~~~~~~l 444 (547)
+|++|+|++| .++..+..+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 4778888887 444544433
No 87
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=79.84 E-value=0.78 Score=40.51 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=23.3
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCC
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTS 375 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c 375 (547)
+....|.++.|++..+.+.+-..+ ++. +|.|+.|+++.+
T Consensus 72 ft~kf~t~t~lNl~~neisdvPeE-~Aa-m~aLr~lNl~~N 110 (177)
T KOG4579|consen 72 FTIKFPTATTLNLANNEISDVPEE-LAA-MPALRSLNLRFN 110 (177)
T ss_pred HhhccchhhhhhcchhhhhhchHH-Hhh-hHHhhhcccccC
Confidence 444555666666666666555444 332 666777777666
No 88
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=75.58 E-value=0.29 Score=43.09 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=58.2
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHH
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARF 414 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~ 414 (547)
.+....+|+..+|++|.+.+.. ..+...+|.++.|+++++ .|++. +.+++..+. |+.|+++..+-.....+
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp-~kft~kf~t~t~lNl~~n-eisdv-PeE~Aam~a---Lr~lNl~~N~l~~~p~v--- 118 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFP-KKFTIKFPTATTLNLANN-EISDV-PEELAAMPA---LRSLNLRFNPLNAEPRV--- 118 (177)
T ss_pred HHhCCceEEEEecccchhhhCC-HHHhhccchhhhhhcchh-hhhhc-hHHHhhhHH---hhhcccccCccccchHH---
Confidence 4455677888888888665433 244455788999999988 77764 455887776 99999998664333222
Q ss_pred HHHhhcCCCCCccEEeeeCCCCC
Q 042559 415 LTAVLTGDFKFLRHLDISNREGL 437 (547)
Q Consensus 415 l~~~l~~~~~~L~~L~Ls~c~~l 437 (547)
+. .+.+|-.|+.-++...
T Consensus 119 ----i~-~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 119 ----IA-PLIKLDMLDSPENARA 136 (177)
T ss_pred ----HH-HHHhHHHhcCCCCccc
Confidence 11 2455666766665443
No 89
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=70.74 E-value=3.4 Score=25.15 Aligned_cols=25 Identities=44% Similarity=0.664 Sum_probs=17.9
Q ss_pred ccEEEEeCCCCCCHHHHHHHHhcCC
Q 042559 259 LRRLHLYNIERMDNASLSMALSACP 283 (547)
Q Consensus 259 L~~L~L~~c~~lt~~~L~~l~~~~~ 283 (547)
||+|+|..+..-.+..+..+++.||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 7778887776555557777777776
No 90
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=69.74 E-value=3.4 Score=22.36 Aligned_cols=10 Identities=30% Similarity=0.590 Sum_probs=4.2
Q ss_pred CCcEEeccCC
Q 042559 366 KLKYVDFSTS 375 (547)
Q Consensus 366 ~L~~L~Ls~c 375 (547)
+|+.|+|++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444444
No 91
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=68.57 E-value=13 Score=30.62 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=23.2
Q ss_pred CCCCCCChHhHHHhccCCCHHHHHHH
Q 042559 120 FLAWPLPPDLTIKVFSMLDTQSLCHA 145 (547)
Q Consensus 120 ~~~~~LP~elL~~IFs~L~~~dl~~~ 145 (547)
..|..||.|+-.+|+++|+..|+...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 56999999999999999999998653
No 92
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=65.75 E-value=0.54 Score=50.56 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=18.8
Q ss_pred EeecCCCCCcccccccccccccccCccc
Q 042559 468 LAEFPSEGSFIDIEQMVDSEFNSEISLP 495 (547)
Q Consensus 468 ~~~~p~~~~~~~~~~~l~~~~n~~~~~~ 495 (547)
+.++|.....+.-++.+-++.|-..+-|
T Consensus 223 is~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 223 ISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred eeecchhhhhhhhheeeeeccCCCCCCh
Confidence 4567777777777777777777655544
No 93
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=63.57 E-value=1.3 Score=38.01 Aligned_cols=6 Identities=17% Similarity=0.484 Sum_probs=1.6
Q ss_pred ccEEEE
Q 042559 259 LRRLHL 264 (547)
Q Consensus 259 L~~L~L 264 (547)
|+.+.+
T Consensus 14 l~~i~~ 19 (129)
T PF13306_consen 14 LESITF 19 (129)
T ss_dssp --EEEE
T ss_pred CCEEEE
Confidence 444433
No 94
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=57.75 E-value=17 Score=36.90 Aligned_cols=42 Identities=14% Similarity=0.015 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcC
Q 042559 267 IERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSC 308 (547)
Q Consensus 267 c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~ 308 (547)
++...+..+..+-.+=|.|++.+|++...++...+..+...+
T Consensus 182 n~t~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal 223 (353)
T KOG3735|consen 182 NPTDVESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEAL 223 (353)
T ss_pred CCchHHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHH
Confidence 334446667777777788888888888778777766665543
No 95
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=45.48 E-value=18 Score=36.75 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHH---HHHHHHhcCCCCcEEe
Q 042559 295 VELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDY---KIRILLKGFRKLKYVD 371 (547)
Q Consensus 295 ~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~---~l~~l~~~~~~L~~L~ 371 (547)
......++.+-.+-|.|+..+|.+...+...-+.. ....+.+..+.+.+.+.+.+..|. .+..+.+.++.|+.|+
T Consensus 184 t~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~--~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~sln 261 (353)
T KOG3735|consen 184 TDVESSLERIKENDTGLTEVNLNNIRRIPIETLKQ--FSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLN 261 (353)
T ss_pred chHHHHHHHHhcCCCCceeeeccccccCCHHHHHH--HHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhhee
Confidence 44455677777777889999998776554332221 123445566777777877655553 4445566788999999
Q ss_pred ccCCCCCCHHHHHHHHc-CCCCCCccEEeeeC
Q 042559 372 FSTSYSITGAFLRNLGS-GTGGNLLEVLILRD 402 (547)
Q Consensus 372 Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls~ 402 (547)
+.++ .||+.++.++.. +....+|.+|.+.+
T Consensus 262 vesn-FItg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 262 VESN-FITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred cccc-ccccHHHHHHHHHHhccchhhHhhhhh
Confidence 9998 999998887765 44444566665543
No 96
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=40.82 E-value=12 Score=36.56 Aligned_cols=47 Identities=13% Similarity=0.209 Sum_probs=40.8
Q ss_pred CCCCCCChHhHHHhccCCC-HHHHHHHHHHhHHHHHHhcCCCCccccc
Q 042559 120 FLAWPLPPDLTIKVFSMLD-TQSLCHAAATCSMFNKFAMDPLCYANID 166 (547)
Q Consensus 120 ~~~~~LP~elL~~IFs~L~-~~dl~~~a~VCk~W~~l~~d~~lw~~vd 166 (547)
..+.+||.|++..|+..|+ -+|+..+++|=...+.+..+...|+.+-
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLc 247 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLC 247 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3578999999999999995 7999999999888888888888888764
No 97
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=33.64 E-value=27 Score=38.69 Aligned_cols=20 Identities=50% Similarity=0.777 Sum_probs=9.0
Q ss_pred eccCCcccCCCCCCCccCcc
Q 042559 510 SCSESSYNSDHGSGNEEGQD 529 (547)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~ 529 (547)
+++.++.+|+.+|..||+||
T Consensus 1261 scsssssss~ssss~ed~d~ 1280 (1463)
T PHA03308 1261 SCSSSSSSSDSSSSEEDGDE 1280 (1463)
T ss_pred cccccCCCCCcccccccccc
Confidence 33333444444444455554
No 98
>PF02377 Dishevelled: Dishevelled specific domain; InterPro: IPR003351 Wnt proteins constitute a large family of secreted signalling molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Wg) (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease []. Wnt signal transduction proceeds initially via binding to their cell surface receptors - the so-called frizzled proteins. This activates the signalling functions of B-catenin and regulates the expression of specific genes important in development []. More recently, however, several non-canonical Wnt signalling pathways have been elucidated that act independently of B-catenin. In both cases, the transduction mechanism requires dishevelled protein (Dsh), a cytoplasmic phosphoprotein that acts directly downstream of frizzled []. In addition to its role in Wnt signalling, Dsh is also involved in generating planar polarity in Drosophila and has been implicated in the Notch signal transduction cascade. Three human and mouse homologues of Dsh have been cloned (DVL-1 to 3); it is believed that these proteins, like their Drosophila counterpart, are involved in signal transduction. Human and murine orthologues share more than 95% sequence identity and are each 40-50% identical to Drosophila Dsh. Sequence similarity amongst Dsh proteins is concentrated around three conserved domains: at the N terminus lies a DIX domain (mutations mapping to this region reduce or completely disrupt Wg signalling); a PDZ (or DHR) domain, often found in proteins involved in protein-protein interactions, lies within the central portion of the protein (point mutations within this module have been shown to have little effect on Wg-mediated signal transduction); and a DEP domain is located towards the C terminus and is conserved among a set of proteins that regulate various GTPases (whilst genetic and molecular assays have shown this module to be dispensable for Wg signalling, it is thought to be important in planar polarity signalling in flies []). This domain is specific to the signalling protein dishevelled. In Drosophila melanogaster, the dishevelled segment polarity protein is required to establish coherent arrays of polarized cells and segments in embryos. It plays a role in wingless signalling, possibly through the reception of the wingless signal by target cells and subsequent redistribution of arm protein in response to that signal in embryos.The domain is found adjacent to the PDZ domain (IPR001478 from INTERPRO), often in conjunction with DEP (IPR000591 from INTERPRO) and DIX (IPR001158 from INTERPRO).
Probab=30.51 E-value=26 Score=27.26 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=20.7
Q ss_pred cCCccceeccCCcccCCCCCCCccC
Q 042559 503 SDDSLLMSCSESSYNSDHGSGNEEG 527 (547)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (547)
-+.+.+++||++...|++.+++||.
T Consensus 33 ~~ssss~mSSeLEsTSf~dSedd~~ 57 (73)
T PF02377_consen 33 YESSSSVMSSELESTSFFDSEDDDT 57 (73)
T ss_pred ccchhhhhhhccccccccccccccc
Confidence 3778888999999999999987763
No 99
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=29.11 E-value=2.5e+02 Score=21.00 Aligned_cols=60 Identities=25% Similarity=0.279 Sum_probs=42.2
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEee
Q 042559 364 FRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDI 431 (547)
Q Consensus 364 ~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~L 431 (547)
..+++.|.+.+...+|-.-+..+ + =+.+.+.. ..++..++..++...+.|..++|+.|.+
T Consensus 10 ~~~~~~l~i~~~~~it~~~Ll~~-n------c~~i~l~~-~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 10 PRNLEKLSISSSNWITLDDLLNM-N------CKKIELWN-SKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred hCCCCEEEEccCCcccHHHHHhc-C------CCEEEEEC-CCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 34678888876656765544322 1 34566665 5688899988888888888999998876
No 100
>PHA03100 ankyrin repeat protein; Provisional
Probab=28.61 E-value=97 Score=33.19 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=25.6
Q ss_pred CCCCCCChHhHHHhccCCCHHHHHHHHHHh
Q 042559 120 FLAWPLPPDLTIKVFSMLDTQSLCHAAATC 149 (547)
Q Consensus 120 ~~~~~LP~elL~~IFs~L~~~dl~~~a~VC 149 (547)
..|..||.||..+|++||+..|+......+
T Consensus 446 ~~w~~lP~Eik~~Il~~l~~~dl~~~~~~~ 475 (480)
T PHA03100 446 TYWNILPIEIKYKILEYLSNRDLKSLIENF 475 (480)
T ss_pred CchhhCcHHHHHHHHHhCCHHHHHHHHhhh
Confidence 468899999999999999999997766544
No 101
>PHA02875 ankyrin repeat protein; Provisional
Probab=25.24 E-value=85 Score=32.92 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=23.2
Q ss_pred CCCCCCCChHhHHHhccCCCHHHHHHH
Q 042559 119 NFLAWPLPPDLTIKVFSMLDTQSLCHA 145 (547)
Q Consensus 119 ~~~~~~LP~elL~~IFs~L~~~dl~~~ 145 (547)
...|..||.|+..+|+++|+..|+...
T Consensus 384 ~~~w~~LP~Eik~~Il~~l~~~dL~~~ 410 (413)
T PHA02875 384 ESKWNILPHEIKYLILEKIGNKDIDIA 410 (413)
T ss_pred ccchhcCcHHHHHHHHHHhccchhhhh
Confidence 356899999999999999999988653
No 102
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=25.07 E-value=24 Score=35.69 Aligned_cols=45 Identities=18% Similarity=0.054 Sum_probs=41.4
Q ss_pred CCCCChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCccccc
Q 042559 122 AWPLPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYANID 166 (547)
Q Consensus 122 ~~~LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~~vd 166 (547)
.+.+|..++..|.+++..+++.++|.|.++...+...-.+|.+..
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c 52 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPC 52 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccc
Confidence 578999999999999999999999999999999998888898764
No 103
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=25.06 E-value=57 Score=19.26 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=5.6
Q ss_pred CCCcEEeccCC
Q 042559 365 RKLKYVDFSTS 375 (547)
Q Consensus 365 ~~L~~L~Ls~c 375 (547)
++|++|+|++|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00369 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 34555555554
No 104
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=25.06 E-value=57 Score=19.26 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=5.6
Q ss_pred CCCcEEeccCC
Q 042559 365 RKLKYVDFSTS 375 (547)
Q Consensus 365 ~~L~~L~Ls~c 375 (547)
++|++|+|++|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00370 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 34555555554
No 105
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=23.12 E-value=40 Score=34.33 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=36.8
Q ss_pred CCCCCCChHhHHHhccCCCH--------HHHHHHHHHhHHHHHHhcC----CCCcccccc
Q 042559 120 FLAWPLPPDLTIKVFSMLDT--------QSLCHAAATCSMFNKFAMD----PLCYANIDL 167 (547)
Q Consensus 120 ~~~~~LP~elL~~IFs~L~~--------~dl~~~a~VCk~W~~l~~d----~~lw~~vdL 167 (547)
+.+..||+|+|..|....+- +..+.|+.||+.|+..+.+ |..|..+++
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~ 102 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTF 102 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccch
Confidence 45789999999999988853 3467889999999987653 555666554
No 106
>PHA02989 ankyrin repeat protein; Provisional
Probab=22.78 E-value=1.5e+02 Score=32.08 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=24.9
Q ss_pred CCCCCCCChHhHHHhccCCCHHHHHHHHH
Q 042559 119 NFLAWPLPPDLTIKVFSMLDTQSLCHAAA 147 (547)
Q Consensus 119 ~~~~~~LP~elL~~IFs~L~~~dl~~~a~ 147 (547)
+..|..||.||..+|+++|+..|+.....
T Consensus 456 ~~~w~~LP~Eik~~Il~~L~~~dl~~i~~ 484 (494)
T PHA02989 456 KNYWMYLPIEIQINILEYLTFSDFKTILK 484 (494)
T ss_pred ccHHHhCCHHHHHHHHHcCCHHHHHHHHh
Confidence 35688999999999999999999876554
No 107
>PHA02878 ankyrin repeat protein; Provisional
Probab=20.98 E-value=1.4e+02 Score=32.19 Aligned_cols=27 Identities=30% Similarity=0.601 Sum_probs=23.6
Q ss_pred CCCCCCCChHhHHHhccCCCHHHHHHH
Q 042559 119 NFLAWPLPPDLTIKVFSMLDTQSLCHA 145 (547)
Q Consensus 119 ~~~~~~LP~elL~~IFs~L~~~dl~~~ 145 (547)
+..|..||.||-.+|++||+-.|+...
T Consensus 444 ~~~w~~lP~Eik~~Il~~l~~~dl~~~ 470 (477)
T PHA02878 444 NYMWNRLPLEIKHYIMELLDDASLCNM 470 (477)
T ss_pred cCcHhhCCHHHHHHHHHHcCcHHHHHH
Confidence 356899999999999999999998654
Done!