Query 042559
Match_columns 547
No_of_seqs 551 out of 2807
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 100.0 7.3E-28 2.5E-32 245.8 17.6 273 120-434 7-282 (336)
2 2p1m_B Transport inhibitor res 99.9 3.1E-24 1.1E-28 235.7 20.2 153 120-292 4-165 (594)
3 3ogk_B Coronatine-insensitive 99.9 1.7E-22 5.9E-27 221.8 20.9 267 122-412 13-371 (592)
4 3ogk_B Coronatine-insensitive 99.7 2.1E-15 7.3E-20 165.2 24.9 220 187-439 292-527 (592)
5 2p1m_B Transport inhibitor res 99.7 2.7E-15 9.2E-20 164.4 23.3 142 257-411 289-448 (594)
6 2ast_B S-phase kinase-associat 99.7 3.5E-16 1.2E-20 159.1 12.9 186 256-458 92-282 (336)
7 2ca6_A RAN GTPase-activating p 99.6 3.5E-15 1.2E-19 155.1 17.7 195 258-459 95-314 (386)
8 1z7x_W Ribonuclease inhibitor; 99.6 2E-14 6.9E-19 152.5 16.5 274 162-458 115-408 (461)
9 1z7x_W Ribonuclease inhibitor; 99.6 4.3E-14 1.5E-18 149.9 18.6 272 162-456 58-349 (461)
10 2ca6_A RAN GTPase-activating p 99.5 6.6E-13 2.3E-17 137.8 17.6 256 162-439 34-318 (386)
11 3e4g_A ATP synthase subunit S, 99.4 4.9E-13 1.7E-17 122.3 8.3 91 310-410 62-156 (176)
12 3un9_A NLR family member X1; l 99.4 1.5E-12 5E-17 134.8 12.6 169 258-435 73-250 (372)
13 4fcg_A Uncharacterized protein 99.4 8.3E-14 2.8E-18 141.6 1.4 203 258-487 105-309 (328)
14 3e4g_A ATP synthase subunit S, 99.4 1.3E-12 4.6E-17 119.3 9.0 92 341-439 62-154 (176)
15 3goz_A Leucine-rich repeat-con 99.3 6.6E-12 2.3E-16 129.2 11.9 172 258-437 110-297 (362)
16 4fcg_A Uncharacterized protein 99.3 3.1E-13 1.1E-17 137.4 0.5 210 258-501 82-300 (328)
17 3goz_A Leucine-rich repeat-con 99.3 3.5E-12 1.2E-16 131.3 7.4 169 258-435 81-264 (362)
18 4fmz_A Internalin; leucine ric 99.3 1.6E-11 5.3E-16 125.2 11.1 149 280-459 174-322 (347)
19 3v47_A TOLL-like receptor 5B a 99.2 4.7E-12 1.6E-16 134.0 7.0 216 257-495 103-387 (455)
20 3un9_A NLR family member X1; l 99.2 1.6E-11 5.3E-16 127.0 10.5 170 258-435 102-281 (372)
21 1ogq_A PGIP-2, polygalacturona 99.2 6.9E-13 2.4E-17 133.8 -1.3 248 188-490 50-302 (313)
22 1fs1_A SKP2 F-BOX, cyclin A/CD 99.2 6.6E-12 2.3E-16 91.4 3.1 47 120-166 7-53 (53)
23 3rgz_A Protein brassinosteroid 99.2 3.2E-12 1.1E-16 144.7 1.8 62 422-490 654-715 (768)
24 3v47_A TOLL-like receptor 5B a 99.2 1.1E-11 3.6E-16 131.2 5.5 213 256-490 128-406 (455)
25 2id5_A Lingo-1, leucine rich r 99.2 1.8E-11 6.3E-16 130.4 6.5 136 336-490 172-307 (477)
26 4fmz_A Internalin; leucine ric 99.2 5.7E-11 2E-15 121.0 9.7 190 258-490 133-322 (347)
27 3rgz_A Protein brassinosteroid 99.1 1.2E-12 4.2E-17 148.2 -3.9 147 335-500 413-560 (768)
28 3zyi_A Leucine-rich repeat-con 99.1 8.9E-12 3.1E-16 132.1 2.7 209 256-495 74-282 (452)
29 3zyj_A Leucine-rich repeat-con 99.1 1.4E-11 4.7E-16 130.2 2.7 176 256-458 63-241 (440)
30 1ozn_A Reticulon 4 receptor; N 99.1 3.3E-12 1.1E-16 126.8 -2.1 180 257-458 32-211 (285)
31 4ezg_A Putative uncharacterize 99.1 3.8E-11 1.3E-15 112.4 5.0 148 258-435 45-192 (197)
32 4ezg_A Putative uncharacterize 99.1 5E-11 1.7E-15 111.6 5.5 151 281-459 42-192 (197)
33 3t6q_A CD180 antigen; protein- 99.1 2.5E-12 8.6E-17 141.3 -4.7 106 258-375 302-410 (606)
34 1io0_A Tropomodulin; LRR prote 99.1 2.8E-09 9.6E-14 98.8 15.4 132 273-435 26-162 (185)
35 3t6q_A CD180 antigen; protein- 99.1 6E-12 2.1E-16 138.2 -3.5 234 187-458 277-510 (606)
36 4glp_A Monocyte differentiatio 99.0 1.1E-10 3.7E-15 117.3 5.6 212 258-491 65-284 (310)
37 3rfs_A Internalin B, repeat mo 99.0 5.7E-11 2E-15 117.1 3.4 154 281-457 61-214 (272)
38 2id5_A Lingo-1, leucine rich r 99.0 6.6E-11 2.3E-15 126.1 3.7 103 258-375 33-138 (477)
39 2ra8_A Uncharacterized protein 99.0 4.2E-09 1.4E-13 108.1 16.9 162 257-435 172-341 (362)
40 2z66_A Variable lymphocyte rec 99.0 9.8E-12 3.3E-16 124.6 -3.5 178 258-457 79-257 (306)
41 1o6v_A Internalin A; bacterial 99.0 7.6E-10 2.6E-14 117.7 10.1 102 337-458 262-363 (466)
42 2z80_A TOLL-like receptor 2, v 99.0 8.9E-10 3.1E-14 112.6 10.1 116 337-458 195-311 (353)
43 1o6v_A Internalin A; bacterial 99.0 2.6E-09 8.8E-14 113.6 13.8 167 256-459 220-386 (466)
44 2z80_A TOLL-like receptor 2, v 99.0 1.2E-10 4.2E-15 119.1 3.3 208 257-490 100-312 (353)
45 2z7x_B TOLL-like receptor 1, v 99.0 5.8E-10 2E-14 120.0 8.7 85 363-457 322-408 (520)
46 1wwl_A Monocyte differentiatio 99.0 2.1E-10 7.3E-15 115.3 4.7 201 258-490 96-307 (312)
47 1xku_A Decorin; proteoglycan, 99.0 3.7E-10 1.3E-14 114.3 6.2 140 336-497 141-281 (330)
48 3vq2_A TLR4, TOLL-like recepto 99.0 1.3E-11 4.5E-16 135.5 -5.0 167 306-497 373-539 (606)
49 3o6n_A APL1; leucine-rich repe 99.0 1.2E-10 4.2E-15 120.7 2.5 252 188-495 45-311 (390)
50 1wwl_A Monocyte differentiatio 99.0 5.7E-11 2E-15 119.6 -0.1 192 281-495 93-290 (312)
51 1ogq_A PGIP-2, polygalacturona 99.0 1.6E-11 5.5E-16 123.7 -4.2 201 257-490 76-279 (313)
52 3zyj_A Leucine-rich repeat-con 99.0 1.2E-10 4E-15 123.1 2.1 176 257-458 112-289 (440)
53 3oja_B Anopheles plasmodium-re 99.0 1.8E-10 6.1E-15 126.6 3.6 255 188-497 51-319 (597)
54 2z66_A Variable lymphocyte rec 99.0 2.5E-11 8.5E-16 121.6 -3.0 35 422-456 173-207 (306)
55 2o6q_A Variable lymphocyte rec 99.0 1.7E-10 5.7E-15 113.6 2.6 179 257-458 37-215 (270)
56 2z81_A CD282 antigen, TOLL-lik 99.0 3.3E-09 1.1E-13 114.8 13.0 111 340-459 310-421 (549)
57 1h6u_A Internalin H; cell adhe 98.9 6.5E-10 2.2E-14 111.7 6.8 166 257-459 63-228 (308)
58 1h6u_A Internalin H; cell adhe 98.9 6.9E-10 2.4E-14 111.5 6.9 189 188-436 41-229 (308)
59 4ecn_A Leucine-rich repeat pro 98.9 1.6E-10 5.5E-15 131.6 2.4 150 339-499 672-826 (876)
60 3rfs_A Internalin B, repeat mo 98.9 2.2E-10 7.6E-15 112.8 2.3 178 281-490 39-216 (272)
61 1ziw_A TOLL-like receptor 3; i 98.9 3E-09 1E-13 118.4 10.4 128 258-403 74-205 (680)
62 3o53_A Protein LRIM1, AGAP0063 98.9 2.8E-10 9.4E-15 114.8 1.4 12 187-198 33-44 (317)
63 3zyi_A Leucine-rich repeat-con 98.9 3E-10 1E-14 120.3 1.7 178 257-458 123-300 (452)
64 1ozn_A Reticulon 4 receptor; N 98.9 6.9E-10 2.4E-14 109.9 4.0 186 282-495 31-217 (285)
65 1io0_A Tropomodulin; LRR prote 98.9 1.5E-08 5E-13 93.9 12.4 121 258-409 37-166 (185)
66 3o53_A Protein LRIM1, AGAP0063 98.9 2.8E-10 9.5E-15 114.8 0.6 189 258-490 59-248 (317)
67 4ecn_A Leucine-rich repeat pro 98.8 1.3E-09 4.3E-14 124.2 5.1 107 258-379 516-632 (876)
68 3o6n_A APL1; leucine-rich repe 98.8 4.7E-10 1.6E-14 116.3 1.2 208 258-496 70-289 (390)
69 1xku_A Decorin; proteoglycan, 98.8 1E-09 3.4E-14 111.1 3.5 221 188-459 52-274 (330)
70 2je0_A Acidic leucine-rich nuc 98.8 5E-10 1.7E-14 99.6 1.1 63 336-403 60-123 (149)
71 3vq2_A TLR4, TOLL-like recepto 98.8 1.5E-10 5.1E-15 127.1 -2.9 137 335-491 371-509 (606)
72 1h6t_A Internalin B; cell adhe 98.8 2.7E-09 9.2E-14 106.3 6.5 145 280-457 65-209 (291)
73 4eco_A Uncharacterized protein 98.8 4.3E-10 1.5E-14 124.5 0.6 11 257-267 105-115 (636)
74 4eco_A Uncharacterized protein 98.8 4.6E-10 1.6E-14 124.3 0.8 138 187-353 248-390 (636)
75 2ell_A Acidic leucine-rich nuc 98.8 4.1E-10 1.4E-14 102.3 -0.0 113 306-436 46-159 (168)
76 2z63_A TOLL-like receptor 4, v 98.8 6.3E-11 2.2E-15 128.8 -6.5 35 422-456 468-502 (570)
77 3j0a_A TOLL-like receptor 5; m 98.8 7.2E-10 2.5E-14 126.7 2.0 16 475-490 358-373 (844)
78 3oja_A Leucine-rich immune mol 98.8 3.3E-10 1.1E-14 121.3 -1.0 189 258-490 59-248 (487)
79 3oja_B Anopheles plasmodium-re 98.8 6.1E-10 2.1E-14 122.3 1.0 211 258-497 76-296 (597)
80 3bz5_A Internalin-J, INLJ; leu 98.8 1.6E-09 5.5E-14 115.1 4.1 182 257-491 64-245 (457)
81 3j0a_A TOLL-like receptor 5; m 98.8 7.9E-10 2.7E-14 126.4 1.7 37 256-293 122-158 (844)
82 2xwt_C Thyrotropin receptor; s 98.8 3.2E-10 1.1E-14 109.3 -1.3 179 255-459 29-216 (239)
83 1ziw_A TOLL-like receptor 3; i 98.8 2E-09 6.9E-14 119.8 4.3 60 424-490 222-283 (680)
84 2o6q_A Variable lymphocyte rec 98.8 1.6E-09 5.4E-14 106.5 2.8 197 258-490 17-216 (270)
85 3bz5_A Internalin-J, INLJ; leu 98.8 2.8E-09 9.4E-14 113.2 4.5 95 258-375 107-201 (457)
86 1m9s_A Internalin B; cell inva 98.8 4.4E-09 1.5E-13 115.4 6.1 147 257-438 65-211 (605)
87 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 4.2E-09 1.4E-13 114.6 5.9 59 256-320 120-180 (562)
88 2z62_A TOLL-like receptor 4, v 98.7 5.4E-10 1.9E-14 110.1 -1.8 38 338-375 122-159 (276)
89 2ra8_A Uncharacterized protein 98.7 4.4E-09 1.5E-13 108.0 4.4 166 258-439 140-321 (362)
90 1m9s_A Internalin B; cell inva 98.7 3.5E-09 1.2E-13 116.2 4.0 163 258-457 44-206 (605)
91 1h6t_A Internalin B; cell adhe 98.7 7.6E-09 2.6E-13 103.0 6.0 146 258-438 69-214 (291)
92 2o6s_A Variable lymphocyte rec 98.7 7.5E-10 2.6E-14 104.3 -1.4 43 422-478 146-188 (208)
93 2ft3_A Biglycan; proteoglycan, 98.7 1E-09 3.4E-14 111.2 -0.5 67 422-496 215-281 (332)
94 2ell_A Acidic leucine-rich nuc 98.7 1.7E-09 5.9E-14 98.2 1.0 132 257-404 24-158 (168)
95 2z7x_B TOLL-like receptor 1, v 98.7 3.2E-08 1.1E-12 106.4 11.1 202 256-490 275-479 (520)
96 4glp_A Monocyte differentiatio 98.7 9.9E-09 3.4E-13 102.9 6.5 194 283-498 64-270 (310)
97 2z63_A TOLL-like receptor 4, v 98.7 5E-10 1.7E-14 121.7 -3.4 135 336-490 369-505 (570)
98 3m19_A Variable lymphocyte rec 98.7 2.5E-09 8.6E-14 103.9 1.8 161 256-439 34-194 (251)
99 2je0_A Acidic leucine-rich nuc 98.7 6.9E-09 2.4E-13 92.1 4.2 129 308-455 16-147 (149)
100 2ft3_A Biglycan; proteoglycan, 98.7 2.4E-09 8.2E-14 108.4 1.3 174 257-459 102-275 (332)
101 2z81_A CD282 antigen, TOLL-lik 98.7 3.1E-08 1E-12 107.2 9.9 196 257-490 310-508 (549)
102 3oja_A Leucine-rich immune mol 98.7 2.5E-10 8.4E-15 122.3 -6.7 200 257-498 34-233 (487)
103 2o6s_A Variable lymphocyte rec 98.6 4.4E-09 1.5E-13 98.9 0.9 164 255-448 26-189 (208)
104 2z62_A TOLL-like receptor 4, v 98.6 6.5E-09 2.2E-13 102.3 2.0 203 256-490 27-235 (276)
105 1p9a_G Platelet glycoprotein I 98.6 2.8E-09 9.5E-14 106.1 -1.1 170 257-453 31-200 (290)
106 3m19_A Variable lymphocyte rec 98.6 1.2E-08 4.2E-13 99.0 3.4 173 258-458 15-189 (251)
107 1pgv_A TMD-1, tropomodulin TMD 98.6 5.6E-07 1.9E-11 83.6 14.1 132 272-434 30-167 (197)
108 2xwt_C Thyrotropin receptor; s 98.6 6.5E-09 2.2E-13 100.0 0.8 188 283-496 31-222 (239)
109 1p9a_G Platelet glycoprotein I 98.5 1.2E-08 4E-13 101.6 1.1 196 257-489 10-205 (290)
110 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 2E-07 6.7E-12 101.4 10.4 36 339-375 352-387 (562)
111 1xeu_A Internalin C; cellular 98.5 3.8E-08 1.3E-12 96.4 4.0 146 258-439 42-187 (263)
112 1xeu_A Internalin C; cellular 98.5 4.3E-08 1.5E-12 96.0 2.9 146 280-459 38-183 (263)
113 1a9n_A U2A', U2A'; complex (nu 98.5 2.3E-08 7.8E-13 91.5 0.8 33 258-293 20-52 (176)
114 3l2o_B F-box only protein 4; s 98.4 2.6E-08 8.8E-13 97.0 -0.8 48 121-168 4-51 (312)
115 2xot_A Amphoterin-induced prot 98.4 2.8E-08 9.5E-13 102.0 -1.3 162 255-439 37-204 (361)
116 2v70_A SLIT-2, SLIT homolog 2 98.4 4E-08 1.4E-12 93.5 -0.7 115 306-439 54-168 (220)
117 3e6j_A Variable lymphocyte rec 98.3 1.1E-07 3.8E-12 91.0 2.0 90 337-439 85-174 (229)
118 3g06_A SSPH2 (leucine-rich rep 98.3 1E-07 3.5E-12 104.8 1.4 57 422-490 239-295 (622)
119 3g06_A SSPH2 (leucine-rich rep 98.3 9.9E-08 3.4E-12 104.9 1.2 62 423-499 220-281 (622)
120 2v9t_B SLIT homolog 2 protein 98.3 7.1E-08 2.4E-12 91.7 -0.1 91 337-439 77-167 (220)
121 1a9n_A U2A', U2A'; complex (nu 98.3 1.2E-07 4.3E-12 86.6 1.2 133 281-436 17-152 (176)
122 3e6j_A Variable lymphocyte rec 98.3 2.6E-07 8.9E-12 88.4 2.7 132 255-405 38-171 (229)
123 1pgv_A TMD-1, tropomodulin TMD 98.2 3.1E-06 1.1E-10 78.6 9.4 117 258-403 42-167 (197)
124 4g8a_A TOLL-like receptor 4; l 98.2 9.1E-08 3.1E-12 104.8 -2.0 157 255-436 50-213 (635)
125 1ds9_A Outer arm dynein; leuci 98.2 1.3E-07 4.5E-12 88.2 -0.7 150 258-430 24-180 (198)
126 1jl5_A Outer protein YOPM; leu 98.2 5.1E-07 1.7E-11 95.6 3.2 55 256-320 194-248 (454)
127 2xot_A Amphoterin-induced prot 98.2 1.1E-07 3.7E-12 97.6 -2.2 151 282-449 38-188 (361)
128 2e31_A FBS1, F-box only protei 98.2 2.8E-07 9.6E-12 90.7 0.4 47 120-166 49-96 (297)
129 4g8a_A TOLL-like receptor 4; l 98.2 6.9E-08 2.4E-12 105.7 -4.6 38 422-459 516-553 (635)
130 2v9t_B SLIT homolog 2 protein 98.1 5.9E-07 2E-11 85.3 2.3 131 309-458 32-162 (220)
131 2v70_A SLIT-2, SLIT homolog 2 98.1 8.4E-07 2.9E-11 84.3 2.0 150 286-459 14-164 (220)
132 1ds9_A Outer arm dynein; leuci 98.0 2.1E-07 7.1E-12 86.8 -3.4 125 306-453 45-179 (198)
133 1jl5_A Outer protein YOPM; leu 98.0 3.7E-06 1.3E-10 88.9 5.7 157 257-458 111-267 (454)
134 3cvr_A Invasion plasmid antige 98.0 2.5E-06 8.6E-11 92.7 3.5 32 339-375 139-170 (571)
135 4ay9_X Follicle-stimulating ho 98.0 4.7E-07 1.6E-11 92.3 -2.5 84 257-353 30-117 (350)
136 3sb4_A Hypothetical leucine ri 97.9 5.4E-06 1.9E-10 83.5 5.0 65 379-455 214-281 (329)
137 3v7d_B Cell division control p 97.9 1.4E-06 4.8E-11 91.4 -0.4 48 120-167 13-61 (464)
138 1p22_A F-BOX/WD-repeat protein 97.9 2.2E-06 7.4E-11 89.5 0.6 47 120-166 9-59 (435)
139 4b8c_D Glucose-repressible alc 97.8 9E-07 3.1E-11 99.3 -3.3 115 306-443 221-335 (727)
140 2ovr_B FBW7, F-BOX/WD repeat p 97.8 5.6E-06 1.9E-10 86.4 2.3 47 120-166 17-63 (445)
141 4ay9_X Follicle-stimulating ho 97.8 1.4E-06 4.9E-11 88.7 -2.7 109 283-407 30-142 (350)
142 1w8a_A SLIT protein; signaling 97.8 5E-06 1.7E-10 77.0 0.9 113 309-439 29-141 (192)
143 2o6r_A Variable lymphocyte rec 97.7 7.4E-06 2.5E-10 74.6 1.7 18 422-439 122-139 (177)
144 3cvr_A Invasion plasmid antige 97.7 1.5E-05 5.3E-10 86.5 4.5 175 258-490 60-241 (571)
145 1dce_A Protein (RAB geranylger 97.7 7.5E-06 2.6E-10 89.0 2.0 124 283-431 441-567 (567)
146 2wfh_A SLIT homolog 2 protein 97.7 1.6E-05 5.5E-10 73.7 3.8 88 306-405 51-138 (193)
147 1dce_A Protein (RAB geranylger 97.7 5.8E-06 2E-10 89.9 0.8 150 277-453 403-565 (567)
148 1w8a_A SLIT protein; signaling 97.7 2.1E-06 7.3E-11 79.5 -2.4 88 306-405 51-138 (192)
149 2o6r_A Variable lymphocyte rec 97.7 1.1E-05 3.9E-10 73.3 2.1 90 306-407 49-138 (177)
150 2wfh_A SLIT homolog 2 protein 97.7 8.1E-06 2.8E-10 75.7 1.1 92 335-438 49-140 (193)
151 4b8c_D Glucose-repressible alc 97.3 3.6E-05 1.2E-09 86.2 0.7 110 256-382 223-332 (727)
152 3sb4_A Hypothetical leucine ri 97.0 0.00022 7.6E-09 71.6 2.7 124 284-430 203-327 (329)
153 3rw6_A Nuclear RNA export fact 96.9 0.0012 4E-08 64.3 6.6 41 280-320 167-207 (267)
154 2r9u_A Variable lymphocyte rec 96.8 0.0003 1E-08 63.9 1.6 16 422-437 103-118 (174)
155 3g39_A Variable lymphocyte rec 96.8 0.00031 1E-08 63.5 1.6 88 340-439 30-117 (170)
156 2r9u_A Variable lymphocyte rec 96.8 0.00073 2.5E-08 61.2 3.6 9 395-403 107-115 (174)
157 3g39_A Variable lymphocyte rec 96.7 0.00083 2.8E-08 60.5 3.6 12 364-375 77-88 (170)
158 3rw6_A Nuclear RNA export fact 96.5 0.0038 1.3E-07 60.7 6.9 15 306-320 167-181 (267)
159 2ifg_A High affinity nerve gro 95.5 0.0027 9.3E-08 63.8 0.5 84 279-375 27-113 (347)
160 2ifg_A High affinity nerve gro 95.5 0.0018 6.3E-08 65.1 -0.9 89 306-406 28-116 (347)
161 4fdw_A Leucine rich hypothetic 95.3 0.0022 7.5E-08 66.4 -1.2 11 364-374 270-280 (401)
162 4fdw_A Leucine rich hypothetic 95.0 0.0052 1.8E-07 63.5 0.7 13 306-318 177-189 (401)
163 4fs7_A Uncharacterized protein 89.3 0.04 1.4E-06 56.4 -1.9 11 422-432 341-351 (394)
164 4fs7_A Uncharacterized protein 85.0 0.2 6.8E-06 51.1 0.4 140 280-452 250-392 (394)
165 4gt6_A Cell surface protein; l 84.1 0.13 4.6E-06 52.4 -1.3 121 306-455 262-385 (394)
166 4h09_A Hypothetical leucine ri 83.8 0.31 1E-05 49.2 1.2 32 422-455 308-340 (379)
167 4gt6_A Cell surface protein; l 82.1 1.6 5.6E-05 44.1 5.9 123 280-433 262-387 (394)
168 4h09_A Hypothetical leucine ri 71.2 0.66 2.3E-05 46.7 -0.8 140 280-450 214-358 (379)
169 3rfe_A Platelet glycoprotein I 34.1 9.5 0.00033 31.9 0.3 12 341-352 32-43 (130)
170 3rfe_A Platelet glycoprotein I 33.9 37 0.0013 28.2 4.1 34 310-350 32-65 (130)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.95 E-value=7.3e-28 Score=245.82 Aligned_cols=273 Identities=16% Similarity=0.219 Sum_probs=183.9
Q ss_pred CCCCCCChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCccccccccccccchHHHHHHHHHHhcCCccEEEecccC
Q 042559 120 FLAWPLPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYANIDLRTVVPKVNNAVVSTMIHRAGKSLQSLKLGIVP 199 (547)
Q Consensus 120 ~~~~~LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~~vdL~~~~~~~~~~~l~~l~~r~~~~L~~L~L~~~~ 199 (547)
..|..||+|++.+||+||+.+|++++++|||+|+.++.++..|+++++... .+.+..+..+ ....++.|++++..
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~--~~~~~~~~~~---~~~~l~~L~l~~n~ 81 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK--NLHPDVTGRL---LSQGVIAFRCPRSF 81 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC--BCCHHHHHHH---HHTTCSEEECTTCE
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccc--cCCHHHHHhh---hhccceEEEcCCcc
Confidence 458999999999999999999999999999999999999999999998764 3334444333 23578899887432
Q ss_pred CCCCCCccchhHHHHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeCCCCCCHHHHHHHH
Q 042559 200 GPTASPWSCQSLVYTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYNIERMDNASLSMAL 279 (547)
Q Consensus 200 ~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c~~lt~~~L~~l~ 279 (547)
-....+. +..+.+++.|.+.+.. ..+.........|+ +|++|+|++| .+++.....+
T Consensus 82 l~~~~~~--------~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~------------~L~~L~L~~~-~l~~~~~~~l- 138 (336)
T 2ast_B 82 MDQPLAE--------HFSPFRVQHMDLSNSV-IEVSTLHGILSQCS------------KLQNLSLEGL-RLSDPIVNTL- 138 (336)
T ss_dssp ECSCCCS--------CCCCBCCCEEECTTCE-ECHHHHHHHHTTBC------------CCSEEECTTC-BCCHHHHHHH-
T ss_pred ccccchh--------hccCCCCCEEEccCCC-cCHHHHHHHHhhCC------------CCCEEeCcCc-ccCHHHHHHH-
Confidence 1111100 2235666666665432 11111122334444 6777887777 4565544444
Q ss_pred hcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCC-CcceEEeecc--CCCHHH
Q 042559 280 SACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCP-NLTSMALRGF--KLPDYK 356 (547)
Q Consensus 280 ~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~-~L~~L~L~~~--~ltd~~ 356 (547)
..+++|++|+|++|..+++.++..+..++++|++|++++|..+++..+. ..+..++ +|++|++++| .+++..
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-----~~~~~l~~~L~~L~l~~~~~~~~~~~ 213 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ-----VAVAHVSETITQLNLSGYRKNLQKSD 213 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH-----HHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH-----HHHHhcccCCCEEEeCCCcccCCHHH
Confidence 4477788888877767777777776677777888887777445443322 4566677 7888888777 677777
Q ss_pred HHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCC
Q 042559 357 IRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNR 434 (547)
Q Consensus 357 l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c 434 (547)
+..+...+++|++|+|++|..+++..+..++.+++ |++|+|++|..+++.++.. .+.+++|++|+|++|
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~---L~~L~l~~~~~~~~~~~~~------l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY---LQHLSLSRCYDIIPETLLE------LGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT---CCEEECTTCTTCCGGGGGG------GGGCTTCCEEECTTS
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC---CCEeeCCCCCCCCHHHHHH------HhcCCCCCEEeccCc
Confidence 76666667778888887774477776666666654 7778887777666665411 124777788887777
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.1e-24 Score=235.72 Aligned_cols=153 Identities=14% Similarity=0.202 Sum_probs=81.1
Q ss_pred CCCCCCChHhHHHhccCCC-HHHHHHHHHHhHHHHHHhcCCCCccccccccccccchHHHHHHHHHHhcCCccEEEeccc
Q 042559 120 FLAWPLPPDLTIKVFSMLD-TQSLCHAAATCSMFNKFAMDPLCYANIDLRTVVPKVNNAVVSTMIHRAGKSLQSLKLGIV 198 (547)
Q Consensus 120 ~~~~~LP~elL~~IFs~L~-~~dl~~~a~VCk~W~~l~~d~~lw~~vdL~~~~~~~~~~~l~~l~~r~~~~L~~L~L~~~ 198 (547)
..|+.||+|++.+||+||+ .+++.+++.|||+|+.+ +...|.++++..+....... +..+ .+.|++|+++++
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~--~~~~~~~l~~~~~~~~~~~~----~~~~-~~~L~~L~L~~~ 76 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI--ERWCRRKVFIGNCYAVSPAT----VIRR-FPKVRSVELKGK 76 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH--HHHHCCEEEESSTTSSCHHH----HHHH-CTTCCEEEEECS
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh--hhhhceEEeeccccccCHHH----HHhh-CCCceEEeccCC
Confidence 4588999999999999999 99999999999999998 34557777765443222221 2222 355777777765
Q ss_pred CCCCCCC-----c---cchhHHHHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeCCCCC
Q 042559 199 PGPTASP-----W---SCQSLVYTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYNIERM 270 (547)
Q Consensus 199 ~~~~~~~-----~---~c~~l~~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c~~l 270 (547)
+...+.. + ....+......+++++.|.+.+.. ..+.....+...|+ +|++|+|.+|..+
T Consensus 77 ~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~------------~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 77 PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFK------------NFKVLVLSSCEGF 143 (594)
T ss_dssp CGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCT------------TCCEEEEESCEEE
T ss_pred CchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCC------------CCcEEeCCCcCCC
Confidence 4332111 0 001122233455556555554321 11111222333344 4555555555555
Q ss_pred CHHHHHHHHhcCCCccEEEEec
Q 042559 271 DNASLSMALSACPSLLDLEIVG 292 (547)
Q Consensus 271 t~~~L~~l~~~~~~L~~L~Ls~ 292 (547)
++.++..++..|++|++|+|++
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~ 165 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRE 165 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTT
T ss_pred CHHHHHHHHHhCCCCCEEeCcC
Confidence 5555555554455555555443
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=1.7e-22 Score=221.79 Aligned_cols=267 Identities=13% Similarity=0.081 Sum_probs=153.7
Q ss_pred CCCCChHhHHHhccCC-CHHHHHHHHHHhHHHHHHhcCCCCccccccccccccchHHHHHHHHHHhcCCccEEEecccCC
Q 042559 122 AWPLPPDLTIKVFSML-DTQSLCHAAATCSMFNKFAMDPLCYANIDLRTVVPKVNNAVVSTMIHRAGKSLQSLKLGIVPG 200 (547)
Q Consensus 122 ~~~LP~elL~~IFs~L-~~~dl~~~a~VCk~W~~l~~d~~lw~~vdL~~~~~~~~~~~l~~l~~r~~~~L~~L~L~~~~~ 200 (547)
...||+|++.+||+|| +.+++.+++.|||+|+.+.. ..|..+.+....... ...+..++ +.|++|+|++|+.
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~--~~~~~l~~~~~~~~~----~~~~~~~~-~~L~~L~L~~~~~ 85 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS--ETREHVTMALCYTAT----PDRLSRRF-PNLRSLKLKGKPR 85 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH--HHCCEEEESCGGGSC----HHHHHHHC-TTCSEEEEECSCG
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh--ccccEEEEeeccccC----hHHHHHhC-CCCeEEEecCCcc
Confidence 4579999999999999 89999999999999999842 223333332221111 22333444 4599999987654
Q ss_pred CCCC---C----c-cchhHHHHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeCCCCCCH
Q 042559 201 PTAS---P----W-SCQSLVYTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYNIERMDN 272 (547)
Q Consensus 201 ~~~~---~----~-~c~~l~~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c~~lt~ 272 (547)
..+. + . ....+......|++++.|.+.+.. ..+.....+...|+. +|++|+|++|..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~-----------~L~~L~L~~~~~~~~ 153 (592)
T 3ogk_B 86 AAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARAD-----------DLETLKLDKCSGFTT 153 (592)
T ss_dssp GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGG-----------GCCEEEEESCEEEEH
T ss_pred hhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccc-----------cCcEEECcCCCCcCH
Confidence 3211 0 0 111233344577777777665431 222222234443431 266666666655555
Q ss_pred HHHHHHHhcCCCccEEEEecCC------------------------------CCCHHHHHHHHhcCCCccEEEecCCCC-
Q 042559 273 ASLSMALSACPSLLDLEIVGLH------------------------------VELRQTLMSVSMSCPLLERLFFESSKT- 321 (547)
Q Consensus 273 ~~L~~l~~~~~~L~~L~Ls~c~------------------------------~i~~~~l~~l~~~~~~L~~L~L~~c~~- 321 (547)
.++..++..|++|++|+|++|. .+...++..+..+|++|++|++++|..
T Consensus 154 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 154 DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 5555555555566655555542 123566777777888888888877631
Q ss_pred -----------CCCCc------------------------------CCCcchHHHhcCCCCcceEEeeccCCCHHHHHHH
Q 042559 322 -----------GRDDS------------------------------LKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRIL 360 (547)
Q Consensus 322 -----------l~~~~------------------------------l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l 360 (547)
++... .....+..+...+++|++|++++|.+++.++..+
T Consensus 234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~ 313 (592)
T 3ogk_B 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313 (592)
T ss_dssp GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH
T ss_pred HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH
Confidence 00000 0011223455567777788877777777766665
Q ss_pred HhcCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEEeeeC----------CCCCCHHHHH
Q 042559 361 LKGFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVLILRD----------CMHLKEVEVA 412 (547)
Q Consensus 361 ~~~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls~----------C~~L~~~~l~ 412 (547)
...|++|++|+|++ .+++.++..++. +++ |++|+|++ |..+++.++.
T Consensus 314 ~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~---L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 314 IQKCPNLEVLETRN--VIGDRGLEVLAQYCKQ---LKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp HTTCTTCCEEEEEG--GGHHHHHHHHHHHCTT---CCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred HHhCcCCCEEeccC--ccCHHHHHHHHHhCCC---CCEEEeecCccccccccccCccCHHHHH
Confidence 55666666666662 455555555543 443 66666663 5566655553
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=2.1e-15 Score=165.22 Aligned_cols=220 Identities=15% Similarity=0.151 Sum_probs=170.3
Q ss_pred cCCccEEEecccCCCCCCCccchhHHHHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeC
Q 042559 187 GKSLQSLKLGIVPGPTASPWSCQSLVYTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYN 266 (547)
Q Consensus 187 ~~~L~~L~L~~~~~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~ 266 (547)
.+.|++|+|+.+. .+ -..+...+..|++++.|.+.....+.+ ...+...|+ +|++|+|++
T Consensus 292 ~~~L~~L~Ls~~~-l~-----~~~~~~~~~~~~~L~~L~L~~~~~~~~--l~~~~~~~~------------~L~~L~L~~ 351 (592)
T 3ogk_B 292 AAQIRKLDLLYAL-LE-----TEDHCTLIQKCPNLEVLETRNVIGDRG--LEVLAQYCK------------QLKRLRIER 351 (592)
T ss_dssp GGGCCEEEETTCC-CC-----HHHHHHHHTTCTTCCEEEEEGGGHHHH--HHHHHHHCT------------TCCEEEEEC
T ss_pred cCCCcEEecCCCc-CC-----HHHHHHHHHhCcCCCEEeccCccCHHH--HHHHHHhCC------------CCCEEEeec
Confidence 4568888887553 11 112334467888888887764443333 234556676 699999995
Q ss_pred ----------CCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecC---CCCCCCCcCCCcchH
Q 042559 267 ----------IERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFES---SKTGRDDSLKSPTCV 333 (547)
Q Consensus 267 ----------c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~---c~~l~~~~l~~~~l~ 333 (547)
|..+++.++..++..|++|++|++ +|..+++.++..++..|++|++|++++ |..+++.... ..+.
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-~~~~ 429 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD-NGVR 429 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH-HHHH
T ss_pred CccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH-HHHH
Confidence 889999999999999999999999 566899999999999999999999984 4455543211 1234
Q ss_pred HHhcCCCCcceEEeecc--CCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEEeeeCCCCCCHHH
Q 042559 334 DFVNNCPNLTSMALRGF--KLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVLILRDCMHLKEVE 410 (547)
Q Consensus 334 ~~~~~~~~L~~L~L~~~--~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls~C~~L~~~~ 410 (547)
.+...|++|++|+++.| .+++.++..++..+++|++|+|++| .+++.++..+.. +++ |++|+|++|. +++.+
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~---L~~L~l~~n~-l~~~~ 504 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPN---LQKLEMRGCC-FSERA 504 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTT---CCEEEEESCC-CBHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcc---cCeeeccCCC-CcHHH
Confidence 56778999999999876 4999999999999999999999998 899988887755 654 9999999998 88887
Q ss_pred HHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 411 VARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 411 l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
+..+.. .+++|++|+|++|. +++
T Consensus 505 ~~~~~~-----~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 505 IAAAVT-----KLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHHHHH-----HCSSCCEEEEESCB-CCT
T ss_pred HHHHHH-----hcCccCeeECcCCc-CCH
Confidence 755543 48999999999998 554
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=2.7e-15 Score=164.39 Aligned_cols=142 Identities=18% Similarity=0.196 Sum_probs=86.0
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCC--------CCCCCCcCC
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESS--------KTGRDDSLK 328 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c--------~~l~~~~l~ 328 (547)
++|++|+|++|. +++..+..++..|++|++|++.+| +++.++..++..|++|++|++.+| ..+++..+
T Consensus 289 ~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l- 364 (594)
T 2p1m_B 289 SRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL- 364 (594)
T ss_dssp TTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH-
T ss_pred CCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH-
Confidence 368888888886 777777777777888888888877 566777777777888888877432 33332222
Q ss_pred CcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEecc-----CCCCCC----HHHHHHHHc-CCCCCCccEE
Q 042559 329 SPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFS-----TSYSIT----GAFLRNLGS-GTGGNLLEVL 398 (547)
Q Consensus 329 ~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls-----~c~~lt----~~~l~~L~~-~~~l~~L~~L 398 (547)
..+...|++|++|.+..+.+++.++..++..+++|++|+++ +|..++ +.++..+.. +++ |++|
T Consensus 365 ----~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~---L~~L 437 (594)
T 2p1m_B 365 ----VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD---LRRL 437 (594)
T ss_dssp ----HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT---CCEE
T ss_pred ----HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC---ccEE
Confidence 23444566666665555566666665555556666666665 444555 444444332 333 5555
Q ss_pred eeeCCCCCCHHHH
Q 042559 399 ILRDCMHLKEVEV 411 (547)
Q Consensus 399 ~Ls~C~~L~~~~l 411 (547)
+|++ ++++.++
T Consensus 438 ~L~~--~l~~~~~ 448 (594)
T 2p1m_B 438 SLSG--LLTDKVF 448 (594)
T ss_dssp ECCS--SCCHHHH
T ss_pred eecC--cccHHHH
Confidence 5533 4444444
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=3.5e-16 Score=159.11 Aligned_cols=186 Identities=17% Similarity=0.213 Sum_probs=152.3
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
.++|++|+|++|. +++..+..++..|++|++|++++| .+++.....+. .+++|++|++++|..+++..+. ..
T Consensus 92 ~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~-----~~ 163 (336)
T 2ast_B 92 PFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQ-----TL 163 (336)
T ss_dssp CBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHH-----HH
T ss_pred CCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHH-----HH
Confidence 4589999999994 788778888999999999999999 68877776665 4999999999999656554333 57
Q ss_pred hcCCCCcceEEeecc-CCCHHHHHHHHhcCC-CCcEEeccCCC-CCCHHHHHHH-HcCCCCCCccEEeeeCCCCCCHHHH
Q 042559 336 VNNCPNLTSMALRGF-KLPDYKIRILLKGFR-KLKYVDFSTSY-SITGAFLRNL-GSGTGGNLLEVLILRDCMHLKEVEV 411 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~-~ltd~~l~~l~~~~~-~L~~L~Ls~c~-~lt~~~l~~L-~~~~~l~~L~~L~Ls~C~~L~~~~l 411 (547)
+..+++|++|++++| .+++.++..+...++ +|++|+|++|. .+++..+..+ ..+++ |++|+|++|..+++..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~---L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN---LVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT---CSEEECTTCTTCCGGGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC---CCEEeCCCCCcCCHHHH
Confidence 888999999999999 999998888888899 99999999997 6887666554 44766 99999999987887665
Q ss_pred HHHHHHhhcCCCCCccEEeeeCCCCCcc-chhhhccCCCCCccchhhh
Q 042559 412 ARFLTAVLTGDFKFLRHLDISNREGLAS-EGDWYDRCFNSRIIPLKEV 458 (547)
Q Consensus 412 ~~~l~~~l~~~~~~L~~L~Ls~c~~l~~-~~~~l~~c~~L~~l~l~~l 458 (547)
..+ +.+++|++|+|++|..+++ ....+..+++|+.+.+...
T Consensus 241 ~~l------~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 241 QEF------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGG------GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHH------hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 221 3679999999999987766 4456788999998876543
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=3.5e-15 Score=155.08 Aligned_cols=195 Identities=17% Similarity=0.076 Sum_probs=131.2
Q ss_pred CccEEEEeCCCCCCHH---HHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhc---C---------CCccEEEecCCCCC
Q 042559 258 LLRRLHLYNIERMDNA---SLSMALSACPSLLDLEIVGLHVELRQTLMSVSMS---C---------PLLERLFFESSKTG 322 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~---~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~---~---------~~L~~L~L~~c~~l 322 (547)
+|++|+|++| .+++. .+...+..+++|++|+|++| .++..+...+... + ++|++|++++|. +
T Consensus 95 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l 171 (386)
T 2ca6_A 95 KLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-L 171 (386)
T ss_dssp TCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-C
T ss_pred cccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-C
Confidence 7899999888 44543 34445567888999999888 5665554444332 3 889999998876 3
Q ss_pred CCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHh----cCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccE
Q 042559 323 RDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLK----GFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEV 397 (547)
Q Consensus 323 ~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~----~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~ 397 (547)
++..+. .+...+..+++|++|++++|.+++.++..++. .+++|++|+|++| .+++.+...++. ...+++|++
T Consensus 172 ~~~~~~--~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 172 ENGSMK--EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp TGGGHH--HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCE
T ss_pred CcHHHH--HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCE
Confidence 333222 12234557888999999999888887666544 6788999999988 788766665543 333445999
Q ss_pred EeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc----chhhh-ccCCCCCccchhhhh
Q 042559 398 LILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS----EGDWY-DRCFNSRIIPLKEVS 459 (547)
Q Consensus 398 L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~----~~~~l-~~c~~L~~l~l~~l~ 459 (547)
|+|++|. +++.+...+...+..+.+++|++|+|++|..... .+..+ .++++|+.+.+..+.
T Consensus 249 L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 249 LGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp EECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred EECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 9998864 7777664444332224578899999988875552 44444 557788777665443
No 8
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=2e-14 Score=152.47 Aligned_cols=274 Identities=16% Similarity=0.133 Sum_probs=175.1
Q ss_pred ccccccccccccchHHHHHHHHHH---hcCCccEEEecccCCCCCCCccchhHHHHHhcCcccceeecCCCc-ccCCchh
Q 042559 162 YANIDLRTVVPKVNNAVVSTMIHR---AGKSLQSLKLGIVPGPTASPWSCQSLVYTIRNSVDVSSFSWNDKK-TRQGKES 237 (547)
Q Consensus 162 w~~vdL~~~~~~~~~~~l~~l~~r---~~~~L~~L~L~~~~~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~~~-~~~~~~~ 237 (547)
.+.+++... .+.+..+..+... ....|++|+++.+.-. ...+..+...+..+++++.|.+.+.. .+.+.
T Consensus 115 L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~---~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-- 187 (461)
T 1z7x_W 115 LQELHLSDN--LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---AASCEPLASVLRAKPDFKELTVSNNDINEAGV-- 187 (461)
T ss_dssp CCEEECCSS--BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB---GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH--
T ss_pred eeEEECCCC--cCchHHHHHHHHHHhcCCCcceEEECCCCCCC---HHHHHHHHHHHhhCCCCCEEECcCCCcchHHH--
Confidence 445555432 3444444444332 2346899998765211 12344556667778888888876532 22221
Q ss_pred HHHHhhCCCCCccCcCcCCCCccEEEEeCCCCCCHHH---HHHHHhcCCCccEEEEecCCCCCHHHHHHHHh----cCCC
Q 042559 238 FILTRSCLNPLSGESGAAGSLLRRLHLYNIERMDNAS---LSMALSACPSLLDLEIVGLHVELRQTLMSVSM----SCPL 310 (547)
Q Consensus 238 ~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c~~lt~~~---L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~----~~~~ 310 (547)
..+...+. ...++|++|+|++| .+++.+ +......+++|++|++++| .+++.++..++. .+++
T Consensus 188 ~~l~~~l~--------~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 188 RVLCQGLK--------DSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp HHHHHHHH--------HSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHh--------cCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCC
Confidence 12222111 01126999999998 555544 4445567899999999998 677777766554 5788
Q ss_pred ccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhc----CCCCcEEeccCCCCCCHHHHHHH
Q 042559 311 LERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKG----FRKLKYVDFSTSYSITGAFLRNL 386 (547)
Q Consensus 311 L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~----~~~L~~L~Ls~c~~lt~~~l~~L 386 (547)
|++|++++|. +++.++. .+...+..+++|++|++++|.+++.++..++.. .++|++|++++| .+++.+...+
T Consensus 258 L~~L~L~~n~-l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l 333 (461)
T 1z7x_W 258 LRTLWIWECG-ITAKGCG--DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHF 333 (461)
T ss_dssp CCEEECTTSC-CCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHH
T ss_pred ceEEECcCCC-CCHHHHH--HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHH
Confidence 9999999884 4443221 123455678999999999999988887776653 368999999998 7887755444
Q ss_pred Hc-CCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCc----cchhhhccCCCCCccchhhh
Q 042559 387 GS-GTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLA----SEGDWYDRCFNSRIIPLKEV 458 (547)
Q Consensus 387 ~~-~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~----~~~~~l~~c~~L~~l~l~~l 458 (547)
+. ...+++|++|+|++| .+++.++..+... +...+++|++|+|++|.... ..+..+..+++|+.+.+..+
T Consensus 334 ~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~-l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNN-RLEDAGVRELCQG-LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHCSSCCEEECCSS-BCHHHHHHHHHHH-HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHhhCCCccEEEccCC-ccccccHHHHHHH-HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 33 112234999999987 6887776444332 32346789999999996543 34456678888888866543
No 9
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=4.3e-14 Score=149.91 Aligned_cols=272 Identities=19% Similarity=0.126 Sum_probs=176.6
Q ss_pred ccccccccccccchHHHHHHHHHHhc---CCccEEEecccCCCCCCCccchhHHHHHhcCcccceeecCCCc-ccCCchh
Q 042559 162 YANIDLRTVVPKVNNAVVSTMIHRAG---KSLQSLKLGIVPGPTASPWSCQSLVYTIRNSVDVSSFSWNDKK-TRQGKES 237 (547)
Q Consensus 162 w~~vdL~~~~~~~~~~~l~~l~~r~~---~~L~~L~L~~~~~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~~~-~~~~~~~ 237 (547)
.+.+++.. ..+.+..+..+..... ..|++|+|+++.- ...++..+...+..+++++.|.+.+.. ...+ .
T Consensus 58 L~~L~Ls~--n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i---~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--~ 130 (461)
T 1z7x_W 58 LAELNLRS--NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL---TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG--L 130 (461)
T ss_dssp CCEEECTT--CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC---BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH--H
T ss_pred cCEEeCCC--CcCChHHHHHHHHHHhhCCCceeEEEccCCCC---CHHHHHHHHHHHccCCceeEEECCCCcCchHH--H
Confidence 45666654 2455555555444332 2699999986531 113445667778889999998876532 2222 2
Q ss_pred HHHHhhCCCCCccCcCcCCCCccEEEEeCCCCCCHHH---HHHHHhcCCCccEEEEecCCCCCHHHHHHHHh----cCCC
Q 042559 238 FILTRSCLNPLSGESGAAGSLLRRLHLYNIERMDNAS---LSMALSACPSLLDLEIVGLHVELRQTLMSVSM----SCPL 310 (547)
Q Consensus 238 ~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c~~lt~~~---L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~----~~~~ 310 (547)
..+...+.. ..++|++|+|++| .+++.. +......+++|++|++++| .+++.++..+.. ..++
T Consensus 131 ~~l~~~l~~--------~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~ 200 (461)
T 1z7x_W 131 QLLCEGLLD--------PQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQ 200 (461)
T ss_dssp HHHHHHHTS--------TTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhc--------CCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCC
Confidence 223332210 1226999999998 566543 4445567899999999998 477777766655 3458
Q ss_pred ccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHh----cCCCCcEEeccCCCCCCHHHHHHH
Q 042559 311 LERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLK----GFRKLKYVDFSTSYSITGAFLRNL 386 (547)
Q Consensus 311 L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~----~~~~L~~L~Ls~c~~lt~~~l~~L 386 (547)
|++|++++|. +++.+.. .+...+..+++|++|++++|.+++.++..++. .+++|++|++++| .+++.++..+
T Consensus 201 L~~L~L~~n~-l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l 276 (461)
T 1z7x_W 201 LEALKLESCG-VTSDNCR--DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDL 276 (461)
T ss_dssp CCEEECTTSC-CBTTHHH--HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH
T ss_pred ceEEEccCCC-CcHHHHH--HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHH
Confidence 9999999885 4333211 12345667899999999999998888766654 4789999999998 8998876555
Q ss_pred Hc-CCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccc----hhhhccCCCCCccchh
Q 042559 387 GS-GTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASE----GDWYDRCFNSRIIPLK 456 (547)
Q Consensus 387 ~~-~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~----~~~l~~c~~L~~l~l~ 456 (547)
+. ..++++|++|+|++| .+++.+...+.. .+....++|++|++++|...... +..+..+++|+.+.+.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGN-ELGDEGARLLCE-TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHCTTCCEEECTTC-CCHHHHHHHHHH-HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHhhCCCcceEECCCC-CCchHHHHHHHH-HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence 44 122234999999986 577776643333 23334568888888888744332 3445677888777554
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=6.6e-13 Score=137.82 Aligned_cols=256 Identities=12% Similarity=0.061 Sum_probs=168.9
Q ss_pred ccccccccccccchHHHHHHHHH--HhcCCccEEEecccCCCC---CCCccchhHHHHHhcCcccceeecCCC-cccCCc
Q 042559 162 YANIDLRTVVPKVNNAVVSTMIH--RAGKSLQSLKLGIVPGPT---ASPWSCQSLVYTIRNSVDVSSFSWNDK-KTRQGK 235 (547)
Q Consensus 162 w~~vdL~~~~~~~~~~~l~~l~~--r~~~~L~~L~L~~~~~~~---~~~~~c~~l~~~~~~c~~l~~Lsl~~~-~~~~~~ 235 (547)
.+.+++... .+.......+.. ...+.|++|+|+.+.... ..+.+...+...+..+.+++.|.+.+. +...+.
T Consensus 34 L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 34 VKEIVLSGN--TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp CCEEECTTS--EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred ccEEECCCC--CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 456666543 344444433332 235789999998653211 112233344455678899999888653 333332
Q ss_pred h-hHHHHhhCCCCCccCcCcCCCCccEEEEeCCCCCCHHHHHHHH---hcC---------CCccEEEEecCCCCCHHHHH
Q 042559 236 E-SFILTRSCLNPLSGESGAAGSLLRRLHLYNIERMDNASLSMAL---SAC---------PSLLDLEIVGLHVELRQTLM 302 (547)
Q Consensus 236 ~-~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c~~lt~~~L~~l~---~~~---------~~L~~L~Ls~c~~i~~~~l~ 302 (547)
. .......|+ +|++|+|++| .+++.....+. ..+ ++|++|++++| .+++.++.
T Consensus 112 ~~l~~~l~~~~------------~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~ 177 (386)
T 2ca6_A 112 EPLIDFLSKHT------------PLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMK 177 (386)
T ss_dssp HHHHHHHHHCT------------TCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHH
T ss_pred HHHHHHHHhCC------------CCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHH
Confidence 2 111224455 6999999999 55655444433 334 89999999998 56655555
Q ss_pred H---HHhcCCCccEEEecCCCCCCCCcCCCcchHH-HhcCCCCcceEEeeccCCCHHHHHHHH---hcCCCCcEEeccCC
Q 042559 303 S---VSMSCPLLERLFFESSKTGRDDSLKSPTCVD-FVNNCPNLTSMALRGFKLPDYKIRILL---KGFRKLKYVDFSTS 375 (547)
Q Consensus 303 ~---l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~-~~~~~~~L~~L~L~~~~ltd~~l~~l~---~~~~~L~~L~Ls~c 375 (547)
. ....+++|++|++++|. +++.++.. +.. .+..+++|++|+|++|.+++.+...+. ..+++|++|+|++|
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~--l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNG-IRPEGIEH--LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSC-CCHHHHHH--HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHhCCCcCEEECcCCC-CCHhHHHH--HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 3 34578999999999985 44332210 112 456899999999999999987665543 56899999999999
Q ss_pred CCCCHHHHHHHHc-C--CCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 376 YSITGAFLRNLGS-G--TGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 376 ~~lt~~~l~~L~~-~--~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
.+++.+...++. + .++++|++|+|++| .+++.++..+... +.+++++|++|++++|.....
T Consensus 255 -~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~-l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 255 -LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTV-IDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp -CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHH-HHHHCTTCCEEECTTSBSCTT
T ss_pred -CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHH-HHhcCCCceEEEccCCcCCcc
Confidence 899987776655 2 22456999999996 5788766444332 223689999999999976544
No 11
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.39 E-value=4.9e-13 Score=122.26 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=43.5
Q ss_pred CccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeecc-CCCHHHHHHHHhc---CCCCcEEeccCCCCCCHHHHHH
Q 042559 310 LLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGF-KLPDYKIRILLKG---FRKLKYVDFSTSYSITGAFLRN 385 (547)
Q Consensus 310 ~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~-~ltd~~l~~l~~~---~~~L~~L~Ls~c~~lt~~~l~~ 385 (547)
+|+.|++++|. +++.++. .+..|++|++|+|++| .++|.++..++.. +++|++|+|++|.+|||.++..
T Consensus 62 ~L~~LDLs~~~-Itd~GL~------~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFD------HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGGG------GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHH------HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 35555555554 4444443 2234555555555554 3555555554431 3345555555554455555554
Q ss_pred HHcCCCCCCccEEeeeCCCCCCHHH
Q 042559 386 LGSGTGGNLLEVLILRDCMHLKEVE 410 (547)
Q Consensus 386 L~~~~~l~~L~~L~Ls~C~~L~~~~ 410 (547)
|+.+++ |++|+|++|+.+++.+
T Consensus 135 L~~~~~---L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 135 LHHFRN---LKYLFLSDLPGVKEKE 156 (176)
T ss_dssp GGGCTT---CCEEEEESCTTCCCHH
T ss_pred HhcCCC---CCEEECCCCCCCCchH
Confidence 444433 5555555555554443
No 12
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=1.5e-12 Score=134.75 Aligned_cols=169 Identities=14% Similarity=0.118 Sum_probs=89.9
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhc----CCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchH
Q 042559 258 LLRRLHLYNIERMDNASLSMALSA----CPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCV 333 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~----~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~ 333 (547)
.|+.|+|++| .+++.....++.. +++|++|+|++| .+++.++..++..+++|++|+|++|. +++.+.. .+.
T Consensus 73 ~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~--~L~ 147 (372)
T 3un9_A 73 SLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACK--DLR 147 (372)
T ss_dssp TCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHH--HHH
T ss_pred hCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHH--HHH
Confidence 4666666666 3555444443332 246666666666 46666666666556666666666663 3332221 011
Q ss_pred HHh-cCCCCcceEEeeccCCCHHHHHHHH---hcCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEEeeeCCCCCCH
Q 042559 334 DFV-NNCPNLTSMALRGFKLPDYKIRILL---KGFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVLILRDCMHLKE 408 (547)
Q Consensus 334 ~~~-~~~~~L~~L~L~~~~ltd~~l~~l~---~~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls~C~~L~~ 408 (547)
..+ ..+++|++|+|++|.+++.++..++ ..+++|++|+|++| .|++.++..|+. +..+++|++|+|++| .+++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~ 225 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGD 225 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence 111 2455666666666666665555443 34566666666666 566666555543 222334666666664 4566
Q ss_pred HHHHHHHHHhhcCCCCCccEEeeeCCC
Q 042559 409 VEVARFLTAVLTGDFKFLRHLDISNRE 435 (547)
Q Consensus 409 ~~l~~~l~~~l~~~~~~L~~L~Ls~c~ 435 (547)
.++..+... +. .+++|++|+|++|.
T Consensus 226 ~g~~~l~~~-L~-~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 226 TAALALARA-AR-EHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHH-HH-HCSSCCEEECTTSS
T ss_pred HHHHHHHHH-HH-hCCCCCEEeccCCC
Confidence 555333222 11 34566666666664
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.36 E-value=8.3e-14 Score=141.63 Aligned_cols=203 Identities=15% Similarity=0.101 Sum_probs=88.5
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCC--cchHHH
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKS--PTCVDF 335 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~--~~l~~~ 335 (547)
+|++|+|++|. ++ .+...+..+++|++|+|+++. ++ .+......+++|++|++++|.......... ..+...
T Consensus 105 ~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n~-l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 105 HLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARNP-LR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp TCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESCC-CC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred CCCEEECCCCC-cc--chhHHHhccCCCCEEECCCCc-cc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 45555555553 22 122223445555666655542 21 111112445556666665554332211100 000001
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHH
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFL 415 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l 415 (547)
+..+++|++|++++|.++. +..-...+++|++|+|++| .+++ ....+..++ +|++|+|++|...+....
T Consensus 179 ~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~N-~l~~-l~~~l~~l~---~L~~L~Ls~n~~~~~~p~---- 247 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNS-PLSA-LGPAIHHLP---KLEELDLRGCTALRNYPP---- 247 (328)
T ss_dssp EEESTTCCEEEEEEECCCC--CCGGGGGCTTCCEEEEESS-CCCC-CCGGGGGCT---TCCEEECTTCTTCCBCCC----
T ss_pred hccCCCCCEEECcCCCcCc--chHhhcCCCCCCEEEccCC-CCCc-CchhhccCC---CCCEEECcCCcchhhhHH----
Confidence 2235556666665554441 1111233555666666555 4442 111233333 255666655543332110
Q ss_pred HHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCccccccccccc
Q 042559 416 TAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSE 487 (547)
Q Consensus 416 ~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~ 487 (547)
..+.+++|++|+|++|..++..+..+..+++|+.+.+..+. +.+.+|...+.++.+..++..
T Consensus 248 ---~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-------~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 248 ---IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV-------NLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp ---CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT-------TCCCCCGGGGGSCTTCEEECC
T ss_pred ---HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC-------chhhccHHHhhccCceEEeCC
Confidence 01245556666666555555555555555555555555443 344555555544444444433
No 14
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.36 E-value=1.3e-12 Score=119.34 Aligned_cols=92 Identities=11% Similarity=0.185 Sum_probs=54.0
Q ss_pred CcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCC-CCCccEEeeeCCCCCCHHHHHHHHHHhh
Q 042559 341 NLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTG-GNLLEVLILRDCMHLKEVEVARFLTAVL 419 (547)
Q Consensus 341 ~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~-l~~L~~L~Ls~C~~L~~~~l~~~l~~~l 419 (547)
+|++|++++|.++|.++..+. +|++|++|+|++|..|||.++..|+...+ .++|++|+|++|++|||.++..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L----- 135 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL----- 135 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-----
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-----
Confidence 466666666666666666553 46666666666666666666666665310 01266666666666666666322
Q ss_pred cCCCCCccEEeeeCCCCCcc
Q 042559 420 TGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 420 ~~~~~~L~~L~Ls~c~~l~~ 439 (547)
..|++|++|+|++|+.+++
T Consensus 136 -~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 -HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -GGCTTCCEEEEESCTTCCC
T ss_pred -hcCCCCCEEECCCCCCCCc
Confidence 1356666666666666665
No 15
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=6.6e-12 Score=129.20 Aligned_cols=172 Identities=15% Similarity=0.065 Sum_probs=90.4
Q ss_pred CccEEEEeCCCCCCHHHHHHHH---hc-CCCccEEEEecCCCCCHHHHHHH---HhcCC-CccEEEecCCCCCCCCcCCC
Q 042559 258 LLRRLHLYNIERMDNASLSMAL---SA-CPSLLDLEIVGLHVELRQTLMSV---SMSCP-LLERLFFESSKTGRDDSLKS 329 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~---~~-~~~L~~L~Ls~c~~i~~~~l~~l---~~~~~-~L~~L~L~~c~~l~~~~l~~ 329 (547)
+|++|+|++|. +++.....+. .. +++|++|+|++| .+++.++..+ ...++ +|++|++++|. +++....
T Consensus 110 ~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~- 185 (362)
T 3goz_A 110 TITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCA- 185 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHH-
T ss_pred CccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHH-
Confidence 57777777663 4433333322 22 356777777766 4443333222 22333 67777777664 2222111
Q ss_pred cchHHHhcCC-CCcceEEeeccCCCHHHHHHHHh----cCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEEeeeCC
Q 042559 330 PTCVDFVNNC-PNLTSMALRGFKLPDYKIRILLK----GFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVLILRDC 403 (547)
Q Consensus 330 ~~l~~~~~~~-~~L~~L~L~~~~ltd~~l~~l~~----~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls~C 403 (547)
.+...+..+ ++|++|+|++|.+++.++..+.. ..++|++|+|++| .+++.+...++. +..+++|++|+|++|
T Consensus 186 -~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 186 -ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp -HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred -HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 122233444 37777777777666644333222 2346777777776 666655555544 344445777777766
Q ss_pred C--CCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCC
Q 042559 404 M--HLKEVEVARFLTAVLTGDFKFLRHLDISNREGL 437 (547)
Q Consensus 404 ~--~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l 437 (547)
. .+++.++..+... ...+++|+.|++++|..-
T Consensus 264 ~l~~i~~~~~~~l~~~--~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 264 IVKNMSKEQCKALGAA--FPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHTTCCHHHHHHHHTT--STTCCEEEEECTTSCBCC
T ss_pred CccccCHHHHHHHHHH--hccCCceEEEecCCCcCC
Confidence 4 4555555332221 125666777777776543
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.29 E-value=3.1e-13 Score=137.36 Aligned_cols=210 Identities=16% Similarity=0.123 Sum_probs=151.1
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+++.|+|+++.. + .+...+..+++|++|+|+++. ++ .+......+++|++|++++|. ++ .+. ..+.
T Consensus 82 ~l~~L~L~~n~l-~--~lp~~l~~l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n~-l~--~lp-----~~l~ 147 (328)
T 4fcg_A 82 GRVALELRSVPL-P--QFPDQAFRLSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARNP-LR--ALP-----ASIA 147 (328)
T ss_dssp TCCEEEEESSCC-S--SCCSCGGGGTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESCC-CC--CCC-----GGGG
T ss_pred ceeEEEccCCCc-h--hcChhhhhCCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCCCc-cc--cCc-----HHHh
Confidence 699999999853 3 233334568999999999984 33 111122678999999999986 33 333 3577
Q ss_pred CCCCcceEEeeccCCCHHHHHHH--------HhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHH
Q 042559 338 NCPNLTSMALRGFKLPDYKIRIL--------LKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEV 409 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l--------~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~ 409 (547)
.+++|++|++++|.+.......+ ..++++|++|+|++| .++ .....+..+++ |++|+|++|. ++..
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~-~lp~~l~~l~~---L~~L~L~~N~-l~~l 221 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR-SLPASIANLQN---LKSLKIRNSP-LSAL 221 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC-CCCGGGGGCTT---CCEEEEESSC-CCCC
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC-cchHhhcCCCC---CCEEEccCCC-CCcC
Confidence 89999999999975443222222 124899999999999 777 33344555554 9999999975 3321
Q ss_pred HHHHHHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCccccccccccccc
Q 042559 410 EVARFLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFN 489 (547)
Q Consensus 410 ~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n 489 (547)
.- ..+.+++|++|++++|...+..+..+..+++|+.+.+..+. +.+.+|...+.++.+..++...|
T Consensus 222 ~~-------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-------~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 222 GP-------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS-------NLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CG-------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT-------TCCBCCTTGGGCTTCCEEECTTC
T ss_pred ch-------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC-------chhhcchhhhcCCCCCEEeCCCC
Confidence 10 01368999999999999988888888999999999888765 56778888888888989999887
Q ss_pred ccC-ccccccccc
Q 042559 490 SEI-SLPSQLSSR 501 (547)
Q Consensus 490 ~~~-~~~~~~~~~ 501 (547)
... .+|..+..-
T Consensus 288 ~~~~~iP~~l~~L 300 (328)
T 4fcg_A 288 VNLSRLPSLIAQL 300 (328)
T ss_dssp TTCCCCCGGGGGS
T ss_pred CchhhccHHHhhc
Confidence 432 566655443
No 17
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=3.5e-12 Score=131.27 Aligned_cols=169 Identities=16% Similarity=0.096 Sum_probs=82.3
Q ss_pred CccEEEEeCCCCCCH---HHHHHHHhcC-CCccEEEEecCCCCCHHHHHHHH---hc-CCCccEEEecCCCCCCCCcCCC
Q 042559 258 LLRRLHLYNIERMDN---ASLSMALSAC-PSLLDLEIVGLHVELRQTLMSVS---MS-CPLLERLFFESSKTGRDDSLKS 329 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~---~~L~~l~~~~-~~L~~L~Ls~c~~i~~~~l~~l~---~~-~~~L~~L~L~~c~~l~~~~l~~ 329 (547)
+|++|+|++|. +++ ..+......+ ++|++|++++| .+++.+...+. .. +++|++|++++|. +++.+..
T Consensus 81 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~- 156 (362)
T 3goz_A 81 NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSD- 156 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHH-
T ss_pred CccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHH-
Confidence 46777776663 332 2233333344 56777777666 34433333322 22 3467777776664 3222211
Q ss_pred cchHHHhcCCC-CcceEEeeccCCCHHHHHHH---HhcC-CCCcEEeccCCCCCCHHHHHHHHc-CCC-CCCccEEeeeC
Q 042559 330 PTCVDFVNNCP-NLTSMALRGFKLPDYKIRIL---LKGF-RKLKYVDFSTSYSITGAFLRNLGS-GTG-GNLLEVLILRD 402 (547)
Q Consensus 330 ~~l~~~~~~~~-~L~~L~L~~~~ltd~~l~~l---~~~~-~~L~~L~Ls~c~~lt~~~l~~L~~-~~~-l~~L~~L~Ls~ 402 (547)
.+...+..++ +|++|++++|.+++.+...+ ...+ ++|++|+|++| .+++.++..++. ... .++|++|+|++
T Consensus 157 -~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 157 -ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp -HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred -HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 1122233343 67777777666554433322 2234 36777777766 566544433332 100 11367777766
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCC
Q 042559 403 CMHLKEVEVARFLTAVLTGDFKFLRHLDISNRE 435 (547)
Q Consensus 403 C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~ 435 (547)
| .+++.++..+. . ....+++|++|++++|.
T Consensus 235 N-~l~~~~~~~l~-~-~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 235 N-CLHGPSLENLK-L-LKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp S-CCCCCCHHHHH-H-TTTTTTTCSEEEEEHHH
T ss_pred C-CCCcHHHHHHH-H-HHhcCCCccEEEeccCC
Confidence 4 45544332221 1 12355667777776664
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.26 E-value=1.6e-11 Score=125.22 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=77.8
Q ss_pred hcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHH
Q 042559 280 SACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRI 359 (547)
Q Consensus 280 ~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~ 359 (547)
..+++|++|++++|.-..... ...+++|+.|++++|. +++ +. ....+++|++|++++|.+++...
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~--~~------~~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQ-ITD--IT------PVANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCC--CG------GGGGCTTCCEEECCSSCCCCCGG--
T ss_pred ccCCCCCEEEccCCccccccc----ccCCCccceeecccCC-CCC--Cc------hhhcCCcCCEEEccCCccCCCcc--
Confidence 345555555555542211111 1345555555555543 111 00 14456677777777765554332
Q ss_pred HHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 360 LLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 360 l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
...+++|++|++++| .+++. ..+..++ +|++|++++| .+++... .+.+++|+.|++++|.....
T Consensus 239 -~~~l~~L~~L~l~~n-~l~~~--~~~~~l~---~L~~L~l~~n-~l~~~~~--------~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTN-QISDI--NAVKDLT---KLKMLNVGSN-QISDISV--------LNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp -GTTCTTCCEEECCSS-CCCCC--GGGTTCT---TCCEEECCSS-CCCCCGG--------GGGCTTCSEEECCSSCCCGG
T ss_pred -hhcCCCCCEEECCCC-ccCCC--hhHhcCC---CcCEEEccCC-ccCCChh--------hcCCCCCCEEECcCCcCCCc
Confidence 345677777777776 55542 2222233 4777777765 3333211 12466777777777755444
Q ss_pred chhhhccCCCCCccchhhhh
Q 042559 440 EGDWYDRCFNSRIIPLKEVS 459 (547)
Q Consensus 440 ~~~~l~~c~~L~~l~l~~l~ 459 (547)
.++.+..+++|+.+.+..+.
T Consensus 303 ~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 303 DMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GHHHHHTCTTCSEEECCSSS
T ss_pred ChhHhhccccCCEEEccCCc
Confidence 55666667777766665544
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.25 E-value=4.7e-12 Score=133.99 Aligned_cols=216 Identities=16% Similarity=0.083 Sum_probs=109.8
Q ss_pred CCccEEEEeCCCCCCHHHHH-HHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 257 SLLRRLHLYNIERMDNASLS-MALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~-~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
++|++|+|++|. ++..... .....+++|++|+++++. ++......+..++++|++|++++|.. +...... +..+
T Consensus 103 ~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~--l~~l 177 (455)
T 3v47_A 103 ANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKV-KSICEED--LLNF 177 (455)
T ss_dssp TTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCB-SCCCTTT--SGGG
T ss_pred ccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcc-cccChhh--hhcc
Confidence 467777777773 3332222 124567778888877763 22211111125677788888877742 1111000 0000
Q ss_pred ------------------------------hcCCCCcceEEeeccCCCHHHHHHHHhc----------------------
Q 042559 336 ------------------------------VNNCPNLTSMALRGFKLPDYKIRILLKG---------------------- 363 (547)
Q Consensus 336 ------------------------------~~~~~~L~~L~L~~~~ltd~~l~~l~~~---------------------- 363 (547)
...+++|++|++++|.+++.....+...
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence 1133566777777766666555444331
Q ss_pred ----------------CCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCcc
Q 042559 364 ----------------FRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLR 427 (547)
Q Consensus 364 ----------------~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~ 427 (547)
+++|++|++++| .+++.....+..++ +|++|+|++|. ++.... ...+.+++|+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~---~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~ 326 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFALLKSVFSHFT---DLEQLTLAQNE-INKIDD------NAFWGLTHLL 326 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSS-CCCEECTTTTTTCT---TCCEEECTTSC-CCEECT------TTTTTCTTCC
T ss_pred hhhhccCcccccccccccCceEEEecCc-cccccchhhcccCC---CCCEEECCCCc-ccccCh------hHhcCcccCC
Confidence 134555555554 44332222222222 36666666643 221110 0112566777
Q ss_pred EEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCccc
Q 042559 428 HLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEISLP 495 (547)
Q Consensus 428 ~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~~~ 495 (547)
+|+|++|...+..+..+..+++|+.+.+..+. +.+..|...+.+..+..++...|....+|
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-------IRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCc-------ccccChhhccccccccEEECCCCccccCC
Confidence 77777765433345566667777766665554 33334555666677777777777533333
No 20
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=1.6e-11 Score=127.00 Aligned_cols=170 Identities=13% Similarity=0.022 Sum_probs=124.0
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHh----cCCCccEEEecCCCCCCCCcCCCcchH
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSM----SCPLLERLFFESSKTGRDDSLKSPTCV 333 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~----~~~~L~~L~L~~c~~l~~~~l~~~~l~ 333 (547)
+|+.|+|++| .+++.++..++..+++|++|+|++| .+++.++..++. .+++|++|+|++|. +++.+.. .+.
T Consensus 102 ~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~--~l~ 176 (372)
T 3un9_A 102 ALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVA--VLM 176 (372)
T ss_dssp CEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHH--HHH
T ss_pred CceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHH--HHH
Confidence 6999999999 6888888888888889999999999 788888777654 45789999999985 4443322 123
Q ss_pred HHhcCCCCcceEEeeccCCCHHHHHHHHh---cCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEEeeeCCCCCCHH
Q 042559 334 DFVNNCPNLTSMALRGFKLPDYKIRILLK---GFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVLILRDCMHLKEV 409 (547)
Q Consensus 334 ~~~~~~~~L~~L~L~~~~ltd~~l~~l~~---~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls~C~~L~~~ 409 (547)
..+..+++|++|+|++|.+++.++..++. .+++|++|+|++| .|++.+...++. +..+++|++|+|++| .+++.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~ 254 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSE 254 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHH
T ss_pred HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHH
Confidence 34567899999999999999988776653 5679999999999 999988877765 323335999999986 58998
Q ss_pred HHHHHHHHhhcCCCCCccEEe--eeCCC
Q 042559 410 EVARFLTAVLTGDFKFLRHLD--ISNRE 435 (547)
Q Consensus 410 ~l~~~l~~~l~~~~~~L~~L~--Ls~c~ 435 (547)
++..+. ......-..|+.+. +.++.
T Consensus 255 g~~~L~-~~~~~~~~~L~~l~~ll~~~~ 281 (372)
T 3un9_A 255 GRQVLR-DLGGAAEGGARVVVSLTEGTA 281 (372)
T ss_dssp HHHHHH-HCC------CEEECCCC----
T ss_pred HHHHHH-HHhcCCCccchhhHhhhcCCc
Confidence 885443 32211101277776 55543
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.22 E-value=6.9e-13 Score=133.84 Aligned_cols=248 Identities=15% Similarity=0.107 Sum_probs=161.7
Q ss_pred CCccEEEecccCCCCCCCccchhHHHHHhcCcccceeecCC--CcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEe
Q 042559 188 KSLQSLKLGIVPGPTASPWSCQSLVYTIRNSVDVSSFSWND--KKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLY 265 (547)
Q Consensus 188 ~~L~~L~L~~~~~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~--~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~ 265 (547)
..++.|+|+++.-.+. ..++..+.++.+++.|.+.+ ..... ....+. . .++|++|+|+
T Consensus 50 ~~l~~L~L~~~~l~~~-----~~~~~~l~~l~~L~~L~L~~~n~l~~~--~p~~l~-~------------l~~L~~L~Ls 109 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-----YPIPSSLANLPYLNFLYIGGINNLVGP--IPPAIA-K------------LTQLHYLYIT 109 (313)
T ss_dssp CCEEEEEEECCCCSSC-----EECCGGGGGCTTCSEEEEEEETTEESC--CCGGGG-G------------CTTCSEEEEE
T ss_pred ceEEEEECCCCCccCC-----cccChhHhCCCCCCeeeCCCCCccccc--CChhHh-c------------CCCCCEEECc
Confidence 4688888875432210 01223455677777777642 22211 111121 2 2379999999
Q ss_pred CCCCCCHHHHHHHHhcCCCccEEEEecCCCC--CHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCC-Cc
Q 042559 266 NIERMDNASLSMALSACPSLLDLEIVGLHVE--LRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCP-NL 342 (547)
Q Consensus 266 ~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i--~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~-~L 342 (547)
+|.. +. .+...+..+++|++|+++++.-. ....+ ..+++|++|++++|. ++. .+. ..+..++ +|
T Consensus 110 ~n~l-~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~L~~N~-l~~-~~p-----~~l~~l~~~L 176 (313)
T 1ogq_A 110 HTNV-SG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSI----SSLPNLVGITFDGNR-ISG-AIP-----DSYGSFSKLF 176 (313)
T ss_dssp EECC-EE-ECCGGGGGCTTCCEEECCSSEEESCCCGGG----GGCTTCCEEECCSSC-CEE-ECC-----GGGGCCCTTC
T ss_pred CCee-CC-cCCHHHhCCCCCCEEeCCCCccCCcCChHH----hcCCCCCeEECcCCc-ccC-cCC-----HHHhhhhhcC
Confidence 8854 21 12334567899999999987421 22233 678999999999886 221 122 2455566 89
Q ss_pred ceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCC
Q 042559 343 TSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGD 422 (547)
Q Consensus 343 ~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~ 422 (547)
++|++++|.++......+. .++ |++|++++| .+++.....+..++ +|++|+|+++..-.... ..+.
T Consensus 177 ~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls~N-~l~~~~~~~~~~l~---~L~~L~L~~N~l~~~~~--------~~~~ 242 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRN-MLEGDASVLFGSDK---NTQKIHLAKNSLAFDLG--------KVGL 242 (313)
T ss_dssp CEEECCSSEEEEECCGGGG-GCC-CSEEECCSS-EEEECCGGGCCTTS---CCSEEECCSSEECCBGG--------GCCC
T ss_pred cEEECcCCeeeccCChHHh-CCc-ccEEECcCC-cccCcCCHHHhcCC---CCCEEECCCCceeeecC--------cccc
Confidence 9999999876543333333 355 999999998 77654443344444 59999999875321111 1246
Q ss_pred CCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 423 FKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 423 ~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
+++|++|++++|...+..+..+..+++|+.+.+..+. +.+.+|.. +.+..+..++...|.
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-------l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-------LCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE-------EEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc-------ccccCCCC-ccccccChHHhcCCC
Confidence 8899999999998766677888999999999888776 78888876 567778888888885
No 22
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.19 E-value=6.6e-12 Score=91.44 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=40.4
Q ss_pred CCCCCCChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCccccc
Q 042559 120 FLAWPLPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYANID 166 (547)
Q Consensus 120 ~~~~~LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~~vd 166 (547)
..+..||+|++.+||+||+.++++++++|||+|+.++.++.+|+.+|
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 45899999999999999999999999999999999999999999875
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.18 E-value=3.2e-12 Score=144.69 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=41.1
Q ss_pred CCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 422 DFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
.+++|+.|+|++|...+..+..++++++|+.+.+..+. +.+.+|...+.++.+..++...|.
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~-------l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-------LDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-------CEECCCGGGGGCCCCSEEECCSSE
T ss_pred ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc-------ccCcCChHHhCCCCCCEEECcCCc
Confidence 46666666666666555566666666666666666555 666777776667777777777764
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.18 E-value=1.1e-11 Score=131.23 Aligned_cols=213 Identities=14% Similarity=0.053 Sum_probs=132.9
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCC--CCHHHHHHH-----------------------------
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHV--ELRQTLMSV----------------------------- 304 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~--i~~~~l~~l----------------------------- 304 (547)
.++|++|+|++|.. +...-..+...+++|++|+++++.- +....+..+
T Consensus 128 l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 128 LTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp CTTCCEEECCSSBC-CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred cccCCEEECCCCcc-CccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence 35899999999854 3221122357899999999999742 112222111
Q ss_pred -HhcCCCccEEEecCCCCCCCCcCC--------------------------------Cc-chHHHhcCCCCcceEEeecc
Q 042559 305 -SMSCPLLERLFFESSKTGRDDSLK--------------------------------SP-TCVDFVNNCPNLTSMALRGF 350 (547)
Q Consensus 305 -~~~~~~L~~L~L~~c~~l~~~~l~--------------------------------~~-~l~~~~~~~~~L~~L~L~~~ 350 (547)
...+++|++|++++|.. +..... .. ........+++|++|++++|
T Consensus 207 ~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGF-KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp CTTTTCEEEEEECTTSCC-CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred cccccceeeeEecCCCcc-cccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc
Confidence 01235688888887752 110000 00 00000012368999999998
Q ss_pred CCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEe
Q 042559 351 KLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLD 430 (547)
Q Consensus 351 ~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~ 430 (547)
.+++.....+ ..+++|++|+|++| .+++.....+..++ +|++|+|++|. ++.... ...+.+++|++|+
T Consensus 286 ~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~---~L~~L~Ls~N~-l~~~~~------~~~~~l~~L~~L~ 353 (455)
T 3v47_A 286 KIFALLKSVF-SHFTDLEQLTLAQN-EINKIDDNAFWGLT---HLLKLNLSQNF-LGSIDS------RMFENLDKLEVLD 353 (455)
T ss_dssp CCCEECTTTT-TTCTTCCEEECTTS-CCCEECTTTTTTCT---TCCEEECCSSC-CCEECG------GGGTTCTTCCEEE
T ss_pred cccccchhhc-ccCCCCCEEECCCC-cccccChhHhcCcc---cCCEEECCCCc-cCCcCh------hHhcCcccCCEEE
Confidence 8775433333 45899999999999 77765444444444 59999999974 433211 0124789999999
Q ss_pred eeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCC-CCcccccccccccccc
Q 042559 431 ISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSE-GSFIDIEQMVDSEFNS 490 (547)
Q Consensus 431 Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~-~~~~~~~~~l~~~~n~ 490 (547)
|++|...+..+..+..+++|+.+.+..+. + ..+|.. ...++.+..++...|.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-------l-~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQ-------L-KSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSC-------C-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcccccChhhccccccccEEECCCCc-------c-ccCCHhHhccCCcccEEEccCCC
Confidence 99997654467788899999998887654 2 134443 3566777778888774
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.17 E-value=1.8e-11 Score=130.43 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=62.9
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHH
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFL 415 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l 415 (547)
+.++++|+.|++.+|.++...... ...+++|++|+|++|..+.. ....+.. ..+|++|+|++|. ++.... ..
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~~~~~~---~~~L~~L~l~~n~-l~~~~~-~~- 243 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDT-MTPNCLY---GLNLTSLSITHCN-LTAVPY-LA- 243 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTC-SCSCTTCCEEEEECCTTCCE-ECTTTTT---TCCCSEEEEESSC-CCSCCH-HH-
T ss_pred hcccCCCcEEeCCCCcCcEeChhh-cccCcccceeeCCCCccccc-cCccccc---CccccEEECcCCc-ccccCH-HH-
Confidence 444555555555554443221111 12345555555555422211 1111111 1136666666642 332211 00
Q ss_pred HHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 416 TAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 416 ~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
.+.+++|+.|+|++|....-....+..+++|+.+.+.... +.+..|.....+..+..++...|.
T Consensus 244 ----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 244 ----VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-------LAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp ----HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-------CSEECTTTBTTCTTCCEEECCSSC
T ss_pred ----hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-------cceECHHHhcCcccCCEEECCCCc
Confidence 1357778888887776443344556677777766655443 222223334444555555555554
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.16 E-value=5.7e-11 Score=121.00 Aligned_cols=190 Identities=13% Similarity=0.047 Sum_probs=107.5
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|++|++++|..++.. .. ...+++|++|++++|....... ...+++|++|++++|. +++ +. ...
T Consensus 133 ~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~-l~~--~~------~~~ 196 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDL--SP-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQ-IED--IS------PLA 196 (347)
T ss_dssp TCCEEECTTCTTCCCC--GG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSC-CCC--CG------GGG
T ss_pred ceeEEECCCCCCcccc--cc-hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCc-ccc--cc------ccc
Confidence 5677777666544321 11 3556677777777664322222 2566777777777664 211 11 245
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHH
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTA 417 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~ 417 (547)
.+++|+.|++.+|.+++... ...+++|++|++++| .+++... +..++ +|++|++++|. +++..
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n-~l~~~~~--~~~l~---~L~~L~l~~n~-l~~~~------- 259 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN-KITDLSP--LANLS---QLTWLEIGTNQ-ISDIN------- 259 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGG--GTTCT---TCCEEECCSSC-CCCCG-------
T ss_pred CCCccceeecccCCCCCCch---hhcCCcCCEEEccCC-ccCCCcc--hhcCC---CCCEEECCCCc-cCCCh-------
Confidence 57777777777776654332 345778888888887 5654322 33344 48888888763 33321
Q ss_pred hhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 418 VLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 418 ~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
....+++|++|++++|.. +.. ..+..+++|+.+.+.... +.+..|...+.++.+..++...|.
T Consensus 260 -~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 260 -AVKDLTKLKMLNVGSNQI-SDI-SVLNNLSQLNSLFLNNNQ-------LGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp -GGTTCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSC-------CCGGGHHHHHTCTTCSEEECCSSS
T ss_pred -hHhcCCCcCEEEccCCcc-CCC-hhhcCCCCCCEEECcCCc-------CCCcChhHhhccccCCEEEccCCc
Confidence 013677888888888743 332 456677777777665543 211222223344555566666664
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.15 E-value=1.2e-12 Score=148.17 Aligned_cols=147 Identities=21% Similarity=0.169 Sum_probs=104.8
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHH
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARF 414 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~ 414 (547)
.+.++++|++|++++|.+++.....+ ..+++|++|++++| .+++.....+..+++ |++|+|++|........
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~~p~--- 484 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLN-MLEGEIPQELMYVKT---LETLILDFNDLTGEIPS--- 484 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSS-CCCSCCCGGGGGCTT---CCEEECCSSCCCSCCCG---
T ss_pred HHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCC-cccCcCCHHHcCCCC---ceEEEecCCcccCcCCH---
Confidence 56678888888888876654333333 34788888888888 676655555655554 88999988753211100
Q ss_pred HHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccC-c
Q 042559 415 LTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEI-S 493 (547)
Q Consensus 415 l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~-~ 493 (547)
..+.+++|++|+|++|...+..+.++..+++|+.+.+..+. +.+.+|...+.+..++.++...|... .
T Consensus 485 ----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-------l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 485 ----GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS-------FSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp ----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-------CEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred ----HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc-------ccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 11368889999999998776777888889999888887776 77888888888888888998888532 5
Q ss_pred ccccccc
Q 042559 494 LPSQLSS 500 (547)
Q Consensus 494 ~~~~~~~ 500 (547)
+|..+..
T Consensus 554 ip~~~~~ 560 (768)
T 3rgz_A 554 IPAAMFK 560 (768)
T ss_dssp CCGGGGT
T ss_pred CChHHhc
Confidence 6665544
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.14 E-value=8.9e-12 Score=132.15 Aligned_cols=209 Identities=12% Similarity=-0.031 Sum_probs=122.0
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
+++|+.|+|+++. ++.. ....+..+++|++|+|+++. ++.... ....++++|++|+|++|. ++.... ..
T Consensus 74 ~~~l~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~------~~ 142 (452)
T 3zyi_A 74 PSNTRYLNLMENN-IQMI-QADTFRHLHHLEVLQLGRNS-IRQIEV-GAFNGLASLNTLELFDNW-LTVIPS------GA 142 (452)
T ss_dssp CTTCSEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CSBCCT------TT
T ss_pred CCCccEEECcCCc-CceE-CHHHcCCCCCCCEEECCCCc-cCCcCh-hhccCcccCCEEECCCCc-CCccCh------hh
Confidence 4578888888874 3321 11223568888888888863 322110 111567888888888875 332211 24
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHH
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFL 415 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l 415 (547)
...+++|++|++++|.++..... ....+++|++|+|++|..++......+.. +++|++|+|++|. ++...
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~---l~~L~~L~L~~n~-l~~~~----- 212 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSY-AFNRVPSLMRLDLGELKKLEYISEGAFEG---LFNLKYLNLGMCN-IKDMP----- 212 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEECCCCTTCCEECTTTTTT---CTTCCEEECTTSC-CSSCC-----
T ss_pred hcccCCCCEEECCCCCcceeCHh-HHhcCCcccEEeCCCCCCccccChhhccC---CCCCCEEECCCCc-ccccc-----
Confidence 55678888888888876632221 23357888888888875554322222333 3348888888763 33221
Q ss_pred HHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCccc
Q 042559 416 TAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEISLP 495 (547)
Q Consensus 416 ~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~~~ 495 (547)
....+++|+.|+|++|...+..+..+..+++|+.+.+..+. +....+.....+..+..+++..|....+|
T Consensus 213 ---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 213 ---NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-------VSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp ---CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ---cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-------CceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 01356778888888776554456667777777777665544 22233334445556666666666433333
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.12 E-value=1.4e-11 Score=130.23 Aligned_cols=176 Identities=14% Similarity=0.044 Sum_probs=90.3
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCC---HHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcch
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVEL---RQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTC 332 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~---~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l 332 (547)
+++++.|+|+++. ++.-. ...+..+++|++|+|+++. ++ ...+ .++++|++|+|++|. ++....
T Consensus 63 ~~~l~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~----~~l~~L~~L~L~~n~-l~~~~~----- 129 (440)
T 3zyj_A 63 STNTRLLNLHENQ-IQIIK-VNSFKHLRHLEILQLSRNH-IRTIEIGAF----NGLANLNTLELFDNR-LTTIPN----- 129 (440)
T ss_dssp CTTCSEEECCSCC-CCEEC-TTTTSSCSSCCEEECCSSC-CCEECGGGG----TTCSSCCEEECCSSC-CSSCCT-----
T ss_pred CCCCcEEEccCCc-CCeeC-HHHhhCCCCCCEEECCCCc-CCccChhhc----cCCccCCEEECCCCc-CCeeCH-----
Confidence 3467777777763 22111 1223456777777777763 22 1222 556777777777764 332211
Q ss_pred HHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHH
Q 042559 333 VDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVA 412 (547)
Q Consensus 333 ~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~ 412 (547)
..+..+++|++|+|++|.++..... ....+++|++|+|++|..++......+.. +++|++|+|++|. ++...
T Consensus 130 -~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~---l~~L~~L~L~~n~-l~~~~-- 201 (440)
T 3zyj_A 130 -GAFVYLSKLKELWLRNNPIESIPSY-AFNRIPSLRRLDLGELKRLSYISEGAFEG---LSNLRYLNLAMCN-LREIP-- 201 (440)
T ss_dssp -TTSCSCSSCCEEECCSCCCCEECTT-TTTTCTTCCEEECCCCTTCCEECTTTTTT---CSSCCEEECTTSC-CSSCC--
T ss_pred -hHhhccccCceeeCCCCcccccCHH-HhhhCcccCEeCCCCCCCcceeCcchhhc---ccccCeecCCCCc-Ccccc--
Confidence 1344567777777777655532211 12346667777776654444322112222 3346667666652 32211
Q ss_pred HHHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhh
Q 042559 413 RFLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEV 458 (547)
Q Consensus 413 ~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l 458 (547)
....+++|+.|+|++|....-.+..+..+++|+.+.+..+
T Consensus 202 ------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 202 ------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp ------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 0124566666666666433334455566666666555443
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.12 E-value=3.3e-12 Score=126.75 Aligned_cols=180 Identities=14% Similarity=0.109 Sum_probs=87.0
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|++|+|+++. ++... ...+..+++|++|+|+++ .++.... ....++++|++|++++|..++..... .+
T Consensus 32 ~~l~~L~l~~n~-i~~~~-~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~------~~ 101 (285)
T 1ozn_A 32 AASQRIFLHGNR-ISHVP-AASFRACRNLTILWLHSN-VLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPA------TF 101 (285)
T ss_dssp TTCSEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTT------TT
T ss_pred CCceEEEeeCCc-CCccC-HHHcccCCCCCEEECCCC-ccceeCH-hhcCCccCCCEEeCCCCCCccccCHH------Hh
Confidence 456677776663 22210 112345666777776665 2221100 01145666777777666433332211 34
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|++|++++|.++...... ...+++|++|++++| .++......+..++ +|++|+|+++ .++....
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~---~L~~L~l~~n-~l~~~~~----- 170 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDN-ALQALPDDTFRDLG---NLTHLFLHGN-RISSVPE----- 170 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCT---TCCEEECCSS-CCCEECT-----
T ss_pred cCCcCCCEEECCCCcCCEECHhH-hhCCcCCCEEECCCC-cccccCHhHhccCC---CccEEECCCC-cccccCH-----
Confidence 45666666666666554322211 234666666666666 45432222222233 3666666664 2332111
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhh
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEV 458 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l 458 (547)
...+.+++|++|++++|...+..+..+..+++|+.+.+...
T Consensus 171 -~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 171 -RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp -TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 00124566666666666543334455566666666555443
No 31
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.11 E-value=3.8e-11 Score=112.44 Aligned_cols=148 Identities=20% Similarity=0.182 Sum_probs=82.6
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|++|+++++.. ++ +. -...+++|++|++++|.......+ ..+++|++|++++|. +++.... .+.
T Consensus 45 ~L~~L~l~~n~i-~~--l~-~l~~l~~L~~L~l~~n~~~~~~~l----~~l~~L~~L~l~~n~-l~~~~~~------~l~ 109 (197)
T 4ezg_A 45 SLTYITLANINV-TD--LT-GIEYAHNIKDLTINNIHATNYNPI----SGLSNLERLRIMGKD-VTSDKIP------NLS 109 (197)
T ss_dssp TCCEEEEESSCC-SC--CT-TGGGCTTCSEEEEESCCCSCCGGG----TTCTTCCEEEEECTT-CBGGGSC------CCT
T ss_pred CccEEeccCCCc-cC--hH-HHhcCCCCCEEEccCCCCCcchhh----hcCCCCCEEEeECCc-cCcccCh------hhc
Confidence 577777777633 31 22 245667777777777732222222 456777777777664 3322222 334
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHH
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTA 417 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~ 417 (547)
.+++|++|++++|.+++..+..+. .+++|++|++++|..+++. ..+..+++ |++|++++|. +++...
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~--~~l~~l~~---L~~L~l~~n~-i~~~~~------ 176 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDI--MPLKTLPE---LKSLNIQFDG-VHDYRG------ 176 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCC--GGGGGCSS---CCEEECTTBC-CCCCTT------
T ss_pred CCCCCCEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcccc--HhhcCCCC---CCEEECCCCC-CcChHH------
Confidence 567777777777777665555454 3677777777776325442 13333443 7777777653 333210
Q ss_pred hhcCCCCCccEEeeeCCC
Q 042559 418 VLTGDFKFLRHLDISNRE 435 (547)
Q Consensus 418 ~l~~~~~~L~~L~Ls~c~ 435 (547)
...+++|++|++++|+
T Consensus 177 --l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 177 --IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp --GGGCSSCCEEEECBC-
T ss_pred --hccCCCCCEEEeeCcc
Confidence 1246677777777664
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.10 E-value=5e-11 Score=111.62 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=114.5
Q ss_pred cCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHH
Q 042559 281 ACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRIL 360 (547)
Q Consensus 281 ~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l 360 (547)
.+++|++|+++++.-..-.++ ..+++|++|++++|. +++. . .+..+++|++|++++|.+++..+..+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l----~~l~~L~~L~l~~n~-~~~~--~------~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGI----EYAHNIKDLTINNIH-ATNY--N------PISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTG----GGCTTCSEEEEESCC-CSCC--G------GGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred hcCCccEEeccCCCccChHHH----hcCCCCCEEEccCCC-CCcc--h------hhhcCCCCCEEEeECCccCcccChhh
Confidence 467899999999743221234 788999999999983 3322 1 45679999999999999987655555
Q ss_pred HhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccc
Q 042559 361 LKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASE 440 (547)
Q Consensus 361 ~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~ 440 (547)
. .+++|++|++++| .+++..+..++.+++ |++|+|++|..+++... .+.+++|++|++++|.. ++.
T Consensus 109 ~-~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~---L~~L~L~~n~~i~~~~~--------l~~l~~L~~L~l~~n~i-~~~ 174 (197)
T 4ezg_A 109 S-GLTSLTLLDISHS-AHDDSILTKINTLPK---VNSIDLSYNGAITDIMP--------LKTLPELKSLNIQFDGV-HDY 174 (197)
T ss_dssp T-TCTTCCEEECCSS-BCBGGGHHHHTTCSS---CCEEECCSCTBCCCCGG--------GGGCSSCCEEECTTBCC-CCC
T ss_pred c-CCCCCCEEEecCC-ccCcHhHHHHhhCCC---CCEEEccCCCCccccHh--------hcCCCCCCEEECCCCCC-cCh
Confidence 4 5899999999999 899877788877765 99999999875665421 13689999999999964 443
Q ss_pred hhhhccCCCCCccchhhhh
Q 042559 441 GDWYDRCFNSRIIPLKEVS 459 (547)
Q Consensus 441 ~~~l~~c~~L~~l~l~~l~ 459 (547)
. .+..+++|+.+.+..+.
T Consensus 175 ~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp T-TGGGCSSCCEEEECBC-
T ss_pred H-HhccCCCCCEEEeeCcc
Confidence 2 67888999888776544
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.09 E-value=2.5e-12 Score=141.29 Aligned_cols=106 Identities=22% Similarity=0.192 Sum_probs=45.2
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCC---CHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVE---LRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i---~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
+|++|++++|.. +.. .......+++|++|++++|... ....+ ..+++|++|++++|......... .
T Consensus 302 ~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~-----~ 370 (606)
T 3t6q_A 302 TLKKLVLSANKF-ENL-CQISASNFPSLTHLSIKGNTKRLELGTGCL----ENLENLRELDLSHDDIETSDCCN-----L 370 (606)
T ss_dssp TCCEEECTTCCC-SBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTT----TTCTTCCEEECCSSCCCEEEEST-----T
T ss_pred cCCEEECccCCc-CcC-chhhhhccCcCCEEECCCCCcccccchhhh----hccCcCCEEECCCCccccccCcc-----h
Confidence 566666665532 211 1122344566666666655311 11112 34555666666555421110001 1
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCC
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTS 375 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c 375 (547)
.+..+++|++|++++|.+++.....+ ..+++|++|++++|
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAF-KECPQLELLDLAFT 410 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTT-TTCTTCSEEECTTC
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHh-cCCccCCeEECCCC
Confidence 23345555555555554432221112 23455555555555
No 34
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.06 E-value=2.8e-09 Score=98.80 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCC
Q 042559 273 ASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKL 352 (547)
Q Consensus 273 ~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~l 352 (547)
..+..+...+++|++|+|++|..+.+.++..++. .+..+++|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~----------------------------~L~~~~~L~~L~Ls~n~i 77 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAE----------------------------ALKTNTYVKKFSIVGTRS 77 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHH----------------------------HHTTCCSCCEEECTTSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH----------------------------HHHhCCCcCEEECcCCCC
Confidence 3455555666667777776665566666655543 223345566666666666
Q ss_pred CHHHHHHHHh---cCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEEeee-CCCCCCHHHHHHHHHHhhcCCCCCcc
Q 042559 353 PDYKIRILLK---GFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVLILR-DCMHLKEVEVARFLTAVLTGDFKFLR 427 (547)
Q Consensus 353 td~~l~~l~~---~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls-~C~~L~~~~l~~~l~~~l~~~~~~L~ 427 (547)
++++...+++ ..+.|++|+|++| .|++.+...++. +...++|++|+|+ ..+.+++.+...+... +. ..++|+
T Consensus 78 ~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~-~n~~L~ 154 (185)
T 1io0_A 78 NDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LE-KNTTLL 154 (185)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HH-HCSSCC
T ss_pred ChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HH-hCCCcC
Confidence 6665554433 2356666666666 666666666554 3333446666663 1345666655333222 11 345666
Q ss_pred EEeeeCCC
Q 042559 428 HLDISNRE 435 (547)
Q Consensus 428 ~L~Ls~c~ 435 (547)
+|+|++|.
T Consensus 155 ~L~L~~n~ 162 (185)
T 1io0_A 155 KFGYHFTQ 162 (185)
T ss_dssp EEECCCSS
T ss_pred EEeccCCC
Confidence 66666653
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.05 E-value=6e-12 Score=138.25 Aligned_cols=234 Identities=13% Similarity=0.047 Sum_probs=103.4
Q ss_pred cCCccEEEecccCCCCCCCccchhHHHHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeC
Q 042559 187 GKSLQSLKLGIVPGPTASPWSCQSLVYTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYN 266 (547)
Q Consensus 187 ~~~L~~L~L~~~~~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~ 266 (547)
.+.|++|+++++.-. ..+. .+..+.+++.|.+.+.... +.....+ ..+ ++|++|++++
T Consensus 277 l~~L~~L~l~~n~l~-~lp~-------~l~~l~~L~~L~l~~n~l~-~~~~~~~-~~l------------~~L~~L~l~~ 334 (606)
T 3t6q_A 277 FSGLQELDLTATHLS-ELPS-------GLVGLSTLKKLVLSANKFE-NLCQISA-SNF------------PSLTHLSIKG 334 (606)
T ss_dssp CTTCSEEECTTSCCS-CCCS-------SCCSCTTCCEEECTTCCCS-BGGGGCG-GGC------------TTCSEEECCS
T ss_pred ccCCCEEeccCCccC-CCCh-------hhcccccCCEEECccCCcC-cCchhhh-hcc------------CcCCEEECCC
Confidence 367889998765321 2221 1344567777766543211 1100011 112 2566666666
Q ss_pred CCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEE
Q 042559 267 IERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMA 346 (547)
Q Consensus 267 c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~ 346 (547)
|.....- -......+++|++|+++++.-............+++|++|++++|. ++... . ..+..+++|++|+
T Consensus 335 n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~-----~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 335 NTKRLEL-GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLK-T-----EAFKECPQLELLD 406 (606)
T ss_dssp CSSCCBC-CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEEC-T-----TTTTTCTTCSEEE
T ss_pred CCccccc-chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCC-H-----HHhcCCccCCeEE
Confidence 6322100 0011235666666666665321110000011455666666666654 11111 1 1334456666666
Q ss_pred eeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCc
Q 042559 347 LRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFL 426 (547)
Q Consensus 347 L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L 426 (547)
+++|.++..........+++|++|++++| .+++.....+..++ +|++|+|++|. +++..+.. ....+.+++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~---~L~~L~L~~n~-l~~~~~~~---~~~~~~l~~L 478 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLP---ALQHLNLQGNH-FPKGNIQK---TNSLQTLGRL 478 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCT---TCCEEECTTCB-CGGGEECS---SCGGGGCTTC
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCHHHHhCCC---CCCEEECCCCC-CCcccccc---chhhccCCCc
Confidence 66654433222222234556666666665 44443333333333 36666666543 21100000 0001245556
Q ss_pred cEEeeeCCCCCccchhhhccCCCCCccchhhh
Q 042559 427 RHLDISNREGLASEGDWYDRCFNSRIIPLKEV 458 (547)
Q Consensus 427 ~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l 458 (547)
+.|++++|...+..+..+..+++|+.+.+..+
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 66666665443334445555555555554443
No 36
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=117.34 Aligned_cols=212 Identities=17% Similarity=0.064 Sum_probs=127.7
Q ss_pred CccEEEEeCCCCCCHHHHHHHHh--cCCCccEEEEecCCCCCHHHHHHHH-hcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 258 LLRRLHLYNIERMDNASLSMALS--ACPSLLDLEIVGLHVELRQTLMSVS-MSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~--~~~~L~~L~Ls~c~~i~~~~l~~l~-~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
.++.|.+.++ .+++..+..+.. .+++|++|++++|. ++......+. ..+++|++|++++|. ++..... .-..
T Consensus 65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~--~~~~ 139 (310)
T 4glp_A 65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVS-WATGRSW--LAEL 139 (310)
T ss_dssp CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSS--HHHH
T ss_pred ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeeccc-ccchhhh--hHHH
Confidence 5788888887 566666655443 35679999999874 2221111111 457789999999886 3221110 0001
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEEeeeCCCCCCHHH-HH
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVLILRDCMHLKEVE-VA 412 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls~C~~L~~~~-l~ 412 (547)
....+++|++|++++|.++......+ ..+++|++|+|++| .+++..-..... ...+++|++|+|++|. ++..+ +.
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~ 216 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQV-RAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVC 216 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSC-CCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHh-ccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHH
Confidence 22368899999999987754332222 35788999999998 555432211111 2345569999999874 54322 11
Q ss_pred HHHHHhhcCCCCCccEEeeeCCCCCccchhhhccC---CCCCccchhhhhhcCCCcEEEeecCCCCCccccccccccccc
Q 042559 413 RFLTAVLTGDFKFLRHLDISNREGLASEGDWYDRC---FNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFN 489 (547)
Q Consensus 413 ~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c---~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n 489 (547)
..+. +.+++|++|+|++|......+..+..+ ++|+.+.+..+. +. .+|.... ..+..+++..|
T Consensus 217 ~~l~----~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-------l~-~lp~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 217 AALA----AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-------LE-QVPKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp HHHH----HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-------CC-SCCSCCC--SCCSCEECCSC
T ss_pred HHHH----hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-------CC-chhhhhc--CCCCEEECCCC
Confidence 1111 257889999999987555445555555 678877776654 21 3454442 56667888888
Q ss_pred cc
Q 042559 490 SE 491 (547)
Q Consensus 490 ~~ 491 (547)
..
T Consensus 283 ~l 284 (310)
T 4glp_A 283 RL 284 (310)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.04 E-value=5.7e-11 Score=117.12 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=63.0
Q ss_pred cCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHH
Q 042559 281 ACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRIL 360 (547)
Q Consensus 281 ~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l 360 (547)
.+++|++|+++++.-.....+ ..+++|++|++++|. ++.... .....+++|++|++++|.++..... .
T Consensus 61 ~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~L~~n~-l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~-~ 128 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDISAL----KELTNLTYLILTGNQ-LQSLPN------GVFDKLTNLKELVLVENQLQSLPDG-V 128 (272)
T ss_dssp GCTTCCEEECTTSCCCCCGGG----TTCTTCCEEECTTSC-CCCCCT------TTTTTCTTCCEEECTTSCCCCCCTT-T
T ss_pred cCCCCcEEECCCCCCCCchhh----cCCCCCCEEECCCCc-cCccCh------hHhcCCcCCCEEECCCCcCCccCHH-H
Confidence 455555555555422111111 345555555555543 221111 1234455555555555544421111 1
Q ss_pred HhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccc
Q 042559 361 LKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASE 440 (547)
Q Consensus 361 ~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~ 440 (547)
...+++|++|++++| .+++.....+..+ ++|++|++++|. ++.... ...+.+++|++|++++|...+-.
T Consensus 129 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l---~~L~~L~l~~n~-l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHN-QLQSLPKGVFDKL---TNLTELDLSYNQ-LQSLPE------GVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTC---TTCCEEECCSSC-CCCCCT------TTTTTCTTCCEEECCSSCCSCCC
T ss_pred hccCCCCCEEECCCC-ccCccCHHHhccC---ccCCEEECCCCC-cCccCH------HHhcCCccCCEEECCCCcCCccC
Confidence 123455555555555 4442211112222 235555555542 221110 00124455555555555433323
Q ss_pred hhhhccCCCCCccchhh
Q 042559 441 GDWYDRCFNSRIIPLKE 457 (547)
Q Consensus 441 ~~~l~~c~~L~~l~l~~ 457 (547)
+..+..+++|+.+.+..
T Consensus 198 ~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp TTTTTTCTTCCEEECCS
T ss_pred HHHHhCCcCCCEEEccC
Confidence 33344555555444433
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.04 E-value=6.6e-11 Score=126.10 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=43.1
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCH---HHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELR---QTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~---~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
+|+.|+|+++. ++.-. ...+..+++|++|+|+++ .++. ..+ .++++|++|+|++|. ++.... .
T Consensus 33 ~l~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~------~ 98 (477)
T 2id5_A 33 ETRLLDLGKNR-IKTLN-QDEFASFPHLEELELNEN-IVSAVEPGAF----NNLFNLRTLGLRSNR-LKLIPL------G 98 (477)
T ss_dssp TCSEEECCSSC-CCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTTT----TTCTTCCEEECCSSC-CCSCCT------T
T ss_pred CCcEEECCCCc-cceEC-HhHccCCCCCCEEECCCC-ccCEeChhhh----hCCccCCEEECCCCc-CCccCc------c
Confidence 45555555552 22110 112234555555555554 2211 112 345555555555543 221111 1
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCC
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTS 375 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c 375 (547)
.+.++++|++|+|++|.++......+ ..+++|++|+|++|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n 138 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLEVGDN 138 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEECCT
T ss_pred cccCCCCCCEEECCCCccccCChhHc-cccccCCEEECCCC
Confidence 23344555555555554432211111 23455555555554
No 39
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=4.2e-09 Score=108.10 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=117.1
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHh-cCCCccEEEecCCCC--CCCCcCCCcchH
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSM-SCPLLERLFFESSKT--GRDDSLKSPTCV 333 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~-~~~~L~~L~L~~c~~--l~~~~l~~~~l~ 333 (547)
|+|+.|.|.++..+. +..+ .+++|++|+|..| .++..++..++. .+|+|++|+|+.+.. ..+..+. .+.
T Consensus 172 P~L~~L~L~g~~~l~---l~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~--~l~ 243 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLS---IGKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN--VFR 243 (362)
T ss_dssp TTCCEEEEECCBTCB---CCSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG--GTG
T ss_pred CCCcEEEEeCCCCce---eccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHH--HHH
Confidence 379999999884332 2221 3789999999987 688888888874 699999999964321 1121111 011
Q ss_pred HHh--cCCCCcceEEeeccCCCHHHHHHHHh--cCCCCcEEeccCCCCCCHHHHHHHHcC-CCCCCccEEeeeCCCCCCH
Q 042559 334 DFV--NNCPNLTSMALRGFKLPDYKIRILLK--GFRKLKYVDFSTSYSITGAFLRNLGSG-TGGNLLEVLILRDCMHLKE 408 (547)
Q Consensus 334 ~~~--~~~~~L~~L~L~~~~ltd~~l~~l~~--~~~~L~~L~Ls~c~~lt~~~l~~L~~~-~~l~~L~~L~Ls~C~~L~~ 408 (547)
..+ ..+|+|++|+|.+|.+++.+...++. .+|+|++|+|+.| .+++.+...+... .++++|+.|+|++| .+++
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d 321 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSD 321 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-cCCH
Confidence 122 35899999999999999888777765 5789999999987 8999998888753 44556999999987 5999
Q ss_pred HHHHHHHHHhhcCCCCCccEEeeeCCC
Q 042559 409 VEVARFLTAVLTGDFKFLRHLDISNRE 435 (547)
Q Consensus 409 ~~l~~~l~~~l~~~~~~L~~L~Ls~c~ 435 (547)
.++..+... + ...++++++.
T Consensus 322 ~~~~~l~~a-----l--g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKS-----L--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHH-----C--CSEEECCSBC
T ss_pred HHHHHHHHH-----c--CCEEEecCCc
Confidence 988544332 1 4568888775
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.02 E-value=9.8e-12 Score=124.55 Aligned_cols=178 Identities=16% Similarity=0.117 Sum_probs=89.5
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|++|+|++|.. +. +......+++|++|+++++. ++..........+++|++|++++|. ++... . ..+.
T Consensus 79 ~L~~L~Ls~n~i-~~--l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~-----~~~~ 147 (306)
T 2z66_A 79 SLKYLDLSFNGV-IT--MSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAF-N-----GIFN 147 (306)
T ss_dssp CCCEEECCSCSE-EE--EEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECS-T-----TTTT
T ss_pred ccCEEECCCCcc-cc--ChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccc-h-----hhcc
Confidence 577777776632 11 11112356677777776652 1111000112456677777777664 21111 1 1344
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHH
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTA 417 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~ 417 (547)
.+++|++|++++|.+++..+......+++|++|++++| .+++.....+..++ +|++|+|++|. ++....
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~---~L~~L~L~~N~-l~~~~~------ 216 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS---SLQVLNMSHNN-FFSLDT------ 216 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCT---TCCEEECTTSC-CSBCCS------
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCC---CCCEEECCCCc-cCccCh------
Confidence 56677777777765544222222334667777777776 55543333333333 37777777653 222111
Q ss_pred hhcCCCCCccEEeeeCCCCCccchhhhccCC-CCCccchhh
Q 042559 418 VLTGDFKFLRHLDISNREGLASEGDWYDRCF-NSRIIPLKE 457 (547)
Q Consensus 418 ~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~-~L~~l~l~~ 457 (547)
...+.+++|++|++++|...+..+..+..++ +|+.+.+..
T Consensus 217 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 0013566777777777755444444555553 565554443
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.00 E-value=7.6e-10 Score=117.68 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=47.4
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|++|++++|.+++... ...+++|++|++++| .+++.. .+..++ +|++|+|++|. +++...
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~--~~~~l~---~L~~L~L~~n~-l~~~~~----- 326 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP---LAGLTALTNLELNEN-QLEDIS--PISNLK---NLTYLTLYFNN-ISDISP----- 326 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSS-CCSCCG--GGGGCT---TCSEEECCSSC-CSCCGG-----
T ss_pred hcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCC-cccCch--hhcCCC---CCCEEECcCCc-CCCchh-----
Confidence 345555555555554443221 233555666666555 444321 123333 26666666553 222110
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhh
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEV 458 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l 458 (547)
.+.+++|+.|++++|.. ++. ..+..+++|+.+.+..+
T Consensus 327 ---~~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 327 ---VSSLTKLQRLFFYNNKV-SDV-SSLANLTNINWLSAGHN 363 (466)
T ss_dssp ---GGGCTTCCEEECCSSCC-CCC-GGGTTCTTCCEEECCSS
T ss_pred ---hccCccCCEeECCCCcc-CCc-hhhccCCCCCEEeCCCC
Confidence 12455666666666533 222 34555566655555443
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.00 E-value=8.9e-10 Score=112.62 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=51.9
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|++|++++|.++.... .+...+++|++|++++| .+++.....+........++.++++++ .+++..+..+..
T Consensus 195 ~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~ 271 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHILLLE-IFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMK 271 (353)
T ss_dssp TTCSEEEEEEEECSCSTTHHH-HHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHH
T ss_pred hccccCCeecCCCCccccchh-hhhhhcccccEEECCCC-ccccccccccccccccchhhccccccc-cccCcchhhhHH
Confidence 344555555555554433221 22223455555555555 443322222221111223555555553 345544433222
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhh-hccCCCCCccchhhh
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDW-YDRCFNSRIIPLKEV 458 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~-l~~c~~L~~l~l~~l 458 (547)
. + +.+++|+.|++++|... ..+.. +..+++|+.+.+..+
T Consensus 272 ~-l-~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 272 L-L-NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp H-H-HTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred H-H-hcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence 1 1 25677777777777443 43333 366666666654433
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.99 E-value=2.6e-09 Score=113.58 Aligned_cols=167 Identities=14% Similarity=0.166 Sum_probs=118.3
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
.++|+.|++++|.. +. +. ....+++|++|++++|.-..... ...+++|+.|++++|. ++. +. .
T Consensus 220 l~~L~~L~l~~n~l-~~--~~-~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~--~~------~ 282 (466)
T 1o6v_A 220 LTNLDELSLNGNQL-KD--IG-TLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQ-ISN--IS------P 282 (466)
T ss_dssp CTTCCEEECCSSCC-CC--CG-GGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSC-CCC--CG------G
T ss_pred cCCCCEEECCCCCc-cc--ch-hhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCc-cCc--cc------c
Confidence 34788888888853 32 11 23578889999998874332222 3678889999998885 222 11 2
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHH
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFL 415 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l 415 (547)
...+++|++|++++|.+++... ...+++|++|++++| .+++... +..+++ |++|++++|. +++..
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~---L~~L~l~~n~-l~~~~----- 347 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFN-NISDISP--VSSLTK---LQRLFFYNNK-VSDVS----- 347 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSS-CCSCCGG--GGGCTT---CCEEECCSSC-CCCCG-----
T ss_pred ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCC-cCCCchh--hccCcc---CCEeECCCCc-cCCch-----
Confidence 5678999999999998775332 356999999999999 7776433 445554 9999999984 44431
Q ss_pred HHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhh
Q 042559 416 TAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVS 459 (547)
Q Consensus 416 ~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~ 459 (547)
..+.+++|+.|++++|...+..+ +..+++|+.+.+....
T Consensus 348 ---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 348 ---SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp ---GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred ---hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 12479999999999997654443 7888999888776554
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.99 E-value=1.2e-10 Score=119.06 Aligned_cols=208 Identities=14% Similarity=0.033 Sum_probs=109.2
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|++|+|++|.. +.- .......+++|++|+++++. ++..........+++|++|++++|..++.... ..+
T Consensus 100 ~~L~~L~Ls~n~l-~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~------~~~ 170 (353)
T 2z80_A 100 GSLEHLDLSYNYL-SNL-SSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQR------KDF 170 (353)
T ss_dssp TTCCEEECCSSCC-SSC-CHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT------TTT
T ss_pred CCCCEEECCCCcC-CcC-CHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCH------HHc
Confidence 4677777776632 211 11224566777777776652 21100000124566777777776643332211 134
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|++|++++|.++......+ ..+++|++|++++| .++......+..+++ |++|++++|. ++......+..
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~---L~~L~L~~n~-l~~~~~~~l~~ 244 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSL-KSIQNVSHLILHMK-QHILLLEIFVDVTSS---VECLELRDTD-LDTFHFSELST 244 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECS-CSTTHHHHHHHHTTT---EEEEEEESCB-CTTCCCC----
T ss_pred cCCCCCCEEECCCCCcCccCHHHH-hccccCCeecCCCC-ccccchhhhhhhccc---ccEEECCCCc-ccccccccccc
Confidence 456677777777766554322223 23667777777776 554433323333444 7777777653 22211100000
Q ss_pred HhhcCCCCCccEEeeeCCCCCcc----chhhhccCCCCCccchhhhhhcCCCcEEEeecCCCC-Ccccccccccccccc
Q 042559 417 AVLTGDFKFLRHLDISNREGLAS----EGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEG-SFIDIEQMVDSEFNS 490 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~----~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~-~~~~~~~~l~~~~n~ 490 (547)
...+..++.++++++..... .++.+..+++|+.+.+..+. + ..+|... +.++.+..++...|.
T Consensus 245 ---~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-------l-~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 245 ---GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-------L-KSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-------C-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-------C-CccCHHHHhcCCCCCEEEeeCCC
Confidence 12355677777776643332 23456778888887776654 2 2566653 566777778887774
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.99 E-value=5.8e-10 Score=120.04 Aligned_cols=85 Identities=27% Similarity=0.280 Sum_probs=44.7
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHH-HHHHHHHHhhcCCCCCccEEeeeCCCCCccch
Q 042559 363 GFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEV-EVARFLTAVLTGDFKFLRHLDISNREGLASEG 441 (547)
Q Consensus 363 ~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~-~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~ 441 (547)
.+++|++|++++| .+++..+..+..+ ++|++|++++|. ++.. .+... .+.+++|++|++++|...+..+
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l---~~L~~L~L~~N~-l~~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVFENCGHL---TELETLILQMNQ-LKELSKIAEM-----TTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTTCCCC---SSCCEEECCSSC-CCBHHHHHHH-----HTTCTTCCEEECCSSCCBCCGG
T ss_pred hCCcccEEEeECC-ccChhhhhhhccC---CCCCEEEccCCc-cCccccchHH-----HhhCCCCCEEECCCCcCCcccc
Confidence 4566666777666 5555433333333 347777777654 3321 11111 1356777777777776554322
Q ss_pred h-hhccCCCCCccchhh
Q 042559 442 D-WYDRCFNSRIIPLKE 457 (547)
Q Consensus 442 ~-~l~~c~~L~~l~l~~ 457 (547)
. .+..+++|+.+.+..
T Consensus 392 ~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp GCSCCCCTTCCEEECCS
T ss_pred cchhccCccCCEEECcC
Confidence 2 245556666555443
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.98 E-value=2.1e-10 Score=115.34 Aligned_cols=201 Identities=16% Similarity=0.069 Sum_probs=99.5
Q ss_pred CccEEEEeCCCCCCHHHHHHH-HhcCCCccEEEEecCCCCCH--HHHHHHHhc-CCCccEEEecCCCCCCCCcCCCcchH
Q 042559 258 LLRRLHLYNIERMDNASLSMA-LSACPSLLDLEIVGLHVELR--QTLMSVSMS-CPLLERLFFESSKTGRDDSLKSPTCV 333 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l-~~~~~~L~~L~Ls~c~~i~~--~~l~~l~~~-~~~L~~L~L~~c~~l~~~~l~~~~l~ 333 (547)
+|++|+|++|.. +...-..+ ...+++|++|+++++. ++. ..+..+... +++|++|++++|. ++....
T Consensus 96 ~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~------ 166 (312)
T 1wwl_A 96 GLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSC------ 166 (312)
T ss_dssp CCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCT------
T ss_pred CccEEEccCCcc-cchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchH------
Confidence 577777777632 21100111 1456777777777753 222 122222111 2667777777765 222211
Q ss_pred HHhcCCCCcceEEeeccCCCHH-HH-HHH-HhcCCCCcEEeccCCCCCCH--HHHHHH-HcCCCCCCccEEeeeCCCCCC
Q 042559 334 DFVNNCPNLTSMALRGFKLPDY-KI-RIL-LKGFRKLKYVDFSTSYSITG--AFLRNL-GSGTGGNLLEVLILRDCMHLK 407 (547)
Q Consensus 334 ~~~~~~~~L~~L~L~~~~ltd~-~l-~~l-~~~~~~L~~L~Ls~c~~lt~--~~l~~L-~~~~~l~~L~~L~Ls~C~~L~ 407 (547)
..+..+++|++|++++|.+... ++ ..+ ...+++|++|++++| .++. .....+ ..+++ |++|+|+++. ++
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~---L~~L~Ls~N~-l~ 241 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQ---LQGLDLSHNS-LR 241 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCC---CSEEECTTSC-CC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCC---CCEEECCCCc-CC
Confidence 1344567777777777765543 11 222 145677777777777 6662 222222 23343 7777777653 33
Q ss_pred HHH-HHHHHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccc
Q 042559 408 EVE-VARFLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDS 486 (547)
Q Consensus 408 ~~~-l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~ 486 (547)
... . .....+++|++|++++|... ..+..+. ++|+.+.+..+. + ..+|. ...++.+..++.
T Consensus 242 ~~~~~------~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~-------l-~~~p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 242 DAAGA------PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR-------L-DRNPS-PDELPQVGNLSL 303 (312)
T ss_dssp SSCCC------SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC-------C-CSCCC-TTTSCEEEEEEC
T ss_pred cccch------hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC-------C-CCChh-HhhCCCCCEEec
Confidence 211 0 00123567777777777533 4333333 455555554443 1 11233 444555556666
Q ss_pred cccc
Q 042559 487 EFNS 490 (547)
Q Consensus 487 ~~n~ 490 (547)
..|.
T Consensus 304 ~~N~ 307 (312)
T 1wwl_A 304 KGNP 307 (312)
T ss_dssp TTCT
T ss_pred cCCC
Confidence 6653
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.97 E-value=3.7e-10 Score=114.33 Aligned_cols=140 Identities=19% Similarity=0.156 Sum_probs=72.7
Q ss_pred hcCCCCcceEEeeccCCCHHHHH-HHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHH
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIR-ILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARF 414 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~-~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~ 414 (547)
...+++|++|++++|.++..++. ....++++|++|++++| .++. +... -.++|++|++++|. ++....
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~-----l~~~-~~~~L~~L~l~~n~-l~~~~~--- 209 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITT-----IPQG-LPPSLTELHLDGNK-ITKVDA--- 209 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCS-----CCSS-CCTTCSEEECTTSC-CCEECT---
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-cccc-----CCcc-ccccCCEEECCCCc-CCccCH---
Confidence 44455555555555544332111 11223555555555555 3332 1110 01246666666643 332211
Q ss_pred HHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCcc
Q 042559 415 LTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEISL 494 (547)
Q Consensus 415 l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~~ 494 (547)
...+.+++|++|++++|...+.....+..+++|+.+.+..+. + ..+|.....+..+..++...|....+
T Consensus 210 ---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l-~~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 210 ---ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-------L-VKVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp ---GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-------C-SSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred ---HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-------C-ccCChhhccCCCcCEEECCCCcCCcc
Confidence 011356777777777775444344566777777777666553 1 25666666677777788877754444
Q ss_pred ccc
Q 042559 495 PSQ 497 (547)
Q Consensus 495 ~~~ 497 (547)
|..
T Consensus 279 ~~~ 281 (330)
T 1xku_A 279 GSN 281 (330)
T ss_dssp CTT
T ss_pred Chh
Confidence 443
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.97 E-value=1.3e-11 Score=135.55 Aligned_cols=167 Identities=14% Similarity=0.064 Sum_probs=81.1
Q ss_pred hcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHH
Q 042559 306 MSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRN 385 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~ 385 (547)
..+++|++|++++|. ++. +. ..+..+++|++|++++|.++..........+++|++|++++| .+++.....
T Consensus 373 ~~~~~L~~L~L~~n~-l~~--~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 443 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNG-AII--MS-----ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGI 443 (606)
T ss_dssp HCCSCCCEEECCSCS-EEE--EC-----CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS-CCEECCTTT
T ss_pred ccCCcccEeECCCCc-ccc--ch-----hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC-CCCccchhh
Confidence 445555555555553 111 11 123345566666666654433222112234566666666666 444332222
Q ss_pred HHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCc
Q 042559 386 LGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDI 465 (547)
Q Consensus 386 L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l 465 (547)
+..++ +|++|++++|. +++..+ ....+.+++|++|++++|...+..++.+..+++|+.+.+..+.
T Consensus 444 ~~~l~---~L~~L~l~~n~-l~~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~------ 508 (606)
T 3vq2_A 444 FLGLT---SLNTLKMAGNS-FKDNTL-----SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN------ 508 (606)
T ss_dssp TTTCT---TCCEEECTTCE-EGGGEE-----CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------
T ss_pred hcCCC---CCCEEECCCCc-CCCcch-----HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc------
Confidence 33333 36666666653 211000 0011356667777776665444445556666666666655544
Q ss_pred EEEeecCCCCCcccccccccccccccCccccc
Q 042559 466 CVLAEFPSEGSFIDIEQMVDSEFNSEISLPSQ 497 (547)
Q Consensus 466 ~~~~~~p~~~~~~~~~~~l~~~~n~~~~~~~~ 497 (547)
+.+..|...+.+..+..++...|..-.+|..
T Consensus 509 -l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 509 -LLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp -CSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred -CCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 3333344455555666666666654344443
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.97 E-value=1.2e-10 Score=120.72 Aligned_cols=252 Identities=12% Similarity=0.056 Sum_probs=141.4
Q ss_pred CCccEEEecccCCCCCCCccchhHH-HHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeC
Q 042559 188 KSLQSLKLGIVPGPTASPWSCQSLV-YTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYN 266 (547)
Q Consensus 188 ~~L~~L~L~~~~~~~~~~~~c~~l~-~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~ 266 (547)
..++.|+++.+. -..++ ..+..+++++.|.+.+.. ..+..... -...++|++|+|++
T Consensus 45 ~~l~~l~l~~~~--------l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~-------------~~~l~~L~~L~L~~ 102 (390)
T 3o6n_A 45 NNQKIVTFKNST--------MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA-------------FAYAHTIQKLYMGF 102 (390)
T ss_dssp CCCSEEEEESCE--------ESEECTHHHHHCCCCSEEECTTSC-CCEECTTT-------------TTTCTTCCEEECCS
T ss_pred CCceEEEecCCc--------hhhCChhHhcccccCcEEECCCCc-ccccChhh-------------ccCCCCcCEEECCC
Confidence 568888886431 11122 235668888888775543 12211101 12345799999998
Q ss_pred CCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEE
Q 042559 267 IERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMA 346 (547)
Q Consensus 267 c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~ 346 (547)
|.. +.. .......+++|++|+++++. ++... ..+...+++|++|++++|. ++.... ..+..+++|++|+
T Consensus 103 n~l-~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~L~~n~-l~~~~~------~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 103 NAI-RYL-PPHVFQNVPLLTVLVLERND-LSSLP-RGIFHNTPKLTTLSMSNNN-LERIED------DTFQATTSLQNLQ 171 (390)
T ss_dssp SCC-CCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCBCCT------TTTSSCTTCCEEE
T ss_pred CCC-CcC-CHHHhcCCCCCCEEECCCCc-cCcCC-HHHhcCCCCCcEEECCCCc-cCccCh------hhccCCCCCCEEE
Confidence 853 321 12234678999999999873 32111 1112568899999999886 332211 2456789999999
Q ss_pred eeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHH----H----------HHHcCCCCCCccEEeeeCCCCCCHHHHH
Q 042559 347 LRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFL----R----------NLGSGTGGNLLEVLILRDCMHLKEVEVA 412 (547)
Q Consensus 347 L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l----~----------~L~~~~~l~~L~~L~Ls~C~~L~~~~l~ 412 (547)
+++|.++...+ ..+++|++|+++++ .++.... + .+. ...+.+|++|++++|. +++...
T Consensus 172 l~~n~l~~~~~----~~l~~L~~L~l~~n-~l~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~-l~~~~~- 243 (390)
T 3o6n_A 172 LSSNRLTHVDL----SLIPSLFHANVSYN-LLSTLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNN-LTDTAW- 243 (390)
T ss_dssp CCSSCCSBCCG----GGCTTCSEEECCSS-CCSEEECCSSCSEEECCSSCCCEEE-CCCCSSCCEEECCSSC-CCCCGG-
T ss_pred CCCCcCCcccc----ccccccceeecccc-cccccCCCCcceEEECCCCeeeecc-ccccccccEEECCCCC-CcccHH-
Confidence 99987775432 23566666666665 3332100 0 000 0112246667776653 332211
Q ss_pred HHHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccC
Q 042559 413 RFLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEI 492 (547)
Q Consensus 413 ~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~ 492 (547)
.+.+++|++|++++|......+..+..+++|+.+.+.... + ..+|.....++.+..++...|...
T Consensus 244 -------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l---~~~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 244 -------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-----L---VALNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp -------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-----C---CEEECSSSCCTTCCEEECCSSCCC
T ss_pred -------HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-----C---cccCcccCCCCCCCEEECCCCcce
Confidence 1357788888888886544456677777888777665543 1 123333344455555666666433
Q ss_pred ccc
Q 042559 493 SLP 495 (547)
Q Consensus 493 ~~~ 495 (547)
.+|
T Consensus 309 ~~~ 311 (390)
T 3o6n_A 309 HVE 311 (390)
T ss_dssp CCG
T ss_pred ecC
Confidence 343
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.97 E-value=5.7e-11 Score=119.55 Aligned_cols=192 Identities=16% Similarity=0.118 Sum_probs=121.6
Q ss_pred cCCCccEEEEecCCCCCHHHHHHH-HhcCCCccEEEecCCCCCCCCcCCCcchHHHh-cCCCCcceEEeeccCCCHHHHH
Q 042559 281 ACPSLLDLEIVGLHVELRQTLMSV-SMSCPLLERLFFESSKTGRDDSLKSPTCVDFV-NNCPNLTSMALRGFKLPDYKIR 358 (547)
Q Consensus 281 ~~~~L~~L~Ls~c~~i~~~~l~~l-~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~-~~~~~L~~L~L~~~~ltd~~l~ 358 (547)
.+++|++|+|+++. ++......+ ...+++|++|++++|. ++.. .. .+..+. ..+++|++|++++|.++.....
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~--~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVS-WATR--DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCB-CSSS--SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCC-Ccch--hH-HHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 68999999999974 322111111 2568899999999986 3333 11 111111 1138999999999987654433
Q ss_pred HHHhcCCCCcEEeccCCCCCCHHH--HHHHHcCCCCCCccEEeeeCCCCCCHH-HHHHHHHHhhcCCCCCccEEeeeCCC
Q 042559 359 ILLKGFRKLKYVDFSTSYSITGAF--LRNLGSGTGGNLLEVLILRDCMHLKEV-EVARFLTAVLTGDFKFLRHLDISNRE 435 (547)
Q Consensus 359 ~l~~~~~~L~~L~Ls~c~~lt~~~--l~~L~~~~~l~~L~~L~Ls~C~~L~~~-~l~~~l~~~l~~~~~~L~~L~Ls~c~ 435 (547)
.+. .+++|++|++++| .+++.. +..+. ...+++|++|+|++|. ++.. .+...+. ..+++|++|++++|.
T Consensus 168 ~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~~----~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 168 QVR-VFPALSTLDLSDN-PELGERGLISALC-PLKFPTLQVLALRNAG-METPSGVCSALA----AARVQLQGLDLSHNS 239 (312)
T ss_dssp TCC-CCSSCCEEECCSC-TTCHHHHHHHHSC-TTSCTTCCEEECTTSC-CCCHHHHHHHHH----HTTCCCSEEECTTSC
T ss_pred Hhc-cCCCCCEEECCCC-CcCcchHHHHHHH-hccCCCCCEEECCCCc-CcchHHHHHHHH----hcCCCCCEEECCCCc
Confidence 333 5899999999999 666542 22331 1344569999999974 5522 2211111 267899999999997
Q ss_pred CCccc-hhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCccc
Q 042559 436 GLASE-GDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEISLP 495 (547)
Q Consensus 436 ~l~~~-~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~~~ 495 (547)
..+.. ...+..+++|+.+.+..+. + ..+|.... ..+..++...|..-.+|
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N~-------l-~~ip~~~~--~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFTG-------L-KQVPKGLP--AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTSC-------C-SSCCSSCC--SEEEEEECCSSCCCSCC
T ss_pred CCcccchhhhhhcCCCCEEECCCCc-------c-Chhhhhcc--CCceEEECCCCCCCCCh
Confidence 65543 2344567888888877665 2 14565544 66777888888633333
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.97 E-value=1.6e-11 Score=123.75 Aligned_cols=201 Identities=17% Similarity=0.165 Sum_probs=132.7
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCC--CHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVE--LRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i--~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
++|++|+|+++..++.. +...+..+++|++|+++++.-. ....+ ..+++|++|++++|. ++. .+. .
T Consensus 76 ~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~l~~L~~L~Ls~N~-l~~-~~p-----~ 143 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFL----SQIKTLVTLDFSYNA-LSG-TLP-----P 143 (313)
T ss_dssp TTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGG----GGCTTCCEEECCSSE-EES-CCC-----G
T ss_pred CCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHH----hCCCCCCEEeCCCCc-cCC-cCC-----h
Confidence 36899999852233211 2233467888999999887421 12223 678889999998875 221 112 2
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCC-CCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHH
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFR-KLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVAR 413 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~-~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~ 413 (547)
.+..+++|++|++++|.+++.....+.. ++ +|++|++++| .+++.....+..+. |++|+|++|. ++....
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N-~l~~~~~~~~~~l~----L~~L~Ls~N~-l~~~~~-- 214 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRN-RLTGKIPPTFANLN----LAFVDLSRNM-LEGDAS-- 214 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSS-EEEEECCGGGGGCC----CSEEECCSSE-EEECCG--
T ss_pred HHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECcCC-eeeccCChHHhCCc----ccEEECcCCc-ccCcCC--
Confidence 5567888999999988776443334443 55 8999999888 66654444444442 8999998864 221100
Q ss_pred HHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 414 FLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 414 ~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
...+.+++|+.|++++|...... ..+..+++|+.+.+..+. +.+.+|...+.+..+..++...|.
T Consensus 215 ----~~~~~l~~L~~L~L~~N~l~~~~-~~~~~l~~L~~L~Ls~N~-------l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 215 ----VLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNR-------IYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp ----GGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSC-------CEECCCGGGGGCTTCCEEECCSSE
T ss_pred ----HHHhcCCCCCEEECCCCceeeec-CcccccCCCCEEECcCCc-------ccCcCChHHhcCcCCCEEECcCCc
Confidence 11246889999999998765443 336778888888887766 667788878888888889998885
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.97 E-value=1.2e-10 Score=123.09 Aligned_cols=176 Identities=16% Similarity=0.106 Sum_probs=90.6
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCC--CCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHV--ELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~--i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
++|++|+|++|. ++.- ....+..+++|++|+|+++.- +....+ ..+++|++|++++|..+......
T Consensus 112 ~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~----~~l~~L~~L~l~~~~~l~~i~~~------ 179 (440)
T 3zyj_A 112 ANLNTLELFDNR-LTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAF----NRIPSLRRLDLGELKRLSYISEG------ 179 (440)
T ss_dssp SSCCEEECCSSC-CSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTT----TTCTTCCEEECCCCTTCCEECTT------
T ss_pred ccCCEEECCCCc-CCee-CHhHhhccccCceeeCCCCcccccCHHHh----hhCcccCEeCCCCCCCcceeCcc------
Confidence 357777776663 2210 011234566677777766521 111112 45666777777665544332211
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHH
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARF 414 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~ 414 (547)
.+..+++|++|++++|.++.-. . ...+++|++|+|++| .+++.....+..++ +|++|+|+++. ++....
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~---~L~~L~L~~n~-l~~~~~--- 248 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIP--N-LTPLIKLDELDLSGN-HLSAIRPGSFQGLM---HLQKLWMIQSQ-IQVIER--- 248 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCC--C-CTTCSSCCEEECTTS-CCCEECTTTTTTCT---TCCEEECTTCC-CCEECT---
T ss_pred hhhcccccCeecCCCCcCcccc--c-cCCCcccCEEECCCC-ccCccChhhhccCc---cCCEEECCCCc-eeEECh---
Confidence 3445667777777776554221 1 234667777777776 55543333333333 37777777643 332211
Q ss_pred HHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhh
Q 042559 415 LTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEV 458 (547)
Q Consensus 415 l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l 458 (547)
.....+++|+.|+|++|...+-..+.+..+++|+.+.+..+
T Consensus 249 ---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 249 ---NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp ---TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred ---hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 01135667777777777544334445566666666655443
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.96 E-value=1.8e-10 Score=126.57 Aligned_cols=255 Identities=13% Similarity=0.067 Sum_probs=143.4
Q ss_pred CCccEEEecccCCCCCCCccchhHH-HHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeC
Q 042559 188 KSLQSLKLGIVPGPTASPWSCQSLV-YTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYN 266 (547)
Q Consensus 188 ~~L~~L~L~~~~~~~~~~~~c~~l~-~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~ 266 (547)
..++.|.++.+. ...++ ..+.+++++..|.+.+.. ..+.....+ ...++|++|+|++
T Consensus 51 ~~l~~l~l~~~~--------l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-------------~~l~~L~~L~L~~ 108 (597)
T 3oja_B 51 NNQKIVTFKNST--------MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAF-------------AYAHTIQKLYMGF 108 (597)
T ss_dssp CCCSEEEESSCE--------ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTT-------------TTCTTCCEEECCS
T ss_pred CCceEEEeeCCC--------CCCcCHHHHccCCCCcEEECCCCC-CCCCChHHh-------------cCCCCCCEEECCC
Confidence 456777776331 11121 235667888888775543 222111011 1345799999998
Q ss_pred CCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEE
Q 042559 267 IERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMA 346 (547)
Q Consensus 267 c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~ 346 (547)
|.. +.. ....+..+++|++|+|++|. ++... ..+..++++|++|++++|. ++.... ..+..+++|++|+
T Consensus 109 n~l-~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~Ls~N~-l~~~~~------~~~~~l~~L~~L~ 177 (597)
T 3oja_B 109 NAI-RYL-PPHVFQNVPLLTVLVLERND-LSSLP-RGIFHNTPKLTTLSMSNNN-LERIED------DTFQATTSLQNLQ 177 (597)
T ss_dssp SCC-CCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCBCCT------TTTTTCTTCCEEE
T ss_pred CcC-CCC-CHHHHcCCCCCCEEEeeCCC-CCCCC-HHHhccCCCCCEEEeeCCc-CCCCCh------hhhhcCCcCcEEE
Confidence 853 321 12334678999999999873 32111 1112678899999999885 332221 2456788999999
Q ss_pred eeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHH-HHHH------------cCCCCCCccEEeeeCCCCCCHHHHHH
Q 042559 347 LRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFL-RNLG------------SGTGGNLLEVLILRDCMHLKEVEVAR 413 (547)
Q Consensus 347 L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l-~~L~------------~~~~l~~L~~L~Ls~C~~L~~~~l~~ 413 (547)
+++|.++... ...+++|++|++++| .+++... ..+. ......+|+.|+|++|. +++..
T Consensus 178 L~~N~l~~~~----~~~l~~L~~L~l~~n-~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~~--- 248 (597)
T 3oja_B 178 LSSNRLTHVD----LSLIPSLFHANVSYN-LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTA--- 248 (597)
T ss_dssp CTTSCCSBCC----GGGCTTCSEEECCSS-CCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCCG---
T ss_pred CcCCCCCCcC----hhhhhhhhhhhcccC-ccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCCCh---
Confidence 9998776543 234667777777666 4432100 0000 00011246666666653 33211
Q ss_pred HHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCc
Q 042559 414 FLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEIS 493 (547)
Q Consensus 414 ~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~ 493 (547)
..+.+++|+.|+|++|...+..+..+..+++|+.+.+..+. + ..+|...+.++.+..+++..|....
T Consensus 249 -----~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------l-~~l~~~~~~l~~L~~L~Ls~N~l~~ 315 (597)
T 3oja_B 249 -----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-------L-VALNLYGQPIPTLKVLDLSHNHLLH 315 (597)
T ss_dssp -----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-------C-CEEECSSSCCTTCCEEECCSSCCCC
T ss_pred -----hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-------C-CCCCcccccCCCCcEEECCCCCCCc
Confidence 11367888888888887655566777888888887776543 1 1234444445556666666665434
Q ss_pred cccc
Q 042559 494 LPSQ 497 (547)
Q Consensus 494 ~~~~ 497 (547)
+|..
T Consensus 316 i~~~ 319 (597)
T 3oja_B 316 VERN 319 (597)
T ss_dssp CGGG
T ss_pred cCcc
Confidence 4443
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.96 E-value=2.5e-11 Score=121.58 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=15.0
Q ss_pred CCCCccEEeeeCCCCCccchhhhccCCCCCccchh
Q 042559 422 DFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLK 456 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~ 456 (547)
.+++|++|++++|...+..+..+..+++|+.+.+.
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 34445555555443322223344444444444443
No 55
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.95 E-value=1.7e-10 Score=113.58 Aligned_cols=179 Identities=17% Similarity=0.140 Sum_probs=100.8
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|++|+|+++.. +.-. ...+..+++|++|+|+++. ++... ..+...+++|++|++++|. ++.... ...
T Consensus 37 ~~l~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~-~~~~~~l~~L~~L~l~~n~-l~~~~~------~~~ 105 (270)
T 2o6q_A 37 ADTKKLDLQSNKL-SSLP-SKAFHRLTKLRLLYLNDNK-LQTLP-AGIFKELKNLETLWVTDNK-LQALPI------GVF 105 (270)
T ss_dssp TTCSEEECCSSCC-SCCC-TTSSSSCTTCCEEECCSSC-CSCCC-TTTTSSCTTCCEEECCSSC-CCCCCT------TTT
T ss_pred CCCCEEECcCCCC-CeeC-HHHhcCCCCCCEEECCCCc-cCeeC-hhhhcCCCCCCEEECCCCc-CCcCCH------hHc
Confidence 4688888887743 2110 1123467788888887763 22110 0112557788888888775 332221 244
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|++|++++|.++...... ...+++|++|+|++| .++......+..+ ++|++|+|++|. ++....
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l---~~L~~L~L~~n~-l~~~~~----- 174 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYN-ELQSLPKGVFDKL---TSLKELRLYNNQ-LKRVPE----- 174 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTC---TTCCEEECCSSC-CSCCCT-----
T ss_pred ccccCCCEEECCCCccCeeCHHH-hCcCcCCCEEECCCC-cCCccCHhHccCC---cccceeEecCCc-CcEeCh-----
Confidence 56778888888887665433222 235778888888887 5654322223333 348888888753 322111
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhh
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEV 458 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l 458 (547)
...+.+++|++|+|++|...+-....+..+++|+.+.+..+
T Consensus 175 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 175 -GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp -TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 01135677888888887543333344566677766655443
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.95 E-value=3.3e-09 Score=114.77 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=69.2
Q ss_pred CCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHH-HHHHHHh
Q 042559 340 PNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEV-ARFLTAV 418 (547)
Q Consensus 340 ~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l-~~~l~~~ 418 (547)
++|+.|++.+|.++.- ...+...+++|++|++++| .+++..+........+++|++|+|++|. ++.... ...
T Consensus 310 ~~L~~L~l~~n~l~~i-p~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---- 382 (549)
T 2z81_A 310 EKVKRITVENSKVFLV-PCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEI---- 382 (549)
T ss_dssp TTCCEEEEESSCCCCC-CHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHH----
T ss_pred ccceEEEeccCccccC-CHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCc-ccccccchhh----
Confidence 3455555555544321 1223346889999999998 8888766553333344459999999864 443321 111
Q ss_pred hcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhh
Q 042559 419 LTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVS 459 (547)
Q Consensus 419 l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~ 459 (547)
.+.+++|++|++++|. ++..+..+..+++|+.+.+..+.
T Consensus 383 -~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 383 -LLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp -GGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC
T ss_pred -hhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC
Confidence 1368889999999884 44555666677777777665543
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.95 E-value=6.5e-10 Score=111.66 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=110.9
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|++|+|++|.. ++ +.. ...+++|++|+++++.-..... ...+++|++|++++|. +++ +. .+
T Consensus 63 ~~L~~L~L~~n~i-~~--~~~-~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~--~~------~l 125 (308)
T 1h6u_A 63 NNLIGLELKDNQI-TD--LAP-LKNLTKITELELSGNPLKNVSA----IAGLQSIKTLDLTSTQ-ITD--VT------PL 125 (308)
T ss_dssp TTCCEEECCSSCC-CC--CGG-GTTCCSCCEEECCSCCCSCCGG----GTTCTTCCEEECTTSC-CCC--CG------GG
T ss_pred CCCCEEEccCCcC-CC--Chh-HccCCCCCEEEccCCcCCCchh----hcCCCCCCEEECCCCC-CCC--ch------hh
Confidence 4789999988843 32 222 5678889999998874322222 2667889999998886 332 21 25
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|++|++++|.+++... ...+++|++|++++| .+++... +..++ +|++|++++|. +++...
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~--l~~l~---~L~~L~l~~n~-l~~~~~----- 190 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNA-QVSDLTP--LANLS---KLTTLKADDNK-ISDISP----- 190 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGG--GTTCT---TCCEEECCSSC-CCCCGG-----
T ss_pred cCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCC-cCCCChh--hcCCC---CCCEEECCCCc-cCcChh-----
Confidence 678889999999887765332 346888999999888 6765322 44444 49999998864 443221
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhh
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVS 459 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~ 459 (547)
...+++|++|++++|...... .+..+++|+.+.+....
T Consensus 191 ---l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 191 ---LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp ---GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEE
T ss_pred ---hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCe
Confidence 135788999999888654332 36778888877766554
No 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.95 E-value=6.9e-10 Score=111.49 Aligned_cols=189 Identities=14% Similarity=0.154 Sum_probs=121.9
Q ss_pred CCccEEEecccCCCCCCCccchhHHHHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeCC
Q 042559 188 KSLQSLKLGIVPGPTASPWSCQSLVYTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYNI 267 (547)
Q Consensus 188 ~~L~~L~L~~~~~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c 267 (547)
+.|++|++.++.- ...+ .+..+.+++.|.+.+..- .+... ... .++|++|+|++|
T Consensus 41 ~~L~~L~l~~~~i-~~l~--------~~~~l~~L~~L~L~~n~i-~~~~~---~~~------------l~~L~~L~L~~n 95 (308)
T 1h6u_A 41 DGITTLSAFGTGV-TTIE--------GVQYLNNLIGLELKDNQI-TDLAP---LKN------------LTKITELELSGN 95 (308)
T ss_dssp HTCCEEECTTSCC-CCCT--------TGGGCTTCCEEECCSSCC-CCCGG---GTT------------CCSCCEEECCSC
T ss_pred CCcCEEEeeCCCc-cCch--------hhhccCCCCEEEccCCcC-CCChh---Hcc------------CCCCCEEEccCC
Confidence 4688888875532 1111 245678888887755421 22111 222 347999999988
Q ss_pred CCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEe
Q 042559 268 ERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMAL 347 (547)
Q Consensus 268 ~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L 347 (547)
. ++. +. ....+++|++|++++|.-..... ...+++|++|++++|. ++. +. .+..+++|++|++
T Consensus 96 ~-l~~--~~-~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~--~~------~l~~l~~L~~L~l 158 (308)
T 1h6u_A 96 P-LKN--VS-AIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQ-ITN--IS------PLAGLTNLQYLSI 158 (308)
T ss_dssp C-CSC--CG-GGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSC-CCC--CG------GGGGCTTCCEEEC
T ss_pred c-CCC--ch-hhcCCCCCCEEECCCCCCCCchh----hcCCCCCCEEECCCCc-cCc--Cc------cccCCCCccEEEc
Confidence 5 332 22 24568899999999874322222 3678899999999885 322 11 2557889999999
Q ss_pred eccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCcc
Q 042559 348 RGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLR 427 (547)
Q Consensus 348 ~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~ 427 (547)
++|.+++... ...+++|++|++++| .+++.. .+..+++ |++|+|++|. +++..- ...+++|+
T Consensus 159 ~~n~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~---L~~L~L~~N~-l~~~~~--------l~~l~~L~ 220 (308)
T 1h6u_A 159 GNAQVSDLTP---LANLSKLTTLKADDN-KISDIS--PLASLPN---LIEVHLKNNQ-ISDVSP--------LANTSNLF 220 (308)
T ss_dssp CSSCCCCCGG---GTTCTTCCEEECCSS-CCCCCG--GGGGCTT---CCEEECTTSC-CCBCGG--------GTTCTTCC
T ss_pred cCCcCCCChh---hcCCCCCCEEECCCC-ccCcCh--hhcCCCC---CCEEEccCCc-cCcccc--------ccCCCCCC
Confidence 9987775332 456889999999988 676532 2444554 9999999864 443221 13688999
Q ss_pred EEeeeCCCC
Q 042559 428 HLDISNREG 436 (547)
Q Consensus 428 ~L~Ls~c~~ 436 (547)
.|++++|+.
T Consensus 221 ~L~l~~N~i 229 (308)
T 1h6u_A 221 IVTLTNQTI 229 (308)
T ss_dssp EEEEEEEEE
T ss_pred EEEccCCee
Confidence 999998864
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=1.6e-10 Score=131.59 Aligned_cols=150 Identities=12% Similarity=0.030 Sum_probs=93.5
Q ss_pred CCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHc-----CCCCCCccEEeeeCCCCCCHHHHHH
Q 042559 339 CPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGS-----GTGGNLLEVLILRDCMHLKEVEVAR 413 (547)
Q Consensus 339 ~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~-----~~~l~~L~~L~Ls~C~~L~~~~l~~ 413 (547)
+++|+.|++++|.++. ....+...+++|++|+|++| .++ .....+.. +.++++|++|+|++| +++....
T Consensus 672 ~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N-~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~-- 745 (876)
T 4ecn_A 672 GINASTVTLSYNEIQK-FPTELFATGSPISTIILSNN-LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSD-- 745 (876)
T ss_dssp CCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSC-CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCG--
T ss_pred CCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCC-cCC-ccChHHhccccccccccCCccEEECCCC-CCccchH--
Confidence 3477888888876662 22334556788888888887 666 11111111 222336888888886 4442111
Q ss_pred HHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCc
Q 042559 414 FLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEIS 493 (547)
Q Consensus 414 ~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~ 493 (547)
......+++|+.|+|++|...+ .+..+..+++|+.+.+..+. ......+.+.+|...+.+..+..+++..|..-.
T Consensus 746 ---~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~ 820 (876)
T 4ecn_A 746 ---DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820 (876)
T ss_dssp ---GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred ---HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-CcccccccccChHHHhcCCCCCEEECCCCCCCc
Confidence 0001267889999999886544 56677788888888775532 111122556778777788888888888887556
Q ss_pred cccccc
Q 042559 494 LPSQLS 499 (547)
Q Consensus 494 ~~~~~~ 499 (547)
+|..+.
T Consensus 821 Ip~~l~ 826 (876)
T 4ecn_A 821 VDEKLT 826 (876)
T ss_dssp CCSCCC
T ss_pred cCHhhc
Confidence 666543
No 60
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.93 E-value=2.2e-10 Score=112.84 Aligned_cols=178 Identities=15% Similarity=0.069 Sum_probs=120.1
Q ss_pred cCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHH
Q 042559 281 ACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRIL 360 (547)
Q Consensus 281 ~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l 360 (547)
.+++|++|++.++......++ ..+++|++|++++|. +++ +. .+..+++|++|++++|.++..... .
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l----~~l~~L~~L~l~~n~-l~~--~~------~l~~l~~L~~L~L~~n~l~~~~~~-~ 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGI----QYLPNVRYLALGGNK-LHD--IS------ALKELTNLTYLILTGNQLQSLPNG-V 104 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTG----GGCTTCCEEECTTSC-CCC--CG------GGTTCTTCCEEECTTSCCCCCCTT-T
T ss_pred cccceeeeeeCCCCccccccc----ccCCCCcEEECCCCC-CCC--ch------hhcCCCCCCEEECCCCccCccChh-H
Confidence 457788888887743333333 679999999999986 332 22 456799999999999987743322 2
Q ss_pred HhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccc
Q 042559 361 LKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASE 440 (547)
Q Consensus 361 ~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~ 440 (547)
...+++|++|++++| .+++.....+..+ ++|++|++++| .++.... ...+.+++|++|++++|...+-.
T Consensus 105 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l---~~L~~L~L~~n-~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 105 FDKLTNLKELVLVEN-QLQSLPDGVFDKL---TNLTYLNLAHN-QLQSLPK------GVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TTTCTTCCEEECTTS-CCCCCCTTTTTTC---TTCCEEECCSS-CCCCCCT------TTTTTCTTCCEEECCSSCCCCCC
T ss_pred hcCCcCCCEEECCCC-cCCccCHHHhccC---CCCCEEECCCC-ccCccCH------HHhccCccCCEEECCCCCcCccC
Confidence 346899999999999 7764332223334 45999999997 4442211 01246899999999999655445
Q ss_pred hhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 441 GDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 441 ~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
...+..+++|+.+.+..+. +.+..|...+.+..+..++...|.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQ-------LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTTTTTCTTCCEEECCSSC-------CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHHhcCCccCCEEECCCCc-------CCccCHHHHhCCcCCCEEEccCCC
Confidence 5567889999988876654 222222234556666667776663
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.90 E-value=3e-09 Score=118.40 Aligned_cols=128 Identities=20% Similarity=0.166 Sum_probs=69.9
Q ss_pred CccEEEEeCCCCCCHHHHHH-HHhcCCCccEEEEecCCC--CCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 258 LLRRLHLYNIERMDNASLSM-ALSACPSLLDLEIVGLHV--ELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~-l~~~~~~L~~L~Ls~c~~--i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
+|++|+|++|. ++. +.. .+..+++|++|+++++.- +....+ .++++|++|++++|. ++.....
T Consensus 74 ~L~~L~L~~n~-l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~-l~~~~~~------ 139 (680)
T 1ziw_A 74 MLKVLNLQHNE-LSQ--LSDKTFAFCTNLTELHLMSNSIQKIKNNPF----VKQKNLITLDLSHNG-LSSTKLG------ 139 (680)
T ss_dssp TCCEEECCSSC-CCC--CCTTTTTTCTTCSEEECCSSCCCCCCSCTT----TTCTTCCEEECCSSC-CSCCCCC------
T ss_pred CcCEEECCCCc-cCc--cChhhhccCCCCCEEECCCCccCccChhHc----cccCCCCEEECCCCc-ccccCch------
Confidence 57888887773 221 111 234677788888877631 111123 567778888887774 2222111
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHH-hcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCC
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILL-KGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDC 403 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~-~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C 403 (547)
...++++|++|++++|.++......+. ..+++|++|++++| .+++.....+..+++ |+.|++.++
T Consensus 140 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~---L~~L~l~~~ 205 (680)
T 1ziw_A 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGR---LFGLFLNNV 205 (680)
T ss_dssp SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSE---ECEEECTTC
T ss_pred hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhh---hhhhhcccc
Confidence 334677777777777766543333332 13567777777776 555433333333332 555555543
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.89 E-value=2.8e-10 Score=114.79 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=7.8
Q ss_pred cCCccEEEeccc
Q 042559 187 GKSLQSLKLGIV 198 (547)
Q Consensus 187 ~~~L~~L~L~~~ 198 (547)
.+.|++|+|+++
T Consensus 33 ~~~L~~L~L~~n 44 (317)
T 3o53_A 33 AWNVKELDLSGN 44 (317)
T ss_dssp GGGCSEEECTTS
T ss_pred CCCCCEEECcCC
Confidence 446777777644
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.88 E-value=3e-10 Score=120.28 Aligned_cols=178 Identities=15% Similarity=0.026 Sum_probs=98.6
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|++|+|++|. ++.- ....+..+++|++|+|+++. ++... ......+++|++|++++|..++..... ..
T Consensus 123 ~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~------~~ 192 (452)
T 3zyi_A 123 ASLNTLELFDNW-LTVI-PSGAFEYLSKLRELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISEG------AF 192 (452)
T ss_dssp TTCCEEECCSSC-CSBC-CTTTSSSCTTCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTT------TT
T ss_pred ccCCEEECCCCc-CCcc-ChhhhcccCCCCEEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccChh------hc
Confidence 467777777763 2211 01223456777777777763 22110 001145677777777776554433221 34
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|++|++++|.+++. .. ...+++|++|+|++| .+++.....+..++ +|++|+|+++. ++....
T Consensus 193 ~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~---~L~~L~L~~n~-l~~~~~----- 259 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDM--PN-LTPLVGLEELEMSGN-HFPEIRPGSFHGLS---SLKKLWVMNSQ-VSLIER----- 259 (452)
T ss_dssp TTCTTCCEEECTTSCCSSC--CC-CTTCTTCCEEECTTS-CCSEECGGGGTTCT---TCCEEECTTSC-CCEECT-----
T ss_pred cCCCCCCEEECCCCccccc--cc-ccccccccEEECcCC-cCcccCcccccCcc---CCCEEEeCCCc-CceECH-----
Confidence 5677777777777766532 12 234677777777777 66654344444444 37777777753 332111
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhh
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEV 458 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l 458 (547)
.....+++|+.|+|++|...+-..+.+..+++|+.+.+..+
T Consensus 260 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 260 -NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp -TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred -HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 01135677888888777544334445566777766655443
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.88 E-value=6.9e-10 Score=109.85 Aligned_cols=186 Identities=13% Similarity=0.036 Sum_probs=126.3
Q ss_pred CCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccC-CCHHHHHHH
Q 042559 282 CPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFK-LPDYKIRIL 360 (547)
Q Consensus 282 ~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~-ltd~~l~~l 360 (547)
.++|++|+++++. ++..... ....+++|++|++++|. ++.... ..+..+++|++|++++|. ++......+
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~------~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAA-SFRACRNLTILWLHSNV-LARIDA------AAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC-CCEECT------TTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred CCCceEEEeeCCc-CCccCHH-HcccCCCCCEEECCCCc-cceeCH------hhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 5689999999873 3322111 11678999999999885 333221 245678999999999985 655433333
Q ss_pred HhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccc
Q 042559 361 LKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASE 440 (547)
Q Consensus 361 ~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~ 440 (547)
..+++|++|++++| .+++.....+..++ +|++|+++++. ++.... ...+.+++|++|++++|...+-.
T Consensus 102 -~~l~~L~~L~l~~n-~l~~~~~~~~~~l~---~L~~L~l~~n~-l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 102 -HGLGRLHTLHLDRC-GLQELGPGLFRGLA---ALQYLYLQDNA-LQALPD------DTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp -TTCTTCCEEECTTS-CCCCCCTTTTTTCT---TCCEEECCSSC-CCCCCT------TTTTTCTTCCEEECCSSCCCEEC
T ss_pred -cCCcCCCEEECCCC-cCCEECHhHhhCCc---CCCEEECCCCc-ccccCH------hHhccCCCccEEECCCCcccccC
Confidence 45899999999999 77654333344444 59999999864 332211 01246899999999999654334
Q ss_pred hhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCccc
Q 042559 441 GDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEISLP 495 (547)
Q Consensus 441 ~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~~~ 495 (547)
...+..+++|+.+.+.... +.+..|...+.+..+..++...|....+|
T Consensus 170 ~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNR-------VAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp TTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred HHHhcCccccCEEECCCCc-------ccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 4567889999988887665 44445666677777888888888543343
No 65
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.87 E-value=1.5e-08 Score=93.93 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=82.2
Q ss_pred CccEEEEeCCCCCCHHHHHHHHh---cCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 258 LLRRLHLYNIERMDNASLSMALS---ACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~---~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
+|++|+|++|..+++.++..++. .+++|++|+|++| .+.+.+...++.
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~---------------------------- 87 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAE---------------------------- 87 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHH----------------------------
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHH----------------------------
Confidence 69999999987888887776654 5678999999988 688888766654
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhc---CCCCcEEec--cCCCCCCHHHHHHHHc-CCCCCCccEEeeeCCCCCCH
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKG---FRKLKYVDF--STSYSITGAFLRNLGS-GTGGNLLEVLILRDCMHLKE 408 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~---~~~L~~L~L--s~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls~C~~L~~ 408 (547)
.+...++|++|+|++|.+++.+...+++. ++.|++|+| ++| .|++.+...++. +...++|++|+|++|. +++
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~ 165 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGP 165 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHH
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC-CCh
Confidence 22334567777777777777766665543 456777777 555 777776666554 2223347777777653 444
Q ss_pred H
Q 042559 409 V 409 (547)
Q Consensus 409 ~ 409 (547)
.
T Consensus 166 ~ 166 (185)
T 1io0_A 166 R 166 (185)
T ss_dssp H
T ss_pred H
Confidence 4
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.87 E-value=2.8e-10 Score=114.77 Aligned_cols=189 Identities=18% Similarity=0.128 Sum_probs=126.0
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|++|+|++|...... . ...+++|++|++++|. ++. + ..+++|++|++++|. ++... ..
T Consensus 59 ~L~~L~Ls~n~l~~~~---~-~~~l~~L~~L~Ls~n~-l~~--l----~~~~~L~~L~l~~n~-l~~~~---------~~ 117 (317)
T 3o53_A 59 KLELLNLSSNVLYETL---D-LESLSTLRTLDLNNNY-VQE--L----LVGPSIETLHAANNN-ISRVS---------CS 117 (317)
T ss_dssp TCCEEECTTSCCEEEE---E-ETTCTTCCEEECCSSE-EEE--E----EECTTCCEEECCSSC-CSEEE---------EC
T ss_pred cCCEEECCCCcCCcch---h-hhhcCCCCEEECcCCc-ccc--c----cCCCCcCEEECCCCc-cCCcC---------cc
Confidence 6899999888432111 1 4568889999988873 321 1 245788889888875 32221 22
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHH-cCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLG-SGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~-~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
.+++|++|++++|.++......+ ..+++|++|++++| .+++.....+. .++ +|++|+|++|. ++....
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~---~L~~L~L~~N~-l~~~~~----- 186 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSD---TLEHLNLQYNF-IYDVKG----- 186 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTS-CCCEEEGGGGGGGTT---TCCEEECTTSC-CCEEEC-----
T ss_pred ccCCCCEEECCCCCCCCccchhh-hccCCCCEEECCCC-CCCcccHHHHhhccC---cCCEEECCCCc-Cccccc-----
Confidence 36789999999988776433223 34788999999998 77765444443 244 49999999864 433211
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
...+++|++|++++|... ..+..+..+++|+.+.+..+. + ..+|.....++.+..++...|.
T Consensus 187 ---~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~-------l-~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 187 ---QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-------L-VLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp ---CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC-------C-CEECTTCCCCTTCCEEECTTCC
T ss_pred ---ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCc-------c-cchhhHhhcCCCCCEEEccCCC
Confidence 124788999999998544 434457788888888877664 2 1466666677777788888875
No 67
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=1.3e-09 Score=124.21 Aligned_cols=107 Identities=16% Similarity=0.083 Sum_probs=61.0
Q ss_pred CccEEEEeCCCCCCHHHHHHHH-------hcCCCccEEEEecCCCCCHHHHHH--HHhcCCCccEEEecCCCCCCCCcCC
Q 042559 258 LLRRLHLYNIERMDNASLSMAL-------SACPSLLDLEIVGLHVELRQTLMS--VSMSCPLLERLFFESSKTGRDDSLK 328 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~-------~~~~~L~~L~Ls~c~~i~~~~l~~--l~~~~~~L~~L~L~~c~~l~~~~l~ 328 (547)
+|+.|+|++|..++...++... ..+++|++|+|++|. ++ .+.. ....+++|+.|++++|. ++ .++
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~--~lp 589 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE--EFPASASLQKMVKLGLLDCVHNK-VR--HLE 589 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC--BCCCHHHHTTCTTCCEEECTTSC-CC--BCC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC--ccCChhhhhcCCCCCEEECCCCC-cc--cch
Confidence 6888888888546542333322 244588888888873 32 1111 22677888888888775 22 222
Q ss_pred CcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCC-CcEEeccCCCCCC
Q 042559 329 SPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRK-LKYVDFSTSYSIT 379 (547)
Q Consensus 329 ~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~-L~~L~Ls~c~~lt 379 (547)
.+..+++|+.|++++|.++ .+..-...+++ |++|+|++| .++
T Consensus 590 ------~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N-~L~ 632 (876)
T 4ecn_A 590 ------AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHN-KLK 632 (876)
T ss_dssp ------CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSS-CCC
T ss_pred ------hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCC-CCC
Confidence 2345666677777666555 11111223555 666666666 444
No 68
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.84 E-value=4.7e-10 Score=116.28 Aligned_cols=208 Identities=13% Similarity=0.097 Sum_probs=109.5
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCC--CCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHV--ELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~--i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
+|++|+|++|. ++... ......+++|++|+++++.- +....+ .++++|++|++++|. ++. +.. .+
T Consensus 70 ~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~-l~~--l~~----~~ 136 (390)
T 3o6n_A 70 QVELLNLNDLQ-IEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVF----QNVPLLTVLVLERND-LSS--LPR----GI 136 (390)
T ss_dssp CCSEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSC-CCC--CCT----TT
T ss_pred cCcEEECCCCc-ccccC-hhhccCCCCcCEEECCCCCCCcCCHHHh----cCCCCCCEEECCCCc-cCc--CCH----HH
Confidence 57777777763 32210 11234567777777776631 111122 456777777777764 322 111 13
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHH-
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARF- 414 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~- 414 (547)
...+++|++|++++|.++......+ ..+++|++|++++| .+++.. +..+++ |++|+++++. ++.......
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~---~~~l~~---L~~L~l~~n~-l~~~~~~~~L 207 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSN-RLTHVD---LSLIPS---LFHANVSYNL-LSTLAIPIAV 207 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTT-SSCTTCCEEECCSS-CCSBCC---GGGCTT---CSEEECCSSC-CSEEECCSSC
T ss_pred hcCCCCCcEEECCCCccCccChhhc-cCCCCCCEEECCCC-cCCccc---cccccc---cceeeccccc-ccccCCCCcc
Confidence 4567777777777776654322222 34677777777777 555432 222222 4444444321 110000000
Q ss_pred ---------HHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCccccccccc
Q 042559 415 ---------LTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVD 485 (547)
Q Consensus 415 ---------l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~ 485 (547)
+........++|+.|++++|..... .++..+++|+.+.+.... +.+..|...+.+..+..++
T Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 208 EELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE-------LEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp SEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-------CCEEESGGGTTCSSCCEEE
T ss_pred eEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCc-------CCCcChhHccccccCCEEE
Confidence 0000012345677777777754432 567788888888776654 3334455556677777788
Q ss_pred ccccccCcccc
Q 042559 486 SEFNSEISLPS 496 (547)
Q Consensus 486 ~~~n~~~~~~~ 496 (547)
...|....+|.
T Consensus 279 L~~n~l~~~~~ 289 (390)
T 3o6n_A 279 ISNNRLVALNL 289 (390)
T ss_dssp CCSSCCCEEEC
T ss_pred CCCCcCcccCc
Confidence 88876434443
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.84 E-value=1e-09 Score=111.11 Aligned_cols=221 Identities=12% Similarity=0.011 Sum_probs=134.3
Q ss_pred CCccEEEecccCCCCCCCccchhHHHHHhcCcccceeecCCCcccCCchhHHHHhhCCCCCccCcCcCCCCccEEEEeCC
Q 042559 188 KSLQSLKLGIVPGPTASPWSCQSLVYTIRNSVDVSSFSWNDKKTRQGKESFILTRSCLNPLSGESGAAGSLLRRLHLYNI 267 (547)
Q Consensus 188 ~~L~~L~L~~~~~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~~~~~~~~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~~c 267 (547)
+.++.|+++++.-. .. ....+.++.+++.|.+.+.. ..+..... -...++|++|+|++|
T Consensus 52 ~~l~~L~L~~n~i~-~~------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-------------~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EI------KDGDFKNLKNLHTLILINNK-ISKISPGA-------------FAPLVKLERLYLSKN 110 (330)
T ss_dssp TTCCEEECCSSCCC-CB------CTTTTTTCTTCCEEECCSSC-CCCBCTTT-------------TTTCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCC-Ee------ChhhhccCCCCCEEECCCCc-CCeeCHHH-------------hcCCCCCCEEECCCC
Confidence 56778888654211 11 11135667777777665432 12211101 112357899999887
Q ss_pred CCCCHHHHHHHHhcCCCccEEEEecCC--CCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceE
Q 042559 268 ERMDNASLSMALSACPSLLDLEIVGLH--VELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSM 345 (547)
Q Consensus 268 ~~lt~~~L~~l~~~~~~L~~L~Ls~c~--~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L 345 (547)
. ++. +.. ...++|++|+++++. .+....+ .++++|++|++++|.. +...+.. .....+++|++|
T Consensus 111 ~-l~~--l~~--~~~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l-~~~~~~~----~~~~~l~~L~~L 176 (330)
T 1xku_A 111 Q-LKE--LPE--KMPKTLQELRVHENEITKVRKSVF----NGLNQMIVVELGTNPL-KSSGIEN----GAFQGMKKLSYI 176 (330)
T ss_dssp C-CSB--CCS--SCCTTCCEEECCSSCCCBBCHHHH----TTCTTCCEEECCSSCC-CGGGBCT----TGGGGCTTCCEE
T ss_pred c-CCc--cCh--hhcccccEEECCCCcccccCHhHh----cCCccccEEECCCCcC-CccCcCh----hhccCCCCcCEE
Confidence 4 331 111 123689999998873 2223333 6789999999998763 2211111 256678999999
Q ss_pred EeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCC
Q 042559 346 ALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKF 425 (547)
Q Consensus 346 ~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~ 425 (547)
++++|.++.-.. ...++|++|++++| .+++.....+..++ +|++|+|++|. ++.... . ..+.+++
T Consensus 177 ~l~~n~l~~l~~----~~~~~L~~L~l~~n-~l~~~~~~~~~~l~---~L~~L~Ls~n~-l~~~~~-~-----~~~~l~~ 241 (330)
T 1xku_A 177 RIADTNITTIPQ----GLPPSLTELHLDGN-KITKVDAASLKGLN---NLAKLGLSFNS-ISAVDN-G-----SLANTPH 241 (330)
T ss_dssp ECCSSCCCSCCS----SCCTTCSEEECTTS-CCCEECTGGGTTCT---TCCEEECCSSC-CCEECT-T-----TGGGSTT
T ss_pred ECCCCccccCCc----cccccCCEEECCCC-cCCccCHHHhcCCC---CCCEEECCCCc-CceeCh-h-----hccCCCC
Confidence 999987663110 11378999999998 77765444455555 49999999864 333211 0 0125788
Q ss_pred ccEEeeeCCCCCccchhhhccCCCCCccchhhhh
Q 042559 426 LRHLDISNREGLASEGDWYDRCFNSRIIPLKEVS 459 (547)
Q Consensus 426 L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~ 459 (547)
|++|+|++|.. +..+.++..+++|+.+.+..+.
T Consensus 242 L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 242 LRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSC
T ss_pred CCEEECCCCcC-ccCChhhccCCCcCEEECCCCc
Confidence 99999999854 4656678888888888776554
No 70
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=5e-10 Score=99.62 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=33.1
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHH-HHHHHHcCCCCCCccEEeeeCC
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGA-FLRNLGSGTGGNLLEVLILRDC 403 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~-~l~~L~~~~~l~~L~~L~Ls~C 403 (547)
+..+++|++|++++|.+++. +......+++|++|++++| .+++. .+..+..+++ |++|++++|
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~---L~~L~l~~N 123 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLEN---LKSLDLFNC 123 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTT---CCEEECTTC
T ss_pred hhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCC---CCEEeCcCC
Confidence 34456666666666655542 2223334666666666666 55542 2233444443 666666665
No 71
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.83 E-value=1.5e-10 Score=127.09 Aligned_cols=137 Identities=12% Similarity=-0.042 Sum_probs=71.6
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHH-HHHHcCCCCCCccEEeeeCCCCCCHHHHHH
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFL-RNLGSGTGGNLLEVLILRDCMHLKEVEVAR 413 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l-~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~ 413 (547)
....+++|++|++++|.++... .....+++|++|++++| .+++... ..+.. +++|++|++++|.... ...
T Consensus 371 ~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~---l~~L~~L~l~~n~l~~-~~~-- 441 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHS-TLKRVTEFSAFLS---LEKLLYLDISYTNTKI-DFD-- 441 (606)
T ss_dssp HHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTS-EEESTTTTTTTTT---CTTCCEEECTTSCCEE-CCT--
T ss_pred hhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCC-ccCCccChhhhhc---cccCCEEECcCCCCCc-cch--
Confidence 3445555555555555433211 11223556666666665 3433211 12222 2336666666654211 000
Q ss_pred HHHHhhcCCCCCccEEeeeCCCCCcc-chhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCccccccccccccccc
Q 042559 414 FLTAVLTGDFKFLRHLDISNREGLAS-EGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSE 491 (547)
Q Consensus 414 ~l~~~l~~~~~~L~~L~Ls~c~~l~~-~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~ 491 (547)
...+.+++|++|++++|...+. .+..+..+++|+.+.+..+. +.+..|...+.+..++.++...|..
T Consensus 442 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 442 ----GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-------LEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ----TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ----hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-------CCccChhhhcccccCCEEECCCCcC
Confidence 0013566777777777754442 34556667777766666554 4444555667777888888888753
No 72
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.83 E-value=2.7e-09 Score=106.27 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=64.7
Q ss_pred hcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHH
Q 042559 280 SACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRI 359 (547)
Q Consensus 280 ~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~ 359 (547)
..+++|++|++++|.-..... ...+++|++|++++|. +++ +. .+..+++|++|++++|.+++- ..
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~--~~------~l~~l~~L~~L~L~~n~i~~~--~~ 129 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENK-VKD--LS------SLKDLKKLKSLSLEHNGISDI--NG 129 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-CCC--GG------GGTTCTTCCEEECTTSCCCCC--GG
T ss_pred hcCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCc-CCC--Ch------hhccCCCCCEEECCCCcCCCC--hh
Confidence 345555555555542111111 2445555555555553 211 11 234455555565555544432 11
Q ss_pred HHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 360 LLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 360 l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
+ ..+++|++|++++| .+++. ..+..+++ |++|++++|. +++... ...+++|++|++++|.. ++
T Consensus 130 l-~~l~~L~~L~l~~n-~l~~~--~~l~~l~~---L~~L~L~~N~-l~~~~~--------l~~l~~L~~L~L~~N~i-~~ 192 (291)
T 1h6t_A 130 L-VHLPQLESLYLGNN-KITDI--TVLSRLTK---LDTLSLEDNQ-ISDIVP--------LAGLTKLQNLYLSKNHI-SD 192 (291)
T ss_dssp G-GGCTTCCEEECCSS-CCCCC--GGGGGCTT---CSEEECCSSC-CCCCGG--------GTTCTTCCEEECCSSCC-CB
T ss_pred h-cCCCCCCEEEccCC-cCCcc--hhhccCCC---CCEEEccCCc-cccchh--------hcCCCccCEEECCCCcC-CC
Confidence 2 23555566666555 44432 22333332 5556655542 222110 12455566666655532 22
Q ss_pred chhhhccCCCCCccchhh
Q 042559 440 EGDWYDRCFNSRIIPLKE 457 (547)
Q Consensus 440 ~~~~l~~c~~L~~l~l~~ 457 (547)
. ..+..+++|+.+.+..
T Consensus 193 l-~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 193 L-RALAGLKNLDVLELFS 209 (291)
T ss_dssp C-GGGTTCTTCSEEEEEE
T ss_pred C-hhhccCCCCCEEECcC
Confidence 2 2244555555554443
No 73
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.83 E-value=4.3e-10 Score=124.49 Aligned_cols=11 Identities=27% Similarity=0.093 Sum_probs=8.1
Q ss_pred CCccEEEEeCC
Q 042559 257 SLLRRLHLYNI 267 (547)
Q Consensus 257 ~~L~~L~L~~c 267 (547)
++|++|+|++|
T Consensus 105 ~~L~~L~Ls~N 115 (636)
T 4eco_A 105 TELEVLALGSH 115 (636)
T ss_dssp TTCCEEESCCG
T ss_pred ccceEEECcCC
Confidence 36888888776
No 74
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.83 E-value=4.6e-10 Score=124.27 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=67.3
Q ss_pred cCCccEEEecccCCCCCCCccchhHHHHHhcCcccceeecCCCcccCC-chhHHHHhhCCCCCccCcCcCCCCccEEEEe
Q 042559 187 GKSLQSLKLGIVPGPTASPWSCQSLVYTIRNSVDVSSFSWNDKKTRQG-KESFILTRSCLNPLSGESGAAGSLLRRLHLY 265 (547)
Q Consensus 187 ~~~L~~L~L~~~~~~~~~~~~c~~l~~~~~~c~~l~~Lsl~~~~~~~~-~~~~~l~~~c~~~l~~~~~~~~~~L~~L~L~ 265 (547)
.+.|++|+|+.+...+..+ ..+.++.+++.|.+.+.....+ .....+..... ....++|++|+|+
T Consensus 248 l~~L~~L~L~~n~l~~~~p-------~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~-------~~~l~~L~~L~L~ 313 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLP-------TFLKALPEMQLINVACNRGISGEQLKDDWQALAD-------APVGEKIQIIYIG 313 (636)
T ss_dssp CTTCCEEEEECCTTCSSCC-------TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHH-------SGGGGTCCEEECC
T ss_pred cCCCCEEEecCCcCCccCh-------HHHhcCCCCCEEECcCCCCCccccchHHHHhhhc-------cccCCCCCEEECC
Confidence 4678899998664333222 2344566777777655431222 11222222100 0001257777777
Q ss_pred CCCCCCHHHHHH--HHhcCCCccEEEEecCCCCCHH-HHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCC-
Q 042559 266 NIERMDNASLSM--ALSACPSLLDLEIVGLHVELRQ-TLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPN- 341 (547)
Q Consensus 266 ~c~~lt~~~L~~--l~~~~~~L~~L~Ls~c~~i~~~-~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~- 341 (547)
+|. ++ .+.. ....+++|++|+++++.-.... .+ ..+++|++|++++|. ++ .++ ..+..+++
T Consensus 314 ~n~-l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~----~~l~~L~~L~L~~N~-l~--~lp-----~~l~~l~~~ 378 (636)
T 4eco_A 314 YNN-LK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAF----GSEIKLASLNLAYNQ-IT--EIP-----ANFCGFTEQ 378 (636)
T ss_dssp SSC-CS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCC----EEEEEESEEECCSSE-EE--ECC-----TTSEEECTT
T ss_pred CCc-CC--ccCchhhhccCCCCCEEeCcCCcCccchhhh----CCCCCCCEEECCCCc-cc--ccc-----Hhhhhhccc
Confidence 763 33 2433 4556777777777765311010 11 345566666666553 11 122 12344555
Q ss_pred cceEEeeccCCC
Q 042559 342 LTSMALRGFKLP 353 (547)
Q Consensus 342 L~~L~L~~~~lt 353 (547)
|++|++++|.++
T Consensus 379 L~~L~Ls~N~l~ 390 (636)
T 4eco_A 379 VENLSFAHNKLK 390 (636)
T ss_dssp CCEEECCSSCCS
T ss_pred CcEEEccCCcCc
Confidence 666666665544
No 75
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.82 E-value=4.1e-10 Score=102.33 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=59.6
Q ss_pred hcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHH-HHH
Q 042559 306 MSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGA-FLR 384 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~-~l~ 384 (547)
..+++|+.|++++|. ++.. . .+..+++|++|++++|.+++. +..+...+++|++|++++| .+++. .+.
T Consensus 46 ~~l~~L~~L~l~~n~-l~~~--~------~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 114 (168)
T 2ell_A 46 AEFVNLEFLSLINVG-LISV--S------NLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGN-KLKDISTLE 114 (168)
T ss_dssp GGGGGCCEEEEESSC-CCCC--S------SCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSS-SCCSSGGGG
T ss_pred HhCCCCCEEeCcCCC-CCCh--h------hhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCC-ccCcchhHH
Confidence 344555666665554 2221 1 344566777777777666543 2233344677777777777 56552 123
Q ss_pred HHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCC
Q 042559 385 NLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREG 436 (547)
Q Consensus 385 ~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~ 436 (547)
.+..++ +|++|++++|. ++...... .. ....+++|++|++++|..
T Consensus 115 ~l~~l~---~L~~L~l~~N~-l~~~~~~~--~~-~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 115 PLKKLE---CLKSLDLFNCE-VTNLNDYR--ES-VFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp GGSSCS---CCCEEECCSSG-GGTSTTHH--HH-HHTTCSSCCEETTEETTS
T ss_pred HHhcCC---CCCEEEeeCCc-CcchHHHH--HH-HHHhCccCcEecCCCCCh
Confidence 333333 47777777753 22211100 00 113677888888887754
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.82 E-value=6.3e-11 Score=128.85 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=15.4
Q ss_pred CCCCccEEeeeCCCCCccchhhhccCCCCCccchh
Q 042559 422 DFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLK 456 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~ 456 (547)
.+++|+.|+|++|...+..+..+..+++|+.+.+.
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 34445555555443332233444444444444443
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.82 E-value=7.2e-10 Score=126.72 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=9.5
Q ss_pred CCcccccccccccccc
Q 042559 475 GSFIDIEQMVDSEFNS 490 (547)
Q Consensus 475 ~~~~~~~~~l~~~~n~ 490 (547)
...++.+..++...|.
T Consensus 358 ~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCSCCCCCEEEEETCC
T ss_pred hcCCCCCCEEECCCCC
Confidence 3445566666666664
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.81 E-value=3.3e-10 Score=121.34 Aligned_cols=189 Identities=17% Similarity=0.119 Sum_probs=102.8
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|++|+|++|...... . +..+++|++|+|++|. ++.. ...++|++|++++|. ++... ..
T Consensus 59 ~L~~L~Ls~N~l~~~~---~-l~~l~~L~~L~Ls~N~-l~~l------~~~~~L~~L~L~~N~-l~~~~---------~~ 117 (487)
T 3oja_A 59 KLELLNLSSNVLYETL---D-LESLSTLRTLDLNNNY-VQEL------LVGPSIETLHAANNN-ISRVS---------CS 117 (487)
T ss_dssp TCCEEECTTSCCEEEE---E-CTTCTTCCEEECCSSE-EEEE------EECTTCCEEECCSSC-CCCEE---------EC
T ss_pred CCCEEEeeCCCCCCCc---c-cccCCCCCEEEecCCc-CCCC------CCCCCcCEEECcCCc-CCCCC---------cc
Confidence 5777777766431111 1 3456777777777662 2211 233667777777664 22211 12
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHH-cCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLG-SGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~-~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
.+++|++|++++|.++......+ ..+++|++|+|++| .+++..+..+. .++ +|++|+|++|. ++...
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~---~L~~L~Ls~N~-l~~~~------ 185 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSD---TLEHLNLQYNF-IYDVK------ 185 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTS-CCCEEEGGGGGGGTT---TCCEEECTTSC-CCEEE------
T ss_pred ccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCC-CCCCcChHHHhhhCC---cccEEecCCCc-ccccc------
Confidence 35667777777776654332222 23667777777776 66654444443 233 37777777653 33221
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
....+++|+.|+|++|... ..+..+..+++|+.+.+..+. +. .+|...+.++.+..++...|.
T Consensus 186 --~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~-------l~-~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 186 --GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-------LV-LIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp --CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC-------CC-EECTTCCCCTTCCEEECTTCC
T ss_pred --ccccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCc-------Cc-ccchhhccCCCCCEEEcCCCC
Confidence 0124667777777776533 333346666777666665543 11 255555555666666666664
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.81 E-value=6.1e-10 Score=122.33 Aligned_cols=211 Identities=14% Similarity=0.068 Sum_probs=122.3
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|+.|+|++|. ++.. ....+..+++|++|+|++|. ++.... ....++++|++|+|++|. ++. +.. .++.
T Consensus 76 ~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~--l~~----~~~~ 144 (597)
T 3oja_B 76 QVELLNLNDLQ-IEEI-DTYAFAYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERND-LSS--LPR----GIFH 144 (597)
T ss_dssp CCSEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCC--CCT----TTTT
T ss_pred CCcEEECCCCC-CCCC-ChHHhcCCCCCCEEECCCCc-CCCCCH-HHHcCCCCCCEEEeeCCC-CCC--CCH----HHhc
Confidence 68888888874 3321 11133567888888888763 222110 111567888888888875 332 221 2446
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHH--
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFL-- 415 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l-- 415 (547)
++++|++|++++|.++......+ .++++|++|+|++| .+++.. +..+++ |+.|+++++. ++.......+
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~---~~~l~~---L~~L~l~~n~-l~~l~~~~~L~~ 215 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSN-RLTHVD---LSLIPS---LFHANVSYNL-LSTLAIPIAVEE 215 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECTTS-CCSBCC---GGGCTT---CSEEECCSSC-CSEEECCTTCSE
T ss_pred cCCCCCEEEeeCCcCCCCChhhh-hcCCcCcEEECcCC-CCCCcC---hhhhhh---hhhhhcccCc-cccccCCchhhe
Confidence 77888888888887664333233 35788888888888 666532 222332 5555555431 1110000000
Q ss_pred --------HHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCccccccccccc
Q 042559 416 --------TAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSE 487 (547)
Q Consensus 416 --------~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~ 487 (547)
........++|+.|+|++|...+. .++..+++|+.+.+..+. +.+..|...+.+..+..+++.
T Consensus 216 L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 216 LDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE-------LEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp EECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-------CCEEESGGGTTCSSCCEEECT
T ss_pred eeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCc-------cCCCCHHHhcCccCCCEEECC
Confidence 000011235677788877754432 567888888888877665 445556666777888888888
Q ss_pred ccccCccccc
Q 042559 488 FNSEISLPSQ 497 (547)
Q Consensus 488 ~n~~~~~~~~ 497 (547)
.|....+|..
T Consensus 287 ~N~l~~l~~~ 296 (597)
T 3oja_B 287 NNRLVALNLY 296 (597)
T ss_dssp TSCCCEEECS
T ss_pred CCCCCCCCcc
Confidence 8864444443
No 80
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.81 E-value=1.6e-09 Score=115.05 Aligned_cols=182 Identities=15% Similarity=0.070 Sum_probs=121.3
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|++|+|++|. ++. +. ...+++|++|++++|. ++... ...+++|++|++++|. ++... +
T Consensus 64 ~~L~~L~Ls~n~-l~~--~~--~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~L~~L~L~~N~-l~~l~---------~ 123 (457)
T 3bz5_A 64 TGLTKLICTSNN-ITT--LD--LSQNTNLTYLACDSNK-LTNLD----VTPLTKLTYLNCDTNK-LTKLD---------V 123 (457)
T ss_dssp TTCSEEECCSSC-CSC--CC--CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECCSSC-CSCCC---------C
T ss_pred CCCCEEEccCCc-CCe--Ec--cccCCCCCEEECcCCC-Cceee----cCCCCcCCEEECCCCc-CCeec---------C
Confidence 478899988884 433 11 4577888999988874 33322 2678889999998875 33321 3
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|++|++++|.++... ...+++|++|++++|..++.. .+. .+++|++|++++| +++...
T Consensus 124 ~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~---~~~---~l~~L~~L~ls~n-~l~~l~------ 186 (457)
T 3bz5_A 124 SQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL---DVT---PQTQLTTLDCSFN-KITELD------ 186 (457)
T ss_dssp TTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC---CCT---TCTTCCEEECCSS-CCCCCC------
T ss_pred CCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc---ccc---cCCcCCEEECCCC-ccceec------
Confidence 46788999999888776532 345888999999888555432 122 3345999999886 344422
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCccccccccccccccc
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSE 491 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~ 491 (547)
.+.+++|+.|++++|....- .+..+++|+.+.+.... +.+ +| .+.+..+..++...|..
T Consensus 187 ---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~-------l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 187 ---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNK-------LTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSC-------CSC-CC--CTTCTTCSEEECCSSCC
T ss_pred ---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCc-------ccc-cC--ccccCCCCEEEeeCCcC
Confidence 24688899999998865433 36678888888776654 212 44 45567777788888853
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.81 E-value=7.9e-10 Score=126.41 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=21.4
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecC
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGL 293 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c 293 (547)
.++|++|+|++|.. +.......+..+++|++|+|+++
T Consensus 122 L~~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 122 LKALTRLDLSKNQI-RSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CSSCCEEEEESCCC-CCCCCCGGGGTCSSCCEEEEESS
T ss_pred cCCCCEEECCCCcc-cccccchhHhhCCCCCEEECCCC
Confidence 34677777777743 22111123456777777777775
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.81 E-value=3.2e-10 Score=109.27 Aligned_cols=179 Identities=11% Similarity=0.049 Sum_probs=115.8
Q ss_pred CCCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCC---HHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcc
Q 042559 255 AGSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVEL---RQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPT 331 (547)
Q Consensus 255 ~~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~---~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~ 331 (547)
.+++|++|+++++. ++.-. ......+++|++|+++++..++ ...+ .++++|++|++++|..++....
T Consensus 29 ~~~~l~~L~l~~n~-l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f----~~l~~L~~L~l~~~n~l~~i~~---- 98 (239)
T 2xwt_C 29 LPPSTQTLKLIETH-LRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSF----YNLSKVTHIEIRNTRNLTYIDP---- 98 (239)
T ss_dssp CCTTCCEEEEESCC-CSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTE----ESCTTCCEEEEEEETTCCEECT----
T ss_pred CCCcccEEEEeCCc-ceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHc----CCCcCCcEEECCCCCCeeEcCH----
Confidence 34579999999984 33211 1134578999999999885232 2233 6789999999998444543222
Q ss_pred hHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCc---EEeccCCCCCCHHHHHHHHcCCCCCCcc-EEeeeCCCCCC
Q 042559 332 CVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLK---YVDFSTSYSITGAFLRNLGSGTGGNLLE-VLILRDCMHLK 407 (547)
Q Consensus 332 l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~---~L~Ls~c~~lt~~~l~~L~~~~~l~~L~-~L~Ls~C~~L~ 407 (547)
.....+++|++|++++|.++. +.. ...+++|+ +|++++|..++......+..+ ++|+ +|+++++. ++
T Consensus 99 --~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l---~~L~~~L~l~~n~-l~ 169 (239)
T 2xwt_C 99 --DALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL---CNETLTLKLYNNG-FT 169 (239)
T ss_dssp --TSEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT---BSSEEEEECCSCC-CC
T ss_pred --HHhCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccch---hcceeEEEcCCCC-Cc
Confidence 245678999999999987765 222 34577787 999998855654322223333 3599 99998853 43
Q ss_pred HHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc-chhhhccC-CCCCccchhhhh
Q 042559 408 EVEVARFLTAVLTGDFKFLRHLDISNREGLAS-EGDWYDRC-FNSRIIPLKEVS 459 (547)
Q Consensus 408 ~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~-~~~~l~~c-~~L~~l~l~~l~ 459 (547)
.... ... ..++|++|++++|..++. ..+.+..+ ++|+.+.+....
T Consensus 170 ~i~~------~~~-~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 170 SVQG------YAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp EECT------TTT-TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred ccCH------hhc-CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 2211 001 236899999999975666 34566777 888887776543
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.79 E-value=2e-09 Score=119.78 Aligned_cols=60 Identities=12% Similarity=0.027 Sum_probs=29.7
Q ss_pred CCccEEeeeCCCCCccchhhhccCCC--CCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 424 KFLRHLDISNREGLASEGDWYDRCFN--SRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 424 ~~L~~L~Ls~c~~l~~~~~~l~~c~~--L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
++|+.|++++|...+..+..+..++. |+.+.+.... +.+..|...+.+..+..++...|.
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-------LNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-------cCccCcccccCcccccEeeCCCCc
Confidence 45555555555443333344444432 5555544433 222334445556666667776664
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.78 E-value=1.6e-09 Score=106.54 Aligned_cols=197 Identities=12% Similarity=0.108 Sum_probs=128.4
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCC--CCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHV--ELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~--i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
+++.++++++. ++. ++. ...++|++|+|+++.- +....+ .++++|++|++++|. ++.... ..
T Consensus 17 ~~~~l~~~~~~-l~~--ip~--~~~~~l~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~-l~~i~~------~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTA--IPS--NIPADTKKLDLQSNKLSSLPSKAF----HRLTKLRLLYLNDNK-LQTLPA------GI 80 (270)
T ss_dssp TTTEEECTTSC-CSS--CCS--CCCTTCSEEECCSSCCSCCCTTSS----SSCTTCCEEECCSSC-CSCCCT------TT
T ss_pred CCCEEEccCCC-CCc--cCC--CCCCCCCEEECcCCCCCeeCHHHh----cCCCCCCEEECCCCc-cCeeCh------hh
Confidence 46778887663 331 111 1235799999998742 222223 678999999999885 332221 24
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHH
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFL 415 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l 415 (547)
...+++|++|++++|.++..... ....+++|++|++++| .++......+..+ ++|++|+|+++. ++....
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l---~~L~~L~Ls~n~-l~~~~~---- 150 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIG-VFDQLVNLAELRLDRN-QLKSLPPRVFDSL---TKLTYLSLGYNE-LQSLPK---- 150 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTT-TTTTCSSCCEEECCSS-CCCCCCTTTTTTC---TTCCEEECCSSC-CCCCCT----
T ss_pred hcCCCCCCEEECCCCcCCcCCHh-HcccccCCCEEECCCC-ccCeeCHHHhCcC---cCCCEEECCCCc-CCccCH----
Confidence 56789999999999977643322 3346899999999998 6765433333344 459999999974 443211
Q ss_pred HHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCC-CCcccccccccccccc
Q 042559 416 TAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSE-GSFIDIEQMVDSEFNS 490 (547)
Q Consensus 416 ~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~-~~~~~~~~~l~~~~n~ 490 (547)
...+.+++|++|+|++|....-....+..+++|+.+.+..+. + ..+|.. ...+..+..++...|.
T Consensus 151 --~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------l-~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 151 --GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-------L-KRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-------C-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred --hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-------C-CcCCHHHhccccCCCEEEecCCC
Confidence 012468999999999996554455567888999888876654 1 133433 4456666777777774
No 85
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.77 E-value=2.8e-09 Score=113.21 Aligned_cols=95 Identities=17% Similarity=0.085 Sum_probs=44.5
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|++|++++|. ++. +. ...+++|++|+++++. ++...+ ..+++|++|++++|..+.... +.
T Consensus 107 ~L~~L~L~~N~-l~~--l~--~~~l~~L~~L~l~~N~-l~~l~l----~~l~~L~~L~l~~n~~~~~~~---------~~ 167 (457)
T 3bz5_A 107 KLTYLNCDTNK-LTK--LD--VSQNPLLTYLNCARNT-LTEIDV----SHNTQLTELDCHLNKKITKLD---------VT 167 (457)
T ss_dssp TCCEEECCSSC-CSC--CC--CTTCTTCCEEECTTSC-CSCCCC----TTCTTCCEEECTTCSCCCCCC---------CT
T ss_pred cCCEEECCCCc-CCe--ec--CCCCCcCCEEECCCCc-cceecc----ccCCcCCEEECCCCCcccccc---------cc
Confidence 56666666653 222 11 3455666666666552 222111 445566666666554333221 12
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCC
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTS 375 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c 375 (547)
.+++|++|++++|.++.-. ...+++|++|++++|
T Consensus 168 ~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTN 201 (457)
T ss_dssp TCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSS
T ss_pred cCCcCCEEECCCCccceec----cccCCCCCEEECcCC
Confidence 3455555555555444321 223455555555554
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.77 E-value=4.4e-09 Score=115.40 Aligned_cols=147 Identities=21% Similarity=0.223 Sum_probs=85.6
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|+.|+|++|.. +. +.. +..+++|+.|+|++|.-.....+ ..+++|+.|+|++|. +++ +. .+
T Consensus 65 ~~L~~L~Ls~N~l-~~--~~~-l~~l~~L~~L~Ls~N~l~~l~~l----~~l~~L~~L~Ls~N~-l~~--l~------~l 127 (605)
T 1m9s_A 65 PNVTKLFLNGNKL-TD--IKP-LTNLKNLGWLFLDENKIKDLSSL----KDLKKLKSLSLEHNG-ISD--IN------GL 127 (605)
T ss_dssp TTCCEEECTTSCC-CC--CGG-GGGCTTCCEEECCSSCCCCCTTS----TTCTTCCEEECTTSC-CCC--CG------GG
T ss_pred CCCCEEEeeCCCC-CC--Chh-hccCCCCCEEECcCCCCCCChhh----ccCCCCCEEEecCCC-CCC--Cc------cc
Confidence 4677777777743 22 111 45677777777777632221122 556777777777765 222 11 34
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|+.|+|++|.+++. .....+++|+.|+|++| .+++... +..++ +|++|+|++| .+++...
T Consensus 128 ~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~---~L~~L~Ls~N-~i~~l~~----- 192 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDN-QISDIVP--LAGLT---KLQNLYLSKN-HISDLRA----- 192 (605)
T ss_dssp GGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSS-CCCCCGG--GTTCT---TCCEEECCSS-CCCBCGG-----
T ss_pred cCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCC-cCCCchh--hccCC---CCCEEECcCC-CCCCChH-----
Confidence 5677777777777766553 22335777777777777 5654322 33344 3777777775 3443210
Q ss_pred HhhcCCCCCccEEeeeCCCCCc
Q 042559 417 AVLTGDFKFLRHLDISNREGLA 438 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~ 438 (547)
...+++|+.|+|++|+...
T Consensus 193 ---l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 193 ---LAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ---GTTCTTCSEEECCSEEEEC
T ss_pred ---HccCCCCCEEEccCCcCcC
Confidence 1357777777777775443
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.77 E-value=4.2e-09 Score=114.65 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=34.0
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCc--cEEEecCCC
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLL--ERLFFESSK 320 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L--~~L~L~~c~ 320 (547)
.++|++|+|++|. ++.-.+......+++|++|+++++ .++...+ ..+++| +.|++++|.
T Consensus 120 l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~~----~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 120 MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDL----LPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS-BCCTTTT----GGGTTSCEEEEEEEESS
T ss_pred cccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC-ccccCch----hhhhhceeeEEEeeccc
Confidence 4467888887774 332111123456777888888776 3443333 344555 777777664
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.75 E-value=5.4e-10 Score=110.08 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=17.2
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCC
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTS 375 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c 375 (547)
.+++|++|++++|.++...+......+++|++|++++|
T Consensus 122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 44555555555554433221112223455555555555
No 89
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=4.4e-09 Score=108.00 Aligned_cols=166 Identities=20% Similarity=0.210 Sum_probs=109.8
Q ss_pred CccEEEEeCCCC-------CCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCc
Q 042559 258 LLRRLHLYNIER-------MDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSP 330 (547)
Q Consensus 258 ~L~~L~L~~c~~-------lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~ 330 (547)
+|+.|.+..... ++...+..+...+|+|++|.|.++.......+ .+++|++|.|..|. +++..+.
T Consensus 140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-----~~~~L~~L~L~~~~-l~~~~l~-- 211 (362)
T 2ra8_A 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-----PRPNLKSLEIISGG-LPDSVVE-- 211 (362)
T ss_dssp TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-----BCTTCSEEEEECSB-CCHHHHH--
T ss_pred hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-----cCCCCcEEEEecCC-CChHHHH--
Confidence 577777754321 11123667778899999999998743321111 37899999998765 4333322
Q ss_pred chHHHh-cCCCCcceEEeecc--C-CCHHHH---HHHH--hcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeee
Q 042559 331 TCVDFV-NNCPNLTSMALRGF--K-LPDYKI---RILL--KGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILR 401 (547)
Q Consensus 331 ~l~~~~-~~~~~L~~L~L~~~--~-ltd~~l---~~l~--~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls 401 (547)
.+. ..+|+|++|+|..+ . ..+.++ ..+. ..+|+|++|+|.+| .+++.+...++..+.+++|++|+|+
T Consensus 212 ---~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 212 ---DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp ---HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred ---HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECC
Confidence 233 36899999998631 1 112112 2222 24899999999998 8988888888765556679999997
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 402 DCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 402 ~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
. +.+++.+...+... + .++++|+.|+|++|. +++
T Consensus 288 ~-n~L~d~G~~~L~~~-L-~~l~~L~~L~L~~n~-i~d 321 (362)
T 2ra8_A 288 A-GVLTDEGARLLLDH-V-DKIKHLKFINMKYNY-LSD 321 (362)
T ss_dssp S-SCCBHHHHHHHHTT-H-HHHTTCSEEECCSBB-CCH
T ss_pred C-CCCChHHHHHHHhh-c-ccCCcceEEECCCCc-CCH
Confidence 6 57999887443321 1 257899999999885 555
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.74 E-value=3.5e-09 Score=116.17 Aligned_cols=163 Identities=18% Similarity=0.171 Sum_probs=78.4
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|+.|++++|..-. +.. +..+++|+.|+|++|.-..... ...+++|+.|+|++|. ++. +. .+.
T Consensus 44 ~L~~L~l~~n~i~~---l~~-l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~--l~------~l~ 106 (605)
T 1m9s_A 44 SIDQIIANNSDIKS---VQG-IQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENK-IKD--LS------SLK 106 (605)
T ss_dssp TCCCCBCTTCCCCC---CTT-GGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCC--CT------TST
T ss_pred CCCEEECcCCCCCC---ChH-HccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCC-CCC--Ch------hhc
Confidence 35555555553211 111 2456666666666653211111 2456666666666654 221 11 234
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHH
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTA 417 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~ 417 (547)
.+++|++|+|++|.+++. ..+ ..+++|+.|+|++| .+++. ..+..++ +|++|+|++|. +++...
T Consensus 107 ~l~~L~~L~Ls~N~l~~l--~~l-~~l~~L~~L~Ls~N-~l~~l--~~l~~l~---~L~~L~Ls~N~-l~~~~~------ 170 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISDI--NGL-VHLPQLESLYLGNN-KITDI--TVLSRLT---KLDTLSLEDNQ-ISDIVP------ 170 (605)
T ss_dssp TCTTCCEEECTTSCCCCC--GGG-GGCTTCSEEECCSS-CCCCC--GGGGSCT---TCSEEECCSSC-CCCCGG------
T ss_pred cCCCCCEEEecCCCCCCC--ccc-cCCCccCEEECCCC-ccCCc--hhhcccC---CCCEEECcCCc-CCCchh------
Confidence 456666666666655431 222 24566666666666 55442 2233333 36666666653 222110
Q ss_pred hhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhh
Q 042559 418 VLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKE 457 (547)
Q Consensus 418 ~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~ 457 (547)
...+++|+.|+|++|.. ++. ..+..+++|+.|.+..
T Consensus 171 --l~~l~~L~~L~Ls~N~i-~~l-~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHI-SDL-RALAGLKNLDVLELFS 206 (605)
T ss_dssp --GTTCTTCCEEECCSSCC-CBC-GGGTTCTTCSEEECCS
T ss_pred --hccCCCCCEEECcCCCC-CCC-hHHccCCCCCEEEccC
Confidence 12456666666666633 222 2355566665554443
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.73 E-value=7.6e-09 Score=102.97 Aligned_cols=146 Identities=21% Similarity=0.213 Sum_probs=106.3
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|++|+|++|.. +. +.. ...+++|++|+++++.-..... ...+++|++|++++|. +++ +. .+.
T Consensus 69 ~L~~L~L~~n~l-~~--~~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~n~-i~~--~~------~l~ 131 (291)
T 1h6t_A 69 NVTKLFLNGNKL-TD--IKP-LANLKNLGWLFLDENKVKDLSS----LKDLKKLKSLSLEHNG-ISD--IN------GLV 131 (291)
T ss_dssp TCCEEECCSSCC-CC--CGG-GTTCTTCCEEECCSSCCCCGGG----GTTCTTCCEEECTTSC-CCC--CG------GGG
T ss_pred CCCEEEccCCcc-CC--Ccc-cccCCCCCEEECCCCcCCCChh----hccCCCCCEEECCCCc-CCC--Ch------hhc
Confidence 799999999854 32 222 5689999999999985333222 3678999999999986 333 22 456
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHH
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTA 417 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~ 417 (547)
.+++|++|++++|.+++. .. ...+++|++|++++| .+++... +..++ +|++|+|++| .+++...
T Consensus 132 ~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N-~l~~~~~--l~~l~---~L~~L~L~~N-~i~~l~~------ 195 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDN-QISDIVP--LAGLT---KLQNLYLSKN-HISDLRA------ 195 (291)
T ss_dssp GCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSS-CCCCCGG--GTTCT---TCCEEECCSS-CCCBCGG------
T ss_pred CCCCCCEEEccCCcCCcc--hh-hccCCCCCEEEccCC-ccccchh--hcCCC---ccCEEECCCC-cCCCChh------
Confidence 789999999999987764 23 346899999999999 7776432 44454 5999999997 4554311
Q ss_pred hhcCCCCCccEEeeeCCCCCc
Q 042559 418 VLTGDFKFLRHLDISNREGLA 438 (547)
Q Consensus 418 ~l~~~~~~L~~L~Ls~c~~l~ 438 (547)
...+++|+.|++++|+...
T Consensus 196 --l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 196 --LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GTTCTTCSEEEEEEEEEEC
T ss_pred --hccCCCCCEEECcCCcccC
Confidence 2478999999999986443
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.73 E-value=7.5e-10 Score=104.29 Aligned_cols=43 Identities=7% Similarity=-0.063 Sum_probs=22.1
Q ss_pred CCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcc
Q 042559 422 DFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFI 478 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~ 478 (547)
.+++|++|++++|+.. ..|++++.+.+.... +.+.+|...+.+
T Consensus 146 ~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~-------~~g~ip~~~~~l 188 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINK-------HSGVVRNSAGSV 188 (208)
T ss_dssp TCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHH-------CTTTBBCTTSSB
T ss_pred cCCCccEEEecCCCee-------cCCCCHHHHHHHHHh-------CCceeeccCccc
Confidence 4566666666666432 235555555444443 334555544433
No 93
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.73 E-value=1e-09 Score=111.24 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=43.2
Q ss_pred CCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCcccc
Q 042559 422 DFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEISLPS 496 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~~~~ 496 (547)
.+++|++|++++|....-.+..+..+++|+.+.+..+. + ..+|...+.+..+..++...|....+|.
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-------l-~~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-------L-SRVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-------C-CBCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-------C-eecChhhhcCccCCEEECCCCCCCccCh
Confidence 56777777777775444444566777777777666553 1 2567666777777778887775434443
No 94
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.73 E-value=1.7e-09 Score=98.15 Aligned_cols=132 Identities=22% Similarity=0.163 Sum_probs=81.6
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|+.|++++|. +++..+......+++|++|++++|. ++.. .....+++|++|++++|. ++.. +. ...
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~-----~~~ 91 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENR-IFGG-LD-----MLA 91 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSC-CC-----HHH
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchH-HH-----HHH
Confidence 468888888774 4433344444567788888888874 3322 222567778888888775 3221 22 355
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHH---HHHHcCCCCCCccEEeeeCCC
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFL---RNLGSGTGGNLLEVLILRDCM 404 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l---~~L~~~~~l~~L~~L~Ls~C~ 404 (547)
.++++|++|++++|.+++.........+++|++|++++| .+++... ..+..+++ |++|++++|.
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~---L~~L~l~~n~ 158 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQ---LTYLDGYDRE 158 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSS---CCEETTEETT
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCcc---CcEecCCCCC
Confidence 667888888888887766322122345788888888887 5654332 23444444 8888888764
No 95
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.73 E-value=3.2e-08 Score=106.37 Aligned_cols=202 Identities=12% Similarity=0.037 Sum_probs=124.7
Q ss_pred CCCccEEEEeCCCC-CCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 256 GSLLRRLHLYNIER-MDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 256 ~~~L~~L~L~~c~~-lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
.++|+.++++++.. +....+..+.. .++|+.|+++++....... ...+++|++|++++|. +++... .
T Consensus 275 l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~Ls~n~-l~~~~~------~ 342 (520)
T 2z7x_B 275 LKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLC----PSKISPFLHLDFSNNL-LTDTVF------E 342 (520)
T ss_dssp CCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSCCCCCCC----CSSCCCCCEEECCSSC-CCTTTT------T
T ss_pred CceeEeccccccceecchhhhhcccc-cCceeEEEcCCCccccccc----hhhCCcccEEEeECCc-cChhhh------h
Confidence 34577777776643 11123333322 2568888888874322110 1467889999998886 333221 1
Q ss_pred HhcCCCCcceEEeeccCCCHH-HHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHH
Q 042559 335 FVNNCPNLTSMALRGFKLPDY-KIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVAR 413 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~-~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~ 413 (547)
.+..+++|++|++++|.+++- .+......+++|++|++++| .+++..... .+..+++|++|++++|. ++....
T Consensus 343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~--~~~~l~~L~~L~Ls~N~-l~~~~~-- 416 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKG--DCSWTKSLLSLNMSSNI-LTDTIF-- 416 (520)
T ss_dssp TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGC--SCCCCTTCCEEECCSSC-CCGGGG--
T ss_pred hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccc--hhccCccCCEEECcCCC-CCcchh--
Confidence 456788999999999888762 23333456889999999988 666532211 13334569999999864 432211
Q ss_pred HHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCC-CCcccccccccccccc
Q 042559 414 FLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSE-GSFIDIEQMVDSEFNS 490 (547)
Q Consensus 414 ~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~-~~~~~~~~~l~~~~n~ 490 (547)
..-.++|+.|++++|.. +..+..+..+++|+.+.+..+. +. .+|.. ...+..+..++...|.
T Consensus 417 ------~~l~~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~L~~N~-------l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 417 ------RCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQ-------LK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ------GSCCTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSC-------CC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ------hhhcccCCEEECCCCcc-cccchhhhcCCCCCEEECCCCc-------CC-ccCHHHhccCCcccEEECcCCC
Confidence 11126899999998854 4656666688888888776654 22 45655 5566677777777774
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.72 E-value=9.9e-09 Score=102.91 Aligned_cols=194 Identities=15% Similarity=0.038 Sum_probs=129.5
Q ss_pred CCccEEEEecCCCCCHHHHHHHHh--cCCCccEEEecCCCCCCCCcCCCcchHHHh-cCCCCcceEEeeccCCCHH----
Q 042559 283 PSLLDLEIVGLHVELRQTLMSVSM--SCPLLERLFFESSKTGRDDSLKSPTCVDFV-NNCPNLTSMALRGFKLPDY---- 355 (547)
Q Consensus 283 ~~L~~L~Ls~c~~i~~~~l~~l~~--~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~-~~~~~L~~L~L~~~~ltd~---- 355 (547)
..++.|.+.++ .+++..+..+.. .+++|++|++++|. ++...... +. ..+++|++|++++|.+++.
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-----~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPL-----PLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCC-----SSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhh-----hhhccCCCCCEEEeecccccchhhhh
Confidence 35889999988 566766554433 34779999999986 33222211 22 6789999999999988752
Q ss_pred HHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCC
Q 042559 356 KIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNRE 435 (547)
Q Consensus 356 ~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~ 435 (547)
....+. .+++|++|+|++| .++......+. ++++|++|+|++|...++.++.. ....+.+++|++|++++|.
T Consensus 137 ~~~~~~-~~~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~---~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 137 AELQQW-LKPGLKVLSIAQA-HSPAFSCEQVR---AFPALTSLDLSDNPGLGERGLMA---ALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp HHHHTT-BCSCCCEEEEECC-SSCCCCTTSCC---CCTTCCEEECCSCTTCHHHHHHT---TSCTTSSCCCCSCBCCSSC
T ss_pred HHHHhh-hccCCCEEEeeCC-CcchhhHHHhc---cCCCCCEEECCCCCCccchhhhH---HHhhhcCCCCCEEECCCCC
Confidence 122333 6899999999999 77654333333 34469999999976544433311 1112478999999999996
Q ss_pred CCcc--chh-hhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcc---cccccccccccccCcccccc
Q 042559 436 GLAS--EGD-WYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFI---DIEQMVDSEFNSEISLPSQL 498 (547)
Q Consensus 436 ~l~~--~~~-~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~---~~~~~l~~~~n~~~~~~~~~ 498 (547)
...- .+. .+..+++|+.+.+..+. +.+..|...+.+ +.+..+++..|..-.+|..+
T Consensus 209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~-------l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~ 270 (310)
T 4glp_A 209 METPTGVCAALAAAGVQPHSLDLSHNS-------LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL 270 (310)
T ss_dssp CCCHHHHHHHHHHHTCCCSSEECTTSC-------CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC
T ss_pred CCchHHHHHHHHhcCCCCCEEECCCCC-------CCccchhhHHhccCcCcCCEEECCCCCCCchhhhh
Confidence 5321 122 24788999999888776 434445544443 57888899888755666654
No 97
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.72 E-value=5e-10 Score=121.73 Aligned_cols=135 Identities=13% Similarity=0.031 Sum_probs=64.7
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHH-HHHHcCCCCCCccEEeeeCCCCCCHHHHHHH
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFL-RNLGSGTGGNLLEVLILRDCMHLKEVEVARF 414 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l-~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~ 414 (547)
...+++|++|++++|.++..... ...+++|++|++++| .+++... ..+. ++++|++|++++|...... .
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~---~l~~L~~L~l~~n~l~~~~-~--- 438 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHS-NLKQMSEFSVFL---SLRNLIYLDISHTHTRVAF-N--- 438 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTS-EEESCTTSCTTT---TCTTCCEEECTTSCCEECC-T---
T ss_pred ccccCccCEEECCCCcccccccc--ccccCCCCEEEccCC-ccccccchhhhh---cCCCCCEEeCcCCcccccc-h---
Confidence 34455555555555543321111 223555666666555 3332211 1112 2233666666665321100 0
Q ss_pred HHHhhcCCCCCccEEeeeCCCCCc-cchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 415 LTAVLTGDFKFLRHLDISNREGLA-SEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 415 l~~~l~~~~~~L~~L~Ls~c~~l~-~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
...+.+++|++|++++|.... ..+..+..+++|+.+.+.... +.+..|...+.++.+..++...|.
T Consensus 439 ---~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 439 ---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-------LEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp ---TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSC
T ss_pred ---hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-------cccCChhhhhcccCCCEEeCCCCc
Confidence 011246666666666665432 244555666666666655543 333345555566666667776664
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.72 E-value=2.5e-09 Score=103.89 Aligned_cols=161 Identities=14% Similarity=0.049 Sum_probs=105.9
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
+++|+.|+|+++.. +.. ....+..+++|++|+|+++. ++.... .....+++|++|++++|. ++.... ..
T Consensus 34 ~~~l~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~------~~ 102 (251)
T 3m19_A 34 PADTEKLDLQSTGL-ATL-SDATFRGLTKLTWLNLDYNQ-LQTLSA-GVFDDLTELGTLGLANNQ-LASLPL------GV 102 (251)
T ss_dssp CTTCCEEECTTSCC-CCC-CTTTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC-CCCCCT------TT
T ss_pred CCCCCEEEccCCCc-Ccc-CHhHhcCcccCCEEECCCCc-CCccCH-hHhccCCcCCEEECCCCc-ccccCh------hH
Confidence 35799999999854 221 11234578999999999873 322110 112678899999999886 332221 24
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHH
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFL 415 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l 415 (547)
...+++|++|++++|.++.... .....+++|++|+|++| .++......+..+ ++|++|+|+++. ++....
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l---~~L~~L~L~~N~-l~~~~~---- 172 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTN-QLQSIPAGAFDKL---TNLQTLSLSTNQ-LQSVPH---- 172 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTC---TTCCEEECCSSC-CSCCCT----
T ss_pred hcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCC-cCCccCHHHcCcC---cCCCEEECCCCc-CCccCH----
Confidence 5678999999999997764322 22345899999999998 7774333233334 459999999863 432211
Q ss_pred HHhhcCCCCCccEEeeeCCCCCcc
Q 042559 416 TAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 416 ~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
.....+++|++|+|++|+...+
T Consensus 173 --~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 --GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp --TTTTTCTTCCEEECCSCCBCTT
T ss_pred --HHHhCCCCCCEEEeeCCceeCC
Confidence 0113688999999999976544
No 99
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.71 E-value=6.9e-09 Score=92.11 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=92.0
Q ss_pred CCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHH
Q 042559 308 CPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLG 387 (547)
Q Consensus 308 ~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~ 387 (547)
.++|+.|++++|. +++..+.. .+..+++|++|++++|.+++. .....+++|++|++++| .+++.....+.
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~-----~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEG-----LTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN-RVSGGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCS-----CCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS-CCCSCTHHHHH
T ss_pred CccCeEEEccCCc-CChhHHHH-----HHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC-cccchHHHHhh
Confidence 4679999999885 44333432 557789999999999988765 33346899999999999 78765444555
Q ss_pred cCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccch---hhhccCCCCCccch
Q 042559 388 SGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASEG---DWYDRCFNSRIIPL 455 (547)
Q Consensus 388 ~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~---~~l~~c~~L~~l~l 455 (547)
.+++ |++|++++|. +++..... ..+.+++|++|++++|....... ..+..+++|+.+.+
T Consensus 86 ~l~~---L~~L~ls~N~-i~~~~~~~-----~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 86 KCPN---LTHLNLSGNK-IKDLSTIE-----PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HCTT---CCEEECTTSC-CCSHHHHG-----GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hCCC---CCEEECCCCc-CCChHHHH-----HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5665 9999999975 66543211 12368999999999995433332 35788888877654
No 100
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.70 E-value=2.4e-09 Score=108.44 Aligned_cols=174 Identities=13% Similarity=0.050 Sum_probs=97.1
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|++|+|++|.. +. +.. ...++|++|+++++. ++... .....++++|++|++++|. ++...+.. ...
T Consensus 102 ~~L~~L~L~~n~l-~~--l~~--~~~~~L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~----~~~ 169 (332)
T 2ft3_A 102 RKLQKLYISKNHL-VE--IPP--NLPSSLVELRIHDNR-IRKVP-KGVFSGLRNMNCIEMGGNP-LENSGFEP----GAF 169 (332)
T ss_dssp TTCCEEECCSSCC-CS--CCS--SCCTTCCEEECCSSC-CCCCC-SGGGSSCSSCCEEECCSCC-CBGGGSCT----TSS
T ss_pred CCCCEEECCCCcC-Cc--cCc--cccccCCEEECCCCc-cCccC-HhHhCCCccCCEEECCCCc-cccCCCCc----ccc
Confidence 3677777776632 21 111 112567777776653 21110 0011456777777777664 22111110 122
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+ +|++|++++|.++.-.. ...++|++|++++| .+++.....+..++ +|++|+|++|. ++.... .
T Consensus 170 ~~l-~L~~L~l~~n~l~~l~~----~~~~~L~~L~l~~n-~i~~~~~~~l~~l~---~L~~L~L~~N~-l~~~~~-~--- 235 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTGIPK----DLPETLNELHLDHN-KIQAIELEDLLRYS---KLYRLGLGHNQ-IRMIEN-G--- 235 (332)
T ss_dssp CSC-CCSCCBCCSSBCSSCCS----SSCSSCSCCBCCSS-CCCCCCTTSSTTCT---TCSCCBCCSSC-CCCCCT-T---
T ss_pred cCC-ccCEEECcCCCCCccCc----cccCCCCEEECCCC-cCCccCHHHhcCCC---CCCEEECCCCc-CCcCCh-h---
Confidence 223 67777777765543110 11367888888887 66654333344444 59999999864 332211 0
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhh
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVS 459 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~ 459 (547)
..+.+++|++|++++|.. +..+..+..+++|+.+.+..+.
T Consensus 236 --~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 236 --SLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp --GGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEECCSSC
T ss_pred --HhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEECCCCC
Confidence 013578999999999854 4666678888999888776654
No 101
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.70 E-value=3.1e-08 Score=107.15 Aligned_cols=196 Identities=15% Similarity=0.055 Sum_probs=100.9
Q ss_pred CCccEEEEeCCCCCCHHHHH-HHHhcCCCccEEEEecCCCCCHHHHHH--HHhcCCCccEEEecCCCCCCCCcCCCcchH
Q 042559 257 SLLRRLHLYNIERMDNASLS-MALSACPSLLDLEIVGLHVELRQTLMS--VSMSCPLLERLFFESSKTGRDDSLKSPTCV 333 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~-~l~~~~~~L~~L~Ls~c~~i~~~~l~~--l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~ 333 (547)
++|+.|++++|. ++. +. .+...+++|++|+++++ .++...... ....+++|++|++++|. ++.... ..
T Consensus 310 ~~L~~L~l~~n~-l~~--ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~ 380 (549)
T 2z81_A 310 EKVKRITVENSK-VFL--VPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQK----TG 380 (549)
T ss_dssp TTCCEEEEESSC-CCC--CCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHH----HH
T ss_pred ccceEEEeccCc-ccc--CCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCc-cccccc----ch
Confidence 367777777764 321 22 23345777777777776 344433211 12456777777777764 221100 01
Q ss_pred HHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHH
Q 042559 334 DFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVAR 413 (547)
Q Consensus 334 ~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~ 413 (547)
.....+++|++|++++|.++. +......+++|++|++++| .++. +... -.++|++|+|++|. ++..
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~~L~~L~Ls~N-~l~~-----l~~~-~~~~L~~L~Ls~N~-l~~~---- 446 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFHP--MPDSCQWPEKMRFLNLSST-GIRV-----VKTC-IPQTLEVLDVSNNN-LDSF---- 446 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCCC--CCSCCCCCTTCCEEECTTS-CCSC-----CCTT-SCTTCSEEECCSSC-CSCC----
T ss_pred hhhhcCCCCCEEECCCCCCcc--CChhhcccccccEEECCCC-Cccc-----ccch-hcCCceEEECCCCC-hhhh----
Confidence 235567777777777776652 1112234567777777776 4442 1110 01247777777653 3321
Q ss_pred HHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 414 FLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 414 ~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
.+.+++|++|+|++|.. +..+. ...+++|+.+.+..+. +.+..|.....+..++.++...|.
T Consensus 447 ------~~~l~~L~~L~Ls~N~l-~~ip~-~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 447 ------SLFLPRLQELYISRNKL-KTLPD-ASLFPVLLVMKISRNQ-------LKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp ------CCCCTTCCEEECCSSCC-SSCCC-GGGCTTCCEEECCSSC-------CCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ------cccCChhcEEECCCCcc-CcCCC-cccCccCCEEecCCCc-------cCCcCHHHHhcCcccCEEEecCCC
Confidence 12566677777777643 33322 3455666666555543 222223234455555566666663
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.70 E-value=2.5e-10 Score=122.35 Aligned_cols=200 Identities=13% Similarity=0.016 Sum_probs=137.8
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|++|+|++|.. +.. ....+..+++|++|+|++|.-..... ...+++|++|++++|. ++. +
T Consensus 34 ~~L~~L~Ls~n~l-~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~-----------l 95 (487)
T 3oja_A 34 WNVKELDLSGNPL-SQI-SAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQE-----------L 95 (487)
T ss_dssp GGCCEEECCSSCC-CCC-CGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSE-EEE-----------E
T ss_pred CCccEEEeeCCcC-CCC-CHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCc-CCC-----------C
Confidence 3799999999854 321 12334688999999999984321112 3678999999999885 221 2
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
...++|++|++++|.++.... ..+++|++|+|++| .+++.....++.+++ |++|+|+++. ++......
T Consensus 96 ~~~~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~---L~~L~Ls~N~-l~~~~~~~--- 163 (487)
T 3oja_A 96 LVGPSIETLHAANNNISRVSC----SRGQGKKNIYLANN-KITMLRDLDEGCRSR---VQYLDLKLNE-IDTVNFAE--- 163 (487)
T ss_dssp EECTTCCEEECCSSCCCCEEE----CCCSSCEEEECCSS-CCCSGGGBCGGGGSS---EEEEECTTSC-CCEEEGGG---
T ss_pred CCCCCcCEEECcCCcCCCCCc----cccCCCCEEECCCC-CCCCCCchhhcCCCC---CCEEECCCCC-CCCcChHH---
Confidence 234899999999998775432 34789999999999 887754444555554 9999999864 44322211
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCcccc
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEISLPS 496 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~~~~ 496 (547)
+.+.+++|+.|+|++|...+. .....+++|+.+.+..+. +. .+|+..+.+..+..+++..|....+|.
T Consensus 164 --l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~-------l~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 164 --LAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNK-------LA-FMGPEFQSAAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp --GGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSC-------CC-EECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred --HhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCC-------CC-CCCHhHcCCCCccEEEecCCcCcccch
Confidence 122578999999999975443 223458888888877664 22 355566777888889999987555565
Q ss_pred cc
Q 042559 497 QL 498 (547)
Q Consensus 497 ~~ 498 (547)
.+
T Consensus 232 ~l 233 (487)
T 3oja_A 232 AL 233 (487)
T ss_dssp TC
T ss_pred hh
Confidence 43
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.64 E-value=4.4e-09 Score=98.94 Aligned_cols=164 Identities=12% Similarity=0.003 Sum_probs=109.1
Q ss_pred CCCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 255 AGSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 255 ~~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
..++|++|+++++. ++.. .......+++|++|+++++. ++... ......+++|++|++++|. ++.... .
T Consensus 26 ~~~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~------~ 94 (208)
T 2o6s_A 26 IPAQTTYLDLETNS-LKSL-PNGVFDELTSLTQLYLGGNK-LQSLP-NGVFNKLTSLTYLNLSTNQ-LQSLPN------G 94 (208)
T ss_dssp CCTTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT------T
T ss_pred CCCCCcEEEcCCCc-cCcC-ChhhhcccccCcEEECCCCc-cCccC-hhhcCCCCCcCEEECCCCc-CCccCH------h
Confidence 34589999999984 3321 12234678999999999873 32111 1112578999999999885 332211 2
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHH
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARF 414 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~ 414 (547)
....+++|++|++++|.++..... ....+++|++|+|++| .+++.....+..+ ++|++|+|++++.
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l---~~L~~L~l~~N~~--------- 160 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQN-QLKSVPDGVFDRL---TSLQYIWLHDNPW--------- 160 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTC---TTCCEEECCSCCB---------
T ss_pred HhcCccCCCEEEcCCCcCcccCHh-HhccCCcCCEEECCCC-ccceeCHHHhccC---CCccEEEecCCCe---------
Confidence 456789999999999877643222 2345899999999998 7764322223334 4599999998742
Q ss_pred HHHhhcCCCCCccEEeeeCCCCCccchhhhccCC
Q 042559 415 LTAVLTGDFKFLRHLDISNREGLASEGDWYDRCF 448 (547)
Q Consensus 415 l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~ 448 (547)
.+.+++|+.|+++.|...+..+.+++.++
T Consensus 161 -----~~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 161 -----DCTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp -----CCCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred -----ecCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 23678888888888876666666555443
No 104
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.64 E-value=6.5e-09 Score=102.29 Aligned_cols=203 Identities=14% Similarity=0.068 Sum_probs=123.5
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
+++|++|+|+++. ++... ......+++|++|+++++. ++.... ....++++|++|++++|. ++.... ..
T Consensus 27 ~~~l~~L~ls~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~------~~ 95 (276)
T 2z62_A 27 PFSTKNLDLSFNP-LRHLG-SYSFFSFPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNP-IQSLAL------GA 95 (276)
T ss_dssp CTTCCEEECTTCC-CCEEC-TTTTTTCTTCSEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCC-CCEECT------TT
T ss_pred CCCccEEECCCCc-ccccC-HhHhccccCCcEEECCCCc-CCccCH-HHccCCcCCCEEECCCCc-cCccCh------hh
Confidence 4579999999984 33211 1134578999999999873 322110 012678899999999886 332221 24
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHH-HHHHHcCCCCCCccEEeeeCCCCCCHH---HH
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAF-LRNLGSGTGGNLLEVLILRDCMHLKEV---EV 411 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~-l~~L~~~~~l~~L~~L~Ls~C~~L~~~---~l 411 (547)
+..+++|++|++.+|.++...... ...+++|++|++++| .+++.. ...++.+++ |++|++++|. ++.. .+
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~---L~~L~Ls~N~-l~~~~~~~~ 169 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTN---LEHLDLSSNK-IQSIYCTDL 169 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTT---CCEEECCSSC-CCEECGGGG
T ss_pred hcCCccccEEECCCCCccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCC---CCEEECCCCC-CCcCCHHHh
Confidence 567899999999998765432222 335889999999998 665422 334555554 9999999864 3322 22
Q ss_pred HHHHHHhhcCCCCCcc-EEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCC-CCccccccccccccc
Q 042559 412 ARFLTAVLTGDFKFLR-HLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSE-GSFIDIEQMVDSEFN 489 (547)
Q Consensus 412 ~~~l~~~l~~~~~~L~-~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~-~~~~~~~~~l~~~~n 489 (547)
.. + ..++.|. .|++++|....-. .......+|+.+.+.... + ..+|.. ...+..+..++...|
T Consensus 170 ~~-l-----~~L~~l~l~L~ls~n~l~~~~-~~~~~~~~L~~L~L~~n~-------l-~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 170 RV-L-----HQMPLLNLSLDLSLNPMNFIQ-PGAFKEIRLKELALDTNQ-------L-KSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp HH-H-----HTCTTCCEEEECCSSCCCEEC-TTSSCSCCEEEEECCSSC-------C-SCCCTTTTTTCCSCCEEECCSS
T ss_pred hh-h-----hhccccceeeecCCCcccccC-ccccCCCcccEEECCCCc-------e-eecCHhHhcccccccEEEccCC
Confidence 11 1 1344444 8999988654333 222233466666665443 1 234443 355667777888777
Q ss_pred c
Q 042559 490 S 490 (547)
Q Consensus 490 ~ 490 (547)
.
T Consensus 235 ~ 235 (276)
T 2z62_A 235 P 235 (276)
T ss_dssp C
T ss_pred c
Confidence 4
No 105
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.62 E-value=2.8e-09 Score=106.12 Aligned_cols=170 Identities=16% Similarity=0.079 Sum_probs=92.1
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|+.|+|++|.. +.. ....+..+++|++|+|+++. ++.... ...+++|++|++++|. ++ .+.. ..
T Consensus 31 ~~l~~L~L~~N~l-~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~Ls~N~-l~--~l~~-----~~ 96 (290)
T 1p9a_G 31 KDTTILHLSENLL-YTF-SLATLMPYTRLTQLNLDRAE-LTKLQV---DGTLPVLGTLDLSHNQ-LQ--SLPL-----LG 96 (290)
T ss_dssp TTCCEEECTTSCC-SEE-EGGGGTTCTTCCEEECTTSC-CCEEEC---CSCCTTCCEEECCSSC-CS--SCCC-----CT
T ss_pred CCCCEEEcCCCcC-Ccc-CHHHhhcCCCCCEEECCCCc-cCcccC---CCCCCcCCEEECCCCc-CC--cCch-----hh
Confidence 4678888877743 321 11233567778888887763 322111 0456778888887765 22 2221 34
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|++|++++|.++...... ..++++|++|+|++| .++......+. .+++|++|+|+++. ++....
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N~-l~~l~~----- 165 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKGN-ELKTLPPGLLT---PTPKLEKLSLANNN-LTELPA----- 165 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSST-TTTCTTCCEEECTTS-CCCCCCTTTTT---TCTTCCEEECTTSC-CSCCCT-----
T ss_pred ccCCCCCEEECCCCcCcccCHHH-HcCCCCCCEEECCCC-CCCccChhhcc---cccCCCEEECCCCc-CCccCH-----
Confidence 56777778887777665322112 234677777877777 55532211122 23347777777653 332111
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCcc
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRII 453 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l 453 (547)
.....+++|++|+|++|.. +..+..+...++|+.+
T Consensus 166 -~~~~~l~~L~~L~L~~N~l-~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 166 -GLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFA 200 (290)
T ss_dssp -TTTTTCTTCCEEECCSSCC-CCCCTTTTTTCCCSEE
T ss_pred -HHhcCcCCCCEEECCCCcC-CccChhhcccccCCeE
Confidence 0113567777777777753 3444444444555544
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.62 E-value=1.2e-08 Score=98.98 Aligned_cols=173 Identities=12% Similarity=0.078 Sum_probs=111.1
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCC--CCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHV--ELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~--i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
..+.+++.++.. +. +.. ...++|+.|+|+++.- +....+ .++++|++|++++|. ++.... ..
T Consensus 15 ~~~~l~~~~~~l-~~--~p~--~~~~~l~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~------~~ 78 (251)
T 3m19_A 15 GKKEVDCQGKSL-DS--VPS--GIPADTEKLDLQSTGLATLSDATF----RGLTKLTWLNLDYNQ-LQTLSA------GV 78 (251)
T ss_dssp GGTEEECTTCCC-SS--CCS--CCCTTCCEEECTTSCCCCCCTTTT----TTCTTCCEEECTTSC-CCCCCT------TT
T ss_pred CCeEEecCCCCc-cc--cCC--CCCCCCCEEEccCCCcCccCHhHh----cCcccCCEEECCCCc-CCccCH------hH
Confidence 356677766532 21 111 1235799999998742 222223 678999999999985 333221 24
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHH
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFL 415 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l 415 (547)
+..+++|++|++++|.++..... ....+++|++|+|++| .++......+. .+++|++|+|+++ .++....
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~---- 148 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLG-VFDHLTQLDKLYLGGN-QLKSLPSGVFD---RLTKLKELRLNTN-QLQSIPA---- 148 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCT----
T ss_pred hccCCcCCEEECCCCcccccChh-HhcccCCCCEEEcCCC-cCCCcChhHhc---cCCcccEEECcCC-cCCccCH----
Confidence 56789999999999977643322 2346899999999998 77643222223 3445999999986 4443211
Q ss_pred HHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhh
Q 042559 416 TAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEV 458 (547)
Q Consensus 416 ~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l 458 (547)
...+.+++|++|+|++|...+-....+..+++|+.+.+..+
T Consensus 149 --~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 149 --GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp --TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred --HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 01236789999999999665445556777888877765544
No 107
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.61 E-value=5.6e-07 Score=83.56 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=85.9
Q ss_pred HHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccC
Q 042559 272 NASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFK 351 (547)
Q Consensus 272 ~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ 351 (547)
++.+..+..+-+.|++|+|+++..+.+.+...++.. +.....|++|+|++|.
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~a----------------------------L~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEA----------------------------ACNSKHIEKFSLANTA 81 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHH----------------------------HTTCSCCCEEECTTSC
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHH----------------------------HhhCCCcCEEEccCCC
Confidence 445666667777788888877657778877766653 2234557777777777
Q ss_pred CCHHHHHHHHh---cCCCCcEEeccCCCCCCHHHHHHHHc-CCCCCCccEEeeeCCC--CCCHHHHHHHHHHhhcCCCCC
Q 042559 352 LPDYKIRILLK---GFRKLKYVDFSTSYSITGAFLRNLGS-GTGGNLLEVLILRDCM--HLKEVEVARFLTAVLTGDFKF 425 (547)
Q Consensus 352 ltd~~l~~l~~---~~~~L~~L~Ls~c~~lt~~~l~~L~~-~~~l~~L~~L~Ls~C~--~L~~~~l~~~l~~~l~~~~~~ 425 (547)
++|.+...|++ ..+.|++|+|+.| .|++.+..+|+. +....+|++|+|+++. .+.+.+...+... +. .-+.
T Consensus 82 igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~-~N~t 158 (197)
T 1pgv_A 82 ISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IE-ENES 158 (197)
T ss_dssp CBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HH-HCSS
T ss_pred CChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HH-hCCC
Confidence 77776655543 3466788888777 778777777776 5555668888887653 4666554222222 22 2456
Q ss_pred ccEEeeeCC
Q 042559 426 LRHLDISNR 434 (547)
Q Consensus 426 L~~L~Ls~c 434 (547)
|+.|+++.+
T Consensus 159 L~~L~l~~~ 167 (197)
T 1pgv_A 159 LLRVGISFA 167 (197)
T ss_dssp CCEEECCCC
T ss_pred cCeEeccCC
Confidence 777777654
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.60 E-value=6.5e-09 Score=100.04 Aligned_cols=188 Identities=15% Similarity=0.110 Sum_probs=117.4
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeec-cCCCHHHHHHHH
Q 042559 283 PSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRG-FKLPDYKIRILL 361 (547)
Q Consensus 283 ~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~-~~ltd~~l~~l~ 361 (547)
++|++|+++++. ++...- ....++++|++|++++|..++.... .....+++|++|++++ +.++.-... ..
T Consensus 31 ~~l~~L~l~~n~-l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~------~~f~~l~~L~~L~l~~~n~l~~i~~~-~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPS-HAFSNLPNISRIYVSIDVTLQQLES------HSFYNLSKVTHIEIRNTRNLTYIDPD-AL 101 (239)
T ss_dssp TTCCEEEEESCC-CSEECT-TTTTTCTTCCEEEEECCSSCCEECT------TTEESCTTCCEEEEEEETTCCEECTT-SE
T ss_pred CcccEEEEeCCc-ceEECH-HHccCCCCCcEEeCCCCCCcceeCH------hHcCCCcCCcEEECCCCCCeeEcCHH-Hh
Confidence 479999999974 322110 0126789999999999864543322 1456789999999998 777643222 23
Q ss_pred hcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCcc-EEeeeCCCCCccc
Q 042559 362 KGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLR-HLDISNREGLASE 440 (547)
Q Consensus 362 ~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~-~L~Ls~c~~l~~~ 440 (547)
.++++|++|++++| .++. +..+..++++..|++|++++++.++.... ...+.+++|+ +|++++|... ..
T Consensus 102 ~~l~~L~~L~l~~n-~l~~--lp~~~~l~~L~~L~~L~l~~N~~l~~i~~------~~~~~l~~L~~~L~l~~n~l~-~i 171 (239)
T 2xwt_C 102 KELPLLKFLGIFNT-GLKM--FPDLTKVYSTDIFFILEITDNPYMTSIPV------NAFQGLCNETLTLKLYNNGFT-SV 171 (239)
T ss_dssp ECCTTCCEEEEEEE-CCCS--CCCCTTCCBCCSEEEEEEESCTTCCEECT------TTTTTTBSSEEEEECCSCCCC-EE
T ss_pred CCCCCCCEEeCCCC-CCcc--ccccccccccccccEEECCCCcchhhcCc------ccccchhcceeEEEcCCCCCc-cc
Confidence 46899999999998 6665 22244444433344999999856654322 0123688999 9999998654 43
Q ss_pred hhhhccCCCCCccchhhhhhcCCCcEEEeecCCC-CCcc-cccccccccccccCcccc
Q 042559 441 GDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSE-GSFI-DIEQMVDSEFNSEISLPS 496 (547)
Q Consensus 441 ~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~-~~~~-~~~~~l~~~~n~~~~~~~ 496 (547)
+......++|+.+.+.... .+ ..+|.. ...+ ..+..++...|....+|.
T Consensus 172 ~~~~~~~~~L~~L~L~~n~----~l---~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 172 QGYAFNGTKLDAVYLNKNK----YL---TVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp CTTTTTTCEEEEEECTTCT----TC---CEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred CHhhcCCCCCCEEEcCCCC----Cc---ccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 3322222667777665542 12 234432 3455 667778888876444443
No 109
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.55 E-value=1.2e-08 Score=101.56 Aligned_cols=196 Identities=17% Similarity=0.078 Sum_probs=126.4
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|+.+++.++. ++. +.. ...++|+.|+|+++. ++.... .....+++|++|++++|. ++. +. ..
T Consensus 10 ~~l~~l~~~~~~-l~~--ip~--~~~~~l~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~--~~------~~ 73 (290)
T 1p9a_G 10 ASHLEVNCDKRN-LTA--LPP--DLPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLNLDRAE-LTK--LQ------VD 73 (290)
T ss_dssp TTCCEEECTTSC-CSS--CCS--CCCTTCCEEECTTSC-CSEEEG-GGGTTCTTCCEEECTTSC-CCE--EE------CC
T ss_pred CCccEEECCCCC-CCc--CCC--CCCCCCCEEEcCCCc-CCccCH-HHhhcCCCCCEEECCCCc-cCc--cc------CC
Confidence 468999988763 331 111 124689999999974 332111 112678999999999986 332 21 12
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|++|++++|.++. +......+++|++|++++| .++......+.. +++|++|+|+++. ++....
T Consensus 74 ~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~---l~~L~~L~L~~N~-l~~~~~----- 141 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFN-RLTSLPLGALRG---LGELQELYLKGNE-LKTLPP----- 141 (290)
T ss_dssp SCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSS-CCCCCCSSTTTT---CTTCCEEECTTSC-CCCCCT-----
T ss_pred CCCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCC-cCcccCHHHHcC---CCCCCEEECCCCC-CCccCh-----
Confidence 578999999999997762 2223356899999999999 776433223333 4459999999863 442211
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCccccccccccccc
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFN 489 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n 489 (547)
.....+++|+.|++++|....-..+.+..+++|+.+.+..+. + ..+|........+..+++..|
T Consensus 142 -~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-------l-~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 142 -GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-------L-YTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp -TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-------C-CCCCTTTTTTCCCSEEECCSC
T ss_pred -hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-------C-CccChhhcccccCCeEEeCCC
Confidence 112368899999999996544344556788899888776654 1 145555544445555666555
No 110
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.53 E-value=2e-07 Score=101.39 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=14.7
Q ss_pred CCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCC
Q 042559 339 CPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTS 375 (547)
Q Consensus 339 ~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c 375 (547)
+++|++|++++|.+++.....+ .++++|++|++++|
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N 387 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRN 387 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSS
T ss_pred CCCceEEECCCCccccchhhhh-cccCCCCEEECCCC
Confidence 4444444444444443221111 22444444444444
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.52 E-value=3.8e-08 Score=96.43 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=100.4
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|+.|++++|. +++ +. ....+++|++|+++++. ++...- ...+++|++|++++|. +++ +.. +.
T Consensus 42 ~L~~L~l~~n~-i~~--l~-~l~~l~~L~~L~L~~N~-i~~~~~---l~~l~~L~~L~L~~N~-l~~--l~~-----~~- 104 (263)
T 1xeu_A 42 GVQNFNGDNSN-IQS--LA-GMQFFTNLKELHLSHNQ-ISDLSP---LKDLTKLEELSVNRNR-LKN--LNG-----IP- 104 (263)
T ss_dssp TCSEEECTTSC-CCC--CT-TGGGCTTCCEEECCSSC-CCCCGG---GTTCSSCCEEECCSSC-CSC--CTT-----CC-
T ss_pred cCcEEECcCCC-ccc--ch-HHhhCCCCCEEECCCCc-cCCChh---hccCCCCCEEECCCCc-cCC--cCc-----cc-
Confidence 69999999884 442 22 24678999999999874 332211 3678999999999886 332 221 22
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHH
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTA 417 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~ 417 (547)
. ++|++|++++|.+++. .. ...+++|++|++++| .+++. ..+..+++ |++|+|++|. +++..
T Consensus 105 ~-~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~--~~l~~l~~---L~~L~L~~N~-i~~~~------- 166 (263)
T 1xeu_A 105 S-ACLSRLFLDNNELRDT--DS-LIHLKNLEILSIRNN-KLKSI--VMLGFLSK---LEVLDLHGNE-ITNTG------- 166 (263)
T ss_dssp C-SSCCEEECCSSCCSBS--GG-GTTCTTCCEEECTTS-CCCBC--GGGGGCTT---CCEEECTTSC-CCBCT-------
T ss_pred c-CcccEEEccCCccCCC--hh-hcCcccccEEECCCC-cCCCC--hHHccCCC---CCEEECCCCc-CcchH-------
Confidence 2 8899999999987763 23 346899999999998 77764 24555554 9999999864 44331
Q ss_pred hhcCCCCCccEEeeeCCCCCcc
Q 042559 418 VLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 418 ~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
....+++|+.|++++|+....
T Consensus 167 -~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 -GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TSTTCCCCCEEEEEEEEEECC
T ss_pred -HhccCCCCCEEeCCCCcccCC
Confidence 124688999999998865433
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.48 E-value=4.3e-08 Score=96.03 Aligned_cols=146 Identities=15% Similarity=0.137 Sum_probs=105.0
Q ss_pred hcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHH
Q 042559 280 SACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRI 359 (547)
Q Consensus 280 ~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~ 359 (547)
..+++|++|++++|.-..-.++ ..+++|++|++++|. +++ +. .+..+++|++|++++|.+++- ..
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l----~~l~~L~~L~L~~N~-i~~--~~------~l~~l~~L~~L~L~~N~l~~l--~~ 102 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGM----QFFTNLKELHLSHNQ-ISD--LS------PLKDLTKLEELSVNRNRLKNL--NG 102 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTG----GGCTTCCEEECCSSC-CCC--CG------GGTTCSSCCEEECCSSCCSCC--TT
T ss_pred hhcCcCcEEECcCCCcccchHH----hhCCCCCEEECCCCc-cCC--Ch------hhccCCCCCEEECCCCccCCc--Cc
Confidence 4578999999999843222233 678999999999986 332 11 156799999999999987652 22
Q ss_pred HHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 360 LLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 360 l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
+. . ++|++|++++| .+++. ..+..++ +|++|+|+++. +++... .+.+++|++|++++|.....
T Consensus 103 ~~-~-~~L~~L~L~~N-~l~~~--~~l~~l~---~L~~L~Ls~N~-i~~~~~--------l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 103 IP-S-ACLSRLFLDNN-ELRDT--DSLIHLK---NLEILSIRNNK-LKSIVM--------LGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CC-C-SSCCEEECCSS-CCSBS--GGGTTCT---TCCEEECTTSC-CCBCGG--------GGGCTTCCEEECTTSCCCBC
T ss_pred cc-c-CcccEEEccCC-ccCCC--hhhcCcc---cccEEECCCCc-CCCChH--------HccCCCCCEEECCCCcCcch
Confidence 22 2 89999999999 77763 3344444 59999999864 554321 13689999999999965443
Q ss_pred chhhhccCCCCCccchhhhh
Q 042559 440 EGDWYDRCFNSRIIPLKEVS 459 (547)
Q Consensus 440 ~~~~l~~c~~L~~l~l~~l~ 459 (547)
..+..+++|+.+.+....
T Consensus 166 --~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCc
Confidence 667888899888776554
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.47 E-value=2.3e-08 Score=91.53 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=17.1
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecC
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGL 293 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c 293 (547)
+|+.|++++|. ++. +..+....++|++|+++++
T Consensus 20 ~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~Ls~N 52 (176)
T 1a9n_A 20 RDRELDLRGYK-IPV--IENLGATLDQFDAIDFSDN 52 (176)
T ss_dssp SCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCSS
T ss_pred CceEEEeeCCC-Cch--hHHhhhcCCCCCEEECCCC
Confidence 57777777663 331 2223333445666666555
No 114
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.40 E-value=2.6e-08 Score=97.02 Aligned_cols=48 Identities=27% Similarity=0.474 Sum_probs=44.5
Q ss_pred CCCCCChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCccccccc
Q 042559 121 LAWPLPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYANIDLR 168 (547)
Q Consensus 121 ~~~~LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~~vdL~ 168 (547)
.++.||+||+++||+||+++|++++++|||+||.++.|+.+|+++-.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~r 51 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLR 51 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHS
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhc
Confidence 367899999999999999999999999999999999999999988554
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.38 E-value=2.8e-08 Score=101.97 Aligned_cols=162 Identities=15% Similarity=0.072 Sum_probs=102.2
Q ss_pred CCCCccEEEEeCCCCCCHHHHHHHHh-cCCCccEEEEecCCCCCH---HHHHHHHhcCCCccEEEecCCCCCCCCcCCCc
Q 042559 255 AGSLLRRLHLYNIERMDNASLSMALS-ACPSLLDLEIVGLHVELR---QTLMSVSMSCPLLERLFFESSKTGRDDSLKSP 330 (547)
Q Consensus 255 ~~~~L~~L~L~~c~~lt~~~L~~l~~-~~~~L~~L~Ls~c~~i~~---~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~ 330 (547)
.++.++.|+|+++. ++.-. ..... .+++|++|+|+++. ++. ..+ .++++|++|+|++|. ++....
T Consensus 37 ~~~~l~~L~Ls~N~-l~~l~-~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~----~~l~~L~~L~Ls~N~-l~~~~~--- 105 (361)
T 2xot_A 37 LPSYTALLDLSHNN-LSRLR-AEWTPTRLTNLHSLLLSHNH-LNFISSEAF----VPVPNLRYLDLSSNH-LHTLDE--- 105 (361)
T ss_dssp CCTTCSEEECCSSC-CCEEC-TTSSSSCCTTCCEEECCSSC-CCEECTTTT----TTCTTCCEEECCSSC-CCEECT---
T ss_pred CCCCCCEEECCCCC-CCccC-hhhhhhcccccCEEECCCCc-CCccChhhc----cCCCCCCEEECCCCc-CCcCCH---
Confidence 34569999999984 44211 11223 78999999999873 322 223 678999999999886 332211
Q ss_pred chHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHH
Q 042559 331 TCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVE 410 (547)
Q Consensus 331 ~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~ 410 (547)
..+..+++|+.|+|++|.++......+ .++++|++|+|++| .|+......+.....+++|++|+|+++ +++...
T Consensus 106 ---~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 106 ---FLFSDLQALEVLLLYNNHIVVVDRNAF-EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179 (361)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCC
T ss_pred ---HHhCCCcCCCEEECCCCcccEECHHHh-CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccC
Confidence 245678999999999998765332233 45899999999998 676422211211123445999999985 454433
Q ss_pred HHHHHHHhhcCCCCC--ccEEeeeCCCCCcc
Q 042559 411 VARFLTAVLTGDFKF--LRHLDISNREGLAS 439 (547)
Q Consensus 411 l~~~l~~~l~~~~~~--L~~L~Ls~c~~l~~ 439 (547)
... +. .++. |+.|+|++|+..-+
T Consensus 180 ~~~-~~-----~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 180 LTD-LQ-----KLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp HHH-HH-----HSCHHHHTTEECCSSCEECC
T ss_pred HHH-hh-----hccHhhcceEEecCCCccCC
Confidence 211 11 2344 47899999876544
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.35 E-value=4e-08 Score=93.49 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=55.3
Q ss_pred hcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHH
Q 042559 306 MSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRN 385 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~ 385 (547)
..+++|++|++++|. ++...- ..+..+++|++|+|++|.++...... ..++++|++|+|++| .++......
T Consensus 54 ~~l~~L~~L~L~~N~-i~~i~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~ 124 (220)
T 2v70_A 54 KKLPQLRKINFSNNK-ITDIEE------GAFEGASGVNEILLTSNRLENVQHKM-FKGLESLKTLMLRSN-RITCVGNDS 124 (220)
T ss_dssp GGCTTCCEEECCSSC-CCEECT------TTTTTCTTCCEEECCSSCCCCCCGGG-GTTCSSCCEEECTTS-CCCCBCTTS
T ss_pred ccCCCCCEEECCCCc-CCEECH------HHhCCCCCCCEEECCCCccCccCHhH-hcCCcCCCEEECCCC-cCCeECHhH
Confidence 345555555555543 221111 13344566666666666554322211 234566666666666 454332222
Q ss_pred HHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 386 LGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 386 L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
+..+ .+|++|+|+++. ++.... ...+.+++|+.|+|++|+...+
T Consensus 125 ~~~l---~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 125 FIGL---SSVRLLSLYDNQ-ITTVAP------GAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp STTC---TTCSEEECTTSC-CCCBCT------TTTTTCTTCCEEECCSCCEECS
T ss_pred cCCC---ccCCEEECCCCc-CCEECH------HHhcCCCCCCEEEecCcCCcCC
Confidence 2222 336667666642 322110 0013567777777777765544
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.34 E-value=1.1e-07 Score=90.99 Aligned_cols=90 Identities=18% Similarity=0.121 Sum_probs=42.3
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|+.|+|++|.++.... .....+++|++|+|++| .++. ....+..++ +|++|+|+++ .++....
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N-~l~~-lp~~~~~l~---~L~~L~L~~N-~l~~~~~----- 152 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCN-KLTE-LPRGIERLT---HLTHLALDQN-QLKSIPH----- 152 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCS-CCTTGGGCT---TCSEEECCSS-CCCCCCT-----
T ss_pred ccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCC-cccc-cCcccccCC---CCCEEECCCC-cCCccCH-----
Confidence 345555555555554442111 11223555666666655 4441 112222233 3666666654 2332111
Q ss_pred HhhcCCCCCccEEeeeCCCCCcc
Q 042559 417 AVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
.....+++|+.|++++|+...+
T Consensus 153 -~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 153 -GAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp -TTTTTCTTCCEEECTTSCBCTT
T ss_pred -HHHhCCCCCCEEEeeCCCccCC
Confidence 0113567777777777765443
No 118
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.32 E-value=1e-07 Score=104.76 Aligned_cols=57 Identities=18% Similarity=0.032 Sum_probs=29.8
Q ss_pred CCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 422 DFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
.+++|+.|+|++|. ++..+. .+++|+.+.+..+. +. .+|...+.+..+..++...|.
T Consensus 239 ~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~-------L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 239 LPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-------LT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-------CC-SCCGGGGGSCTTCEEECCSCC
T ss_pred CCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC-------CC-cCCHHHhhccccCEEEecCCC
Confidence 44566666666653 233222 34555555554432 11 455555666666667776664
No 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.32 E-value=9.9e-08 Score=104.88 Aligned_cols=62 Identities=16% Similarity=-0.007 Sum_probs=31.6
Q ss_pred CCCccEEeeeCCCCCccchhhhccCCCCCccchhhhhhcCCCcEEEeecCCCCCcccccccccccccccCccccccc
Q 042559 423 FKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNSEISLPSQLS 499 (547)
Q Consensus 423 ~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~~~~~~~~~~ 499 (547)
+++|+.|++++|.. +..+ ..+++|+.+.+..+. +..+|. .+..+..+++..|..-.+|..+.
T Consensus 220 ~~~L~~L~Ls~N~L-~~lp---~~l~~L~~L~Ls~N~--------L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~ 281 (622)
T 3g06_A 220 PSGLKELIVSGNRL-TSLP---VLPSELKELMVSGNR--------LTSLPM---LPSGLLSLSVYRNQLTRLPESLI 281 (622)
T ss_dssp CTTCCEEECCSSCC-SCCC---CCCTTCCEEECCSSC--------CSCCCC---CCTTCCEEECCSSCCCSCCGGGG
T ss_pred CCCCCEEEccCCcc-CcCC---CCCCcCcEEECCCCC--------CCcCCc---ccccCcEEeCCCCCCCcCCHHHh
Confidence 35566666666532 2222 234555555554432 113444 34455667777776555665543
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.31 E-value=7.1e-08 Score=91.74 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=40.5
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..+++|++|+|++|.++.-. ..+..++++|++|+|++| .++......+..++ +|++|+|+++. ++....
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~---~L~~L~L~~N~-l~~~~~----- 145 (220)
T 2v9t_B 77 QGLRSLNSLVLYGNKITELP-KSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLH---NLNLLSLYDNK-LQTIAK----- 145 (220)
T ss_dssp TTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT---TCCEEECCSSC-CSCCCT-----
T ss_pred hCCcCCCEEECCCCcCCccC-HhHccCCCCCCEEECCCC-CCCEeCHHHcCCCC---CCCEEECCCCc-CCEECH-----
Confidence 33455555555555443211 111223455555555555 44432222222222 36666666542 221110
Q ss_pred HhhcCCCCCccEEeeeCCCCCcc
Q 042559 417 AVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
...+.+++|+.|+|++|+...+
T Consensus 146 -~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 146 -GTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp -TTTTTCTTCCEEECCSSCEECS
T ss_pred -HHHhCCCCCCEEEeCCCCcCCC
Confidence 0012466777777777765443
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.30 E-value=1.2e-07 Score=86.57 Aligned_cols=133 Identities=12% Similarity=0.046 Sum_probs=83.7
Q ss_pred cCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHH
Q 042559 281 ACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRIL 360 (547)
Q Consensus 281 ~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l 360 (547)
.+++|++|++++|. ++. +..+....++|+.|++++|. ++.. . .+..+++|++|++++|.++.-. ..+
T Consensus 17 ~~~~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~--~------~l~~l~~L~~L~Ls~N~l~~~~-~~~ 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPV--IENLGATLDQFDAIDFSDNE-IRKL--D------GFPLLRRLKTLLVNNNRICRIG-EGL 83 (176)
T ss_dssp CTTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCSSC-CCEE--C------CCCCCSSCCEEECCSSCCCEEC-SCH
T ss_pred CcCCceEEEeeCCC-Cch--hHHhhhcCCCCCEEECCCCC-CCcc--c------ccccCCCCCEEECCCCcccccC-cch
Confidence 56788999998873 332 22233445589999998885 3321 1 4456888999999988776432 123
Q ss_pred HhcCCCCcEEeccCCCCCCHHH-HHHHHcCCCCCCccEEeeeCCCCCCHHHHH--HHHHHhhcCCCCCccEEeeeCCCC
Q 042559 361 LKGFRKLKYVDFSTSYSITGAF-LRNLGSGTGGNLLEVLILRDCMHLKEVEVA--RFLTAVLTGDFKFLRHLDISNREG 436 (547)
Q Consensus 361 ~~~~~~L~~L~Ls~c~~lt~~~-l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~--~~l~~~l~~~~~~L~~L~Ls~c~~ 436 (547)
...+++|++|++++| .+++-. +..+..++ +|++|++++|+ ++...-. ..+ +.+++|+.|++++|..
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~---~L~~L~l~~N~-i~~~~~~~~~~~-----~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLK---SLTYLCILRNP-VTNKKHYRLYVI-----YKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCT---TCCEEECCSSG-GGGSTTHHHHHH-----HHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCC---CCCEEEecCCC-CCCcHhHHHHHH-----HHCCccceeCCCcCCH
Confidence 345888999999988 665421 12344444 48888888864 2221110 111 2578888888888753
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.27 E-value=2.6e-07 Score=88.36 Aligned_cols=132 Identities=10% Similarity=-0.036 Sum_probs=89.9
Q ss_pred CCCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCC--CCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcch
Q 042559 255 AGSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHV--ELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTC 332 (547)
Q Consensus 255 ~~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~--i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l 332 (547)
.+++|++|+|++|.. +.. ....+..+++|++|+|+++.- +....+ .++++|++|+|++|. ++...-
T Consensus 38 ~~~~L~~L~Ls~n~i-~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~----~~l~~L~~L~Ls~N~-l~~l~~----- 105 (229)
T 3e6j_A 38 IPTNAQILYLHDNQI-TKL-EPGVFDSLINLKELYLGSNQLGALPVGVF----DSLTQLTVLDLGTNQ-LTVLPS----- 105 (229)
T ss_dssp CCTTCSEEECCSSCC-CCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSC-CCCCCT-----
T ss_pred CCCCCCEEEcCCCcc-Ccc-CHHHhhCccCCcEEECCCCCCCCcChhhc----ccCCCcCEEECCCCc-CCccCh-----
Confidence 346899999999854 321 123346789999999999742 222222 678999999999985 432221
Q ss_pred HHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCC
Q 042559 333 VDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMH 405 (547)
Q Consensus 333 ~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~ 405 (547)
.....+++|++|++++|.++. +..-...+++|++|+|++| .++......+. .+++|++|+|++++.
T Consensus 106 -~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 106 -AVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQN-QLKSIPHGAFD---RLSSLTHAYLFGNPW 171 (229)
T ss_dssp -TTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSS-CCCCCCTTTTT---TCTTCCEEECTTSCB
T ss_pred -hHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCC-cCCccCHHHHh---CCCCCCEEEeeCCCc
Confidence 245678999999999998773 2222256899999999998 77643222233 344599999998653
No 123
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.25 E-value=3.1e-06 Score=78.56 Aligned_cols=117 Identities=9% Similarity=0.086 Sum_probs=89.2
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhc---CCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHH
Q 042559 258 LLRRLHLYNIERMDNASLSMALSA---CPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVD 334 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~---~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~ 334 (547)
.|+.|+|+++..+.+.+...++.. ...|++|+|++| .+.+.+..+|+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~---------------------------- 92 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIE---------------------------- 92 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHH----------------------------
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHH----------------------------
Confidence 599999988768899887776654 456888888887 677777655443
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcC---CCCcEEeccCCC--CCCHHHHHHHHc-CCCCCCccEEeeeCC
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGF---RKLKYVDFSTSY--SITGAFLRNLGS-GTGGNLLEVLILRDC 403 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~---~~L~~L~Ls~c~--~lt~~~l~~L~~-~~~l~~L~~L~Ls~C 403 (547)
.+.....|++|+|++|.|++.|...|++.+ ..|++|+|+++. .+++.+..+++. +...++|+.|+++.+
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 445567799999999999999999888755 469999998752 678888777765 333446999999864
No 124
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.21 E-value=9.1e-08 Score=104.78 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=100.1
Q ss_pred CCCCccEEEEeCCCCCCHHHHH-HHHhcCCCccEEEEecCC--CCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcc
Q 042559 255 AGSLLRRLHLYNIERMDNASLS-MALSACPSLLDLEIVGLH--VELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPT 331 (547)
Q Consensus 255 ~~~~L~~L~L~~c~~lt~~~L~-~l~~~~~~L~~L~Ls~c~--~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~ 331 (547)
.++++++|+|+++. ++. +. ..+..+++|++|+|++|. .+.+..+ .++++|++|+|++|. ++....
T Consensus 50 lp~~~~~LdLs~N~-i~~--l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f----~~L~~L~~L~Ls~N~-l~~l~~---- 117 (635)
T 4g8a_A 50 LPFSTKNLDLSFNP-LRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNP-IQSLAL---- 117 (635)
T ss_dssp SCTTCCEEECTTSC-CCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTT----TTCTTCCEEECTTCC-CCEECG----
T ss_pred CCcCCCEEEeeCCC-CCC--CCHHHHhCCCCCCEEECCCCcCCCcChhHh----cCCCCCCEEEccCCc-CCCCCH----
Confidence 45689999999984 442 21 234678999999999983 2223334 678999999999985 432221
Q ss_pred hHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHH-HHHHHHcCCCCCCccEEeeeCCCCCCH--
Q 042559 332 CVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGA-FLRNLGSGTGGNLLEVLILRDCMHLKE-- 408 (547)
Q Consensus 332 l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~-~l~~L~~~~~l~~L~~L~Ls~C~~L~~-- 408 (547)
....++++|++|++++|.++.-.... ..++++|++|+|++| .++.. ....++.++ .|++|+++++. ++.
T Consensus 118 --~~f~~L~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~---~L~~L~L~~N~-l~~~~ 189 (635)
T 4g8a_A 118 --GAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLT---NLEHLDLSSNK-IQSIY 189 (635)
T ss_dssp --GGGTTCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCT---TCCEEECCSSC-CCEEC
T ss_pred --HHhcCCCCCCEEECCCCcCCCCChhh-hhcCcccCeeccccC-ccccCCCchhhccch---hhhhhcccCcc-ccccc
Confidence 25677899999999998776422112 345899999999998 56432 122334444 49999999864 332
Q ss_pred -HHHHHHHHHhhcCCCCCccEEeeeCCCC
Q 042559 409 -VEVARFLTAVLTGDFKFLRHLDISNREG 436 (547)
Q Consensus 409 -~~l~~~l~~~l~~~~~~L~~L~Ls~c~~ 436 (547)
..+.. +.. ....+..++++.|..
T Consensus 190 ~~~l~~-L~~----l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 190 CTDLRV-LHQ----MPLLNLSLDLSLNPM 213 (635)
T ss_dssp GGGGHH-HHT----CTTCCCEEECTTCCC
T ss_pred cccccc-hhh----hhhhhhhhhcccCcc
Confidence 22211 111 223455677777754
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.21 E-value=1.3e-07 Score=88.16 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=93.7
Q ss_pred CccEEEEeCCCC-CCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 258 LLRRLHLYNIER-MDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 258 ~L~~L~L~~c~~-lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
.|+.+.+.+... ++ .+......+++|++|+++++. ++. +. ...++++|++|++++|. ++ .+.. ..
T Consensus 24 ~l~~~~l~~~~~~l~--~l~~~~~~l~~L~~L~ls~n~-l~~--l~-~~~~l~~L~~L~l~~n~-l~--~l~~-----~~ 89 (198)
T 1ds9_A 24 EAEKVELHGMIPPIE--KMDATLSTLKACKHLALSTNN-IEK--IS-SLSGMENLRILSLGRNL-IK--KIEN-----LD 89 (198)
T ss_dssp TCSEEECCBCCTTCC--CCHHHHHHTTTCSEEECSEEE-ESC--CC-CHHHHTTCCEEEEEEEE-EC--SCSS-----HH
T ss_pred chheeEeccccCcHh--hhhHHHhcCCCCCEEECCCCC-Ccc--cc-ccccCCCCCEEECCCCC-cc--cccc-----hh
Confidence 466666665421 11 123345678999999998863 222 11 22567899999999885 33 2332 55
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHH-HHHHHcCCCCCCccEEeeeCCCCCCHHHH----
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAF-LRNLGSGTGGNLLEVLILRDCMHLKEVEV---- 411 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~-l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l---- 411 (547)
..+++|++|++++|.+++- ..+. .+++|++|++++| .+++.. +..+..+++ |++|++++|+ ++...-
T Consensus 90 ~~~~~L~~L~L~~N~l~~l--~~~~-~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~---L~~L~l~~N~-l~~~~~~~~~ 161 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASL--SGIE-KLVNLRVLYMSNN-KITNWGEIDKLAALDK---LEDLLLAGNP-LYNDYKENNA 161 (198)
T ss_dssp HHHHHCSEEEEEEEECCCH--HHHH-HHHHSSEEEESEE-ECCCHHHHHHHTTTTT---CSEEEECSCH-HHHHHHTTTT
T ss_pred hcCCcCCEEECcCCcCCcC--Cccc-cCCCCCEEECCCC-cCCchhHHHHHhcCCC---CCEEEecCCc-cccccccccc
Confidence 5678899999999988763 3443 4788999999998 777533 355666655 9999999874 222100
Q ss_pred -HHHHHHhhcCCCCCccEEe
Q 042559 412 -ARFLTAVLTGDFKFLRHLD 430 (547)
Q Consensus 412 -~~~l~~~l~~~~~~L~~L~ 430 (547)
..+.... ...+++|+.|+
T Consensus 162 ~~~~~~~~-~~~l~~L~~Ld 180 (198)
T 1ds9_A 162 TSEYRIEV-VKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHH-HHHCSSCSEEC
T ss_pred hHHHHHHH-HHhCCCcEEEC
Confidence 0111111 12578888886
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.19 E-value=5.1e-07 Score=95.59 Aligned_cols=55 Identities=13% Similarity=-0.006 Sum_probs=26.1
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCC
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSK 320 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~ 320 (547)
.++|+.|++++|.. +. +....++|++|++++|. ++. +.. ...+++|++|++++|.
T Consensus 194 l~~L~~L~l~~N~l-~~-----l~~~~~~L~~L~l~~n~-l~~--lp~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 194 LPFLTAIYADNNSL-KK-----LPDLPLSLESIVAGNNI-LEE--LPE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp CTTCCEEECCSSCC-SS-----CCCCCTTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCcC-Cc-----CCCCcCcccEEECcCCc-CCc--ccc-cCCCCCCCEEECCCCc
Confidence 34566666666632 21 11123456666666652 211 111 1345566666666553
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.18 E-value=1.1e-07 Score=97.59 Aligned_cols=151 Identities=14% Similarity=0.017 Sum_probs=95.6
Q ss_pred CCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHH
Q 042559 282 CPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILL 361 (547)
Q Consensus 282 ~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~ 361 (547)
.+.++.|+|+++ .++......+..++++|++|+|++|. ++.... ..+..+++|++|+|++|.++..... ..
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~------~~~~~l~~L~~L~Ls~N~l~~~~~~-~~ 108 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISS------EAFVPVPNLRYLDLSSNHLHTLDEF-LF 108 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECT------TTTTTCTTCCEEECCSSCCCEECTT-TT
T ss_pred CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccCh------hhccCCCCCCEEECCCCcCCcCCHH-Hh
Confidence 346899999997 34332211111278999999999885 332221 2456789999999999987643222 23
Q ss_pred hcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccch
Q 042559 362 KGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASEG 441 (547)
Q Consensus 362 ~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~ 441 (547)
.++++|++|+|++| .|+......+..+ ++|++|+|+++ .++.... ..+. ..+.+++|+.|+|++|...+-..
T Consensus 109 ~~l~~L~~L~L~~N-~i~~~~~~~~~~l---~~L~~L~L~~N-~l~~l~~-~~~~--~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 109 SDLQALEVLLLYNN-HIVVVDRNAFEDM---AQLQKLYLSQN-QISRFPV-ELIK--DGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTTTTC---TTCCEEECCSS-CCCSCCG-GGTC------CTTCCEEECCSSCCCCCCH
T ss_pred CCCcCCCEEECCCC-cccEECHHHhCCc---ccCCEEECCCC-cCCeeCH-HHhc--CcccCCcCCEEECCCCCCCccCH
Confidence 46899999999999 7765433334444 45999999986 4443221 0000 00358999999999997554344
Q ss_pred hhhccCCC
Q 042559 442 DWYDRCFN 449 (547)
Q Consensus 442 ~~l~~c~~ 449 (547)
+.+..++.
T Consensus 181 ~~~~~l~~ 188 (361)
T 2xot_A 181 TDLQKLPA 188 (361)
T ss_dssp HHHHHSCH
T ss_pred HHhhhccH
Confidence 44544443
No 128
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.16 E-value=2.8e-07 Score=90.74 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=43.6
Q ss_pred CCCCCCChHhHHHhccCCCHHHHH-HHHHHhHHHHHHhcCCCCccccc
Q 042559 120 FLAWPLPPDLTIKVFSMLDTQSLC-HAAATCSMFNKFAMDPLCYANID 166 (547)
Q Consensus 120 ~~~~~LP~elL~~IFs~L~~~dl~-~~a~VCk~W~~l~~d~~lw~~vd 166 (547)
..+..||+|++..||++|+.++|+ +|++|||+|+.++.++.+|+..-
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~ 96 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKC 96 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHh
Confidence 458899999999999999999999 99999999999999999998763
No 129
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.16 E-value=6.9e-08 Score=105.74 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=19.6
Q ss_pred CCCCccEEeeeCCCCCccchhhhccCCCCCccchhhhh
Q 042559 422 DFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEVS 459 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l~ 459 (547)
++++|++|+|++|...+-.+..+..+++|+.+.+..+.
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 45566666666654332233445555555555554443
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.14 E-value=5.9e-07 Score=85.30 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=85.4
Q ss_pred CCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHc
Q 042559 309 PLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGS 388 (547)
Q Consensus 309 ~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~ 388 (547)
++|+.|+++++. ++.... ..+..+++|+.|+|++|.++......+ .++++|++|+|++| .|+......+
T Consensus 32 ~~l~~L~l~~n~-i~~i~~------~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~f-- 100 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPP------GAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGN-KITELPKSLF-- 100 (220)
T ss_dssp TTCCEEECCSSC-CCEECT------TSSTTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSS-CCCCCCTTTT--
T ss_pred cCCCEEECCCCc-CCCcCH------hHhhCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCC-cCCccCHhHc--
Confidence 457777777664 222111 134567889999999987765333333 45899999999998 7763221112
Q ss_pred CCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhh
Q 042559 389 GTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEV 458 (547)
Q Consensus 389 ~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l 458 (547)
..+++|++|+|+++. ++.... ...+.+++|++|+|++|...+-..+.+..+++|+.+.+..+
T Consensus 101 -~~l~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 101 -EGLFSLQLLLLNANK-INCLRV------DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp -TTCTTCCEEECCSSC-CCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -cCCCCCCEEECCCCC-CCEeCH------HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 334569999999864 433211 01236899999999999765555566778888887766544
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.09 E-value=8.4e-07 Score=84.26 Aligned_cols=150 Identities=10% Similarity=0.071 Sum_probs=96.6
Q ss_pred cEEEEecCCCCCHHHHHHHHhc-CCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcC
Q 042559 286 LDLEIVGLHVELRQTLMSVSMS-CPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGF 364 (547)
Q Consensus 286 ~~L~Ls~c~~i~~~~l~~l~~~-~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~ 364 (547)
+.++++++. ++. +... .+.++.|+++++. ++..... ..+..+++|++|++++|.++......+ .++
T Consensus 14 ~~l~~s~n~-l~~-----iP~~~~~~~~~L~L~~N~-l~~~~~~-----~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l 80 (220)
T 2v70_A 14 TTVDCSNQK-LNK-----IPEHIPQYTAELRLNNNE-FTVLEAT-----GIFKKLPQLRKINFSNNKITDIEEGAF-EGA 80 (220)
T ss_dssp TEEECCSSC-CSS-----CCSCCCTTCSEEECCSSC-CCEECCC-----CCGGGCTTCCEEECCSSCCCEECTTTT-TTC
T ss_pred CEeEeCCCC-ccc-----CccCCCCCCCEEEcCCCc-CCccCch-----hhhccCCCCCEEECCCCcCCEECHHHh-CCC
Confidence 577777652 221 1112 3458899999875 3332111 145678999999999988765332223 458
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccchhhh
Q 042559 365 RKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASEGDWY 444 (547)
Q Consensus 365 ~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l 444 (547)
++|++|+|++| .++......+..++ +|++|+|+++. ++.... ...+.+++|++|+|++|...+-.++.+
T Consensus 81 ~~L~~L~Ls~N-~l~~~~~~~~~~l~---~L~~L~Ls~N~-l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 81 SGVNEILLTSN-RLENVQHKMFKGLE---SLKTLMLRSNR-ITCVGN------DSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp TTCCEEECCSS-CCCCCCGGGGTTCS---SCCEEECTTSC-CCCBCT------TSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CCCCEEECCCC-ccCccCHhHhcCCc---CCCEEECCCCc-CCeECH------hHcCCCccCCEEECCCCcCCEECHHHh
Confidence 89999999998 77654333344444 59999999864 332211 011367899999999986655556777
Q ss_pred ccCCCCCccchhhhh
Q 042559 445 DRCFNSRIIPLKEVS 459 (547)
Q Consensus 445 ~~c~~L~~l~l~~l~ 459 (547)
..+++|+.+.+..+.
T Consensus 150 ~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 150 DTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCTTCCEEECCSCC
T ss_pred cCCCCCCEEEecCcC
Confidence 888888877665554
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.03 E-value=2.1e-07 Score=86.80 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=86.2
Q ss_pred hcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHH
Q 042559 306 MSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRN 385 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~ 385 (547)
..+++|++|++++|. ++. +. .+..+++|+.|++++|.++. +..+...+++|++|++++| .+++. ..
T Consensus 45 ~~l~~L~~L~ls~n~-l~~--l~------~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N-~l~~l--~~ 110 (198)
T 1ds9_A 45 STLKACKHLALSTNN-IEK--IS------SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN-QIASL--SG 110 (198)
T ss_dssp HHTTTCSEEECSEEE-ESC--CC------CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE-ECCCH--HH
T ss_pred hcCCCCCEEECCCCC-Ccc--cc------ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC-cCCcC--Cc
Confidence 678999999999885 333 22 34567899999999987663 2233444688999999999 77763 35
Q ss_pred HHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccchh----------hhccCCCCCcc
Q 042559 386 LGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASEGD----------WYDRCFNSRII 453 (547)
Q Consensus 386 L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~----------~l~~c~~L~~l 453 (547)
+..+++ |++|++++|. +++......+ +.+++|++|++++|+.....+. .+..+++|+.+
T Consensus 111 ~~~l~~---L~~L~l~~N~-i~~~~~~~~l-----~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 111 IEKLVN---LRVLYMSNNK-ITNWGEIDKL-----AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp HHHHHH---SSEEEESEEE-CCCHHHHHHH-----TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cccCCC---CCEEECCCCc-CCchhHHHHH-----hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 666555 9999999964 5543221111 3689999999999965433221 24666776655
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.02 E-value=3.7e-06 Score=88.94 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=88.0
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHh
Q 042559 257 SLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFV 336 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~ 336 (547)
++|++|++++|.. +. + ....++|++|++++|. ++. +.. ...+++|++|++++|. ++. +..
T Consensus 111 ~~L~~L~l~~n~l-~~--l---~~~~~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~~N~-l~~--lp~------- 170 (454)
T 1jl5_A 111 QSLKSLLVDNNNL-KA--L---SDLPPLLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVDNNS-LKK--LPD------- 170 (454)
T ss_dssp TTCCEEECCSSCC-SC--C---CSCCTTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSSC-CSC--CCC-------
T ss_pred CCCcEEECCCCcc-Cc--c---cCCCCCCCEEECcCCC-CCC--Ccc-cCCCCCCCEEECCCCc-Ccc--cCC-------
Confidence 5778888777733 21 1 1122578888887763 221 111 2567778888887774 322 211
Q ss_pred cCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHH
Q 042559 337 NNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLT 416 (547)
Q Consensus 337 ~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~ 416 (547)
..++|++|++++|.++. +.. ..++++|++|++++| .+++ +...+ .+|++|++++|. ++... .
T Consensus 171 -~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~~N-~l~~-----l~~~~--~~L~~L~l~~n~-l~~lp--~--- 232 (454)
T 1jl5_A 171 -LPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNN-SLKK-----LPDLP--LSLESIVAGNNI-LEELP--E--- 232 (454)
T ss_dssp -CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSS-CCSS-----CCCCC--TTCCEEECCSSC-CSSCC--C---
T ss_pred -CcccccEEECcCCcCCc--Ccc-ccCCCCCCEEECCCC-cCCc-----CCCCc--CcccEEECcCCc-CCccc--c---
Confidence 12478888888876654 222 245778888888887 5553 11211 258888888763 33211 0
Q ss_pred HhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccchhhh
Q 042559 417 AVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPLKEV 458 (547)
Q Consensus 417 ~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l~~l 458 (547)
.+.+++|++|++++|...+ .+. ..++|+.+.+...
T Consensus 233 ---~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N 267 (454)
T 1jl5_A 233 ---LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDN 267 (454)
T ss_dssp ---CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSS
T ss_pred ---cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCC
Confidence 1367788888888875432 222 1355665555443
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.98 E-value=2.5e-06 Score=92.66 Aligned_cols=32 Identities=9% Similarity=-0.005 Sum_probs=15.3
Q ss_pred CCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCC
Q 042559 339 CPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTS 375 (547)
Q Consensus 339 ~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c 375 (547)
+++|+.|++++|.++. +. ..+++|++|+|++|
T Consensus 139 l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 139 PALLEYINADNNQLTM--LP---ELPTSLEVLSVRNN 170 (571)
T ss_dssp CTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSS
T ss_pred CccccEEeCCCCccCc--CC---CcCCCcCEEECCCC
Confidence 4555555555554432 11 13445555555555
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.96 E-value=4.7e-07 Score=92.33 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=42.9
Q ss_pred CCccEEEEeCCCCCCHHHHHH-HHhcCCCccEEEEecCCCCC---HHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcch
Q 042559 257 SLLRRLHLYNIERMDNASLSM-ALSACPSLLDLEIVGLHVEL---RQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTC 332 (547)
Q Consensus 257 ~~L~~L~L~~c~~lt~~~L~~-l~~~~~~L~~L~Ls~c~~i~---~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l 332 (547)
+++++|+|+++. ++. +.. .+.++++|++|+|+++.... ...+ .++++|+.+.+.++..++...-
T Consensus 30 ~~l~~L~Ls~N~-i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f----~~L~~l~~~l~~~~N~l~~l~~----- 97 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVF----SNLPKLHEIRIEKANNLLYINP----- 97 (350)
T ss_dssp TTCSEEEEESCC-CSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSB----CSCTTCCEEEEEEETTCCEECT-----
T ss_pred CCCCEEEccCCc-CCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHh----hcchhhhhhhcccCCcccccCc-----
Confidence 467777777763 331 221 23567777777777764221 1122 4555655544433333332211
Q ss_pred HHHhcCCCCcceEEeeccCCC
Q 042559 333 VDFVNNCPNLTSMALRGFKLP 353 (547)
Q Consensus 333 ~~~~~~~~~L~~L~L~~~~lt 353 (547)
.....+++|++|++++|.++
T Consensus 98 -~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 98 -EAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp -TSBCCCTTCCEEEEEEECCS
T ss_pred -hhhhhccccccccccccccc
Confidence 13445666777777666443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=5.4e-06 Score=83.54 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=34.6
Q ss_pred CHHHHHHHHc-CCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc-chhhhccCCCCC-ccch
Q 042559 379 TGAFLRNLGS-GTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS-EGDWYDRCFNSR-IIPL 455 (547)
Q Consensus 379 t~~~l~~L~~-~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~-~~~~l~~c~~L~-~l~l 455 (547)
.......+.. |++ |++|+|.++. ++..+- ....+|++|+.|++.++ ++. ....+.+|++|+ .+.+
T Consensus 214 ~~~~~~~l~~~~~~---L~~l~L~~n~-i~~I~~------~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 214 DNADFKLIRDYMPN---LVSLDISKTN-ATTIPD------FTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CHHHHHHHHHHCTT---CCEEECTTBC-CCEECT------TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEE
T ss_pred cHHHHHHHHHhcCC---CeEEECCCCC-cceecH------hhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEE
Confidence 3333444433 444 7777777632 322111 01136777777777775 444 334457777776 5544
No 137
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.90 E-value=1.4e-06 Score=91.36 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=44.0
Q ss_pred CCCCCCChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcC-CCCcccccc
Q 042559 120 FLAWPLPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMD-PLCYANIDL 167 (547)
Q Consensus 120 ~~~~~LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d-~~lw~~vdL 167 (547)
..+..||+|++.+||+||+.+++++|++|||+|++++.+ +.+|+.+-+
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~ 61 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLI 61 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHH
T ss_pred CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 447889999999999999999999999999999999998 899998754
No 138
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.87 E-value=2.2e-06 Score=89.49 Aligned_cols=47 Identities=23% Similarity=0.457 Sum_probs=43.5
Q ss_pred CCCCCCChH----hHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCccccc
Q 042559 120 FLAWPLPPD----LTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYANID 166 (547)
Q Consensus 120 ~~~~~LP~e----lL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~~vd 166 (547)
..+..||+| |+.+||+||+.+++++|++|||+|+.++.++.+|+.+-
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~ 59 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI 59 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 346789999 99999999999999999999999999999999999873
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.84 E-value=9e-07 Score=99.26 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=60.0
Q ss_pred hcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHH
Q 042559 306 MSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRN 385 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~ 385 (547)
..++.|+.|+|++|.. . .+.. -+..+++|++|+|++|.++ .....+ ..+++|++|+|++| .|+ .....
T Consensus 221 ~~l~~L~~L~Ls~n~l-~--~l~~-----~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N-~l~-~lp~~ 288 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQI-F--NISA-----NIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHN-RLT-SLPAE 288 (727)
T ss_dssp -CCCCCCEEECTTSCC-S--CCCG-----GGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTS-CCS-SCCSS
T ss_pred ccCCCCcEEECCCCCC-C--CCCh-----hhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCC-cCC-ccChh
Confidence 4556677777766652 2 1221 2335667777777776655 111122 34667777777776 555 22333
Q ss_pred HHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccchhh
Q 042559 386 LGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASEGDW 443 (547)
Q Consensus 386 L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~ 443 (547)
++.+++ |++|+|++| .++.... ..+.+++|+.|+|++|...+..++.
T Consensus 289 ~~~l~~---L~~L~L~~N-~l~~lp~-------~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 289 LGSCFQ---LKYFYFFDN-MVTTLPW-------EFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp GGGGTT---CSEEECCSS-CCCCCCS-------STTSCTTCCCEECTTSCCCSHHHHH
T ss_pred hcCCCC---CCEEECCCC-CCCccCh-------hhhcCCCccEEeCCCCccCCCChHH
Confidence 433333 777777765 3331110 0135667777777777655444333
No 140
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.80 E-value=5.6e-06 Score=86.44 Aligned_cols=47 Identities=30% Similarity=0.424 Sum_probs=43.7
Q ss_pred CCCCCCChHhHHHhccCCCHHHHHHHHHHhHHHHHHhcCCCCccccc
Q 042559 120 FLAWPLPPDLTIKVFSMLDTQSLCHAAATCSMFNKFAMDPLCYANID 166 (547)
Q Consensus 120 ~~~~~LP~elL~~IFs~L~~~dl~~~a~VCk~W~~l~~d~~lw~~vd 166 (547)
..+..||+|++.+||+||+.++++++++|||+|+.++.++.+|+.+-
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence 45899999999999999999999999999999999999999998763
No 141
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.78 E-value=1.4e-06 Score=88.68 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=64.8
Q ss_pred CCccEEEEecCCCCC---HHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEe-eccCCCHHHHH
Q 042559 283 PSLLDLEIVGLHVEL---RQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMAL-RGFKLPDYKIR 358 (547)
Q Consensus 283 ~~L~~L~Ls~c~~i~---~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L-~~~~ltd~~l~ 358 (547)
++|++|+|+++. ++ ...+ .++++|++|+|++|...+.... ....++++|+++.+ .+++++.-...
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~~~f----~~l~~L~~L~Ls~N~i~~~i~~------~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQKGAF----SGFGDLEKIEISQNDVLEVIEA------DVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TTCSEEEEESCC-CSEECTTSS----TTCTTCCEEEEECCTTCCEECT------TSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCCEEEccCCc-CCCcCHHHH----cCCCCCCEEECcCCCCCCccCh------hHhhcchhhhhhhcccCCcccccCch
Confidence 579999999973 33 2223 6789999999999874332111 13456778776544 45666532222
Q ss_pred HHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCC
Q 042559 359 ILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLK 407 (547)
Q Consensus 359 ~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~ 407 (547)
....+++|++|++++| .++....... .....+..|++.++.+++
T Consensus 99 -~f~~l~~L~~L~l~~n-~l~~~~~~~~---~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 99 -AFQNLPNLQYLLISNT-GIKHLPDVHK---IHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp -SBCCCTTCCEEEEEEE-CCSSCCCCTT---CCBSSCEEEEEESCTTCC
T ss_pred -hhhhcccccccccccc-ccccCCchhh---cccchhhhhhhccccccc
Confidence 2346899999999998 5543211111 111235566666555443
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.75 E-value=5e-06 Score=76.99 Aligned_cols=113 Identities=14% Similarity=0.126 Sum_probs=73.8
Q ss_pred CCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHc
Q 042559 309 PLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGS 388 (547)
Q Consensus 309 ~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~ 388 (547)
++|++|+++++. ++..... .++..+++|++|+|++|.++......+ .++++|++|+|+++ .+++.....+.
T Consensus 29 ~~l~~L~l~~n~-i~~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~- 99 (192)
T 1w8a_A 29 LHTTELLLNDNE-LGRISSD-----GLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGEN-KIKEISNKMFL- 99 (192)
T ss_dssp TTCSEEECCSCC-CCSBCCS-----CSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSC-CCCEECSSSST-
T ss_pred CCCCEEECCCCc-CCccCCc-----cccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCC-cCCccCHHHhc-
Confidence 479999999885 3332221 135678899999999987765333333 35889999999998 77654332233
Q ss_pred CCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCcc
Q 042559 389 GTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 389 ~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~ 439 (547)
++++|++|+|+++. ++.... ...+.+++|++|++++|+...+
T Consensus 100 --~l~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 100 --GLHQLKTLNLYDNQ-ISCVMP------GSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp --TCTTCCEEECCSSC-CCEECT------TSSTTCTTCCEEECTTCCBCCS
T ss_pred --CCCCCCEEECCCCc-CCeeCH------HHhhcCCCCCEEEeCCCCccCc
Confidence 34459999999853 432211 0113678899999999876655
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.74 E-value=7.4e-06 Score=74.56 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=10.6
Q ss_pred CCCCccEEeeeCCCCCcc
Q 042559 422 DFKFLRHLDISNREGLAS 439 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l~~ 439 (547)
.+++|++|++++|+....
T Consensus 122 ~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 122 RLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCTTCCEEECCSSCBCCC
T ss_pred CCcccCEEEecCCCeecc
Confidence 456666666666654433
No 144
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.73 E-value=1.5e-05 Score=86.45 Aligned_cols=175 Identities=19% Similarity=0.116 Sum_probs=117.3
Q ss_pred CccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhc
Q 042559 258 LLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVN 337 (547)
Q Consensus 258 ~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~ 337 (547)
+|+.|+|+++. ++. +.. ..+++|++|+|+++. ++. +. ..+++|++|++++|. ++. +. . +
T Consensus 60 ~L~~L~Ls~n~-L~~--lp~--~l~~~L~~L~Ls~N~-l~~--ip---~~l~~L~~L~Ls~N~-l~~--ip-----~-l- 118 (571)
T 3cvr_A 60 QFSELQLNRLN-LSS--LPD--NLPPQITVLEITQNA-LIS--LP---ELPASLEYLDACDNR-LST--LP-----E-L- 118 (571)
T ss_dssp TCSEEECCSSC-CSC--CCS--CCCTTCSEEECCSSC-CSC--CC---CCCTTCCEEECCSSC-CSC--CC-----C-C-
T ss_pred CccEEEeCCCC-CCc--cCH--hHcCCCCEEECcCCC-Ccc--cc---cccCCCCEEEccCCC-CCC--cc-----h-h-
Confidence 69999999984 442 222 125789999999983 332 21 457899999999985 332 32 1 1
Q ss_pred CCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHH
Q 042559 338 NCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTA 417 (547)
Q Consensus 338 ~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~ 417 (547)
..+|++|++++|.++. +.. .+++|++|+|++| .++. +.. .+++|++|+|++|. ++....
T Consensus 119 -~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N-~l~~-----lp~--~l~~L~~L~Ls~N~-L~~lp~------ 177 (571)
T 3cvr_A 119 -PASLKHLDVDNNQLTM--LPE---LPALLEYINADNN-QLTM-----LPE--LPTSLEVLSVRNNQ-LTFLPE------ 177 (571)
T ss_dssp -CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSS-CCSC-----CCC--CCTTCCEEECCSSC-CSCCCC------
T ss_pred -hcCCCEEECCCCcCCC--CCC---cCccccEEeCCCC-ccCc-----CCC--cCCCcCEEECCCCC-CCCcch------
Confidence 2289999999998765 222 5899999999999 7764 112 24469999999974 433111
Q ss_pred hhcCCCCCccEEeeeCCCCCccchhhhccCCCC-------CccchhhhhhcCCCcEEEeecCCCCCcccccccccccccc
Q 042559 418 VLTGDFKFLRHLDISNREGLASEGDWYDRCFNS-------RIIPLKEVSEERPDICVLAEFPSEGSFIDIEQMVDSEFNS 490 (547)
Q Consensus 418 ~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L-------~~l~l~~l~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~n~ 490 (547)
-.++|+.|+|++|.. +..+. +.. +| +.+.+..+. +..+|.....+..+..++...|.
T Consensus 178 ----l~~~L~~L~Ls~N~L-~~lp~-~~~--~L~~~~~~L~~L~Ls~N~--------l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 178 ----LPESLEALDVSTNLL-ESLPA-VPV--RNHHSEETEIFFRCRENR--------ITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ----CCTTCCEEECCSSCC-SSCCC-CC----------CCEEEECCSSC--------CCCCCGGGGGSCTTEEEECCSSS
T ss_pred ----hhCCCCEEECcCCCC-Cchhh-HHH--hhhcccccceEEecCCCc--------ceecCHHHhcCCCCCEEEeeCCc
Confidence 127899999999954 45433 332 45 666555543 12577777778888889998885
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.73 E-value=7.5e-06 Score=89.00 Aligned_cols=124 Identities=13% Similarity=0.067 Sum_probs=87.0
Q ss_pred CCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHh
Q 042559 283 PSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLK 362 (547)
Q Consensus 283 ~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~ 362 (547)
..|+.|+|+++. ++. +.. ...+++|+.|++++|. ++ .++ ..+..+++|+.|+|++|.++. +.. ..
T Consensus 441 ~~L~~L~Ls~n~-l~~--lp~-~~~l~~L~~L~Ls~N~-l~--~lp-----~~~~~l~~L~~L~Ls~N~l~~--lp~-l~ 505 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTV--LCH-LEQLLLVTHLDLSHNR-LR--ALP-----PALAALRCLEVLQASDNALEN--VDG-VA 505 (567)
T ss_dssp TTCSEEECTTSC-CSS--CCC-GGGGTTCCEEECCSSC-CC--CCC-----GGGGGCTTCCEEECCSSCCCC--CGG-GT
T ss_pred cCceEEEecCCC-CCC--CcC-ccccccCcEeecCccc-cc--ccc-----hhhhcCCCCCEEECCCCCCCC--Ccc-cC
Confidence 369999999873 322 112 3678999999999986 33 333 366789999999999998875 333 34
Q ss_pred cCCCCcEEeccCCCCCCHHH-HHHHHcCCCCCCccEEeeeCCCCCCHH--HHHHHHHHhhcCCCCCccEEee
Q 042559 363 GFRKLKYVDFSTSYSITGAF-LRNLGSGTGGNLLEVLILRDCMHLKEV--EVARFLTAVLTGDFKFLRHLDI 431 (547)
Q Consensus 363 ~~~~L~~L~Ls~c~~lt~~~-l~~L~~~~~l~~L~~L~Ls~C~~L~~~--~l~~~l~~~l~~~~~~L~~L~L 431 (547)
.+++|++|+|++| .+++.. +..++.+++ |++|+|++++ ++.. .+..+.. .+++|+.|++
T Consensus 506 ~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~---L~~L~L~~N~-l~~~~~~~~~l~~-----~lp~L~~L~l 567 (567)
T 1dce_A 506 NLPRLQELLLCNN-RLQQSAAIQPLVSCPR---LVLLNLQGNS-LCQEEGIQERLAE-----MLPSVSSILT 567 (567)
T ss_dssp TCSSCCEEECCSS-CCCSSSTTGGGGGCTT---CCEEECTTSG-GGGSSSCTTHHHH-----HCTTCSEEEC
T ss_pred CCCCCcEEECCCC-CCCCCCCcHHHhcCCC---CCEEEecCCc-CCCCccHHHHHHH-----HCcccCccCC
Confidence 5899999999998 887664 566666665 9999999864 3221 1111111 3788999864
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.72 E-value=1.6e-05 Score=73.68 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=42.8
Q ss_pred hcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHH
Q 042559 306 MSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRN 385 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~ 385 (547)
.++++|++|++++|. ++.... ..+..+++|++|+|++|.++......+ .++++|++|+|++| .|+......
T Consensus 51 ~~l~~L~~L~Ls~N~-i~~i~~------~~f~~l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~L~~N-~l~~~~~~~ 121 (193)
T 2wfh_A 51 SNYKHLTLIDLSNNR-ISTLSN------QSFSNMTQLLTLILSYNRLRCIPPRTF-DGLKSLRLLSLHGN-DISVVPEGA 121 (193)
T ss_dssp GGCTTCCEEECCSSC-CCCCCT------TTTTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECCSS-CCCBCCTTT
T ss_pred hcccCCCEEECCCCc-CCEeCH------hHccCCCCCCEEECCCCccCEeCHHHh-CCCCCCCEEECCCC-CCCeeChhh
Confidence 445555555555553 221111 133445666666666665543222222 24566777777666 554221111
Q ss_pred HHcCCCCCCccEEeeeCCCC
Q 042559 386 LGSGTGGNLLEVLILRDCMH 405 (547)
Q Consensus 386 L~~~~~l~~L~~L~Ls~C~~ 405 (547)
+. .+++|+.|+|++++.
T Consensus 122 ~~---~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 122 FN---DLSALSHLAIGANPL 138 (193)
T ss_dssp TT---TCTTCCEEECCSSCE
T ss_pred hh---cCccccEEEeCCCCe
Confidence 22 233477777776543
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.72 E-value=5.8e-06 Score=89.89 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=95.8
Q ss_pred HHHhcCCCccEEE-EecCCCCC--------HHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEe
Q 042559 277 MALSACPSLLDLE-IVGLHVEL--------RQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMAL 347 (547)
Q Consensus 277 ~l~~~~~~L~~L~-Ls~c~~i~--------~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L 347 (547)
.....+++|+.|+ ++.. .+. ...+..+. ...|+.|++++|. ++. ++ . +..+++|+.|+|
T Consensus 403 ~~l~~l~~L~~L~~l~~n-~~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~-l~~--lp-----~-~~~l~~L~~L~L 470 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAA-YLDDLRSKFLLENSVLKME--YADVRVLHLAHKD-LTV--LC-----H-LEQLLLVTHLDL 470 (567)
T ss_dssp HHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHH--HTTCSEEECTTSC-CSS--CC-----C-GGGGTTCCEEEC
T ss_pred HHHHHHHhcccCcchhhc-ccchhhhhhhhcccccccC--ccCceEEEecCCC-CCC--Cc-----C-ccccccCcEeec
Confidence 4456677888887 3321 111 11222222 2369999999985 432 33 2 567899999999
Q ss_pred eccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHH-HHHHHHHhhcCCCCCc
Q 042559 348 RGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVE-VARFLTAVLTGDFKFL 426 (547)
Q Consensus 348 ~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~-l~~~l~~~l~~~~~~L 426 (547)
++|.++. +..-...+++|++|+|++| .|++ +..++.++ +|++|+|+++ .++... . . ..+.+++|
T Consensus 471 s~N~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp~l~~l~---~L~~L~Ls~N-~l~~~~~p-~-----~l~~l~~L 535 (567)
T 1dce_A 471 SHNRLRA--LPPALAALRCLEVLQASDN-ALEN--VDGVANLP---RLQELLLCNN-RLQQSAAI-Q-----PLVSCPRL 535 (567)
T ss_dssp CSSCCCC--CCGGGGGCTTCCEEECCSS-CCCC--CGGGTTCS---SCCEEECCSS-CCCSSSTT-G-----GGGGCTTC
T ss_pred Ccccccc--cchhhhcCCCCCEEECCCC-CCCC--CcccCCCC---CCcEEECCCC-CCCCCCCc-H-----HHhcCCCC
Confidence 9998872 2223346999999999999 7875 23444444 5999999986 444331 1 0 11368999
Q ss_pred cEEeeeCCCCCccch---hhhccCCCCCcc
Q 042559 427 RHLDISNREGLASEG---DWYDRCFNSRII 453 (547)
Q Consensus 427 ~~L~Ls~c~~l~~~~---~~l~~c~~L~~l 453 (547)
+.|+|++|+..+..+ ..+..+++|+.|
T Consensus 536 ~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 999999997544321 223457777655
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.71 E-value=2.1e-06 Score=79.52 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=44.8
Q ss_pred hcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHH
Q 042559 306 MSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRN 385 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~ 385 (547)
..+++|++|++++|. ++.... ..+..+++|++|+|++|.++......+ .++++|++|+|++| .+++.....
T Consensus 51 ~~l~~L~~L~Ls~N~-l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~ 121 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQ-LTGIEP------NAFEGASHIQELQLGENKIKEISNKMF-LGLHQLKTLNLYDN-QISCVMPGS 121 (192)
T ss_dssp GGCTTCCEEECCSSC-CCCBCT------TTTTTCTTCCEEECCSCCCCEECSSSS-TTCTTCCEEECCSS-CCCEECTTS
T ss_pred ccCCCCCEEECCCCC-CCCcCH------hHcCCcccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCC-cCCeeCHHH
Confidence 445566666666553 221111 134455666666666665543222112 23566777777776 555432222
Q ss_pred HHcCCCCCCccEEeeeCCCC
Q 042559 386 LGSGTGGNLLEVLILRDCMH 405 (547)
Q Consensus 386 L~~~~~l~~L~~L~Ls~C~~ 405 (547)
+..+ ++|++|+|++++-
T Consensus 122 ~~~l---~~L~~L~L~~N~l 138 (192)
T 1w8a_A 122 FEHL---NSLTSLNLASNPF 138 (192)
T ss_dssp STTC---TTCCEEECTTCCB
T ss_pred hhcC---CCCCEEEeCCCCc
Confidence 3333 3477777776543
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.68 E-value=1.1e-05 Score=73.26 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=46.7
Q ss_pred hcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHH
Q 042559 306 MSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRN 385 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~ 385 (547)
..+++|++|++++|. ++.... .....+++|++|++++|.++..... ....+++|++|++++| .++......
T Consensus 49 ~~l~~L~~L~l~~n~-l~~~~~------~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~~ 119 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQ-IQSLPD------GVFDKLTKLTILYLHENKLQSLPNG-VFDKLTQLKELALDTN-QLKSVPDGI 119 (177)
T ss_dssp TTCTTCSEEECCSSC-CCCCCT------TTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred cCcccccEEECCCCc-ceEeCh------hHccCCCccCEEECCCCCccccCHH-HhhCCcccCEEECcCC-cceEeCHHH
Confidence 345666666666653 221111 1334566777777777655532211 2234677777777776 555321111
Q ss_pred HHcCCCCCCccEEeeeCCCCCC
Q 042559 386 LGSGTGGNLLEVLILRDCMHLK 407 (547)
Q Consensus 386 L~~~~~l~~L~~L~Ls~C~~L~ 407 (547)
+ ..+++|++|+|++++-..
T Consensus 120 ~---~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 120 F---DRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp T---TTCTTCCEEECCSSCBCC
T ss_pred h---cCCcccCEEEecCCCeec
Confidence 2 223347777777765443
No 150
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.68 E-value=8.1e-06 Score=75.72 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=45.1
Q ss_pred HhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHH
Q 042559 335 FVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARF 414 (547)
Q Consensus 335 ~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~ 414 (547)
.+.++++|++|++++|.++......+ .++++|++|+|++| .|+......+..+ ++|++|+|+++. ++....
T Consensus 49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N-~l~~i~~~~f~~l---~~L~~L~L~~N~-l~~~~~--- 119 (193)
T 2wfh_A 49 ELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYN-RLRCIPPRTFDGL---KSLRLLSLHGND-ISVVPE--- 119 (193)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTTTTTC---TTCCEEECCSSC-CCBCCT---
T ss_pred HhhcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCC-ccCEeCHHHhCCC---CCCCEEECCCCC-CCeeCh---
Confidence 34556666666666665543222122 24566666666666 5544322222222 336666666642 321111
Q ss_pred HHHhhcCCCCCccEEeeeCCCCCc
Q 042559 415 LTAVLTGDFKFLRHLDISNREGLA 438 (547)
Q Consensus 415 l~~~l~~~~~~L~~L~Ls~c~~l~ 438 (547)
.....+++|+.|++++|+...
T Consensus 120 ---~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 120 ---GAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ---TTTTTCTTCCEEECCSSCEEC
T ss_pred ---hhhhcCccccEEEeCCCCeec
Confidence 001245666666666665443
No 151
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.34 E-value=3.6e-05 Score=86.20 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=74.3
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHhcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHH
Q 042559 256 GSLLRRLHLYNIERMDNASLSMALSACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDF 335 (547)
Q Consensus 256 ~~~L~~L~L~~c~~lt~~~L~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~ 335 (547)
.++|+.|+|++|.... +..-+..+++|++|+|+++. ++ .+..-...+++|++|+|++|. ++ .++. .
T Consensus 223 l~~L~~L~Ls~n~l~~---l~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~-----~ 288 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFN---ISANIFKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPA-----E 288 (727)
T ss_dssp CCCCCEEECTTSCCSC---CCGGGGGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CS--SCCS-----S
T ss_pred CCCCcEEECCCCCCCC---CChhhcCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CC--ccCh-----h
Confidence 3479999999885422 32223478899999999873 33 111112678899999999886 43 3332 4
Q ss_pred hcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHH
Q 042559 336 VNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAF 382 (547)
Q Consensus 336 ~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~ 382 (547)
+..+++|++|+|++|.++.- ... ...+++|++|+|++| .+++..
T Consensus 289 ~~~l~~L~~L~L~~N~l~~l-p~~-~~~l~~L~~L~L~~N-~l~~~~ 332 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTL-PWE-FGNLCNLQFLGVEGN-PLEKQF 332 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCC-CSS-TTSCTTCCCEECTTS-CCCSHH
T ss_pred hcCCCCCCEEECCCCCCCcc-Chh-hhcCCCccEEeCCCC-ccCCCC
Confidence 56788999999999877521 112 345889999999998 777543
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.03 E-value=0.00022 Score=71.59 Aligned_cols=124 Identities=12% Similarity=0.025 Sum_probs=75.8
Q ss_pred CccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhc
Q 042559 284 SLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKG 363 (547)
Q Consensus 284 ~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~ 363 (547)
+++.+.+.+. +....+..+...|++|+.|+|.++. ++.. .. ....+|++|++|++..+ ++.-+- ..+.+
T Consensus 203 ~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I--~~----~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~ 271 (329)
T 3sb4_A 203 DINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTN-ATTI--PD----FTFAQKKYLLKIKLPHN-LKTIGQ-RVFSN 271 (329)
T ss_dssp GCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBC-CCEE--CT----TTTTTCTTCCEEECCTT-CCEECT-TTTTT
T ss_pred ccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCC-ccee--cH----hhhhCCCCCCEEECCcc-cceehH-HHhhC
Confidence 3455555543 4555666666779999999999764 3221 11 25567999999999886 322111 12356
Q ss_pred CCCCc-EEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEe
Q 042559 364 FRKLK-YVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLD 430 (547)
Q Consensus 364 ~~~L~-~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~ 430 (547)
|++|+ .+++.. .++.-.-.++..|.+ |+.|++.+. +++..+- ....+|++|+.|.
T Consensus 272 ~~~L~~~l~l~~--~l~~I~~~aF~~c~~---L~~l~l~~n-~i~~I~~------~aF~~~~~L~~ly 327 (329)
T 3sb4_A 272 CGRLAGTLELPA--SVTAIEFGAFMGCDN---LRYVLATGD-KITTLGD------ELFGNGVPSKLIY 327 (329)
T ss_dssp CTTCCEEEEECT--TCCEECTTTTTTCTT---EEEEEECSS-CCCEECT------TTTCTTCCCCEEE
T ss_pred ChhccEEEEEcc--cceEEchhhhhCCcc---CCEEEeCCC-ccCccch------hhhcCCcchhhhc
Confidence 89999 999976 444333334444554 999999653 3332221 0114788898875
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.92 E-value=0.0012 Score=64.31 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=20.0
Q ss_pred hcCCCccEEEEecCCCCCHHHHHHHHhcCCCccEEEecCCC
Q 042559 280 SACPSLLDLEIVGLHVELRQTLMSVSMSCPLLERLFFESSK 320 (547)
Q Consensus 280 ~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~L~~c~ 320 (547)
.++|+|+.|+|+++.-..-.++..+...+++|+.|+|++|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 45566666666655322212222233455666666666554
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.84 E-value=0.0003 Score=63.88 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=10.4
Q ss_pred CCCCccEEeeeCCCCC
Q 042559 422 DFKFLRHLDISNREGL 437 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l 437 (547)
.+++|++|+|++|+..
T Consensus 103 ~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 103 NLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TCTTCSEEECCSSCBC
T ss_pred cccCCCEEEeCCCCcc
Confidence 4666777777776544
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.83 E-value=0.00031 Score=63.45 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=40.6
Q ss_pred CCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhh
Q 042559 340 PNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVL 419 (547)
Q Consensus 340 ~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l 419 (547)
++|++|+|++|.++......+ .++++|++|+|+++ .|+......+. .+++|++|+|+++ +++.... ..
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~f~---~l~~L~~L~L~~N-~l~~~~~------~~ 97 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVF-DRLTQLTRLDLDNN-QLTVLPAGVFD---KLTQLTQLSLNDN-QLKSIPR------GA 97 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCT------TT
T ss_pred CCCcEEEcCCCcCCccChhhh-cCcccCCEEECCCC-CcCccChhhcc---CCCCCCEEECCCC-ccCEeCH------HH
Confidence 445555555554433211111 23555666666655 44422111112 2233666666654 2322110 01
Q ss_pred cCCCCCccEEeeeCCCCCcc
Q 042559 420 TGDFKFLRHLDISNREGLAS 439 (547)
Q Consensus 420 ~~~~~~L~~L~Ls~c~~l~~ 439 (547)
.+.+++|++|+|++|+....
T Consensus 98 ~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTTCTTCCEEECCSSCBCTT
T ss_pred hcCCCCCCEEEeCCCCCCCC
Confidence 13567788888888765443
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.76 E-value=0.00073 Score=61.23 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=4.6
Q ss_pred ccEEeeeCC
Q 042559 395 LEVLILRDC 403 (547)
Q Consensus 395 L~~L~Ls~C 403 (547)
|++|+|+++
T Consensus 107 L~~L~L~~N 115 (174)
T 2r9u_A 107 LTHIYLYNN 115 (174)
T ss_dssp CSEEECCSS
T ss_pred CCEEEeCCC
Confidence 555555543
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.72 E-value=0.00083 Score=60.54 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=5.7
Q ss_pred CCCCcEEeccCC
Q 042559 364 FRKLKYVDFSTS 375 (547)
Q Consensus 364 ~~~L~~L~Ls~c 375 (547)
+++|++|+|+++
T Consensus 77 l~~L~~L~L~~N 88 (170)
T 3g39_A 77 LTQLTQLSLNDN 88 (170)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 444444444444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.51 E-value=0.0038 Score=60.71 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=7.9
Q ss_pred hcCCCccEEEecCCC
Q 042559 306 MSCPLLERLFFESSK 320 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~ 320 (547)
.++++|+.|+|++|.
T Consensus 167 ~~l~~L~~L~Ls~N~ 181 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR 181 (267)
T ss_dssp HHCTTCCEEECTTSC
T ss_pred hhCCCCCEEECCCCC
Confidence 445555555555553
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.49 E-value=0.0027 Score=63.85 Aligned_cols=84 Identities=20% Similarity=0.132 Sum_probs=41.4
Q ss_pred HhcCCCccEEEEecCCCCCH---HHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHH
Q 042559 279 LSACPSLLDLEIVGLHVELR---QTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDY 355 (547)
Q Consensus 279 ~~~~~~L~~L~Ls~c~~i~~---~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~ 355 (547)
+..+++|++|+|+++..++. ..+ .++++|+.|+|++|. ++...- ..+.++++|++|+|++|.++.-
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~----~~l~~L~~L~l~~N~-l~~~~~------~~~~~l~~L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDL----RGLGELRNLTIVKSG-LRFVAP------DAFHFTPRLSRLNLSFNALESL 95 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGS----CSCCCCSEEECCSSC-CCEECT------TGGGSCSCCCEEECCSSCCSCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHh----ccccCCCEEECCCCc-cceeCH------HHhcCCcCCCEEeCCCCcccee
Confidence 44556677777765223321 122 456667777776664 322111 1345566666666666655421
Q ss_pred HHHHHHhcCCCCcEEeccCC
Q 042559 356 KIRILLKGFRKLKYVDFSTS 375 (547)
Q Consensus 356 ~l~~l~~~~~~L~~L~Ls~c 375 (547)
.. .+...++ |++|+|.++
T Consensus 96 ~~-~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 96 SW-KTVQGLS-LQELVLSGN 113 (347)
T ss_dssp CS-TTTCSCC-CCEEECCSS
T ss_pred CH-HHcccCC-ceEEEeeCC
Confidence 11 1112222 666666655
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.47 E-value=0.0018 Score=65.12 Aligned_cols=89 Identities=13% Similarity=0.057 Sum_probs=52.1
Q ss_pred hcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeeccCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHH
Q 042559 306 MSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGFKLPDYKIRILLKGFRKLKYVDFSTSYSITGAFLRN 385 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~ 385 (547)
..+++|+.|+|+++..++...- ..+..+++|+.|+|++|+++...... +.++++|++|+|+++ .|+.... .
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~------~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~-~ 98 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLEL------RDLRGLGELRNLTIVKSGLRFVAPDA-FHFTPRLSRLNLSFN-ALESLSW-K 98 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECG------GGSCSCCCCSEEECCSSCCCEECTTG-GGSCSCCCEEECCSS-CCSCCCS-T
T ss_pred CCCCCeeEEEccCCCCCCCcCh------hHhccccCCCEEECCCCccceeCHHH-hcCCcCCCEEeCCCC-ccceeCH-H
Confidence 5567788888886323332211 24556788888888888776533222 345788888888887 6653211 1
Q ss_pred HHcCCCCCCccEEeeeCCCCC
Q 042559 386 LGSGTGGNLLEVLILRDCMHL 406 (547)
Q Consensus 386 L~~~~~l~~L~~L~Ls~C~~L 406 (547)
+ ...+ .|+.|+|.+++.-
T Consensus 99 ~--~~~~-~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 99 T--VQGL-SLQELVLSGNPLH 116 (347)
T ss_dssp T--TCSC-CCCEEECCSSCCC
T ss_pred H--cccC-CceEEEeeCCCcc
Confidence 1 1111 2788888775433
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.25 E-value=0.0022 Score=66.38 Aligned_cols=11 Identities=18% Similarity=-0.040 Sum_probs=5.3
Q ss_pred CCCCcEEeccC
Q 042559 364 FRKLKYVDFST 374 (547)
Q Consensus 364 ~~~L~~L~Ls~ 374 (547)
|++|+.+.+.+
T Consensus 270 c~~L~~l~l~~ 280 (401)
T 4fdw_A 270 CPELAEVTTYG 280 (401)
T ss_dssp CTTCCEEEEES
T ss_pred CCCCCEEEeCC
Confidence 44455544444
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.98 E-value=0.0052 Score=63.50 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=6.8
Q ss_pred hcCCCccEEEecC
Q 042559 306 MSCPLLERLFFES 318 (547)
Q Consensus 306 ~~~~~L~~L~L~~ 318 (547)
.+|++|+.+.+.+
T Consensus 177 ~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 177 YYCYNLKKADLSK 189 (401)
T ss_dssp TTCTTCCEEECTT
T ss_pred hCcccCCeeecCC
Confidence 4455555555543
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=89.33 E-value=0.04 Score=56.43 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=5.5
Q ss_pred CCCCccEEeee
Q 042559 422 DFKFLRHLDIS 432 (547)
Q Consensus 422 ~~~~L~~L~Ls 432 (547)
+|.+|+.+.+.
T Consensus 341 ~c~~L~~i~lp 351 (394)
T 4fs7_A 341 GCTSLSNINFP 351 (394)
T ss_dssp TCTTCCEECCC
T ss_pred CCCCCCEEEEC
Confidence 44555555554
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=84.99 E-value=0.2 Score=51.08 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=76.7
Q ss_pred hcCCCccEEEEecCC-CCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeecc--CCCHHH
Q 042559 280 SACPSLLDLEIVGLH-VELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGF--KLPDYK 356 (547)
Q Consensus 280 ~~~~~L~~L~Ls~c~-~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~--~ltd~~ 356 (547)
..|.+|+.+.+.... .+....+ ..|..|+.+.+.... +.+ .....|.+|+.+.+... .+.+.
T Consensus 250 ~~~~~l~~~~~~~~~~~i~~~~F----~~~~~l~~~~~~~~~-i~~---------~~F~~~~~L~~i~l~~~i~~I~~~- 314 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIGGSLF----YNCSGLKKVIYGSVI-VPE---------KTFYGCSSLTEVKLLDSVKFIGEE- 314 (394)
T ss_dssp TTCSSCCEEEECCTTCEECSCTT----TTCTTCCEEEECSSE-ECT---------TTTTTCTTCCEEEECTTCCEECTT-
T ss_pred cccccceeEEcCCCcceeecccc----ccccccceeccCcee-ecc---------ccccccccccccccccccceechh-
Confidence 356666666665421 1112222 455566666554321 111 23456888999988763 23322
Q ss_pred HHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCC
Q 042559 357 IRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISNREG 436 (547)
Q Consensus 357 l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~ 436 (547)
...+|.+|+.++|... ++.-+-.++..|.+ |+.+.+... ++..+- ....+|.+|+.+++..+
T Consensus 315 ---aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~---L~~i~lp~~--l~~I~~------~aF~~C~~L~~i~lp~~-- 376 (394)
T 4fs7_A 315 ---AFESCTSLVSIDLPYL--VEEIGKRSFRGCTS---LSNINFPLS--LRKIGA------NAFQGCINLKKVELPKR-- 376 (394)
T ss_dssp ---TTTTCTTCCEECCCTT--CCEECTTTTTTCTT---CCEECCCTT--CCEECT------TTBTTCTTCCEEEEEGG--
T ss_pred ---hhcCCCCCCEEEeCCc--ccEEhHHhccCCCC---CCEEEECcc--ccEehH------HHhhCCCCCCEEEECCC--
Confidence 2346899999999642 33222233444554 999988642 332211 01247999999999764
Q ss_pred CccchhhhccCCCCCc
Q 042559 437 LASEGDWYDRCFNSRI 452 (547)
Q Consensus 437 l~~~~~~l~~c~~L~~ 452 (547)
++.....+.+|++|+.
T Consensus 377 ~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 377 LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp GGGGGGGBCTTCEEEE
T ss_pred CEEhhheecCCCCCcE
Confidence 3333345677887754
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=84.10 E-value=0.13 Score=52.38 Aligned_cols=121 Identities=18% Similarity=0.293 Sum_probs=54.0
Q ss_pred hcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeecc--CCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHH
Q 042559 306 MSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGF--KLPDYKIRILLKGFRKLKYVDFSTSYSITGAFL 383 (547)
Q Consensus 306 ~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~--~ltd~~l~~l~~~~~~L~~L~Ls~c~~lt~~~l 383 (547)
.+|..|+.+.+.... .. +.. ....+|++|+.+.+... .+.+. ...+|.+|+.+.|... ++.-+-
T Consensus 262 ~~c~~L~~i~lp~~~--~~--I~~----~aF~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~ 327 (394)
T 4gt6_A 262 DSCAYLASVKMPDSV--VS--IGT----GAFMNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEG--ITQILD 327 (394)
T ss_dssp TTCSSCCEEECCTTC--CE--ECT----TTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTT--CCEECT
T ss_pred eecccccEEeccccc--ce--ecC----cccccccccccccCCCcccccCce----eecCCCCcCEEEeCCc--ccEehH
Confidence 456666666664321 10 110 13345666666666532 22221 1235667777766532 221111
Q ss_pred HHHHcCCCCCCccEEeeeC-CCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCCCCccchhhhccCCCCCccch
Q 042559 384 RNLGSGTGGNLLEVLILRD-CMHLKEVEVARFLTAVLTGDFKFLRHLDISNREGLASEGDWYDRCFNSRIIPL 455 (547)
Q Consensus 384 ~~L~~~~~l~~L~~L~Ls~-C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~~l~~~~~~l~~c~~L~~l~l 455 (547)
.++..|.+ |+.+.|.. ...+.+... .+|.+|+.+++.++.. ....+..|.+|+.+.+
T Consensus 328 ~aF~~C~~---L~~i~ip~sv~~I~~~aF---------~~C~~L~~i~~~~~~~---~~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 328 DAFAGCEQ---LERIAIPSSVTKIPESAF---------SNCTALNNIEYSGSRS---QWNAISTDSGLQNLPV 385 (394)
T ss_dssp TTTTTCTT---CCEEEECTTCCBCCGGGG---------TTCTTCCEEEESSCHH---HHHTCBCCCCC-----
T ss_pred hHhhCCCC---CCEEEECcccCEEhHhHh---------hCCCCCCEEEECCcee---ehhhhhccCCCCEEEe
Confidence 22333443 77777642 122322222 3677777777765421 1234456666655543
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=83.81 E-value=0.31 Score=49.22 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=17.4
Q ss_pred CCCCccEEeeeCCCCCccc-hhhhccCCCCCccch
Q 042559 422 DFKFLRHLDISNREGLASE-GDWYDRCFNSRIIPL 455 (547)
Q Consensus 422 ~~~~L~~L~Ls~c~~l~~~-~~~l~~c~~L~~l~l 455 (547)
+|.+|+.+.|..+ ++.. ...+.+|.+|+.+.+
T Consensus 308 ~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 308 DCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred CCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 5666777766432 3332 234566777765543
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.08 E-value=1.6 Score=44.14 Aligned_cols=123 Identities=17% Similarity=0.226 Sum_probs=57.5
Q ss_pred hcCCCccEEEEecC-CCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeecc--CCCHHH
Q 042559 280 SACPSLLDLEIVGL-HVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGF--KLPDYK 356 (547)
Q Consensus 280 ~~~~~L~~L~Ls~c-~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~--~ltd~~ 356 (547)
..|.+|+.+.+... ..+....+ .+|+.|+.+.+... ++.. .. ....+|.+|+.+.|... .+.+.
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~aF----~~c~~L~~i~l~~~--i~~I--~~----~aF~~c~~L~~i~lp~~v~~I~~~- 328 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGAF----MNCPALQDIEFSSR--ITEL--PE----SVFAGCISLKSIDIPEGITQILDD- 328 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTTT----TTCTTCCEEECCTT--CCEE--CT----TTTTTCTTCCEEECCTTCCEECTT-
T ss_pred eecccccEEecccccceecCccc----ccccccccccCCCc--cccc--Cc----eeecCCCCcCEEEeCCcccEehHh-
Confidence 45677777776542 12222223 56677777777532 2111 11 13455777777777643 23222
Q ss_pred HHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeCCCCCCHHHHHHHHHHhhcCCCCCccEEeeeC
Q 042559 357 IRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRDCMHLKEVEVARFLTAVLTGDFKFLRHLDISN 433 (547)
Q Consensus 357 l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~ 433 (547)
...+|.+|+.+.|... ++.-+-.++..|.+ |+.+++.+.. ... .. ...|.+|+.|.+..
T Consensus 329 ---aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~---L~~i~~~~~~----~~~----~~--~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 329 ---AFAGCEQLERIAIPSS--VTKIPESAFSNCTA---LNNIEYSGSR----SQW----NA--ISTDSGLQNLPVAP 387 (394)
T ss_dssp ---TTTTCTTCCEEEECTT--CCBCCGGGGTTCTT---CCEEEESSCH----HHH----HT--CBCCCCC-------
T ss_pred ---HhhCCCCCCEEEECcc--cCEEhHhHhhCCCC---CCEEEECCce----eeh----hh--hhccCCCCEEEeCC
Confidence 1235777777777542 33222233444554 7777776531 111 11 12566777776654
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=71.20 E-value=0.66 Score=46.71 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=73.0
Q ss_pred hcCCCccEEEEecC-CCCCHHHHHHHHhcCCCccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeecc--CCCHHH
Q 042559 280 SACPSLLDLEIVGL-HVELRQTLMSVSMSCPLLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGF--KLPDYK 356 (547)
Q Consensus 280 ~~~~~L~~L~Ls~c-~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~--~ltd~~ 356 (547)
..|.+|+.+.+... ..+....+ .+|..|+.+.+... ++..+- ....+|.+|+.+.+... .+..
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~f----~~~~~L~~i~lp~~--v~~I~~------~aF~~~~~l~~i~l~~~i~~i~~-- 279 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGAF----YGMKALDEIAIPKN--VTSIGS------FLLQNCTALKTLNFYAKVKTVPY-- 279 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTTT----TTCSSCCEEEECTT--CCEECT------TTTTTCTTCCEEEECCCCSEECT--
T ss_pred ccccccceeeeccceeEEccccc----cCCccceEEEcCCC--ccEeCc------cccceeehhccccccccceeccc--
Confidence 35666777766442 12222222 56677777777543 221111 14455777777777543 2211
Q ss_pred HHHHHhcCCCCcEEeccCCCCCCHHHHHHHHcCCCCCCccEEeeeC-CCCCCHHHHHHHHHHhhcCCCCCccEEeeeCCC
Q 042559 357 IRILLKGFRKLKYVDFSTSYSITGAFLRNLGSGTGGNLLEVLILRD-CMHLKEVEVARFLTAVLTGDFKFLRHLDISNRE 435 (547)
Q Consensus 357 l~~l~~~~~~L~~L~Ls~c~~lt~~~l~~L~~~~~l~~L~~L~Ls~-C~~L~~~~l~~~l~~~l~~~~~~L~~L~Ls~c~ 435 (547)
....+|++|+.+.+.++ .++.-+-.++..|.+ |+.+.|.. ...+.+... .+|.+|+.+.|..+
T Consensus 280 --~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~---L~~i~lp~~l~~I~~~aF---------~~C~~L~~i~ip~~- 343 (379)
T 4h09_A 280 --LLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVK---LSSVTLPTALKTIQVYAF---------KNCKALSTISYPKS- 343 (379)
T ss_dssp --TTTTTCTTCCEEEECCT-TCCEECTTTTTTCTT---CCEEECCTTCCEECTTTT---------TTCTTCCCCCCCTT-
T ss_pred --ccccccccccccccccc-ccceehhhhhcCCCC---CCEEEcCccccEEHHHHh---------hCCCCCCEEEECCc-
Confidence 12345778888887654 343222223334544 88888753 222333222 37888998888543
Q ss_pred CCccc-hhhhccCCCC
Q 042559 436 GLASE-GDWYDRCFNS 450 (547)
Q Consensus 436 ~l~~~-~~~l~~c~~L 450 (547)
++.. ...+.+|..+
T Consensus 344 -v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 344 -ITLIESGAFEGSSIT 358 (379)
T ss_dssp -CCEECTTTTTTSSCC
T ss_pred -cCEEchhHhhCCCCC
Confidence 4442 2345677544
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=34.05 E-value=9.5 Score=31.93 Aligned_cols=12 Identities=33% Similarity=0.518 Sum_probs=5.5
Q ss_pred CcceEEeeccCC
Q 042559 341 NLTSMALRGFKL 352 (547)
Q Consensus 341 ~L~~L~L~~~~l 352 (547)
+|++|+|++|.|
T Consensus 32 ~l~~L~Ls~N~l 43 (130)
T 3rfe_A 32 DTTELVLTGNNL 43 (130)
T ss_dssp TCSEEECTTSCC
T ss_pred CCCEEECCCCcC
Confidence 344444444433
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=33.91 E-value=37 Score=28.15 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=19.5
Q ss_pred CccEEEecCCCCCCCCcCCCcchHHHhcCCCCcceEEeecc
Q 042559 310 LLERLFFESSKTGRDDSLKSPTCVDFVNNCPNLTSMALRGF 350 (547)
Q Consensus 310 ~L~~L~L~~c~~l~~~~l~~~~l~~~~~~~~~L~~L~L~~~ 350 (547)
+|++|+|++|. ++...- ..+..+++|+.|+|.+|
T Consensus 32 ~l~~L~Ls~N~-l~~l~~------~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPP------GLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSC-CSSCCT------TTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCc-CCccCh------hhhhhccccCEEEecCC
Confidence 47777777664 222211 13445667777777765
Done!