Query 042564
Match_columns 498
No_of_seqs 344 out of 3361
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:22:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.3E-87 2.9E-92 669.4 54.9 447 20-480 1-453 (454)
2 KOG0405 Pyridine nucleotide-di 100.0 8.6E-88 1.9E-92 613.6 36.0 473 1-486 1-477 (478)
3 PLN02507 glutathione reductase 100.0 8.2E-84 1.8E-88 663.1 61.2 497 1-498 1-499 (499)
4 PLN02546 glutathione reductase 100.0 7.2E-81 1.6E-85 643.2 55.6 460 22-487 78-538 (558)
5 TIGR01423 trypano_reduc trypan 100.0 5.1E-80 1.1E-84 630.8 55.8 467 22-490 2-480 (486)
6 TIGR01421 gluta_reduc_1 glutat 100.0 9.6E-80 2.1E-84 627.6 56.3 444 22-480 1-449 (450)
7 TIGR01424 gluta_reduc_2 glutat 100.0 3.6E-79 7.8E-84 624.3 56.4 444 23-480 2-445 (446)
8 PRK06116 glutathione reductase 100.0 1.2E-78 2.6E-83 622.5 56.1 445 20-480 1-449 (450)
9 KOG1335 Dihydrolipoamide dehyd 100.0 3.6E-79 7.8E-84 564.1 42.1 449 22-484 38-498 (506)
10 PTZ00058 glutathione reductase 100.0 9.4E-78 2E-82 619.5 55.3 444 22-481 47-557 (561)
11 PRK06467 dihydrolipoamide dehy 100.0 3.1E-77 6.8E-82 612.5 58.2 450 20-482 1-456 (471)
12 PRK06370 mercuric reductase; V 100.0 3.4E-77 7.4E-82 613.5 58.2 447 20-482 2-454 (463)
13 TIGR01438 TGR thioredoxin and 100.0 2.1E-77 4.7E-82 613.3 56.0 459 23-483 2-470 (484)
14 PRK07846 mycothione reductase; 100.0 9.4E-77 2E-81 605.1 55.9 440 23-481 1-446 (451)
15 PRK06115 dihydrolipoamide dehy 100.0 4.4E-76 9.5E-81 603.8 57.8 444 23-482 3-457 (466)
16 PRK07818 dihydrolipoamide dehy 100.0 2.1E-75 4.6E-80 600.2 59.2 446 22-482 3-457 (466)
17 PTZ00153 lipoamide dehydrogena 100.0 8.9E-76 1.9E-80 611.7 56.9 454 23-488 116-657 (659)
18 PRK05249 soluble pyridine nucl 100.0 3.2E-75 7E-80 599.7 58.6 449 22-482 4-454 (461)
19 PRK07845 flavoprotein disulfid 100.0 3.9E-75 8.5E-80 596.8 58.5 446 24-480 2-455 (466)
20 PRK14727 putative mercuric red 100.0 3.8E-75 8.3E-80 598.9 58.2 447 22-482 15-465 (479)
21 TIGR03452 mycothione_red mycot 100.0 1.8E-75 3.9E-80 596.5 54.6 440 23-481 2-449 (452)
22 PRK14694 putative mercuric red 100.0 6.8E-75 1.5E-79 596.3 57.2 445 22-482 5-454 (468)
23 PRK05976 dihydrolipoamide dehy 100.0 6.1E-74 1.3E-78 590.3 59.2 450 20-482 1-463 (472)
24 TIGR02053 MerA mercuric reduct 100.0 5.5E-74 1.2E-78 590.1 57.2 443 24-482 1-449 (463)
25 PRK06912 acoL dihydrolipoamide 100.0 8.6E-74 1.9E-78 586.6 57.7 443 25-481 2-448 (458)
26 PRK06416 dihydrolipoamide dehy 100.0 1.1E-73 2.4E-78 588.1 57.8 444 22-482 3-453 (462)
27 PRK13748 putative mercuric red 100.0 1.2E-73 2.5E-78 601.9 57.3 446 22-482 97-547 (561)
28 PTZ00052 thioredoxin reductase 100.0 6.2E-74 1.3E-78 590.5 52.7 456 21-482 3-479 (499)
29 PRK08010 pyridine nucleotide-d 100.0 2.5E-73 5.5E-78 581.6 56.4 431 23-482 3-438 (441)
30 PRK06327 dihydrolipoamide dehy 100.0 9.4E-73 2E-77 581.0 57.8 454 20-481 1-465 (475)
31 PRK06292 dihydrolipoamide dehy 100.0 1.4E-72 2.9E-77 580.1 56.3 441 22-482 2-451 (460)
32 PRK07251 pyridine nucleotide-d 100.0 1.7E-71 3.7E-76 567.6 56.2 430 23-481 3-436 (438)
33 TIGR01350 lipoamide_DH dihydro 100.0 1.1E-70 2.4E-75 566.3 58.1 447 23-482 1-452 (461)
34 KOG4716 Thioredoxin reductase 100.0 2.5E-71 5.5E-76 503.8 33.9 458 20-479 16-486 (503)
35 PRK13512 coenzyme A disulfide 100.0 1.8E-57 3.9E-62 463.0 41.1 403 25-483 3-433 (438)
36 PRK09564 coenzyme A disulfide 100.0 3.1E-56 6.8E-61 457.0 40.3 410 25-484 2-440 (444)
37 TIGR03385 CoA_CoA_reduc CoA-di 100.0 4.3E-49 9.4E-54 401.7 35.1 340 131-477 53-420 (427)
38 PRK14989 nitrite reductase sub 100.0 3E-45 6.6E-50 394.3 39.0 388 24-477 4-418 (847)
39 PRK04965 NADH:flavorubredoxin 100.0 9.3E-41 2E-45 334.7 34.3 352 24-446 3-368 (377)
40 PRK09754 phenylpropionate diox 100.0 6.7E-40 1.5E-44 330.3 37.8 360 23-460 3-385 (396)
41 TIGR02374 nitri_red_nirB nitri 100.0 4.6E-40 9.9E-45 355.1 35.1 369 26-465 1-387 (785)
42 PTZ00318 NADH dehydrogenase-li 100.0 1.6E-36 3.5E-41 307.8 32.3 282 23-360 10-345 (424)
43 COG1252 Ndh NADH dehydrogenase 100.0 1.3E-36 2.8E-41 295.8 27.0 282 23-360 3-329 (405)
44 TIGR01292 TRX_reduct thioredox 100.0 1.6E-35 3.4E-40 288.5 29.5 283 24-359 1-297 (300)
45 PRK10262 thioredoxin reductase 100.0 1.2E-34 2.6E-39 284.4 28.8 288 21-359 4-311 (321)
46 TIGR03143 AhpF_homolog putativ 100.0 2.1E-34 4.5E-39 301.0 30.9 285 20-359 1-305 (555)
47 TIGR03140 AhpF alkyl hydropero 100.0 4.2E-35 9.1E-40 304.0 24.8 284 22-360 211-510 (515)
48 COG1251 NirB NAD(P)H-nitrite r 100.0 7.2E-35 1.6E-39 292.7 23.6 372 24-466 4-393 (793)
49 TIGR03169 Nterm_to_SelD pyridi 100.0 3.6E-34 7.9E-39 286.2 27.8 278 25-359 1-307 (364)
50 TIGR01316 gltA glutamate synth 100.0 4.3E-34 9.3E-39 291.5 25.2 275 22-359 132-446 (449)
51 KOG1336 Monodehydroascorbate/f 100.0 2.4E-33 5.3E-38 270.0 28.3 364 23-464 74-463 (478)
52 PRK15317 alkyl hydroperoxide r 100.0 1.3E-33 2.9E-38 293.3 26.7 284 22-360 210-509 (517)
53 COG0492 TrxB Thioredoxin reduc 100.0 5.4E-33 1.2E-37 264.9 27.3 279 22-359 2-297 (305)
54 PRK12831 putative oxidoreducta 100.0 2.9E-33 6.3E-38 285.8 26.9 277 22-359 139-457 (464)
55 PRK09853 putative selenate red 100.0 1.3E-31 2.8E-36 286.6 28.8 275 22-362 538-841 (1019)
56 PRK12770 putative glutamate sy 100.0 3.2E-31 6.9E-36 263.0 28.2 289 17-360 12-347 (352)
57 PRK11749 dihydropyrimidine deh 100.0 1.8E-31 3.9E-36 273.8 25.6 275 22-359 139-448 (457)
58 PRK12778 putative bifunctional 100.0 7.9E-31 1.7E-35 283.8 27.2 274 22-359 430-746 (752)
59 TIGR03315 Se_ygfK putative sel 100.0 1.4E-30 3.1E-35 280.2 28.4 274 22-362 536-839 (1012)
60 PRK12810 gltD glutamate syntha 100.0 1.2E-30 2.7E-35 268.0 25.9 280 22-359 142-461 (471)
61 PRK12779 putative bifunctional 100.0 1.8E-30 3.9E-35 282.6 28.2 274 23-359 306-623 (944)
62 PRK12814 putative NADPH-depend 100.0 1.2E-29 2.6E-34 269.2 27.8 273 23-359 193-497 (652)
63 PRK12775 putative trifunctiona 100.0 3.6E-29 7.9E-34 274.8 26.4 276 23-359 430-751 (1006)
64 TIGR01318 gltD_gamma_fam gluta 100.0 1.1E-28 2.4E-33 252.6 26.5 275 22-359 140-462 (467)
65 PRK12769 putative oxidoreducta 100.0 1.4E-28 3E-33 262.3 26.8 275 22-359 326-648 (654)
66 TIGR01317 GOGAT_sm_gam glutama 100.0 1.9E-27 4.1E-32 244.4 26.7 278 23-359 143-475 (485)
67 COG0446 HcaD Uncharacterized N 100.0 9.3E-27 2E-31 237.2 30.6 323 134-468 65-411 (415)
68 KOG2495 NADH-dehydrogenase (ub 100.0 1.5E-27 3.2E-32 225.6 21.2 285 22-358 54-392 (491)
69 PRK12809 putative oxidoreducta 100.0 3.9E-27 8.4E-32 250.1 26.4 275 23-360 310-632 (639)
70 PRK13984 putative oxidoreducta 100.0 3.4E-27 7.4E-32 250.3 25.2 274 22-359 282-598 (604)
71 TIGR01372 soxA sarcosine oxida 99.9 1E-25 2.2E-30 249.3 31.4 281 18-359 158-468 (985)
72 KOG0404 Thioredoxin reductase 99.9 3.2E-26 6.9E-31 198.0 18.9 269 23-340 8-295 (322)
73 PLN02852 ferredoxin-NADP+ redu 99.9 1.3E-25 2.8E-30 227.2 26.4 282 22-360 25-419 (491)
74 PLN02172 flavin-containing mon 99.9 6.1E-26 1.3E-30 230.6 24.1 306 20-362 7-352 (461)
75 COG3634 AhpF Alkyl hydroperoxi 99.9 3.9E-27 8.5E-32 216.3 13.6 279 23-359 211-511 (520)
76 PRK12771 putative glutamate sy 99.9 2.5E-24 5.4E-29 226.3 27.2 272 22-358 136-439 (564)
77 KOG1346 Programmed cell death 99.9 1.7E-24 3.7E-29 203.2 17.9 225 134-363 269-521 (659)
78 PF02852 Pyr_redox_dim: Pyridi 99.9 5.9E-24 1.3E-28 173.6 13.4 110 371-481 1-110 (110)
79 PF00743 FMO-like: Flavin-bind 99.9 2.2E-21 4.7E-26 199.8 23.4 306 24-362 2-396 (531)
80 PF07992 Pyr_redox_2: Pyridine 99.9 1.8E-21 4E-26 177.8 10.2 184 25-340 1-199 (201)
81 COG0493 GltD NADPH-dependent g 99.9 6.6E-21 1.4E-25 191.1 15.0 279 24-359 124-447 (457)
82 PRK05329 anaerobic glycerol-3- 99.8 1.6E-17 3.4E-22 166.1 25.8 153 205-360 219-418 (422)
83 PRK06567 putative bifunctional 99.8 7.6E-18 1.6E-22 178.9 21.4 280 22-358 382-765 (1028)
84 PF13738 Pyr_redox_3: Pyridine 99.8 8.6E-18 1.9E-22 153.8 15.3 188 27-235 1-201 (203)
85 KOG0399 Glutamate synthase [Am 99.8 2.8E-18 6.1E-23 177.7 12.3 275 23-358 1785-2115(2142)
86 PF13434 K_oxygenase: L-lysine 99.8 3.6E-17 7.9E-22 160.0 18.0 256 23-297 2-340 (341)
87 COG2072 TrkA Predicted flavopr 99.7 9.7E-18 2.1E-22 170.0 13.8 189 20-236 5-210 (443)
88 KOG2755 Oxidoreductase [Genera 99.7 8.6E-17 1.9E-21 143.2 16.4 184 150-340 79-322 (334)
89 KOG1399 Flavin-containing mono 99.7 4.7E-16 1E-20 155.4 20.6 299 22-362 5-333 (448)
90 KOG3851 Sulfide:quinone oxidor 99.7 9.1E-17 2E-21 146.9 11.7 282 22-359 38-357 (446)
91 COG3486 IucD Lysine/ornithine 99.7 6E-15 1.3E-19 140.4 21.4 324 20-362 2-414 (436)
92 COG1148 HdrA Heterodisulfide r 99.7 2.7E-16 5.9E-21 151.5 11.0 196 158-358 293-540 (622)
93 PTZ00188 adrenodoxin reductase 99.6 2.6E-13 5.7E-18 135.6 21.7 254 23-341 39-417 (506)
94 KOG1800 Ferredoxin/adrenodoxin 99.5 7.2E-13 1.6E-17 124.5 17.4 276 23-359 20-403 (468)
95 PF00070 Pyr_redox: Pyridine n 99.5 4.1E-13 8.9E-18 102.7 11.6 80 203-282 1-80 (80)
96 COG2081 Predicted flavoprotein 99.5 3E-12 6.5E-17 122.5 16.8 81 219-300 87-171 (408)
97 COG0029 NadB Aspartate oxidase 99.4 6.2E-12 1.3E-16 123.1 15.7 321 25-362 9-397 (518)
98 PRK07843 3-ketosteroid-delta-1 99.4 4E-12 8.7E-17 133.4 15.5 106 197-302 156-274 (557)
99 TIGR03378 glycerol3P_GlpB glyc 99.4 4.8E-10 1E-14 111.1 26.1 150 206-359 229-419 (419)
100 PRK06134 putative FAD-binding 99.4 9.5E-12 2.1E-16 131.3 15.0 247 20-300 9-280 (581)
101 PRK12842 putative succinate de 99.4 1.2E-11 2.5E-16 130.6 15.5 111 191-301 147-278 (574)
102 PRK13800 putative oxidoreducta 99.3 3E-11 6.5E-16 133.5 18.0 66 294-359 337-406 (897)
103 PRK07804 L-aspartate oxidase; 99.3 1.8E-11 3.8E-16 128.1 15.4 34 21-54 14-47 (541)
104 COG4529 Uncharacterized protei 99.3 4.5E-10 9.9E-15 110.5 23.2 199 23-234 1-231 (474)
105 PRK08275 putative oxidoreducta 99.3 1.1E-11 2.5E-16 130.1 13.1 157 22-178 8-201 (554)
106 TIGR00551 nadB L-aspartate oxi 99.3 4.1E-11 8.9E-16 124.2 16.5 46 315-360 333-387 (488)
107 PRK08401 L-aspartate oxidase; 99.3 1.4E-11 3E-16 126.8 12.6 150 24-178 2-176 (466)
108 PRK06263 sdhA succinate dehydr 99.3 3.8E-11 8.2E-16 126.0 15.8 46 315-360 348-401 (543)
109 PRK06854 adenylylsulfate reduc 99.3 4.7E-11 1E-15 126.4 15.5 43 317-359 371-428 (608)
110 PRK09231 fumarate reductase fl 99.3 1.3E-10 2.8E-15 122.6 18.5 156 22-178 3-197 (582)
111 PRK09077 L-aspartate oxidase; 99.3 3.6E-10 7.9E-15 118.3 19.6 46 315-360 353-407 (536)
112 PRK08071 L-aspartate oxidase; 99.2 1.9E-10 4.2E-15 119.5 17.1 31 23-54 3-33 (510)
113 TIGR01176 fum_red_Fp fumarate 99.2 1.5E-10 3.3E-15 121.7 15.9 156 22-178 2-196 (580)
114 PLN02815 L-aspartate oxidase 99.2 7.9E-11 1.7E-15 123.6 13.7 35 19-54 25-59 (594)
115 PRK07573 sdhA succinate dehydr 99.2 1.6E-10 3.4E-15 122.9 16.0 33 22-54 34-66 (640)
116 PRK05945 sdhA succinate dehydr 99.2 1.1E-10 2.4E-15 123.2 13.8 33 22-54 2-36 (575)
117 PRK06175 L-aspartate oxidase; 99.2 8.6E-11 1.9E-15 119.6 12.5 33 21-54 2-34 (433)
118 PRK06069 sdhA succinate dehydr 99.2 6.5E-11 1.4E-15 125.1 11.7 33 22-54 4-39 (577)
119 PLN00128 Succinate dehydrogena 99.2 4.3E-10 9.3E-15 119.2 17.6 155 22-177 49-250 (635)
120 PRK08205 sdhA succinate dehydr 99.2 5E-10 1.1E-14 118.3 18.0 155 21-177 3-206 (583)
121 TIGR00136 gidA glucose-inhibit 99.2 9.7E-10 2.1E-14 113.2 18.9 136 24-177 1-154 (617)
122 PRK06452 sdhA succinate dehydr 99.2 1.4E-10 3E-15 122.0 12.6 33 22-54 4-36 (566)
123 PF03486 HI0933_like: HI0933-l 99.2 1.8E-10 3.9E-15 115.2 12.7 85 215-300 81-168 (409)
124 PRK09078 sdhA succinate dehydr 99.2 3.5E-09 7.6E-14 112.1 22.5 33 22-54 11-43 (598)
125 PRK07395 L-aspartate oxidase; 99.2 3.9E-10 8.4E-15 118.0 15.0 33 21-54 7-39 (553)
126 TIGR01812 sdhA_frdA_Gneg succi 99.2 7.3E-10 1.6E-14 117.2 16.8 30 25-54 1-30 (566)
127 TIGR02061 aprA adenosine phosp 99.2 1E-09 2.2E-14 115.4 17.6 32 25-56 1-36 (614)
128 COG3075 GlpB Anaerobic glycero 99.2 2.2E-09 4.7E-14 99.6 17.1 144 214-360 231-415 (421)
129 PRK07803 sdhA succinate dehydr 99.1 8.1E-10 1.8E-14 117.4 16.2 34 22-55 7-40 (626)
130 PRK08641 sdhA succinate dehydr 99.1 1.6E-09 3.4E-14 114.5 18.0 32 23-54 3-34 (589)
131 PRK09897 hypothetical protein; 99.1 5.3E-09 1.1E-13 108.0 21.2 185 24-223 2-213 (534)
132 PRK08626 fumarate reductase fl 99.1 2.2E-09 4.8E-14 114.4 19.0 154 23-177 5-220 (657)
133 PRK07512 L-aspartate oxidase; 99.1 1.6E-09 3.4E-14 112.8 17.1 46 315-360 341-395 (513)
134 PRK07057 sdhA succinate dehydr 99.1 1.9E-09 4.1E-14 113.9 14.8 33 22-54 11-43 (591)
135 PRK05192 tRNA uridine 5-carbox 99.0 1.3E-09 2.7E-14 112.7 11.9 138 21-176 2-156 (618)
136 TIGR01811 sdhA_Bsu succinate d 99.0 3.1E-09 6.6E-14 112.5 13.1 29 26-54 1-29 (603)
137 TIGR02028 ChlP geranylgeranyl 99.0 2.2E-09 4.8E-14 108.4 10.2 146 24-180 1-163 (398)
138 PRK11728 hydroxyglutarate oxid 98.9 5.7E-08 1.2E-12 98.2 19.3 58 241-299 148-205 (393)
139 PRK12845 3-ketosteroid-delta-1 98.9 7.2E-08 1.6E-12 101.2 20.2 69 14-92 7-78 (564)
140 PF01266 DAO: FAD dependent ox 98.9 5.3E-08 1.2E-12 96.9 18.1 59 241-300 146-205 (358)
141 PRK10157 putative oxidoreducta 98.9 8.8E-08 1.9E-12 97.7 19.4 56 243-298 109-164 (428)
142 PRK12409 D-amino acid dehydrog 98.9 2.6E-07 5.7E-12 94.0 21.6 57 242-298 197-258 (410)
143 COG0579 Predicted dehydrogenas 98.9 7.2E-08 1.6E-12 95.8 16.7 59 242-300 153-213 (429)
144 PRK06847 hypothetical protein; 98.9 8.8E-08 1.9E-12 96.3 17.3 60 242-301 107-166 (375)
145 PRK08773 2-octaprenyl-3-methyl 98.9 7.6E-08 1.6E-12 97.4 16.8 60 242-301 113-172 (392)
146 TIGR00275 flavoprotein, HI0933 98.9 4.3E-08 9.3E-13 99.0 14.6 81 216-298 78-160 (400)
147 PRK08163 salicylate hydroxylas 98.9 1.2E-07 2.6E-12 96.1 17.8 58 243-300 110-168 (396)
148 TIGR01292 TRX_reduct thioredox 98.8 5.3E-08 1.2E-12 94.6 14.4 99 203-302 2-116 (300)
149 COG0644 FixC Dehydrogenases (f 98.8 8.6E-09 1.9E-13 104.1 8.4 33 22-54 2-34 (396)
150 PRK11259 solA N-methyltryptoph 98.8 2.3E-07 5.1E-12 93.2 18.5 57 242-299 149-205 (376)
151 TIGR03329 Phn_aa_oxid putative 98.8 2.3E-07 5.1E-12 95.7 18.8 57 241-299 182-238 (460)
152 PLN02463 lycopene beta cyclase 98.8 6.3E-08 1.4E-12 98.5 14.0 142 22-179 27-171 (447)
153 PRK04176 ribulose-1,5-biphosph 98.8 6.5E-08 1.4E-12 91.2 13.1 33 22-54 24-56 (257)
154 TIGR01377 soxA_mon sarcosine o 98.8 5.2E-07 1.1E-11 90.9 20.2 57 241-298 144-200 (380)
155 COG0654 UbiH 2-polyprenyl-6-me 98.8 1.4E-07 3.1E-12 95.0 15.9 59 242-300 104-164 (387)
156 PLN00093 geranylgeranyl diphos 98.8 4.2E-08 9.2E-13 100.2 11.9 33 22-54 38-70 (450)
157 PRK09126 hypothetical protein; 98.8 3.1E-07 6.6E-12 92.9 17.8 58 244-301 112-170 (392)
158 PRK05714 2-octaprenyl-3-methyl 98.8 2E-07 4.3E-12 94.8 16.4 58 243-300 113-170 (405)
159 TIGR01790 carotene-cycl lycope 98.8 5.4E-08 1.2E-12 98.3 11.9 132 25-177 1-141 (388)
160 PRK06481 fumarate reductase fl 98.8 7.8E-08 1.7E-12 100.1 13.2 34 21-54 59-92 (506)
161 PRK10015 oxidoreductase; Provi 98.7 1.5E-07 3.2E-12 95.9 14.4 57 244-300 110-166 (429)
162 TIGR02032 GG-red-SF geranylger 98.7 4E-08 8.6E-13 95.1 9.5 31 24-54 1-31 (295)
163 COG1053 SdhA Succinate dehydro 98.7 2.8E-07 6E-12 95.9 16.2 35 20-54 3-37 (562)
164 PTZ00139 Succinate dehydrogena 98.7 1.4E-07 3E-12 100.3 14.1 155 22-177 28-229 (617)
165 TIGR00292 thiazole biosynthesi 98.7 2.1E-07 4.6E-12 87.4 13.0 33 22-54 20-52 (254)
166 PRK00711 D-amino acid dehydrog 98.7 1.1E-06 2.4E-11 89.6 19.4 56 242-298 201-257 (416)
167 PRK08013 oxidoreductase; Provi 98.7 6.7E-07 1.5E-11 90.6 17.6 58 243-300 112-170 (400)
168 PF12831 FAD_oxidored: FAD dep 98.7 1.9E-08 4.2E-13 102.4 6.4 137 25-175 1-148 (428)
169 PRK08274 tricarballylate dehyd 98.7 1.3E-07 2.8E-12 97.8 12.2 35 20-54 1-35 (466)
170 PRK08849 2-octaprenyl-3-methyl 98.7 6.5E-07 1.4E-11 90.3 16.8 58 244-301 112-170 (384)
171 PLN02661 Putative thiazole syn 98.7 1.3E-07 2.8E-12 91.4 11.0 32 23-54 92-124 (357)
172 PF01494 FAD_binding_3: FAD bi 98.7 8.4E-07 1.8E-11 88.2 17.1 60 242-301 111-175 (356)
173 COG2509 Uncharacterized FAD-de 98.7 6E-07 1.3E-11 87.6 15.1 82 220-301 150-233 (486)
174 PF00890 FAD_binding_2: FAD bi 98.7 1.4E-07 3.1E-12 96.2 11.7 30 25-54 1-30 (417)
175 PRK07494 2-octaprenyl-6-methox 98.7 1.5E-06 3.3E-11 87.8 18.9 58 242-300 111-169 (388)
176 PRK13977 myosin-cross-reactive 98.7 3.3E-07 7.1E-12 94.1 13.9 91 211-301 192-296 (576)
177 PRK07588 hypothetical protein; 98.7 8.5E-07 1.8E-11 89.7 17.0 58 243-301 104-161 (391)
178 TIGR02023 BchP-ChlP geranylger 98.7 1.1E-07 2.5E-12 95.8 10.6 31 24-54 1-31 (388)
179 PRK12839 hypothetical protein; 98.7 1.1E-06 2.5E-11 92.5 18.4 58 20-86 5-65 (572)
180 PRK07333 2-octaprenyl-6-methox 98.7 6.6E-07 1.4E-11 90.9 16.2 59 242-300 111-169 (403)
181 PF01134 GIDA: Glucose inhibit 98.7 1.3E-08 2.8E-13 99.9 3.4 126 25-175 1-150 (392)
182 PRK08020 ubiF 2-octaprenyl-3-m 98.7 6.1E-07 1.3E-11 90.7 15.7 58 243-300 113-171 (391)
183 PRK06834 hypothetical protein; 98.7 2.3E-07 4.9E-12 96.1 12.6 143 23-181 3-160 (488)
184 PTZ00383 malate:quinone oxidor 98.7 6.9E-07 1.5E-11 92.0 16.0 57 242-299 211-274 (497)
185 PRK06184 hypothetical protein; 98.7 1.1E-06 2.3E-11 91.9 17.7 58 243-300 110-170 (502)
186 PRK08850 2-octaprenyl-6-methox 98.6 1.5E-06 3.2E-11 88.4 18.0 57 244-300 113-170 (405)
187 PRK07608 ubiquinone biosynthes 98.6 1.9E-07 4.1E-12 94.3 11.3 32 23-54 5-36 (388)
188 TIGR02734 crtI_fam phytoene de 98.6 4.3E-07 9.3E-12 95.0 14.0 57 242-298 219-276 (502)
189 PRK08958 sdhA succinate dehydr 98.6 4.5E-07 9.7E-12 95.9 13.8 154 23-177 7-206 (588)
190 PLN02697 lycopene epsilon cycl 98.6 5.2E-07 1.1E-11 93.3 13.9 33 22-54 107-139 (529)
191 PRK07121 hypothetical protein; 98.6 1.5E-06 3.3E-11 90.5 17.4 34 21-54 18-51 (492)
192 PRK07364 2-octaprenyl-6-methox 98.6 2.2E-07 4.7E-12 94.8 10.8 42 13-54 8-49 (415)
193 PTZ00363 rab-GDP dissociation 98.6 5.4E-07 1.2E-11 91.4 13.2 60 241-300 231-292 (443)
194 PRK01747 mnmC bifunctional tRN 98.6 1.7E-06 3.6E-11 93.4 17.1 58 241-299 407-464 (662)
195 TIGR01988 Ubi-OHases Ubiquinon 98.6 2.1E-06 4.5E-11 86.6 16.8 59 242-300 106-165 (385)
196 PRK12844 3-ketosteroid-delta-1 98.6 1.4E-06 3.1E-11 91.7 15.9 45 22-75 5-49 (557)
197 PRK13369 glycerol-3-phosphate 98.6 8.6E-07 1.9E-11 92.4 13.8 58 241-298 154-215 (502)
198 PF05834 Lycopene_cycl: Lycope 98.6 2E-07 4.3E-12 93.4 8.5 138 25-178 1-143 (374)
199 PRK07045 putative monooxygenas 98.5 1.2E-06 2.5E-11 88.6 14.2 59 243-301 107-168 (388)
200 PRK11445 putative oxidoreducta 98.5 6.1E-07 1.3E-11 89.2 11.8 31 23-54 1-31 (351)
201 TIGR01813 flavo_cyto_c flavocy 98.5 6E-07 1.3E-11 92.2 11.8 30 25-54 1-31 (439)
202 PRK05868 hypothetical protein; 98.5 5E-06 1.1E-10 83.3 17.7 58 243-301 106-163 (372)
203 TIGR03364 HpnW_proposed FAD de 98.5 2.8E-06 6.1E-11 85.0 15.8 54 241-299 144-198 (365)
204 TIGR00562 proto_IX_ox protopor 98.5 1.3E-06 2.9E-11 90.4 13.8 40 257-296 238-277 (462)
205 PRK08132 FAD-dependent oxidore 98.5 5.1E-06 1.1E-10 87.8 18.3 58 243-300 126-187 (547)
206 TIGR01350 lipoamide_DH dihydro 98.5 1.5E-06 3.2E-11 90.0 13.5 99 24-180 171-272 (461)
207 PRK07233 hypothetical protein; 98.5 2.2E-06 4.7E-11 88.0 14.7 56 242-297 198-253 (434)
208 PF13450 NAD_binding_8: NAD(P) 98.5 2E-07 4.4E-12 68.2 4.9 36 28-72 1-36 (68)
209 PRK06185 hypothetical protein; 98.5 4E-06 8.8E-11 85.2 16.2 58 243-300 109-171 (407)
210 PF13454 NAD_binding_9: FAD-NA 98.5 4.4E-06 9.5E-11 72.6 13.8 27 27-53 1-32 (156)
211 PRK05257 malate:quinone oxidor 98.5 6E-06 1.3E-10 85.3 17.1 59 241-299 182-247 (494)
212 TIGR01373 soxB sarcosine oxida 98.5 4E-06 8.7E-11 85.2 15.7 55 242-297 183-239 (407)
213 PRK06617 2-octaprenyl-6-methox 98.5 1.2E-05 2.7E-10 80.6 18.9 59 242-301 104-163 (374)
214 PRK07190 hypothetical protein; 98.5 1.3E-06 2.8E-11 90.4 12.0 33 22-54 4-36 (487)
215 PRK15317 alkyl hydroperoxide r 98.4 3.1E-06 6.8E-11 88.6 14.3 101 201-301 211-325 (517)
216 PF01946 Thi4: Thi4 family; PD 98.4 2E-07 4.3E-12 82.7 4.4 33 22-54 16-48 (230)
217 TIGR03140 AhpF alkyl hydropero 98.4 3.6E-06 7.8E-11 88.0 14.6 101 201-301 212-326 (515)
218 PRK12834 putative FAD-binding 98.4 3.8E-06 8.3E-11 88.5 14.9 35 20-54 1-35 (549)
219 COG0665 DadA Glycine/D-amino a 98.4 5.8E-06 1.3E-10 83.5 15.7 58 241-299 155-213 (387)
220 PRK12266 glpD glycerol-3-phosp 98.4 5.9E-06 1.3E-10 86.1 15.6 35 20-54 3-37 (508)
221 KOG2820 FAD-dependent oxidored 98.4 8.3E-06 1.8E-10 76.6 14.6 37 19-55 3-39 (399)
222 PRK08244 hypothetical protein; 98.4 1.8E-06 3.9E-11 90.1 11.5 32 23-54 2-33 (493)
223 PRK12843 putative FAD-binding 98.4 1.7E-05 3.7E-10 84.0 18.9 59 241-299 220-283 (578)
224 PRK06183 mhpA 3-(3-hydroxyphen 98.4 2.2E-06 4.7E-11 90.3 12.1 34 21-54 8-41 (538)
225 PRK08243 4-hydroxybenzoate 3-m 98.4 1.8E-06 3.9E-11 87.3 11.0 32 23-54 2-33 (392)
226 PF13738 Pyr_redox_3: Pyridine 98.4 3.6E-06 7.8E-11 76.7 11.5 97 205-301 1-143 (203)
227 PRK13339 malate:quinone oxidor 98.4 1.1E-05 2.3E-10 83.0 16.0 58 242-299 184-248 (497)
228 PRK05732 2-octaprenyl-6-methox 98.4 1.4E-06 3E-11 88.2 9.6 33 22-54 2-37 (395)
229 TIGR01320 mal_quin_oxido malat 98.4 7E-06 1.5E-10 84.7 14.6 59 241-299 177-241 (483)
230 PRK12835 3-ketosteroid-delta-1 98.4 9.7E-06 2.1E-10 85.8 16.0 36 19-54 7-42 (584)
231 PTZ00306 NADH-dependent fumara 98.4 3.3E-06 7.2E-11 96.1 13.2 33 22-54 408-440 (1167)
232 TIGR01989 COQ6 Ubiquinone bios 98.4 1.6E-05 3.6E-10 81.4 17.2 60 242-301 117-186 (437)
233 COG1232 HemY Protoporphyrinoge 98.4 5.7E-06 1.2E-10 83.0 13.3 50 244-296 217-266 (444)
234 PLN02985 squalene monooxygenas 98.4 2.3E-06 4.9E-11 89.1 10.8 37 18-54 38-74 (514)
235 TIGR01984 UbiH 2-polyprenyl-6- 98.3 2.4E-06 5.2E-11 86.1 10.5 30 25-54 1-31 (382)
236 PRK12416 protoporphyrinogen ox 98.3 9E-06 2E-10 84.1 14.9 51 243-295 227-277 (463)
237 COG1635 THI4 Ribulose 1,5-bisp 98.3 4.1E-07 8.9E-12 80.2 4.1 32 23-54 30-61 (262)
238 PLN02172 flavin-containing mon 98.3 1.5E-05 3.3E-10 81.6 16.1 102 201-302 10-179 (461)
239 COG1231 Monoamine oxidase [Ami 98.3 2.2E-06 4.8E-11 84.2 9.4 42 254-295 218-259 (450)
240 PRK06126 hypothetical protein; 98.3 3.7E-06 8E-11 88.9 12.0 33 22-54 6-38 (545)
241 PRK09564 coenzyme A disulfide 98.3 3.9E-06 8.5E-11 86.4 11.8 101 202-302 1-119 (444)
242 PRK11101 glpA sn-glycerol-3-ph 98.3 1.4E-05 3E-10 84.1 16.1 58 241-298 148-211 (546)
243 COG0445 GidA Flavin-dependent 98.3 6.5E-07 1.4E-11 89.2 5.6 144 21-175 2-156 (621)
244 PRK07236 hypothetical protein; 98.3 5.2E-06 1.1E-10 83.8 12.3 101 201-301 6-157 (386)
245 PRK09754 phenylpropionate diox 98.3 4.1E-06 8.8E-11 84.8 11.2 98 201-300 3-114 (396)
246 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 4.3E-06 9.3E-11 84.4 11.0 32 23-54 2-33 (390)
247 PRK06996 hypothetical protein; 98.3 2E-05 4.3E-10 79.8 15.7 56 242-297 115-173 (398)
248 PRK07251 pyridine nucleotide-d 98.3 1E-05 2.3E-10 83.0 13.8 97 24-181 158-257 (438)
249 PRK07236 hypothetical protein; 98.3 1.3E-05 2.7E-10 81.0 14.2 32 23-54 6-37 (386)
250 COG1233 Phytoene dehydrogenase 98.2 1E-06 2.2E-11 91.3 5.1 55 242-296 224-279 (487)
251 TIGR00292 thiazole biosynthesi 98.2 3.8E-05 8.2E-10 72.2 14.8 159 202-360 22-251 (254)
252 PRK05976 dihydrolipoamide dehy 98.2 1.3E-05 2.7E-10 83.2 12.4 100 24-181 181-285 (472)
253 PLN02464 glycerol-3-phosphate 98.2 1.6E-05 3.4E-10 84.8 13.1 58 241-298 231-296 (627)
254 PRK04176 ribulose-1,5-biphosph 98.2 5.9E-05 1.3E-09 71.1 15.5 158 202-360 26-252 (257)
255 PRK07538 hypothetical protein; 98.2 5.8E-05 1.3E-09 76.9 16.4 58 243-300 103-167 (413)
256 PRK06753 hypothetical protein; 98.2 1.3E-05 2.8E-10 80.5 11.2 30 25-54 2-31 (373)
257 TIGR01789 lycopene_cycl lycope 98.2 6.5E-06 1.4E-10 82.2 8.9 30 25-54 1-32 (370)
258 PLN02927 antheraxanthin epoxid 98.2 0.00012 2.5E-09 77.7 18.4 56 243-300 195-250 (668)
259 PRK07208 hypothetical protein; 98.2 2.1E-06 4.6E-11 89.2 5.5 56 242-297 218-279 (479)
260 TIGR02032 GG-red-SF geranylger 98.2 3.1E-05 6.7E-10 74.8 13.1 97 203-299 2-149 (295)
261 KOG0399 Glutamate synthase [Am 98.2 6.1E-05 1.3E-09 80.6 15.7 184 201-397 1785-1991(2142)
262 PRK06834 hypothetical protein; 98.1 4E-05 8.6E-10 79.5 14.0 100 202-301 4-159 (488)
263 TIGR00031 UDP-GALP_mutase UDP- 98.1 2.9E-06 6.2E-11 84.1 5.3 42 24-74 2-43 (377)
264 PF00070 Pyr_redox: Pyridine n 98.1 2.8E-05 6E-10 59.1 9.3 30 25-54 1-30 (80)
265 PTZ00318 NADH dehydrogenase-li 98.1 2.2E-05 4.9E-10 80.1 11.5 101 201-302 10-129 (424)
266 PRK08294 phenol 2-monooxygenas 98.1 2.4E-05 5.3E-10 83.6 11.9 35 20-54 29-64 (634)
267 PRK14989 nitrite reductase sub 98.1 2.2E-05 4.9E-10 86.1 11.9 99 202-302 4-117 (847)
268 TIGR03169 Nterm_to_SelD pyridi 98.1 1.9E-05 4.1E-10 79.0 10.3 97 203-302 1-111 (364)
269 PRK10262 thioredoxin reductase 98.1 8.5E-05 1.8E-09 72.9 14.6 101 200-302 5-121 (321)
270 KOG0029 Amine oxidase [Seconda 98.1 3.9E-06 8.5E-11 86.1 5.1 41 22-71 14-54 (501)
271 PRK13512 coenzyme A disulfide 98.1 3E-05 6.6E-10 79.5 11.6 101 202-302 2-121 (438)
272 PLN02463 lycopene beta cyclase 98.1 4.1E-05 8.9E-10 78.1 12.3 97 203-300 30-171 (447)
273 PRK12770 putative glutamate sy 98.1 2.6E-05 5.7E-10 77.5 10.7 103 198-300 15-133 (352)
274 COG1252 Ndh NADH dehydrogenase 98.1 2.4E-05 5.2E-10 77.4 10.1 100 201-303 3-116 (405)
275 PRK06912 acoL dihydrolipoamide 98.1 3.5E-05 7.7E-10 79.5 11.9 99 24-181 171-272 (458)
276 COG0578 GlpA Glycerol-3-phosph 98.0 2.3E-05 5E-10 79.8 10.1 60 240-299 162-226 (532)
277 COG1249 Lpd Pyruvate/2-oxoglut 98.0 3.7E-05 7.9E-10 78.0 11.5 100 24-181 174-276 (454)
278 TIGR02374 nitri_red_nirB nitri 98.0 2.1E-05 4.6E-10 86.2 10.2 97 204-302 1-112 (785)
279 PRK12779 putative bifunctional 98.0 2.3E-05 4.9E-10 87.0 10.3 93 200-300 305-407 (944)
280 KOG2665 Predicted FAD-dependen 98.0 2.8E-05 6.1E-10 72.3 9.0 68 244-314 198-270 (453)
281 PTZ00367 squalene epoxidase; P 98.0 1.3E-05 2.8E-10 84.1 7.6 33 22-54 32-64 (567)
282 TIGR03143 AhpF_homolog putativ 98.0 9.7E-05 2.1E-09 78.0 14.2 99 202-302 5-118 (555)
283 TIGR03385 CoA_CoA_reduc CoA-di 98.0 4.5E-05 9.8E-10 78.1 11.4 98 24-180 138-236 (427)
284 PF04820 Trp_halogenase: Trypt 98.0 6.2E-05 1.3E-09 77.2 12.2 55 123-179 155-213 (454)
285 COG0562 Glf UDP-galactopyranos 98.0 7.6E-06 1.6E-10 76.4 4.9 43 23-74 1-43 (374)
286 PRK11749 dihydropyrimidine deh 98.0 2.2E-05 4.8E-10 81.0 8.9 90 199-297 138-236 (457)
287 PRK06416 dihydrolipoamide dehy 98.0 4.6E-05 1E-09 78.8 11.1 100 24-181 173-276 (462)
288 KOG2415 Electron transfer flav 98.0 6.9E-06 1.5E-10 79.0 4.4 46 22-76 75-126 (621)
289 PRK04965 NADH:flavorubredoxin 98.0 6.5E-05 1.4E-09 75.5 11.7 98 202-302 3-115 (377)
290 COG3380 Predicted NAD/FAD-depe 98.0 9.1E-06 2E-10 74.1 4.8 39 24-71 2-40 (331)
291 PRK07818 dihydrolipoamide dehy 98.0 6.4E-05 1.4E-09 77.8 11.6 99 24-180 173-276 (466)
292 TIGR01316 gltA glutamate synth 97.9 3E-05 6.5E-10 79.7 8.9 92 201-301 133-234 (449)
293 PF07992 Pyr_redox_2: Pyridine 97.9 1.3E-05 2.8E-10 72.9 5.6 100 203-302 1-126 (201)
294 PRK05249 soluble pyridine nucl 97.9 8.3E-05 1.8E-09 76.9 12.2 97 24-180 176-275 (461)
295 PRK12837 3-ketosteroid-delta-1 97.9 1.1E-05 2.5E-10 84.2 5.8 33 21-54 5-37 (513)
296 COG0492 TrxB Thioredoxin reduc 97.9 0.00058 1.3E-08 65.8 17.0 99 202-302 4-119 (305)
297 TIGR02730 carot_isom carotene 97.9 9.4E-06 2E-10 84.6 5.1 59 242-300 229-288 (493)
298 PRK09853 putative selenate red 97.9 6.3E-05 1.4E-09 82.6 11.5 90 201-300 539-637 (1019)
299 TIGR02733 desat_CrtD C-3',4' d 97.9 9.8E-06 2.1E-10 84.5 5.1 57 241-297 231-293 (492)
300 TIGR01424 gluta_reduc_2 glutat 97.9 9.4E-05 2E-09 76.1 12.2 97 24-180 167-266 (446)
301 PRK07608 ubiquinone biosynthes 97.9 0.00013 2.8E-09 73.6 13.1 98 202-300 6-169 (388)
302 PRK06753 hypothetical protein; 97.9 0.00015 3.2E-09 72.8 13.3 99 203-301 2-155 (373)
303 TIGR01984 UbiH 2-polyprenyl-6- 97.9 0.00014 3E-09 73.3 13.1 97 203-299 1-163 (382)
304 TIGR03219 salicylate_mono sali 97.9 3.8E-05 8.3E-10 78.3 9.1 30 25-54 2-32 (414)
305 PRK06475 salicylate hydroxylas 97.9 0.00017 3.7E-09 73.1 13.7 31 24-54 3-33 (400)
306 PRK08244 hypothetical protein; 97.9 0.00014 2.9E-09 76.0 13.3 99 202-300 3-161 (493)
307 PRK07190 hypothetical protein; 97.9 0.00017 3.6E-09 74.9 13.7 99 202-300 6-167 (487)
308 TIGR02485 CobZ_N-term precorri 97.9 0.0001 2.2E-09 75.5 11.6 27 28-54 1-27 (432)
309 PLN02576 protoporphyrinogen ox 97.9 1.3E-05 2.9E-10 83.7 5.1 41 23-72 12-53 (496)
310 TIGR02053 MerA mercuric reduct 97.9 0.00011 2.4E-09 76.0 11.7 100 24-181 167-270 (463)
311 PRK06116 glutathione reductase 97.9 0.0001 2.2E-09 75.9 11.5 98 24-181 168-269 (450)
312 PRK06370 mercuric reductase; V 97.9 0.00012 2.6E-09 75.7 11.9 99 24-180 172-274 (463)
313 COG2907 Predicted NAD/FAD-bind 97.9 0.00014 3E-09 68.8 10.9 53 246-298 221-273 (447)
314 PLN02507 glutathione reductase 97.9 0.00014 3E-09 75.8 12.3 98 24-181 204-304 (499)
315 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 2.4E-05 5.2E-10 78.3 6.4 31 24-54 1-31 (433)
316 PRK07845 flavoprotein disulfid 97.9 0.00012 2.7E-09 75.6 11.9 98 24-181 178-278 (466)
317 PLN02268 probable polyamine ox 97.8 1.6E-05 3.5E-10 81.6 5.0 48 248-296 203-250 (435)
318 KOG1298 Squalene monooxygenase 97.8 3.2E-05 6.9E-10 73.9 6.4 33 22-54 44-76 (509)
319 COG0446 HcaD Uncharacterized N 97.8 0.00012 2.5E-09 74.5 11.2 96 24-178 137-238 (415)
320 TIGR01318 gltD_gamma_fam gluta 97.8 6E-05 1.3E-09 77.8 9.0 92 200-300 140-240 (467)
321 PRK06327 dihydrolipoamide dehy 97.8 0.00015 3.2E-09 75.3 11.9 100 24-181 184-288 (475)
322 PRK11883 protoporphyrinogen ox 97.8 1.6E-05 3.6E-10 81.9 4.9 39 258-296 235-273 (451)
323 PRK05675 sdhA succinate dehydr 97.8 0.00034 7.3E-09 74.0 14.8 53 125-177 129-189 (570)
324 TIGR01421 gluta_reduc_1 glutat 97.8 0.00014 3.1E-09 74.8 11.5 98 24-180 167-268 (450)
325 PF06039 Mqo: Malate:quinone o 97.8 0.00016 3.5E-09 71.6 11.1 93 242-337 181-290 (488)
326 PLN02852 ferredoxin-NADP+ redu 97.8 7E-05 1.5E-09 76.9 8.9 91 200-299 25-127 (491)
327 PRK06115 dihydrolipoamide dehy 97.8 0.00016 3.5E-09 74.7 11.8 99 24-180 175-279 (466)
328 PLN02568 polyamine oxidase 97.8 2.3E-05 4.9E-10 81.9 5.4 51 243-295 243-293 (539)
329 PRK12831 putative oxidoreducta 97.8 6.6E-05 1.4E-09 77.4 8.6 93 200-300 139-243 (464)
330 KOG2311 NAD/FAD-utilizing prot 97.8 1.9E-05 4.1E-10 77.3 4.2 34 21-54 26-59 (679)
331 PRK07364 2-octaprenyl-6-methox 97.8 0.00024 5.2E-09 72.4 12.6 99 202-300 19-183 (415)
332 COG3349 Uncharacterized conser 97.8 2.3E-05 5E-10 78.6 4.7 39 25-72 2-40 (485)
333 PRK07846 mycothione reductase; 97.8 0.00019 4.1E-09 73.9 11.5 97 24-181 167-266 (451)
334 PRK06292 dihydrolipoamide dehy 97.8 0.00029 6.4E-09 72.8 12.9 99 24-181 170-272 (460)
335 PRK08255 salicylyl-CoA 5-hydro 97.8 3.1E-05 6.7E-10 84.8 5.6 30 25-54 2-33 (765)
336 KOG2495 NADH-dehydrogenase (ub 97.8 0.00016 3.4E-09 70.4 9.6 99 23-179 218-331 (491)
337 PRK08010 pyridine nucleotide-d 97.7 0.00026 5.7E-09 72.7 12.0 96 24-180 159-257 (441)
338 PRK14694 putative mercuric red 97.7 0.00019 4.1E-09 74.3 10.8 96 24-181 179-277 (468)
339 PF00743 FMO-like: Flavin-bind 97.7 0.00036 7.7E-09 72.8 12.6 135 201-338 1-193 (531)
340 PRK12778 putative bifunctional 97.7 0.00011 2.5E-09 80.4 9.1 92 201-300 431-532 (752)
341 PRK06183 mhpA 3-(3-hydroxyphen 97.7 0.00044 9.6E-09 73.0 13.1 99 202-300 11-176 (538)
342 PRK06475 salicylate hydroxylas 97.7 0.00053 1.2E-08 69.5 13.2 100 202-301 3-170 (400)
343 PRK01438 murD UDP-N-acetylmura 97.7 0.00011 2.3E-09 76.5 8.2 90 200-312 15-105 (480)
344 PF06100 Strep_67kDa_ant: Stre 97.7 0.00018 3.8E-09 72.1 9.3 87 211-300 173-276 (500)
345 TIGR02731 phytoene_desat phyto 97.7 4E-05 8.7E-10 79.1 5.0 55 242-296 213-274 (453)
346 TIGR03452 mycothione_red mycot 97.7 0.0004 8.6E-09 71.5 12.3 97 24-181 170-269 (452)
347 PF01134 GIDA: Glucose inhibit 97.7 0.00035 7.7E-09 69.0 11.2 93 203-296 1-150 (392)
348 PRK14727 putative mercuric red 97.7 0.00032 7E-09 72.8 11.5 95 24-180 189-286 (479)
349 PRK06467 dihydrolipoamide dehy 97.7 0.00035 7.5E-09 72.4 11.4 30 24-53 175-204 (471)
350 TIGR01423 trypano_reduc trypan 97.7 0.00039 8.4E-09 72.0 11.7 97 24-180 188-291 (486)
351 TIGR01790 carotene-cycl lycope 97.7 0.00047 1E-08 69.6 12.2 95 203-298 1-141 (388)
352 KOG2404 Fumarate reductase, fl 97.7 0.0007 1.5E-08 63.4 11.9 30 25-54 11-40 (477)
353 TIGR01317 GOGAT_sm_gam glutama 97.6 0.00017 3.7E-09 74.8 8.9 88 201-297 143-239 (485)
354 KOG2853 Possible oxidoreductas 97.6 0.0012 2.7E-08 62.3 13.4 52 22-73 85-140 (509)
355 PLN02661 Putative thiazole syn 97.6 0.0017 3.8E-08 63.2 15.0 159 202-360 93-325 (357)
356 TIGR01438 TGR thioredoxin and 97.6 0.00035 7.5E-09 72.5 11.0 98 24-180 181-282 (484)
357 PTZ00058 glutathione reductase 97.6 0.00044 9.6E-09 72.6 11.7 99 23-180 237-339 (561)
358 PTZ00052 thioredoxin reductase 97.6 0.00036 7.7E-09 72.7 11.0 97 24-181 183-282 (499)
359 PRK12775 putative trifunctiona 97.6 0.00019 4E-09 80.6 9.3 92 201-300 430-532 (1006)
360 TIGR03219 salicylate_mono sali 97.6 0.00063 1.4E-08 69.3 12.5 97 203-299 2-160 (414)
361 PLN02529 lysine-specific histo 97.6 7.1E-05 1.5E-09 80.2 5.5 33 22-54 159-191 (738)
362 PLN02697 lycopene epsilon cycl 97.6 0.00077 1.7E-08 70.1 12.7 96 202-298 109-248 (529)
363 KOG1399 Flavin-containing mono 97.6 0.0017 3.6E-08 65.8 14.8 135 201-337 6-195 (448)
364 PRK13748 putative mercuric red 97.6 0.00045 9.9E-09 73.3 11.4 95 24-180 271-368 (561)
365 TIGR03315 Se_ygfK putative sel 97.6 0.00028 6.2E-09 77.9 10.0 90 201-300 537-635 (1012)
366 PLN02676 polyamine oxidase 97.6 8E-05 1.7E-09 77.2 5.4 40 257-296 245-284 (487)
367 PRK12814 putative NADPH-depend 97.6 0.00022 4.8E-09 76.6 9.0 90 201-299 193-291 (652)
368 PRK05732 2-octaprenyl-6-methox 97.6 0.00087 1.9E-08 67.8 12.9 99 202-300 4-171 (395)
369 PRK09897 hypothetical protein; 97.6 0.0013 2.7E-08 68.6 14.0 99 202-300 2-168 (534)
370 PRK12810 gltD glutamate syntha 97.6 0.00025 5.5E-09 73.4 8.8 89 201-298 143-240 (471)
371 PRK12809 putative oxidoreducta 97.6 0.00023 5E-09 76.4 8.7 91 201-300 310-409 (639)
372 PRK08243 4-hydroxybenzoate 3-m 97.5 0.0014 3E-08 66.3 13.5 100 202-301 3-166 (392)
373 COG0493 GltD NADPH-dependent g 97.5 0.00027 5.8E-09 71.9 8.0 90 201-299 123-221 (457)
374 KOG2614 Kynurenine 3-monooxyge 97.5 0.0013 2.7E-08 64.2 12.1 32 23-54 2-33 (420)
375 KOG1336 Monodehydroascorbate/f 97.5 0.00088 1.9E-08 66.4 11.1 102 23-183 213-319 (478)
376 PF00732 GMC_oxred_N: GMC oxid 97.5 9.4E-05 2E-09 71.7 4.2 65 244-310 195-268 (296)
377 KOG1335 Dihydrolipoamide dehyd 97.5 0.00043 9.4E-09 66.4 8.2 100 24-181 212-318 (506)
378 KOG2852 Possible oxidoreductas 97.5 0.00098 2.1E-08 61.6 10.2 35 20-54 7-47 (380)
379 TIGR02023 BchP-ChlP geranylger 97.5 0.0016 3.5E-08 65.7 13.1 97 203-300 2-157 (388)
380 PLN02546 glutathione reductase 97.5 0.001 2.2E-08 70.0 11.8 97 24-180 253-353 (558)
381 PRK05192 tRNA uridine 5-carbox 97.5 0.0013 2.9E-08 68.6 12.5 94 203-297 6-156 (618)
382 PRK05335 tRNA (uracil-5-)-meth 97.5 0.00012 2.7E-09 72.9 4.6 31 24-54 3-33 (436)
383 COG1635 THI4 Ribulose 1,5-bisp 97.4 0.0016 3.4E-08 58.0 10.6 160 201-360 30-257 (262)
384 PRK12769 putative oxidoreducta 97.4 0.0004 8.7E-09 74.9 8.6 90 201-299 327-425 (654)
385 TIGR02732 zeta_caro_desat caro 97.4 0.00014 3.1E-09 75.1 4.9 57 241-297 218-283 (474)
386 PF05834 Lycopene_cycl: Lycope 97.4 0.0015 3.3E-08 65.4 12.0 96 203-299 1-143 (374)
387 PRK11445 putative oxidoreducta 97.4 0.0028 6E-08 63.0 13.6 96 203-300 3-159 (351)
388 PTZ00188 adrenodoxin reductase 97.4 0.00071 1.5E-08 68.7 9.3 91 200-299 38-139 (506)
389 COG0644 FixC Dehydrogenases (f 97.4 0.0023 5E-08 64.7 13.2 98 203-300 5-154 (396)
390 TIGR01789 lycopene_cycl lycope 97.4 0.00094 2E-08 66.8 10.2 94 203-300 1-140 (370)
391 PF13454 NAD_binding_9: FAD-NA 97.4 0.0022 4.7E-08 55.6 10.9 42 255-296 113-155 (156)
392 COG2072 TrkA Predicted flavopr 97.4 0.0024 5.2E-08 65.3 12.7 133 202-339 9-186 (443)
393 PRK01438 murD UDP-N-acetylmura 97.4 0.0029 6.2E-08 65.8 13.5 31 23-53 16-46 (480)
394 PLN02328 lysine-specific histo 97.4 0.00024 5.2E-09 76.7 5.5 33 22-54 237-269 (808)
395 PTZ00153 lipoamide dehydrogena 97.3 0.0013 2.8E-08 70.2 10.8 30 24-53 313-342 (659)
396 PRK02106 choline dehydrogenase 97.3 0.00023 4.9E-09 75.4 5.1 36 20-55 2-38 (560)
397 KOG2844 Dimethylglycine dehydr 97.3 0.0023 4.9E-08 65.8 11.7 69 227-298 174-243 (856)
398 PRK06126 hypothetical protein; 97.3 0.003 6.4E-08 66.9 13.0 99 201-299 7-189 (545)
399 TIGR02462 pyranose_ox pyranose 97.3 0.00027 5.9E-09 73.3 4.9 31 24-54 1-31 (544)
400 TIGR01816 sdhA_forward succina 97.3 0.005 1.1E-07 65.2 14.4 54 124-177 121-181 (565)
401 PLN02487 zeta-carotene desatur 97.3 0.00038 8.1E-09 73.0 5.8 58 240-297 293-359 (569)
402 COG3573 Predicted oxidoreducta 97.3 0.00034 7.4E-09 65.8 4.8 45 22-73 4-48 (552)
403 TIGR02360 pbenz_hydroxyl 4-hyd 97.3 0.0036 7.8E-08 63.2 12.6 101 201-301 2-166 (390)
404 PLN02612 phytoene desaturase 97.3 0.00033 7.2E-09 74.0 5.2 55 242-296 308-364 (567)
405 TIGR01372 soxA sarcosine oxida 97.2 0.0034 7.3E-08 70.9 13.3 102 201-302 163-290 (985)
406 TIGR00136 gidA glucose-inhibit 97.2 0.0048 1E-07 64.5 13.0 95 203-298 2-154 (617)
407 PRK12771 putative glutamate sy 97.2 0.0012 2.6E-08 70.0 8.8 91 200-300 136-236 (564)
408 PRK13984 putative oxidoreducta 97.2 0.0012 2.6E-08 70.8 8.7 90 200-298 282-380 (604)
409 KOG0685 Flavin-containing amin 97.2 0.00049 1.1E-08 68.1 5.2 41 22-71 20-61 (498)
410 PLN03000 amine oxidase 97.1 0.00053 1.2E-08 74.2 5.2 33 22-54 183-215 (881)
411 PLN02976 amine oxidase 97.1 0.00061 1.3E-08 76.6 5.3 42 22-72 692-733 (1713)
412 COG2303 BetA Choline dehydroge 97.0 0.00064 1.4E-08 71.3 4.6 36 19-54 3-38 (542)
413 PF12831 FAD_oxidored: FAD dep 97.0 0.00082 1.8E-08 68.7 5.1 94 203-296 1-148 (428)
414 TIGR02028 ChlP geranylgeranyl 97.0 0.012 2.6E-07 59.6 13.3 97 203-300 2-162 (398)
415 PRK06567 putative bifunctional 97.0 0.0019 4.2E-08 70.5 7.7 34 200-233 382-415 (1028)
416 PF04820 Trp_halogenase: Trypt 97.0 0.004 8.8E-08 63.9 9.8 53 248-301 160-214 (454)
417 COG3380 Predicted NAD/FAD-depe 96.9 0.0056 1.2E-07 56.4 8.9 93 203-296 3-158 (331)
418 KOG4254 Phytoene desaturase [C 96.9 0.00099 2.1E-08 65.3 4.4 57 242-298 264-321 (561)
419 PRK06481 fumarate reductase fl 96.9 0.019 4.1E-07 60.1 13.9 101 202-302 62-256 (506)
420 PRK12266 glpD glycerol-3-phosp 96.8 0.016 3.5E-07 60.6 12.8 48 251-298 164-216 (508)
421 TIGR00137 gid_trmFO tRNA:m(5)U 96.8 0.0042 9.1E-08 62.5 7.9 34 203-236 2-35 (433)
422 PLN00093 geranylgeranyl diphos 96.8 0.024 5.2E-07 58.2 13.4 100 200-300 38-201 (450)
423 TIGR01813 flavo_cyto_c flavocy 96.7 0.025 5.4E-07 58.1 13.4 57 246-302 134-197 (439)
424 COG1148 HdrA Heterodisulfide r 96.7 0.0054 1.2E-07 60.9 7.5 81 201-281 124-217 (622)
425 COG1251 NirB NAD(P)H-nitrite r 96.7 0.012 2.7E-07 61.6 10.3 100 202-303 4-118 (793)
426 KOG1276 Protoporphyrinogen oxi 96.7 0.002 4.3E-08 62.9 4.4 31 24-54 12-44 (491)
427 KOG0404 Thioredoxin reductase 96.6 0.021 4.5E-07 51.1 9.8 99 202-302 9-128 (322)
428 PRK08294 phenol 2-monooxygenas 96.6 0.029 6.4E-07 60.2 13.0 97 202-298 33-210 (634)
429 PRK08274 tricarballylate dehyd 96.5 0.034 7.3E-07 57.6 13.1 99 203-301 6-196 (466)
430 PRK08401 L-aspartate oxidase; 96.5 0.045 9.8E-07 56.6 13.7 32 202-233 2-33 (466)
431 PF01946 Thi4: Thi4 family; PD 96.5 0.029 6.3E-07 50.4 10.4 101 202-302 18-169 (230)
432 KOG2960 Protein involved in th 96.5 0.00096 2.1E-08 58.7 1.1 32 23-54 76-109 (328)
433 TIGR01810 betA choline dehydro 96.4 0.0028 6.2E-08 66.7 4.1 31 25-55 1-32 (532)
434 PLN02785 Protein HOTHEAD 96.4 0.0042 9.1E-08 65.8 5.2 33 21-54 53-85 (587)
435 PLN02985 squalene monooxygenas 96.4 0.043 9.3E-07 57.4 12.4 33 202-234 44-76 (514)
436 KOG2820 FAD-dependent oxidored 96.3 0.027 5.9E-07 53.6 9.6 54 248-301 159-215 (399)
437 COG0445 GidA Flavin-dependent 96.3 0.01 2.2E-07 60.1 7.1 93 203-296 6-156 (621)
438 PF00890 FAD_binding_2: FAD bi 96.3 0.046 1E-06 55.7 12.0 56 244-299 143-204 (417)
439 TIGR03862 flavo_PP4765 unchara 96.2 0.045 9.8E-07 54.4 11.0 84 214-300 57-143 (376)
440 KOG1238 Glucose dehydrogenase/ 96.2 0.0052 1.1E-07 63.5 4.2 35 20-54 54-89 (623)
441 KOG0042 Glycerol-3-phosphate d 96.1 0.0029 6.4E-08 63.5 2.1 36 22-57 66-101 (680)
442 PF13450 NAD_binding_8: NAD(P) 96.1 0.012 2.5E-07 43.0 4.7 31 206-236 1-31 (68)
443 PRK07121 hypothetical protein; 96.1 0.085 1.8E-06 55.1 12.8 53 246-298 181-239 (492)
444 PRK07804 L-aspartate oxidase; 95.9 0.094 2E-06 55.4 12.6 53 244-296 146-208 (541)
445 KOG2614 Kynurenine 3-monooxyge 95.8 0.039 8.5E-07 54.1 8.4 34 202-235 3-36 (420)
446 TIGR01812 sdhA_frdA_Gneg succi 95.8 0.13 2.8E-06 54.7 13.2 32 203-234 1-32 (566)
447 PRK06175 L-aspartate oxidase; 95.8 0.14 3.1E-06 52.4 12.9 56 243-298 129-189 (433)
448 PRK05945 sdhA succinate dehydr 95.7 0.15 3.3E-06 54.3 13.0 53 246-298 139-197 (575)
449 PRK06854 adenylylsulfate reduc 95.6 0.19 4E-06 53.9 13.4 49 248-296 138-193 (608)
450 PRK14106 murD UDP-N-acetylmura 95.6 0.1 2.3E-06 53.7 11.3 31 23-53 5-35 (450)
451 PTZ00367 squalene epoxidase; P 95.6 0.1 2.3E-06 55.0 11.3 33 202-234 34-66 (567)
452 COG3634 AhpF Alkyl hydroperoxi 95.6 0.042 9E-07 52.5 7.3 97 201-297 211-324 (520)
453 TIGR00551 nadB L-aspartate oxi 95.5 0.17 3.7E-06 52.7 12.6 56 244-299 130-190 (488)
454 PRK14106 murD UDP-N-acetylmura 95.5 0.051 1.1E-06 56.0 8.6 80 201-302 5-84 (450)
455 PF00996 GDI: GDP dissociation 95.5 0.02 4.3E-07 57.9 5.3 56 242-298 232-289 (438)
456 KOG2311 NAD/FAD-utilizing prot 95.4 0.067 1.5E-06 53.3 8.3 31 203-233 30-60 (679)
457 KOG3855 Monooxygenase involved 95.4 0.02 4.4E-07 55.9 4.6 33 22-54 35-71 (481)
458 COG4529 Uncharacterized protei 95.4 0.2 4.4E-06 50.4 11.6 100 202-302 2-168 (474)
459 PRK08275 putative oxidoreducta 95.4 0.24 5.2E-06 52.5 13.1 56 243-298 138-200 (554)
460 PRK08255 salicylyl-CoA 5-hydro 95.3 0.048 1E-06 60.0 7.9 33 203-235 2-36 (765)
461 TIGR03862 flavo_PP4765 unchara 95.2 0.3 6.6E-06 48.6 12.4 53 124-177 88-141 (376)
462 PRK06263 sdhA succinate dehydr 95.2 0.24 5.1E-06 52.4 12.3 57 242-298 134-197 (543)
463 PRK07573 sdhA succinate dehydr 95.1 0.34 7.3E-06 52.2 13.3 47 251-297 179-231 (640)
464 PRK06452 sdhA succinate dehydr 95.1 0.31 6.7E-06 51.7 12.8 52 245-296 139-196 (566)
465 KOG1346 Programmed cell death 95.0 0.15 3.3E-06 49.9 9.2 49 130-180 401-452 (659)
466 PRK07803 sdhA succinate dehydr 94.9 0.37 8.1E-06 51.8 13.0 40 257-296 166-211 (626)
467 COG1004 Ugd Predicted UDP-gluc 94.8 0.19 4.2E-06 49.3 9.4 29 25-53 2-30 (414)
468 TIGR02485 CobZ_N-term precorri 94.8 0.3 6.6E-06 50.0 11.7 59 244-302 125-188 (432)
469 PF01494 FAD_binding_3: FAD bi 94.8 0.032 6.9E-07 55.1 4.3 35 203-237 3-37 (356)
470 PRK05335 tRNA (uracil-5-)-meth 94.8 0.049 1.1E-06 54.7 5.4 35 202-236 3-37 (436)
471 PRK06069 sdhA succinate dehydr 94.7 0.43 9.4E-06 50.8 12.9 52 246-297 141-199 (577)
472 PRK09078 sdhA succinate dehydr 94.5 0.45 9.8E-06 50.9 12.4 55 244-298 151-212 (598)
473 PRK06184 hypothetical protein; 94.5 0.066 1.4E-06 56.1 6.0 36 202-237 4-39 (502)
474 PRK08626 fumarate reductase fl 94.5 0.66 1.4E-05 50.1 13.6 46 250-295 166-217 (657)
475 PTZ00139 Succinate dehydrogena 94.5 0.43 9.4E-06 51.2 12.1 54 243-296 167-227 (617)
476 TIGR01811 sdhA_Bsu succinate d 94.4 0.49 1.1E-05 50.6 12.5 31 204-234 1-31 (603)
477 PRK05868 hypothetical protein; 94.4 0.067 1.5E-06 53.6 5.6 35 202-236 2-36 (372)
478 PRK06847 hypothetical protein; 94.4 0.091 2E-06 52.7 6.5 36 201-236 4-39 (375)
479 PRK08163 salicylate hydroxylas 94.3 0.076 1.6E-06 53.7 5.9 36 201-236 4-39 (396)
480 PRK09231 fumarate reductase fl 94.3 0.65 1.4E-05 49.5 13.0 53 244-296 135-194 (582)
481 TIGR03197 MnmC_Cterm tRNA U-34 94.3 0.12 2.6E-06 52.0 7.1 58 241-299 134-191 (381)
482 TIGR01176 fum_red_Fp fumarate 94.2 0.73 1.6E-05 49.1 13.1 51 246-296 136-193 (580)
483 PRK08205 sdhA succinate dehydr 94.2 0.72 1.6E-05 49.2 13.0 57 242-298 140-206 (583)
484 COG1206 Gid NAD(FAD)-utilizing 94.1 0.053 1.1E-06 51.5 3.8 30 24-53 4-33 (439)
485 KOG1298 Squalene monooxygenase 94.1 0.17 3.6E-06 49.3 7.0 33 202-234 46-78 (509)
486 PLN00128 Succinate dehydrogena 94.0 0.84 1.8E-05 49.1 13.3 54 244-297 189-249 (635)
487 PF01210 NAD_Gly3P_dh_N: NAD-d 94.0 0.064 1.4E-06 46.5 4.0 29 25-53 1-29 (157)
488 COG0654 UbiH 2-polyprenyl-6-me 94.0 0.078 1.7E-06 53.5 5.2 56 202-257 3-60 (387)
489 PRK08958 sdhA succinate dehydr 94.0 0.74 1.6E-05 49.1 12.7 54 244-297 145-205 (588)
490 TIGR01470 cysG_Nterm siroheme 93.9 0.15 3.3E-06 46.2 6.3 70 201-295 9-78 (205)
491 COG0029 NadB Aspartate oxidase 93.9 0.34 7.3E-06 49.0 9.0 49 248-296 139-194 (518)
492 KOG0405 Pyridine nucleotide-di 93.8 0.94 2E-05 43.6 11.5 70 247-321 115-186 (478)
493 PF02558 ApbA: Ketopantoate re 93.7 0.2 4.3E-06 42.9 6.5 73 204-294 1-75 (151)
494 PRK07494 2-octaprenyl-6-methox 93.7 0.16 3.5E-06 51.1 6.8 35 202-236 8-42 (388)
495 PF13434 K_oxygenase: L-lysine 93.7 0.22 4.8E-06 49.1 7.5 100 203-302 4-163 (341)
496 KOG2755 Oxidoreductase [Genera 93.6 0.072 1.6E-06 48.9 3.6 95 204-301 2-107 (334)
497 PRK09126 hypothetical protein; 93.4 0.21 4.5E-06 50.4 7.1 56 202-257 4-65 (392)
498 KOG0029 Amine oxidase [Seconda 93.4 0.11 2.5E-06 53.7 5.2 37 200-236 14-50 (501)
499 PRK12835 3-ketosteroid-delta-1 93.4 1.4 3E-05 47.1 13.4 54 249-302 220-280 (584)
500 PF13241 NAD_binding_7: Putati 93.4 0.072 1.6E-06 42.4 2.9 32 23-54 7-38 (103)
No 1
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.3e-87 Score=669.39 Aligned_cols=447 Identities=40% Similarity=0.610 Sum_probs=414.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCC-CccccccccCchhhHHHHHHhHhhHHHhhhh-c
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIG-GVGGTCVIRGCVPKKILVYGASFGGELEDAR-S 97 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~-~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~-~ 97 (498)
|+.+||+|||||||||..||.+|++.|.+|++|| +. .+||+|+|+||+|+|.|++.++....+.+.. .
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE----------~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~ 70 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVE----------KGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKE 70 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEe----------ecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccc
Confidence 3457999999999999999999999999999999 45 7999999999999999999999998888776 6
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 98 YGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
||+..... .+||.+++.+++...+.+......+++.++|+++.|++.+++++++.|... ..++++++++|||||++|
T Consensus 71 ~Gi~~~~~-~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~--~~~~~~a~~iiIATGS~p 147 (454)
T COG1249 71 YGISAEVP-KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE--DKETITADNIIIATGSRP 147 (454)
T ss_pred cceecCCC-CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC--CceEEEeCEEEEcCCCCC
Confidence 88877643 899999999999988888888888999999999999999999999999665 245899999999999999
Q ss_pred CCCCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhC
Q 042564 178 QRAPIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255 (498)
Q Consensus 178 ~~p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~ 255 (498)
..|++++.+. ++++++.+.+.++|++++|||||++|+|+|+.|+++|++||++++.+++++.+|+++++.+.+.|++.
T Consensus 148 ~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~ 227 (454)
T COG1249 148 RIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKG 227 (454)
T ss_pred cCCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhC
Confidence 9999888754 67888877777999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEcCccEEEEEEeCCeEEEEECCCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 256 GINLHPRTTIKELIKSEEGVKVITDHGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
|+.+++++.+++++..++++.+.+++|+ .+.+|.+++|+|++||++.|+|++.|++++++|+|.||+.++||+|||||
T Consensus 228 gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA 307 (454)
T COG1249 228 GVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYA 307 (454)
T ss_pred CeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEE
Confidence 9999999999999887776788887776 68899999999999999999999999999999999999888889999999
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccc
Q 042564 334 VGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTI 413 (498)
Q Consensus 334 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
+|||++.++++|.|.+||++|++|+++......+|..+|+++|++|++++||+||+||+++++ ++++...+|....++.
T Consensus 308 ~GDV~~~~~Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~-~~~~~~~~f~~~~ra~ 386 (454)
T COG1249 308 IGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGI-DYKVGKFPFAANGRAI 386 (454)
T ss_pred eeccCCCcccHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCC-ceEEEEeecccchhHH
Confidence 999999988999999999999999998555667899999999999999999999999999854 7899999999999998
Q ss_pred ccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 414 SGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 414 ~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
....+.||+|+++|+++++|||+|++|++|.|+|+.++++|++++|++++.+++|+|||++|.+.++
T Consensus 387 ~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a 453 (454)
T COG1249 387 TMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEA 453 (454)
T ss_pred hccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHh
Confidence 8888999999999999999999999999999999999999999999999999999999999998865
No 2
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.6e-88 Score=613.63 Aligned_cols=473 Identities=58% Similarity=0.934 Sum_probs=443.1
Q ss_pred CCccccCCCCCCCCCccccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhH
Q 042564 1 MARKMLNDGELSQPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKK 80 (498)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~ 80 (498)
|.|++....+... +....++||.+|||||.+|+++|++++..|.+|.|+|. +.++||+|+++||+|+|
T Consensus 1 ~~r~~~~~~~~~~---~a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~---------~f~lGGTCVn~GCVPKK 68 (478)
T KOG0405|consen 1 MARQMLVDGEIDK---MAADVKDFDYLVIGGGSGGVASARRAASHGAKVALCEL---------PFGLGGTCVNVGCVPKK 68 (478)
T ss_pred CCccccccCCCCc---ccccccccceEEEcCCcchhHHhHHHHhcCceEEEEec---------CCCcCceEEeeccccce
Confidence 4455544444443 56666789999999999999999999999999999993 44999999999999999
Q ss_pred HHHHHhHhhHHHhhhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCc
Q 042564 81 ILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGT 160 (498)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~ 160 (498)
+||+++.+.+.+++...|||+......+||..+.+.++.++.++...|++.+.+.+|+++.|++.+++++.+.|+..+|.
T Consensus 69 vm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~ 148 (478)
T KOG0405|consen 69 VMWYAADYSEEMEDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGT 148 (478)
T ss_pred eEEehhhhhHHhhhhhhcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCe
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999988887
Q ss_pred eEEEEcCeEEEcCCCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCC
Q 042564 161 KLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF 240 (498)
Q Consensus 161 ~~~~~~d~liiAtG~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~ 240 (498)
...|++.+++||||++|.+|+|||.++.++++.+++|+++|++++|+|+|++++|+|..|+.+|++++++.|.+.+|+.|
T Consensus 149 ~~~Ytak~iLIAtGg~p~~PnIpG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~F 228 (478)
T KOG0405|consen 149 KIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGF 228 (478)
T ss_pred eEEEecceEEEEeCCccCCCCCCchhhccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcch
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeE
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~ 319 (498)
|+.++..+.+.++.+||++|.++.+.++.+..++ ..+..+.|+...+|.++||+|+.||+..|+|++.|++++++|.|.
T Consensus 229 D~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~Ii 308 (478)
T KOG0405|consen 229 DEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAII 308 (478)
T ss_pred hHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEE
Confidence 9999999999999999999999999999887776 556666776666999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhC-CCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCC--
Q 042564 320 VDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG-GQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGK-- 396 (498)
Q Consensus 320 vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~-- 396 (498)
||+|.+||+|+||++||+++...++++|++.|+.+++.+++ .++.+++|.++|.++|+.|+++.|||||+||.++ |
T Consensus 309 vDeYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiek-yg~ 387 (478)
T KOG0405|consen 309 VDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEK-YGK 387 (478)
T ss_pred EeccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHH-hCc
Confidence 99999999999999999999999999999999999999998 5677899999999999999999999999999987 5
Q ss_pred CCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHH
Q 042564 397 GDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEE 476 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~ 476 (498)
+++.+|...|.++.+++...+++-++||++..++.+++|+|++|+++.|+++.|+.|+++|+|-.|+...+.+|||.+|+
T Consensus 388 ~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEE 467 (478)
T KOG0405|consen 388 GDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEE 467 (478)
T ss_pred cceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHHH
Confidence 58999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 042564 477 FVTMRSVTRR 486 (498)
Q Consensus 477 ~~~~~~~~~~ 486 (498)
|..|+...|+
T Consensus 468 lVTmr~~tr~ 477 (478)
T KOG0405|consen 468 LVTMRSVTRR 477 (478)
T ss_pred heeccccccC
Confidence 9998876653
No 3
>PLN02507 glutathione reductase
Probab=100.00 E-value=8.2e-84 Score=663.14 Aligned_cols=497 Identities=87% Similarity=1.358 Sum_probs=436.7
Q ss_pred CCccccCCCCCCCCCcc-ccC-CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchh
Q 042564 1 MARKMLNDGELSQPNQE-EQT-HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVP 78 (498)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~-~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p 78 (498)
|+|.+.-.+++.+.... ..+ ..+||++||||||||++||.+|++.|++|+|||+++...+....+.+||+|+|+||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciP 80 (499)
T PLN02507 1 MARKMLIDGEVAKVNADEANATHYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVP 80 (499)
T ss_pred CCcccccchhhhhHhhhhhcccccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchh
Confidence 55655555544442211 112 3469999999999999999999999999999995333323333467999999999999
Q ss_pred hHHHHHHhHhhHHHhhhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCC
Q 042564 79 KKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLD 158 (498)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~ 158 (498)
+|.+++.+.+.+.+.....+|+.......++|.+++.+....+.++...++..+.+.+|+++.+++.+++++.+.|...+
T Consensus 81 sK~l~~~a~~~~~~~~~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~ 160 (499)
T PLN02507 81 KKILVYGATFGGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLD 160 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCC
Confidence 99999999998888888889887655568999999999999999988888888999999999999999999999998877
Q ss_pred CceEEEEcCeEEEcCCCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC
Q 042564 159 GTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR 238 (498)
Q Consensus 159 g~~~~~~~d~liiAtG~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~ 238 (498)
|+...+.||+||||||++|..|++||.+..+++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++
T Consensus 161 g~~~~~~~d~LIIATGs~p~~p~ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~ 240 (499)
T PLN02507 161 GTKLRYTAKHILIATGSRAQRPNIPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR 240 (499)
T ss_pred CcEEEEEcCEEEEecCCCCCCCCCCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc
Confidence 76557899999999999999999999876678888888878899999999999999999999999999999999998888
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCe
Q 042564 239 GFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAV 318 (498)
Q Consensus 239 ~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i 318 (498)
.+++++.+.+.+.|++.||++++++.|.++..+++++.+.+.+|+++++|.|++++|++||++.+.+++.|++++++|+|
T Consensus 241 ~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I 320 (499)
T PLN02507 241 GFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAV 320 (499)
T ss_pred ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcE
Confidence 89999999999999999999999999999987666777888888889999999999999999987788899999999999
Q ss_pred EcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCC
Q 042564 319 KVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGD 398 (498)
Q Consensus 319 ~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~ 398 (498)
.||+++||++|||||+|||++.+.+++.|.+||+++|+||+++....+++..+|+.+|+.|++++||+||+||+.++..+
T Consensus 321 ~Vd~~~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~ 400 (499)
T PLN02507 321 KVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGD 400 (499)
T ss_pred ecCCCCcCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCC
Confidence 99999999999999999999988999999999999999999876666778889999999999999999999999873336
Q ss_pred EEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHH
Q 042564 399 ILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFV 478 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~ 478 (498)
+.+....+.+..+++....+++|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~ 480 (499)
T PLN02507 401 ILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFV 480 (499)
T ss_pred EEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHH
Confidence 77777777766666555567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCC
Q 042564 479 TMRSVTRRVAAASSNPKTNL 498 (498)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~ 498 (498)
+++...+ ..++...|||||
T Consensus 481 ~~~~~~~-~~~~~~~~~~~~ 499 (499)
T PLN02507 481 TMRSVTR-RVTAKGKPKTNL 499 (499)
T ss_pred HHHhhhc-cccccCCCCCCC
Confidence 8776666 556678899997
No 4
>PLN02546 glutathione reductase
Probab=100.00 E-value=7.2e-81 Score=643.15 Aligned_cols=460 Identities=57% Similarity=0.980 Sum_probs=413.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||+.||+.|++.|++|+|||+++...+.+..+.+||+|+|+||+|+|.+++.+...+.+++...||+.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~ 157 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK 157 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 46999999999999999999999999999999543222333457899999999999999999999999988888889987
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
......+||..++.+++..+.++..++...+++.+|+++.|.+.+++++.+.+ +|+ .+.||+||||||++|..|+
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v---~G~--~~~~D~LVIATGs~p~~P~ 232 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV---DGK--LYTARNILIAVGGRPFIPD 232 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE---CCE--EEECCEEEEeCCCCCCCCC
Confidence 64446799999999999999999999999999999999999999999988776 554 7999999999999999999
Q ss_pred CCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEc
Q 042564 182 IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 182 i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
+||.+.++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.|+++||++++
T Consensus 233 IpG~~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~ 312 (558)
T PLN02546 233 IPGIEHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHT 312 (558)
T ss_pred CCChhhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEe
Confidence 99988888888888887789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC
Q 042564 262 RTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR 340 (498)
Q Consensus 262 ~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 340 (498)
++.+.++..++++ +.+.+.+++...+|.|++++|++||.+.+.+++.|++++++|+|.||+++||++|||||+|||++.
T Consensus 313 ~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~ 392 (558)
T PLN02546 313 EESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDR 392 (558)
T ss_pred CCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCC
Confidence 9999999764333 555566665556999999999999999877788999999889999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCcee
Q 042564 341 MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT 420 (498)
Q Consensus 341 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
+++++.|.+||+++|+||++......++..+|+++|++|++++||+||+||+++++ ++.++...+.+..+.+....+++
T Consensus 393 ~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~-~~~~~~~~~~~~~~~~~~~~~~g 471 (558)
T PLN02546 393 INLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYG-DVDVFTANFRPLKATLSGLPDRV 471 (558)
T ss_pred cccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCC-CeEEEEEecccchhhhhCCCCcE
Confidence 99999999999999999998665556788999999999999999999999999854 67888888877665555556789
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHHHHHH
Q 042564 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRV 487 (498)
Q Consensus 421 ~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~ 487 (498)
|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.+++...+.+
T Consensus 472 ~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~~~~~~~ 538 (558)
T PLN02546 472 FMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKI 538 (558)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999988777766
No 5
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=5.1e-80 Score=630.84 Aligned_cols=467 Identities=40% Similarity=0.702 Sum_probs=404.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhC-CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF-GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
++|||+||||||||+.||.++++. |++|+|||+.... ..+....+||+|+|+||+|+|.|+..++..+.+++...||+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~-~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHH-GPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCc-cccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCe
Confidence 469999999999999999999996 9999999931000 00112479999999999999999999999888888888887
Q ss_pred ccc-cccccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEEEeCCEEEEEeCC---C-ceEEEEcCeEEEcCC
Q 042564 101 EVH-EKIDFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKIVGPNEVEVTQLD---G-TKLSYSAKHILIATG 174 (498)
Q Consensus 101 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~i~~~~~~v~~~~---g-~~~~~~~d~liiAtG 174 (498)
... ....+||..+.++++..+.++...+...++. .+|+++.|++.+++++++.|.... + ....++||+||||||
T Consensus 81 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATG 160 (486)
T TIGR01423 81 EFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATG 160 (486)
T ss_pred eccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecC
Confidence 643 2457899999999999999998888888877 499999999999999999986421 1 134799999999999
Q ss_pred CCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHC---CCcEEEEeeCCCCCCCCCHHHHHHHHHH
Q 042564 175 SRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGM---GSTVDLLFRKELPLRGFDDEMRAVVARN 251 (498)
Q Consensus 175 ~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~V~lv~~~~~~l~~~~~~~~~~l~~~ 251 (498)
++|..|++||.+.++++++++.+...|++++|||+|++|+|+|..|..+ |.+|+++++.+++++.+|+++.+.+.+.
T Consensus 161 s~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~ 240 (486)
T TIGR01423 161 SWPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQ 240 (486)
T ss_pred CCCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHH
Confidence 9999999999887888888888888899999999999999999888765 9999999999999999999999999999
Q ss_pred HHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCC
Q 042564 252 LEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPS 330 (498)
Q Consensus 252 l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~ 330 (498)
|+++||++++++.+.++..++++ ..+.+.+|+++++|.|++|+|++||++.+.+++.+++++++|+|.||+++||++||
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~ 320 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPN 320 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCCCC
Confidence 99999999999999999865444 56777778889999999999999999988788899999999999999999999999
Q ss_pred eEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCc
Q 042564 331 IWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMR 410 (498)
Q Consensus 331 iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~ 410 (498)
|||+|||++.+++++.|.+||+++++||++......++..+|+++|+.|++++||+||+||++. +..+.++...+.+..
T Consensus 321 IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~-~~~~~~~~~~~~~~~ 399 (486)
T TIGR01423 321 IYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKK-FEKVAVYESSFTPLM 399 (486)
T ss_pred EEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhc-CCceEEEEEeeCchh
Confidence 9999999999999999999999999999986545567778999999999999999999999987 446666666666554
Q ss_pred cccccCC-ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHHHHHHhc
Q 042564 411 NTISGRQ-EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAA 489 (498)
Q Consensus 411 ~~~~~~~-~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~~~ 489 (498)
..+.... +.+|+||++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|.+.++....+.+..
T Consensus 400 ~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~~~~~~~ 479 (486)
T TIGR01423 400 HNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYQK 479 (486)
T ss_pred hhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhccccccccc
Confidence 4433222 368999999999999999999999999999999999999999999999999999999999887544444443
Q ss_pred c
Q 042564 490 A 490 (498)
Q Consensus 490 ~ 490 (498)
|
T Consensus 480 ~ 480 (486)
T TIGR01423 480 G 480 (486)
T ss_pred C
Confidence 3
No 6
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=9.6e-80 Score=627.56 Aligned_cols=444 Identities=43% Similarity=0.729 Sum_probs=401.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
++|||+||||||||++||+.|++.|++|+||| +..+||+|+|+||+|+|.++..+......++...||+.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~ 70 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVE----------AKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFY 70 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEec----------ccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcc
Confidence 36999999999999999999999999999999 66799999999999999999999988888888888876
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC-
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA- 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p- 180 (498)
......++|..+..+++..++++...+...+.+.+|+++.+++.+.+++.+.+ +++ .++||+||||||++|+.|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v---~~~--~~~~d~vIiAtGs~p~~p~ 145 (450)
T TIGR01421 71 QNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV---NGR--DYTAPHILIATGGKPSFPE 145 (450)
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CCE--EEEeCEEEEecCCCCCCCC
Confidence 54334689999999999999998888888899999999999998888887766 443 799999999999999999
Q ss_pred CCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 181 PIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 181 ~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
++||.+..+++++++.+...|++++|||+|++|+|+|..|+++|.+|+++++.+++++.+|+++.+.+.+.|+++||+++
T Consensus 146 ~i~g~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 146 NIPGAELGTDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVH 225 (450)
T ss_pred CCCCCceeEcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEE
Confidence 89998777788888888888999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCccEEEEEEeCCe-EEEEECCC-eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccC
Q 042564 261 PRTTIKELIKSEEG-VKVITDHG-EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338 (498)
Q Consensus 261 ~~~~v~~i~~~~~~-~~v~~~~g-~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~ 338 (498)
+++.+.++..++++ +.+.+++| +.+++|.|++++|++||++.+.++..+++++++|+|.||+++||++|||||+|||+
T Consensus 226 ~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~ 305 (450)
T TIGR01421 226 KLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVV 305 (450)
T ss_pred cCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecC
Confidence 99999999875444 66777777 57999999999999999998778889999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCC-CCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCccccccC
Q 042564 339 NRMNLTPVALMEGTCFAKTVFGGQ-PCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGR 416 (498)
Q Consensus 339 ~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
+.+.+++.|.+||+++|+||+++. ....++..+|+++|++|++++||+||+||+++ ++..+.+...++.+..++....
T Consensus 306 ~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 385 (450)
T TIGR01421 306 GKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSE 385 (450)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcC
Confidence 999999999999999999999754 34457889999999999999999999999876 4445777777777766665556
Q ss_pred CceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 417 QEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 417 ~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
.+.+|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++
T Consensus 386 ~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T TIGR01421 386 KQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM 449 (450)
T ss_pred CCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence 7789999999999999999999999999999999999999999999999999999999998765
No 7
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=3.6e-79 Score=624.27 Aligned_cols=444 Identities=68% Similarity=1.102 Sum_probs=404.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+||||||||++||+.|++.|++|+|+| +..+||+|+++||+|+|.++..+.....+++...||+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 71 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAE----------EPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTV 71 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEe----------cCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCC
Confidence 5999999999999999999999999999999 567999999999999999999999998888888888865
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
. ...++|..+..+++..+.++...++..+.+.+++++.+++.+++++.+.+.. +|+ .++||+||||||++|..|++
T Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~-~g~--~~~~d~lIiATGs~p~~p~i 147 (446)
T TIGR01424 72 G-KARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQ-DGT--TYTAKKILIAVGGRPQKPNL 147 (446)
T ss_pred C-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEec-CCe--EEEcCEEEEecCCcCCCCCC
Confidence 3 4578999999999999999988899999999999999999999998887753 443 79999999999999999999
Q ss_pred CCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcC
Q 042564 183 PGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPR 262 (498)
Q Consensus 183 ~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 262 (498)
||.+..+++++.+.+...+++++|||+|++|+|+|..++++|.+|+++++.+.+++.+++++.+.+.+.+++.||+++++
T Consensus 148 ~G~~~~~~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~ 227 (446)
T TIGR01424 148 PGHELGITSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQ 227 (446)
T ss_pred CCccceechHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeC
Confidence 99877778888888877899999999999999999999999999999999999888899999999999999999999999
Q ss_pred ccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCC
Q 042564 263 TTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMN 342 (498)
Q Consensus 263 ~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~ 342 (498)
+.|.++..++++..+++.+|+++++|.|++|+|++||++.+.+++.+++++++|+|.||+++||++|||||+|||++.++
T Consensus 228 ~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~ 307 (446)
T TIGR01424 228 TSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRIN 307 (446)
T ss_pred CEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCcc
Confidence 99999987666677777788889999999999999999987788899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEE
Q 042564 343 LTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVM 422 (498)
Q Consensus 343 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (498)
+++.|.+||+++|+||+++...+.++..+|+++|+.|++++||+||+||++++..++.+....+.+..+++....+++|+
T Consensus 308 l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 387 (446)
T TIGR01424 308 LTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLM 387 (446)
T ss_pred chhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEE
Confidence 99999999999999999865555677889999999999999999999999873136777777776666665556678999
Q ss_pred EEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 423 KLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 423 kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++
T Consensus 388 kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 445 (446)
T TIGR01424 388 KLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM 445 (446)
T ss_pred EEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999988764
No 8
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1.2e-78 Score=622.54 Aligned_cols=445 Identities=47% Similarity=0.801 Sum_probs=403.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhh-hhcC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELED-ARSY 98 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~-~~~~ 98 (498)
|+.+|||+||||||||++||+.|++.|++|+||| +..+||+|+|+||+|+|.+++.+.....++. ...+
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE----------~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~ 70 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIE----------AKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGY 70 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEe----------ccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhc
Confidence 3456999999999999999999999999999999 5689999999999999999999988887776 5667
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
|+... .+.++|..+..+....++++...+...+.+.+|+++.+++.+++++.+.+ +|+ .++||+||||||++|+
T Consensus 71 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~---~g~--~~~~d~lViATGs~p~ 144 (450)
T PRK06116 71 GFDVT-ENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV---NGE--RYTADHILIATGGRPS 144 (450)
T ss_pred CCCCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CCE--EEEeCEEEEecCCCCC
Confidence 77543 45789999999998888888888888888899999999999999887776 443 7999999999999999
Q ss_pred CCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 179 RAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 179 ~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
.|++||.+.++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+++.||+
T Consensus 145 ~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~ 224 (450)
T PRK06116 145 IPDIPGAEYGITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIR 224 (450)
T ss_pred CCCCCCcceeEchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcE
Confidence 99999988888888888888889999999999999999999999999999999999888889999999999999999999
Q ss_pred EEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEeccc
Q 042564 259 LHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
+++++.|.++..++++ +.+.+.+|+++++|.|++|+|++|+.+.+.++..+++++++|+|.||+++||++|||||+|||
T Consensus 225 i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~ 304 (450)
T PRK06116 225 LHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDV 304 (450)
T ss_pred EECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeec
Confidence 9999999999876555 677888888899999999999999999877788999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCC-CCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCC-CEEEEEEecCCCcccccc
Q 042564 338 TNRMNLTPVALMEGTCFAKTVFGGQP-CKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKG-DILVFTSSFNPMRNTISG 415 (498)
Q Consensus 338 ~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~-~~~~~~~~~~~~~~~~~~ 415 (498)
++.+++++.|.+||+++|+||++... ...++..+|+.+|+.|++++||+||+||+++++. .+.+....+....+++..
T Consensus 305 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (450)
T PRK06116 305 TGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTG 384 (450)
T ss_pred CCCcCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhc
Confidence 98889999999999999999998654 4567889999999999999999999999998553 377777777777776656
Q ss_pred CCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 416 RQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 416 ~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
..+++|+||++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++
T Consensus 385 ~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T PRK06116 385 HRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTM 449 (450)
T ss_pred CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhhc
Confidence 67889999999999999999999999999999999999999999999999999999999998764
No 9
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.6e-79 Score=564.09 Aligned_cols=449 Identities=33% Similarity=0.546 Sum_probs=414.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh--hhhcCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE--DARSYG 99 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~--~~~~~g 99 (498)
.+|||+|||+||+|..||+++++.|++.+.||| ++.+||+|+|.||+|+|.|++.+.+++.+. +...+|
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEk---------r~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rG 108 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEK---------RGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRG 108 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEec---------cCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcC
Confidence 579999999999999999999999999999997 799999999999999999999999988775 466778
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
++.. ...+|...++..+...+.++...++..+++++|+++.|.+.+++++.+.+...+|+...+.++++||||||. .
T Consensus 109 i~vs-~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe--V 185 (506)
T KOG1335|consen 109 IDVS-SVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE--V 185 (506)
T ss_pred cccc-ceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc--c
Confidence 8765 678999999999999999999999999999999999999999999999999989888899999999999984 2
Q ss_pred CCCCCC----CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhC
Q 042564 180 APIPGQ----ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255 (498)
Q Consensus 180 p~i~g~----~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~ 255 (498)
+++||. +.+.+++.+++|.+.|++++|+|+|++|+|+++.+.++|.+||+++..+.+.+.+|.++++.+++.|+.+
T Consensus 186 ~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQ 265 (506)
T KOG1335|consen 186 TPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQ 265 (506)
T ss_pred CCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhc
Confidence 334564 3478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEcCccEEEEEEeCCe-EEEEECC---C--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 256 GINLHPRTTIKELIKSEEG-VKVITDH---G--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~~-~~v~~~~---g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
|+.+++++.|..+...+++ +.+++.+ + ++++||.+++++|++|.+..|++++.|++.|+.|.+.||..++|.+|
T Consensus 266 gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP 345 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVP 345 (506)
T ss_pred CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCC
Confidence 9999999999999988774 5555532 3 37999999999999999999999999999999999999999999999
Q ss_pred CeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCC
Q 042564 330 SIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM 409 (498)
Q Consensus 330 ~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~ 409 (498)
|||+|||+..+|++++.|..||..+.+.|.++. ...+|..+|.++|++|++++||+||++++++|+ .+.+.+.+|...
T Consensus 346 ~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~-~hv~ynciP~v~ythPEvawVG~TEeqlkeegi-~y~vgkfpF~aN 423 (506)
T KOG1335|consen 346 HIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH-GHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGI-KYKVGKFPFSAN 423 (506)
T ss_pred ceEEecccCCcchhhhhhhhhchhheeeecccC-cccccCCCCceeecccceeeeccchhhHHhcCc-ceEeeecccccc
Confidence 999999999999999999999999999998754 356788899999999999999999999999976 789999999998
Q ss_pred ccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHHH
Q 042564 410 RNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVT 484 (498)
Q Consensus 410 ~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~ 484 (498)
.++.+..+.+||+|+++|+++++|||+||+|++|.|+|++.++||+.|++.+|+++.+|+|||+||++.++-.++
T Consensus 424 sRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA 498 (506)
T KOG1335|consen 424 SRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAA 498 (506)
T ss_pred chhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHHh
Confidence 888888888999999999999999999999999999999999999999999999999999999999998854433
No 10
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=9.4e-78 Score=619.50 Aligned_cols=444 Identities=38% Similarity=0.643 Sum_probs=391.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||++||..|++.|++|+||| +..+||+|+|+||+|+|.++.++.....+++...+|+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIE----------k~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~ 116 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVE----------KDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFD 116 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEe----------cccccccccccCCCCCchhhhhcccHHHHHHHHhcCCC
Confidence 57999999999999999999999999999999 66899999999999999999999988888888888876
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEE--------------------------
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVT-------------------------- 155 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~-------------------------- 155 (498)
.. ..+||..++++.+....++...+...+++.||+++.|++.+.+++++.|.
T Consensus 117 ~~--~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (561)
T PTZ00058 117 TQ--FSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQ 194 (561)
T ss_pred cc--CccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeecccee
Confidence 32 47899999999999998888888888898999999999999999987642
Q ss_pred eCCCceEEEEcCeEEEcCCCCCCCCCCCCCCcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 156 QLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 156 ~~~g~~~~~~~d~liiAtG~~p~~p~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
..+|. .++||+||||||++|+.|++||.+.++++++++.+.. +++++|||+|++|+|+|..|.++|++|+++++.++
T Consensus 195 ~~~g~--~i~ad~lVIATGS~P~~P~IpG~~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 195 LDDGQ--VIEGKNILIAVGNKPIFPDVKGKEFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred cCCCc--EEECCEEEEecCCCCCCCCCCCceeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 22443 7999999999999999999999877788888887766 89999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC-eEEEEECC-CeEEEcCEEEEecCCCcCCCCCCcccCCceeC
Q 042564 236 PLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEE-GVKVITDH-GEEIVADVVLFATGRAPNTKRLNLKAVGVEVD 313 (498)
Q Consensus 236 ~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~v~~~~-g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~ 313 (498)
+++.+|+++.+.+.+.|++.||++++++.+.++..+++ ++.+.+.+ ++++++|.|++|+|++||++.++++..++. +
T Consensus 272 il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~ 350 (561)
T PTZ00058 272 LLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-T 350 (561)
T ss_pred ccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-c
Confidence 99989999999999999999999999999999986543 35555544 457999999999999999999877777665 4
Q ss_pred CCCCeEcCCCCCCCCCCeEEecccCC----------------------------------CCCChHHHHHHHHHHHHHHh
Q 042564 314 QTGAVKVDENSRTNVPSIWAVGDVTN----------------------------------RMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 314 ~~g~i~vd~~~~t~~~~iya~GD~~~----------------------------------~~~~~~~A~~~g~~aa~~i~ 359 (498)
++|+|.||+++||++|||||+|||++ .+++++.|.+||+++|+||+
T Consensus 351 ~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~ 430 (561)
T PTZ00058 351 PKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF 430 (561)
T ss_pred CCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999 57889999999999999999
Q ss_pred CCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCccccc----cCCceeEEEEEEECCCCeEE
Q 042564 360 GGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTIS----GRQEKTVMKLVVDAETEKVL 434 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~kl~~~~~~~~i~ 434 (498)
+......++..+|+++|++|++|+||+||+||+++ |+..+.+....+....++.. ...+++|+|+++++++++|+
T Consensus 431 g~~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~IL 510 (561)
T PTZ00058 431 GPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIK 510 (561)
T ss_pred CCCCcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEE
Confidence 86444456788999999999999999999999987 44457777666665554422 23467999999999999999
Q ss_pred EEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 435 GASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 435 G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
|+|++|++|.|+|+.+++||++++|++||.+++|+|||++|++.+++
T Consensus 511 G~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~ 557 (561)
T PTZ00058 511 GLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMA 557 (561)
T ss_pred EEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhc
Confidence 99999999999999999999999999999999999999999988754
No 11
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.1e-77 Score=612.53 Aligned_cols=450 Identities=29% Similarity=0.454 Sum_probs=402.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|+.+|||+||||||||++||..|++.|++|+|||+ ...+||+|+|+||+|+|.++..+.....+.....+|
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~---------~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g 71 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVER---------YSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHG 71 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEec---------CCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcC
Confidence 45679999999999999999999999999999993 347899999999999999999998888888888888
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+... ...+||..+..+++..++++...+...+++.||+++.+++.+++++.+.|...+|+..+++||+||||||++|+.
T Consensus 72 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 150 (471)
T PRK06467 72 IVFG-EPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQ 150 (471)
T ss_pred cccC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCC
Confidence 7654 457899999999999888888888888899999999999999999999998766644579999999999999974
Q ss_pred -CCCCCC-CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 180 -APIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 180 -p~i~g~-~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
|.+++. +.++++++.+.+...|++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+.+.|+++ |
T Consensus 151 ~p~~~~~~~~v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v 229 (471)
T PRK06467 151 LPFIPHDDPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-F 229 (471)
T ss_pred CCCCCCCCCcEEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-e
Confidence 445553 3478888888888889999999999999999999999999999999999999999999999999999988 9
Q ss_pred EEEcCccEEEEEEeCCeEEEEECC--C--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 258 NLHPRTTIKELIKSEEGVKVITDH--G--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
++++++.|.+++.+++++.+++.+ + +++++|.||+|+|++||++.+.++..+++++++|+|.||+++||++|+|||
T Consensus 230 ~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyA 309 (471)
T PRK06467 230 NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFA 309 (471)
T ss_pred EEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEE
Confidence 999999999998766666666543 2 369999999999999999987778899999999999999999999999999
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccc
Q 042564 334 VGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTI 413 (498)
Q Consensus 334 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
+|||++.+.+++.|.+||+++|+||++. ..+.++..+|+++|++|++++||+||+||+.+|+ ++.+....+....++.
T Consensus 310 iGDv~~~~~la~~A~~eG~~aa~~i~g~-~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~-~~~~~~~~~~~~~~~~ 387 (471)
T PRK06467 310 IGDIVGQPMLAHKGVHEGHVAAEVIAGK-KHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGI-EYETATFPWAASGRAI 387 (471)
T ss_pred ehhhcCCcccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEECCCceeEEECCHHHHHhcCC-CeEEEEEecCcchhhh
Confidence 9999998889999999999999999975 3456778899999999999999999999999866 6777777777666666
Q ss_pred ccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 414 SGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 414 ~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
....+++|+|+++|+++++|+|+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 388 ~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~ 456 (471)
T PRK06467 388 ASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAE 456 (471)
T ss_pred hCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHH
Confidence 566778999999999999999999999999999999999999999999999999999999999887543
No 12
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=3.4e-77 Score=613.49 Aligned_cols=447 Identities=34% Similarity=0.551 Sum_probs=400.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|+.+|||+||||||||++||+.|++.|++|+||| +..+||+|+|+||+|+|.++..+...........+|
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 71 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIE----------RGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYG 71 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcC
Confidence 5667999999999999999999999999999999 668999999999999999999999988888888888
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
+.......+||..+..+......++...+...+++. +++++.+++.+++++++.+ ++. +++||+||||||++|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v---~~~--~~~~d~lViATGs~p~ 146 (463)
T PRK06370 72 VSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV---GGE--TLRAKRIFINTGARAA 146 (463)
T ss_pred cccCccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE---CcE--EEEeCEEEEcCCCCCC
Confidence 865433578999999999988888777777888887 9999999998888888777 443 7899999999999999
Q ss_pred CCCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 179 RAPIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 179 ~p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
.|++||.+. ++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+++.|
T Consensus 147 ~p~i~G~~~~~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~G 226 (463)
T PRK06370 147 IPPIPGLDEVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREG 226 (463)
T ss_pred CCCCCCCCcCceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCC
Confidence 999999754 677888877777899999999999999999999999999999999999998899999999999999999
Q ss_pred CEEEcCccEEEEEEeCCeEEEEE--C-CCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 257 INLHPRTTIKELIKSEEGVKVIT--D-HGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~--~-~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
|++++++.|.++..++++..+.+ . +++++++|.||+|+|++||++.+.+++.|++++++|+|.||+++||++|||||
T Consensus 227 V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyA 306 (463)
T PRK06370 227 IDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYA 306 (463)
T ss_pred CEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEE
Confidence 99999999999987665544443 2 34579999999999999999966678889999999999999999999999999
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccc
Q 042564 334 VGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTI 413 (498)
Q Consensus 334 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 413 (498)
+|||++.+.+.+.|.+||+++|+||++..+...++..+|+.+|++|+++++|+||+||+++|+ ++.+....+....+++
T Consensus 307 iGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~-~~~~~~~~~~~~~~~~ 385 (463)
T PRK06370 307 AGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGR-RVLVGTRPMTRVGRAV 385 (463)
T ss_pred eeecCCCcccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCC-CeEEEEEecCcchhHH
Confidence 999999989999999999999999998645556778899999999999999999999999866 6888888888777776
Q ss_pred ccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 414 SGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 414 ~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
....+++|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 386 ~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~ 454 (463)
T PRK06370 386 EKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQ 454 (463)
T ss_pred hcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHH
Confidence 566778999999999999999999999999999999999999999999999999999999999887544
No 13
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=2.1e-77 Score=613.30 Aligned_cols=459 Identities=40% Similarity=0.659 Sum_probs=398.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+||++||||||||+.+|+.|++.|++|+|||+.... .......+||+|+|+||+|+|.|+..+.......+...||+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~-~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPT-PLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC-CCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCccc
Confidence 589999999999999999999999999999941100 0011225899999999999999999999888877778888765
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
.....+||..++++++..+.++...+...++..+|+++.|.+.+++++++.|...+|....++||+||||||++|+.|++
T Consensus 81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~i 160 (484)
T TIGR01438 81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGI 160 (484)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCC
Confidence 43357899999999999999988888888999999999999999999999887655544579999999999999999999
Q ss_pred CCC-CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEc
Q 042564 183 PGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 183 ~g~-~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
||. +..+++++++.+...|++++|||+|++|+|+|..|+++|.+|+++.+ +.+++.+|+++.+.+++.|++.||++++
T Consensus 161 pG~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~~ 239 (484)
T TIGR01438 161 PGAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFKR 239 (484)
T ss_pred CCccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEEe
Confidence 997 44578888888888899999999999999999999999999999998 5778889999999999999999999999
Q ss_pred CccEEEEEEeCCeEEEEECCC---eEEEcCEEEEecCCCcCCCCCCcccCCceeCC-CCCeEcCCCCCCCCCCeEEeccc
Q 042564 262 RTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQ-TGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 262 ~~~v~~i~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~-~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
++.+.++...++.+.+++.++ +++++|.|++|+|++||++.+.+++.|+++++ +|+|.||+++||++|+|||+|||
T Consensus 240 ~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv 319 (484)
T TIGR01438 240 QFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDI 319 (484)
T ss_pred CceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEEEe
Confidence 999999987666666666555 37999999999999999998888899999975 48999999999999999999999
Q ss_pred CC-CCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCcccccc
Q 042564 338 TN-RMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISG 415 (498)
Q Consensus 338 ~~-~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~~~~ 415 (498)
+. .+.+++.|.+||+++|+||++......++..+|+.+|++|++++||+||+||+++ ++..+.+....+.+..+++..
T Consensus 320 ~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 399 (484)
T TIGR01438 320 LEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPS 399 (484)
T ss_pred cCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhhHhhC
Confidence 96 5788999999999999999976554566788999999999999999999999986 333567776677666555443
Q ss_pred CC--ceeEEEEEEE-CCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHH
Q 042564 416 RQ--EKTVMKLVVD-AETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSV 483 (498)
Q Consensus 416 ~~--~~~~~kl~~~-~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~ 483 (498)
.. +.+|+|++++ +++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++...
T Consensus 400 ~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~ 470 (484)
T TIGR01438 400 RDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVT 470 (484)
T ss_pred CCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhhh
Confidence 33 5789999996 56899999999999999999999999999999999999999999999999886543
No 14
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=9.4e-77 Score=605.15 Aligned_cols=440 Identities=30% Similarity=0.499 Sum_probs=389.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+||++||||||+|.+||..+ .|++|+||| +..+||+|+|+||+|+|.|+..++....+++...||+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie----------~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 68 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVE----------KGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDA 68 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEe----------CCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccC
Confidence 48999999999999998763 599999999 678999999999999999999999998888888888764
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHH-HHHH-HHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGI-YKRL-LSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
. ...+||..++.++....+++... .... ++..+++++.|++.+++++++.+. +|+ .++||+||||||++|+.|
T Consensus 69 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~--~g~--~~~~d~lViATGs~p~~p 143 (451)
T PRK07846 69 E-LDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTG--DGE--EITADQVVIAAGSRPVIP 143 (451)
T ss_pred C-CCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEEC--CCC--EEEeCEEEEcCCCCCCCC
Confidence 2 45789999999998888887543 3444 677899999999999988888773 444 799999999999999999
Q ss_pred CCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 181 PIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
++||.+. +++.+++..+...|++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+ +.||+
T Consensus 144 ~i~g~~~~~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~ 222 (451)
T PRK07846 144 PVIADSGVRYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWD 222 (451)
T ss_pred CCCCcCCccEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeE
Confidence 9998643 56888888888889999999999999999999999999999999999999889999998887655 56899
Q ss_pred EEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccC
Q 042564 259 LHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~ 338 (498)
+++++.+.++..+++++.+.+.+|+++++|.|++|+|++||++++++++.+++++++|+|.||+++||++|||||+|||+
T Consensus 223 i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~ 302 (451)
T PRK07846 223 VRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVS 302 (451)
T ss_pred EEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecC
Confidence 99999999998766667777888889999999999999999999877889999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhCCCC-CCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCC
Q 042564 339 NRMNLTPVALMEGTCFAKTVFGGQP-CKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ 417 (498)
Q Consensus 339 ~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (498)
+.+++++.|.+||+++++||++... ...++..+|+.+|++|++++||+||+||++.|+ ++.+....+....+++....
T Consensus 303 ~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~ 381 (451)
T PRK07846 303 SPYQLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGL-DITVKVQNYGDVAYGWAMED 381 (451)
T ss_pred CCccChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCC-CEEEEEEecCcchhhhhCCC
Confidence 9989999999999999999997532 345677899999999999999999999999876 67777778887777665566
Q ss_pred ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCc-CCCCChhHHHHHHH
Q 042564 418 EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTV-GIHPSSAEEFVTMR 481 (498)
Q Consensus 418 ~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~-~~~pt~~e~~~~~~ 481 (498)
+++|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.++. ++|||++|.+.++.
T Consensus 382 ~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~ 446 (451)
T PRK07846 382 TTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENAL 446 (451)
T ss_pred CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999875 79999999887643
No 15
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.4e-76 Score=603.82 Aligned_cols=444 Identities=30% Similarity=0.496 Sum_probs=391.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhh--hhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELED--ARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~--~~~~g~ 100 (498)
+|||+||||||||++||..|++.|++|+|||+ .+.+||+|+|+||+|+|.++..+.....+.. ...+|+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~---------~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi 73 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEG---------RSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGI 73 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEec---------CCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCc
Confidence 59999999999999999999999999999993 3679999999999999999999887765543 456776
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.. ...++|.+++.++...+.++....+..+++.+|+++.|++.+.+++++.|...+|+..+++||+||||||++|.
T Consensus 74 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~-- 149 (466)
T PRK06115 74 EV--KPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT-- 149 (466)
T ss_pred cc--cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC--
Confidence 54 35789999999999888888877888888889999999998889999888776665457999999999999985
Q ss_pred CCCCCC----cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 181 PIPGQE----LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 181 ~i~g~~----~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
++||.+ .++++++.+.+...|++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.|++.|
T Consensus 150 ~ipg~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~g 229 (466)
T PRK06115 150 PLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQG 229 (466)
T ss_pred CCCCCCCCCCeEECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 345542 3577888887777899999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEcCccEEEEEEeCCeEEEEEC---C--CeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCe
Q 042564 257 INLHPRTTIKELIKSEEGVKVITD---H--GEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSI 331 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~---~--g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~i 331 (498)
|++++++.|.++..+++++.+.+. + ++.+++|.|++|+|++||++.+.++..+++++++| +.||++++|++|+|
T Consensus 230 V~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~I 308 (466)
T PRK06115 230 MKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGV 308 (466)
T ss_pred CEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCE
Confidence 999999999999876555554432 2 35799999999999999999877788899988776 77899999999999
Q ss_pred EEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcc
Q 042564 332 WAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRN 411 (498)
Q Consensus 332 ya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~ 411 (498)
||+|||++.+++++.|.+||+++|+||++. ....++..+|.++|++|++++||+||+||++.|+ ++.+....|....+
T Consensus 309 yA~GD~~~~~~la~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~-~~~~~~~~~~~~~~ 386 (466)
T PRK06115 309 WVIGDVTSGPMLAHKAEDEAVACIERIAGK-AGEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGR-AYKVGKFPFTANSR 386 (466)
T ss_pred EEeeecCCCcccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEECCcccEEeeCCHHHHHHCCC-CEEEEEEecccChh
Confidence 999999999999999999999999999975 3446778899999999999999999999999865 67777777887777
Q ss_pred ccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 412 TISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 412 ~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+.....+.+|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 387 ~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~ 457 (466)
T PRK06115 387 AKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAM 457 (466)
T ss_pred hHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHH
Confidence 76666778999999999999999999999999999999999999999999999999999999999887554
No 16
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.1e-75 Score=600.21 Aligned_cols=446 Identities=30% Similarity=0.481 Sum_probs=392.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g~ 100 (498)
.+|||+||||||||++||++|++.|++|+||| +..+||+|.++||+|+|.++..+.+...+. ....+|.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie----------~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi 72 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVE----------KKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGI 72 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCC
Confidence 35999999999999999999999999999999 668999999999999999998887776654 3556666
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
. ....++|..+..+++...++........++..+|+.+.+++.+++++.+.|...+|+..+++||+||||||++|+.|
T Consensus 73 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~ 150 (466)
T PRK07818 73 S--GEVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL 150 (466)
T ss_pred C--cCcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC
Confidence 5 24578999999998888877777666677778999999999999999999987666556799999999999999765
Q ss_pred CCCCC---CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 181 PIPGQ---ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 181 ~i~g~---~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
||. ..+++.++.......|++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|+++||
T Consensus 151 --pg~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV 228 (466)
T PRK07818 151 --PGTSLSENVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGV 228 (466)
T ss_pred --CCCCCCCcEEchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCC
Confidence 443 235677766656667899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccEEEEEEeCCeEEEEEC--CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 258 NLHPRTTIKELIKSEEGVKVITD--HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~--~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
++++++.|.++..+++.+.+.+. +| +++++|.|++|+|++||++.+.+++.|++++++|+|.||+++||++|+|||
T Consensus 229 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyA 308 (466)
T PRK07818 229 KILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYA 308 (466)
T ss_pred EEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEE
Confidence 99999999999876655555543 56 369999999999999999987788899999988999999999999999999
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHHhCCCCCCC-CCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccc
Q 042564 334 VGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKP-DYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNT 412 (498)
Q Consensus 334 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~-~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~ 412 (498)
+|||++.+++++.|..||++||+||++...... ++..+|.++|++|++++||+||+||+.+|+ ++.+...+|....++
T Consensus 309 iGD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~ 387 (466)
T PRK07818 309 IGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGY-DVKVAKFPFTANGKA 387 (466)
T ss_pred EeecCCCcccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCC-cEEEEEEECCccchh
Confidence 999999889999999999999999997654333 778899999999999999999999999876 677778778777777
Q ss_pred cccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 413 ISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 413 ~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
.....+.+|+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|.+.++..
T Consensus 388 ~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 457 (466)
T PRK07818 388 HGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFH 457 (466)
T ss_pred hhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHH
Confidence 6566788999999999999999999999999999999999999999999999999999999999887544
No 17
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=8.9e-76 Score=611.68 Aligned_cols=454 Identities=26% Similarity=0.379 Sum_probs=390.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhh---hcCC
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDA---RSYG 99 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~---~~~g 99 (498)
+|||+|||+||||++||.++++.|++|+|||+ . +..+||+|+|+||+|+|.|++.++..+.++.. ..||
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~------~--~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~G 187 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTG------D--DDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYG 187 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC------C--CCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCC
Confidence 79999999999999999999999999999992 0 12699999999999999999999988887765 4577
Q ss_pred ccc-----------------ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCC-------cEEEEeEEEEEeCCEEEEE
Q 042564 100 WEV-----------------HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAG-------VKLYEGEGKIVGPNEVEVT 155 (498)
Q Consensus 100 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------v~~~~~~~~~i~~~~~~v~ 155 (498)
+.. .....+||..+.++.+..+..+...+...+++.+ ++++.|.+.+++++++.+.
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~ 267 (659)
T PTZ00153 188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE 267 (659)
T ss_pred eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence 651 1345789999999999999998888888887764 8999999999999998875
Q ss_pred eCCCceEEEEcCeEEEcCCCCCCCCCCCCCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 156 QLDGTKLSYSAKHILIATGSRAQRAPIPGQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 156 ~~~g~~~~~~~d~liiAtG~~p~~p~i~g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
. +|+ ++.||+||||||++|+.|++++.+ .++++++.+.+...+++++|||+|++|+|+|..|.++|.+|+++++.
T Consensus 268 ~-~g~--~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~ 344 (659)
T PTZ00153 268 K-SGK--EFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYS 344 (659)
T ss_pred c-CCE--EEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 2 443 799999999999999998766543 37888888888888999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhCCCEEEcCccEEEEEEeCCe--EEEEECC-------C--------eEEEcCEEEEecC
Q 042564 234 ELPLRGFDDEMRAVVARNL-EGRGINLHPRTTIKELIKSEEG--VKVITDH-------G--------EEIVADVVLFATG 295 (498)
Q Consensus 234 ~~~l~~~~~~~~~~l~~~l-~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~-------g--------~~i~~D~vi~a~G 295 (498)
+++++.+|+++.+.+.+.+ ++.||++++++.|.++..+++. +.+.+.+ + +++++|.|++|+|
T Consensus 345 ~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG 424 (659)
T PTZ00153 345 PQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG 424 (659)
T ss_pred CcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEEC
Confidence 9999999999999998876 6789999999999999865543 4454321 1 2699999999999
Q ss_pred CCcCCCCCCcccCCceeCCCCCeEcCCCCCCC------CCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCC-------
Q 042564 296 RAPNTKRLNLKAVGVEVDQTGAVKVDENSRTN------VPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQ------- 362 (498)
Q Consensus 296 ~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~------~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~------- 362 (498)
++||++.+.++..++++++ |+|.||++|||+ +|||||+|||++.+++++.|.+||+++++||++..
T Consensus 425 r~Pnt~~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~ 503 (659)
T PTZ00153 425 RKPNTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNIN 503 (659)
T ss_pred cccCCccCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCCCccccccc
Confidence 9999998878888998875 899999999997 69999999999999999999999999999999752
Q ss_pred -----CCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCC-CCEEEEEEecCCCccccccCC-------------------
Q 042564 363 -----PCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGK-GDILVFTSSFNPMRNTISGRQ------------------- 417 (498)
Q Consensus 363 -----~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------- 417 (498)
....+|..+|+++|++|++++||+||+||++.++ .++.+....|....+++....
T Consensus 504 ~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~ 583 (659)
T PTZ00153 504 VENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNT 583 (659)
T ss_pred cccccccccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhcccccccccccccccccccccc
Confidence 3345678899999999999999999999999853 245666666665554432222
Q ss_pred ---ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHHHHHHHh
Q 042564 418 ---EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVA 488 (498)
Q Consensus 418 ---~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~~~~ 488 (498)
+++|+|+++++++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++.....++.
T Consensus 584 ~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~~~~ 657 (659)
T PTZ00153 584 VDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIAGVR 657 (659)
T ss_pred ccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999988766655543
No 18
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=3.2e-75 Score=599.70 Aligned_cols=449 Identities=29% Similarity=0.447 Sum_probs=398.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||++||+.|++.|++|+|||+ ...+||+|.+.||+|+|.++..+...........| ..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~---------~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~-~~ 73 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIER---------YRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLY-SS 73 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEec---------cccccccccccCCCCHHHHHHHHHHHHHHhhhhhh-cc
Confidence 469999999999999999999999999999993 35799999999999999998877665544443333 11
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
......++|..++.+.....+++...+...+.+.+++++.+++.+++++.+.|...+|+...++||+||||||++|+.|+
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~ 153 (461)
T PRK05249 74 YRVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPP 153 (461)
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCC
Confidence 12234678999999999888888888888888899999999999999999999876665457999999999999999988
Q ss_pred CCCCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEE
Q 042564 182 IPGQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 182 i~g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 259 (498)
+++.+ .++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+|+++.+.+.+.+++.||++
T Consensus 154 ~~~~~~~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v 233 (461)
T PRK05249 154 DVDFDHPRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTI 233 (461)
T ss_pred CCCCCCCeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEE
Confidence 77653 3678888888878899999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCC
Q 042564 260 HPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN 339 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 339 (498)
++++.+.++..+++++.+++.+|+++++|.|++|+|++||++.+.+++.+++++++|+|.||+++||+.|||||+|||++
T Consensus 234 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~ 313 (461)
T PRK05249 234 RHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIG 313 (461)
T ss_pred EECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCC
Confidence 99999999987766777777888889999999999999999987778899999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCce
Q 042564 340 RMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEK 419 (498)
Q Consensus 340 ~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (498)
.+++++.|.+||+++|+||++. .....+..+|+++|+.|++++||+||+||++.|+ ++.+....+....++...+.+.
T Consensus 314 ~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 391 (461)
T PRK05249 314 FPSLASASMDQGRIAAQHAVGE-ATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKV-PYEVGRARFKELARAQIAGDNV 391 (461)
T ss_pred CcccHhHHHHHHHHHHHHHcCC-CcccccCCCCeEEECCCcceEecCCHHHHHHcCC-CeEEEEEccccccceeecCCCC
Confidence 8889999999999999999964 3456678899999999999999999999999865 6777777787777776666778
Q ss_pred eEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 420 TVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 420 ~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 392 g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 454 (461)
T PRK05249 392 GMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAAL 454 (461)
T ss_pred cEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998877543
No 19
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=3.9e-75 Score=596.78 Aligned_cols=446 Identities=28% Similarity=0.435 Sum_probs=400.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.|++||||||+|+.+|..|++.|.+|+||| +..+||+|+++||+|+|.++..++.....+....+|+...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e----------~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~ 71 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIE----------RDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFI 71 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEE----------ccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccc
Confidence 489999999999999999999999999999 5678999999999999999999998888888888887642
Q ss_pred --cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEE----EeCCEEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 104 --EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKI----VGPNEVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 104 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~----i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
....+||..+..+.....+.+...+...+++.+|+++.+++.+ ++++.+.|.+.+|+..++.||+||||||++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 72 DDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASP 151 (466)
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCC
Confidence 2457899999999998888888788888888999999999998 7788888887666545799999999999999
Q ss_pred CCCCCCCC--CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhC
Q 042564 178 QRAPIPGQ--ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255 (498)
Q Consensus 178 ~~p~i~g~--~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~ 255 (498)
..|+.++. +.+++.++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|+++
T Consensus 152 ~~~p~~~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~ 231 (466)
T PRK07845 152 RILPTAEPDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARR 231 (466)
T ss_pred CCCCCCCCCCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHC
Confidence 87765433 4477888888877789999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEec
Q 042564 256 GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVG 335 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~G 335 (498)
||++++++.+.+++.+++++.+.+.+|+++++|.|++++|++||++.+.+++.+++++++|+|.||+++||++|||||+|
T Consensus 232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~G 311 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAG 311 (466)
T ss_pred CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEe
Confidence 99999999999998766677777888889999999999999999998778889999999999999999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccccc
Q 042564 336 DVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISG 415 (498)
Q Consensus 336 D~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~ 415 (498)
||++.+++++.|..||+++++|+++....+..+..+|+.+|++|++++||+||+||+.+|+ ++.+....+....++...
T Consensus 312 D~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~ 390 (466)
T PRK07845 312 DCTGVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEV-PARTVMLPLATNPRAKMS 390 (466)
T ss_pred eccCCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCC-ceEEEEEecccCchhhhc
Confidence 9999999999999999999999997654455678899999999999999999999999865 577777677766666555
Q ss_pred CCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHH
Q 042564 416 RQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 480 (498)
Q Consensus 416 ~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~ 480 (498)
..+++|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++
T Consensus 391 ~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 455 (466)
T PRK07845 391 GLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEA 455 (466)
T ss_pred CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHH
Confidence 66789999999999999999999999999999999999999999999999999999999987654
No 20
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.8e-75 Score=598.87 Aligned_cols=447 Identities=30% Similarity=0.421 Sum_probs=392.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+||++||||||||+++|..|++.|.+|+|||+ ...+||+|+|+||+|+|.++..+...+.....+.+|+.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~---------~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~ 85 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEG---------ADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVE 85 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEc---------cCcceeEeccccccccHHHHHHHHHHHHHhhccccCcc
Confidence 469999999999999999999999999999993 34799999999999999999999888777666666765
Q ss_pred cccccccCHHHHHHHHHHHHHHHhH-HHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNG-IYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
.. .+.++|..+..+......++.. .+...++.. +++++.|++.+++++.+.|...+|+..+++||+||||||++|+.
T Consensus 86 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 164 (479)
T PRK14727 86 AV-APSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTI 164 (479)
T ss_pred cC-CCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCC
Confidence 32 4578999999888887776643 355556654 89999999999999999998777654579999999999999999
Q ss_pred CCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 180 APIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 180 p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
|++||.+. .++..+.+.....|++++|||+|++|+|+|..|.++|.+|+++++. .+++.+++++.+.+.+.+++.||
T Consensus 165 p~i~G~~~~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV 243 (479)
T PRK14727 165 PPIPGLMDTPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFREDPLLGETLTACFEKEGI 243 (479)
T ss_pred CCCCCcCccceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCC
Confidence 99999743 4566666666667899999999999999999999999999999885 67778999999999999999999
Q ss_pred EEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEeccc
Q 042564 258 NLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
++++++.+.++..+++.+.+.+.++ ++++|.||+|+|+.||+..+.++..|++++++|+|.||+++||++|||||+|||
T Consensus 244 ~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~ 322 (479)
T PRK14727 244 EVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDC 322 (479)
T ss_pred EEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeec
Confidence 9999999999987666666666665 589999999999999999877788899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCC
Q 042564 338 TNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ 417 (498)
Q Consensus 338 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (498)
++.+.+.+.|..||+++|.||++.. ...++..+|+++|++|++++||+||+||+..|+ ++.+....+....+++....
T Consensus 323 ~~~~~~~~~A~~~G~~aa~~i~g~~-~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~ 400 (479)
T PRK14727 323 SDLPQFVYVAAAAGSRAGINMTGGN-ATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGI-ETISRVLTMENVPRALANFE 400 (479)
T ss_pred CCcchhhhHHHHHHHHHHHHHcCCC-cccccccCCcEEEecCceeeeeCCHHHHHHcCC-ceEEEEEEcccCchhhhcCC
Confidence 9988899999999999999999754 345677789999999999999999999999876 67777777777767666556
Q ss_pred ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 418 EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 418 ~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+++|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 401 ~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~ 465 (479)
T PRK14727 401 TDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQ 465 (479)
T ss_pred CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999887654
No 21
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=1.8e-75 Score=596.47 Aligned_cols=440 Identities=30% Similarity=0.514 Sum_probs=382.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+||++|||+||+|+.||.. ..|++|+||| +..+||+|+|+||+|+|.|+.+++..+.+++...||+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie----------~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 69 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVE----------KGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDA 69 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEe----------CCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeC
Confidence 5999999999999998654 4699999999 678999999999999999999999999998888888763
Q ss_pred ccccccCHHHHHHHHHH-HHHHHhHH-HHHHH--HhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTD-EILRLNGI-YKRLL--SNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
. ...+||..+++++.. ....+... ....+ ++.+|+++.|++++.+++.+.+ .+|+ +++||+||||||++|.
T Consensus 70 ~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~--~~g~--~~~~d~lIiATGs~p~ 144 (452)
T TIGR03452 70 E-IDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRT--GDGE--EITGDQIVIAAGSRPY 144 (452)
T ss_pred C-CCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEE--CCCc--EEEeCEEEEEECCCCC
Confidence 2 357899999999877 55554332 22222 3479999999999998877766 3444 7899999999999999
Q ss_pred CCCCCCCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 179 RAPIPGQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 179 ~p~i~g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
.|++.+.. .++++++++++.+.+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+ +.|
T Consensus 145 ~p~~~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~g 223 (452)
T TIGR03452 145 IPPAIADSGVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKK 223 (452)
T ss_pred CCCCCCCCCCEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcC
Confidence 88744322 367888888888889999999999999999999999999999999999888889999998887755 468
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecc
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD 336 (498)
|++++++.|.++..+++++.+++.+|+++++|.|++|+|++||++++++++.|++++++|+|.||+++||++|+|||+||
T Consensus 224 I~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD 303 (452)
T TIGR03452 224 WDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGD 303 (452)
T ss_pred CEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeec
Confidence 99999999999987666677777788889999999999999999998778899999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhCCCC-CCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccccc
Q 042564 337 VTNRMNLTPVALMEGTCFAKTVFGGQP-CKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISG 415 (498)
Q Consensus 337 ~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~ 415 (498)
|++.+++++.|.+||+++|+||++... ...++..+|+++|++|++++||+||+||+++|+ ++.+....+....+++..
T Consensus 304 ~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~-~~~~~~~~~~~~~~~~~~ 382 (452)
T TIGR03452 304 VSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGH-DITVKIQNYGDVAYGWAM 382 (452)
T ss_pred ccCcccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCC-CeEEEEecCCchhhHhhc
Confidence 999999999999999999999997643 346677899999999999999999999999865 677777777777776655
Q ss_pred CCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcC-cCCCCChhHHHHHHH
Q 042564 416 RQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDST-VGIHPSSAEEFVTMR 481 (498)
Q Consensus 416 ~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e~~~~~~ 481 (498)
..+.+|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.++ +|+|||++|.+.++.
T Consensus 383 ~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~ 449 (452)
T TIGR03452 383 EDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENAL 449 (452)
T ss_pred CCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHH
Confidence 677899999999999999999999999999999999999999999999996 789999999987643
No 22
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=6.8e-75 Score=596.33 Aligned_cols=445 Identities=29% Similarity=0.446 Sum_probs=390.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhh-cCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDAR-SYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~-~~g~ 100 (498)
.+|||+||||||||++||..|++.|++|+||| ++.+||+|+|+||+|+|.++..+......+... .+|+
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie----------~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~ 74 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIE----------RGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGL 74 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEE----------ccccccceecCCccccHHHHHHHHHHHHHhhccccCCc
Confidence 46999999999999999999999999999999 667999999999999999999988777666544 3455
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHH-HHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGI-YKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
... .+.++|..++.+.+.....+... +...+.+. +++++.+++.++|++.+.|.+.+|...+++||+||||||++|+
T Consensus 75 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~ 153 (468)
T PRK14694 75 SAQ-APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA 153 (468)
T ss_pred ccC-CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC
Confidence 422 35789999999988877766543 44555544 8999999999999999999887765457999999999999999
Q ss_pred CCCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 179 RAPIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 179 ~p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
.|++||.+. .+++++...+...+++++|||+|++|+|+|..|+++|.+|+++++ +++++.+++++.+.+.+.+++.|
T Consensus 154 ~p~i~G~~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~G 232 (468)
T PRK14694 154 EPPVPGLAETPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREG 232 (468)
T ss_pred CCCCCCCCCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCC
Confidence 999999753 466777777777789999999999999999999999999999987 46778899999999999999999
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecc
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD 336 (498)
|++++++.+.++..+++.+.+.+.++ ++++|.|++|+|++||.+++.+++++++. ++|+|.||+++||++|||||+||
T Consensus 233 I~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~GD 310 (468)
T PRK14694 233 IEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAGD 310 (468)
T ss_pred CEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEEEee
Confidence 99999999999987665555665554 69999999999999999987677788886 47899999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccC
Q 042564 337 VTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGR 416 (498)
Q Consensus 337 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
|++.+.+.+.|..||++||.||++.. ...++..+|.++|++|++++||+||+||+.+|+ ++.+...++....+++...
T Consensus 311 ~~~~~~~~~~A~~~G~~aa~~i~~~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~ 388 (468)
T PRK14694 311 CTDQPQFVYVAAAGGSRAAINMTGGD-ASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGY-DTDSRTLDLENVPRALVNF 388 (468)
T ss_pred cCCCcccHHHHHHHHHHHHHHhcCCC-cccccCCCCeEEECCCCeEEeeCCHHHHHHcCC-ceEEEEEecccchhhhhcC
Confidence 99999999999999999999999753 456677899999999999999999999999876 6777777887777777666
Q ss_pred CceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 417 QEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 417 ~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
.+.+|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 389 ~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 454 (468)
T PRK14694 389 DTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQ 454 (468)
T ss_pred CCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999887554
No 23
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=6.1e-74 Score=590.34 Aligned_cols=450 Identities=32% Similarity=0.512 Sum_probs=394.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|...|||+||||||||++||++|++.|++|+||| +..+||+|++.||+|+|.++..++....+.....+|
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie----------~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 70 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVE----------KGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFG 70 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEE----------ccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcC
Confidence 4567999999999999999999999999999999 568999999999999999999998888877777787
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCC-------EEEEEeCCCceEEEEcCeEEEc
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN-------EVEVTQLDGTKLSYSAKHILIA 172 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~-------~~~v~~~~g~~~~~~~d~liiA 172 (498)
+... .+.++|..+..+++..++.+.......+++.+++++.+++.+++++ ++.|.+.+|+...++||+||||
T Consensus 71 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViA 149 (472)
T PRK05976 71 ISVS-GPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIA 149 (472)
T ss_pred ccCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEe
Confidence 7643 3578999999999988888887788888889999999999999998 8889877764458999999999
Q ss_pred CCCCCCCCCCCCC--CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHH
Q 042564 173 TGSRAQRAPIPGQ--ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVAR 250 (498)
Q Consensus 173 tG~~p~~p~i~g~--~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~ 250 (498)
||++|..++.... ..++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+
T Consensus 150 TGs~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~ 229 (472)
T PRK05976 150 TGSRPVELPGLPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVAR 229 (472)
T ss_pred CCCCCCCCCCCCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHH
Confidence 9999975432222 23678888888777899999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEcCccEEEEEEe-CCe-EEEEECCC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKS-EEG-VKVITDHG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRT 326 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~-~~~-~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t 326 (498)
.+++.||++++++.|.++..+ +++ ..+.+.+| +++++|.+++|+|++|+++.+.++..++..+ +|+|.||++++|
T Consensus 230 ~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~-~g~i~Vd~~l~t 308 (472)
T PRK05976 230 LLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVE-GGFIQIDDFCQT 308 (472)
T ss_pred HHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceec-CCEEEECCCccc
Confidence 999999999999999999752 333 33344566 3699999999999999998766677777764 689999999999
Q ss_pred CCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEec
Q 042564 327 NVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSF 406 (498)
Q Consensus 327 ~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~ 406 (498)
+.|+|||+|||++.+++++.|.+||+++|+||++......++..+|..+|++|+++++|++|+||++.|+ ++.+....+
T Consensus 309 s~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~-~~~~~~~~~ 387 (472)
T PRK05976 309 KERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGY-DVKVGKFPF 387 (472)
T ss_pred CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCC-CEEEEEEEC
Confidence 9999999999998888999999999999999998654556677799999999999999999999999865 677777778
Q ss_pred CCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 407 NPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 407 ~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
....++.....+++|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 388 ~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 463 (472)
T PRK05976 388 AANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAAL 463 (472)
T ss_pred CcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHH
Confidence 7777776566789999999999999999999999999999999999999999999999999999999999876543
No 24
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=5.5e-74 Score=590.12 Aligned_cols=443 Identities=35% Similarity=0.535 Sum_probs=389.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
|||+||||||||++||..|++.|++|+||| +..+||+|+|+||+|+|.++..+...+...+. .||+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie----------~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~-~~g~~~- 68 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVE----------RGPLGGTCVNVGCVPSKMLLRAAEVAHYARKP-PFGGLA- 68 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEe----------CCcccCCeeeecEEccHHHHHHHHHHHHhhcc-Cccccc-
Confidence 799999999999999999999999999999 56699999999999999999998877766653 466543
Q ss_pred cccccCHHHHHHHHHHHHHHHhH-HHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNG-IYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
....++|..++.++++....+.. .+...+++.+++++.+++.+++++.+.+. +| ...++||+||||||++|+.|++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~--~g-~~~~~~~~lIiATGs~p~~p~i 145 (463)
T TIGR02053 69 ATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVD--LG-REVRGAKRFLIATGARPAIPPI 145 (463)
T ss_pred CCCccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEc--CC-eEEEEeCEEEEcCCCCCCCCCC
Confidence 24578999999998888877654 36677888899999999999888877663 33 2368999999999999999999
Q ss_pred CCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEE
Q 042564 183 PGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 183 ~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
||.+. ++++++++.+...+++++|||+|.+|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+++.||+++
T Consensus 146 ~G~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 225 (463)
T TIGR02053 146 PGLKEAGYLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVV 225 (463)
T ss_pred CCcccCceECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEE
Confidence 99754 6778888877777899999999999999999999999999999999999998999999999999999999999
Q ss_pred cCccEEEEEEeCCeEEEEEC---CCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEeccc
Q 042564 261 PRTTIKELIKSEEGVKVITD---HGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~~---~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
+++.|.++..+++...+.+. +++++++|.|++|+|++|+.+.+.++..+++++++|+|.||+++||++|||||+|||
T Consensus 226 ~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~ 305 (463)
T TIGR02053 226 TSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV 305 (463)
T ss_pred cCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeec
Confidence 99999999876555555543 235799999999999999999666788899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCC
Q 042564 338 TNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ 417 (498)
Q Consensus 338 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (498)
++.+.+++.|.+||+++|+||++......++..+|.++|++|++++||+||++|+++|+ ++.+....+....++.....
T Consensus 306 ~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~ 384 (463)
T TIGR02053 306 TGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGI-ECDCRTLPLTNVPRARINRD 384 (463)
T ss_pred CCCcccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCC-CeEEEEEecccchHHHhcCC
Confidence 99988999999999999999997534456667799999999999999999999999866 67777777777667655567
Q ss_pred ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 418 EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 418 ~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+++|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 385 ~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~ 449 (463)
T TIGR02053 385 TRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQ 449 (463)
T ss_pred CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999998877554
No 25
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=8.6e-74 Score=586.60 Aligned_cols=443 Identities=29% Similarity=0.484 Sum_probs=394.4
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc-
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH- 103 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~- 103 (498)
+|+||||||||++||.+|++.|++|+||| +..+||+|+|+||+|+|.++..++..+..+....+|+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie----------~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~ 71 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLID----------EADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPN 71 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEE----------CCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccC
Confidence 79999999999999999999999999999 6779999999999999999999998888888888888643
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP 183 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i~ 183 (498)
....+||..+..+.+...+++....+..+.+.+++++.|++.+++++.+.|...++ ..+++||+||||||++|+.|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~-~~~~~~d~lviATGs~p~~~p~~ 150 (458)
T PRK06912 72 GSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDK-EEVVDAEQFIIAAGSEPTELPFA 150 (458)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCC-cEEEECCEEEEeCCCCCCCCCCC
Confidence 34578999999999998888887788888888999999999999999999977554 34799999999999999888887
Q ss_pred CCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEc
Q 042564 184 GQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHP 261 (498)
Q Consensus 184 g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 261 (498)
+.+ .++++++.+.+...|++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.|++.||++++
T Consensus 151 ~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~ 230 (458)
T PRK06912 151 PFDGKWIINSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFT 230 (458)
T ss_pred CCCCCeEEcchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEE
Confidence 753 367888888888889999999999999999999999999999999999999989999999999999999999999
Q ss_pred CccEEEEEEeCCeEEEEECCC-eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC
Q 042564 262 RTTIKELIKSEEGVKVITDHG-EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR 340 (498)
Q Consensus 262 ~~~v~~i~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 340 (498)
++.|.++..++..+.+...++ +++++|.|++|+|++|+.+.++++..++.++++| |.||+++||+.|||||+|||++.
T Consensus 231 ~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~ 309 (458)
T PRK06912 231 GAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGG 309 (458)
T ss_pred CCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCC
Confidence 999999976655444443322 3699999999999999999877788899988766 99999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCcee
Q 042564 341 MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKT 420 (498)
Q Consensus 341 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (498)
+++++.|.+||+++|.++++.+ ...++..+|.++|++|++++||+||+||+++++ ++.+....|....+++....+.+
T Consensus 310 ~~la~~A~~~g~~aa~~~~g~~-~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~g 387 (458)
T PRK06912 310 IQLAHVAFHEGTTAALHASGED-VKVNYHAVPRCIYTSPEIASVGLTEKQAREQYG-DIRIGEFPFTANGKALIIGEQTG 387 (458)
T ss_pred cccHHHHHHHHHHHHHHHcCCC-CCCCcCCCCeEEecCchhEEeeCCHHHHHHCCC-CeEEEEEecCcchhHhhcCCCce
Confidence 9999999999999999999753 345577899999999999999999999999855 67777767777777766667889
Q ss_pred EEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 421 VMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 421 ~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
|+||++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++++|||++|.+.++.
T Consensus 388 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 448 (458)
T PRK06912 388 KVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEAL 448 (458)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988754
No 26
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-73 Score=588.15 Aligned_cols=444 Identities=38% Similarity=0.616 Sum_probs=396.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+|||+||||||||++||..|++.|++|+|+| +..+||+|.++||+|+|.++..+...........||+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE----------~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~ 72 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVE----------KEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIK 72 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEe----------ccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcc
Confidence 46999999999999999999999999999999 55599999999999999999999888888888888876
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
.. ...++|..+.++.+...+.+...+...+++.+|+++.+++.+++++.+.|...++. ..++||+||||||++|..|+
T Consensus 73 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~-~~~~~d~lViAtGs~p~~~p 150 (462)
T PRK06416 73 AE-NVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGE-QTYTAKNIILATGSRPRELP 150 (462)
T ss_pred cC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEeCCCCCCCCC
Confidence 43 45789999999999888888777888888899999999999999999988754432 47999999999999997653
Q ss_pred CCCCC----cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 182 IPGQE----LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 182 i~g~~----~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
|.+ .++++++...+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+++.||
T Consensus 151 --g~~~~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV 228 (462)
T PRK06416 151 --GIEIDGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGI 228 (462)
T ss_pred --CCCCCCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCC
Confidence 432 35688888887778899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccEEEEEEeCCeEEEEECCC---eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEe
Q 042564 258 NLHPRTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAV 334 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~ 334 (498)
++++++.|.++..+++.+.+.+.++ +++++|.||+|+|++|+.+++.+++.+++++ +|+|.||+++||++|+|||+
T Consensus 229 ~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAi 307 (462)
T PRK06416 229 KIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAI 307 (462)
T ss_pred EEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEe
Confidence 9999999999987766677776665 6799999999999999999877788999998 79999999999999999999
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccc
Q 042564 335 GDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTIS 414 (498)
Q Consensus 335 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 414 (498)
|||++.+++++.|.+||+++|+||++.. ...++..+|..+|++|+++++|+||+||+.+|+ ++.+....+....++..
T Consensus 308 GD~~~~~~~~~~A~~~g~~aa~ni~~~~-~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~-~~~~~~~~~~~~~~~~~ 385 (462)
T PRK06416 308 GDIVGGPMLAHKASAEGIIAAEAIAGNP-HPIDYRGIPAVTYTHPEVASVGLTEAKAKEEGF-DVKVVKFPFAGNGKALA 385 (462)
T ss_pred eecCCCcchHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCCceEEEeCCHHHHHhcCC-CeEEEEEecCcChHhHh
Confidence 9999888899999999999999999743 445577899999999999999999999999866 67788777777676665
Q ss_pred cCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 415 GRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 415 ~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
...+++|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+.++..
T Consensus 386 ~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 453 (462)
T PRK06416 386 LGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAAL 453 (462)
T ss_pred cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999876543
No 27
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.2e-73 Score=601.87 Aligned_cols=446 Identities=29% Similarity=0.445 Sum_probs=389.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhc-CCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARS-YGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~-~g~ 100 (498)
.+|||+||||||||++||..|++.|++|+||| +..+||+|+|+||+|+|.++..+........... +|+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie----------~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~ 166 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIE----------RGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGI 166 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEe----------cCcceeeccccCccccHHHHHHHHHHHHHhcccccCCc
Confidence 36999999999999999999999999999999 5689999999999999999999887776654432 466
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhH-HHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNG-IYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
... .+.++|..+..+....+.++.. .+...+... +|+++.+++.+++++.+.|...+|+...++||+||||||++|.
T Consensus 167 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~ 245 (561)
T PRK13748 167 AAT-VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA 245 (561)
T ss_pred cCC-CCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC
Confidence 432 4568999999988877776654 244556665 8999999999999999999876664457999999999999999
Q ss_pred CCCCCCCCc--ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCC
Q 042564 179 RAPIPGQEL--AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG 256 (498)
Q Consensus 179 ~p~i~g~~~--~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~G 256 (498)
.|++||.+. +++..+.+.....+++++|||+|++|+|+|..|.++|.+|+++++. .+++.+|+++.+.+.+.|++.|
T Consensus 246 ~p~i~g~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~g 324 (561)
T PRK13748 246 VPPIPGLKETPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEG 324 (561)
T ss_pred CCCCCCCCccceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccccCHHHHHHHHHHHHHCC
Confidence 999999764 5666666666667899999999999999999999999999999985 5677789999999999999999
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecc
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGD 336 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD 336 (498)
|++++++.+.++..+++.+.+.+.++ ++++|.|++|+|++||+..+.+++.|++++++|+|.||+++||++|||||+||
T Consensus 325 I~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD 403 (561)
T PRK13748 325 IEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGD 403 (561)
T ss_pred CEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeee
Confidence 99999999999987666666666555 59999999999999999987778899999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccC
Q 042564 337 VTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGR 416 (498)
Q Consensus 337 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (498)
|++.+.+.+.|..||++||.||++.. ...++..+|..+|++|++++||+||++|+++|+ ++.+....+....+++...
T Consensus 404 ~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~ 481 (561)
T PRK13748 404 CTDQPQFVYVAAAAGTRAAINMTGGD-AALDLTAMPAVVFTDPQVATVGYSEAEAHHDGI-ETDSRTLTLDNVPRALANF 481 (561)
T ss_pred cCCCccchhHHHHHHHHHHHHHcCCC-cccCCCCCCeEEEccCCceeeeCCHHHHHHcCC-CeEEEEEecccCchhhhcC
Confidence 99999999999999999999999754 345677889999999999999999999999866 5777777777777766655
Q ss_pred CceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 417 QEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 417 ~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
..++|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 482 ~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~ 547 (561)
T PRK13748 482 DTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQ 547 (561)
T ss_pred CCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999887554
No 28
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=6.2e-74 Score=590.53 Aligned_cols=456 Identities=36% Similarity=0.604 Sum_probs=386.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCC
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYG 99 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g 99 (498)
+.+|||+||||||||++||..|++.|++|+|||+.... ....+..+||+|+|+||+|+|+++..+......+ ....||
T Consensus 3 ~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~-~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPS-TQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCC-CccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 34699999999999999999999999999999931000 0011225899999999999999999988877665 345677
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+... . .++|..+.++....+.++...+...++..+|+++.+.+.+.+++.+.+... +....++||+||||||++|+.
T Consensus 82 ~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~-~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 82 WKTS-S-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDN-SQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CCCC-C-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeC-CCceEEECCEEEEecCCCCCC
Confidence 7543 2 789999999999998888777777777789999999999999988887642 223479999999999999998
Q ss_pred CC-CCCCC-cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 180 AP-IPGQE-LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 180 p~-i~g~~-~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
|+ +||.+ ..+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++.+. .+++.+|+++.+.+.+.|++.||
T Consensus 159 p~~i~G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV 237 (499)
T PTZ00052 159 PEDVPGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGT 237 (499)
T ss_pred CCCCCCccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCC
Confidence 85 89875 45788888888778899999999999999999999999999999884 66788999999999999999999
Q ss_pred EEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEeccc
Q 042564 258 NLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
++++++.+.++...++.+.+.+.+|+++++|.|++++|++||++++.++..+++++++|++.+++. +|++|+|||+|||
T Consensus 238 ~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv 316 (499)
T PTZ00052 238 LFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDV 316 (499)
T ss_pred EEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEe
Confidence 999999999998765566777888888999999999999999998877889999999998877777 9999999999999
Q ss_pred CC-CCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCCCcccccc
Q 042564 338 TN-RMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISG 415 (498)
Q Consensus 338 ~~-~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~~~~~~~~ 415 (498)
+. .+.+++.|.+||+++|+||++......++..+|+++|++|++++||+||+||++. ++..+.++...+.....+...
T Consensus 317 ~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (499)
T PTZ00052 317 VEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVH 396 (499)
T ss_pred cCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhccc
Confidence 95 5789999999999999999986655677888999999999999999999999987 333566666666443322111
Q ss_pred C---------------CceeEEEEEEEC-CCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHH
Q 042564 416 R---------------QEKTVMKLVVDA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479 (498)
Q Consensus 416 ~---------------~~~~~~kl~~~~-~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 479 (498)
. .+++|+|+++++ ++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~~ 476 (499)
T PTZ00052 397 REKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFMN 476 (499)
T ss_pred cccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhEE
Confidence 1 257899999997 489999999999999999999999999999999999999999999998876
Q ss_pred HHH
Q 042564 480 MRS 482 (498)
Q Consensus 480 ~~~ 482 (498)
+..
T Consensus 477 ~~~ 479 (499)
T PTZ00052 477 LSV 479 (499)
T ss_pred EEe
Confidence 543
No 29
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.5e-73 Score=581.62 Aligned_cols=431 Identities=30% Similarity=0.509 Sum_probs=375.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+||||||||++||+.|++.|++|+|||+ . ...+||+|.+.||+|+|.+++.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~------~--~~~~GG~~~~~gcip~k~l~~~~~--------------- 59 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQ------S--NAMYGGTCINIGCIPTKTLVHDAQ--------------- 59 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcC------C--CCccceeEeeccccchHHHHHHhc---------------
Confidence 59999999999999999999999999999993 1 125799999999999998876542
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHH-HHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIY-KRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
...+|.....+.+.....+.... ..+.+..+++++.+++.+++++.+.|...++. .++.||+||||||++|..|+
T Consensus 60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~-~~~~~d~lviATGs~p~~p~ 135 (441)
T PRK08010 60 ---QHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGN-LEIHGEKIFINTGAQTVVPP 135 (441)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCe-EEEEeCEEEEcCCCcCCCCC
Confidence 13567777766665555444322 23334459999999999999999999876653 46999999999999999999
Q ss_pred CCCCC---cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCE
Q 042564 182 IPGQE---LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN 258 (498)
Q Consensus 182 i~g~~---~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 258 (498)
+||.+ .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+++.||+
T Consensus 136 i~G~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~ 215 (441)
T PRK08010 136 IPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVD 215 (441)
T ss_pred CCCccCCCCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCE
Confidence 99974 367778787777788999999999999999999999999999999999999989999999999999999999
Q ss_pred EEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccC
Q 042564 259 LHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVT 338 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~ 338 (498)
+++++.|.++..+++.+.+..+++ ++++|.|++|+|++||++.+.+++.|++++++|+|.||+++||++|||||+|||+
T Consensus 216 v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~ 294 (441)
T PRK08010 216 IILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVT 294 (441)
T ss_pred EEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecC
Confidence 999999999987666666666555 4899999999999999998777888999998899999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhCC-CCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCC
Q 042564 339 NRMNLTPVALMEGTCFAKTVFGG-QPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ 417 (498)
Q Consensus 339 ~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (498)
+.+++.+.|..||+++++||++. .....++..+|+++|++|++++||+||+||+++|+ ++.+...++....++...+.
T Consensus 295 ~~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~ 373 (441)
T PRK08010 295 GGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGA-DIQVVTLPVAAIPRARVMND 373 (441)
T ss_pred CCccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCC-CeEEEEEecCcChhhhhcCC
Confidence 99999999999999999999975 33345677899999999999999999999999866 68888888888777766677
Q ss_pred ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 418 EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 418 ~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+.+|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+.+++|||++|.+.++..
T Consensus 374 ~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 438 (441)
T PRK08010 374 TRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 (441)
T ss_pred CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999887654
No 30
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=9.4e-73 Score=581.05 Aligned_cols=454 Identities=29% Similarity=0.500 Sum_probs=390.6
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhh-hcC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDA-RSY 98 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~-~~~ 98 (498)
|+.+||++||||||||++||++|++.|.+|+|||+.. . ......+||+|.|.||+|+|.++..++....+.+. ..+
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~-~--~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~ 77 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWK-N--PKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH 77 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEeccc-C--CCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence 3456999999999999999999999999999999300 0 00125789999999999999999998887766654 667
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe----CCEEEEEeCCCceEEEEcCeEEEcCC
Q 042564 99 GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG----PNEVEVTQLDGTKLSYSAKHILIATG 174 (498)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~----~~~~~v~~~~g~~~~~~~d~liiAtG 174 (498)
|.... ...+||..++.+++.....+...+...++..+|+++.+++.+++ ...+.+...++ .+++||+||||||
T Consensus 78 G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~--~~~~~d~lViATG 154 (475)
T PRK06327 78 GIHVD-GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDE--TVITAKHVIIATG 154 (475)
T ss_pred CccCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCC--eEEEeCEEEEeCC
Confidence 76643 35789999999999888888888888888899999999999887 55666643333 3799999999999
Q ss_pred CCCCCCC-CCCC-CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHH
Q 042564 175 SRAQRAP-IPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNL 252 (498)
Q Consensus 175 ~~p~~p~-i~g~-~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l 252 (498)
++|+.++ ++.. ..++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++.+.+.+.+
T Consensus 155 s~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l 234 (475)
T PRK06327 155 SEPRHLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAF 234 (475)
T ss_pred CCCCCCCCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHH
Confidence 9997554 3322 2366778888777789999999999999999999999999999999999988889999999999999
Q ss_pred HhCCCEEEcCccEEEEEEeCCeEEEEECC--C--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCC
Q 042564 253 EGRGINLHPRTTIKELIKSEEGVKVITDH--G--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNV 328 (498)
Q Consensus 253 ~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~ 328 (498)
++.||++++++.|.++..+++.+.+.+.+ | +.+++|.+++|+|++|+++.+.++..+++++++|+|.||++++|++
T Consensus 235 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~ 314 (475)
T PRK06327 235 TKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNV 314 (475)
T ss_pred HHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCC
Confidence 99999999999999998776666666544 3 4699999999999999999776788899999999999999999999
Q ss_pred CCeEEecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCC
Q 042564 329 PSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNP 408 (498)
Q Consensus 329 ~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~ 408 (498)
|+|||+|||+..+++++.|..||+.+|+||++.. ...++..+|+.+|++|++++||+||++|+++|+ ++.+....+..
T Consensus 315 ~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~-~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~-~~~~~~~~~~~ 392 (475)
T PRK06327 315 PNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK-GHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGV-EYKAGKFPFMA 392 (475)
T ss_pred CCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCC-CEEEEEEcccc
Confidence 9999999999988899999999999999999753 345677899999999999999999999999866 67777777776
Q ss_pred CccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 409 MRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 409 ~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
..++.....+.+|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++.
T Consensus 393 ~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 465 (475)
T PRK06327 393 NGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAA 465 (475)
T ss_pred cchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHH
Confidence 6666656677899999999999999999999999999999999999999999999999999999999988654
No 31
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.4e-72 Score=580.06 Aligned_cols=441 Identities=34% Similarity=0.500 Sum_probs=388.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
++|||+||||||||++||..|++.|++|+||| +..+||+|+++||+|+|.+++.+...........+|+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~ 71 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIE----------KGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIH 71 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEe----------CCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45999999999999999999999999999999 66789999999999999999999888888888888876
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHH-HHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIY-KRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.. ...++|..++.+.......+...+ ...+...+++++.+.+.+++++.+.+ +++ .++||+||||||+. .|
T Consensus 72 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v---~~~--~~~~d~lIiATGs~--~p 143 (460)
T PRK06292 72 AD-GPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV---NGE--RIEAKNIVIATGSR--VP 143 (460)
T ss_pred cC-CCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE---CcE--EEEeCEEEEeCCCC--CC
Confidence 43 257899999999888887776655 55667789999999999999988777 443 79999999999998 44
Q ss_pred CCCCCC-----cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhC
Q 042564 181 PIPGQE-----LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR 255 (498)
Q Consensus 181 ~i~g~~-----~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~ 255 (498)
++||.+ .++++++.+.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+.+.++++
T Consensus 144 ~ipg~~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~ 223 (460)
T PRK06292 144 PIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE 223 (460)
T ss_pred CCCCCcccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc
Confidence 455542 356778888788889999999999999999999999999999999999999889999999999999999
Q ss_pred CCEEEcCccEEEEEEeCC-eEEEEECCC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeE
Q 042564 256 GINLHPRTTIKELIKSEE-GVKVITDHG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIW 332 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~-~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iy 332 (498)
|++++++.+.+++.+++ .+.++..++ +++++|.|++|+|++||++.+.++..+++++++|+|.||+++||++||||
T Consensus 224 -I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~Iy 302 (460)
T PRK06292 224 -FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIY 302 (460)
T ss_pred -cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEE
Confidence 99999999999976554 344433333 47999999999999999998778889999999999999999999999999
Q ss_pred EecccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccc
Q 042564 333 AVGDVTNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNT 412 (498)
Q Consensus 333 a~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~ 412 (498)
|+|||++.+++++.|.+||+++|.||++.......+..+|+.+|++|++++||+||+||++.|+ ++.+....+....++
T Consensus 303 A~GD~~~~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~-~~~~~~~~~~~~~~~ 381 (460)
T PRK06292 303 AAGDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGI-DYVVGEVPFEAQGRA 381 (460)
T ss_pred EEEecCCCccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCC-CeEEEEEecccchHH
Confidence 9999999888999999999999999997534445677899999999999999999999999865 677777778777777
Q ss_pred cccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 413 ISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 413 ~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
.....+++|+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++|+|||++|.+.++..
T Consensus 382 ~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 451 (460)
T PRK06292 382 RVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALR 451 (460)
T ss_pred HhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHH
Confidence 6566788999999999999999999999999999999999999999999999999999999999987654
No 32
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-71 Score=567.61 Aligned_cols=430 Identities=32% Similarity=0.498 Sum_probs=376.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+||||||||++||..|++.|++|+|||+ .+ ..+||+|++.||+|+|.++..++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~------~~--~~~GG~c~~~gciP~k~~~~~~~~-------------- 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEE------SK--AMYGGTCINIGCIPTKTLLVAAEK-------------- 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEec------CC--cccceeeecCccccchHhhhhhhc--------------
Confidence 59999999999999999999999999999993 11 137999999999999999876541
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
.++|..+..+.+....++.......+.+.+|+++.+++.+++++++.+...+ ...++.||+||||||++|+.|++
T Consensus 61 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~-~~~~~~~d~vViATGs~~~~p~i 135 (438)
T PRK07251 61 ----NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGD-EKIELTAETIVINTGAVSNVLPI 135 (438)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCC-CcEEEEcCEEEEeCCCCCCCCCC
Confidence 3477888877777777766666677888899999999999988888876422 23479999999999999999999
Q ss_pred CCCC---cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEE
Q 042564 183 PGQE---LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 183 ~g~~---~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 259 (498)
||.+ .++++.++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++..++++.+.+.+.+++.||++
T Consensus 136 ~G~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i 215 (438)
T PRK07251 136 PGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITF 215 (438)
T ss_pred CCcCCCCcEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEE
Confidence 9973 3678888888777899999999999999999999999999999999999998899999999999999999999
Q ss_pred EcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCC
Q 042564 260 HPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTN 339 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 339 (498)
++++.|.++..+++.+.+.. +++++++|.+|+|+|++|+.+.+++++.++.++++|+|.||+++||++|||||+|||++
T Consensus 216 ~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~ 294 (438)
T PRK07251 216 LLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNG 294 (438)
T ss_pred EcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCC
Confidence 99999999987655555543 56689999999999999999987777788988888999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCC-CCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCc
Q 042564 340 RMNLTPVALMEGTCFAKTVFGGQP-CKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQE 418 (498)
Q Consensus 340 ~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (498)
.+.+.+.|..+|++++.++++.+. ....+..+|+.+|++|+++++|+||+||++.|+ ++.+....+....++......
T Consensus 295 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~ 373 (438)
T PRK07251 295 GPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGL-PYAVKELLVAAMPRAHVNNDL 373 (438)
T ss_pred CcccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCC-CeEEEEEECCcchhhhhcCCC
Confidence 989999999999999999987643 223556799999999999999999999999865 677777777777776556667
Q ss_pred eeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 419 KTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 419 ~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
++|+|+++|+++++|||+|++|++|.|+|+.++++|++++|++||.+++|+|||++|.+.++.
T Consensus 374 ~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 374 RGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999987754
No 33
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.1e-70 Score=566.33 Aligned_cols=447 Identities=36% Similarity=0.589 Sum_probs=398.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||+||||||||++||++|++.|++|+||| +..+||+|.+.||+|+|.++..++....+.....+++..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie----------~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~ 70 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVE----------KEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEV 70 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEe----------cCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCC
Confidence 3899999999999999999999999999999 667899999999999999999998887777777777654
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI 182 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i 182 (498)
. ...++|..+..+......++...+...+++.+++++.+++.+++++.+.+...++. .+++||+||+|||++|+.|++
T Consensus 71 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~-~~~~~d~lVlAtG~~p~~~~~ 148 (461)
T TIGR01350 71 E-NVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGE-ETLTAKNIIIATGSRPRSLPG 148 (461)
T ss_pred C-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEcCCCCCCCCCC
Confidence 3 35789999999888888888888888888899999999999999999988775542 479999999999999998887
Q ss_pred C-CCC--cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEE
Q 042564 183 P-GQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL 259 (498)
Q Consensus 183 ~-g~~--~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 259 (498)
| +.+ .++++++.+.+...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++.+++++.+.+.+.+++.||++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i 228 (461)
T TIGR01350 149 PFDFDGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKI 228 (461)
T ss_pred CCCCCCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 6 433 3778888888878899999999999999999999999999999999999999899999999999999999999
Q ss_pred EcCccEEEEEEeCCeEEEEECCC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEeccc
Q 042564 260 HPRTTIKELIKSEEGVKVITDHG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDV 337 (498)
Q Consensus 260 ~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~ 337 (498)
++++.|.++..+++++.+.+.+| +++++|.+|+|+|+.|+.+.+.+++.++.++++|+|.||+++||++|+|||+|||
T Consensus 229 ~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~ 308 (461)
T TIGR01350 229 LTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDV 308 (461)
T ss_pred EeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeec
Confidence 99999999987777777776666 4799999999999999998655788899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCC
Q 042564 338 TNRMNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQ 417 (498)
Q Consensus 338 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (498)
+..+++++.|.+||+.+|+||.+......++..+|...|++|+++.+|++|++|+.+|+ ++.+....+....++.....
T Consensus 309 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~ 387 (461)
T TIGR01350 309 IGGPMLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEAGY-DVKIGKFPFAANGKALALGE 387 (461)
T ss_pred CCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhCCC-CeEEEEEeCccchHHHhcCC
Confidence 99888999999999999999997654355677899999999999999999999999865 67777777766666655567
Q ss_pred ceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHHHHH
Q 042564 418 EKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRS 482 (498)
Q Consensus 418 ~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~ 482 (498)
+++|+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+..+..
T Consensus 388 ~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~ 452 (461)
T TIGR01350 388 TDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAAL 452 (461)
T ss_pred CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999876543
No 34
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-71 Score=503.81 Aligned_cols=458 Identities=42% Similarity=0.713 Sum_probs=409.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
...+||++|||||.+||+||.+++..|.+|.++|-= .+.+...++++||+|+|.||||+|.|-.++-+.+.+.+...||
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV-~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV-KPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec-ccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 345799999999999999999999999999999910 0112334689999999999999999999998899999999999
Q ss_pred ccccc-ccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 100 WEVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
|.... ....||..+....+..+..++-.++-.+++..|+++...+.|++++++..+..+|+...++++.++||||.+|+
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPr 174 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPR 174 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCC
Confidence 99876 57889999999999998888777777788889999999999999999999988887788999999999999999
Q ss_pred CCCCCCC-CcccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCC
Q 042564 179 RAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 179 ~p~i~g~-~~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 257 (498)
.|.|||. ++.+|++|++.+...|.+-+|||+|++++|+|.+|+.+|.+|++..|+ -+++.||+++++.+.+.++++||
T Consensus 175 Yp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~Gi 253 (503)
T KOG4716|consen 175 YPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEERGI 253 (503)
T ss_pred CCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-eecccccHHHHHHHHHHHHHhCC
Confidence 9999995 778999999999999999999999999999999999999999999995 46788999999999999999999
Q ss_pred EEEcCccEEEEEEeCCe-EEEEEC---CCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCC-CCCeEcCCCCCCCCCC
Q 042564 258 NLHPRTTIKELIKSEEG-VKVITD---HGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQ-TGAVKVDENSRTNVPS 330 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~-~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~-~g~i~vd~~~~t~~~~ 330 (498)
++.....+.+++.-+++ +.|... .++ +-.+|.|+||+|+.+.++.++|++.|+++++ .|.|.+|+.-+||+|+
T Consensus 254 kf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~ 333 (503)
T KOG4716|consen 254 KFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPY 333 (503)
T ss_pred ceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCc
Confidence 99999888888776655 444432 222 3568999999999999999999999999964 6789999999999999
Q ss_pred eEEecccCCC-CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHc-CCCCEEEEEEecCC
Q 042564 331 IWAVGDVTNR-MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNP 408 (498)
Q Consensus 331 iya~GD~~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-~~~~~~~~~~~~~~ 408 (498)
|||+||.... +.+++.|++.|+.+|+.++++.....+|..+|+.+||..+++.+||+|++|.+. |-+++++++..|.+
T Consensus 334 vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f~P 413 (503)
T KOG4716|consen 334 VYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKP 413 (503)
T ss_pred eEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEEeeccccc
Confidence 9999999964 899999999999999999998888899999999999999999999999999986 33489999999999
Q ss_pred CccccccCCc-eeEEEEEEEC-CCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcCCCCChhHHHHH
Q 042564 409 MRNTISGRQE-KTVMKLVVDA-ETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVGIHPSSAEEFVT 479 (498)
Q Consensus 409 ~~~~~~~~~~-~~~~kl~~~~-~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~ 479 (498)
+.+.++.++. .-|+|.+.+. ++.+|+|.|++||+|.|+++.|+.|++.++|..||.+++.+|||.+|.+..
T Consensus 414 ~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~Ft~ 486 (503)
T KOG4716|consen 414 LEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFTT 486 (503)
T ss_pred eEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccchhheeE
Confidence 9998766543 4599999885 467999999999999999999999999999999999999999999998764
No 35
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.8e-57 Score=462.98 Aligned_cols=403 Identities=19% Similarity=0.280 Sum_probs=309.5
Q ss_pred cEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCc-hhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 25 DLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGC-VPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~-~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+|||||||+||+.||.+|++. +.+|+|||++.. .. +..| +|. ..+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~------~~-------~~~~~lp~----~~~--------------- 50 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD------MS-------FANCALPY----YIG--------------- 50 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC------cc-------cccCCcch----hhc---------------
Confidence 799999999999999999885 689999994211 11 1111 121 000
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEE-eEEEEEeCCEEEEEeCC---CceEEEEcCeEEEcCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE-GEGKIVGPNEVEVTQLD---GTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~-~~~~~i~~~~~~v~~~~---g~~~~~~~d~liiAtG~~p 177 (498)
+ ....+...+.. ..+.+..+.++++.. .++..+|+....|...+ ++..+++||+||||||++|
T Consensus 51 --~-~~~~~~~~~~~----------~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 51 --E-VVEDRKYALAY----------TPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred --C-ccCCHHHcccC----------CHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence 0 00000000000 011233456899876 45778887665554432 2334579999999999999
Q ss_pred CCCCCCCCCccc---ChHHHhcc-----ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHH
Q 042564 178 QRAPIPGQELAI---TSDEALSL-----EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA 249 (498)
Q Consensus 178 ~~p~i~g~~~~~---~~~~~~~l-----~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~ 249 (498)
+.|++++. .++ +..+...+ ...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.
T Consensus 118 ~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~ 196 (438)
T PRK13512 118 NSLGFESD-ITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPIL 196 (438)
T ss_pred CCCCCCCC-CeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHH
Confidence 98876542 222 22333221 2357899999999999999999999999999999999888889999999999
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
+.|++.||++++++.|.++.. . .+++++|+.+++|.|++|+|++||+++ +++.|+.++++|+|.||+++||++|
T Consensus 197 ~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~~~--l~~~gl~~~~~G~i~Vd~~~~t~~~ 270 (438)
T PRK13512 197 DELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNSKF--IESSNIKLDDKGFIPVNDKFETNVP 270 (438)
T ss_pred HHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcChHH--HHhcCcccCCCCcEEECCCcccCCC
Confidence 999999999999999999953 2 466777888999999999999999987 6778899988899999999999999
Q ss_pred CeEEecccCC----------CCCChHHHHHHHHHHHHHHhCCCCC-CCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCC
Q 042564 330 SIWAVGDVTN----------RMNLTPVALMEGTCFAKTVFGGQPC-KPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGD 398 (498)
Q Consensus 330 ~iya~GD~~~----------~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~ 398 (498)
||||+|||++ ..++++.|.+||+++|+||+|.+.. ..++..+|++.|++|+++++|+||+||++. +
T Consensus 271 ~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~---~ 347 (438)
T PRK13512 271 NIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF---D 347 (438)
T ss_pred CEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccC---C
Confidence 9999999986 2467888999999999999975432 235677899999999999999999999875 3
Q ss_pred EEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHhcC-cCCCCChhHH
Q 042564 399 ILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPE-APEIMQGIAVALKCGATKAQFDST-VGIHPSSAEE 476 (498)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~-a~~~i~~~~~~i~~~~~~~~l~~~-~~~~pt~~e~ 476 (498)
+.+....+....... ...+.+|+|+++|+++++|||+|++|++ +.|+|+.++++|++++|++||.++ +++||+++..
T Consensus 348 ~~~~~~~~~~~~~~~-~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~ 426 (438)
T PRK13512 348 YKMVEVTQGAHANYY-PGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHP 426 (438)
T ss_pred cEEEEEecCCcCCCc-CCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCcc
Confidence 444444443333222 4567899999999999999999999996 899999999999999999999997 8899999976
Q ss_pred HHHHHHH
Q 042564 477 FVTMRSV 483 (498)
Q Consensus 477 ~~~~~~~ 483 (498)
+..+..+
T Consensus 427 ~~~~~~~ 433 (438)
T PRK13512 427 KDLINMI 433 (438)
T ss_pred ccHHHHH
Confidence 5444333
No 36
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=3.1e-56 Score=457.02 Aligned_cols=410 Identities=25% Similarity=0.347 Sum_probs=309.1
Q ss_pred cEEEECCChhHHHHHHHHHhCC--CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 25 DLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g--~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+|||||||+||+++|..|++.+ .+|+|||+ .+.... ..|. +|. ..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~------~~~~~~--~~~~----~~~---------------------~~ 48 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEK------TDIVSF--GACG----LPY---------------------FV 48 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEEC------CCccee--ecCC----Cce---------------------Ee
Confidence 6999999999999999999864 59999994 211110 0010 110 00
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEe-EEEEEeCC--EEEEEeC-CCceEEEEcCeEEEcCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG-EGKIVGPN--EVEVTQL-DGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~~~~i~~~--~~~v~~~-~g~~~~~~~d~liiAtG~~p~ 178 (498)
.+ ..+.. ..+.......+.+.+++++.+ .+..++.. .+.+... ++....++||+||||||++|.
T Consensus 49 ~~--~~~~~----------~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 49 GG--FFDDP----------NTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred cc--ccCCH----------HHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 00 00000 000111123345578998765 46677654 4444331 243233449999999999999
Q ss_pred CCCCCCCC--ccc---ChHHHhccc-----cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHH
Q 042564 179 RAPIPGQE--LAI---TSDEALSLE-----ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAV 247 (498)
Q Consensus 179 ~p~i~g~~--~~~---~~~~~~~l~-----~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~ 247 (498)
.|++||.+ .++ +..+..++. ..+++++|+|+|++|+|+|..+++.|.+|+++++.+.+++. +++++.+.
T Consensus 117 ~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~ 196 (444)
T PRK09564 117 IPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDV 196 (444)
T ss_pred CCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHH
Confidence 99999874 233 333333332 24689999999999999999999999999999999888874 89999999
Q ss_pred HHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCC
Q 042564 248 VARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTN 327 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~ 327 (498)
+.+.+++.||++++++.|.++..+++...+.++ +.++++|.+++|+|+.|+.++ +++.|++++++|+|.||++++|+
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~ 273 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADVVIVATGVKPNTEF--LEDTGLKTLKNGAIIVDEYGETS 273 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCEEEECcCCCcCHHH--HHhcCccccCCCCEEECCCcccC
Confidence 999999999999999999999654433344444 447999999999999999887 67889988888999999999999
Q ss_pred CCCeEEecccCCC----------CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCC
Q 042564 328 VPSIWAVGDVTNR----------MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKG 397 (498)
Q Consensus 328 ~~~iya~GD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~ 397 (498)
+|||||+|||+.. +++++.|.+||+++|+||++.+...+.....+...|++|+++++|+||+||++.|+
T Consensus 274 ~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~- 352 (444)
T PRK09564 274 IENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGI- 352 (444)
T ss_pred CCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCC-
Confidence 9999999999963 46788999999999999998654333333334556999999999999999999865
Q ss_pred CEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHhcCcCCC-CChhH
Q 042564 398 DILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPE-APEIMQGIAVALKCGATKAQFDSTVGIH-PSSAE 475 (498)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~-a~~~i~~~~~~i~~~~~~~~l~~~~~~~-pt~~e 475 (498)
++.+...... ....+....+.+|+|+++|+++++|+|+|++|++ +.|+|+.++++|++++|++||+++.++| |+++|
T Consensus 353 ~~~~~~~~~~-~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~ 431 (444)
T PRK09564 353 DYKTVFIKDK-NHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFAR 431 (444)
T ss_pred CeEEEEEecC-CCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCC
Confidence 4555544432 2233334567899999999999999999999995 8899999999999999999999999888 99999
Q ss_pred HHHHHHHHH
Q 042564 476 EFVTMRSVT 484 (498)
Q Consensus 476 ~~~~~~~~~ 484 (498)
.+..+..++
T Consensus 432 ~~~~~~~~~ 440 (444)
T PRK09564 432 TWDALNVAG 440 (444)
T ss_pred CcCHHHHHH
Confidence 876544443
No 37
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=4.3e-49 Score=401.75 Aligned_cols=340 Identities=25% Similarity=0.350 Sum_probs=276.2
Q ss_pred HHHhCCcEEEEe-EEEEEeCC--EEEEEeCCCceEEEE--cCeEEEcCCCCCCCCCCCCCC--cccC---hHHHhcc---
Q 042564 131 LLSNAGVKLYEG-EGKIVGPN--EVEVTQLDGTKLSYS--AKHILIATGSRAQRAPIPGQE--LAIT---SDEALSL--- 197 (498)
Q Consensus 131 ~~~~~gv~~~~~-~~~~i~~~--~~~v~~~~g~~~~~~--~d~liiAtG~~p~~p~i~g~~--~~~~---~~~~~~l--- 197 (498)
++.+.+++++.+ .+..+++. .+.+...++ ...+. ||+||||||++|..|++||.+ .+++ ..+...+
T Consensus 53 ~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~-~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~ 131 (427)
T TIGR03385 53 FIKKRGIDVKTNHEVIEVNDERQTVVVRNNKT-NETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQY 131 (427)
T ss_pred HHHhcCCeEEecCEEEEEECCCCEEEEEECCC-CCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHH
Confidence 345678998755 56677654 444433221 22566 999999999999999999964 2332 2222221
Q ss_pred --ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-CCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe
Q 042564 198 --EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG 274 (498)
Q Consensus 198 --~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~ 274 (498)
...+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||++++++.+.++..++.
T Consensus 132 l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~- 210 (427)
T TIGR03385 132 IDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER- 210 (427)
T ss_pred HhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC-
Confidence 1346899999999999999999999999999999988874 558899999999999999999999999999976443
Q ss_pred EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC----------CCCh
Q 042564 275 VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR----------MNLT 344 (498)
Q Consensus 275 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~----------~~~~ 344 (498)
+ +.+.+|+++++|.+|+|+|++|+.++ +++++++++++|+|.||++++|+.|+|||+|||+.. .+++
T Consensus 211 ~-v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 287 (427)
T TIGR03385 211 V-KVFTSGGVYQADMVILATGIKPNSEL--AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLA 287 (427)
T ss_pred E-EEEcCCCEEEeCEEEECCCccCCHHH--HHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeech
Confidence 3 56678889999999999999999987 677889998889999999999999999999999963 3578
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEEEE
Q 042564 345 PVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKL 424 (498)
Q Consensus 345 ~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl 424 (498)
+.|.+||+++|+||.|.......+..+|+.+|++|+++++|+||++|++.|+ ++.+....+....++. ...+.+|+|+
T Consensus 288 ~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~-~~~~~~~~~~~~~~~~-~~~~~g~~kl 365 (427)
T TIGR03385 288 WGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNI-DYKTVFVKAKTHANYY-PGNSPLHLKL 365 (427)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCC-CeEEEEEecCCCCCcC-CCCceEEEEE
Confidence 8999999999999998643333344678899999999999999999998765 4666555544433333 3567899999
Q ss_pred EEECCCCeEEEEEEECCC-hhHHHHHHHHHHHCCCCHHHHhcCcC-CCCChhHHH
Q 042564 425 VVDAETEKVLGASMCGPE-APEIMQGIAVALKCGATKAQFDSTVG-IHPSSAEEF 477 (498)
Q Consensus 425 ~~~~~~~~i~G~~~~g~~-a~~~i~~~~~~i~~~~~~~~l~~~~~-~~pt~~e~~ 477 (498)
++++++++|+|+|++|++ +.|+|+.++++|++++|++||.+++| .||.++..+
T Consensus 366 i~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~ 420 (427)
T TIGR03385 366 IYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVW 420 (427)
T ss_pred EEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCcc
Confidence 999999999999999998 99999999999999999999999986 578888654
No 38
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=3e-45 Score=394.26 Aligned_cols=388 Identities=18% Similarity=0.282 Sum_probs=292.8
Q ss_pred ccEEEECCChhHHHHHHHHHhC----CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 24 FDLFVIGAGSGGVRAARFSANF----GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~----g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
.+|||||+|+||+.+|.+|++. +++|+||++ .+.... ..|..+..+
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~------e~~~~Y-------~r~~L~~~~----------------- 53 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCE------EPRIAY-------DRVHLSSYF----------------- 53 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEEC------CCCCcc-------cCCcchHhH-----------------
Confidence 4799999999999999999763 579999994 221111 001000000
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
.. ..+. .+.......+.+.+|+++.++ +..+|+....|.+.+|. .++||+||||||+.|+
T Consensus 54 ---~~---~~~~-----------~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~--~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 54 ---SH---HTAE-----------ELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGR--TVFYDKLIMATGSYPW 114 (847)
T ss_pred ---cC---CCHH-----------HccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCc--EEECCEEEECCCCCcC
Confidence 00 0111 111112234556799999986 66788888888777765 7999999999999999
Q ss_pred CCCCCCCCc--c---cChHHHhccc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHH
Q 042564 179 RAPIPGQEL--A---ITSDEALSLE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVA 249 (498)
Q Consensus 179 ~p~i~g~~~--~---~~~~~~~~l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~ 249 (498)
.|++||.+. + .+.++...+. ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +|++..+.+.
T Consensus 115 ~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~ 194 (847)
T PRK14989 115 IPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLR 194 (847)
T ss_pred CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHH
Confidence 999999753 2 2556655432 35789999999999999999999999999999999988874 8999999999
Q ss_pred HHHHhCCCEEEcCccEEEEEEeC--CeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCC
Q 042564 250 RNLEGRGINLHPRTTIKELIKSE--EGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTN 327 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~ 327 (498)
+.|++.||++++++.+.+|..++ ....+.+.+|+.+++|.||+|+|++||.++ ++++|++++++|+|.||+++||+
T Consensus 195 ~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L--~~~~Gl~~~~~G~I~VD~~l~Ts 272 (847)
T PRK14989 195 RKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKL--ATQCGLAVAPRGGIVINDSCQTS 272 (847)
T ss_pred HHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchH--HhhcCccCCCCCcEEECCCCcCC
Confidence 99999999999999999997543 235678889999999999999999999986 67889999999999999999999
Q ss_pred CCCeEEecccCCC----CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCc-EEEeccCCeeEeeCCHHHHHHcCCCCEEEE
Q 042564 328 VPSIWAVGDVTNR----MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVP-CAVFCIPPLSVVGLSEEQAIEQGKGDILVF 402 (498)
Q Consensus 328 ~~~iya~GD~~~~----~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~-~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~ 402 (498)
+|||||+|||+.. ..+++.|.+||+++|+||+|.... ......+ ...+.+.+++++|... .... .....
T Consensus 273 ~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~-~~g~~~~~~lk~~G~~v~s~G~~~----~~~~-~~~~~ 346 (847)
T PRK14989 273 DPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENA-FEGADLSAKLKLLGVDVGGIGDAH----GRTP-GARSY 346 (847)
T ss_pred CCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcC-CCCcccceEEEECCcceEeccccc----CCCC-CceeE
Confidence 9999999999975 347889999999999999986533 3333344 2334456788888311 1000 01110
Q ss_pred EEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCCh--hHHHHHHHHHHHCCCCHHHHhcCcCC---CCCh-hHH
Q 042564 403 TSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEA--PEIMQGIAVALKCGATKAQFDSTVGI---HPSS-AEE 476 (498)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a--~~~i~~~~~~i~~~~~~~~l~~~~~~---~pt~-~e~ 476 (498)
. +......+|.|+++++++++|+|++++|+.+ .++++.+...+....+.++|....+. ||++ .|.
T Consensus 347 ~---------~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 417 (847)
T PRK14989 347 V---------YLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHAGSGKPSIGVDK 417 (847)
T ss_pred E---------EEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCCCccchhheecCCCCCCCCCcccccc
Confidence 0 1123456899999999999999999999954 78888887777777888888877665 8887 554
Q ss_pred H
Q 042564 477 F 477 (498)
Q Consensus 477 ~ 477 (498)
|
T Consensus 418 l 418 (847)
T PRK14989 418 L 418 (847)
T ss_pred C
Confidence 3
No 39
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=9.3e-41 Score=334.72 Aligned_cols=352 Identities=20% Similarity=0.260 Sum_probs=255.1
Q ss_pred ccEEEECCChhHHHHHHHHHh--CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 24 FDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~--~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+|+||||||+||+.+|..|++ .+.+|+||+++...+ . ..+..++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~------y-------~~~~l~~~~------------------- 50 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE------Y-------NKPDLSHVF------------------- 50 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC------c-------CcCcCcHHH-------------------
Confidence 589999999999999999988 456899999422110 0 000000000
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEe-EEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG-EGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
. ......++.. .....++++.+++++.+ .+..++.....+.+ ++. .+.||+||||||+.|+.|
T Consensus 51 -~--~~~~~~~~~~----------~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~-~~~--~~~yd~LVlATG~~~~~p 114 (377)
T PRK04965 51 -S--QGQRADDLTR----------QSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKS-QGN--QWQYDKLVLATGASAFVP 114 (377)
T ss_pred -h--CCCCHHHhhc----------CCHHHHHHhCCCEEECCCEEEEEECCCCEEEE-CCe--EEeCCEEEECCCCCCCCC
Confidence 0 0001111110 01223455679999876 47788877666665 433 799999999999999999
Q ss_pred CCCCCCcccC---hHHHhccc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHHHHH
Q 042564 181 PIPGQELAIT---SDEALSLE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVARNLE 253 (498)
Q Consensus 181 ~i~g~~~~~~---~~~~~~l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~ 253 (498)
++||.+.+++ ..++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.++
T Consensus 115 ~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~ 194 (377)
T PRK04965 115 PIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLT 194 (377)
T ss_pred CCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHH
Confidence 9999765433 33332221 24689999999999999999999999999999999988876 68889999999999
Q ss_pred hCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEE
Q 042564 254 GRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWA 333 (498)
Q Consensus 254 ~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya 333 (498)
+.||++++++.+.++..+++...+.+.+|+++++|.||+|+|.+|+.++ ++..|+..+. | |.||++++|+.|||||
T Consensus 195 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l--~~~~gl~~~~-g-i~vd~~l~ts~~~VyA 270 (377)
T PRK04965 195 EMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTAL--ARRAGLAVNR-G-IVVDSYLQTSAPDIYA 270 (377)
T ss_pred hCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHH--HHHCCCCcCC-C-EEECCCcccCCCCEEE
Confidence 9999999999999998776667788889999999999999999999986 5667887753 4 9999999999999999
Q ss_pred ecccCCCC----CChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCC
Q 042564 334 VGDVTNRM----NLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPM 409 (498)
Q Consensus 334 ~GD~~~~~----~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~ 409 (498)
+|||+... +.+..|.+||+++|+||+|.+.........+...+...++.++|....+ .....+
T Consensus 271 ~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~-------- 337 (377)
T PRK04965 271 LGDCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQRQ-----DLRWQI-------- 337 (377)
T ss_pred eeecEeECCceeehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCCCCC-----CceEEE--------
Confidence 99999642 3566789999999999998654322222233444556788888865321 001110
Q ss_pred ccccccCCceeEEEEEEECCCCeEEEEEEECCChhHH
Q 042564 410 RNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEI 446 (498)
Q Consensus 410 ~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~ 446 (498)
.......+.|+++ ++|+|+|+.++|+.+.+.
T Consensus 338 ----~~~~~~~~~~~~~--~~~~l~g~~~~g~~~~~~ 368 (377)
T PRK04965 338 ----NAESQGMVAKGVD--EAGQLRAFVVSEDRMKEA 368 (377)
T ss_pred ----EeCCCCeEEEEEc--cCCcEEEEEEEChhHHHH
Confidence 0122233556666 579999999999976543
No 40
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=6.7e-40 Score=330.29 Aligned_cols=360 Identities=19% Similarity=0.246 Sum_probs=258.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC--cEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA--KVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
..+|||||||+||++||..|++.|. +|+|++++...+ . .+-.+++..+ ..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~------y------~r~~l~~~~~-~~--------------- 54 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP------Y------ERPPLSKSML-LE--------------- 54 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC------C------CCCCCCHHHH-CC---------------
Confidence 4589999999999999999999775 899999422110 0 0000110000 00
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
. ..+ .. .+ .....+.+.+++++.++ +..+|.....|.+.+|. .+.||+||||||++|+.
T Consensus 55 ----~-~~~--~~---------~~--~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g~--~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 55 ----D-SPQ--LQ---------QV--LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGE--SWHWDQLFIATGAAARP 114 (396)
T ss_pred ----C-Ccc--cc---------cc--CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCCC--EEEcCEEEEccCCCCCC
Confidence 0 000 00 00 00122345789999885 67888887777777765 79999999999999988
Q ss_pred CCCCCC--Cccc---ChHHHhcccc---CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHH
Q 042564 180 APIPGQ--ELAI---TSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVAR 250 (498)
Q Consensus 180 p~i~g~--~~~~---~~~~~~~l~~---~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~ 250 (498)
+++++. +.++ +.+++..+.+ .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++.+.+.+.+
T Consensus 115 ~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~ 194 (396)
T PRK09754 115 LPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQ 194 (396)
T ss_pred CCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHH
Confidence 776553 2233 3556554433 4689999999999999999999999999999999988875 78888999999
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPS 330 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~ 330 (498)
.+++.||++++++.+.++.. ++.+.+.+.+|+++++|.||+++|.+||..+ +++.++..+ ++|.||+++||++||
T Consensus 195 ~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~--~gi~vd~~~~ts~~~ 269 (396)
T PRK09754 195 RHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISANDQL--AREANLDTA--NGIVIDEACRTCDPA 269 (396)
T ss_pred HHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhhHH--HHhcCCCcC--CCEEECCCCccCCCC
Confidence 99999999999999999975 4456678888999999999999999999876 466777654 569999999999999
Q ss_pred eEEecccCCC---------CCChHHHHHHHHHHHHHHhCCCCCCCCCCCCc--EEEeccCCeeEeeCCHHHHHHcCCCCE
Q 042564 331 IWAVGDVTNR---------MNLTPVALMEGTCFAKTVFGGQPCKPDYRDVP--CAVFCIPPLSVVGLSEEQAIEQGKGDI 399 (498)
Q Consensus 331 iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~--~~~~~~~~~~~vG~~e~~a~~~~~~~~ 399 (498)
|||+|||+.. .++|+.|.+||++||+||+|.... +...| |..+.+..+.++|....+ .+
T Consensus 270 IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~---~~~~p~~~~~~~~~~~~~~G~~~~~-------~~ 339 (396)
T PRK09754 270 IFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLP---LLPPPWFWSDQYSDNLQFIGDMRGD-------DW 339 (396)
T ss_pred EEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCC---CCCCCceEEEeCCccEEEeeCCCCC-------EE
Confidence 9999999852 346789999999999999986533 33333 444446789999975321 11
Q ss_pred EEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCH
Q 042564 400 LVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATK 460 (498)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~ 460 (498)
.+ .. ......|+.+++ ++|+|+|+..+|+.. -...+..+|+.+.++
T Consensus 340 ~~-~~----------~~~~~~~~~~~~--~~~~l~g~~~~~~~~--~~~~~~~~~~~~~~~ 385 (396)
T PRK09754 340 LC-RG----------NPETQKAIWFNL--QNGVLIGAVTLNQGR--EIRPIRKWIQSGKTF 385 (396)
T ss_pred EE-ec----------CCCCceEEEEEe--eCCEEEEEEEECCHH--HHHHHHHHHHCCCCC
Confidence 11 10 112223544444 468999999999842 234455567776653
No 41
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=4.6e-40 Score=355.07 Aligned_cols=369 Identities=20% Similarity=0.285 Sum_probs=270.2
Q ss_pred EEEECCChhHHHHHHHHHhC---CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 26 LFVIGAGSGGVRAARFSANF---GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 26 vvIIGgG~aGl~aA~~l~~~---g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
|||||||+||+.+|.+|++. +++|+|||+ .+.... ..|..+..+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~------e~~~~y-------~r~~L~~~l-------------------- 47 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGE------EPHPNY-------NRILLSSVL-------------------- 47 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeC------CCCCCc-------ccccccHHH--------------------
Confidence 68999999999999998874 569999994 221110 001000000
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
.+ ..++.++ .......+++.+++++.++ +..+|+....|.+.+|. ++.||+||||||+.|+.|+
T Consensus 48 ~g--~~~~~~l-----------~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~--~~~yD~LVlATGs~p~~p~ 112 (785)
T TIGR02374 48 QG--EADLDDI-----------TLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGR--TLSYDKLILATGSYPFILP 112 (785)
T ss_pred CC--CCCHHHc-----------cCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCc--EeeCCEEEECCCCCcCCCC
Confidence 00 0011111 1111233456799999885 77889888888887765 7999999999999999999
Q ss_pred CCCCCc--c---cChHHHhccc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHHHH
Q 042564 182 IPGQEL--A---ITSDEALSLE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVARNL 252 (498)
Q Consensus 182 i~g~~~--~---~~~~~~~~l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l 252 (498)
+||.+. + .+.++...+. ...++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++...+.+.+.+
T Consensus 113 ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l 192 (785)
T TIGR02374 113 IPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQREL 192 (785)
T ss_pred CCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHH
Confidence 999753 2 3444443322 34689999999999999999999999999999999988765 8999999999999
Q ss_pred HhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeE
Q 042564 253 EGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIW 332 (498)
Q Consensus 253 ~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iy 332 (498)
++.||++++++.+.++..++....+.+.+|+++++|.||+++|.+|+.++ +++++++++ |+|.||+++||++||||
T Consensus 193 ~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~l--a~~~gl~~~--ggI~Vd~~~~Ts~p~Iy 268 (785)
T TIGR02374 193 EQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDEL--AVSAGIKVN--RGIIVNDSMQTSDPDIY 268 (785)
T ss_pred HHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHH--HHhcCCccC--CCEEECCCcccCCCCEE
Confidence 99999999999999997665556788899999999999999999999986 567788776 57999999999999999
Q ss_pred EecccCCC----CCChHHHHHHHHHHHHHHhCCC-CCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecC
Q 042564 333 AVGDVTNR----MNLTPVALMEGTCFAKTVFGGQ-PCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFN 407 (498)
Q Consensus 333 a~GD~~~~----~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~ 407 (498)
|+|||+.. ..++..|.+||+++|.||+|.. .............+.+.+++++|...... ...... +
T Consensus 269 A~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~------~~~~~~--~- 339 (785)
T TIGR02374 269 AVGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETE------RTTSIK--I- 339 (785)
T ss_pred EeeecceeCCcccccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCC------CcEEEE--E-
Confidence 99999964 3467789999999999999865 22222222222345578899999765321 111111 1
Q ss_pred CCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhc
Q 042564 408 PMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDS 465 (498)
Q Consensus 408 ~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~ 465 (498)
.......|.|++++ +++|+|++++|+.. + ...+..++.++..+.+...
T Consensus 340 ------~d~~~~~y~kl~~~--~~rLlGavlvgd~~-~-~~~L~~li~~~~~l~~~~~ 387 (785)
T TIGR02374 340 ------YDEQKGIYKKLVLS--DDKLLGAVLFGDTS-D-YGRLLDMVLKQADISEDPA 387 (785)
T ss_pred ------EcCCCCEEEEEEEE--CCEEEEEEEECCHH-H-HHHHHHHHHcCCCCCcChh
Confidence 12234468999996 56899999999753 2 3556666777766654433
No 42
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=307.84 Aligned_cols=282 Identities=23% Similarity=0.337 Sum_probs=216.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+++|||||||+||+.+|..|.+.+.+|+|||+...+ .+..++|. + .
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~-------------~~~~~l~~------------------~---~ 55 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM-------------LFTPLLPQ------------------T---T 55 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc-------------chhhhHHH------------------h---c
Confidence 468999999999999999998778999999941111 01111110 0 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEe----------CCCceEEEEcCeEEEc
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQ----------LDGTKLSYSAKHILIA 172 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~----------~~g~~~~~~~d~liiA 172 (498)
....++.. +...+...+...+++++.+++..+|.....|.+ .+| .+++||+||||
T Consensus 56 --~g~~~~~~-----------~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g--~~i~yD~LViA 120 (424)
T PTZ00318 56 --TGTLEFRS-----------ICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNT--FSVPYDKLVVA 120 (424)
T ss_pred --ccCCChHH-----------hHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCc--eEecCCEEEEC
Confidence 00111111 111233445557899999999999876655554 233 37999999999
Q ss_pred CCCCCCCCCCCCCCc----ccChHHHhccc--------------------cCCCeEEEEcCCHHHHHHHHHHHH------
Q 042564 173 TGSRAQRAPIPGQEL----AITSDEALSLE--------------------ELPKRAVVLGGGYIAVEFASIWRG------ 222 (498)
Q Consensus 173 tG~~p~~p~i~g~~~----~~~~~~~~~l~--------------------~~~~~v~ViG~G~~g~e~a~~l~~------ 222 (498)
||+.|..|.+||.+. ..+.++...+. ...++++|||+|++|+|+|..|.+
T Consensus 121 tGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~ 200 (424)
T PTZ00318 121 HGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDV 200 (424)
T ss_pred CCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999742 22333322110 012489999999999999999875
Q ss_pred --------CCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEec
Q 042564 223 --------MGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFAT 294 (498)
Q Consensus 223 --------~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~ 294 (498)
.+.+|+++++.+.+++.+++++.+.+++.|++.||++++++.|.++..+ .+++++|+++++|.+|+++
T Consensus 201 ~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~ 276 (424)
T PTZ00318 201 RNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWST 276 (424)
T ss_pred HhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEcc
Confidence 3789999999999999999999999999999999999999999998543 3668889999999999999
Q ss_pred CCCcCCCCCCcccCCceeCCCCCeEcCCCCC-CCCCCeEEecccCCC-----CCChHHHHHHHHHHHHHHhC
Q 042564 295 GRAPNTKRLNLKAVGVEVDQTGAVKVDENSR-TNVPSIWAVGDVTNR-----MNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 295 G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~-t~~~~iya~GD~~~~-----~~~~~~A~~~g~~aa~~i~~ 360 (498)
|.+|+. + +++++++++++|+|.||+++| |++|||||+|||+.. ++.+..|.+||+++|+||..
T Consensus 277 G~~~~~-~--~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 277 GVGPGP-L--TKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred CCCCcc-h--hhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 999985 3 567788888889999999999 599999999999973 56788999999999999864
No 43
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-36 Score=295.82 Aligned_cols=282 Identities=25% Similarity=0.304 Sum_probs=221.7
Q ss_pred CccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
+.+|||||||.+|+.+|..|.+. +.+|+|||+...|.-.+ +++.. .
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p-------------------lL~ev-----a-------- 50 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP-------------------LLYEV-----A-------- 50 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch-------------------hhhhh-----h--------
Confidence 46899999999999999999996 48999999532221111 11100 0
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
...++. ..+...+...++.. +++++.+++..||.+..+|.+.+++ .+.||+||+|+|+.+..
T Consensus 51 ----~g~l~~-----------~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~--~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 51 ----TGTLSE-----------SEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLG--EISYDYLVVALGSETNY 113 (405)
T ss_pred ----cCCCCh-----------hheeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCc--cccccEEEEecCCcCCc
Confidence 001111 11222334455544 4999999999999999999887743 89999999999999999
Q ss_pred CCCCCC-Cc---ccChHHHhccc-----------cCC-----CeEEEEcCCHHHHHHHHHHHHCC-------------Cc
Q 042564 180 APIPGQ-EL---AITSDEALSLE-----------ELP-----KRAVVLGGGYIAVEFASIWRGMG-------------ST 226 (498)
Q Consensus 180 p~i~g~-~~---~~~~~~~~~l~-----------~~~-----~~v~ViG~G~~g~e~a~~l~~~g-------------~~ 226 (498)
+.+||. ++ ..+.+++.+++ ..+ -+++|+|||++|+|+|..|.++- .+
T Consensus 114 fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~ 193 (405)
T COG1252 114 FGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELR 193 (405)
T ss_pred CCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccE
Confidence 999996 33 34445543311 111 27999999999999999887541 38
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe-EEEcCEEEEecCCCcCCCCCCc
Q 042564 227 VDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE-EIVADVVLFATGRAPNTKRLNL 305 (498)
Q Consensus 227 V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~~l~l 305 (498)
|+++++.+++||.+++++++..++.|++.||++++++.|++++.+. |++++|+ +|++|.+|||+|.+++...
T Consensus 194 V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~--- 266 (405)
T COG1252 194 VILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLL--- 266 (405)
T ss_pred EEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhh---
Confidence 9999999999999999999999999999999999999999996554 7777777 5999999999999999874
Q ss_pred cc-CCceeCCCCCeEcCCCCCC-CCCCeEEecccCCC------CCChHHHHHHHHHHHHHHhC
Q 042564 306 KA-VGVEVDQTGAVKVDENSRT-NVPSIWAVGDVTNR------MNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 306 ~~-~gi~~~~~g~i~vd~~~~t-~~~~iya~GD~~~~------~~~~~~A~~~g~~aa~~i~~ 360 (498)
++ .+.+.|+.|++.||+++++ ++|||||+|||+.. |+.+..|.+||+.+|+||..
T Consensus 267 ~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 267 KDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred hhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence 55 4788888999999999997 99999999999964 57788999999999999863
No 44
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.6e-35 Score=288.45 Aligned_cols=283 Identities=28% Similarity=0.347 Sum_probs=209.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
|||+|||||+||+++|..|++.|.+|+|+| +...||.|.....+ ..++.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie----------~~~~gg~~~~~~~~---------------~~~~~~~~--- 52 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIE----------GMEPGGQLTTTTEV---------------ENYPGFPE--- 52 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEe----------ccCCCcceeecccc---------------cccCCCCC---
Confidence 699999999999999999999999999999 44467776432111 01111110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
.+... .+...+...+++.+++++...+..+++. .+.+.+.++. .+.||+||+|||+.|..|+
T Consensus 53 ---~~~~~-----------~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~--~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 53 ---GISGP-----------ELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGK--EYTAKAVIIATGASARKLG 116 (300)
T ss_pred ---CCChH-----------HHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCC--EEEeCEEEECCCCCcccCC
Confidence 00001 1223344456667899888767766543 4667666654 8999999999999999998
Q ss_pred CCCCCccc-----ChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhC-
Q 042564 182 IPGQELAI-----TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGR- 255 (498)
Q Consensus 182 i~g~~~~~-----~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~- 255 (498)
+||.+... ...........+++++|+|+|.+|+|+|..+.+.+.+|+++.+.+.+. .. ..+.+.+++.
T Consensus 117 i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~--~~----~~~~~~l~~~~ 190 (300)
T TIGR01292 117 IPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR--AE----KILLDRLRKNP 190 (300)
T ss_pred CCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--cC----HHHHHHHHhCC
Confidence 98864211 110000111246799999999999999999999999999999987542 22 3345666676
Q ss_pred CCEEEcCccEEEEEEeCCeEEEEEC-----CCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCC
Q 042564 256 GINLHPRTTIKELIKSEEGVKVITD-----HGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPS 330 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~~~~~~v~~~-----~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~ 330 (498)
||++++++.+.++..++....+++. +++++++|.+++|+|++|+.++ ++.. +.++++|++.||++++|++||
T Consensus 191 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~--l~~~-~~~~~~g~i~v~~~~~t~~~~ 267 (300)
T TIGR01292 191 NIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGL-LELDEGGYIVTDEGMRTSVPG 267 (300)
T ss_pred CeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHH--HHHh-heecCCCcEEECCCCccCCCC
Confidence 9999999999999765533334332 2357999999999999999987 4444 677888999999999999999
Q ss_pred eEEecccCC-CCCChHHHHHHHHHHHHHHh
Q 042564 331 IWAVGDVTN-RMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 331 iya~GD~~~-~~~~~~~A~~~g~~aa~~i~ 359 (498)
|||+|||+. .++.+..|+.||+.||.+|.
T Consensus 268 vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 268 VFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred EEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 999999998 57788999999999999986
No 45
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.2e-34 Score=284.43 Aligned_cols=288 Identities=22% Similarity=0.282 Sum_probs=208.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
++.+||+||||||||++||..|++.|++++++| ....||.|....-+ +.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie----------~~~~gg~~~~~~~~--------------------~~~ 53 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLIT----------GMEKGGQLTTTTEV--------------------ENW 53 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEE----------eecCCCceecCceE--------------------CCC
Confidence 457899999999999999999999999999999 44567777533211 011
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
+. ....+++..+..+ +.......++++..+.+..++ .+.+.+..+++ .+.||+||+|||+.|+
T Consensus 54 ~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~---~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 54 PG-DPNDLTGPLLMER-----------MHEHATKFETEIIFDHINKVDLQNRPFRLTGDSG---EYTCDALIIATGASAR 118 (321)
T ss_pred CC-CCCCCCHHHHHHH-----------HHHHHHHCCCEEEeeEEEEEEecCCeEEEEecCC---EEEECEEEECCCCCCC
Confidence 10 0122344333322 233334455666666554443 34556654332 6899999999999999
Q ss_pred CCCCCCCCcc-----cChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 042564 179 RAPIPGQELA-----ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLE 253 (498)
Q Consensus 179 ~p~i~g~~~~-----~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~ 253 (498)
.|++||.+.. ............+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+. .++.+.+.+.+.++
T Consensus 119 ~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~ 196 (321)
T PRK10262 119 YLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVE 196 (321)
T ss_pred CCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhcc
Confidence 9999985421 1111111122357899999999999999999999999999999987642 45677888889999
Q ss_pred hCCCEEEcCccEEEEEEeCCe-EEEEECC------CeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCC----
Q 042564 254 GRGINLHPRTTIKELIKSEEG-VKVITDH------GEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDE---- 322 (498)
Q Consensus 254 ~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~------g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~---- 322 (498)
+.||++++++.+.++..++.+ ..+++.+ .+++++|.|++++|++||..++ + .++.++ +|+|.||+
T Consensus 197 ~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~--~-~~l~~~-~g~i~vd~~~~~ 272 (321)
T PRK10262 197 NGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHG 272 (321)
T ss_pred CCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHh--h-cccccc-CCEEEECCCCcc
Confidence 999999999999999765433 2344432 2369999999999999999864 2 245554 58899997
Q ss_pred -CCCCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 323 -NSRTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 323 -~~~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
+++|++|+|||+|||++. ......|+.+|..||..|.
T Consensus 273 ~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 273 NATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 311 (321)
T ss_pred cccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHH
Confidence 789999999999999965 4566679999999998764
No 46
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=2.1e-34 Score=300.97 Aligned_cols=285 Identities=24% Similarity=0.284 Sum_probs=205.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
|...|||+||||||||++||..|++.|++|+|+| +..+||+|....+++. ++
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE----------~~~~GG~~~~~~~i~~---------------~p--- 52 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIE----------KDDFGGQITITSEVVN---------------YP--- 52 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEe----------cCCCCceEEecccccc---------------CC---
Confidence 3456999999999999999999999999999999 5568999865444320 00
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+........+ ...+...+.+.+++++.+.+..++.. .+.+...++ .+.+++||||||++|
T Consensus 53 ----g~~~~~~~~l-----------~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g---~~~a~~lVlATGa~p 114 (555)
T TIGR03143 53 ----GILNTTGPEL-----------MQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG---DYKTLAVLIATGASP 114 (555)
T ss_pred ----CCcCCCHHHH-----------HHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCC---EEEEeEEEECCCCcc
Confidence 0001111111 22233445567899887777666543 355665544 578999999999999
Q ss_pred CCCCCCCCCcccChHHH------hccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHH
Q 042564 178 QRAPIPGQELAITSDEA------LSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARN 251 (498)
Q Consensus 178 ~~p~i~g~~~~~~~~~~------~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~ 251 (498)
+.|++||.+.. +.... ......+++++|||+|++|+|+|..|.++|.+|+++++.+.+. .+..+. .+.
T Consensus 115 ~~~~ipG~~~~-~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~--~~~~~~---~~~ 188 (555)
T TIGR03143 115 RKLGFPGEEEF-TGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT--CAKLIA---EKV 188 (555)
T ss_pred CCCCCCCHHHh-CCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc--cCHHHH---HHH
Confidence 99999986421 11110 0111246899999999999999999999999999999987642 233332 233
Q ss_pred HHhCCCEEEcCccEEEEEEeCCeEEEE---ECCCeE--E--EcCE----EEEecCCCcCCCCCCcccCCceeCCCCCeEc
Q 042564 252 LEGRGINLHPRTTIKELIKSEEGVKVI---TDHGEE--I--VADV----VLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320 (498)
Q Consensus 252 l~~~Gv~i~~~~~v~~i~~~~~~~~v~---~~~g~~--i--~~D~----vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~v 320 (498)
++..||++++++.|.++..++....+. ..+|+. + ++|. |++++|++|++.++ + .+++++++|+|.|
T Consensus 189 ~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~--~-~~l~l~~~G~I~v 265 (555)
T TIGR03143 189 KNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELF--K-GVVELDKRGYIPT 265 (555)
T ss_pred HhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHH--h-hhcccCCCCeEEe
Confidence 445699999999999997544322222 235653 2 3676 99999999999973 3 3578888899999
Q ss_pred CCCCCCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 321 DENSRTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 321 d~~~~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
|++++|++|+|||+|||+.. +..+..|..||++||.+|.
T Consensus 266 d~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 266 NEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred CCccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 99999999999999999853 4556789999999999973
No 47
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=4.2e-35 Score=304.04 Aligned_cols=284 Identities=25% Similarity=0.340 Sum_probs=209.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..|||+||||||||++||..|++.|++|+|++ . .+||+|.+.-.++ .+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~----------~-~~GG~~~~~~~~~------------------~~--- 258 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA----------E-RIGGQVKDTVGIE------------------NL--- 258 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe----------c-CCCCccccCcCcc------------------cc---
Confidence 46999999999999999999999999999998 2 4788875321111 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
...+...+.++ ...+...+++.+++++.++ +..++ .+.+.+...+|. .+.||++|+|||+.|+
T Consensus 259 -~~~~~~~~~~l-----------~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~--~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 259 -ISVPYTTGSQL-----------AANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGE--VLKAKSVIVATGARWR 324 (515)
T ss_pred -cccCCCCHHHH-----------HHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCC--EEEeCEEEECCCCCcC
Confidence 00111223222 2233344556789988764 55453 345777776665 7999999999999999
Q ss_pred CCCCCCCCccc-----ChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 042564 179 RAPIPGQELAI-----TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLE 253 (498)
Q Consensus 179 ~p~i~g~~~~~-----~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~ 253 (498)
.|++||.+... ...........+++++|||+|++|+|+|..|++.+.+|+++++.+.+.. .+.+.+.++
T Consensus 325 ~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~ 398 (515)
T TIGR03140 325 KLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLK 398 (515)
T ss_pred CCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHh
Confidence 99999853211 0000001112468999999999999999999999999999998776532 234566676
Q ss_pred h-CCCEEEcCccEEEEEEeCCeE-EEEECC---C--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCC
Q 042564 254 G-RGINLHPRTTIKELIKSEEGV-KVITDH---G--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRT 326 (498)
Q Consensus 254 ~-~Gv~i~~~~~v~~i~~~~~~~-~v~~~~---g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t 326 (498)
+ .||++++++.+.++..+++.+ .+.+.+ + +++++|.|++++|++|+++++ +.. ++++++|+|.||+++||
T Consensus 399 ~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l--~~~-~~~~~~G~I~vd~~~~T 475 (515)
T TIGR03140 399 SLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDERGRT 475 (515)
T ss_pred cCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHH--hhh-cccCCCCeEEECCCCCC
Confidence 6 599999999999997764443 355432 2 469999999999999999974 444 77888899999999999
Q ss_pred CCCCeEEecccCCC-CCChHHHHHHHHHHHHHHhC
Q 042564 327 NVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 327 ~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~~ 360 (498)
++|+|||+|||+.. ...+..|+.+|..||.++..
T Consensus 476 s~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 476 SVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred CCCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence 99999999999985 35677899999999998864
No 48
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=7.2e-35 Score=292.67 Aligned_cols=372 Identities=23% Similarity=0.302 Sum_probs=273.2
Q ss_pred ccEEEECCChhHHHHHHHHHh---CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 24 FDLFVIGAGSGGVRAARFSAN---FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
..++|||.|.+|..+..++.+ .-++|+++-. .+.... + . .
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~------Ep~~nY------~-----------------R--------i 46 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGE------EPRPNY------N-----------------R--------I 46 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEecc------CCCccc------c-----------------c--------e
Confidence 579999999999999999988 3468888872 111110 0 0 0
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
.+ +..++. +..++++...-.+++++++|+++.+. +.++|+....|.++.|. .+.||+||+||||.|++
T Consensus 47 ~L--------s~vl~~-~~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g~--~~~YDkLilATGS~pfi 115 (793)
T COG1251 47 LL--------SSVLAG-EKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGR--TVSYDKLIIATGSYPFI 115 (793)
T ss_pred ee--------ccccCC-CccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCCc--EeecceeEEecCccccc
Confidence 00 000000 00111222222345677899999987 77999999999988876 89999999999999999
Q ss_pred CCCCCCCc-----ccChHHHhccc---cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHH
Q 042564 180 APIPGQEL-----AITSDEALSLE---ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVAR 250 (498)
Q Consensus 180 p~i~g~~~-----~~~~~~~~~l~---~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~ 250 (498)
|++||.+. ..+.+|...+. .-.++.+|||+|..|+|+|..|.+.|.++++++..+.++.. +|+.....|+.
T Consensus 116 ~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~ 195 (793)
T COG1251 116 LPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRR 195 (793)
T ss_pred cCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHH
Confidence 99999863 34555554422 23456899999999999999999999999999999887765 89999999999
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPS 330 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~ 330 (498)
.+++.|++++++....++..++....+.++||+.+++|.|++|+|.+||..+ ..++|+.+++ +|.||++|||++|+
T Consensus 196 ~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~el--a~~aGlavnr--GIvvnd~mqTsdpd 271 (793)
T COG1251 196 KLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDEL--AKEAGLAVNR--GIVVNDYMQTSDPD 271 (793)
T ss_pred HHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHh--HHhcCcCcCC--CeeecccccccCCC
Confidence 9999999999999999998766568899999999999999999999999998 6889999987 69999999999999
Q ss_pred eEEecccCCC----CCChHHHHHHHHHHHHHHhCCCCCC-CCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEe
Q 042564 331 IWAVGDVTNR----MNLTPVALMEGTCFAKTVFGGQPCK-PDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSS 405 (498)
Q Consensus 331 iya~GD~~~~----~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~ 405 (498)
|||+|+|+.. +.+...+..|++++|+|+.+..... ......+.-..+...+.+.|--. +. .+- ...++.
T Consensus 272 IYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~-e~--~~~-~~iv~~-- 345 (793)
T COG1251 272 IYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQ-ET--EGA-ESIVFR-- 345 (793)
T ss_pred eeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeeccchh-hc--CCC-ceEEEe--
Confidence 9999999964 7788899999999999999875432 11111111122333444444332 11 111 111111
Q ss_pred cCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcC
Q 042564 406 FNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDST 466 (498)
Q Consensus 406 ~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~ 466 (498)
+.....|-|+++ ++++|+|+.++|+.+. =..|-.+|..+..+.++.+.
T Consensus 346 ---------D~~~~iYKrlvL--~dd~IvgavL~GDt~d--~~~l~~li~~~~~~se~r~~ 393 (793)
T COG1251 346 ---------DEQRGIYKKLVL--KDDKIVGAVLYGDTSD--GGWLLDLILKGADISEIRDT 393 (793)
T ss_pred ---------cccccceeEEEE--eCCeEEEEEEEeeccc--chHHHHHHhcCCCccccchh
Confidence 222334667777 5679999999999532 13455668888888777653
No 49
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=3.6e-34 Score=286.20 Aligned_cols=278 Identities=24% Similarity=0.329 Sum_probs=211.6
Q ss_pred cEEEECCChhHHHHHHHHHh---CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 25 DLFVIGAGSGGVRAARFSAN---FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
+|||||||+||+.+|.+|++ .+.+|+|||++..+ .+..++|.- .
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~-------------~~~~~~~~~----~---------------- 47 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT-------------PYSGMLPGM----I---------------- 47 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC-------------cccchhhHH----H----------------
Confidence 48999999999999999964 46899999942111 111112200 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
. ...+.. ++...+.+.+++.+++++.+++..+|+....|.+.+|+ +++||+||||||+.|..|+
T Consensus 48 -~--g~~~~~-----------~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~--~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 48 -A--GHYSLD-----------EIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRP--PLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred -h--eeCCHH-----------HhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCC--cccccEEEEccCCCCCCCC
Confidence 0 000111 11122334556679999999999999887788887775 7999999999999999999
Q ss_pred CCCCC-cc---cChHHHhc--------c--ccCCCeEEEEcCCHHHHHHHHHHHH----CC--CcEEEEeeCCCCCCCCC
Q 042564 182 IPGQE-LA---ITSDEALS--------L--EELPKRAVVLGGGYIAVEFASIWRG----MG--STVDLLFRKELPLRGFD 241 (498)
Q Consensus 182 i~g~~-~~---~~~~~~~~--------l--~~~~~~v~ViG~G~~g~e~a~~l~~----~g--~~V~lv~~~~~~l~~~~ 241 (498)
+||.. .. .+.+++.. . ....++++|+|+|++|+|+|..|.+ .| .+|+++ ..+.+++.++
T Consensus 112 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~ 190 (364)
T TIGR03169 112 VEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFP 190 (364)
T ss_pred CCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCC
Confidence 99852 22 22222221 1 1235799999999999999999875 34 589999 5677777788
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD 321 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd 321 (498)
+++.+.+.+.+++.||++++++.+.++.. + .+.+.+|+++++|.+|+|+|.+|+.. +...++.++++|+|.||
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~---l~~~gl~~~~~g~i~vd 263 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVD 263 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCChhhH---HHHcCCCcCCCCeEEEC
Confidence 99999999999999999999999998853 2 46777888999999999999999864 45567888888999999
Q ss_pred CCCCC-CCCCeEEecccCCC-----CCChHHHHHHHHHHHHHHh
Q 042564 322 ENSRT-NVPSIWAVGDVTNR-----MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 322 ~~~~t-~~~~iya~GD~~~~-----~~~~~~A~~~g~~aa~~i~ 359 (498)
+++|| ++|||||+|||+.. ++.+..|.+||+++|+||.
T Consensus 264 ~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 307 (364)
T TIGR03169 264 PTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLR 307 (364)
T ss_pred CccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHH
Confidence 99998 99999999999963 3456789999999999985
No 50
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=4.3e-34 Score=291.50 Aligned_cols=275 Identities=27% Similarity=0.341 Sum_probs=201.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+||||||||+++|..|++.|++|+|+|+ ...+||.+.+ + +|.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~---------~~~~GG~l~~-g-ip~---------------------- 178 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEA---------LHKPGGVVTY-G-IPE---------------------- 178 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEec---------CCCCCcEeee-c-CCC----------------------
Confidence 357999999999999999999999999999994 3346666421 1 110
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC-CCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS-RAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~-~p~~p 180 (498)
..++ .++.. .....+.+.|++++.++.. . ..+...+. ...||+||||||+ .|+.|
T Consensus 179 ----~~~~-~~~~~-----------~~~~~l~~~gv~~~~~~~v---~--~~v~~~~~---~~~yd~viiAtGa~~p~~~ 234 (449)
T TIGR01316 179 ----FRLP-KEIVV-----------TEIKTLKKLGVTFRMNFLV---G--KTATLEEL---FSQYDAVFIGTGAGLPKLM 234 (449)
T ss_pred ----ccCC-HHHHH-----------HHHHHHHhCCcEEEeCCcc---C--CcCCHHHH---HhhCCEEEEeCCCCCCCcC
Confidence 0011 11111 1122345679999887532 1 12222222 3469999999998 69999
Q ss_pred CCCCCCc--ccChHHHhcc---------------ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHH
Q 042564 181 PIPGQEL--AITSDEALSL---------------EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDE 243 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~l---------------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~ 243 (498)
++||.+. +++..+++.. ...+++|+|||+|++|+|+|..+.++|.+|+++++.+.......
T Consensus 235 ~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~-- 312 (449)
T TIGR01316 235 NIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR-- 312 (449)
T ss_pred CCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC--
Confidence 9998753 4554444321 12458999999999999999999999999999998764211111
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEEEC---------CC-----------eEEEcCEEEEecCCCcCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVITD---------HG-----------EEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~~---------~g-----------~~i~~D~vi~a~G~~p~~~ 301 (498)
....+.+++.||++++++.+.++..++++ + .|++. +| .++++|.||+|+|+.|+..
T Consensus 313 --~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~ 390 (449)
T TIGR01316 313 --VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI 390 (449)
T ss_pred --HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch
Confidence 22335577889999999999999764332 2 33332 22 2699999999999999987
Q ss_pred CCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 302 RLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 302 ~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
+ ++..+++++++|+|.||++++|++|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 391 ~--l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 391 M--AETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred h--hhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 6 5677899998899999999999999999999999888889999999999999985
No 51
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=269.95 Aligned_cols=364 Identities=22% Similarity=0.311 Sum_probs=260.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCC--cEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGA--KVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
...++|||+|++|..|+..+++.|. +++++-++...+-+. ..
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr--~~---------------------------------- 117 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDR--AR---------------------------------- 117 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccc--hh----------------------------------
Confidence 3579999999999999999999765 777776322221110 00
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+..........+.....+++++.+++++.++ ++.+|-...++.+.+|+ .+.|++|+||||+.|+.
T Consensus 118 ------------Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge--~~kys~LilATGs~~~~ 183 (478)
T KOG1336|consen 118 ------------LSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNGE--TLKYSKLIIATGSSAKT 183 (478)
T ss_pred ------------cccceeeccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCCc--eeecceEEEeecCcccc
Confidence 0000001111122222345677899999987 77889888999888876 99999999999999999
Q ss_pred CCCCCCCc-----ccChHHHhc---cccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-CCHHHHHHHHH
Q 042564 180 APIPGQEL-----AITSDEALS---LEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-FDDEMRAVVAR 250 (498)
Q Consensus 180 p~i~g~~~-----~~~~~~~~~---l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~ 250 (498)
|++||.+. +...++... .......|+++|+|++|+|++..+...+.+||++++.+.++++ +.+.+.+.+++
T Consensus 184 l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~ 263 (478)
T KOG1336|consen 184 LDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYED 263 (478)
T ss_pred CCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHH
Confidence 99999752 223333322 2233678999999999999999999999999999999999986 89999999999
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNV 328 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~ 328 (498)
.++++||++++++.+.++....++ ..|.+.+|+++++|+|++.+|.+||+.++ +. ++.++++|+|.||+.+||++
T Consensus 264 y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~--~~-g~~~~~~G~i~V~~~f~t~~ 340 (478)
T KOG1336|consen 264 YYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFL--EK-GILLDSKGGIKVDEFFQTSV 340 (478)
T ss_pred HHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccc--cc-cceecccCCEeehhceeecc
Confidence 999999999999999999877644 77889999999999999999999999984 44 88899999999999999999
Q ss_pred CCeEEecccCCCC----------CChHHHHHHHHHHHHHHhCCCCCCCCCCCCcEE--EeccCCeeEeeCCHHHHHHcCC
Q 042564 329 PSIWAVGDVTNRM----------NLTPVALMEGTCFAKTVFGGQPCKPDYRDVPCA--VFCIPPLSVVGLSEEQAIEQGK 396 (498)
Q Consensus 329 ~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~~~~vG~~e~~a~~~~~ 396 (498)
|||||+||++..+ ..+..|..+|+-+...+....... +...|.+ .+....+-+.|.+ +
T Consensus 341 ~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~--~~~lPyf~t~~f~~~~~~~G~g--------~ 410 (478)
T KOG1336|consen 341 PNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDA--YDYLPYFYTRFFSLSWRFAGDG--------V 410 (478)
T ss_pred CCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCccc--ccccchHHHHHhhhhccccCcC--------c
Confidence 9999999999752 234467777875555554322222 3344432 1111111112211 1
Q ss_pred CCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHh
Q 042564 397 GDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFD 464 (498)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~ 464 (498)
.+..... ..+...|...++ + +..+|+..-+-. .+..+.++-.++++..+..+.
T Consensus 411 ~~~v~~G-----------~~e~~~f~ay~~--k-~~~v~a~~~~g~-~~~~~~~a~l~~~~~~v~~~~ 463 (478)
T KOG1336|consen 411 GDVVLFG-----------DLEPGSFGAYWI--K-GDKVGAVAEGGR-DEEVSQFAKLARQGPEVTSLK 463 (478)
T ss_pred cceeeec-----------ccccccceeeEe--e-ccEEEEEeccCC-ChHHHHHHHHHhcCCcchhhh
Confidence 1111110 122233666666 4 777787765543 478899999999998877643
No 52
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.3e-33 Score=293.26 Aligned_cols=284 Identities=25% Similarity=0.342 Sum_probs=210.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..|||+||||||||++||.+|++.|++|+|++ . .+||+|...--++ ++.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~----------~-~~GG~~~~~~~~~---------------~~~----- 258 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVA----------E-RFGGQVLDTMGIE---------------NFI----- 258 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe----------c-CCCCeeeccCccc---------------ccC-----
Confidence 46999999999999999999999999999998 3 3788874211111 000
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
..+...+.++ ...+...+++.++++..++ +..++. +.+.+.+.+|. .+.||.||+|||+.|+
T Consensus 259 --~~~~~~~~~l-----------~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~--~i~a~~vViAtG~~~r 323 (517)
T PRK15317 259 --SVPETEGPKL-----------AAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGA--VLKAKTVILATGARWR 323 (517)
T ss_pred --CCCCCCHHHH-----------HHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCC--EEEcCEEEECCCCCcC
Confidence 0112233332 2334455666789888764 656654 36777776665 7999999999999999
Q ss_pred CCCCCCCCcc-----cChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 042564 179 RAPIPGQELA-----ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLE 253 (498)
Q Consensus 179 ~p~i~g~~~~-----~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~ 253 (498)
.|++||.+.. ............+++|+|||+|++|+|+|..|+..+.+|+++++.+.+.. + +.+.+.+.
T Consensus 324 ~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~--~----~~l~~~l~ 397 (517)
T PRK15317 324 NMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA--D----QVLQDKLR 397 (517)
T ss_pred CCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc--c----HHHHHHHh
Confidence 9989886321 10101111112468999999999999999999999999999999876432 2 34455565
Q ss_pred h-CCCEEEcCccEEEEEEeCCeE-EEEEC---CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCC
Q 042564 254 G-RGINLHPRTTIKELIKSEEGV-KVITD---HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRT 326 (498)
Q Consensus 254 ~-~Gv~i~~~~~v~~i~~~~~~~-~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t 326 (498)
+ .||++++++.+.++..+++.+ .+.+. +| +++++|.+++++|++||++++ +.. +.++++|+|.||+++||
T Consensus 398 ~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l--~~~-v~~~~~g~i~vd~~l~T 474 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWL--KGT-VELNRRGEIIVDARGAT 474 (517)
T ss_pred cCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHH--hhh-eeeCCCCcEEECcCCCC
Confidence 5 599999999999998764442 34443 33 369999999999999999974 444 78888899999999999
Q ss_pred CCCCeEEecccCCC-CCChHHHHHHHHHHHHHHhC
Q 042564 327 NVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 327 ~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~~ 360 (498)
++|+|||+|||+.. .+....|+.+|..||.+++.
T Consensus 475 s~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 475 SVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFD 509 (517)
T ss_pred CCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHH
Confidence 99999999999985 46688999999999998763
No 53
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-33 Score=264.94 Aligned_cols=279 Identities=31% Similarity=0.442 Sum_probs=206.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCc-EEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAK-VGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~-V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
+.|||+|||||||||+||.++++.+++ ++|+| ....||.-.... .+.+++.+.-
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~----------~~~~gg~~~~~~---------------~venypg~~~ 56 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILE----------GGEPGGQLTKTT---------------DVENYPGFPG 56 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEe----------cCCcCCccccce---------------eecCCCCCcc
Confidence 469999999999999999999999998 77777 455554421110 1122222211
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
.....+++.. +.+.....++++....+..++.. .+.|.+.++ ++++++||||||..++
T Consensus 57 ------~~~g~~L~~~-----------~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~---~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 57 ------GILGPELMEQ-----------MKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKG---TYEAKAVIIATGAGAR 116 (305)
T ss_pred ------CCchHHHHHH-----------HHHHHhhcCeEEEEEEEEEEeecCceEEEEECCC---eEEEeEEEECcCCccc
Confidence 1222333333 23344557888888777776654 688888776 4999999999999999
Q ss_pred CCCCCCCC--------cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHH
Q 042564 179 RAPIPGQE--------LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVAR 250 (498)
Q Consensus 179 ~p~i~g~~--------~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~ 250 (498)
.|.+||.. ++.+++. ....++|+|||+|.+++|.|.+|...+.+|++++|.+.+-. . +.+.+
T Consensus 117 ~~~~~~e~e~~g~gv~yc~~cdg----~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra--~----~~~~~ 186 (305)
T COG0492 117 KLGVPGEEEFEGKGVSYCATCDG----FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA--E----EILVE 186 (305)
T ss_pred CCCCCcchhhcCCceEEeeecCc----cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc--C----HHHHH
Confidence 99887532 2333333 22457999999999999999999999999999999887432 3 33445
Q ss_pred HHHhC-CCEEEcCccEEEEEEeCCeEEEEECC--C--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCC
Q 042564 251 NLEGR-GINLHPRTTIKELIKSEEGVKVITDH--G--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSR 325 (498)
Q Consensus 251 ~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~ 325 (498)
.+++. +|.+++++.+.++..++ ...+++.+ + +.+.+|-+++++|..|++++ ++..+. ++++|+|.||+.++
T Consensus 187 ~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~ 262 (305)
T COG0492 187 RLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEME 262 (305)
T ss_pred HHHhcCCeEEEeCCceeEEecCc-cceEEEEecCCceEEEEeceEEEecCCCCchHH--Hhhccc-cCCCCcEEcCCCcc
Confidence 55555 89999999999998765 22344433 3 26889999999999999987 455556 78899999999999
Q ss_pred CCCCCeEEecccCCCCC-ChHHHHHHHHHHHHHHh
Q 042564 326 TNVPSIWAVGDVTNRMN-LTPVALMEGTCFAKTVF 359 (498)
Q Consensus 326 t~~~~iya~GD~~~~~~-~~~~A~~~g~~aa~~i~ 359 (498)
||+|+|||+||++..+. ++..|..+|-.||.++.
T Consensus 263 TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 263 TSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAE 297 (305)
T ss_pred cCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHH
Confidence 99999999999998743 67788889988888764
No 54
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.9e-33 Score=285.77 Aligned_cols=277 Identities=23% Similarity=0.320 Sum_probs=201.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..+||+||||||||++||..|++.|++|+|+|+ ...+||.|.+ .+|. | .
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~---------~~~~GG~l~~--gip~------------------~--~ 187 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEA---------LHEPGGVLVY--GIPE------------------F--R 187 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEec---------CCCCCCeeee--cCCC------------------c--c
Confidence 457999999999999999999999999999994 3456777632 1220 0 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC-CCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS-RAQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~-~p~~p 180 (498)
.. -..+. ......+++.|++++.++... .. +...+. ...+.||+||||||+ .|+.+
T Consensus 188 l~------~~~~~-----------~~~~~~~~~~gv~i~~~~~v~---~~--v~~~~~-~~~~~~d~viiAtGa~~~~~l 244 (464)
T PRK12831 188 LP------KETVV-----------KKEIENIKKLGVKIETNVVVG---KT--VTIDEL-LEEEGFDAVFIGSGAGLPKFM 244 (464)
T ss_pred CC------ccHHH-----------HHHHHHHHHcCCEEEcCCEEC---Cc--CCHHHH-HhccCCCEEEEeCCCCCCCCC
Confidence 00 00111 111234556799988876331 11 222221 124579999999998 69999
Q ss_pred CCCCCC--cccChHHHhcc--------------ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-CCCCCCHH
Q 042564 181 PIPGQE--LAITSDEALSL--------------EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-PLRGFDDE 243 (498)
Q Consensus 181 ~i~g~~--~~~~~~~~~~l--------------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-~l~~~~~~ 243 (498)
++||.+ .+++..+++.. ...+++|+|||+|++|+|+|..+.++|.+|+++++.+. .++....+
T Consensus 245 ~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e 324 (464)
T PRK12831 245 GIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEE 324 (464)
T ss_pred CCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHH
Confidence 999975 35665555421 13468999999999999999999999999999998653 23322222
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEEEC------------------CCe--EEEcCEEEEecCCCcCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVITD------------------HGE--EIVADVVLFATGRAPNTK 301 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~~------------------~g~--~i~~D~vi~a~G~~p~~~ 301 (498)
+ +.+++.||++++++.+.++..++++ + .+.+. +|+ .+++|.||+|+|+.|+..
T Consensus 325 ----~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 399 (464)
T PRK12831 325 ----V-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL 399 (464)
T ss_pred ----H-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChh
Confidence 1 3356789999999999998764432 2 22221 222 599999999999999997
Q ss_pred CCCccc-CCceeCCCCCeEcCCC-CCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 302 RLNLKA-VGVEVDQTGAVKVDEN-SRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 302 ~l~l~~-~gi~~~~~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
+ +.. .|++++++|+|.||++ ++||.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 400 ~--~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 400 I--SSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred h--hcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 6 344 6888988899999998 999999999999999988888999999999999984
No 55
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=1.3e-31 Score=286.56 Aligned_cols=275 Identities=24% Similarity=0.330 Sum_probs=199.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+||||||||++||..|++.|++|+|+|+ ...+||.+.+ .+|. +.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek---------~~~~GG~lr~--~IP~------------------~R-- 586 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFER---------EENAGGVVKN--IIPQ------------------FR-- 586 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEec---------ccccCcceee--eccc------------------cc--
Confidence 357999999999999999999999999999994 3456777643 2331 10
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~p 180 (498)
+. .+.+. ...+.+.+.|+++..++.. .+...+. ....||+||||||+++ ..+
T Consensus 587 ------lp-~evL~-----------~die~l~~~GVe~~~gt~V-------di~le~L--~~~gYDaVILATGA~~~~~l 639 (1019)
T PRK09853 587 ------IP-AELIQ-----------HDIEFVKAHGVKFEFGCSP-------DLTVEQL--KNEGYDYVVVAIGADKNGGL 639 (1019)
T ss_pred ------cc-HHHHH-----------HHHHHHHHcCCEEEeCcee-------EEEhhhh--eeccCCEEEECcCCCCCCCC
Confidence 00 11111 1123445679999887533 1222222 2566999999999974 455
Q ss_pred CCCCCC-cccChHHHhc-------cccCCCeEEEEcCCHHHHHHHHHHHHC-C-CcEEEEeeCC-CCCCCCCHHHHHHHH
Q 042564 181 PIPGQE-LAITSDEALS-------LEELPKRAVVLGGGYIAVEFASIWRGM-G-STVDLLFRKE-LPLRGFDDEMRAVVA 249 (498)
Q Consensus 181 ~i~g~~-~~~~~~~~~~-------l~~~~~~v~ViG~G~~g~e~a~~l~~~-g-~~V~lv~~~~-~~l~~~~~~~~~~l~ 249 (498)
+++|.+ .+++..+++. ....+++|+|||+|++|+|+|..+.+. | .+|++++|.+ ..++..++++ .
T Consensus 640 ~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEl----e 715 (1019)
T PRK09853 640 KLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEY----E 715 (1019)
T ss_pred CCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHH----H
Confidence 777754 2444333322 123478999999999999999998887 4 3899999875 3455444433 3
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEE-----------------EEECCCeEEEcCEEEEecCCCcCCCCCCcccCCcee
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVK-----------------VITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEV 312 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~-----------------v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~ 312 (498)
+.+ +.||++++...+.++..++ .+. +...++.++++|.||+|+|..|+.++ ++..|+.+
T Consensus 716 ~Al-eeGVe~~~~~~p~~I~~dG-~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel--le~~GL~l 791 (1019)
T PRK09853 716 EAL-EDGVEFKELLNPESFDADG-TLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL--LKANGIPL 791 (1019)
T ss_pred HHH-HcCCEEEeCCceEEEEcCC-cEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH--HHhcCccc
Confidence 333 4699999998888885322 221 12233457999999999999999987 56788988
Q ss_pred CCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 313 DQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 313 ~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
+++|+|.||++++|+.|+|||+|||+.++.++..|+.+|+.||++|.+..
T Consensus 792 d~~G~I~VDetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 792 DKKGWPVVDANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred cCCCCEEeCCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 88899999999999999999999999888889999999999999998643
No 56
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=3.2e-31 Score=262.97 Aligned_cols=289 Identities=26% Similarity=0.362 Sum_probs=198.9
Q ss_pred cccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhh
Q 042564 17 EEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDAR 96 (498)
Q Consensus 17 ~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~ 96 (498)
+.++....+|+|||||++|+.+|..|++.|++|+++|+ ...+||.... + +|
T Consensus 12 ~~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~---------~~~~gg~~~~-~-~~------------------ 62 (352)
T PRK12770 12 EKPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDK---------LPEPGGLMLF-G-IP------------------ 62 (352)
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeC---------CCCCCceeee-c-Cc------------------
Confidence 33444456999999999999999999999999999994 2334443210 0 00
Q ss_pred cCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe-C------CEEEEEeCCCceEEEEcCeE
Q 042564 97 SYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG-P------NEVEVTQLDGTKLSYSAKHI 169 (498)
Q Consensus 97 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~-~------~~~~v~~~~g~~~~~~~d~l 169 (498)
........ +....+. +.+.+++++.++....+ . ..+.......+...++||+|
T Consensus 63 --------~~~~~~~~-----------~~~~~~~-l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 122 (352)
T PRK12770 63 --------EFRIPIER-----------VREGVKE-LEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAV 122 (352)
T ss_pred --------ccccCHHH-----------HHHHHHH-HHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEE
Confidence 00001000 1111122 33458888887644321 1 11111111111124789999
Q ss_pred EEcCCC-CCCCCCCCCCCc--ccChHHHhc-----------cccC----CCeEEEEcCCHHHHHHHHHHHHCCCc-EEEE
Q 042564 170 LIATGS-RAQRAPIPGQEL--AITSDEALS-----------LEEL----PKRAVVLGGGYIAVEFASIWRGMGST-VDLL 230 (498)
Q Consensus 170 iiAtG~-~p~~p~i~g~~~--~~~~~~~~~-----------l~~~----~~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv 230 (498)
|||||+ .|..|++||.+. +++..+... .... .++++|+|+|++|+|+|..|...|.+ |+++
T Consensus 123 viAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi 202 (352)
T PRK12770 123 LIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLA 202 (352)
T ss_pred EEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 999999 578888998653 344332211 1112 47999999999999999999999997 9999
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE--------------------CCCeEEEcCEE
Q 042564 231 FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT--------------------DHGEEIVADVV 290 (498)
Q Consensus 231 ~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~--------------------~~g~~i~~D~v 290 (498)
++.+...... .....+.|+++||++++++.+.++..++....+++ .+++.+++|.+
T Consensus 203 ~~~~~~~~~~----~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~v 278 (352)
T PRK12770 203 YRRTINEAPA----GKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTV 278 (352)
T ss_pred eecchhhCCC----CHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEE
Confidence 9865421111 13344568889999999999999875543223322 12347999999
Q ss_pred EEecCCCcCCCCCCccc-CCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhC
Q 042564 291 LFATGRAPNTKRLNLKA-VGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 291 i~a~G~~p~~~~l~l~~-~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 360 (498)
|+++|++|+..+ ..+ .|+.++++|+|.||++++|+.|+|||+|||+..+.....|+.||+.+|++|..
T Consensus 279 i~a~G~~p~~~l--~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 279 VFAIGEIPTPPF--AKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred EECcccCCCchh--hhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHH
Confidence 999999999876 333 78888888999999999999999999999998888899999999999999853
No 57
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=1.8e-31 Score=273.75 Aligned_cols=275 Identities=24% Similarity=0.360 Sum_probs=198.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+||||||||+++|..|++.|++|+|+|+ ...+||...+ + +|. +
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~---------~~~~gG~l~~-g-ip~------------------~--- 186 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEA---------RDKAGGLLRY-G-IPE------------------F--- 186 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEcc---------CCCCCcEeec-c-CCC------------------c---
Confidence 347999999999999999999999999999994 2345554211 1 110 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p 180 (498)
.. ..++ .......+.+.++++..++... . .+...+. .+.||+||+|||+. |..+
T Consensus 187 -----~~-~~~~-----------~~~~~~~l~~~gv~~~~~~~v~---~--~v~~~~~---~~~~d~vvlAtGa~~~~~~ 241 (457)
T PRK11749 187 -----RL-PKDI-----------VDREVERLLKLGVEIRTNTEVG---R--DITLDEL---RAGYDAVFIGTGAGLPRFL 241 (457)
T ss_pred -----cC-CHHH-----------HHHHHHHHHHcCCEEEeCCEEC---C--ccCHHHH---HhhCCEEEEccCCCCCCCC
Confidence 00 0111 1122234556789998876431 1 1222221 37899999999985 7777
Q ss_pred CCCCCCc--ccChHHHhcc-------c--cCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCC-CCCCCCHHHHHH
Q 042564 181 PIPGQEL--AITSDEALSL-------E--ELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKEL-PLRGFDDEMRAV 247 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~l-------~--~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~-~l~~~~~~~~~~ 247 (498)
++||.+. +++..+++.. . ..+++|+|||+|.+|+|+|..+.+.|. +|+++++.+. .++....
T Consensus 242 ~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~----- 316 (457)
T PRK11749 242 GIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE----- 316 (457)
T ss_pred CCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----
Confidence 8888653 4444333221 1 246899999999999999999999998 8999998654 2332222
Q ss_pred HHHHHHhCCCEEEcCccEEEEEEeCCe---EEEEE-----------------CCCeEEEcCEEEEecCCCcCCCCCCccc
Q 042564 248 VARNLEGRGINLHPRTTIKELIKSEEG---VKVIT-----------------DHGEEIVADVVLFATGRAPNTKRLNLKA 307 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~~~~~---~~v~~-----------------~~g~~i~~D~vi~a~G~~p~~~~l~l~~ 307 (498)
..+.+++.||++++++.+.++..++++ +.+.. .+++++++|.||+|+|++|+..++ ...
T Consensus 317 ~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~-~~~ 395 (457)
T PRK11749 317 EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLIL-STT 395 (457)
T ss_pred HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhh-ccc
Confidence 245677899999999999999766543 33221 123479999999999999997653 235
Q ss_pred CCceeCCCCCeEcCC-CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 308 VGVEVDQTGAVKVDE-NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 308 ~gi~~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
.++.++++|+|.||+ +++|++|+|||+|||+..+.++..|+.||+.||.+|.
T Consensus 396 ~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 396 PGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred cCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 678888889999998 8899999999999999877788999999999999985
No 58
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=7.9e-31 Score=283.76 Aligned_cols=274 Identities=25% Similarity=0.374 Sum_probs=199.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..+||+||||||||++||..|++.|++|+|+|+ ...+||...+ .+|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~---------~~~~GG~l~~--gip----------------------- 475 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEA---------LHEIGGVLKY--GIP----------------------- 475 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCeeee--cCC-----------------------
Confidence 457999999999999999999999999999994 2445665321 122
Q ss_pred cccccccCHH-HHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC-CCCC
Q 042564 102 VHEKIDFDWK-KLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS-RAQR 179 (498)
Q Consensus 102 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~-~p~~ 179 (498)
.+.+. .+.. ...+.+.+.|+++..++.. ... ++..+. ....||+||||||+ .|+.
T Consensus 476 -----~~rlp~~~~~-----------~~~~~l~~~gv~~~~~~~v---~~~--v~~~~l--~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 476 -----EFRLPKKIVD-----------VEIENLKKLGVKFETDVIV---GKT--ITIEEL--EEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -----CCCCCHHHHH-----------HHHHHHHHCCCEEECCCEE---CCc--CCHHHH--hhcCCCEEEEeCCCCCCCC
Confidence 11111 1111 1123345679999887532 111 222221 25679999999998 5998
Q ss_pred CCCCCCC--cccChHHHhcc--------------ccCCCeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCC-CCCCCC
Q 042564 180 APIPGQE--LAITSDEALSL--------------EELPKRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKEL-PLRGFD 241 (498)
Q Consensus 180 p~i~g~~--~~~~~~~~~~l--------------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~-~l~~~~ 241 (498)
+++||.+ .+++..+++.. ...+++|+|||+|++|+|+|..+.++|.+ |+++++.+. .++...
T Consensus 533 l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~ 612 (752)
T PRK12778 533 MNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARL 612 (752)
T ss_pred CCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH
Confidence 9999875 35555554321 12358999999999999999999999997 999998754 233222
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEEC---------CC-----------eEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITD---------HG-----------EEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~---------~g-----------~~i~~D~vi~a~G~~p~ 299 (498)
.++ +.+++.||++++++.+.++..++++ ..+.+. +| .++++|.||+|+|+.|+
T Consensus 613 ~e~-----~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~ 687 (752)
T PRK12778 613 EEV-----KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPN 687 (752)
T ss_pred HHH-----HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCC
Confidence 222 3467789999999999998765432 223221 12 25899999999999999
Q ss_pred CCCCCccc-CCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 300 TKRLNLKA-VGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 300 ~~~l~l~~-~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
..+ +.. .++.++++|+|.||++++|+.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 688 ~~l--~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~ 746 (752)
T PRK12778 688 PLV--PSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAID 746 (752)
T ss_pred ccc--cccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 875 333 4788998899999999999999999999999888888999999999999985
No 59
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.98 E-value=1.4e-30 Score=280.16 Aligned_cols=274 Identities=23% Similarity=0.356 Sum_probs=196.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..+||+||||||||++||+.|++.|++|+|+|+ ...+||.+.+. +|. +.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek---------~~~lGG~l~~~--IP~------------------~r-- 584 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEK---------KEKPGGVVKNI--IPE------------------FR-- 584 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEec---------ccccCceeeec--ccc------------------cC--
Confidence 357999999999999999999999999999995 34578876431 331 00
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~p 180 (498)
+. .+.+. .....+.+.||++..+.. . ...+ .+ .....||+||||||+.+ ..+
T Consensus 585 ------lp-~e~l~-----------~~ie~l~~~GVe~~~g~~----~-d~~v--e~--l~~~gYDaVIIATGA~~~~~l 637 (1012)
T TIGR03315 585 ------IS-AESIQ-----------KDIELVKFHGVEFKYGCS----P-DLTV--AE--LKNQGYKYVILAIGAWKHGPL 637 (1012)
T ss_pred ------CC-HHHHH-----------HHHHHHHhcCcEEEEecc----c-ceEh--hh--hhcccccEEEECCCCCCCCCC
Confidence 00 11111 111334557899888731 1 1222 12 12456999999999874 445
Q ss_pred CCCCCC-cccChHHHhc-------cccCCCeEEEEcCCHHHHHHHHHHHHC-CC-cEEEEeeCC-CCCCCCCHHHHHHHH
Q 042564 181 PIPGQE-LAITSDEALS-------LEELPKRAVVLGGGYIAVEFASIWRGM-GS-TVDLLFRKE-LPLRGFDDEMRAVVA 249 (498)
Q Consensus 181 ~i~g~~-~~~~~~~~~~-------l~~~~~~v~ViG~G~~g~e~a~~l~~~-g~-~V~lv~~~~-~~l~~~~~~~~~~l~ 249 (498)
.++|.. .+++..+++. ....+++|+|||+|++|+|+|..+.+. |. +|++++|.. ..++..++++ .
T Consensus 638 ~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl----~ 713 (1012)
T TIGR03315 638 RLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREEL----E 713 (1012)
T ss_pred CcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHH----H
Confidence 677643 3444433332 123578999999999999999998876 75 799999876 3344444443 3
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEEEE---------------ECCCe--EEEcCEEEEecCCCcCCCCCCcccCCcee
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVKVI---------------TDHGE--EIVADVVLFATGRAPNTKRLNLKAVGVEV 312 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~---------------~~~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~ 312 (498)
+.+ +.||++++...+.++. ++.+.+. ..+|+ ++++|.||+|+|..|+.++ ++..|+++
T Consensus 714 ~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~l--le~~GL~l 788 (1012)
T TIGR03315 714 EAL-EDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPL 788 (1012)
T ss_pred HHH-HcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHH--HHhcCccc
Confidence 332 4699999988888875 2222221 11233 6899999999999999987 56788999
Q ss_pred CCCCCeEcCCC-CCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 313 DQTGAVKVDEN-SRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 313 ~~~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
+++|+|.||++ ++|+.|+|||+|||+.++..+..|+.||+.||.+|++..
T Consensus 789 d~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 789 DEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 99999999986 899999999999999888889999999999999998643
No 60
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.98 E-value=1.2e-30 Score=267.98 Aligned_cols=280 Identities=24% Similarity=0.319 Sum_probs=194.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+||||||||+++|..|++.|++|+|+|+ ...+||...+ .+|. |
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~---------~~~~GG~l~~--gip~------------------~--- 189 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFER---------ADRIGGLLRY--GIPD------------------F--- 189 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEec---------CCCCCceeee--cCCc------------------c---
Confidence 347999999999999999999999999999994 3345554211 1220 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p 180 (498)
... .++. ......+.+.|++++.++....+ +.. + .....||+||+|||+. |..+
T Consensus 190 -----~~~-~~~~-----------~~~~~~~~~~gv~~~~~~~v~~~-----~~~-~--~~~~~~d~vvlAtGa~~~~~l 244 (471)
T PRK12810 190 -----KLE-KEVI-----------DRRIELMEAEGIEFRTNVEVGKD-----ITA-E--ELLAEYDAVFLGTGAYKPRDL 244 (471)
T ss_pred -----cCC-HHHH-----------HHHHHHHHhCCcEEEeCCEECCc-----CCH-H--HHHhhCCEEEEecCCCCCCcC
Confidence 000 1111 11123455679999887643221 111 1 1135799999999997 7778
Q ss_pred CCCCCCc--ccChHHHhc--------------cccCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCCCCCCC-CH
Q 042564 181 PIPGQEL--AITSDEALS--------------LEELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELPLRGF-DD 242 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~--------------l~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~l~~~-~~ 242 (498)
++||.+. +++..+++. ....+++|+|||+|++|+|+|..+.+.|. +|+.+++.+...... +.
T Consensus 245 ~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~ 324 (471)
T PRK12810 245 GIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKN 324 (471)
T ss_pred CCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccc
Confidence 8888642 333222111 12346899999999999999998888886 788666544322111 00
Q ss_pred ----HH-HHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEE-----ECCC---------eEEEcCEEEEecCCCcCCCC
Q 042564 243 ----EM-RAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVI-----TDHG---------EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 243 ----~~-~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~-----~~~g---------~~i~~D~vi~a~G~~p~~~~ 302 (498)
.. .....+.+++.||++++++.+.+|..+++.+ .|. ..+| +++++|.||+|+|.+|+...
T Consensus 325 ~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~ 404 (471)
T PRK12810 325 NPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAG 404 (471)
T ss_pred cCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchh
Confidence 00 1113455678899999999999997544442 232 2222 47999999999999998643
Q ss_pred CCcccCCceeCCCCCeEcC-CCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 303 LNLKAVGVEVDQTGAVKVD-ENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 303 l~l~~~gi~~~~~g~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
+ ++..+++++++|++.+| ++++|+.|+|||+|||+.++.++..|+.||+.||.+|.
T Consensus 405 l-~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~ 461 (471)
T PRK12810 405 L-LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAID 461 (471)
T ss_pred h-ccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHH
Confidence 3 57788889988999998 79999999999999999987788899999999999985
No 61
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.98 E-value=1.8e-30 Score=282.56 Aligned_cols=274 Identities=22% Similarity=0.310 Sum_probs=198.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
.++|+|||||||||+||..|++.|++|+|+|+ ...+||... ..+|.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~---------~~~~GG~l~--yGIP~----------------------- 351 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA---------FHDLGGVLR--YGIPE----------------------- 351 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEee---------CCCCCceEE--ccCCC-----------------------
Confidence 57999999999999999999999999999994 345677632 12331
Q ss_pred ccccccC-HHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC-CCCCC
Q 042564 103 HEKIDFD-WKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS-RAQRA 180 (498)
Q Consensus 103 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~-~p~~p 180 (498)
+. ..+++.+ ..+.+++.|+++..+.... ..++.++. ....||+|+||||+ .|+.+
T Consensus 352 -----~rlp~~vi~~-----------~i~~l~~~Gv~f~~n~~vG-----~dit~~~l--~~~~yDAV~LAtGA~~pr~l 408 (944)
T PRK12779 352 -----FRLPNQLIDD-----------VVEKIKLLGGRFVKNFVVG-----KTATLEDL--KAAGFWKIFVGTGAGLPTFM 408 (944)
T ss_pred -----CcChHHHHHH-----------HHHHHHhhcCeEEEeEEec-----cEEeHHHh--ccccCCEEEEeCCCCCCCcC
Confidence 11 1111111 1233455799998875332 22333332 24579999999998 48888
Q ss_pred CCCCCCc--ccChHHHhcc----------------ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC-CCCCCC
Q 042564 181 PIPGQEL--AITSDEALSL----------------EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL-PLRGFD 241 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~l----------------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~-~l~~~~ 241 (498)
++||.+. +++..+++.. ....++|+|||||.+|+++|..+.++|.+|+++++.+. .++...
T Consensus 409 ~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~ 488 (944)
T PRK12779 409 NVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARV 488 (944)
T ss_pred CCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccH
Confidence 9998643 5555554421 11358999999999999999999999999999998753 233222
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC--eE-EEEE---------C--------CC--eEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEE--GV-KVIT---------D--------HG--EEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~~-~v~~---------~--------~g--~~i~~D~vi~a~G~~p~ 299 (498)
..+.. ..+.||+++++..+.++..+++ .+ .+.+ . +| ..+++|.||+|+|+.|+
T Consensus 489 ----~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~ 563 (944)
T PRK12779 489 ----EELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTAN 563 (944)
T ss_pred ----HHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCC
Confidence 22333 3467999999999999976532 11 1111 1 12 35999999999999999
Q ss_pred CCCCCcccCCceeCCCCCeEcCC-CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 300 TKRLNLKAVGVEVDQTGAVKVDE-NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 300 ~~~l~l~~~gi~~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
.... ....+++++++|.|.||+ +++|+.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 564 ~~l~-~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~ 623 (944)
T PRK12779 564 PIMK-DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIV 623 (944)
T ss_pred hhhh-hcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHH
Confidence 7532 244578899899999997 5899999999999999988889999999999999984
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=1.2e-29 Score=269.21 Aligned_cols=273 Identities=24% Similarity=0.347 Sum_probs=196.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
.++|+||||||||+++|..|++.|++|+|+|+ ...+||...+ .+|. +
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~---------~~~~GG~l~~--gip~------------------~---- 239 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDA---------NEQAGGMMRY--GIPR------------------F---- 239 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEec---------CCCCCceeee--cCCC------------------C----
Confidence 47999999999999999999999999999994 3445665321 1110 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~p~ 181 (498)
. .+..+..+ ....+.+.|+++..++....+ +...+. ...||+|++|||+.+ ..++
T Consensus 240 ----~-~~~~~~~~-----------~~~~l~~~Gv~i~~~~~v~~d-----v~~~~~---~~~~DaVilAtGa~~~~~~~ 295 (652)
T PRK12814 240 ----R-LPESVIDA-----------DIAPLRAMGAEFRFNTVFGRD-----ITLEEL---QKEFDAVLLAVGAQKASKMG 295 (652)
T ss_pred ----C-CCHHHHHH-----------HHHHHHHcCCEEEeCCcccCc-----cCHHHH---HhhcCEEEEEcCCCCCCCCC
Confidence 0 01111111 112345578988876532211 111111 235999999999985 4677
Q ss_pred CCCCCc--ccChHHHhc------cccCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCC-CCCCCCHHHHHHHHHH
Q 042564 182 IPGQEL--AITSDEALS------LEELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKEL-PLRGFDDEMRAVVARN 251 (498)
Q Consensus 182 i~g~~~--~~~~~~~~~------l~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~-~l~~~~~~~~~~l~~~ 251 (498)
+||.+. +++..+++. ....+++|+|||+|++|+|+|..+.++|. +|+++++.+. .++..+.++ .+.
T Consensus 296 ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei----~~a 371 (652)
T PRK12814 296 IPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI----EEA 371 (652)
T ss_pred CCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH----HHH
Confidence 888653 444444432 12346899999999999999999999987 5999998764 355444433 222
Q ss_pred HHhCCCEEEcCccEEEEEEeCCeEEEE---EC---------------CCe--EEEcCEEEEecCCCcCCCCCCcccCCce
Q 042564 252 LEGRGINLHPRTTIKELIKSEEGVKVI---TD---------------HGE--EIVADVVLFATGRAPNTKRLNLKAVGVE 311 (498)
Q Consensus 252 l~~~Gv~i~~~~~v~~i~~~~~~~~v~---~~---------------~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~ 311 (498)
.+.||++++++.+.++..+++.+.++ +. +|+ .+++|.||+|+|..|+..+ ++..|+.
T Consensus 372 -~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~l--l~~~gl~ 448 (652)
T PRK12814 372 -LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI--AEAAGIG 448 (652)
T ss_pred -HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccc--ccccCcc
Confidence 35699999999999987655543222 11 122 5899999999999999987 5667888
Q ss_pred eCCCCCeEcCC-CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 312 VDQTGAVKVDE-NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 312 ~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
++.+|+|.||+ +++|+.|+|||+||++..+.++..|+.+|+.||.+|.
T Consensus 449 ~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 449 TSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred ccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 88889999997 6899999999999999888888999999999999873
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=3.6e-29 Score=274.81 Aligned_cols=276 Identities=21% Similarity=0.310 Sum_probs=194.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
.++|+|||||||||+||..|++.|++|+|+|+ ...+||...+ .+|. +
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~---------~~~~GG~l~~--gip~------------------~---- 476 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEA---------LHVVGGVLQY--GIPS------------------F---- 476 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEec---------CCCCcceeec--cCCc------------------c----
Confidence 57999999999999999999999999999994 3445654321 1220 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p~ 181 (498)
. ...+++. ...+.+.+.|+++..++... ..+.+. +- .....||+||||||+. |+.++
T Consensus 477 ----r-l~~e~~~-----------~~~~~l~~~Gv~~~~~~~vg---~~~~~~--~l-~~~~~yDaViIATGa~~pr~l~ 534 (1006)
T PRK12775 477 ----R-LPRDIID-----------REVQRLVDIGVKIETNKVIG---KTFTVP--QL-MNDKGFDAVFLGVGAGAPTFLG 534 (1006)
T ss_pred ----C-CCHHHHH-----------HHHHHHHHCCCEEEeCCccC---CccCHH--HH-hhccCCCEEEEecCCCCCCCCC
Confidence 0 0111111 12234556799998875321 112221 10 0024689999999984 89899
Q ss_pred CCCCC--cccChHHHhcc---------------ccCCCeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCCC-CCCCCH
Q 042564 182 IPGQE--LAITSDEALSL---------------EELPKRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKELP-LRGFDD 242 (498)
Q Consensus 182 i~g~~--~~~~~~~~~~l---------------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~~-l~~~~~ 242 (498)
+||.+ .+++..+++.. ...+++|+|||+|++|+++|..+.++|.+ |+++.+.... ++....
T Consensus 535 IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~ 614 (1006)
T PRK12775 535 IPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIE 614 (1006)
T ss_pred CCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHH
Confidence 99964 35555544321 12468999999999999999999999985 7888765431 221111
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEE---------C--------CC--eEEEcCEEEEecCCCcCCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVIT---------D--------HG--EEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~---------~--------~g--~~i~~D~vi~a~G~~p~~~ 301 (498)
-.+.+++.||++++++.+.++..++++ ..+.+ . +| .++++|.||+|+|+.|+..
T Consensus 615 -----e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 689 (1006)
T PRK12775 615 -----EIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPI 689 (1006)
T ss_pred -----HHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChh
Confidence 124567789999999999998754332 22222 1 12 2599999999999999987
Q ss_pred CCCcccCCceeCCCCCeEcCC-----CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 302 RLNLKAVGVEVDQTGAVKVDE-----NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 302 ~l~l~~~gi~~~~~g~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
++ ....++.++++|.|.+|+ +++||+|+|||+||++.++.++..|+.+|+.||.+|.
T Consensus 690 ~~-~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 690 IT-QSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred hh-hccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHH
Confidence 53 123478888889999996 7899999999999999988889999999999999973
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=1.1e-28 Score=252.56 Aligned_cols=275 Identities=24% Similarity=0.334 Sum_probs=193.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+||||||+|+++|..|++.|++|+++|+ ...+||...+ ++|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~---------~~~~gG~l~~--gip~~--------------------- 187 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDR---------HPEIGGLLTF--GIPSF--------------------- 187 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEec---------CCCCCceeee--cCccc---------------------
Confidence 347999999999999999999999999999994 3445665321 23310
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCC-CC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ-RA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~-~p 180 (498)
..+ .++ .......+.+.|++++.++... . . +...+ ....||.||+|||+.+. .+
T Consensus 188 -----~~~-~~~-----------~~~~~~~~~~~Gv~~~~~~~v~--~-~--~~~~~---~~~~~D~vilAtGa~~~~~~ 242 (467)
T TIGR01318 188 -----KLD-KAV-----------LSRRREIFTAMGIEFHLNCEVG--R-D--ISLDD---LLEDYDAVFLGVGTYRSMRG 242 (467)
T ss_pred -----cCC-HHH-----------HHHHHHHHHHCCCEEECCCEeC--C-c--cCHHH---HHhcCCEEEEEeCCCCCCcC
Confidence 000 111 1112244566799988765221 1 1 11111 13479999999999874 45
Q ss_pred CCCCCCc--ccChHHH--------hcc---------ccCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCC-CCCC
Q 042564 181 PIPGQEL--AITSDEA--------LSL---------EELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKEL-PLRG 239 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~--------~~l---------~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~-~l~~ 239 (498)
++||.+. +++..++ ..+ ....++++|+|+|.+|+++|..+.++|. +|+++++.+. .++.
T Consensus 243 ~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~ 322 (467)
T TIGR01318 243 GLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG 322 (467)
T ss_pred CCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC
Confidence 7888643 3322211 111 1235899999999999999999999996 7999998764 3444
Q ss_pred CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEEE---C------C-----------CeEEEcCEEEEecCCC
Q 042564 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVIT---D------H-----------GEEIVADVVLFATGRA 297 (498)
Q Consensus 240 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~---~------~-----------g~~i~~D~vi~a~G~~ 297 (498)
.+.++ +.+++.||++++++.+.++..++++ + .+++ . + ...+++|.||+|+|+.
T Consensus 323 ~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~ 397 (467)
T TIGR01318 323 SRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQ 397 (467)
T ss_pred CHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCC
Confidence 44332 3456789999999999999764332 2 2222 0 1 2368999999999999
Q ss_pred cCCCCCCcccCCceeCCCCCeEcC----CCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 298 PNTKRLNLKAVGVEVDQTGAVKVD----ENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 298 p~~~~l~l~~~gi~~~~~g~i~vd----~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
|+...+ ++..+++++++|+|.|| ++++|+.|+|||+|||+..+.++..|+.+|+.||.+|.
T Consensus 398 p~~~~~-~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 398 PHAMPW-LAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred CCcccc-ccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence 986432 56678888888999999 68899999999999999888888899999999999985
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=1.4e-28 Score=262.29 Aligned_cols=275 Identities=24% Similarity=0.353 Sum_probs=191.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+||||||||+++|..|++.|++|+|+|+ ...+||...+ .+|. +
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~---------~~~~GG~l~~--gip~------------------~--- 373 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDR---------HPEIGGLLTF--GIPA------------------F--- 373 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCceeee--cCCC------------------c---
Confidence 357999999999999999999999999999994 3455665321 2231 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~p 180 (498)
.+. ..++ ......+++.|+++..++....+ +...+ ....||.|++|||+.+ ..+
T Consensus 374 -----~l~-~~~~-----------~~~~~~~~~~Gv~~~~~~~v~~~-----i~~~~---~~~~~DavilAtGa~~~~~l 428 (654)
T PRK12769 374 -----KLD-KSLL-----------ARRREIFSAMGIEFELNCEVGKD-----ISLES---LLEDYDAVFVGVGTYRSMKA 428 (654)
T ss_pred -----cCC-HHHH-----------HHHHHHHHHCCeEEECCCEeCCc-----CCHHH---HHhcCCEEEEeCCCCCCCCC
Confidence 000 1111 11123445678888876522111 11111 1246999999999864 456
Q ss_pred CCCCCCc--ccChH--------HHhcc---------ccCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCCC-CCC
Q 042564 181 PIPGQEL--AITSD--------EALSL---------EELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELP-LRG 239 (498)
Q Consensus 181 ~i~g~~~--~~~~~--------~~~~l---------~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~-l~~ 239 (498)
.++|.+. +++.. ....+ ....++|+|||+|++|+++|..+.+.|. +|+++++.+.. ++.
T Consensus 429 ~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~ 508 (654)
T PRK12769 429 GLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG 508 (654)
T ss_pred CCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC
Confidence 6776542 22211 11111 1235799999999999999999889986 69999986543 443
Q ss_pred CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC-e-EEEEE---------CCC---------e--EEEcCEEEEecCCC
Q 042564 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEE-G-VKVIT---------DHG---------E--EIVADVVLFATGRA 297 (498)
Q Consensus 240 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~-~~v~~---------~~g---------~--~i~~D~vi~a~G~~ 297 (498)
.+.+ .+.+++.||++++++.+.++..+++ . ..|++ .+| + ++++|.||+|+|+.
T Consensus 509 ~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~ 583 (654)
T PRK12769 509 SKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFN 583 (654)
T ss_pred CHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCC
Confidence 3332 3457788999999999999875432 2 22322 112 2 59999999999999
Q ss_pred cCCCCCCcccCCceeCCCCCeEcCC----CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 298 PNTKRLNLKAVGVEVDQTGAVKVDE----NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 298 p~~~~l~l~~~gi~~~~~g~i~vd~----~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
|+...+ ++..+++++++|.|.||+ +++|++|+|||+||++.++.++..|+.+|+.||++|.
T Consensus 584 p~~~~~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~ 648 (654)
T PRK12769 584 PHGMPW-LESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGII 648 (654)
T ss_pred CCcccc-ccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHH
Confidence 996432 577889999999999986 4899999999999999988889999999999999985
No 66
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.96 E-value=1.9e-27 Score=244.39 Aligned_cols=278 Identities=25% Similarity=0.330 Sum_probs=188.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
.++|+|||||++|+++|..|++.|++|+|+|+ ...+||.+.+ .+|. +
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~---------~~~~gG~l~~--gip~------------------~---- 189 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFER---------EDRCGGLLMY--GIPN------------------M---- 189 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEec---------CCCCCceeec--cCCC------------------c----
Confidence 46999999999999999999999999999994 3345665421 1120 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p~ 181 (498)
.++ ..+. ....+.+++.|++++.++....+ +.. + .....||.|++|||+. |..++
T Consensus 190 ----~~~-~~~~-----------~~~~~~~~~~Gv~~~~~~~v~~~-----~~~-~--~~~~~~d~VilAtGa~~~~~l~ 245 (485)
T TIGR01317 190 ----KLD-KAIV-----------DRRIDLLSAEGIDFVTNTEIGVD-----ISA-D--ELKEQFDAVVLAGGATKPRDLP 245 (485)
T ss_pred ----cCC-HHHH-----------HHHHHHHHhCCCEEECCCEeCCc-----cCH-H--HHHhhCCEEEEccCCCCCCcCC
Confidence 001 0111 11123456679999887643211 111 1 1246799999999998 88888
Q ss_pred CCCCCc--ccChHHHh----------------ccccCCCeEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCCCCCCC-
Q 042564 182 IPGQEL--AITSDEAL----------------SLEELPKRAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELPLRGFD- 241 (498)
Q Consensus 182 i~g~~~--~~~~~~~~----------------~l~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~l~~~~- 241 (498)
+||.+. +++..+++ ......++|+|||+|++|+|+|..+.+.| .+|+++++.+..+....
T Consensus 246 i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~ 325 (485)
T TIGR01317 246 IPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAK 325 (485)
T ss_pred CCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhccc
Confidence 998652 33322211 01124689999999999999987777776 47999988765432211
Q ss_pred --------H--HHHHHHHHHHHhCCCEE-EcCccEEEEEEeC-Ce-EEEEE--------CCC-----------eEEEcCE
Q 042564 242 --------D--EMRAVVARNLEGRGINL-HPRTTIKELIKSE-EG-VKVIT--------DHG-----------EEIVADV 289 (498)
Q Consensus 242 --------~--~~~~~l~~~l~~~Gv~i-~~~~~v~~i~~~~-~~-~~v~~--------~~g-----------~~i~~D~ 289 (498)
. ++.....+..+..|+.+ ++++.+.+|..++ +. ..+.+ .+| .++++|.
T Consensus 326 ~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~ 405 (485)
T TIGR01317 326 DNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADL 405 (485)
T ss_pred ccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCE
Confidence 1 12222334344457654 4677788886643 22 22221 133 2699999
Q ss_pred EEEecCCC-cCCCCCCcccCCceeCCCCCeE-cCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 290 VLFATGRA-PNTKRLNLKAVGVEVDQTGAVK-VDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 290 vi~a~G~~-p~~~~l~l~~~gi~~~~~g~i~-vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
||+|+|.. |+..+ ++..+++++++|.+. +|++++|+.|+|||+|||+.++.+...|+.+|+.||.+|.
T Consensus 406 Vi~AiG~~~p~~~~--~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~ 475 (485)
T TIGR01317 406 VLLAMGFVGPEQIL--LDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVD 475 (485)
T ss_pred EEEccCcCCCcccc--ccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999996 88876 567788888888885 5678999999999999999888888899999999999974
No 67
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.96 E-value=9.3e-27 Score=237.19 Aligned_cols=323 Identities=27% Similarity=0.299 Sum_probs=237.6
Q ss_pred hCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCCCCCC---cccChHHHhccc---cCCCeEEE
Q 042564 134 NAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQE---LAITSDEALSLE---ELPKRAVV 206 (498)
Q Consensus 134 ~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i~g~~---~~~~~~~~~~l~---~~~~~v~V 206 (498)
+.++++..++ +..+|+....+.+.+| ++.||++++|||++|..++..... ...+..+...+. ...++++|
T Consensus 65 ~~~i~~~~~~~v~~id~~~~~v~~~~g---~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 141 (415)
T COG0446 65 ATGIDVRTGTEVTSIDPENKVVLLDDG---EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVV 141 (415)
T ss_pred hhCCEEeeCCEEEEecCCCCEEEECCC---cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEE
Confidence 4578887765 7788988888888776 789999999999999987611111 122333333222 12589999
Q ss_pred EcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCC-HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEE---EEECCC
Q 042564 207 LGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFD-DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK---VITDHG 282 (498)
Q Consensus 207 iG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~---v~~~~g 282 (498)
+|+|++|+|+|..+++.|.+|++++..+++++.+. +++.+.+.+.+++.||+++++..+.+|....+... +...++
T Consensus 142 vG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 221 (415)
T COG0446 142 VGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG 221 (415)
T ss_pred ECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC
Confidence 99999999999999999999999999999888766 88999999999999999999999999987665433 577788
Q ss_pred eEEEcCEEEEecCCCcCCCCCCcccCC-ceeCCCCCeEcCCCCCCC-CCCeEEecccCCC----------CCChHHHHHH
Q 042564 283 EEIVADVVLFATGRAPNTKRLNLKAVG-VEVDQTGAVKVDENSRTN-VPSIWAVGDVTNR----------MNLTPVALME 350 (498)
Q Consensus 283 ~~i~~D~vi~a~G~~p~~~~l~l~~~g-i~~~~~g~i~vd~~~~t~-~~~iya~GD~~~~----------~~~~~~A~~~ 350 (498)
..+++|.+++++|.+||..+ .++.+ .....+|+|.||+.++|+ .++|||+|||+.. ...+..|..+
T Consensus 222 ~~~~~d~~~~~~g~~p~~~l--~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~ 299 (415)
T COG0446 222 EEIKADLVIIGPGERPNVVL--ANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAA 299 (415)
T ss_pred cEEEeeEEEEeecccccHHH--HhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhh
Confidence 89999999999999999765 33433 145567889999999997 9999999998853 3356688999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCcccc-ccCCceeEEEEEEECC
Q 042564 351 GTCFAKTVFGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTI-SGRQEKTVMKLVVDAE 429 (498)
Q Consensus 351 g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~kl~~~~~ 429 (498)
+++++.++.+. ..........+..........+|+++. ..... + .............. .........|++++.+
T Consensus 300 ~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (415)
T COG0446 300 GRIAAENIAGA-LRIPGLLGTVISDVGDLCAASTGLTEG--KERGI-D-VVLVVSGGKDPRAHLYPGAELVGIKLVGDAD 374 (415)
T ss_pred hHHHHHHhccc-cccccccCceEEEEcCeEEEEecCCcc--cccce-e-eeEEEeccCcccccccCCCCeEEEEEEEcCc
Confidence 99999999875 222122222223334567788899987 22211 1 11111111111111 1222334788899989
Q ss_pred CCeEEEEEEECCChhHHHHHHHHHHHCCCCHHHHhcCcC
Q 042564 430 TEKVLGASMCGPEAPEIMQGIAVALKCGATKAQFDSTVG 468 (498)
Q Consensus 430 ~~~i~G~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~ 468 (498)
+++++|++. -. ....+..+..++..+.++.++.....
T Consensus 375 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (415)
T COG0446 375 TGRILGGQE-LE-VLKRIGALALAIGLGDTVAELDALDA 411 (415)
T ss_pred ccceehhhh-HH-HHhhhhhhhhhhhhcCchhhhhhccc
Confidence 999999999 44 66788899999999999988876543
No 68
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.96 E-value=1.5e-27 Score=225.65 Aligned_cols=285 Identities=24% Similarity=0.343 Sum_probs=204.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
++++|||+|+|.+|.+....+-..-++|++|.+ +... +..--.|+.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSP---------RnyF----lFTPLLpS~--------------------- 99 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSP---------RNYF----LFTPLLPST--------------------- 99 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEecc---------ccce----EEeeccCCc---------------------
Confidence 467899999999999999999888899999993 1110 000001110
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHH--hCCcEEEEeEEEEEeCCEEEEEe----CC--CceEEEEcCeEEEcC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLS--NAGVKLYEGEGKIVGPNEVEVTQ----LD--GTKLSYSAKHILIAT 173 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~gv~~~~~~~~~i~~~~~~v~~----~~--g~~~~~~~d~liiAt 173 (498)
.-..++.+.+.+... .+.+ ..++.++...+..+|+....|+. .+ .....+.||+||+|+
T Consensus 100 --~vGTve~rSIvEPIr-----------~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~ 166 (491)
T KOG2495|consen 100 --TVGTVELRSIVEPIR-----------AIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAV 166 (491)
T ss_pred --cccceeehhhhhhHH-----------HHhhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEec
Confidence 001122222222111 1112 22688888888888887665543 12 224678999999999
Q ss_pred CCCCCCCCCCCCC-ccc---ChHHHhc-------------cccC-------CCeEEEEcCCHHHHHHHHHHHHC------
Q 042564 174 GSRAQRAPIPGQE-LAI---TSDEALS-------------LEEL-------PKRAVVLGGGYIAVEFASIWRGM------ 223 (498)
Q Consensus 174 G~~p~~p~i~g~~-~~~---~~~~~~~-------------l~~~-------~~~v~ViG~G~~g~e~a~~l~~~------ 223 (498)
|+.++.+.+||.. +.+ ..++..+ +..+ --+++|||||++|+|+|..|+.+
T Consensus 167 GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~ 246 (491)
T KOG2495|consen 167 GAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLR 246 (491)
T ss_pred cCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHH
Confidence 9999999999973 211 1111111 1111 12889999999999999998765
Q ss_pred --------CCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe--EEEcCEEEEe
Q 042564 224 --------GSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE--EIVADVVLFA 293 (498)
Q Consensus 224 --------g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~D~vi~a 293 (498)
..+||+++..+++|+.||..+.+..++.+.+.||++.+++.|..+.. ..+.+...+|+ +|++-+++|+
T Consensus 247 k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~--~~I~~~~~~g~~~~iPYG~lVWa 324 (491)
T KOG2495|consen 247 KIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE--KTIHAKTKDGEIEEIPYGLLVWA 324 (491)
T ss_pred HhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecC--cEEEEEcCCCceeeecceEEEec
Confidence 45899999999999999999999999999999999999999998843 34555555664 6899999999
Q ss_pred cCCCcCCCCCCcccCCceeCCCC--CeEcCCCCCC-CCCCeEEecccCCC---CCChHHHHHHHHHHHHHH
Q 042564 294 TGRAPNTKRLNLKAVGVEVDQTG--AVKVDENSRT-NVPSIWAVGDVTNR---MNLTPVALMEGTCFAKTV 358 (498)
Q Consensus 294 ~G~~p~~~~l~l~~~gi~~~~~g--~i~vd~~~~t-~~~~iya~GD~~~~---~~~~~~A~~~g~~aa~~i 358 (498)
||..|..-. +.+.-++++.| .+.||++||. +.+||||+|||+.. .+++.+|.+||.++|+++
T Consensus 325 tG~~~rp~~---k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~f 392 (491)
T KOG2495|consen 325 TGNGPRPVI---KDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNF 392 (491)
T ss_pred CCCCCchhh---hhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHH
Confidence 998876643 22233344545 8999999997 89999999999943 557889999999999986
No 69
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=3.9e-27 Score=250.08 Aligned_cols=275 Identities=23% Similarity=0.363 Sum_probs=192.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
.++|+||||||+|+++|..|++.|++|+|+|+ ...+||.. ..|..|.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~---------~~~~GG~l-~~gip~~----------------------- 356 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDR---------HPEIGGML-TFGIPPF----------------------- 356 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeC---------CCCCCCee-eccCCcc-----------------------
Confidence 57899999999999999999999999999994 33455552 2232221
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~p~ 181 (498)
.++. .++ ......+.+.|++++.++... . .+...+ ....||.|++|||+.+ ..++
T Consensus 357 ----~l~~-~~~-----------~~~~~~~~~~Gv~~~~~~~v~---~--~~~~~~---l~~~~DaV~latGa~~~~~~~ 412 (639)
T PRK12809 357 ----KLDK-TVL-----------SQRREIFTAMGIDFHLNCEIG---R--DITFSD---LTSEYDAVFIGVGTYGMMRAD 412 (639)
T ss_pred ----cCCH-HHH-----------HHHHHHHHHCCeEEEcCCccC---C--cCCHHH---HHhcCCEEEEeCCCCCCCCCC
Confidence 1111 111 112234566799988765221 1 111111 1356899999999874 4566
Q ss_pred CCCCCc--ccChH--------HHhcc---------ccCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCCC-CCCC
Q 042564 182 IPGQEL--AITSD--------EALSL---------EELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELP-LRGF 240 (498)
Q Consensus 182 i~g~~~--~~~~~--------~~~~l---------~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~-l~~~ 240 (498)
+||.+. +++.- +...+ ....++++|+|+|.+++++|..+.++|. +|+++++.+.. ++..
T Consensus 413 i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~ 492 (639)
T PRK12809 413 LPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGS 492 (639)
T ss_pred CCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC
Confidence 777542 23221 11111 1135899999999999999999888885 79999987643 4434
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEEE---C------CC-----------eEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVIT---D------HG-----------EEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~---~------~g-----------~~i~~D~vi~a~G~~p 298 (498)
..++. .+++.||++++++.+.+|..++++ + .+.+ . +| ..+++|.||+|+|+.|
T Consensus 493 ~~e~~-----~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 493 RKEVV-----NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred HHHHH-----HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence 33332 356789999999999999754432 2 2211 1 12 2689999999999999
Q ss_pred CCCCCCcccCCceeCCCCCeEcCC----CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHhC
Q 042564 299 NTKRLNLKAVGVEVDQTGAVKVDE----NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 299 ~~~~l~l~~~gi~~~~~g~i~vd~----~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 360 (498)
+...+ ++..+++++++|.|.+|+ +++|+.|+|||+||++.++.++..|+.+|+.||++|..
T Consensus 568 ~~~~~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 568 HAMPW-LQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred Ccccc-ccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 75432 567889999889999986 48999999999999998888889999999999999863
No 70
>PRK13984 putative oxidoreductase; Provisional
Probab=99.96 E-value=3.4e-27 Score=250.29 Aligned_cols=274 Identities=22% Similarity=0.317 Sum_probs=184.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
..++|+|||+|+||+++|..|++.|++|+|+|+ ....||...+ .+|. +
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~---------~~~~gG~~~~--~i~~------------------~--- 329 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYES---------LSKPGGVMRY--GIPS------------------Y--- 329 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCceEee--cCCc------------------c---
Confidence 457899999999999999999999999999994 2334444211 1110 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p 180 (498)
.+ ..+++.+ ....+++.|++++.++....+ +...+ ....||+||+|||+. |+.+
T Consensus 330 -----~~-~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~~-----~~~~~---~~~~yD~vilAtGa~~~r~l 384 (604)
T PRK13984 330 -----RL-PDEALDK-----------DIAFIEALGVKIHLNTRVGKD-----IPLEE---LREKHDAVFLSTGFTLGRST 384 (604)
T ss_pred -----cC-CHHHHHH-----------HHHHHHHCCcEEECCCEeCCc-----CCHHH---HHhcCCEEEEEcCcCCCccC
Confidence 00 0111111 123456678998877533211 11111 135799999999987 6778
Q ss_pred CCCCCCc--ccChHHHhc-c----------ccCCCeEEEEcCCHHHHHHHHHHHHCCC------cEEEEeeC--CCCCCC
Q 042564 181 PIPGQEL--AITSDEALS-L----------EELPKRAVVLGGGYIAVEFASIWRGMGS------TVDLLFRK--ELPLRG 239 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~-l----------~~~~~~v~ViG~G~~g~e~a~~l~~~g~------~V~lv~~~--~~~l~~ 239 (498)
++||.+. +++..++.. + ...+++|+|||||++|+|+|..+.+++. +|+++... ...++.
T Consensus 385 ~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~ 464 (604)
T PRK13984 385 RIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA 464 (604)
T ss_pred CCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC
Confidence 8998753 333333221 1 1236899999999999999999998753 67876432 222332
Q ss_pred CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEEC-------------------CCeEEEcCEEEEecCCCcC
Q 042564 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVITD-------------------HGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 240 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~-------------------~g~~i~~D~vi~a~G~~p~ 299 (498)
...+ +.+ +.+.||+++++..+.++..+++.+ .+++. +++++++|.||+|+|+.|+
T Consensus 465 ~~~e----~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~ 539 (604)
T PRK13984 465 DMEE----IEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD 539 (604)
T ss_pred CHHH----HHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence 2222 222 345799999998888886544332 22221 1236999999999999999
Q ss_pred CCCCCcc-cCCceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 300 TKRLNLK-AVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 300 ~~~l~l~-~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
++++..+ ..++++ ++|+|.||++++|++|+|||+||++..+.+ ..|+.+|+.||++|.
T Consensus 540 ~~~l~~~~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~~-v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 540 YSYLPEELKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGPDI-IHGVADGYWAAEGID 598 (604)
T ss_pred hhhhhhhhccCccc-cCCeEEeCCCCccCCCCEEEecCcCCchHH-HHHHHHHHHHHHHHH
Confidence 9875311 124555 368899999999999999999999987754 679999999999984
No 71
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.95 E-value=1e-25 Score=249.31 Aligned_cols=281 Identities=17% Similarity=0.153 Sum_probs=186.8
Q ss_pred ccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhc
Q 042564 18 EQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARS 97 (498)
Q Consensus 18 ~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~ 97 (498)
+.+...+||+||||||||++||+.|++.|++|+|+|+ ...+||.......
T Consensus 158 ~~~~~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~---------~~~~GG~~~~~~~--------------------- 207 (985)
T TIGR01372 158 DKVNAHCDVLVVGAGPAGLAAALAAARAGARVILVDE---------QPEAGGSLLSEAE--------------------- 207 (985)
T ss_pred hhhcccCCEEEECCCHHHHHHHHHHHhCCCcEEEEec---------CCCCCCeeecccc---------------------
Confidence 3344568999999999999999999999999999994 3345666432110
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeE-EEEEeCCE-EE-EEe------------CCCce
Q 042564 98 YGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGE-GKIVGPNE-VE-VTQ------------LDGTK 161 (498)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~-~~~i~~~~-~~-v~~------------~~g~~ 161 (498)
... ..+..++... ....+... +++++.++ +..+..+. +. +.. .....
T Consensus 208 ---~~~---g~~~~~~~~~-----------~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~ 270 (985)
T TIGR01372 208 ---TID---GKPAADWAAA-----------TVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERL 270 (985)
T ss_pred ---ccC---CccHHHHHHH-----------HHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccce
Confidence 000 1111111111 11222323 47777654 43443321 11 100 00112
Q ss_pred EEEEcCeEEEcCCCCCCCCCCCCCCc--ccChHHHh---cc-c-cCCCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeC
Q 042564 162 LSYSAKHILIATGSRAQRAPIPGQEL--AITSDEAL---SL-E-ELPKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRK 233 (498)
Q Consensus 162 ~~~~~d~liiAtG~~p~~p~i~g~~~--~~~~~~~~---~l-~-~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~ 233 (498)
..+.|++||||||+.++.|++||.+. +++..... .. . ..+++++|+|+|++++|+|..|.+.|. .|+++++.
T Consensus 271 ~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~ 350 (985)
T TIGR01372 271 WRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR 350 (985)
T ss_pred EEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence 36899999999999999999998754 44433222 11 1 135899999999999999999999996 57788765
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC----CCeEEEcCEEEEecCCCcCCCCCCcccCC
Q 042564 234 ELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD----HGEEIVADVVLFATGRAPNTKRLNLKAVG 309 (498)
Q Consensus 234 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~----~g~~i~~D~vi~a~G~~p~~~~l~l~~~g 309 (498)
+.+ ...+.+.+++.||++++++.+.++..++....|++. ++++++||.|+++.|+.||+++. ..++
T Consensus 351 ~~~--------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~--~~lg 420 (985)
T TIGR01372 351 ADV--------SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLF--SQRG 420 (985)
T ss_pred cch--------hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHH--HhcC
Confidence 432 334567788999999999999999765543334433 45679999999999999999873 4444
Q ss_pred --ceeCCCCCeEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 310 --VEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 310 --i~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
+.+++.....+ -.|++|+||++||+++.. ....|..+|+.||..++
T Consensus 421 ~~~~~~~~~~~~~---~~t~v~gVyaaGD~~g~~-~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 421 GKLAWDAAIAAFL---PGDAVQGCILAGAANGLF-GLAAALADGAAAGAAAA 468 (985)
T ss_pred CCeeeccccCcee---cCCCCCCeEEeeccCCcc-CHHHHHHHHHHHHHHHH
Confidence 33343211111 137899999999998754 55679999999998874
No 72
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-26 Score=197.99 Aligned_cols=269 Identities=23% Similarity=0.282 Sum_probs=189.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
+.+|+|||+|||+.+||+++++...|.+|+|.- .-..-..||+... -..+++++.|...+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~-----~~~~i~pGGQLtT---------------TT~veNfPGFPdgi 67 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGM-----MANGIAPGGQLTT---------------TTDVENFPGFPDGI 67 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeee-----eccCcCCCceeee---------------eeccccCCCCCccc
Confidence 347999999999999999999999999999920 0001123444221 11233344443222
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
. -.+++++. ++...+.|.+++..++..+| ...+++.++.+ .+.+|.+|+|||+..+..
T Consensus 68 ~------G~~l~d~m-----------rkqs~r~Gt~i~tEtVskv~~sskpF~l~td~~---~v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 68 T------GPELMDKM-----------RKQSERFGTEIITETVSKVDLSSKPFKLWTDAR---PVTADAVILATGASAKRL 127 (322)
T ss_pred c------cHHHHHHH-----------HHHHHhhcceeeeeehhhccccCCCeEEEecCC---ceeeeeEEEecccceeee
Confidence 2 23333333 34455679999998877665 34566666443 789999999999998888
Q ss_pred CCCCC-Cc-c----cChHHHhcc---ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHH-H
Q 042564 181 PIPGQ-EL-A----ITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA-R 250 (498)
Q Consensus 181 ~i~g~-~~-~----~~~~~~~~l---~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~-~ 250 (498)
.+||. +. + ++.....+- -...|..+|||||.+++|-|.+|.+.+.+|+++.|.+.+- .++.++ +
T Consensus 128 ~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fR------As~~Mq~r 201 (322)
T KOG0404|consen 128 HLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFR------ASKIMQQR 201 (322)
T ss_pred ecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhh------HHHHHHHH
Confidence 88876 21 1 222222221 1235788999999999999999999999999999987642 233333 3
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCe---EEEE---ECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCC-C
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEG---VKVI---TDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDE-N 323 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~---~~v~---~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~-~ 323 (498)
..+..+|++++|+.+.+...+++. +.+. +.+.+.++++-+++++|..|++.++ +. ++++|++|+|.+-+ .
T Consensus 202 a~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l--~g-qve~d~~GYi~t~pgt 278 (322)
T KOG0404|consen 202 AEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFL--KG-QVELDEDGYIVTRPGT 278 (322)
T ss_pred HhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHh--cC-ceeeccCceEEeccCc
Confidence 445569999999888877665432 3332 2233468999999999999999984 44 79999999999985 6
Q ss_pred CCCCCCCeEEecccCCC
Q 042564 324 SRTNVPSIWAVGDVTNR 340 (498)
Q Consensus 324 ~~t~~~~iya~GD~~~~ 340 (498)
..||+|++||+||+...
T Consensus 279 s~TsvpG~FAAGDVqD~ 295 (322)
T KOG0404|consen 279 SLTSVPGVFAAGDVQDK 295 (322)
T ss_pred ccccccceeeccccchH
Confidence 68999999999999874
No 73
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=1.3e-25 Score=227.25 Aligned_cols=282 Identities=20% Similarity=0.268 Sum_probs=185.4
Q ss_pred CCccEEEECCChhHHHHHHHHHh--CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
..++|+||||||||++||..|++ .|++|+|+|+ ...+||.. ..|..|.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~---------~p~pgGlv-r~gvaP~-------------------- 74 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIER---------LPTPFGLV-RSGVAPD-------------------- 74 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEec---------CCCCcceE-eeccCCC--------------------
Confidence 35689999999999999999987 7999999994 33455543 2222221
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-C
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-Q 178 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~ 178 (498)
+.. ...+...+..++...+++++.+... . ..++.++. ...||.||+|||+.+ +
T Consensus 75 ----------~~~--------~k~v~~~~~~~~~~~~v~~~~nv~v--g---~dvtl~~L---~~~yDaVIlAtGa~~~~ 128 (491)
T PLN02852 75 ----------HPE--------TKNVTNQFSRVATDDRVSFFGNVTL--G---RDVSLSEL---RDLYHVVVLAYGAESDR 128 (491)
T ss_pred ----------cch--------hHHHHHHHHHHHHHCCeEEEcCEEE--C---ccccHHHH---hhhCCEEEEecCCCCCC
Confidence 000 0111222333455567887664321 1 11222221 347999999999986 6
Q ss_pred CCCCCCCCc--ccChHHHhc----------cc---cCCCeEEEEcCCHHHHHHHHHHHHC--------------------
Q 042564 179 RAPIPGQEL--AITSDEALS----------LE---ELPKRAVVLGGGYIAVEFASIWRGM-------------------- 223 (498)
Q Consensus 179 ~p~i~g~~~--~~~~~~~~~----------l~---~~~~~v~ViG~G~~g~e~a~~l~~~-------------------- 223 (498)
.+++||.+. +++..++.. +. ...++|+|||+|++|+|+|..|.+.
T Consensus 129 ~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~ 208 (491)
T PLN02852 129 RLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGS 208 (491)
T ss_pred CCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhC
Confidence 778998653 455554421 11 2368999999999999999998775
Q ss_pred CC-cEEEEeeCCCCCCCC-CHH-------------------------------------HHHHHHHHHHh---------C
Q 042564 224 GS-TVDLLFRKELPLRGF-DDE-------------------------------------MRAVVARNLEG---------R 255 (498)
Q Consensus 224 g~-~V~lv~~~~~~l~~~-~~~-------------------------------------~~~~l~~~l~~---------~ 255 (498)
+. +|+++.|....-..| .++ ..+.+.+...+ +
T Consensus 209 ~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~ 288 (491)
T PLN02852 209 SVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQR 288 (491)
T ss_pred CCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCc
Confidence 55 599998876311000 111 11222222222 5
Q ss_pred CCEEEcCccEEEEEEe--C-Ce-EEEEEC-----------------CCe--EEEcCEEEEecCCC--cCCCC-CCcccCC
Q 042564 256 GINLHPRTTIKELIKS--E-EG-VKVITD-----------------HGE--EIVADVVLFATGRA--PNTKR-LNLKAVG 309 (498)
Q Consensus 256 Gv~i~~~~~v~~i~~~--~-~~-~~v~~~-----------------~g~--~i~~D~vi~a~G~~--p~~~~-l~l~~~g 309 (498)
+|.+++.....+|..+ + +. ..+.+. +|+ +++||.||.++|+. |...+ ++ ...+
T Consensus 289 ~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~-~~~g 367 (491)
T PLN02852 289 ELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFD-HKRG 367 (491)
T ss_pred eEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccc-cCcC
Confidence 7999999888888742 1 12 222221 232 58999999999998 55542 21 3346
Q ss_pred ceeCCCCCeEcCCCCCCCCCCeEEecccCCCCC-ChHHHHHHHHHHHHHHhC
Q 042564 310 VEVDQTGAVKVDENSRTNVPSIWAVGDVTNRMN-LTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 310 i~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 360 (498)
+..+.+|+|.+|+.++|++|+|||+|||..++. +...++.+|+.++++|..
T Consensus 368 v~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~ 419 (491)
T PLN02852 368 VVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAE 419 (491)
T ss_pred eeECCCceEEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHH
Confidence 777888999999888999999999999998754 777889999999998863
No 74
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.95 E-value=6.1e-26 Score=230.57 Aligned_cols=306 Identities=17% Similarity=0.157 Sum_probs=193.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCch--------hhHHHHHHhHhhHH
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCV--------PKKILVYGASFGGE 91 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~--------p~~~l~~~~~~~~~ 91 (498)
+...++|+|||||+|||+||++|++.|.+|+++|+ ...+||+|.+.... |.+...+.+.+...
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~---------~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L 77 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFER---------EKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESL 77 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEec---------CCCCcceeecCCCcCCCccccCCCCcccchhhhhhh
Confidence 33457999999999999999999999999999995 56689999765322 21111111111111
Q ss_pred Hhh-------hhcCCcccccc-cccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcE--EEEeE-EEEEe--CCEEEEEeCC
Q 042564 92 LED-------ARSYGWEVHEK-IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVK--LYEGE-GKIVG--PNEVEVTQLD 158 (498)
Q Consensus 92 ~~~-------~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~-~~~i~--~~~~~v~~~~ 158 (498)
..+ +..|.+..... ...+...+ . ...++.++++.+.+..++. +..++ +..++ .+.+.|...+
T Consensus 78 ~tn~p~~~m~f~dfp~~~~~~~~~~~~~~f-p----~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~ 152 (461)
T PLN02172 78 RTNLPRECMGYRDFPFVPRFDDESRDSRRY-P----SHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKN 152 (461)
T ss_pred hccCCHhhccCCCCCCCcccccccCcCCCC-C----CHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEc
Confidence 111 11222110000 00000000 0 1123445556666667766 44443 55554 3567777643
Q ss_pred C--ceEEEEcCeEEEcCC--CCCCCCCCCCCCc----ccChHHHhcccc-CCCeEEEEcCCHHHHHHHHHHHHCCCcEEE
Q 042564 159 G--TKLSYSAKHILIATG--SRAQRAPIPGQEL----AITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGSTVDL 229 (498)
Q Consensus 159 g--~~~~~~~d~liiAtG--~~p~~p~i~g~~~----~~~~~~~~~l~~-~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l 229 (498)
+ ...+..||+||+||| +.|++|.+||.+. .+.+.++..... ..|+|+|||+|.+|+|+|..|...+.+|++
T Consensus 153 ~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l 232 (461)
T PLN02172 153 SGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHI 232 (461)
T ss_pred CCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEE
Confidence 2 223568999999999 7899999999753 223333332222 468999999999999999999999999999
Q ss_pred EeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCC
Q 042564 230 LFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVG 309 (498)
Q Consensus 230 v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g 309 (498)
+.|...... . +.+......+..+..|..+..++ .|++.||+.+++|.||+|||++|+.+++ +.
T Consensus 233 ~~r~~~~~~-~---------~~~~~~~~~v~~~~~I~~~~~~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL--~~-- 295 (461)
T PLN02172 233 ASRASESDT-Y---------EKLPVPQNNLWMHSEIDTAHEDG---SIVFKNGKVVYADTIVHCTGYKYHFPFL--ET-- 295 (461)
T ss_pred EEeeccccc-c---------ccCcCCCCceEECCcccceecCC---eEEECCCCCccCCEEEECCcCCcccccc--Cc--
Confidence 998754211 0 01111223455566676664332 3888999999999999999999999984 32
Q ss_pred ceeCCCCCeEcCCC---------CCCC-CCCeEEecccCCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 310 VEVDQTGAVKVDEN---------SRTN-VPSIWAVGDVTNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 310 i~~~~~g~i~vd~~---------~~t~-~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
.|.+.+|++ +-.. .|+++.+|=.. .....+.+..|++++|+.+.|..
T Consensus 296 -----~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~-~~~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 296 -----NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPA-MGIQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred -----ccceeeCCCcchhhHHhhcCCCCCCcEEEEeccc-cccCchhHHHHHHHHHHHHcCCC
Confidence 233444432 1123 48999999653 23455788999999999998754
No 75
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.9e-27 Score=216.30 Aligned_cols=279 Identities=25% Similarity=0.361 Sum_probs=195.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
-|||+||||||||-+||++++|.|.+.-|+- ..+||+.+..-.|. +| +
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a-----------erfGGQvldT~~IE------------------Nf-I-- 258 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA-----------ERFGGQVLDTMGIE------------------NF-I-- 258 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh-----------hhhCCeeccccchh------------------he-e--
Confidence 5999999999999999999999999887774 45777753221111 00 0
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe-----CCEEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG-----PNEVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~-----~~~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
..+...-+++... ++...+++.|+++... +..+. .+...|++.+|. .+.++.+|+|||++
T Consensus 259 -sv~~teGpkl~~a-----------le~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGa--vLkaktvIlstGAr 324 (520)
T COG3634 259 -SVPETEGPKLAAA-----------LEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGA--VLKARTVILATGAR 324 (520)
T ss_pred -ccccccchHHHHH-----------HHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCc--eeccceEEEecCcc
Confidence 0011112223333 3333444555555432 33332 346788888886 89999999999999
Q ss_pred CCCCCCCCCCc--------ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHH
Q 042564 177 AQRAPIPGQEL--------AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVV 248 (498)
Q Consensus 177 p~~p~i~g~~~--------~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l 248 (498)
.+-.++||-+. +-+++..+ ...|+|+|||||.+|+|.|..|+..-..||+++..+.+- .-+.+
T Consensus 325 WRn~nvPGE~e~rnKGVayCPHCDGPL---F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------AD~VL 395 (520)
T COG3634 325 WRNMNVPGEDEYRNKGVAYCPHCDGPL---FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------ADAVL 395 (520)
T ss_pred hhcCCCCchHHHhhCCeeeCCCCCCcc---cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh------hHHHH
Confidence 99889998643 22222211 236899999999999999999998888999998755421 12345
Q ss_pred HHHHHhC-CCEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcC
Q 042564 249 ARNLEGR-GINLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD 321 (498)
Q Consensus 249 ~~~l~~~-Gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd 321 (498)
++.+... +|+++.|...++|.++++. ..+.+ .+|+ .++-+-|++-+|..||++| |+.. +++++.|-|.||
T Consensus 396 q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~W--Lkg~-vel~~rGEIivD 472 (520)
T COG3634 396 QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVD 472 (520)
T ss_pred HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhH--hhch-hhcCcCccEEEe
Confidence 5555544 8999999999999888655 23333 2344 4566779999999999999 5655 889999999999
Q ss_pred CCCCCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 322 ENSRTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 322 ~~~~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
....||+|+|||+|||... ++....|+.+|..|+-..+
T Consensus 473 ~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AF 511 (520)
T COG3634 473 ARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAF 511 (520)
T ss_pred cCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhh
Confidence 9999999999999999975 3444456666665555443
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.93 E-value=2.5e-24 Score=226.27 Aligned_cols=272 Identities=27% Similarity=0.400 Sum_probs=185.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
...+|+|||+||+|+++|..|++.|++|+++|+ ...+||... . .+|. |
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~---------~~~~GG~l~-~-gip~------------------~--- 183 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEA---------GPKLGGMMR-Y-GIPA------------------Y--- 183 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec---------CCCCCCeee-e-cCCC------------------c---
Confidence 346899999999999999999999999999994 344565421 1 1220 0
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC-CCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA-QRA 180 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p-~~p 180 (498)
.+. .++... ....+.+.|+++..+.....+. .. + .....||.|++|||+.+ ..+
T Consensus 184 -----~~~-~~~~~~-----------~l~~~~~~Gv~~~~~~~~~~~~---~~---~--~~~~~~D~Vi~AtG~~~~~~~ 238 (564)
T PRK12771 184 -----RLP-REVLDA-----------EIQRILDLGVEVRLGVRVGEDI---TL---E--QLEGEFDAVFVAIGAQLGKRL 238 (564)
T ss_pred -----cCC-HHHHHH-----------HHHHHHHCCCEEEeCCEECCcC---CH---H--HHHhhCCEEEEeeCCCCCCcC
Confidence 000 111111 1123445788877754221110 00 0 01235899999999874 344
Q ss_pred CCCCCCc--ccChHHHhc------cccCCCeEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCC-CCCCCHHHHHHHHH
Q 042564 181 PIPGQEL--AITSDEALS------LEELPKRAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELP-LRGFDDEMRAVVAR 250 (498)
Q Consensus 181 ~i~g~~~--~~~~~~~~~------l~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~-l~~~~~~~~~~l~~ 250 (498)
.+++.+. .+...++.. .....++++|+|+|.++++++..+.+++ .+|+++.+.+.. ++....++ +
T Consensus 239 ~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~-----~ 313 (564)
T PRK12771 239 PIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEI-----E 313 (564)
T ss_pred CCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHH-----H
Confidence 5666532 222222211 1224689999999999999999999988 679999886542 33333322 2
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCe-EE-----EEE----CC-------C--eEEEcCEEEEecCCCcCCCCCCccc-CCc
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEG-VK-----VIT----DH-------G--EEIVADVVLFATGRAPNTKRLNLKA-VGV 310 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~-~~-----v~~----~~-------g--~~i~~D~vi~a~G~~p~~~~l~l~~-~gi 310 (498)
...+.||++++++.+.++..++++ .. +.. .+ | .++++|.||+|+|..|+..++ ++ .++
T Consensus 314 ~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~--~~~~gl 391 (564)
T PRK12771 314 EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGL--ESVPGV 391 (564)
T ss_pred HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhh--hhccCc
Confidence 345679999999999999765433 11 221 12 2 369999999999999998774 43 567
Q ss_pred eeCCCCCeEcCC-CCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHH
Q 042564 311 EVDQTGAVKVDE-NSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358 (498)
Q Consensus 311 ~~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i 358 (498)
. +++|+|.||+ +++|++|+|||+||++.++.++..|+.+|+.||.+|
T Consensus 392 ~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i 439 (564)
T PRK12771 392 E-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNI 439 (564)
T ss_pred c-cCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHH
Confidence 7 7789999998 789999999999999988888999999999999987
No 77
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.92 E-value=1.7e-24 Score=203.19 Aligned_cols=225 Identities=20% Similarity=0.390 Sum_probs=183.4
Q ss_pred hCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC-CCCC--------CcccChHHHhcccc---C
Q 042564 134 NAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQ--------ELAITSDEALSLEE---L 200 (498)
Q Consensus 134 ~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~-i~g~--------~~~~~~~~~~~l~~---~ 200 (498)
+-||-+..|. ++.+|.....|.+.||. ++.||+++||||.+|.... +... ..+....|+.+++. .
T Consensus 269 nGGvAvl~G~kvvkid~~d~~V~LnDG~--~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~ae 346 (659)
T KOG1346|consen 269 NGGVAVLRGRKVVKIDEEDKKVILNDGT--TIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAE 346 (659)
T ss_pred cCceEEEeccceEEeecccCeEEecCCc--EeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhh
Confidence 3589999997 77899998889998987 9999999999999997653 2211 12455666666543 3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC----CCcEEEEeeCCCCCCC-CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGM----GSTVDLLFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV 275 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~----g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~ 275 (498)
.++|.|||+|+.|-|+|..|.+. |.+|+-+......+.. ++.-++++-.+.+++.||.++.|..|.++......+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl 426 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNL 426 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccce
Confidence 47999999999999999998753 7788877665544444 667888898999999999999999999998777778
Q ss_pred EEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCC-CCeEcCCCCCCCCCCeEEecccCCC---------CCChH
Q 042564 276 KVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQT-GAVKVDENSRTNVPSIWAVGDVTNR---------MNLTP 345 (498)
Q Consensus 276 ~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~-g~i~vd~~~~t~~~~iya~GD~~~~---------~~~~~ 345 (498)
.+.++||.++..|+|++|+|..||+++ .+..|+++|++ |++.||..++. ..|||++||.+.. ...+.
T Consensus 427 ~lkL~dG~~l~tD~vVvavG~ePN~el--a~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF~D~~LGrRRVehhd 503 (659)
T KOG1346|consen 427 VLKLSDGSELRTDLVVVAVGEEPNSEL--AEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACFEDGVLGRRRVEHHD 503 (659)
T ss_pred EEEecCCCeeeeeeEEEEecCCCchhh--cccccceeecccCcEEeeheeec-ccceeeecchhhhhcccccceeccccc
Confidence 999999999999999999999999998 67788988864 78999998875 4789999999863 23445
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 042564 346 VALMEGTCFAKTVFGGQP 363 (498)
Q Consensus 346 ~A~~~g~~aa~~i~~~~~ 363 (498)
.|.-.||.|++||.|..+
T Consensus 504 havvSGRLAGENMtgAak 521 (659)
T KOG1346|consen 504 HAVVSGRLAGENMTGAAK 521 (659)
T ss_pred cceeeceecccccccccC
Confidence 788899999999987543
No 78
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=99.91 E-value=5.9e-24 Score=173.56 Aligned_cols=110 Identities=32% Similarity=0.504 Sum_probs=101.3
Q ss_pred CcEEEeccCCeeEeeCCHHHHHHcCCCCEEEEEEecCCCccccccCCceeEEEEEEECCCCeEEEEEEECCChhHHHHHH
Q 042564 371 VPCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETEKVLGASMCGPEAPEIMQGI 450 (498)
Q Consensus 371 ~~~~~~~~~~~~~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i~G~~~~g~~a~~~i~~~ 450 (498)
+|+++|++|++++||+||+||+++++ ++.+....+....++...+.+.+|+|+++|+++++|+|+|++|++|.|+|+.+
T Consensus 1 vP~~vft~p~ia~vGlte~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~ 79 (110)
T PF02852_consen 1 VPTVVFTDPEIASVGLTEEEARKQGI-DYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINEL 79 (110)
T ss_dssp CEEEEESSSEEEEEES-HHHHHHHTS-GEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHH
T ss_pred CCEEEECCCceEEEccCHHHHHhccC-ceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHH
Confidence 58999999999999999999999854 68888888888888877777899999999999999999999999999999999
Q ss_pred HHHHHCCCCHHHHhcCcCCCCChhHHHHHHH
Q 042564 451 AVALKCGATKAQFDSTVGIHPSSAEEFVTMR 481 (498)
Q Consensus 451 ~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~ 481 (498)
+++|++++|++++.+.+++|||++|.+.+++
T Consensus 80 ~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 80 ALAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp HHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred HHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 9999999999999999999999999988753
No 79
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.89 E-value=2.2e-21 Score=199.82 Aligned_cols=306 Identities=22% Similarity=0.250 Sum_probs=160.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc-----Cch---hhHHHHHHhHhhHHHhhh
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR-----GCV---PKKILVYGASFGGELEDA 95 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~-----g~~---p~~~l~~~~~~~~~~~~~ 95 (498)
++|+|||||++||++|..|.+.|.+++++|+ ...+||.|.+. ||- ++ +... ....+..+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~---------~~~iGG~W~~~~~~~~g~~~~y~s-l~~n---~sk~~~~f 68 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEK---------SDDIGGLWRYTENPEDGRSSVYDS-LHTN---TSKEMMAF 68 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEES---------SSSSSGGGCHSTTCCCSEGGGSTT--B-S---S-GGGSCC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEec---------CCCCCccCeeCCcCCCCccccccc-eEEe---eCchHhcC
Confidence 5799999999999999999999999999997 77899998643 221 11 0000 01111122
Q ss_pred hcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcE--EEEeE-EEEE---eC----CEEEEEeC-CCceEEE
Q 042564 96 RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVK--LYEGE-GKIV---GP----NEVEVTQL-DGTKLSY 164 (498)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~-~~~i---~~----~~~~v~~~-~g~~~~~ 164 (498)
..|.++-+...-..-.++.++.+.+ .++.++. +..++ +..+ ++ +.+.|... +|+..+.
T Consensus 69 sdfp~p~~~p~f~~~~~v~~Yl~~Y-----------a~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~ 137 (531)
T PF00743_consen 69 SDFPFPEDYPDFPSHSEVLEYLESY-----------AEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETE 137 (531)
T ss_dssp TTS-HCCCCSSSEBHHHHHHHHHHH-----------HHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEE
T ss_pred CCcCCCCCCCCCCCHHHHHHHHHHH-----------HhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEE
Confidence 2333221111112223333333333 3333321 11222 2222 21 46888764 4555567
Q ss_pred EcCeEEEcCC--CCCCCCC--CCCCCc----ccChHHHhcccc-CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 165 SAKHILIATG--SRAQRAP--IPGQEL----AITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 165 ~~d~liiAtG--~~p~~p~--i~g~~~----~~~~~~~~~l~~-~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.||+||+||| +.|++|. +||.+. ++++.++.+.+. ..|+|+|||+|.+|+++|..+.....+|++..|...
T Consensus 138 ~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 138 EFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp EECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred EeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 7999999999 5688885 889763 456666655333 468999999999999999999999999999888764
Q ss_pred C-CCCC-------CH----------------HHHHHHH-HH--------------------------------HHhCCCE
Q 042564 236 P-LRGF-------DD----------------EMRAVVA-RN--------------------------------LEGRGIN 258 (498)
Q Consensus 236 ~-l~~~-------~~----------------~~~~~l~-~~--------------------------------l~~~Gv~ 258 (498)
. +++. |. .+.+.+. +. +....|.
T Consensus 218 wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~ 297 (531)
T PF00743_consen 218 WVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIK 297 (531)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 2211 00 0111110 00 0011111
Q ss_pred EEcCccEEEEEEeCCeEEEEECCCeEE-EcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCC---CCCCCCeEEe
Q 042564 259 LHPRTTIKELIKSEEGVKVITDHGEEI-VADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENS---RTNVPSIWAV 334 (498)
Q Consensus 259 i~~~~~v~~i~~~~~~~~v~~~~g~~i-~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~---~t~~~~iya~ 334 (498)
+. ..|.++. + -.|.+.||+++ ++|.||+|||++....+|+ +.-+.... +.+..-.++ .-..|++..+
T Consensus 298 vk--~~I~~~~--~--~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~--~~~~~~~~-~~~~LYk~vfp~~~~~ptLafI 368 (531)
T PF00743_consen 298 VK--PDIKRFT--E--NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLD--ESLIKVDD-NRVRLYKHVFPPNLDHPTLAFI 368 (531)
T ss_dssp -E--E-EEEE---S--SEEEETTSEEEEE-SEEEE---EE---TTB---TTTT-S-S-SSSSEETTTEETETTSTTEEES
T ss_pred cc--ccccccc--c--ccccccccccccccccccccccccccccccc--cccccccc-cccccccccccccccccccccc
Confidence 11 1122221 1 23678899875 6999999999999998853 33233322 223232322 1246899999
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHhCCC
Q 042564 335 GDVTNRMNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 335 GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
|=+.......+.+..|++++|+-+.|..
T Consensus 369 G~~~~~g~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 369 GLVQPFGSIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp S-SBSSS-HHHHHHHHHHHHHHHHTTSS
T ss_pred cccccccccccccccccccccccccccc
Confidence 9765433456789999999999998754
No 80
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.85 E-value=1.8e-21 Score=177.81 Aligned_cols=184 Identities=36% Similarity=0.478 Sum_probs=125.0
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccccc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHE 104 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~~ 104 (498)
||+|||||+||++||.+|++.+.+|+|+|+ . .+.|.+..|+|...+.............
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 59 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEK----------S--PGTPYNSGCIPSPLLVEIAPHRHEFLPA--------- 59 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESS----------S--SHHHHHHSHHHHHHHHHHHHHHHHHHHH---------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEec----------c--cccccccccccccccccccccccccccc---------
Confidence 799999999999999999999999999983 2 2456667788876665544322211100
Q ss_pred ccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEE-eEEEEEeCCEE-------EEE-eCCCceEEEEcCeEEEcCCC
Q 042564 105 KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYE-GEGKIVGPNEV-------EVT-QLDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~-~~~~~i~~~~~-------~v~-~~~g~~~~~~~d~liiAtG~ 175 (498)
..+ .+.+.+.+.++++.. ..+..++.... .+. ...+...++.||+||+|||+
T Consensus 60 -----------------~~~--~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 60 -----------------RLF--KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp -----------------HHG--HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred -----------------ccc--ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcc
Confidence 000 111222334666633 33444433211 221 12334568999999999999
Q ss_pred CCCCCCCCCCC------cccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHH
Q 042564 176 RAQRAPIPGQE------LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVA 249 (498)
Q Consensus 176 ~p~~p~i~g~~------~~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~ 249 (498)
.|+.|++||.+ ...++.++......+++++|||
T Consensus 121 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG----------------------------------------- 159 (201)
T PF07992_consen 121 RPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG----------------------------------------- 159 (201)
T ss_dssp EEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES-----------------------------------------
T ss_pred ccceeecCCCccccccccccccccccccccccccccccc-----------------------------------------
Confidence 99999999863 2345555665555677999999
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
...+. +..+++++++|++.||+++||+.|
T Consensus 160 --------------------------------------------------~~~l~-~~~~~~~~~~g~i~vd~~~~t~~~ 188 (201)
T PF07992_consen 160 --------------------------------------------------TEFLA-EKLGVELDENGFIKVDENLQTSVP 188 (201)
T ss_dssp --------------------------------------------------TTTST-HHTTSTBTTTSSBEEBTTSBBSST
T ss_pred --------------------------------------------------ccccc-cccccccccccccccccccccccc
Confidence 44432 778899999999999999999999
Q ss_pred CeEEecccCCC
Q 042564 330 SIWAVGDVTNR 340 (498)
Q Consensus 330 ~iya~GD~~~~ 340 (498)
||||+|||++.
T Consensus 189 ~Iya~GD~a~~ 199 (201)
T PF07992_consen 189 GIYAAGDCAGI 199 (201)
T ss_dssp TEEE-GGGBEE
T ss_pred ccccccccccc
Confidence 99999999863
No 81
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.85 E-value=6.6e-21 Score=191.08 Aligned_cols=279 Identities=28% Similarity=0.362 Sum_probs=191.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+|.||||||||+++|..|++.|++|+++|+ ....||...+ | ||.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~---------~~~~GGll~y-G-IP~------------------------ 168 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFER---------VALDGGLLLY-G-IPD------------------------ 168 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCC---------cCCCceeEEe-c-Cch------------------------
Confidence 6899999999999999999999999999995 4555665321 1 331
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRAPI 182 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p~i 182 (498)
+.. -..+.....+++++.|++++.+..... .++.+ ...-.||.++++||+. |+..++
T Consensus 169 ----~kl----------~k~i~d~~i~~l~~~Gv~~~~~~~vG~-----~it~~---~L~~e~Dav~l~~G~~~~~~l~i 226 (457)
T COG0493 169 ----FKL----------PKDILDRRLELLERSGVEFKLNVRVGR-----DITLE---ELLKEYDAVFLATGAGKPRPLDI 226 (457)
T ss_pred ----hhc----------cchHHHHHHHHHHHcCeEEEEcceECC-----cCCHH---HHHHhhCEEEEeccccCCCCCCC
Confidence 000 011122233556778899988653321 12111 1134569999999954 777788
Q ss_pred CCCC--cccChHHHhc------cc-----cC----CCeEEEEcCCHHHHHHHHHHHHCCC-cEEEEeeCCCC--CCCCCH
Q 042564 183 PGQE--LAITSDEALS------LE-----EL----PKRAVVLGGGYIAVEFASIWRGMGS-TVDLLFRKELP--LRGFDD 242 (498)
Q Consensus 183 ~g~~--~~~~~~~~~~------l~-----~~----~~~v~ViG~G~~g~e~a~~l~~~g~-~V~lv~~~~~~--l~~~~~ 242 (498)
||.+ .++...+++. +. .. .++++|||+|.++++++....+.|+ +|+.+.+...- ...++.
T Consensus 227 ~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~ 306 (457)
T COG0493 227 PGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPT 306 (457)
T ss_pred CCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccc
Confidence 8875 2333333221 11 11 2899999999999999999889998 67777532221 111222
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEE-----EC--------------CCe--EEEcCEEEEecCCCcC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVI-----TD--------------HGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~-----~~--------------~g~--~i~~D~vi~a~G~~p~ 299 (498)
.-.+...+...++|+...+.....++..++++ + .+. .. .|+ .+.+|.|+.|+|+.++
T Consensus 307 ~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~ 386 (457)
T COG0493 307 WAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGD 386 (457)
T ss_pred cchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCC
Confidence 22344556677889988888888888765443 2 121 11 122 5779999999999998
Q ss_pred CCCCCcccCCceeCCCCCeEcCCCC-CCCCCCeEEecccCCCCCChHHHHHHHHHHHHHHh
Q 042564 300 TKRLNLKAVGVEVDQTGAVKVDENS-RTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 300 ~~~l~l~~~gi~~~~~g~i~vd~~~-~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~ 359 (498)
.........++..+..|.|.+++.+ +|+.|++||.||+..+..+...|+.+|+.+|+.|-
T Consensus 387 ~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 387 ATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred cccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHHhhh
Confidence 7653233346788889999999998 99999999999999988899999999999998763
No 82
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.80 E-value=1.6e-17 Score=166.08 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=119.5
Q ss_pred EEEcCCHHHHHHH-HHHH----HCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEE-E
Q 042564 205 VVLGGGYIAVEFA-SIWR----GMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKV-I 278 (498)
Q Consensus 205 ~ViG~G~~g~e~a-~~l~----~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v-~ 278 (498)
.|++.+.+|+|.+ ..+. ++|++|+++...+..++. .++.+.+.+.+++.|++++.++.|.++..+++++.. .
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG--~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~ 296 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG--LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVW 296 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch--HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence 7789999999998 7775 479999999988887765 478889999999999999999999999877665443 3
Q ss_pred ECCCe--EEEcCEEEEecCCCcCCCCC---------------------------------CcccCCceeCCCCCeEcCCC
Q 042564 279 TDHGE--EIVADVVLFATGRAPNTKRL---------------------------------NLKAVGVEVDQTGAVKVDEN 323 (498)
Q Consensus 279 ~~~g~--~i~~D~vi~a~G~~p~~~~l---------------------------------~l~~~gi~~~~~g~i~vd~~ 323 (498)
..+++ .+.+|.||+|+|+.++..+. ++...|+.+|+. ...+|..
T Consensus 297 ~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~~~~ 375 (422)
T PRK05329 297 TRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPLDSQ 375 (422)
T ss_pred eeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCcccCC
Confidence 33443 58999999999986554320 124456666654 5666777
Q ss_pred CCCCCCCeEEecccCCCCCCh------HHHHHHHHHHHHHHhC
Q 042564 324 SRTNVPSIWAVGDVTNRMNLT------PVALMEGTCFAKTVFG 360 (498)
Q Consensus 324 ~~t~~~~iya~GD~~~~~~~~------~~A~~~g~~aa~~i~~ 360 (498)
.++..+|+||+|++.+++..+ -+|+..|-.|+++|..
T Consensus 376 g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 376 GGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAE 418 (422)
T ss_pred CCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence 778899999999999986554 3788889899988864
No 83
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.79 E-value=7.6e-18 Score=178.87 Aligned_cols=280 Identities=16% Similarity=0.204 Sum_probs=156.6
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHH-hhhh-cCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGEL-EDAR-SYG 99 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~-~~~~-~~g 99 (498)
..++|+||||||||++||+.|++.|++|+++|+ ....|+.-... -| ......+...+ ...+ .+|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~---------~~i~gl~~~~~--~~---i~~~~~~~~~L~er~p~~~G 447 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG---------LKITLLPFDVH--KP---IKFWHEYKNLLSERMPRGFG 447 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc---------ccccccccccc--cc---cchhhhhccchhhhccccCC
Confidence 357899999999999999999999999999994 11111110000 00 00000001111 0111 021
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC-CC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS-RA 177 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~-~p 177 (498)
-.......++|.. ..++. ....+.. .++.++.+..... .++.++ .....||.|+||||+ .|
T Consensus 448 G~~~yGIp~R~~k------~~l~~----i~~il~~g~~v~~~~gv~lG~-----dit~ed--l~~~gyDAV~IATGA~kp 510 (1028)
T PRK06567 448 GVAEYGITVRWDK------NNLDI----LRLILERNNNFKYYDGVALDF-----NITKEQ--AFDLGFDHIAFCIGAGQP 510 (1028)
T ss_pred cccccCccccchH------HHHHH----HHHHHhcCCceEEECCeEECc-----cCCHHH--HhhcCCCEEEEeCCCCCC
Confidence 1111111133321 11111 1122222 2455554432111 111111 124679999999999 69
Q ss_pred CCCCCCCCCc--ccChHHHhccc--------------cCCCeEEEEcCCHHHHHHHHHHHH-------------------
Q 042564 178 QRAPIPGQEL--AITSDEALSLE--------------ELPKRAVVLGGGYIAVEFASIWRG------------------- 222 (498)
Q Consensus 178 ~~p~i~g~~~--~~~~~~~~~l~--------------~~~~~v~ViG~G~~g~e~a~~l~~------------------- 222 (498)
+.+++||.+. +++..+++... ...++|+|||||.+|+|+|.....
T Consensus 511 r~L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~ 590 (1028)
T PRK06567 511 KVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLT 590 (1028)
T ss_pred CCCCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcc
Confidence 9999999753 55555543211 124799999999999999983221
Q ss_pred --------------------------------CCCcEEEEeeCCCC-CCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 223 --------------------------------MGSTVDLLFRKELP-LRGFDDEMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 223 --------------------------------~g~~V~lv~~~~~~-l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
.|. |++++|...- +|.... -.+.+. ...+.||.++++....+|.
T Consensus 591 ~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~-~~eEv~-~A~eEGV~f~~~~~P~~i~ 667 (1028)
T PRK06567 591 EEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKL-NHEELI-YALALGVDFKENMQPLRIN 667 (1028)
T ss_pred cccHHHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCCCC-CHHHHH-HHHHcCcEEEecCCcEEEE
Confidence 232 8888876532 222100 012222 2346799999999999987
Q ss_pred EeCCe--EEEEEC--------------C-C---------------eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCC
Q 042564 270 KSEEG--VKVITD--------------H-G---------------EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGA 317 (498)
Q Consensus 270 ~~~~~--~~v~~~--------------~-g---------------~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~ 317 (498)
.++++ ..+++. + + .+++||.||+|+|..||+.+. ..
T Consensus 668 ~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~---------~~--- 735 (1028)
T PRK06567 668 VDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD---------ED--- 735 (1028)
T ss_pred ecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc---------cc---
Confidence 65432 212110 1 1 368899999999999999862 00
Q ss_pred eEcCCCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHH
Q 042564 318 VKVDENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358 (498)
Q Consensus 318 i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i 358 (498)
+..+-++.+++|+- .+..|+.+|+.++.+|
T Consensus 736 ---~~s~~~d~~~~f~G--------tvv~A~as~k~~~~~i 765 (1028)
T PRK06567 736 ---KYSYFGDCNPKYSG--------SVVKALASSKEGYDAI 765 (1028)
T ss_pred ---ccccccCCCCcccc--------HHHHHHHHHHhHHHHH
Confidence 11233345556654 6678999999999988
No 84
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.77 E-value=8.6e-18 Score=153.75 Aligned_cols=188 Identities=23% Similarity=0.264 Sum_probs=107.4
Q ss_pred EEECCChhHHHHHHHHHhCCCc-EEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccccc
Q 042564 27 FVIGAGSGGVRAARFSANFGAK-VGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEK 105 (498)
Q Consensus 27 vIIGgG~aGl~aA~~l~~~g~~-V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~~~ 105 (498)
+||||||+||++|.+|.+.|.+ |+|+|+ ...+||.+......++- .. +.... ..++.. ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~---------~~~~Gg~w~~~~~~~~~---~~---~~~~~--~~~~~~--~~ 61 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLER---------NDRPGGVWRRYYSYTRL---HS---PSFFS--SDFGLP--DF 61 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEES---------SSSSTTHHHCH-TTTT----BS---SSCCT--GGSS----CC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeC---------CCCCCCeeEEeCCCCcc---cc---Ccccc--ccccCC--cc
Confidence 7999999999999999999999 999995 45788887543211100 00 00000 000000 00
Q ss_pred cccCHHHHHHH----HHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEeCCCceEEEEcCeEEEcCCC--C
Q 042564 106 IDFDWKKLLQK----KTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQLDGTKLSYSAKHILIATGS--R 176 (498)
Q Consensus 106 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~~~g~~~~~~~d~liiAtG~--~ 176 (498)
..+.+...-.. .....+++.++++.+.++.++++..++ +..+ +.+.+.|+..++ +.+++|+||+|||. .
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~--~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 62 ESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDG--RTIRADRVVLATGHYSH 139 (203)
T ss_dssp CHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS---EEEEEEEEE---SSCS
T ss_pred cccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEec--ceeeeeeEEEeeeccCC
Confidence 01111111000 001123445567777777788866654 3333 445599988887 38889999999994 8
Q ss_pred CCCCCCCC-CC-cccChHHHhcccc-CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 177 AQRAPIPG-QE-LAITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 177 p~~p~i~g-~~-~~~~~~~~~~l~~-~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
|+.|.++| .+ ..+++.++..... ..++|+|||+|.+|++++..|.+.|.+|+++.|++.
T Consensus 140 p~~p~~~g~~~~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 140 PRIPDIPGSAFRPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp B---S-TTGGCSEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCccccccccccceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 99999999 32 3445555444333 368999999999999999999999999999999864
No 85
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.76 E-value=2.8e-18 Score=177.66 Aligned_cols=275 Identities=23% Similarity=0.353 Sum_probs=171.9
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
-++|.|||+|||||+||-+|-+.|+-|+++|+ ...+||.. .||++
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer---------~dr~ggll-------------------------~ygip- 1829 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYER---------SDRVGGLL-------------------------MYGIP- 1829 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEe---------cCCcCcee-------------------------eecCC-
Confidence 46899999999999999999999999999995 55666652 12222
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRAP 181 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~p~ 181 (498)
.....+... +..-+++.+.||+++.++.. ..+ |.. | ...-.+|.+|+|+|++ |+..+
T Consensus 1830 ----nmkldk~vv----------~rrv~ll~~egi~f~tn~ei--gk~---vs~-d--~l~~~~daiv~a~gst~prdlp 1887 (2142)
T KOG0399|consen 1830 ----NMKLDKFVV----------QRRVDLLEQEGIRFVTNTEI--GKH---VSL-D--ELKKENDAIVLATGSTTPRDLP 1887 (2142)
T ss_pred ----ccchhHHHH----------HHHHHHHHhhCceEEeeccc--ccc---ccH-H--HHhhccCeEEEEeCCCCCcCCC
Confidence 222222111 11124556679999886422 111 322 2 1245689999999976 88888
Q ss_pred CCCCCc--ccChH---------------HHhccccCCCeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCC---------
Q 042564 182 IPGQEL--AITSD---------------EALSLEELPKRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKE--------- 234 (498)
Q Consensus 182 i~g~~~--~~~~~---------------~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~--------- 234 (498)
+||-+. +.-.. +...+....|+|+|||||.+|.++...-.++|++ |.-++--+
T Consensus 1888 v~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~ 1967 (2142)
T KOG0399|consen 1888 VPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPD 1967 (2142)
T ss_pred CCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCC
Confidence 998652 11011 1112334578999999999999998777777764 33333222
Q ss_pred CCCCCCCH----HH-HHHHHHHHHhCCCEEEc------------CccEEEE-------EEeCCe-EEE-EEC-CCeEEEc
Q 042564 235 LPLRGFDD----EM-RAVVARNLEGRGINLHP------------RTTIKEL-------IKSEEG-VKV-ITD-HGEEIVA 287 (498)
Q Consensus 235 ~~l~~~~~----~~-~~~l~~~l~~~Gv~i~~------------~~~v~~i-------~~~~~~-~~v-~~~-~g~~i~~ 287 (498)
.++|.++. +. .+...+.+ |-+.++ +..|+.+ ++++.+ ... +.. +.+.++|
T Consensus 1968 npwpqwprvfrvdygh~e~~~~~---g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~ea 2044 (2142)
T KOG0399|consen 1968 NPWPQWPRVFRVDYGHAEAKEHY---GSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEA 2044 (2142)
T ss_pred CCCccCceEEEeecchHHHHHHh---CCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeec
Confidence 12332211 00 01111111 211111 1122221 222222 111 121 2346899
Q ss_pred CEEEEecCCCcCCCCCCcccCCceeCCCCCeEcC-CCCCCCCCCeEEecccCCCCCChHHHHHHHHHHHHHH
Q 042564 288 DVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD-ENSRTNVPSIWAVGDVTNRMNLTPVALMEGTCFAKTV 358 (498)
Q Consensus 288 D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i 358 (498)
|+||+|.|+....... .++.+++.++++.|.+- +.+.|.++.|||+|||..+..+..+|+++||-+|+.+
T Consensus 2045 dlv~lamgf~gpe~~~-~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2045 DLVILAMGFVGPEKSV-IEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred ceeeeeccccCcchhh-hhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHH
Confidence 9999999987665543 57788999988776654 5689999999999999999999999999999999875
No 86
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.75 E-value=3.6e-17 Score=159.96 Aligned_cols=256 Identities=22% Similarity=0.265 Sum_probs=136.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCC-CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFG-AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.||+|+||.||++|+.|..|.+.+ .+++++|+ .+.....-|..+ .++.+. ...+...-..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~------~~~f~Wh~gmll-----------~~~~~q--~~fl~Dlvt~ 62 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLER------RPSFSWHPGMLL-----------PGARMQ--VSFLKDLVTL 62 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-------SS--TTGGG-------------SS-B-S--S-TTSSSSTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEec------CCCCCcCCccCC-----------CCCccc--cccccccCcC
Confidence 489999999999999999999855 89999994 222111112111 010000 0000010000
Q ss_pred cccccccCHHHHHHHHHH------------HHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC------CEEEEEe--CCCc
Q 042564 102 VHEKIDFDWKKLLQKKTD------------EILRLNGIYKRLLSNAGVKLYEGE-GKIVGP------NEVEVTQ--LDGT 160 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~------~~~~v~~--~~g~ 160 (498)
......+.|..++..... ...++..+++....+..-.+..+. +..|+. ..+.|.+ .+|.
T Consensus 63 ~~P~s~~sflnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~ 142 (341)
T PF13434_consen 63 RDPTSPFSFLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGD 142 (341)
T ss_dssp T-TTSTTSHHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-
T ss_pred cCCCCcccHHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCC
Confidence 111123444333322211 113455666666655554355554 444432 1367765 4565
Q ss_pred eEEEEcCeEEEcCCCCCCCCCC----CCCCcccChHHHhcc---ccCCCeEEEEcCCHHHHHHHHHHHHCCC--cEEEEe
Q 042564 161 KLSYSAKHILIATGSRAQRAPI----PGQELAITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRGMGS--TVDLLF 231 (498)
Q Consensus 161 ~~~~~~d~liiAtG~~p~~p~i----~g~~~~~~~~~~~~l---~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv~ 231 (498)
...+.+++||+|||..|.+|.. ++.+.++.+.++... ...+++|+|||||.+|.|++..|.+.+. +|+++.
T Consensus 143 ~~~~~ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~ 222 (341)
T PF13434_consen 143 GETYRARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWIS 222 (341)
T ss_dssp EEEEEESEEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEE
T ss_pred eeEEEeCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEE
Confidence 6799999999999999999853 222445555555432 3356899999999999999999988764 899999
Q ss_pred eCCCCCCC---------CCHHHHHH-------------------------------H-----HHHH-HhCCCEEEcCccE
Q 042564 232 RKELPLRG---------FDDEMRAV-------------------------------V-----ARNL-EGRGINLHPRTTI 265 (498)
Q Consensus 232 ~~~~~l~~---------~~~~~~~~-------------------------------l-----~~~l-~~~Gv~i~~~~~v 265 (498)
|+..+.+. ++++..+. + ++.+ .+..+.++.+++|
T Consensus 223 R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v 302 (341)
T PF13434_consen 223 RSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEV 302 (341)
T ss_dssp SSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEE
T ss_pred CCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEE
Confidence 98865432 23332221 1 1122 2345889999999
Q ss_pred EEEEEeCC-eEEEEECC-----CeEEEcCEEEEecCCC
Q 042564 266 KELIKSEE-GVKVITDH-----GEEIVADVVLFATGRA 297 (498)
Q Consensus 266 ~~i~~~~~-~~~v~~~~-----g~~i~~D~vi~a~G~~ 297 (498)
++++..++ ++.+.+.+ ..++++|.||+|||++
T Consensus 303 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 303 TSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred EEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 99998885 67777653 2368899999999975
No 87
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.75 E-value=9.7e-18 Score=170.03 Aligned_cols=189 Identities=22% Similarity=0.228 Sum_probs=122.0
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCc-EEEEccCCCCCCCCcCCCccccccc---cCc---hhhHHHHHHhHhhHHH
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAK-VGICELPFHPISSEVIGGVGGTCVI---RGC---VPKKILVYGASFGGEL 92 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~-V~lvek~~~~~~~~~~~~~GG~~~~---~g~---~p~~~l~~~~~~~~~~ 92 (498)
+..++||+|||||++|+++|++|++.|.. ++++|| ...+||+|.+ .++ .|+..+
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek---------~~~~Gg~W~~~ry~~l~~~~p~~~~---------- 65 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEK---------RDDVGGTWRYNRYPGLRLDSPKWLL---------- 65 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEc---------cCCcCCcchhccCCceEECCchhee----------
Confidence 34568999999999999999999999998 999996 5678888643 111 121111
Q ss_pred hhhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE--EEEE-eCCEEEEEeCCCceEEEEcCeE
Q 042564 93 EDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE--GKIV-GPNEVEVTQLDGTKLSYSAKHI 169 (498)
Q Consensus 93 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~--~~~i-~~~~~~v~~~~g~~~~~~~d~l 169 (498)
.++.+.+... .....+..+..+. ..+++.+-....+.+.... +... +...+.|+.+++...++.+|.|
T Consensus 66 -~~~~~p~~~~-~~~~~~~~~~~y~-------~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~v 136 (443)
T COG2072 66 -GFPFLPFRWD-EAFAPFAEIKDYI-------KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFV 136 (443)
T ss_pred -ccCCCccCCc-ccCCCcccHHHHH-------HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEE
Confidence 1111111100 0000111111111 1222222222233333332 2222 3357888887765333779999
Q ss_pred EEcCC--CCCCCCCCCCCCc----ccChHHHhcc-ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 170 LIATG--SRAQRAPIPGQEL----AITSDEALSL-EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 170 iiAtG--~~p~~p~i~g~~~----~~~~~~~~~l-~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
|+||| +.|++|.++|.+. ++++.++.+- .-.+|+|+|||+|.+|++++..|.+.|.+|+++.|++..
T Consensus 137 V~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 137 VVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred EEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 99999 7799999999864 4455555443 335799999999999999999999999999999998854
No 88
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.74 E-value=8.6e-17 Score=143.16 Aligned_cols=184 Identities=22% Similarity=0.293 Sum_probs=117.4
Q ss_pred CEEEEEeCCCceEEEEcCeEEEcCCCCCCCCCCCCCC-cc---cChHHHhcc---ccCCCeEEEEcCCHHHHHHHHHHHH
Q 042564 150 NEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQE-LA---ITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRG 222 (498)
Q Consensus 150 ~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i~g~~-~~---~~~~~~~~l---~~~~~~v~ViG~G~~g~e~a~~l~~ 222 (498)
...-+.+.+|. .+.|++|+++||++|..-. .|.+ .+ .+.+....+ ....|.|.|+|.|-+++|++..+.
T Consensus 79 ~ehci~t~~g~--~~ky~kKOG~tg~kPklq~-E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk- 154 (334)
T KOG2755|consen 79 SEHCIHTQNGE--KLKYFKLCLCTGYKPKLQV-EGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK- 154 (334)
T ss_pred ccceEEecCCc--eeeEEEEEEecCCCcceee-cCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh-
Confidence 34445566766 8899999999999997642 2222 21 233332222 234689999999999999998876
Q ss_pred CCCcEEEEeeCCCCCCC-CCHHHHHHHHHHHHhC----CCEE--------EcC-----------------c---------
Q 042564 223 MGSTVDLLFRKELPLRG-FDDEMRAVVARNLEGR----GINL--------HPR-----------------T--------- 263 (498)
Q Consensus 223 ~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~----Gv~i--------~~~-----------------~--------- 263 (498)
+.+|+|....+.+... +++.+.+.+...+... -+.+ +.+ -
T Consensus 155 -~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~ese 233 (334)
T KOG2755|consen 155 -ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESE 233 (334)
T ss_pred -cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhh
Confidence 5678888887776554 6777666655444110 0000 000 0
Q ss_pred ---------cEEEEEEeCCeEEEEEC---CC--eEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCC
Q 042564 264 ---------TIKELIKSEEGVKVITD---HG--EEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVP 329 (498)
Q Consensus 264 ---------~v~~i~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~ 329 (498)
.+..+....+...++.. .+ ..+.+|.+++|+|..||.++ .-...++..++|++.||+.|+|+.|
T Consensus 234 er~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~--~~~~~lq~~edggikvdd~m~tslp 311 (334)
T KOG2755|consen 234 NRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEW--AMNKMLQITEDGGIKVDDAMETSLP 311 (334)
T ss_pred hhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceE--EecChhhhccccCeeehhhcccccc
Confidence 00000000000111111 11 25779999999999999995 3444567778899999999999999
Q ss_pred CeEEecccCCC
Q 042564 330 SIWAVGDVTNR 340 (498)
Q Consensus 330 ~iya~GD~~~~ 340 (498)
++||+||+...
T Consensus 312 dvFa~gDvctt 322 (334)
T KOG2755|consen 312 DVFAAGDVCTT 322 (334)
T ss_pred ceeeecceecc
Confidence 99999999873
No 89
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=4.7e-16 Score=155.42 Aligned_cols=299 Identities=19% Similarity=0.207 Sum_probs=168.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchh---hHHHH-HHhHhhHHHhhhhc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVP---KKILV-YGASFGGELEDARS 97 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p---~~~l~-~~~~~~~~~~~~~~ 97 (498)
...+|+|||||||||++|+.|.+.|++|+++|+ ...+||.|.+.--.. +.++- .-.........+++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr---------~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~d 75 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFER---------TDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSD 75 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEe---------cCCccceEeecCcccccccchhhhhhccCChhhhcCCC
Confidence 356999999999999999999999999999996 677899886542111 11000 00112222223333
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCc----EEEEeEEE--EEeCCEEEEEeCCCc--eEEEEcCeE
Q 042564 98 YGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGV----KLYEGEGK--IVGPNEVEVTQLDGT--KLSYSAKHI 169 (498)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv----~~~~~~~~--~i~~~~~~v~~~~g~--~~~~~~d~l 169 (498)
|.+.-.. ...+... .++.++++.+.+..++ .+-...+. .++.+.|.|...+.. ....-+|.|
T Consensus 76 fpf~~~~------~~~~p~~----~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~V 145 (448)
T KOG1399|consen 76 FPFPERD------PRYFPSH----REVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAV 145 (448)
T ss_pred CCCcccC------cccCCCH----HHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEE
Confidence 3332210 1111111 1223334444444443 22221112 222257888775432 257789999
Q ss_pred EEcCCCC--CCCCCCCCC--Cc----ccChHHHhcccc-CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCC
Q 042564 170 LIATGSR--AQRAPIPGQ--EL----AITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGF 240 (498)
Q Consensus 170 iiAtG~~--p~~p~i~g~--~~----~~~~~~~~~l~~-~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~ 240 (498)
++|||-. |++|.++|. +. ++++.++...+. ..|+|+|||.|.+|+|++..+.....+|++..+ .......
T Consensus 146 vVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~~ 224 (448)
T KOG1399|consen 146 VVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHVE 224 (448)
T ss_pred EEcccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-ccccccc
Confidence 9999965 888988883 22 455566554332 358999999999999999999988888888765 2000000
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKV 320 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~v 320 (498)
.+. . ...++..+. .+..+..++ .+...++....+|.+|+|||+.-...++. ..+ .+.+
T Consensus 225 ~~~-------~-~~~~~~~~~--~i~~~~e~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~--~~~-------~~~~ 282 (448)
T KOG1399|consen 225 PPE-------I-LGENLWQVP--SIKSFTEDG---SVFEKGGPVERVDRIIFCTGYKYKFPFLE--TLG-------LGTV 282 (448)
T ss_pred ccc-------e-eecceEEcc--ccccccCcc---eEEEcCceeEEeeeEEEeeeeEeecceec--cCC-------ceee
Confidence 000 0 011222221 144442222 24455666788999999999988887742 211 1222
Q ss_pred CCCC-----CCCCCCeEEecccCCCC----CChHHHHHHHHHHHHHHhCCC
Q 042564 321 DENS-----RTNVPSIWAVGDVTNRM----NLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 321 d~~~-----~t~~~~iya~GD~~~~~----~~~~~A~~~g~~aa~~i~~~~ 362 (498)
++.. ..-.|..++-|...... ...+....|++.+++.+.|..
T Consensus 283 ~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~ 333 (448)
T KOG1399|consen 283 RDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRL 333 (448)
T ss_pred ccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCC
Confidence 2211 12234444444222111 234566788999999888764
No 90
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.70 E-value=9.1e-17 Score=146.87 Aligned_cols=282 Identities=20% Similarity=0.305 Sum_probs=175.4
Q ss_pred CCccEEEECCChhHHHHHHHHHh-CC-CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN-FG-AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~-~g-~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
.++.|+|||||.+|+.+|..+.+ .| -+|.+||....|+-+|...-+||..- .+....+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~------------------~l~~srr-- 97 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLK------------------SLDSSRR-- 97 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchh------------------hhhhccC--
Confidence 57899999999999999999987 44 49999997666666654444444421 0000000
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
...+ +--.+..++...+..+++..-.|.+++|+ +++||++|||+|..-..
T Consensus 98 ------~~a~----------------------liP~~a~wi~ekv~~f~P~~N~v~t~gg~--eIsYdylviA~Giql~y 147 (446)
T KOG3851|consen 98 ------KQAS----------------------LIPKGATWIKEKVKEFNPDKNTVVTRGGE--EISYDYLVIAMGIQLDY 147 (446)
T ss_pred ------cccc----------------------cccCCcHHHHHHHHhcCCCcCeEEccCCc--EEeeeeEeeeeeceecc
Confidence 0000 00011112222223346666777777876 99999999999988777
Q ss_pred CCCCCCCc---------ccChH-------HHhcccc------CCC-eEEEEcCCHHHHHHHHH-HHHCCC--cEEEEeeC
Q 042564 180 APIPGQEL---------AITSD-------EALSLEE------LPK-RAVVLGGGYIAVEFASI-WRGMGS--TVDLLFRK 233 (498)
Q Consensus 180 p~i~g~~~---------~~~~~-------~~~~l~~------~~~-~v~ViG~G~~g~e~a~~-l~~~g~--~V~lv~~~ 233 (498)
-.|+|+.. .++.. .+.+.+. .|. .+-..|+-.-.+-+++. ++++|. ++.++...
T Consensus 148 ~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~T 227 (446)
T KOG3851|consen 148 GKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNT 227 (446)
T ss_pred chhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEec
Confidence 77777521 11111 1111111 122 22234555555555554 556665 45566554
Q ss_pred CCCCCC-C-CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEE-ECC-Ce--EEEcCEEEEecCCCcCCCCCCccc
Q 042564 234 ELPLRG-F-DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVI-TDH-GE--EIVADVVLFATGRAPNTKRLNLKA 307 (498)
Q Consensus 234 ~~~l~~-~-~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~-~~~-g~--~i~~D~vi~a~G~~p~~~~l~l~~ 307 (498)
. ++. | -+...+.+++..++++|++....++.++..+++....+ +.+ |. +++++++-+.....+... +.+
T Consensus 228 s--l~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~---l~~ 302 (446)
T KOG3851|consen 228 S--LPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEV---LAN 302 (446)
T ss_pred C--ccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhh---hhc
Confidence 3 333 2 35577889999999999999999999987766543332 222 43 578888877666555443 344
Q ss_pred CCceeCCCCCeEcCC-CCCC-CCCCeEEecccCCCCCC--hHHHHHHHHHHHHHHh
Q 042564 308 VGVEVDQTGAVKVDE-NSRT-NVPSIWAVGDVTNRMNL--TPVALMEGTCFAKTVF 359 (498)
Q Consensus 308 ~gi~~~~~g~i~vd~-~~~t-~~~~iya~GD~~~~~~~--~~~A~~~g~~aa~~i~ 359 (498)
+.+ .|+.|++.||. .+|. ..||||+||||.+.|.. +..+..|..++-+|+.
T Consensus 303 s~~-adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 303 SDL-ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred Ccc-cCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHH
Confidence 544 47889999997 5664 89999999999997544 3334567778888864
No 91
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.68 E-value=6e-15 Score=140.40 Aligned_cols=324 Identities=20% Similarity=0.191 Sum_probs=184.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCC-CcEEEEccCCCCCCCCcCCCccccccccCc---hhh-HHHH---HHhHhhHH
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFG-AKVGICELPFHPISSEVIGGVGGTCVIRGC---VPK-KILV---YGASFGGE 91 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek~~~~~~~~~~~~~GG~~~~~g~---~p~-~~l~---~~~~~~~~ 91 (498)
|+..+|+|.||-||+-|+.|+.|...+ .+++.+|+ .+......|..+ .|| +|- |-|. .....+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLer------kp~F~WHpGmll-egstlQv~FlkDLVTl~~PTs~ySF 74 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLER------KPDFSWHPGMLL-EGSTLQVPFLKDLVTLVDPTSPYSF 74 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEec------CCCCCcCCCccc-CCccccccchhhhccccCCCCchHH
Confidence 556799999999999999999999854 78999994 333333334422 121 110 0000 00000111
Q ss_pred HhhhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EE---EEeCCE---EEEEeCCCceEEE
Q 042564 92 LEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GK---IVGPNE---VEVTQLDGTKLSY 164 (498)
Q Consensus 92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~---~i~~~~---~~v~~~~g~~~~~ 164 (498)
++.+...+ +...+-+.+.+.-.+ .++..+.+...... -.+..++ +. .++.+. ..+.+.++. .+
T Consensus 75 LNYL~~h~----RLy~Fl~~e~f~i~R---~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~--~y 144 (436)
T COG3486 75 LNYLHEHG----RLYEFLNYETFHIPR---REYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGT--VY 144 (436)
T ss_pred HHHHHHcc----hHhhhhhhhcccccH---HHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCc--EE
Confidence 11111100 000000000000011 22333333333222 1122222 22 222222 224444554 89
Q ss_pred EcCeEEEcCCCCCCCCC----CCCCCcccChHHHhc-cccC--CCeEEEEcCCHHHHHHHHHHHHC----CCcEEEEeeC
Q 042564 165 SAKHILIATGSRAQRAP----IPGQELAITSDEALS-LEEL--PKRAVVLGGGYIAVEFASIWRGM----GSTVDLLFRK 233 (498)
Q Consensus 165 ~~d~liiAtG~~p~~p~----i~g~~~~~~~~~~~~-l~~~--~~~v~ViG~G~~g~e~a~~l~~~----g~~V~lv~~~ 233 (498)
+++.|||.+|.+|.+|+ +++ +.++.+.++.+ ..++ .++|.|||+|.+|.|+-..|... ..++.|+.|+
T Consensus 145 ~ar~lVlg~G~~P~IP~~f~~l~~-~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~ 223 (436)
T COG3486 145 RARNLVLGVGTQPYIPPCFRSLIG-ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRS 223 (436)
T ss_pred EeeeEEEccCCCcCCChHHhCcCc-cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeecc
Confidence 99999999999999995 333 33555555543 3222 34599999999999998887653 4468899999
Q ss_pred CCCCCC---------CCHHHHHH-----------------------------------HHHHHH--hCCCEEEcCccEEE
Q 042564 234 ELPLRG---------FDDEMRAV-----------------------------------VARNLE--GRGINLHPRTTIKE 267 (498)
Q Consensus 234 ~~~l~~---------~~~~~~~~-----------------------------------l~~~l~--~~Gv~i~~~~~v~~ 267 (498)
..++|. |.|+.... +++.+. +..+.++.+++|..
T Consensus 224 ~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~ 303 (436)
T COG3486 224 SGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQS 303 (436)
T ss_pred CCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceee
Confidence 877653 22222221 111221 34788999999999
Q ss_pred EEEeCCe-EEEEEC---C--CeEEEcCEEEEecCCCcCCC-CCCcccCCceeCCCCCeEcCCCCCCC-----CCCeEEec
Q 042564 268 LIKSEEG-VKVITD---H--GEEIVADVVLFATGRAPNTK-RLNLKAVGVEVDQTGAVKVDENSRTN-----VPSIWAVG 335 (498)
Q Consensus 268 i~~~~~~-~~v~~~---~--g~~i~~D~vi~a~G~~p~~~-~l~l~~~gi~~~~~g~i~vd~~~~t~-----~~~iya~G 335 (498)
++..+++ +.+.+. . .++++.|.||+|||++.... ++..-...+.++++|...|+..++.. .-.||+.|
T Consensus 304 ~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn 383 (436)
T COG3486 304 VEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQN 383 (436)
T ss_pred eecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEec
Confidence 9988876 665542 2 24788999999999986555 43211234677888999999876542 13599999
Q ss_pred ccCCC-----CCChHHHHHHHHHHHHHHhCCC
Q 042564 336 DVTNR-----MNLTPVALMEGTCFAKTVFGGQ 362 (498)
Q Consensus 336 D~~~~-----~~~~~~A~~~g~~aa~~i~~~~ 362 (498)
-+... +.+.-.|.+.+. +++.++|..
T Consensus 384 ~e~htHGig~pdLsl~a~Raa~-I~~~L~g~~ 414 (436)
T COG3486 384 AELHTHGIGAPDLSLGAWRAAV-ILNSLLGRE 414 (436)
T ss_pred ccccccccCCccchHHHHHHHH-HHHHHhCcC
Confidence 77653 555566766665 455566654
No 92
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.67 E-value=2.7e-16 Score=151.47 Aligned_cols=196 Identities=20% Similarity=0.291 Sum_probs=125.7
Q ss_pred CCceEEEEcCeEEEcCCCCCCCCCCC---C---CCcccChHHHhccc----------------cCCCeEEEE---cCCH-
Q 042564 158 DGTKLSYSAKHILIATGSRAQRAPIP---G---QELAITSDEALSLE----------------ELPKRAVVL---GGGY- 211 (498)
Q Consensus 158 ~g~~~~~~~d~liiAtG~~p~~p~i~---g---~~~~~~~~~~~~l~----------------~~~~~v~Vi---G~G~- 211 (498)
+++..++....+|+|||..++.+.-. | ...++|.-++.++. ..||+|+.| |+-.
T Consensus 293 ~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~ 372 (622)
T COG1148 293 EPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDF 372 (622)
T ss_pred CCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCc
Confidence 44556788999999999887765311 1 13355555544422 246888765 5443
Q ss_pred -------H------HHHHHHHHHHC--CCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E
Q 042564 212 -------I------AVEFASIWRGM--GSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V 275 (498)
Q Consensus 212 -------~------g~e~a~~l~~~--g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~ 275 (498)
+ ++.-|+.+++. ..+|++++..-+-+ ....-+.+.+.-++.||.++.+ .+.+|...+++ +
T Consensus 373 ~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRaf---G~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l 448 (622)
T COG1148 373 QVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAF---GKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKL 448 (622)
T ss_pred ccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeecc---CccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCee
Confidence 1 22223333333 45788887754433 3333333434334679999988 66677665554 4
Q ss_pred EEEECC---Ce--EEEcCEEEEecCCCcCCCCCCc-ccCCceeCCCCCeEcC-CCC---CCCCCCeEEecccCCCCCChH
Q 042564 276 KVITDH---GE--EIVADVVLFATGRAPNTKRLNL-KAVGVEVDQTGAVKVD-ENS---RTNVPSIWAVGDVTNRMNLTP 345 (498)
Q Consensus 276 ~v~~~~---g~--~i~~D~vi~a~G~~p~~~~l~l-~~~gi~~~~~g~i~vd-~~~---~t~~~~iya~GD~~~~~~~~~ 345 (498)
.|..+| |+ ++++|+|++++|..|....-.+ +-+|+..+++|++... +.+ +|+.++||.+|-+. +|+-..
T Consensus 449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aq-gPkdI~ 527 (622)
T COG1148 449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQ-GPKDIA 527 (622)
T ss_pred EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeeccc-CCccHH
Confidence 554433 33 6889999999999997664322 4478999999998877 444 57999999999554 477778
Q ss_pred HHHHHHHHHHHHH
Q 042564 346 VALMEGTCFAKTV 358 (498)
Q Consensus 346 ~A~~~g~~aa~~i 358 (498)
.+..||..||...
T Consensus 528 ~siaqa~aAA~kA 540 (622)
T COG1148 528 DSIAQAKAAAAKA 540 (622)
T ss_pred HHHHHhHHHHHHH
Confidence 8888887776543
No 93
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.58 E-value=2.6e-13 Score=135.58 Aligned_cols=254 Identities=17% Similarity=0.241 Sum_probs=139.8
Q ss_pred CccEEEECCChhHHHHHHHHH-hCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSA-NFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWE 101 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~-~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~ 101 (498)
.+.|+||||||||++||.+|. +.|++|+|+|+ ...+||... .|..|
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk---------~p~pgGLvR-~GVaP----------------------- 85 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEK---------LPNPYGLIR-YGVAP----------------------- 85 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEec---------CCCCccEEE-EeCCC-----------------------
Confidence 468999999999999999765 58999999995 445556532 12111
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p~ 181 (498)
+ .. ..+.+...+...+...++++..+. .+.. .++.+ .....||.||+|+|+.+..++
T Consensus 86 -d---h~-----------~~k~v~~~f~~~~~~~~v~f~gnv--~VG~---Dvt~e---eL~~~YDAVIlAtGA~~l~ip 142 (506)
T PTZ00188 86 -D---HI-----------HVKNTYKTFDPVFLSPNYRFFGNV--HVGV---DLKME---ELRNHYNCVIFCCGASEVSIP 142 (506)
T ss_pred -C---Cc-----------cHHHHHHHHHHHHhhCCeEEEeee--EecC---ccCHH---HHHhcCCEEEEEcCCCCCCCC
Confidence 0 01 112222333344445567766321 1111 11111 123479999999998865444
Q ss_pred CC----------CCC------cccChHHHh-------------c----cc--cCCCeEEEEcCCHHHHHHHHHH------
Q 042564 182 IP----------GQE------LAITSDEAL-------------S----LE--ELPKRAVVLGGGYIAVEFASIW------ 220 (498)
Q Consensus 182 i~----------g~~------~~~~~~~~~-------------~----l~--~~~~~v~ViG~G~~g~e~a~~l------ 220 (498)
++ |.+ -.++..++. . +. ...++++|||.|+.++++|..|
T Consensus 143 i~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~ 222 (506)
T PTZ00188 143 IGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDD 222 (506)
T ss_pred cccccceeeeccccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHH
Confidence 11 111 112222211 0 10 1236899999999999999975
Q ss_pred --------------HHCCC-cEEEEeeCCCC--------------CCC----CCH-H-----------------------
Q 042564 221 --------------RGMGS-TVDLLFRKELP--------------LRG----FDD-E----------------------- 243 (498)
Q Consensus 221 --------------~~~g~-~V~lv~~~~~~--------------l~~----~~~-~----------------------- 243 (498)
++.+. +|+++.|.... ++. +++ +
T Consensus 223 L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~ 302 (506)
T PTZ00188 223 LSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEI 302 (506)
T ss_pred hhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhH
Confidence 23233 57777776521 111 000 0
Q ss_pred HHHHHHHHHH----------hCCCEEEcCccEEEEEE-eCCeEEEEEC-----------CCe--EEEcCEEEEecCCCcC
Q 042564 244 MRAVVARNLE----------GRGINLHPRTTIKELIK-SEEGVKVITD-----------HGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 244 ~~~~l~~~l~----------~~Gv~i~~~~~v~~i~~-~~~~~~v~~~-----------~g~--~i~~D~vi~a~G~~p~ 299 (498)
..+.+.+..+ .+-+.+++.....+|.. ++....+.+. .|+ .++||+|+-++|++..
T Consensus 303 ~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~ 382 (506)
T PTZ00188 303 FQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKS 382 (506)
T ss_pred HHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCC
Confidence 1122333221 13456677777777764 2222222222 233 6899999999999876
Q ss_pred CCCCCcccCCceeCCCCCeEcCCCCCC--CCCCeEEecccCCCC
Q 042564 300 TKRLNLKAVGVEVDQTGAVKVDENSRT--NVPSIWAVGDVTNRM 341 (498)
Q Consensus 300 ~~~l~l~~~gi~~~~~g~i~vd~~~~t--~~~~iya~GD~~~~~ 341 (498)
.- . |+.+|. . +.+. ..+. ..|++|++|.+-.+|
T Consensus 383 p~----~--g~pFd~-~-~~n~-~grv~~~~~g~Y~~GWiKrGP 417 (506)
T PTZ00188 383 NF----A--ENLYNQ-S-VQMF-KEDIGQHKFAIFKAGWFDKGP 417 (506)
T ss_pred CC----C--CCCccc-c-CCCC-CCcccCCCCCcEEeeecCcCC
Confidence 52 2 345552 2 2222 1221 379999999998653
No 94
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.51 E-value=7.2e-13 Score=124.54 Aligned_cols=276 Identities=20% Similarity=0.288 Sum_probs=153.9
Q ss_pred CccEEEECCChhHHHHHHHHHh--CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
...|+|||+||||+++|..|.+ .+..|.|+|| .| .++|. -+||.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek------~P---vPFGL-------------------------vRyGV 65 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEK------LP---VPFGL-------------------------VRYGV 65 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeec------CC---cccce-------------------------eeecc
Confidence 3589999999999999999988 5689999994 22 22222 12332
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCC-CCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQR 179 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~-p~~ 179 (498)
.-+. .........+...++.....++-+. .+. ..+.++ +.+-.||.+|||.|+. ++.
T Consensus 66 APDH--------------pEvKnvintFt~~aE~~rfsf~gNv--~vG---~dvsl~---eL~~~ydavvLaYGa~~dR~ 123 (468)
T KOG1800|consen 66 APDH--------------PEVKNVINTFTKTAEHERFSFFGNV--KVG---RDVSLK---ELTDNYDAVVLAYGADGDRR 123 (468)
T ss_pred CCCC--------------cchhhHHHHHHHHhhccceEEEecc--eec---ccccHH---HHhhcccEEEEEecCCCCcc
Confidence 2111 0111111223333333344444321 000 011111 1245799999999976 678
Q ss_pred CCCCCCC--cccChHHHhcccc------------CCCeEEEEcCCHHHHHHHHHHHHC----------------------
Q 042564 180 APIPGQE--LAITSDEALSLEE------------LPKRAVVLGGGYIAVEFASIWRGM---------------------- 223 (498)
Q Consensus 180 p~i~g~~--~~~~~~~~~~l~~------------~~~~v~ViG~G~~g~e~a~~l~~~---------------------- 223 (498)
..|||.+ .+++.+.+..+.. -.++|+|||.|..++++|..|..-
T Consensus 124 L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~ 203 (468)
T KOG1800|consen 124 LDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSN 203 (468)
T ss_pred cCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCC
Confidence 8999975 3566665544321 146999999999999999987432
Q ss_pred CCcEEEEeeCCCC--------------CCC----C--------------------CHHHHHHHHHHHHhC---------C
Q 042564 224 GSTVDLLFRKELP--------------LRG----F--------------------DDEMRAVVARNLEGR---------G 256 (498)
Q Consensus 224 g~~V~lv~~~~~~--------------l~~----~--------------------~~~~~~~l~~~l~~~---------G 256 (498)
=.+|+++.|.... ++. + -+++.+.+.+.+.++ +
T Consensus 204 VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~ 283 (468)
T KOG1800|consen 204 VKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGG 283 (468)
T ss_pred cceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCc
Confidence 1357888776531 110 0 012333333333330 1
Q ss_pred CE---EEcCccEEEEEEeCCe-----EEEE---------ECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeE
Q 042564 257 IN---LHPRTTIKELIKSEEG-----VKVI---------TDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVK 319 (498)
Q Consensus 257 v~---i~~~~~v~~i~~~~~~-----~~v~---------~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~ 319 (498)
.+ +.+-....+|..+.++ +.++ +.+-++++|++++.++|+....-. .|+.+|.+.++.
T Consensus 284 ~k~w~~~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~-----~gipFd~~kgvv 358 (468)
T KOG1800|consen 284 SKQWHLRFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVD-----SGIPFDDKKGVV 358 (468)
T ss_pred cchhHHHHhcCHHHhccCcccccceEEEeeeehhhcccccCceEeeccceeEeeeeecccccC-----CCCCcccccCcc
Confidence 11 1111112222222111 1111 112247899999999998765532 255555544455
Q ss_pred cCCCCCC----CCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 320 VDENSRT----NVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 320 vd~~~~t----~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
-|...+. -.|++|++|-+..+ .+....+++++..+|..|.
T Consensus 359 ~n~~GrV~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~ 403 (468)
T KOG1800|consen 359 PNVNGRVLVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIV 403 (468)
T ss_pred cCCCceEEeeccCCceEEEeeeccCCcceeeehhhhHHHHHHHHH
Confidence 5554443 35999999999985 3455566777777777665
No 95
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.49 E-value=4.1e-13 Score=102.67 Aligned_cols=80 Identities=36% Similarity=0.683 Sum_probs=75.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG 282 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g 282 (498)
+++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+.+.+.+++.||++++++.+.++..+++++.|+++||
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999888766888776
No 96
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.45 E-value=3e-12 Score=122.55 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=62.0
Q ss_pred HHHHCCCcEEEEeeCCCCCCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC-
Q 042564 219 IWRGMGSTVDLLFRKELPLRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG- 295 (498)
Q Consensus 219 ~l~~~g~~V~lv~~~~~~l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G- 295 (498)
.+.++|.+... ....+++|. -...+.+.+.+.+++.||+++++++|.+|..++....+.+++|+++.||.+|+|+|
T Consensus 87 ~~e~~Gi~~~e-~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG 165 (408)
T COG2081 87 WVEGLGIALKE-EDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGG 165 (408)
T ss_pred HHHhcCCeeEE-ccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCC
Confidence 33444544322 223344443 34578899999999999999999999999998878999999998999999999999
Q ss_pred -CCcCC
Q 042564 296 -RAPNT 300 (498)
Q Consensus 296 -~~p~~ 300 (498)
..|.+
T Consensus 166 ~S~P~l 171 (408)
T COG2081 166 KSWPKL 171 (408)
T ss_pred cCCCCC
Confidence 55543
No 97
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.40 E-value=6.2e-12 Score=123.15 Aligned_cols=321 Identities=17% Similarity=0.224 Sum_probs=168.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc----------------C---chhhHHHHHH
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR----------------G---CVPKKILVYG 85 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~----------------g---~~p~~~l~~~ 85 (498)
||+|||+|.|||++|+.|.+. .+|+|+.|..... .+..+.-||...-. | |.+..+....
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~-~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv 86 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE-SSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIV 86 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC-ccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 899999999999999999887 9999999654443 22234456654221 1 6666666666
Q ss_pred hHhhHHHhhhhcCCcccccccc--cCHH--------HHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeE-EE--EEeCC-
Q 042564 86 ASFGGELEDARSYGWEVHEKID--FDWK--------KLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGE-GK--IVGPN- 150 (498)
Q Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~-~~--~i~~~- 150 (498)
.+-...+..+..+|.++++... +.+. .++......-..+...+....++ .+|+++.+. +. .++++
T Consensus 87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~ 166 (518)
T COG0029 87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI 166 (518)
T ss_pred HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence 6667777888888988876432 1111 00000011112333333343443 689999985 33 23444
Q ss_pred E---EEEEeCCCceEEEEcCeEEEcCCCCCCCCCC-------CCC--Ccc----cChHHHhccccCCCeEEEEcCCHHHH
Q 042564 151 E---VEVTQLDGTKLSYSAKHILIATGSRAQRAPI-------PGQ--ELA----ITSDEALSLEELPKRAVVLGGGYIAV 214 (498)
Q Consensus 151 ~---~~v~~~~g~~~~~~~d~liiAtG~~p~~p~i-------~g~--~~~----~~~~~~~~l~~~~~~v~ViG~G~~g~ 214 (498)
. +.+...+++...++++.+|||||.--.+... .|. ... ....|+. +-+..-+++-.+ +--..
T Consensus 167 ~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlE-FvQFHPT~l~~~-~~~~~ 244 (518)
T COG0029 167 GVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLE-FVQFHPTALYIP-QRRAF 244 (518)
T ss_pred eEeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCcc-ceeeccceecCC-CCccc
Confidence 2 2332232235688999999999965433211 111 000 0001110 001111222222 11112
Q ss_pred HHHHHHHHCCCcEEEEeeCCCCCCCC-------CHH-HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEE
Q 042564 215 EFASIWRGMGSTVDLLFRKELPLRGF-------DDE-MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIV 286 (498)
Q Consensus 215 e~a~~l~~~g~~V~lv~~~~~~l~~~-------~~~-~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~ 286 (498)
-+.+.++.-|.. -+-..++++++.+ +.+ ++..+...+++.|-.++++..- +... . + .+.++
T Consensus 245 LiSEAVRGEGA~-L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~V~LD~s~--~~~~--~--~----~~rFP 313 (518)
T COG0029 245 LISEAVRGEGAI-LVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGADVFLDISH--IPGD--F--F----ERRFP 313 (518)
T ss_pred eeehhhhcCccE-EECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCeEEEeccC--CCch--h--h----hhhCc
Confidence 223444444432 2234556666533 233 4455666777766666665221 1100 0 0 01121
Q ss_pred -cCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcCCCCCCCCCCeEEecccCCC-----CCChHHH----HHHHHHHHH
Q 042564 287 -ADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVDENSRTNVPSIWAVGDVTNR-----MNLTPVA----LMEGTCFAK 356 (498)
Q Consensus 287 -~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd~~~~t~~~~iya~GD~~~~-----~~~~~~A----~~~g~~aa~ 356 (498)
........|..|..+.++.... ..+ ..|+|.||.+.||++|++||+|.|+.. ..++... .--|..+|+
T Consensus 314 ~I~~~c~~~GiD~~r~~IPV~Pa-aHY-~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~ 391 (518)
T COG0029 314 TIYAACLKAGIDPTREPIPVVPA-AHY-TMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAE 391 (518)
T ss_pred HHHHHHHHcCCCcccCccCccch-hhe-ecccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHH
Confidence 0112223455555544322111 011 147899999999999999999999863 4455544 445666777
Q ss_pred HHhCCC
Q 042564 357 TVFGGQ 362 (498)
Q Consensus 357 ~i~~~~ 362 (498)
+|.+..
T Consensus 392 ~i~~~~ 397 (518)
T COG0029 392 DIAGRL 397 (518)
T ss_pred Hhhccc
Confidence 787653
No 98
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.40 E-value=4e-12 Score=133.42 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=77.5
Q ss_pred cccCCCeEEEEcCCHHHHHHHHH-------HHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 197 LEELPKRAVVLGGGYIAVEFASI-------WRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 197 l~~~~~~v~ViG~G~~g~e~a~~-------l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
+...|+.++++|++.++++++.. +.+++.+|++.......+..+...+...+.+.+++.|+++++++.+.++.
T Consensus 156 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~ 235 (557)
T PRK07843 156 YGKVPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY 235 (557)
T ss_pred cccccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE
Confidence 44567889999999999998865 56667777776554444444677888889999999999999999999998
Q ss_pred EeCCe-EEEEEC-CCe--EEEcC-EEEEecC-CCcCCCC
Q 042564 270 KSEEG-VKVITD-HGE--EIVAD-VVLFATG-RAPNTKR 302 (498)
Q Consensus 270 ~~~~~-~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~ 302 (498)
.+++. ..|... +++ .+.++ .||+|+| +.+|.++
T Consensus 236 ~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m 274 (557)
T PRK07843 236 VEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQM 274 (557)
T ss_pred EeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHH
Confidence 76554 233332 443 47785 5888775 6666654
No 99
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.36 E-value=4.8e-10 Score=111.06 Aligned_cols=150 Identities=19% Similarity=0.189 Sum_probs=96.7
Q ss_pred EEcCCHHHHHHHHHH-HHCCCcEEEEeeCCCCCCC-CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEE-EEECCC
Q 042564 206 VLGGGYIAVEFASIW-RGMGSTVDLLFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-VITDHG 282 (498)
Q Consensus 206 ViG~G~~g~e~a~~l-~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-v~~~~g 282 (498)
|+|-+... ++...| ...|+.|.-+-- +-|. ....+.+.+.+.+++.|++++.+.+|.++..+++.+. +.+.++
T Consensus 229 vlG~~~~~-~~~~~L~~~~g~~v~E~pt---lPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g 304 (419)
T TIGR03378 229 CFGLGDGL-ELLRELEQATGLTLCELPT---MPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNH 304 (419)
T ss_pred eeCCCChH-HHHHHHHHHHCCCEEeCCC---CCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCC
Confidence 44554422 222333 345777665532 2233 5678889999999999999999999999987777644 444555
Q ss_pred --eEEEcCEEEEecCCC-cCCCCCC---ccc--CCcee---------------C----CCCCeEcCCCCCC-----CCCC
Q 042564 283 --EEIVADVVLFATGRA-PNTKRLN---LKA--VGVEV---------------D----QTGAVKVDENSRT-----NVPS 330 (498)
Q Consensus 283 --~~i~~D~vi~a~G~~-p~~~~l~---l~~--~gi~~---------------~----~~g~i~vd~~~~t-----~~~~ 330 (498)
..+.+|.+|+|+|.. +.--.-. +.+ .++++ + -.-+|.+|+.+|. ..+|
T Consensus 305 ~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~N 384 (419)
T TIGR03378 305 RDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIEN 384 (419)
T ss_pred ccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCccccc
Confidence 479999999999987 3211000 000 01111 0 0124889998883 3899
Q ss_pred eEEecccCCCCCCh------HHHHHHHHHHHHHHh
Q 042564 331 IWAVGDVTNRMNLT------PVALMEGTCFAKTVF 359 (498)
Q Consensus 331 iya~GD~~~~~~~~------~~A~~~g~~aa~~i~ 359 (498)
+||+|-+.++.... -+|+..|-.||++|.
T Consensus 385 l~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 385 LYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred ceEechhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence 99999999863322 378888888888763
No 100
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.36 E-value=9.5e-12 Score=131.27 Aligned_cols=247 Identities=22% Similarity=0.294 Sum_probs=138.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---chhhHHHHHHhHhhHHHhhhh
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---CVPKKILVYGASFGGELEDAR 96 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---~~p~~~l~~~~~~~~~~~~~~ 96 (498)
.+.++||+|||+|++|+++|+.+++.|.+|+|||| ....||+|...+ |+|.+.+...+..........
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek---------~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~ 79 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEK---------DPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPR 79 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEec---------CCCCCccccccCceeecCccHHhhhccccchHHHHH
Confidence 34578999999999999999999999999999995 345788887765 788776655443322222111
Q ss_pred cCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEEEeCCEEEEEeCCCceEEEEcCeEEEcCCC
Q 042564 97 SYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 97 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~ 175 (498)
.+-.... ....+. +++. ..++.....++ .+.. .++++.... . .. .+.....-.++|.
T Consensus 80 ~~~~~~~-~~~~~~-~l~~---~~~~~s~~~~~-wl~~~~gv~~~~~~------~-----~~-----d~~~~~~~~~~gg 137 (581)
T PRK06134 80 TYLRHEL-GARYDA-ARID---AFLEAGPHMVA-FFERHTALRFADGN------A-----IP-----DYHGDTPGAATGG 137 (581)
T ss_pred HHHHHHh-CcCCCH-HHHH---HHHhccHHHHH-HHHhcCCceeeecC------C-----CC-----CCCCCCCCCCCCC
Confidence 1100000 001111 1111 11111112222 2222 345542210 0 00 0111122234555
Q ss_pred CCCCC-CCCCCCcccChHHHhccccCCCeEEEEcCCHHH-HHHHHHHHHCCCcEEEEeeCCCCCC--------------C
Q 042564 176 RAQRA-PIPGQELAITSDEALSLEELPKRAVVLGGGYIA-VEFASIWRGMGSTVDLLFRKELPLR--------------G 239 (498)
Q Consensus 176 ~p~~p-~i~g~~~~~~~~~~~~l~~~~~~v~ViG~G~~g-~e~a~~l~~~g~~V~lv~~~~~~l~--------------~ 239 (498)
++..| ++++.+.. +++..+...+.++.++|++.++ .+++..+...+..+.+..+..++++ .
T Consensus 138 r~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (581)
T PRK06134 138 RSLIAAPFDGRELG---ALLERLRKPLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLV 214 (581)
T ss_pred CeeccCCCChhhhh---HHHHHhccccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCccc
Confidence 55444 34443222 3444555566677888888765 6777777666555443322111111 1
Q ss_pred CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEE--CCCe-EEEc-CEEEEecCCCcCC
Q 042564 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVIT--DHGE-EIVA-DVVLFATGRAPNT 300 (498)
Q Consensus 240 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~--~~g~-~i~~-D~vi~a~G~~p~~ 300 (498)
....+.+.+.+.+++.|+++++++.++++..+++. ..|.. .++. .+.+ +.||+|+|-..+.
T Consensus 215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 215 NGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccC
Confidence 23557788888899999999999999998766544 23333 3443 5788 9999999876653
No 101
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.35 E-value=1.2e-11 Score=130.64 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=82.6
Q ss_pred hHHHhccccCCCeEEEEcCCH--HHHHHHHHHHHCCCcEEEEeeCCCCCCCC--------------CHHHHHHHHHHHHh
Q 042564 191 SDEALSLEELPKRAVVLGGGY--IAVEFASIWRGMGSTVDLLFRKELPLRGF--------------DDEMRAVVARNLEG 254 (498)
Q Consensus 191 ~~~~~~l~~~~~~v~ViG~G~--~g~e~a~~l~~~g~~V~lv~~~~~~l~~~--------------~~~~~~~l~~~l~~ 254 (498)
.+++.++...++++.|+|+++ ++.+++..+...+.+++++.+...+++.+ ...+...+.+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~ 226 (574)
T PRK12842 147 GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD 226 (574)
T ss_pred hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh
Confidence 456667777889999999998 89999999999998887765544443322 24577778888889
Q ss_pred CCCEEEcCccEEEEEEeCCe-EEEEE--CCCe-EEEcC-EEEEecCCCcCCC
Q 042564 255 RGINLHPRTTIKELIKSEEG-VKVIT--DHGE-EIVAD-VVLFATGRAPNTK 301 (498)
Q Consensus 255 ~Gv~i~~~~~v~~i~~~~~~-~~v~~--~~g~-~i~~D-~vi~a~G~~p~~~ 301 (498)
.|+++++++.|+++..+++. ..|.. .+++ .+.++ .||+|+|..++..
T Consensus 227 ~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~ 278 (574)
T PRK12842 227 LGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSHDL 278 (574)
T ss_pred CCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchH
Confidence 99999999999999876654 23433 3343 46776 7999999877543
No 102
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.34 E-value=3e-11 Score=133.55 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=44.0
Q ss_pred cCCCcCCCCCCcccCCcee---CCCCCeEcCCCCCCCCCCeEEecccCCC-CCChHHHHHHHHHHHHHHh
Q 042564 294 TGRAPNTKRLNLKAVGVEV---DQTGAVKVDENSRTNVPSIWAVGDVTNR-MNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 294 ~G~~p~~~~l~l~~~gi~~---~~~g~i~vd~~~~t~~~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~ 359 (498)
.|..|..+.+......+.. ...|+|.||.+++|++|++||+|||++. ......|.-.|++|+.++.
T Consensus 337 ~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~ 406 (897)
T PRK13800 337 RGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAA 406 (897)
T ss_pred cCCCcccccceecccccccccCCCcceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHH
Confidence 3677776654321110100 1247899999999999999999999864 3333457777888887764
No 103
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.34 E-value=1.8e-11 Score=128.13 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=31.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.++||+|||+|.||++||+.+++.|.+|+|+||
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK 47 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTK 47 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEc
Confidence 4568999999999999999999999999999996
No 104
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.32 E-value=4.5e-10 Score=110.49 Aligned_cols=199 Identities=20% Similarity=0.218 Sum_probs=104.5
Q ss_pred CccEEEECCChhHHHHHHHHHh---CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHH-------HH-hHhhHH
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN---FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILV-------YG-ASFGGE 91 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~-------~~-~~~~~~ 91 (498)
+++|+|||||++|+.+|.+|.+ ....|.|+|+ ....|+...+..--|...+- .. ...+..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~---------~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~ 71 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEP---------RPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQD 71 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEecc---------ccccCCCccCCCCCchhhhccccccccccCCCCchH
Confidence 3689999999999999999988 2224999995 44445444443333322221 11 110111
Q ss_pred H-hhhhcCCcccc--cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCC---cEEEEeEEEEE--e--CCEEEEEeCCCce
Q 042564 92 L-EDARSYGWEVH--EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAG---VKLYEGEGKIV--G--PNEVEVTQLDGTK 161 (498)
Q Consensus 92 ~-~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---v~~~~~~~~~i--~--~~~~~v~~~~g~~ 161 (498)
. +-+...+.... .....| ...+..+.-+-+.+.+.+..++.+.. +.++..++..+ + .....+...+|.
T Consensus 72 F~~WL~~~~~~~~d~~~~~~d-~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~- 149 (474)
T COG4529 72 FVRWLQKQLQRYRDPEDINHD-GQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGP- 149 (474)
T ss_pred HHHHHHhcccccCChhhcCCc-cccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCC-
Confidence 1 11111100000 000001 01111011111122222333444333 67777665543 2 234566667776
Q ss_pred EEEEcCeEEEcCCCCCCCCCC-----CCCC-c---ccChHHHhccccCCCeEEEEcCCHHHHHHHHHHHHCCC--cEEEE
Q 042564 162 LSYSAKHILIATGSRAQRAPI-----PGQE-L---AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGS--TVDLL 230 (498)
Q Consensus 162 ~~~~~d~liiAtG~~p~~p~i-----~g~~-~---~~~~~~~~~l~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv 230 (498)
...+|-+|+|||..+-.++. ++.. + .+.+.....++. ..+|+|+|+|.+.++....|++.|. +||.+
T Consensus 150 -~~~ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~-~drVli~GsgLt~~D~v~~l~~~gh~g~It~i 227 (474)
T COG4529 150 -SEIADIIVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDA-DDRVLIVGSGLTSIDQVLVLRRRGHKGPITAI 227 (474)
T ss_pred -eeeeeEEEEeccCCCCCcchhhhccCCCcceeccccCCcccccccC-CCceEEecCCchhHHHHHHHhccCCccceEEE
Confidence 77899999999966444332 2221 1 122222222222 3459999999999999999998765 68999
Q ss_pred eeCC
Q 042564 231 FRKE 234 (498)
Q Consensus 231 ~~~~ 234 (498)
.|..
T Consensus 228 SRrG 231 (474)
T COG4529 228 SRRG 231 (474)
T ss_pred eccc
Confidence 8876
No 105
>PRK08275 putative oxidoreductase; Provisional
Probab=99.32 E-value=1.1e-11 Score=130.12 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=81.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCcccccc--cc-----------------C-chhh
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCV--IR-----------------G-CVPK 79 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~--~~-----------------g-~~p~ 79 (498)
.++||||||||.||++||+.+++. |.+|+|+||.............||.+. .. + |.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 458999999999999999999986 789999995322100000001111111 00 1 1222
Q ss_pred HHHHHHhHhhHHHhhhhcCCcccccc--cccCHHHHHHHH-----HHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--e-
Q 042564 80 KILVYGASFGGELEDARSYGWEVHEK--IDFDWKKLLQKK-----TDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--G- 148 (498)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~- 148 (498)
.+.....+..+.+..+..+|..+... ..+.+....... ...-..+...+...+++.+++++.++ +..+ +
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~ 167 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDA 167 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC
Confidence 22222333344455556677665421 111111100000 00011233444455566799999886 4433 3
Q ss_pred CCEEE---E-EeCCCceEEEEcCeEEEcCCCCCC
Q 042564 149 PNEVE---V-TQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 149 ~~~~~---v-~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
.+.+. + ...+|....+.++.||+|||....
T Consensus 168 ~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 168 DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred CCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 33322 2 233555557899999999997643
No 106
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.31 E-value=4.1e-11 Score=124.16 Aligned_cols=46 Identities=30% Similarity=0.491 Sum_probs=36.1
Q ss_pred CCCeEcCCCCCCCCCCeEEecccCC-C-C---CC----hHHHHHHHHHHHHHHhC
Q 042564 315 TGAVKVDENSRTNVPSIWAVGDVTN-R-M---NL----TPVALMEGTCFAKTVFG 360 (498)
Q Consensus 315 ~g~i~vd~~~~t~~~~iya~GD~~~-~-~---~~----~~~A~~~g~~aa~~i~~ 360 (498)
.|+|.||.+.||++|++||+|+|+. + . .+ ...|.-.|++|++++..
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999973 2 1 11 24567788899988864
No 107
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.31 E-value=1.4e-11 Score=126.82 Aligned_cols=150 Identities=17% Similarity=0.120 Sum_probs=78.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc-------------------CchhhHHHHH
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR-------------------GCVPKKILVY 84 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~-------------------g~~p~~~l~~ 84 (498)
+||+|||||+||++||+.|++.|.+|+|+||.... ......-||.+... -|-|.-+...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~--~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 79 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK--SNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNV 79 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC--CCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 69999999999999999999999999999963210 00001112222110 0112212112
Q ss_pred HhHhhHHHhhhhcCCcccccccc---cCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEE--eCCEEE-EEeCC
Q 042564 85 GASFGGELEDARSYGWEVHEKID---FDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV--GPNEVE-VTQLD 158 (498)
Q Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i--~~~~~~-v~~~~ 158 (498)
..+....+..+..+|..+..... ..+..........-..+...+...+++.+++++.+.+..+ +.+.+. +.. +
T Consensus 80 ~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~ 158 (466)
T PRK08401 80 ISKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-C
Confidence 22223333444455655432100 0010000000011123344455556667999887765544 333432 333 4
Q ss_pred CceEEEEcCeEEEcCCCCCC
Q 042564 159 GTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 159 g~~~~~~~d~liiAtG~~p~ 178 (498)
+. .+.++.||+|||+...
T Consensus 159 g~--~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 159 GE--LLKFDATVIATGGFSG 176 (466)
T ss_pred CE--EEEeCeEEECCCcCcC
Confidence 43 6899999999997654
No 108
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.31 E-value=3.8e-11 Score=126.00 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=36.8
Q ss_pred CCCeEcCCCCCCCCCCeEEecccCCCC--------CChHHHHHHHHHHHHHHhC
Q 042564 315 TGAVKVDENSRTNVPSIWAVGDVTNRM--------NLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 315 ~g~i~vd~~~~t~~~~iya~GD~~~~~--------~~~~~A~~~g~~aa~~i~~ 360 (498)
.|+|.||.+.||.+|++||+|+++++. .....|+-.|++|++++..
T Consensus 348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~ 401 (543)
T PRK06263 348 MGGIRINEDCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAK 401 (543)
T ss_pred cCCEEECCCCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHH
Confidence 478999999999999999999997531 1123677889999999864
No 109
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.29 E-value=4.7e-11 Score=126.39 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=36.9
Q ss_pred CeEcC-------------CCCCCCCCCeEEecccCC--CCCChHHHHHHHHHHHHHHh
Q 042564 317 AVKVD-------------ENSRTNVPSIWAVGDVTN--RMNLTPVALMEGTCFAKTVF 359 (498)
Q Consensus 317 ~i~vd-------------~~~~t~~~~iya~GD~~~--~~~~~~~A~~~g~~aa~~i~ 359 (498)
+|.|| ++++|++|++||+|||++ ...+...+..+|++++.++.
T Consensus 371 Gi~vd~~~~~~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~ 428 (608)
T PRK06854 371 GYWVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAV 428 (608)
T ss_pred EEEecCcccccccccccccccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHH
Confidence 48899 899999999999999975 35677788889999998875
No 110
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.29 E-value=1.3e-10 Score=122.59 Aligned_cols=156 Identities=18% Similarity=0.281 Sum_probs=80.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCcccccccc-------------------CchhhH
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIR-------------------GCVPKK 80 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~-------------------g~~p~~ 80 (498)
.++||+|||||.||++||+.+++. |.+|+|+||.... .......-||.|... -|.|..
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~-~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM-RSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC-CCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 358999999999999999999986 5799999963211 111111123333111 122333
Q ss_pred HHHHHhHhhHHHhhhhcCCcccccccc--cCHHH--------HHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeE-EEE-E
Q 042564 81 ILVYGASFGGELEDARSYGWEVHEKID--FDWKK--------LLQKKTDEILRLNGIYKRLLSN-AGVKLYEGE-GKI-V 147 (498)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~-~~~-i 147 (498)
+.....+....+..+..+|+++..... +.... ........-..+...+...+.+ .+++++.++ +.. +
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 161 (582)
T PRK09231 82 VEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence 333333444445555667776642111 00000 0000000001122222222333 478888775 332 2
Q ss_pred -eCCEEE----EEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 148 -GPNEVE----VTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 148 -~~~~~~----v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
+++.+. +...+|....+.++.||+|||....
T Consensus 162 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 162 VDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred EeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 344433 2335665668999999999996543
No 111
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.25 E-value=3.6e-10 Score=118.26 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=36.6
Q ss_pred CCCeEcCCCCCCCCCCeEEecccCC-C-C-------CChHHHHHHHHHHHHHHhC
Q 042564 315 TGAVKVDENSRTNVPSIWAVGDVTN-R-M-------NLTPVALMEGTCFAKTVFG 360 (498)
Q Consensus 315 ~g~i~vd~~~~t~~~~iya~GD~~~-~-~-------~~~~~A~~~g~~aa~~i~~ 360 (498)
.|+|.||.+.+|++|++||+|+|+. + . .....|.-.|++|++++..
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999973 2 1 1234577789999998864
No 112
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.25 E-value=1.9e-10 Score=119.47 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=29.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||||||+|.||++||+++++ |.+|+||||
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK 33 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITK 33 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEec
Confidence 5799999999999999999976 899999996
No 113
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.24 E-value=1.5e-10 Score=121.70 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=82.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhC--CCcEEEEccCCCCCCCCcCCCccccccccC-------------------chhhH
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSEVIGGVGGTCVIRG-------------------CVPKK 80 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek~~~~~~~~~~~~~GG~~~~~g-------------------~~p~~ 80 (498)
.++||+|||||.||++||+.+++. |.+|+|+||....-. .....-||.|...+ |.|..
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~-~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~l 80 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS-HTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDV 80 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC-CchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHH
Confidence 358999999999999999999986 689999996322111 11112244442211 23333
Q ss_pred HHHHHhHhhHHHhhhhcCCcccccccc--cCHHH--------HHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeE-EEE-E
Q 042564 81 ILVYGASFGGELEDARSYGWEVHEKID--FDWKK--------LLQKKTDEILRLNGIYKRLLSN-AGVKLYEGE-GKI-V 147 (498)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~-~~~-i 147 (498)
+.....+....+..+..+|+++..... +.... ........-..+...+...+.+ .+|.++.++ +.. +
T Consensus 81 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 160 (580)
T TIGR01176 81 VEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLL 160 (580)
T ss_pred HHHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEE
Confidence 333333444455556667766542111 00000 0000000011222223333333 478888765 332 2
Q ss_pred -eCCEEE----EEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 148 -GPNEVE----VTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 148 -~~~~~~----v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
+.+.+. +...+|....+.++.||+|||....
T Consensus 161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 161 VDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred eeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 344432 2334666668999999999996543
No 114
>PLN02815 L-aspartate oxidase
Probab=99.24 E-value=7.9e-11 Score=123.65 Aligned_cols=35 Identities=37% Similarity=0.561 Sum_probs=31.5
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+.++||||||+|.||++||+.+++.| +|+|+||
T Consensus 25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK 59 (594)
T PLN02815 25 ESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITK 59 (594)
T ss_pred CcccccCEEEECccHHHHHHHHHHhhCC-CEEEEEC
Confidence 3345689999999999999999999999 9999996
No 115
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=1.6e-10 Score=122.86 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=31.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||+|||||.||++||+.|++.|.+|+|+||
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK 66 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCY 66 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence 368999999999999999999999999999995
No 116
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=1.1e-10 Score=123.21 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=30.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhC--CCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF--GAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek 54 (498)
.++||||||||.||++||++|++. |.+|+|+||
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK 36 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAK 36 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEec
Confidence 358999999999999999999986 589999996
No 117
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.22 E-value=8.6e-11 Score=119.64 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=29.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..++||||||+|.||++||+.++ .|.+|+||||
T Consensus 2 ~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK 34 (433)
T PRK06175 2 NLYADVLIVGSGVAGLYSALNLR-KDLKILMVSK 34 (433)
T ss_pred CccccEEEECchHHHHHHHHHhc-cCCCEEEEec
Confidence 35689999999999999999985 6999999996
No 118
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=6.5e-11 Score=125.06 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=30.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCC---CcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFG---AKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g---~~V~lvek 54 (498)
.++||+|||||.||++||+.+++.| .+|+|+||
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK 39 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSK 39 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEc
Confidence 4589999999999999999999998 89999996
No 119
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.21 E-value=4.3e-10 Score=119.21 Aligned_cols=155 Identities=16% Similarity=0.160 Sum_probs=84.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc---------------------CchhhH
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR---------------------GCVPKK 80 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~---------------------g~~p~~ 80 (498)
.++||||||||.||++||+++++.|.+|+||||.... ........||.+... -|.|.-
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~-~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~l 127 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT-RSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 127 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC-CCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 4689999999999999999999999999999963211 111111123322111 123333
Q ss_pred HHHHHhHhhHHHhhhhcCCcccccccc--cCHHHHHH------------H----HHHHHHHHhHHHHHHHHhCCcEEEEe
Q 042564 81 ILVYGASFGGELEDARSYGWEVHEKID--FDWKKLLQ------------K----KTDEILRLNGIYKRLLSNAGVKLYEG 142 (498)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~------------~----~~~~~~~~~~~~~~~~~~~gv~~~~~ 142 (498)
+.....+....+..+..+|+++..... +.....-. + .+..-..+...+.....+.+|+++.+
T Consensus 128 v~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 207 (635)
T PLN00128 128 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVE 207 (635)
T ss_pred HHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 333444445555666677776643111 00000000 0 00001122233334444568999887
Q ss_pred E-EEE-E-e-CCEEE---E-EeCCCceEEEEcCeEEEcCCCCC
Q 042564 143 E-GKI-V-G-PNEVE---V-TQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 143 ~-~~~-i-~-~~~~~---v-~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+ +.. + + .+.+. + ...+|+...+.++.||+|||.-.
T Consensus 208 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 208 YFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred eEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 6 333 3 3 33322 2 22356667889999999999653
No 120
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=5e-10 Score=118.33 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=82.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---------------------chhh
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---------------------CVPK 79 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---------------------~~p~ 79 (498)
..++||+|||||.||++||++|++. .+|+|+||.... ........||.+...+ |-|.
T Consensus 3 ~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~-~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~ 80 (583)
T PRK08205 3 QHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPT-RSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQD 80 (583)
T ss_pred ceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCC-CCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHH
Confidence 3468999999999999999999986 999999963211 1111112334332211 1111
Q ss_pred HHHHHHhHhhHHHhhhhcCCcccccccccCH-----------------HHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEe
Q 042564 80 KILVYGASFGGELEDARSYGWEVHEKIDFDW-----------------KKLLQKKTDEILRLNGIYKRLLSNAGVKLYEG 142 (498)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 142 (498)
.+.....+....+..+..+|+++.....-.+ ..........-..+...+...+.+.+|+++.+
T Consensus 81 ~v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~ 160 (583)
T PRK08205 81 AAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVEFFNE 160 (583)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCEEEeC
Confidence 1122222334445556667776642111000 00000000001223344455556679999988
Q ss_pred E-EEE-E-eC----CEE---EE-EeCCCceEEEEcCeEEEcCCCCC
Q 042564 143 E-GKI-V-GP----NEV---EV-TQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 143 ~-~~~-i-~~----~~~---~v-~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+ +.. + +. +.+ .+ ...+++...+.++.||+|||...
T Consensus 161 ~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 161 FYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred CEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 6 333 2 33 332 22 22455555789999999999765
No 121
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.20 E-value=9.7e-10 Score=113.24 Aligned_cols=136 Identities=24% Similarity=0.320 Sum_probs=73.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhh-------
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDAR------- 96 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~------- 96 (498)
|||+|||||+||+.+|..+++.|.+|+|+|+ ....+|.| +|.|+..-.....+.+.+..+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~---------~~~~~g~~---~c~ps~gG~a~g~l~rEidaLGG~~~~~~ 68 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTL---------NLDTIGKC---SCNPAIGGPAKGILVKEIDALGGLMGKAA 68 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEec---------ccccccCC---CccccccccccchhhhhhhcccchHHHHH
Confidence 7999999999999999999999999999994 11222222 2333221111111111111100
Q ss_pred ---cCCcccc---cccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEE--e-C-CEEEEEeCCCceEEEE
Q 042564 97 ---SYGWEVH---EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIV--G-P-NEVEVTQLDGTKLSYS 165 (498)
Q Consensus 97 ---~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i--~-~-~~~~v~~~~g~~~~~~ 165 (498)
...+... ..+.+ |. .+..-.-..+...+...+.+. +++++.+.+..+ + . ..+.|.+.+|. .+.
T Consensus 69 d~~~i~~r~ln~skgpAV-~~---~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~--~I~ 142 (617)
T TIGR00136 69 DKAGLQFRVLNSSKGPAV-RA---TRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGL--KFR 142 (617)
T ss_pred HhhceeheecccCCCCcc-cc---cHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCC--EEE
Confidence 0000000 00110 00 010111123344455555555 889988886654 2 2 23456666765 899
Q ss_pred cCeEEEcCCCCC
Q 042564 166 AKHILIATGSRA 177 (498)
Q Consensus 166 ~d~liiAtG~~p 177 (498)
++.||+|||...
T Consensus 143 Ad~VILATGtfL 154 (617)
T TIGR00136 143 AKAVIITTGTFL 154 (617)
T ss_pred CCEEEEccCccc
Confidence 999999999754
No 122
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=1.4e-10 Score=121.98 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||||||||.||++||+.+++.|.+|+|+||
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK 36 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISK 36 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEc
Confidence 358999999999999999999999999999996
No 123
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.19 E-value=1.8e-10 Score=115.18 Aligned_cols=85 Identities=22% Similarity=0.356 Sum_probs=57.9
Q ss_pred HHHHHHHHCCCcEEEEeeCCCCCCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEE
Q 042564 215 EFASIWRGMGSTVDLLFRKELPLRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVL 291 (498)
Q Consensus 215 e~a~~l~~~g~~V~lv~~~~~~l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi 291 (498)
++...+.++|.... .+...+++|. -..++.+.+.+.+++.||+++++++|.+|..++++ ..|.+++++.+.+|.||
T Consensus 81 d~~~ff~~~Gv~~~-~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vI 159 (409)
T PF03486_consen 81 DLIAFFEELGVPTK-IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVI 159 (409)
T ss_dssp HHHHHHHHTT--EE-E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEE
T ss_pred HHHHHHHhcCCeEE-EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEE
Confidence 56677888887654 3444555554 34678889999999999999999999999988877 78888777899999999
Q ss_pred EecCCCcCC
Q 042564 292 FATGRAPNT 300 (498)
Q Consensus 292 ~a~G~~p~~ 300 (498)
+|+|-.+..
T Consensus 160 LAtGG~S~p 168 (409)
T PF03486_consen 160 LATGGKSYP 168 (409)
T ss_dssp E----SSSG
T ss_pred EecCCCCcc
Confidence 999965543
No 124
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=3.5e-09 Score=112.11 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||||||||.||++||+.+++.|.+|+||||
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK 43 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITK 43 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEc
Confidence 468999999999999999999999999999996
No 125
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.17 E-value=3.9e-10 Score=117.98 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=29.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.++||||||+|.||++||+++++ |.+|+||||
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK 39 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITK 39 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEc
Confidence 456899999999999999999964 999999996
No 126
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.16 E-value=7.3e-10 Score=117.20 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
||||||||.||++||+.|++.|.+|+|+||
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK 30 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISK 30 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence 899999999999999999999999999996
No 127
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.16 E-value=1e-09 Score=115.44 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHH----hCCCcEEEEccCC
Q 042564 25 DLFVIGAGSGGVRAARFSA----NFGAKVGICELPF 56 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~----~~g~~V~lvek~~ 56 (498)
||||||||.||++||+.++ +.|.+|+|+||..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 8999999999999999998 6799999999643
No 128
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.15 E-value=2.2e-09 Score=99.60 Aligned_cols=144 Identities=16% Similarity=0.181 Sum_probs=89.4
Q ss_pred HHHHHHHHH-CCCcEEEEeeCCCCCCC-CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEECCCeE--EEcC
Q 042564 214 VEFASIWRG-MGSTVDLLFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVITDHGEE--IVAD 288 (498)
Q Consensus 214 ~e~a~~l~~-~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~--i~~D 288 (498)
.++-..|++ .+..+..+-.. -|. +.-.+.+.+...+++.|.-+..+.+|.+.+-.++++ .|.+.+... +.+|
T Consensus 231 ~~~~~aL~~~~~~~l~elPtl---PPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~ 307 (421)
T COG3075 231 DELWDALNDVLGLALFELPTL---PPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRAD 307 (421)
T ss_pred HHHHHHHHHHhCCceeecCCC---CcchhhhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChh
Confidence 344444544 25555444221 222 456678889999999999999999999988777764 455555543 5699
Q ss_pred EEEEecCCCcCCCCCC--------cccCCceeCC-----------------CCCeEcCCCCCC-----CCCCeEEecccC
Q 042564 289 VVLFATGRAPNTKRLN--------LKAVGVEVDQ-----------------TGAVKVDENSRT-----NVPSIWAVGDVT 338 (498)
Q Consensus 289 ~vi~a~G~~p~~~~l~--------l~~~gi~~~~-----------------~g~i~vd~~~~t-----~~~~iya~GD~~ 338 (498)
..++|+|.--...+.. +-.+.+.-++ .-++.+|+.+|- .+.|+||||.+.
T Consensus 308 ~~VLAsGsffskGLvae~d~I~EPIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavl 387 (421)
T COG3075 308 FYVLASGSFFSKGLVAERDKIYEPIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVL 387 (421)
T ss_pred HeeeeccccccccchhhhhhhhcchhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHh
Confidence 9999999532221100 0000110000 013788888875 468999999999
Q ss_pred CCCCCh------HHHHHHHHHHHHHHhC
Q 042564 339 NRMNLT------PVALMEGTCFAKTVFG 360 (498)
Q Consensus 339 ~~~~~~------~~A~~~g~~aa~~i~~ 360 (498)
++.... -+|+-.|..+|+.|+.
T Consensus 388 gGfdpi~egcGsGVaivta~~aa~qi~~ 415 (421)
T COG3075 388 GGFDPIAEGCGSGVAIVTALHAAEQIAE 415 (421)
T ss_pred cCCcHHHhcCCcchHHHHHHHHHHHHHH
Confidence 874322 2577777778887764
No 129
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=8.1e-10 Score=117.43 Aligned_cols=34 Identities=35% Similarity=0.552 Sum_probs=31.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 55 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~ 55 (498)
.++||||||||.||++||+.|++.|.+|+||||.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 3589999999999999999999999999999963
No 130
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=1.6e-09 Score=114.53 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=30.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+||||||+|.||++||+++++.|.+|+||||
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK 34 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSL 34 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEc
Confidence 46999999999999999999999999999995
No 131
>PRK09897 hypothetical protein; Provisional
Probab=99.14 E-value=5.3e-09 Score=107.98 Aligned_cols=185 Identities=15% Similarity=0.067 Sum_probs=93.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCC--CcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHH----------hHhhHH
Q 042564 24 FDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYG----------ASFGGE 91 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g--~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~----------~~~~~~ 91 (498)
++|+||||||+|+++|.+|.+.+ .+|+|+|+ ...+|....+...-|++.++.. ..+..-
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp---------~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~W 72 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQ---------ADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEW 72 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEec---------CCCCCcceeecCCCChHHHHhcccccccCCChHHHHHH
Confidence 58999999999999999998754 59999994 2334433333332222222111 011111
Q ss_pred Hhh-----hhcCCccccc--ccccCHHH-HHHHHHHHHHHHhHHHHHHHHhCC--cEEEEe-EEEEE--eCCEEEEEeCC
Q 042564 92 LED-----ARSYGWEVHE--KIDFDWKK-LLQKKTDEILRLNGIYKRLLSNAG--VKLYEG-EGKIV--GPNEVEVTQLD 158 (498)
Q Consensus 92 ~~~-----~~~~g~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~~-~~~~i--~~~~~~v~~~~ 158 (498)
... ...++..... ...+-... +..+....+. .+...+.+.| +.++.+ .++.+ +.+.+.+.+.+
T Consensus 73 l~~~~~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~----~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~ 148 (534)
T PRK09897 73 LQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFL----RLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ 148 (534)
T ss_pred hhhhhHHHHHhcCCcceeecCCccCCeecchHHHHHHHH----HHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECC
Confidence 100 1111111100 00010000 1111122221 2222334455 566655 45554 34567777644
Q ss_pred CceEEEEcCeEEEcCCCCCCCCCCCCCC-cccChHHHhcccc-CCCeEEEEcCCHHHHHHHHHHHHC
Q 042564 159 GTKLSYSAKHILIATGSRAQRAPIPGQE-LAITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGM 223 (498)
Q Consensus 159 g~~~~~~~d~liiAtG~~p~~p~i~g~~-~~~~~~~~~~l~~-~~~~v~ViG~G~~g~e~a~~l~~~ 223 (498)
+ ...+.+|+||+|||..+..+. ++.. ++.+.+....+.. ...+|+|+|.|.++++.+..|...
T Consensus 149 g-g~~i~aD~VVLAtGh~~p~~~-~~~~~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 149 D-LPSETFDLAVIATGHVWPDEE-EATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred C-CeEEEcCEEEECCCCCCCCCC-hhhccccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 3 137899999999996432111 1111 1112222111111 257999999999999999888755
No 132
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.14 E-value=2.2e-09 Score=114.40 Aligned_cols=154 Identities=20% Similarity=0.179 Sum_probs=85.8
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccc------------------------cccCchh
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTC------------------------VIRGCVP 78 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~------------------------~~~g~~p 78 (498)
++||||||||.||++||+.+++.|.+|+||||...... ......||.. ....|-|
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s-~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D~ 83 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS-HSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCDQ 83 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc-chHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCCH
Confidence 58999999999999999999999999999996322110 0011112211 0123555
Q ss_pred hHHHHHHhHhhHHHhhhhcCCcccccccc-----------------------c---CHHHHHHH-----HHHHHHHHhHH
Q 042564 79 KKILVYGASFGGELEDARSYGWEVHEKID-----------------------F---DWKKLLQK-----KTDEILRLNGI 127 (498)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-----------------------~---~~~~~~~~-----~~~~~~~~~~~ 127 (498)
..+.......+..+..+..+|.++..... + .+.....+ .+.....+...
T Consensus 84 ~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~~ 163 (657)
T PRK08626 84 EVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLYA 163 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHHH
Confidence 54445555555566666666665432110 0 00000000 00001112223
Q ss_pred HHHHHHhCCcEEEEeE-EEEE--eCCE---EEEEe-CCCceEEEEcCeEEEcCCCCC
Q 042564 128 YKRLLSNAGVKLYEGE-GKIV--GPNE---VEVTQ-LDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 128 ~~~~~~~~gv~~~~~~-~~~i--~~~~---~~v~~-~~g~~~~~~~d~liiAtG~~p 177 (498)
+...+.+.|++++.++ +..+ +.+. +.+.. .+|+...+.++.||||||.-.
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4444566799998886 3332 4444 33433 467666788999999999654
No 133
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.13 E-value=1.6e-09 Score=112.75 Aligned_cols=46 Identities=28% Similarity=0.549 Sum_probs=35.2
Q ss_pred CCCeEcCCCCCCCCCCeEEecccCC-C----CCC----hHHHHHHHHHHHHHHhC
Q 042564 315 TGAVKVDENSRTNVPSIWAVGDVTN-R----MNL----TPVALMEGTCFAKTVFG 360 (498)
Q Consensus 315 ~g~i~vd~~~~t~~~~iya~GD~~~-~----~~~----~~~A~~~g~~aa~~i~~ 360 (498)
.|+|.||.+.+|++|++||+|+|+. + ..+ ...|.-.|+++++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999973 2 111 23456678888888764
No 134
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=1.9e-09 Score=113.93 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||||||||.||++||+++++.|.+|+||||
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK 43 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSK 43 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence 358999999999999999999999999999996
No 135
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.05 E-value=1.3e-09 Score=112.65 Aligned_cols=138 Identities=21% Similarity=0.338 Sum_probs=75.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhh-----
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDA----- 95 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~----- 95 (498)
+.+|||||||||+||+.||..+++.|.+|+|||+ . ...+|+ ..|.|+.--+..+.+.+.+..+
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~------~--~d~iG~----m~CnpsiGG~akg~lvrEidalGg~~g 69 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTH------N--LDTIGQ----MSCNPAIGGIAKGHLVREIDALGGEMG 69 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEec------c--cccccc----cCCccccccchhhHHHHHHHhcCCHHH
Confidence 3469999999999999999999999999999994 1 123443 2344432211111111111111
Q ss_pred ---hcCCcccc--c---ccccCHHHHHHHHHHHHHHHhHHHHHHHHhC-CcEEEEeEEEEE--eCCEEE-EEeCCCceEE
Q 042564 96 ---RSYGWEVH--E---KIDFDWKKLLQKKTDEILRLNGIYKRLLSNA-GVKLYEGEGKIV--GPNEVE-VTQLDGTKLS 163 (498)
Q Consensus 96 ---~~~g~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~i--~~~~~~-v~~~~g~~~~ 163 (498)
...+..+. . .+.+ |. .+..-....+...+...+.+. +++++.+++..+ +.+.+. |.+.+|. .
T Consensus 70 ~~~d~~giq~r~ln~skGpAV-~s---~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~--~ 143 (618)
T PRK05192 70 KAIDKTGIQFRMLNTSKGPAV-RA---LRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGL--E 143 (618)
T ss_pred HHHhhccCceeecccCCCCce-eC---cHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCC--E
Confidence 01111100 0 0000 00 000111122334444445544 899888876654 444443 6666665 8
Q ss_pred EEcCeEEEcCCCC
Q 042564 164 YSAKHILIATGSR 176 (498)
Q Consensus 164 ~~~d~liiAtG~~ 176 (498)
+.++.||+|||..
T Consensus 144 I~Ak~VIlATGTF 156 (618)
T PRK05192 144 FRAKAVVLTTGTF 156 (618)
T ss_pred EECCEEEEeeCcc
Confidence 9999999999963
No 136
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.00 E-value=3.1e-09 Score=112.46 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 26 LFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 26 vvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|||||+|.||++||+.+++.|.+|+|+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK 29 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSY 29 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEe
Confidence 69999999999999999999999999996
No 137
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.97 E-value=2.2e-09 Score=108.40 Aligned_cols=146 Identities=19% Similarity=0.222 Sum_probs=77.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCCccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYGWEV 102 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g~~~ 102 (498)
+||+||||||||++||+.|++.|++|+|+|+. ...+..| .+|+|.+.+....-....+. .........
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~---------~~~~~~c--g~~i~~~~l~~~g~~~~~~~~~i~~~~~~~ 69 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERK---------PDNAKPC--GGAIPLCMVDEFALPRDIIDRRVTKMKMIS 69 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecC---------CCCCCCc--cccccHhhHhhccCchhHHHhhhceeEEec
Confidence 58999999999999999999999999999951 1223445 35666544422110001111 011100000
Q ss_pred ccccccCHHHHH---HHH-HHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe-----CCEEEEE--eCC-----CceEEEEc
Q 042564 103 HEKIDFDWKKLL---QKK-TDEILRLNGIYKRLLSNAGVKLYEGEGKIVG-----PNEVEVT--QLD-----GTKLSYSA 166 (498)
Q Consensus 103 ~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~-----~~~~~v~--~~~-----g~~~~~~~ 166 (498)
.....+++.... .+. .-....+...+.....+.|++++.+++..+. ...+.|+ ..+ |+..++++
T Consensus 70 p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a 149 (398)
T TIGR02028 70 PSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEV 149 (398)
T ss_pred CCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEe
Confidence 000111111000 000 0001223334445566679999888765442 1223333 222 44457999
Q ss_pred CeEEEcCCCCCCCC
Q 042564 167 KHILIATGSRAQRA 180 (498)
Q Consensus 167 d~liiAtG~~p~~p 180 (498)
+.||.|+|....+.
T Consensus 150 ~~VIgADG~~S~v~ 163 (398)
T TIGR02028 150 DAVIGADGANSRVA 163 (398)
T ss_pred CEEEECCCcchHHH
Confidence 99999999876544
No 138
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.95 E-value=5.7e-08 Score=98.24 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
...+.+.+.+.+++.|++++++++|.++..+++.+.|.+.+| ++.+|.||+|+|..+.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchH
Confidence 467888888999999999999999999987776677777776 6999999999998753
No 139
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.94 E-value=7.2e-08 Score=101.22 Aligned_cols=69 Identities=30% Similarity=0.420 Sum_probs=55.8
Q ss_pred CCccccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---chhhHHHHHHhHhhH
Q 042564 14 PNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---CVPKKILVYGASFGG 90 (498)
Q Consensus 14 ~~~~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---~~p~~~l~~~~~~~~ 90 (498)
|......+.++||||||+| +|++||+.+++.|.+|+|||| ...+||+|.+.| |+|++.+.......+
T Consensus 7 ~~~~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek---------~~~~GG~~~~~gG~~~~~~~~~~~~~g~~d 76 (564)
T PRK12845 7 PAGTPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEK---------SSYVGGSTARSGGAFWLPASPVLDEAGAGD 76 (564)
T ss_pred CCCCCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEec---------CCCCcCcccCcCCCEecCChHHHHHhCcch
Confidence 3344444557999999999 899999999999999999995 457899999998 999988876655444
Q ss_pred HH
Q 042564 91 EL 92 (498)
Q Consensus 91 ~~ 92 (498)
..
T Consensus 77 s~ 78 (564)
T PRK12845 77 TL 78 (564)
T ss_pred hH
Confidence 33
No 140
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.93 E-value=5.3e-08 Score=96.89 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEE-EEECCCeEEEcCEEEEecCCCcCC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-VITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
...+.+.+.+.+++.|++++.+++|.++..+++.+. |.+.+|+ +.+|.||+|+|.....
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 467888899999999999999999999999988876 9999997 9999999999986544
No 141
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.91 E-value=8.8e-08 Score=97.69 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
.+-+.+.+.+++.|++++.++.|.++..+++.+.....++.++.+|.||.|+|..+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 34455666777889999999999998876665544455677899999999999854
No 142
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.88 E-value=2.6e-07 Score=94.04 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC-----eEEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG-----EEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-----~~i~~D~vi~a~G~~p 298 (498)
..+...+.+.+++.|++++.+++|.++..+++.+.+.+.++ .++.+|.||+|+|...
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 35667778888999999999999999987766665554332 3689999999999764
No 143
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.88 E-value=7.2e-08 Score=95.79 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC-eEEEEECCCeE-EEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEE-GVKVITDHGEE-IVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~-i~~D~vi~a~G~~p~~ 300 (498)
.++...+.+.++++|++++++++|..|+..++ ...+.+.+|++ ++|+.||.|.|.....
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 45778888888999999999999999999888 46677788876 9999999999975543
No 144
>PRK06847 hypothetical protein; Provisional
Probab=98.87 E-value=8.8e-08 Score=96.28 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
+++.+.+.+.+.+.|+++++++.+.++..+++.+.+.+.+|+++.+|.||.|+|..+...
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r 166 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVR 166 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchh
Confidence 467777888888889999999999999887777888888998999999999999887664
No 145
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.86 E-value=7.6e-08 Score=97.36 Aligned_cols=60 Identities=22% Similarity=0.337 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
..+.+.+.+.+++.|+++++++.|+++..+++.+.+++++|+++.+|.||.|.|..+...
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr 172 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAASTLR 172 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCchHH
Confidence 356777778888889999999999999888777888888888899999999999988653
No 146
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.86 E-value=4.3e-08 Score=98.98 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=57.7
Q ss_pred HHHHHHHCCCcEEEEeeCCCCCCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEe
Q 042564 216 FASIWRGMGSTVDLLFRKELPLRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFA 293 (498)
Q Consensus 216 ~a~~l~~~g~~V~lv~~~~~~l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a 293 (498)
+...+.+.|.+++.... .++++. ...++.+.+.+.+++.|+++++++.|.++..+++.+.+.+ +++++.+|.||+|
T Consensus 78 ~~~~~~~~Gv~~~~~~~-g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlA 155 (400)
T TIGR00275 78 LIDFFESLGLELKVEED-GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILA 155 (400)
T ss_pred HHHHHHHcCCeeEEecC-CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEEC
Confidence 33445555655554432 222222 3467888889999999999999999999977666666666 4567999999999
Q ss_pred cCCCc
Q 042564 294 TGRAP 298 (498)
Q Consensus 294 ~G~~p 298 (498)
+|..+
T Consensus 156 tG~~s 160 (400)
T TIGR00275 156 TGGLS 160 (400)
T ss_pred CCCcc
Confidence 99754
No 147
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.85 E-value=1.2e-07 Score=96.07 Aligned_cols=58 Identities=12% Similarity=0.250 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
++.+.+.+.+.+. ++++++++.+.++..+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence 3566667766665 599999999999987777788888889889999999999987765
No 148
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.84 E-value=5.3e-08 Score=94.56 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=83.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC---C--------CCCC-----CHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL---P--------LRGF-----DDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~---~--------l~~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
+|+|||+|+.|+++|..|.+.|.+|+++++.+. + ++.+ +.++...+.+.+++.|+++++ ..|.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999998651 0 1222 357888888889999999998 7899
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
++..+++.+.+.+.+++++.+|.+|+|+|..|+...
T Consensus 81 ~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 81 KVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLG 116 (300)
T ss_pred EEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCC
Confidence 998877667788888888999999999999987654
No 149
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.83 E-value=8.6e-09 Score=104.13 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|||+||||||||++||+.|++.|.+|+|+||
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk 34 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEK 34 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEec
Confidence 369999999999999999999999999999996
No 150
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.82 E-value=2.3e-07 Score=93.23 Aligned_cols=57 Identities=18% Similarity=0.182 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
..+...+.+.+.+.|++++.+++|+++..+++.+.+.+++| .+.+|.||+|+|....
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 45666677777888999999999999988777777888777 6999999999997643
No 151
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.82 E-value=2.3e-07 Score=95.66 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
+..+...+.+.+++.|++++.++.|.++.. ++...|.+.+| ++.+|.||+|+|....
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 456778888889999999999999999975 34466777777 5999999999996543
No 152
>PLN02463 lycopene beta cyclase
Probab=98.81 E-value=6.3e-08 Score=98.52 Aligned_cols=142 Identities=18% Similarity=0.030 Sum_probs=73.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHh-hhhcCCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELE-DARSYGW 100 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~-~~~~~g~ 100 (498)
..|||+||||||||+++|..|++.|.+|+|+|+... ... .+..|+-...+ ....+.+.+. .......
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~------~~~-----p~~~g~w~~~l-~~lgl~~~l~~~w~~~~v 94 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL------SIW-----PNNYGVWVDEF-EALGLLDCLDTTWPGAVV 94 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc------chh-----ccccchHHHHH-HHCCcHHHHHhhCCCcEE
Confidence 458999999999999999999999999999994211 100 01111100000 0001111111 1111000
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
............ .+..-....+...+.+.+.+.|++++.+.+..++ .+.+.|.+++|. .+++|.||.|+|..+.
T Consensus 95 ~~~~~~~~~~~~--~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~--~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 95 YIDDGKKKDLDR--PYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGV--KIQASLVLDATGFSRC 170 (447)
T ss_pred EEeCCCCccccC--cceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCC--EEEcCEEEECcCCCcC
Confidence 000000000000 0000001122233334445678998876666553 445677777765 8999999999997765
Q ss_pred C
Q 042564 179 R 179 (498)
Q Consensus 179 ~ 179 (498)
.
T Consensus 171 l 171 (447)
T PLN02463 171 L 171 (447)
T ss_pred c
Confidence 3
No 153
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.81 E-value=6.5e-08 Score=91.18 Aligned_cols=33 Identities=36% Similarity=0.636 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||+||||||||++||+.|++.|++|+|+|+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk 56 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEec
Confidence 358999999999999999999999999999995
No 154
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.80 E-value=5.2e-07 Score=90.85 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
...+.+.+.+.+++.|++++.+++|.++..+++.+.|.+.++ ++.+|.||+|+|...
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch
Confidence 345677788888889999999999999988777777777666 699999999999753
No 155
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.79 E-value=1.4e-07 Score=95.01 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCC-CEEEcCccEEEEEEeCCeEEEEEC-CCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGRG-INLHPRTTIKELIKSEEGVKVITD-HGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~p~~ 300 (498)
.++.+.+.+.+.+.+ |+++.+++|+.+..+++.+.++++ +|++++||++|-|-|..+..
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~v 164 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAV 164 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHH
Confidence 457788888888775 999999999999998888788888 99999999999999976644
No 156
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.79 E-value=4.2e-08 Score=100.19 Aligned_cols=33 Identities=30% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|||+||||||||+++|+.|++.|++|+|+|+
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr 70 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIER 70 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 469999999999999999999999999999996
No 157
>PRK09126 hypothetical protein; Provisional
Probab=98.78 E-value=3.1e-07 Score=92.94 Aligned_cols=58 Identities=21% Similarity=0.386 Sum_probs=46.6
Q ss_pred HHHHHHHHH-HhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 244 MRAVVARNL-EGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 244 ~~~~l~~~l-~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
+.+.+.+.+ +..|++++++++|.+++.+++.+.|.+++|+++.+|.||.|.|..+...
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr 170 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSATR 170 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchhh
Confidence 344444444 3469999999999999877777888888898999999999999987654
No 158
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.78 E-value=2e-07 Score=94.78 Aligned_cols=58 Identities=16% Similarity=0.270 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+++.|++++.++.+.+++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchh
Confidence 4566677777788999999999999988877888888899889999999999987754
No 159
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.77 E-value=5.4e-08 Score=98.28 Aligned_cols=132 Identities=19% Similarity=0.145 Sum_probs=71.6
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccc---cccCchhhHHHHHHhHhhHHH-hhhhc-CC
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTC---VIRGCVPKKILVYGASFGGEL-EDARS-YG 99 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~---~~~g~~p~~~l~~~~~~~~~~-~~~~~-~g 99 (498)
||+||||||||+++|+.|++.|.+|+|||+ . ...|+.+ .+..+++... +.... ..... +.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~------~---~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 65 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEP------H---PPIPGNHTYGVWDDDLSDLG------LADCVEHVWPDVYE 65 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEcc------C---CCCCCCccccccHhhhhhhc------hhhHHhhcCCCceE
Confidence 799999999999999999999999999995 1 2233332 1111221110 01111 11111 00
Q ss_pred ccccc-ccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEe---CCEEEEEeCCCceEEEEcCeEEEcCCC
Q 042564 100 WEVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVG---PNEVEVTQLDGTKLSYSAKHILIATGS 175 (498)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~---~~~~~v~~~~g~~~~~~~d~liiAtG~ 175 (498)
+.... ....... +..-....+...+.+.+.+.+++++.+++..+. ...+.|...+|. +++++.||.|+|.
T Consensus 66 ~~~~~~~~~~~~~----~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~--~~~a~~VI~A~G~ 139 (388)
T TIGR01790 66 YRFPKQPRKLGTA----YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQ--RIQARLVIDARGF 139 (388)
T ss_pred EecCCcchhcCCc----eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCC--EEEeCEEEECCCC
Confidence 00000 0000000 000001223333444455668888877766553 335666666664 7999999999997
Q ss_pred CC
Q 042564 176 RA 177 (498)
Q Consensus 176 ~p 177 (498)
.+
T Consensus 140 ~s 141 (388)
T TIGR01790 140 GP 141 (388)
T ss_pred ch
Confidence 76
No 160
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.76 E-value=7.8e-08 Score=100.14 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=31.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..++||||||+|.||++||+.+++.|.+|+||||
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK 92 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEK 92 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC
Confidence 3578999999999999999999999999999995
No 161
>PRK10015 oxidoreductase; Provisional
Probab=98.75 E-value=1.5e-07 Score=95.95 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
+-+.+.+.+++.|++++.++.|+++..+++.+.....++.++.+|.||.|.|..+..
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v 166 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSML 166 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcchhh
Confidence 344556667778999999999999887665554333455679999999999986544
No 162
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.74 E-value=4e-08 Score=95.14 Aligned_cols=31 Identities=39% Similarity=0.539 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~ 31 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEK 31 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 6999999999999999999999999999995
No 163
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.74 E-value=2.8e-07 Score=95.86 Aligned_cols=35 Identities=43% Similarity=0.611 Sum_probs=32.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+..++||||||||.||+.||+.+++.|.+|+|+||
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K 37 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSK 37 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEc
Confidence 34578999999999999999999999999999996
No 164
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.73 E-value=1.4e-07 Score=100.30 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=84.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---------------------chhhH
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---------------------CVPKK 80 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---------------------~~p~~ 80 (498)
.++||+|||||.||++||+++++.|.+|+|+||....-. ......||.+...+ |-|.-
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g-~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS-HTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC-CchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 468999999999999999999999999999996322111 11111233221111 12222
Q ss_pred HHHHHhHhhHHHhhhhcCCcccccccc--cC---HHHHH---------HH----HHHHHHHHhHHHHHHHHhCCcEEEEe
Q 042564 81 ILVYGASFGGELEDARSYGWEVHEKID--FD---WKKLL---------QK----KTDEILRLNGIYKRLLSNAGVKLYEG 142 (498)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~---~~~~~---------~~----~~~~~~~~~~~~~~~~~~~gv~~~~~ 142 (498)
+.....+....+..+..+|+++..... +. +.... .+ .+..-..+...+.....+.+++++.+
T Consensus 107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 186 (617)
T PTZ00139 107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEec
Confidence 223333344455566677776643111 00 00000 00 00011233344445455679999988
Q ss_pred E-EEE-E--eCCEEE---E-EeCCCceEEEEcCeEEEcCCCCC
Q 042564 143 E-GKI-V--GPNEVE---V-TQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 143 ~-~~~-i--~~~~~~---v-~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+ +.. + +.+.+. + ...+|+...+.++.||+|||.-.
T Consensus 187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 6 332 3 233322 2 22466667889999999999653
No 165
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.71 E-value=2.1e-07 Score=87.40 Aligned_cols=33 Identities=36% Similarity=0.556 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|||+||||||+|++||+.|++.|.+|+|+||
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk 52 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLER 52 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 368999999999999999999999999999995
No 166
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.70 E-value=1.1e-06 Score=89.59 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEECCCeEEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
..+...+.+.+++.|++++++++|+++..+++.+ .+.+.++ ++.+|.||+|+|...
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 4567778888889999999999999998766664 4555544 689999999999754
No 167
>PRK08013 oxidoreductase; Provisional
Probab=98.70 E-value=6.7e-07 Score=90.63 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+.+. |+++++++++.+++.+++.+.+++.+|+++.+|+||-|.|..+..
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHH
Confidence 4666677777664 899999999999988777888888899999999999999987755
No 168
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.70 E-value=1.9e-08 Score=102.44 Aligned_cols=137 Identities=29% Similarity=0.348 Sum_probs=36.1
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHH-----HHHHhHhhHHHhhhhcCC
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKI-----LVYGASFGGELEDARSYG 99 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~-----l~~~~~~~~~~~~~~~~g 99 (498)
||||||||+||++||+.+++.|.+|+|||+ ...+||.....+..+..- .....-+.+........+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~---------~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~ 71 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEK---------GGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARG 71 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-S---------SSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEEC---------CccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhc
Confidence 899999999999999999999999999995 556777765444221100 111111122222222211
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEE-EE--eCC---EEEEEeCCCceEEEEcCeEEEcC
Q 042564 100 WEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGK-IV--GPN---EVEVTQLDGTKLSYSAKHILIAT 173 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~-~i--~~~---~~~v~~~~g~~~~~~~d~liiAt 173 (498)
.. .......|..-.. -....+...+.+.+.+.|++++.++.. .+ +.+ .+.+...+| ..++.++.+|-||
T Consensus 72 ~~-~~~~~~~~~~~~~---~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaT 146 (428)
T PF12831_consen 72 GY-PQEDRYGWVSNVP---FDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDAT 146 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc-ccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 10 0000111110000 111223344555667789999988733 22 332 233433344 5689999999999
Q ss_pred CC
Q 042564 174 GS 175 (498)
Q Consensus 174 G~ 175 (498)
|.
T Consensus 147 G~ 148 (428)
T PF12831_consen 147 GD 148 (428)
T ss_dssp --
T ss_pred cc
Confidence 93
No 169
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.69 E-value=1.3e-07 Score=97.85 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=32.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|..++||||||+|+||++||++|++.|.+|+||||
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk 35 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEA 35 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 44568999999999999999999999999999995
No 170
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.69 E-value=6.5e-07 Score=90.26 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=47.9
Q ss_pred HHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 244 MRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 244 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
+...+.+.+.+ .|++++.++++.+++.+++++.+++++|+++.+|+||.|.|..+..-
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVR 170 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhH
Confidence 44455555544 47999999999999888888889999999999999999999988764
No 171
>PLN02661 Putative thiazole synthesis
Probab=98.68 E-value=1.3e-07 Score=91.43 Aligned_cols=32 Identities=38% Similarity=0.503 Sum_probs=29.9
Q ss_pred CccEEEECCChhHHHHHHHHHhC-CCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lvek 54 (498)
++||+|||||++|++||+.|++. |++|+|+|+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk 124 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQ 124 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 68999999999999999999974 899999995
No 172
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.68 E-value=8.4e-07 Score=88.17 Aligned_cols=60 Identities=27% Similarity=0.473 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC---CCe--EEEcCEEEEecCCCcCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD---HGE--EIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~~~ 301 (498)
..+.+.+.+.+++.|+++++++.+..+..+.+++.+.+. +|+ ++.+|+||-|-|.++...
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR 175 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVR 175 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHH
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchh
Confidence 357788888888889999999999999988887555443 333 689999999999877553
No 173
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.67 E-value=6e-07 Score=87.61 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=64.2
Q ss_pred HHHCCCcEEEEeeC-CCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCC
Q 042564 220 WRGMGSTVDLLFRK-ELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 220 l~~~g~~V~lv~~~-~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
+...|+...++.-. +++-...-+.+.+.+.+.+++.|++++++++|.+|..+++. ..+.+++|.++.+|.||+|+|+.
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 44556655555433 34444466789999999999999999999999999887764 67788899999999999999987
Q ss_pred cCCC
Q 042564 298 PNTK 301 (498)
Q Consensus 298 p~~~ 301 (498)
....
T Consensus 230 g~dw 233 (486)
T COG2509 230 GRDW 233 (486)
T ss_pred hHHH
Confidence 6554
No 174
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.67 E-value=1.4e-07 Score=96.18 Aligned_cols=30 Identities=47% Similarity=0.556 Sum_probs=27.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
||||||+|.||++||++|++.|.+|+||||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek 30 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEK 30 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEES
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEe
Confidence 899999999999999999999999999995
No 175
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.67 E-value=1.5e-06 Score=87.76 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..+.+.+.+.+.+. ++. +++++|.++..+++.+.+++++|+++.+|.||.|.|..+..
T Consensus 111 ~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (388)
T PRK07494 111 WLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPV 169 (388)
T ss_pred HHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchh
Confidence 34566677777666 465 78999999988888888888888899999999999987654
No 176
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.67 E-value=3.3e-07 Score=94.08 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHCCCcEEEEeeCCCCC---CCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe--CC-e--EEEEEC-C
Q 042564 211 YIAVEFASIWRGMGSTVDLLFRKELPL---RGFDDEMRAVVARNLEGRGINLHPRTTIKELIKS--EE-G--VKVITD-H 281 (498)
Q Consensus 211 ~~g~e~a~~l~~~g~~V~lv~~~~~~l---~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~-~--~~v~~~-~ 281 (498)
.++.|+...+.++=.++.-+.....+. ....+.+...+.+.++++||++++++.|+++..+ ++ + ..|... +
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~ 271 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN 271 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence 578899888876521111111111110 1134678899999999999999999999999874 22 2 334442 2
Q ss_pred C--e---EEEcCEEEEecCCCcCCC
Q 042564 282 G--E---EIVADVVLFATGRAPNTK 301 (498)
Q Consensus 282 g--~---~i~~D~vi~a~G~~p~~~ 301 (498)
| + ..+.|.||+++|.-....
T Consensus 272 ~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 272 GKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred CceeEEEecCCCEEEEeCCcCcccc
Confidence 2 2 245899999999654443
No 177
>PRK07588 hypothetical protein; Provisional
Probab=98.67 E-value=8.5e-07 Score=89.68 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
++.+.+.+.+. .+++++++++|.+++.+++++.+++++|+++.+|.||-|.|.++..-
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccch
Confidence 34444555443 37999999999999888888888999999999999999999877664
No 178
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.66 E-value=1.1e-07 Score=95.84 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|||+||||||||+++|+.|++.|.+|+|+|+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~ 31 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLER 31 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 7999999999999999999999999999995
No 179
>PRK12839 hypothetical protein; Provisional
Probab=98.66 E-value=1.1e-06 Score=92.45 Aligned_cols=58 Identities=33% Similarity=0.484 Sum_probs=47.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---chhhHHHHHHh
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---CVPKKILVYGA 86 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---~~p~~~l~~~~ 86 (498)
++.++||+|||+|.+|++||+.|++.|.+|+|+|| ....||+|.+.+ |+|.+.+....
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek---------~~~~gg~~~~~~g~~~~~~~~~~~~~ 65 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEK---------ASTCGGATAWSGGWMWTPGNSLARAD 65 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEec---------CCCCCccccccCCeeecCCchhhhhc
Confidence 34578999999999999999999999999999995 446789988876 77876654443
No 180
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.66 E-value=6.6e-07 Score=90.88 Aligned_cols=59 Identities=22% Similarity=0.373 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..+.+.+.+.+.+.|+++++++.|+++..+++.+.+++.+|+++.+|.||.|.|..+..
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKL 169 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHH
Confidence 45777788888888999999999999988877888888888899999999999987764
No 181
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.66 E-value=1.3e-08 Score=99.87 Aligned_cols=126 Identities=25% Similarity=0.359 Sum_probs=65.9
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhh------HHHHHH-hHhhHHH-hhhh
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPK------KILVYG-ASFGGEL-EDAR 96 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~------~~l~~~-~~~~~~~-~~~~ 96 (498)
||+|||||+||+.||+.+++.|.+|+|+.. . ... +....|.|+ ..+..- ..+...+ ....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~-----~---~d~----i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD 68 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITH-----N---TDT----IGEMSCNPSIGGIAKGHLVREIDALGGLMGRAAD 68 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES---------GGG----TT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEee-----c---ccc----cccccchhhhccccccchhHHHhhhhhHHHHHHh
Confidence 899999999999999999999999999941 0 122 222333332 222111 0000000 0000
Q ss_pred cCCccc----------cccc--ccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEEE--eCCE-EEEEeCCCc
Q 042564 97 SYGWEV----------HEKI--DFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKIV--GPNE-VEVTQLDGT 160 (498)
Q Consensus 97 ~~g~~~----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~i--~~~~-~~v~~~~g~ 160 (498)
..+..+ ...+ .+|- ..+...+.+.+.+ .+++++.+++..+ +.+. .-|.+.+|.
T Consensus 69 ~~~i~~~~lN~skGpav~a~r~qvDr-----------~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~ 137 (392)
T PF01134_consen 69 ETGIHFRMLNRSKGPAVHALRAQVDR-----------DKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGE 137 (392)
T ss_dssp HHEEEEEEESTTS-GGCTEEEEEE-H-----------HHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSE
T ss_pred HhhhhhhcccccCCCCccchHhhccH-----------HHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCC
Confidence 111100 0001 1221 1233344445555 5899998887755 3343 445667765
Q ss_pred eEEEEcCeEEEcCCC
Q 042564 161 KLSYSAKHILIATGS 175 (498)
Q Consensus 161 ~~~~~~d~liiAtG~ 175 (498)
.+.+|.+|+|||.
T Consensus 138 --~~~a~~vVlaTGt 150 (392)
T PF01134_consen 138 --EIEADAVVLATGT 150 (392)
T ss_dssp --EEEECEEEE-TTT
T ss_pred --EEecCEEEEeccc
Confidence 8999999999997
No 182
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.66 E-value=6.1e-07 Score=90.72 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+++. |+++++++.+.++..+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchh
Confidence 3556666666666 999999999999987777788888888889999999999998764
No 183
>PRK06834 hypothetical protein; Provisional
Probab=98.65 E-value=2.3e-07 Score=96.10 Aligned_cols=143 Identities=19% Similarity=0.213 Sum_probs=77.0
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHH--HHHhHhhHHHhh----h-
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKIL--VYGASFGGELED----A- 95 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l--~~~~~~~~~~~~----~- 95 (498)
++||+||||||+|+++|+.|++.|.+|+|+|+... ....+ . ..+++....+ +..-...+.+.. .
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~------~~~~~-~--Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~ 73 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN------QELVG-S--RAGGLHARTLEVLDQRGIADRFLAQGQVAQ 73 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC------CCCCC-c--ceeeECHHHHHHHHHcCcHHHHHhcCCccc
Confidence 48999999999999999999999999999995221 11011 0 0112222221 111111111110 0
Q ss_pred -hcCCcccccccccCHHHHHH---HH-HHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEeCCCceEEEEcC
Q 042564 96 -RSYGWEVHEKIDFDWKKLLQ---KK-TDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQLDGTKLSYSAK 167 (498)
Q Consensus 96 -~~~g~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~~~g~~~~~~~d 167 (498)
..++. ..+++..+.. .. .-....+...+.+.+++.+++++.++ +..+ +.+.+.++..+|. ++++|
T Consensus 74 ~~~~~~-----~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~--~i~a~ 146 (488)
T PRK06834 74 VTGFAA-----TRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGR--TLRAQ 146 (488)
T ss_pred cceeee-----EecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCC--EEEeC
Confidence 00110 0111110000 00 00012233445555666789998876 3333 4566777776664 79999
Q ss_pred eEEEcCCCCCCCCC
Q 042564 168 HILIATGSRAQRAP 181 (498)
Q Consensus 168 ~liiAtG~~p~~p~ 181 (498)
+||.|.|..+....
T Consensus 147 ~vVgADG~~S~vR~ 160 (488)
T PRK06834 147 YLVGCDGGRSLVRK 160 (488)
T ss_pred EEEEecCCCCCcHh
Confidence 99999998776543
No 184
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.65 E-value=6.9e-07 Score=91.96 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHh----CC--CEEEcCccEEEEEEe-CCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEG----RG--INLHPRTTIKELIKS-EEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~----~G--v~i~~~~~v~~i~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
..+...+.+.+++ .| ++++++++|++|..+ ++.+.|.+.+| ++.+|.||+|+|....
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 4677888888888 77 889999999999877 33467777777 5999999999997654
No 185
>PRK06184 hypothetical protein; Provisional
Probab=98.65 E-value=1.1e-06 Score=91.91 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE---CCCeEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT---DHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+.+.|+++++++++.+++.+++++.+++ .+++++.+|.||.|.|.++..
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFV 170 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHH
Confidence 3456677778888999999999999988777777766 566789999999999987643
No 186
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.64 E-value=1.5e-06 Score=88.39 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=47.0
Q ss_pred HHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 244 MRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 244 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
+.+.+.+.+.+ .|++++++++++++..+++.+.+++++|+++.+|+||.|.|..+..
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWL 170 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCChh
Confidence 44555666655 4799999999999988777888889999999999999999987654
No 187
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.64 E-value=1.9e-07 Score=94.32 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAP 36 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEec
Confidence 57999999999999999999999999999995
No 188
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.63 E-value=4.3e-07 Score=94.96 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
..+.+.+.+.+++.|++++++++|.+|..+++. +.|.+.+|+++.+|.||++++...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence 568888999999999999999999999877655 578888888899999999988643
No 189
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.62 E-value=4.5e-07 Score=95.94 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=81.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC---------------------chhhHH
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG---------------------CVPKKI 81 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g---------------------~~p~~~ 81 (498)
++||||||||.||++||+++++.|.+|+|+||...... ......||.+...+ |-|..+
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g-~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS-HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC-ccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 58999999999999999999999999999996211100 00111122221101 222223
Q ss_pred HHHHhHhhHHHhhhhcCCcccccccccCH--HHHHH-----------H----HHHHHHHHhHHHHHHHHhCCcEEEEeE-
Q 042564 82 LVYGASFGGELEDARSYGWEVHEKIDFDW--KKLLQ-----------K----KTDEILRLNGIYKRLLSNAGVKLYEGE- 143 (498)
Q Consensus 82 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~-----------~----~~~~~~~~~~~~~~~~~~~gv~~~~~~- 143 (498)
.....+....+..+..+|+++.....-.+ ...-. + ....-..+...+.....+.+++++.++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~ 165 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWY 165 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcE
Confidence 33333444555556667776643110000 00000 0 000011233333344445689988876
Q ss_pred EE-EE-e-CCEE---EE-EeCCCceEEEEcCeEEEcCCCCC
Q 042564 144 GK-IV-G-PNEV---EV-TQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 144 ~~-~i-~-~~~~---~v-~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+. .+ + .+.+ .+ ...+|....+.++.||||||.-.
T Consensus 166 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 166 ALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred EEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 33 23 2 3332 12 23466666789999999999654
No 190
>PLN02697 lycopene epsilon cyclase
Probab=98.62 E-value=5.2e-07 Score=93.35 Aligned_cols=33 Identities=39% Similarity=0.549 Sum_probs=31.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..|||+||||||||+++|..|++.|++|+|||+
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~ 139 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGP 139 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecC
Confidence 458999999999999999999999999999994
No 191
>PRK07121 hypothetical protein; Validated
Probab=98.61 E-value=1.5e-06 Score=90.49 Aligned_cols=34 Identities=35% Similarity=0.388 Sum_probs=32.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.++||||||+|.||++||++|++.|.+|+|+||
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK 51 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLER 51 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 4579999999999999999999999999999995
No 192
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.61 E-value=2.2e-07 Score=94.80 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=36.5
Q ss_pred CCCccccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 13 QPNQEEQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 13 ~~~~~~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.|.....+...+||+||||||||+++|+.|++.|++|+|+|+
T Consensus 8 ~~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 49 (415)
T PRK07364 8 SPTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEA 49 (415)
T ss_pred CCCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEec
Confidence 344555566679999999999999999999999999999995
No 193
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.60 E-value=5.4e-07 Score=91.37 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..++.+.+.+.++..|.+++++++|.+|..++++ ..|++.+|+++.|+.||......|..
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~ 292 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDK 292 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccc
Confidence 3568888888889999999999999999876543 67888899999999999988877763
No 194
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.58 E-value=1.7e-06 Score=93.39 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
...+...+.+.+++ |++++.+++|.++..+++.+.|.+.+|..+.+|.||+|+|....
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 45677888888888 99999999999998877777788888877889999999997653
No 195
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.57 E-value=2.1e-06 Score=86.61 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCC-CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGRG-INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..+.+.+.+.+.+.| ++++.+++|+++..+++++.+.+++|+++.+|.||.|.|.....
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~v 165 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKV 165 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCHH
Confidence 346677777777777 99999999999988777788888899899999999999987653
No 196
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.57 E-value=1.4e-06 Score=91.70 Aligned_cols=45 Identities=36% Similarity=0.552 Sum_probs=38.7
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRG 75 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g 75 (498)
.++||+|||+|.+|++||+.|++.|.+|+|||| ....||+|.+.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk---------~~~~gG~~~~s~ 49 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEK---------QDKVGGSTAMSG 49 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEec---------CCCCCceeceec
Confidence 468999999999999999999999999999995 335678876654
No 197
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.56 E-value=8.6e-07 Score=92.40 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC----eEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG----EEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g----~~i~~D~vi~a~G~~p 298 (498)
+..+...+....++.|++++.+++|.++..+++.+.+.+.++ .++.++.||.|+|...
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 466767777778899999999999999987766666665543 2589999999999754
No 198
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.55 E-value=2e-07 Score=93.40 Aligned_cols=138 Identities=16% Similarity=0.109 Sum_probs=71.3
Q ss_pred cEEEECCChhHHHHHHHH--HhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHH-hhhhcCCcc
Q 042564 25 DLFVIGAGSGGVRAARFS--ANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGEL-EDARSYGWE 101 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l--~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~-~~~~~~g~~ 101 (498)
|||||||||||+++|.+| ++.|.+|+|||+... . .....|.| |.-.+.+.. +.+.+ ..+..+-+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~------~-~~~~~~tW--~~~~~~~~~---~~~~v~~~w~~~~v~ 68 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK------P-PWPNDRTW--CFWEKDLGP---LDSLVSHRWSGWRVY 68 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc------c-cccCCccc--ccccccccc---hHHHHheecCceEEE
Confidence 899999999999999999 779999999995211 1 11333311 111000000 00111 111111111
Q ss_pred cccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 102 VHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
....... ... ..+..-....+...+.+.+.+.++.++...+..++.. ...|.+.+|. +++++.||-|+|..+.
T Consensus 69 ~~~~~~~-~~~-~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~--~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 69 FPDGSRI-LID-YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGR--TIRARVVVDARGPSSP 143 (374)
T ss_pred eCCCceE-Ecc-cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCC--EEEeeEEEECCCcccc
Confidence 1110000 000 0000000112223333444456777777777776544 4567777876 8999999999995543
No 199
>PRK07045 putative monooxygenase; Reviewed
Probab=98.55 E-value=1.2e-06 Score=88.60 Aligned_cols=59 Identities=22% Similarity=0.438 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 243 EMRAVVARNLEG-RGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 243 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
++.+.+.+.+.+ .|+++++++++..+..++++ +.+++++|+++.+|.||-|.|..+..-
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR 168 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIR 168 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHH
Confidence 455666666654 58999999999999876555 467888898999999999999876543
No 200
>PRK11445 putative oxidoreductase; Provisional
Probab=98.55 E-value=6.1e-07 Score=89.22 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=29.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+|||+||||||||+++|+.|++. .+|+|+|+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~ 31 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDK 31 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEEC
Confidence 38999999999999999999999 99999995
No 201
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.53 E-value=6e-07 Score=92.23 Aligned_cols=30 Identities=37% Similarity=0.501 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHhCC-CcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFG-AKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek 54 (498)
||||||||.||++||++|++.| .+|+||||
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk 31 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEK 31 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEec
Confidence 8999999999999999999999 99999995
No 202
>PRK05868 hypothetical protein; Validated
Probab=98.52 E-value=5e-06 Score=83.31 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
++.+.+.+.+ ..|++++++++|++++.+++++.+++++|+++.+|+||-|-|.++..-
T Consensus 106 ~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR 163 (372)
T PRK05868 106 DLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVR 163 (372)
T ss_pred HHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHH
Confidence 3444443322 458999999999999877778889999999999999999999877654
No 203
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.52 E-value=2.8e-06 Score=85.04 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
+..+...+.+.+.+. |++++.+++|.++... .|.+.+|+ +.+|.||+|+|...+
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCChh
Confidence 345667777777765 9999999999999642 56777774 789999999997654
No 204
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.51 E-value=1.3e-06 Score=90.37 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=35.4
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.+++++++|.+|..+++++.|++++|+++.+|.||+|+..
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCH
Confidence 6899999999999887778888888888999999999874
No 205
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.51 E-value=5.1e-06 Score=87.80 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEE--CCCe-EEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVIT--DHGE-EIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~--~~g~-~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+.+. ++++++++++.+++.+++++.+.+ .+++ ++.+|.||.|.|..+..
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~v 187 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPL 187 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHH
Confidence 4555666666664 799999999999988777765554 3454 68999999999988765
No 206
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.50 E-value=1.5e-06 Score=89.98 Aligned_cols=99 Identities=23% Similarity=0.412 Sum_probs=69.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+|+ .+ .+ .|
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~------~~---~~---------l~------------------------- 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEM------LD---RI---------LP------------------------- 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc------CC---CC---------CC-------------------------
Confidence 5899999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.++ . .+...+.+.+++.|++++.++ +..++ .+.+.+...+|...++.+|.||+|+|..|+..
T Consensus 208 ---~~~-~-----------~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 208 ---GED-A-----------EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred ---CCC-H-----------HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 000 0 011123345567799999885 44443 45666665555435799999999999999866
No 207
>PRK07233 hypothetical protein; Provisional
Probab=98.49 E-value=2.2e-06 Score=87.98 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
..+.+.+.+.+++.|++++++++|.+|..+++++.+...+++++.+|.||+|++..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 45788888889999999999999999988777665555677789999999999853
No 208
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.48 E-value=2e-07 Score=68.22 Aligned_cols=36 Identities=36% Similarity=0.545 Sum_probs=31.4
Q ss_pred EECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 28 VIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 28 IIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
|||||++|+++|+.|++.|.+|+|+|+ ...+||.|.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~---------~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEK---------NDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEES---------SSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEec---------CcccCccee
Confidence 899999999999999999999999996 566777764
No 209
>PRK06185 hypothetical protein; Provisional
Probab=98.48 E-value=4e-06 Score=85.23 Aligned_cols=58 Identities=26% Similarity=0.341 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeE---EEEECCCe-EEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEG-RGINLHPRTTIKELIKSEEGV---KVITDHGE-EIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~---~v~~~~g~-~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+.+ .|++++.++.+.++..+++.+ .+...+|+ ++.+|.||.|.|.....
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~v 171 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRV 171 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHH
Confidence 455666666655 489999999999998776653 33345664 79999999999987643
No 210
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.47 E-value=4.4e-06 Score=72.61 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=24.8
Q ss_pred EEECCChhHHHHHHHHHhC-----CCcEEEEc
Q 042564 27 FVIGAGSGGVRAARFSANF-----GAKVGICE 53 (498)
Q Consensus 27 vIIGgG~aGl~aA~~l~~~-----g~~V~lve 53 (498)
+|||||++|++++.+|.+. ..+|+|+|
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd 32 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFD 32 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEc
Confidence 5999999999999999986 46999999
No 211
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.47 E-value=6e-06 Score=85.33 Aligned_cols=59 Identities=17% Similarity=0.352 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhCC-CEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRG-INLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G~~p~ 299 (498)
...+.+.+.+.+++.| ++++++++|+++..++++ +.+.+ .+|+ ++.++.||+|+|....
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 3467788888888876 899999999999875554 55543 3353 6899999999997653
No 212
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.47 E-value=4e-06 Score=85.24 Aligned_cols=55 Identities=24% Similarity=0.252 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEe-CCe-EEEEECCCeEEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKS-EEG-VKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
..+...+.+.+.+.|++++.+++|.++... ++. ..+.+.+| ++.++.||+|+|-.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 345566778888999999999999999754 333 45667777 59999998887754
No 213
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.46 E-value=1.2e-05 Score=80.64 Aligned_cols=59 Identities=12% Similarity=0.286 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 242 DEMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
.++.+.+.+.+.+. +++++.++.+.++..+++++.+.++++ ++.+|+||-|-|..+..-
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKVR 163 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchhH
Confidence 45677777777776 499999999999988877888888776 899999999999887664
No 214
>PRK07190 hypothetical protein; Provisional
Probab=98.46 E-value=1.3e-06 Score=90.41 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=31.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+||+||||||+|+++|+.|++.|.+|+||||
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr 36 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDK 36 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeC
Confidence 348999999999999999999999999999995
No 215
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.44 E-value=3.1e-06 Score=88.55 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=83.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC--CC--------C---C-CCCHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE--LP--------L---R-GFDDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~--~~--------l---~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
..+++|||||+.|+.+|..+++.|.+|+++.... .. + + ...+++.+.+.+.+++.|+++++++.+.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 3589999999999999999999999999997531 00 0 1 1345788888999999999999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
++...++...+.+.+|+.+.+|.+|+|+|.+|...
T Consensus 291 ~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~ 325 (517)
T PRK15317 291 KLEPAAGLIEVELANGAVLKAKTVILATGARWRNM 325 (517)
T ss_pred EEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCC
Confidence 99887666778888888899999999999987543
No 216
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.44 E-value=2e-07 Score=82.73 Aligned_cols=33 Identities=36% Similarity=0.684 Sum_probs=28.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||+||||||+|++||+.|++.|+||+++|+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~ 48 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIER 48 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEES
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEec
Confidence 468999999999999999999999999999995
No 217
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.43 E-value=3.6e-06 Score=88.02 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=82.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC--CCCC-----------C-CCCHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK--ELPL-----------R-GFDDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~--~~~l-----------~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
..+|+|||||+.|+.+|..+++.|.+|+++... ..+. + ...+++.+.+.+.+++.|++++.+++|.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~ 291 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEE
Confidence 468999999999999999999999999998631 1111 1 1345677888888889999999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
++..+++...+.+.+|+.+.+|.+|+|+|..|...
T Consensus 292 ~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~ 326 (515)
T TIGR03140 292 KIETEDGLIVVTLESGEVLKAKSVIVATGARWRKL 326 (515)
T ss_pred EEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCC
Confidence 99877666778888888899999999999987543
No 218
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.43 E-value=3.8e-06 Score=88.54 Aligned_cols=35 Identities=34% Similarity=0.456 Sum_probs=32.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|..++||||||+|.||++||+.+++.|.+|+||||
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK 35 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQ 35 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 44678999999999999999999999999999995
No 219
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.43 E-value=5.8e-06 Score=83.45 Aligned_cols=58 Identities=28% Similarity=0.297 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhCC-CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRG-INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
+..+.+.+.+.+++.| ..+..++.+..+..+.+...|.+.+|+ +.+|.||+|+|...+
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 3577888888899999 556668888888764234677788887 999999999996533
No 220
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.41 E-value=5.9e-06 Score=86.13 Aligned_cols=35 Identities=40% Similarity=0.560 Sum_probs=32.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|+..|||+|||||+.|+++|+.|+++|++|+||||
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk 37 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQ 37 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence 45579999999999999999999999999999996
No 221
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.41 E-value=8.3e-06 Score=76.60 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=33.4
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEccC
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 55 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~ 55 (498)
.|.+..|++|||+|.-|+++|++|++.|.+++++|+-
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf 39 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQF 39 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhcCCeEEEEecc
Confidence 4556689999999999999999999999999999953
No 222
>PRK08244 hypothetical protein; Provisional
Probab=98.40 E-value=1.8e-06 Score=90.06 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||+||||||+|+++|+.|++.|.+|+||||
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr 33 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIER 33 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 48999999999999999999999999999995
No 223
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.40 E-value=1.7e-05 Score=84.01 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEEC-CCe--EEEc-CEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITD-HGE--EIVA-DVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~-~g~--~i~~-D~vi~a~G~~p~ 299 (498)
...+...+.+.+++.|++++.++.+.++..+++. ..|... +++ .+.+ +.||+|+|-...
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 5678888889999999999999999998765443 344443 443 4665 689999986544
No 224
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.40 E-value=2.2e-06 Score=90.32 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=31.7
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+..+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er 41 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLER 41 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 3458999999999999999999999999999995
No 225
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.40 E-value=1.8e-06 Score=87.27 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
++||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~ 33 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 47999999999999999999999999999995
No 226
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.38 E-value=3.6e-06 Score=76.68 Aligned_cols=97 Identities=27% Similarity=0.385 Sum_probs=68.9
Q ss_pred EEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCCCC--------------CC-------------CC---------------
Q 042564 205 VVLGGGYIAVEFASIWRGMGST-VDLLFRKELPL--------------RG-------------FD--------------- 241 (498)
Q Consensus 205 ~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~~l--------------~~-------------~~--------------- 241 (498)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+. +. +.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 99999885320 00 00
Q ss_pred -HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC--CcCCC
Q 042564 242 -DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR--APNTK 301 (498)
Q Consensus 242 -~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~~~ 301 (498)
+++.+.+++..++.++++++++.|.++..++++..|++.+++++.||.||+|+|. .|...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 1344667778888899999999999999998889999999988999999999997 55443
No 227
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.38 E-value=1.1e-05 Score=83.00 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHh-CCCEEEcCccEEEEEEe-CCeEEEE---ECCCe--EEEcCEEEEecCCCcC
Q 042564 242 DEMRAVVARNLEG-RGINLHPRTTIKELIKS-EEGVKVI---TDHGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 242 ~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~-~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~ 299 (498)
..+.+.+.+.+.+ .|++++++++|.++..+ ++.+.+. +.+++ ++.+|.||+|+|....
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 4566777777754 59999999999999876 5455554 33442 6899999999998764
No 228
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.37 E-value=1.4e-06 Score=88.21 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=31.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhC---CCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANF---GAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~---g~~V~lvek 54 (498)
.++||+||||||||+++|+.|++. |.+|+|+|+
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 358999999999999999999998 999999995
No 229
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.37 E-value=7e-06 Score=84.73 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC-eEEEEE---CCC--eEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEE-GVKVIT---DHG--EEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~v~~---~~g--~~i~~D~vi~a~G~~p~ 299 (498)
...+...+.+.+++.|++++++++|+++..+++ .+.+.+ .+| .++.+|.||+|+|....
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH
Confidence 456788888888899999999999999987544 444543 234 26899999999997653
No 230
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.37 E-value=9.7e-06 Score=85.81 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=32.9
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++.++||||||+|.||++||+.+++.|.+|+|+||
T Consensus 7 ~~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk 42 (584)
T PRK12835 7 NFDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEK 42 (584)
T ss_pred CccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEc
Confidence 345578999999999999999999999999999995
No 231
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.36 E-value=3.3e-06 Score=96.11 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.++||||||+|.||++||+++++.|.+|+|+||
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK 440 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEK 440 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEc
Confidence 468999999999999999999999999999995
No 232
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.36 E-value=1.6e-05 Score=81.45 Aligned_cols=60 Identities=12% Similarity=0.251 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCC---CEEEcCccEEEEEEe-------CCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 242 DEMRAVVARNLEGRG---INLHPRTTIKELIKS-------EEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ~~~~~~l~~~l~~~G---v~i~~~~~v~~i~~~-------~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
..+.+.+.+.+.+.+ +++++++++.+++.+ ++.+.+++.+|+++.+|+||-|-|..+..-
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 345566666666654 999999999999642 345788889999999999999999887664
No 233
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.36 E-value=5.7e-06 Score=83.00 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
+.+.+.+.+ ..+++++++|+.|..+..+..+++.+|..+.+|.||+++..
T Consensus 217 l~~al~~~l---~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 217 LIEALAEKL---EAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred HHHHHHHHh---hhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCH
Confidence 344444444 44489999999999887778888999999999999998754
No 234
>PLN02985 squalene monooxygenase
Probab=98.36 E-value=2.3e-06 Score=89.05 Aligned_cols=37 Identities=32% Similarity=0.412 Sum_probs=33.3
Q ss_pred ccCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 18 EQTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 18 ~~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...+..+||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr 74 (514)
T PLN02985 38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIER 74 (514)
T ss_pred cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 3344578999999999999999999999999999995
No 235
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.35 E-value=2.4e-06 Score=86.11 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHhCC-CcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFG-AKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek 54 (498)
||+||||||+|+++|+.|++.| .+|+|+|+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~ 31 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeC
Confidence 7999999999999999999999 99999995
No 236
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.34 E-value=9e-06 Score=84.14 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G 295 (498)
.+.+.+.+.+.+ ++++++++|++|..+++++.|.+.+|+.+.+|.||+|+.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 455555555543 579999999999988888888888888899999999985
No 237
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.34 E-value=4.1e-07 Score=80.18 Aligned_cols=32 Identities=41% Similarity=0.648 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.||+|+||||+||+||++|++.|.||+++|+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~ 61 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFER 61 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEe
Confidence 45999999999999999999999999999995
No 238
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.33 E-value=1.5e-05 Score=81.65 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=78.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------------------------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL------------------------------------------- 237 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l------------------------------------------- 237 (498)
+++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+-
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 5789999999999999999999999999999865320
Q ss_pred --CCC---------------CHHHHHHHHHHHHhCCCE--EEcCccEEEEEEeCCeEEEEECCC--e--EEEcCEEEEec
Q 042564 238 --RGF---------------DDEMRAVVARNLEGRGIN--LHPRTTIKELIKSEEGVKVITDHG--E--EIVADVVLFAT 294 (498)
Q Consensus 238 --~~~---------------~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~v~~~~g--~--~i~~D~vi~a~ 294 (498)
+.. ..++.+.+++..+..|+. ++++++|.++...++...|++.++ . +..+|.||+|+
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAt 169 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCN 169 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEec
Confidence 000 035667777777788888 899999999988777777776532 2 45799999999
Q ss_pred C--CCcCCCC
Q 042564 295 G--RAPNTKR 302 (498)
Q Consensus 295 G--~~p~~~~ 302 (498)
| ..|+...
T Consensus 170 G~~~~P~~P~ 179 (461)
T PLN02172 170 GHYTEPNVAH 179 (461)
T ss_pred cCCCCCcCCC
Confidence 9 4666543
No 239
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.33 E-value=2.2e-06 Score=84.16 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=36.4
Q ss_pred hCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC
Q 042564 254 GRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295 (498)
Q Consensus 254 ~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G 295 (498)
+.|=.+..++.|.+|..++++++|+..+..+..+|.+|+++.
T Consensus 218 ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiP 259 (450)
T COG1231 218 QLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIP 259 (450)
T ss_pred HhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecC
Confidence 346668888999999999999999998856799999999986
No 240
>PRK06126 hypothetical protein; Provisional
Probab=98.33 E-value=3.7e-06 Score=88.85 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr 38 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVER 38 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 358999999999999999999999999999995
No 241
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.33 E-value=3.9e-06 Score=86.37 Aligned_cols=101 Identities=18% Similarity=0.319 Sum_probs=75.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCC------CC----CC-C--HHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELP------LR----GF-D--DEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~------l~----~~-~--~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
++|+|||+|+.|+.+|..|++++ .+|+++++.+.+ ++ .. + .++.....+.+++.|++++.++.|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999999875 489999988753 11 11 1 1223334566778899999999999
Q ss_pred EEEEeCCeEEEEE-CCCeEEE--cCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVIT-DHGEEIV--ADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~-~~g~~i~--~D~vi~a~G~~p~~~~ 302 (498)
+|..+++.+.+.. .+++.+. +|.+|+|||.+|+...
T Consensus 81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 119 (444)
T PRK09564 81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP 119 (444)
T ss_pred EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCC
Confidence 9987766665553 2355666 9999999999987654
No 242
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.33 E-value=1.4e-05 Score=84.07 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeE-EEEE---CCC--eEEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGV-KVIT---DHG--EEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~---~~g--~~i~~D~vi~a~G~~p 298 (498)
+..+...+.....++|++++++++|+++..+++++ .+.+ .++ ..+.+|.||.|+|...
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 35566667777888999999999999998776543 3443 233 3689999999999754
No 243
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=6.5e-07 Score=89.23 Aligned_cols=144 Identities=26% Similarity=0.387 Sum_probs=74.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCC-CCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCC
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPI-SSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYG 99 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~-~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g 99 (498)
...|||+|||||.||+.||..+++.|.+++|+-...... ..++...+||.. .|.+-+.+--.+. ...... ...+
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~--KG~lvrEIDALGG-~Mg~~~--D~~~ 76 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPG--KGHLVREIDALGG-LMGKAA--DKAG 76 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcc--cceeEEeehhccc-hHHHhh--hhcC
Confidence 345999999999999999999999999999998311110 111222233321 0100000000000 011110 0111
Q ss_pred cccc-----cccccCHHHHHHHHHHHHHHHhHHHHHHHHh-CCcEEEEeEEEE--EeCC--EEEEEeCCCceEEEEcCeE
Q 042564 100 WEVH-----EKIDFDWKKLLQKKTDEILRLNGIYKRLLSN-AGVKLYEGEGKI--VGPN--EVEVTQLDGTKLSYSAKHI 169 (498)
Q Consensus 100 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~--i~~~--~~~v~~~~g~~~~~~~d~l 169 (498)
+++. ..|.+. ..+.+.....+...++..+++ .++.++.+.+.. ++++ -+-|.+.+|. .+.++.|
T Consensus 77 IQ~r~LN~sKGPAVr----a~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~--~~~a~aV 150 (621)
T COG0445 77 IQFRMLNSSKGPAVR----APRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGP--EFHAKAV 150 (621)
T ss_pred CchhhccCCCcchhc----chhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCC--eeecCEE
Confidence 1110 011110 011111222344555555554 488888888663 3333 2556677776 8999999
Q ss_pred EEcCCC
Q 042564 170 LIATGS 175 (498)
Q Consensus 170 iiAtG~ 175 (498)
|++||.
T Consensus 151 VlTTGT 156 (621)
T COG0445 151 VLTTGT 156 (621)
T ss_pred EEeecc
Confidence 999995
No 244
>PRK07236 hypothetical protein; Provisional
Probab=98.32 E-value=5.2e-06 Score=83.77 Aligned_cols=101 Identities=25% Similarity=0.302 Sum_probs=77.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC------CCHHHHHHHHH------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG------FDDEMRAVVAR------------------------ 250 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~------~~~~~~~~l~~------------------------ 250 (498)
+.+|+|||||+.|+.+|..|++.|.+|+++++.+..... +.+...+.+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 468999999999999999999999999999998643321 23332222221
Q ss_pred -------------------HHHh--CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 251 -------------------NLEG--RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 251 -------------------~l~~--~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
.|.+ .++++++++.|++++.+++++.+++++|+++.+|.||.|-|..+..-
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVR 157 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHH
Confidence 1111 13568999999999888778889999999999999999999876553
No 245
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.31 E-value=4.1e-06 Score=84.77 Aligned_cols=98 Identities=24% Similarity=0.310 Sum_probs=73.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC--cEEEEeeCCCCC---CCCCHHHH---------HHHHHHHHhCCCEEEcCccEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGS--TVDLLFRKELPL---RGFDDEMR---------AVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv~~~~~~l---~~~~~~~~---------~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
.++++|||+|+.|+.+|..|++.+. +|+++.+.+... +.+.+.+. -.-.+.+.+.||+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999999876 799998765421 11222111 001244667899999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+..+. ..+.+.+|+++.+|.+|+|||.+|..
T Consensus 83 ~id~~~--~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRDT--RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECCC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 986654 35667788889999999999999865
No 246
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.30 E-value=4.3e-06 Score=84.41 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+||+||||||+|+++|+.|++.|++|+|+|+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~ 33 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEEC
Confidence 47999999999999999999999999999995
No 247
>PRK06996 hypothetical protein; Provisional
Probab=98.29 E-value=2e-05 Score=79.84 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC---eEEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG---EEIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~ 297 (498)
..+.+.+.+.+++.|++++.++++.+++.+++++.+.+.++ +++.+|+||-|.|..
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCC
Confidence 45777888888888999999999999988888888888754 589999999999964
No 248
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.29 E-value=1e-05 Score=82.97 Aligned_cols=97 Identities=22% Similarity=0.390 Sum_probs=66.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+++++ . ..+ .|
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~------~---~~~---------l~------------------------- 194 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDA------A---STI---------LP------------------------- 194 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEec------C---Ccc---------CC-------------------------
Confidence 4799999999999999999999999999993 1 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
..+ .. +.....+.+++.|++++.++ +..++. ..+.+.. +++ ++.+|.+++|+|.+|+..
T Consensus 195 ---~~~-~~-----------~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~--~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 195 ---REE-PS-----------VAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDE--TYRFDALLYATGRKPNTE 256 (438)
T ss_pred ---CCC-HH-----------HHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCe--EEEcCEEEEeeCCCCCcc
Confidence 000 00 11122345667899999875 555543 3455543 343 799999999999999865
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 257 ~ 257 (438)
T PRK07251 257 P 257 (438)
T ss_pred c
Confidence 3
No 249
>PRK07236 hypothetical protein; Provisional
Probab=98.29 E-value=1.3e-05 Score=80.99 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 47999999999999999999999999999995
No 250
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.24 E-value=1e-06 Score=91.31 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
..+.+.+.+.+++.|++|+++++|++|..++++ +++...+|+.+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 568899999999999999999999999987764 7777777777999999998776
No 251
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.22 E-value=3.8e-05 Score=72.25 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=101.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC----------CC----------------------------CCHH
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL----------RG----------------------------FDDE 243 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l----------~~----------------------------~~~~ 243 (498)
-+|+|||+|+.|+-+|..+++.|.+|.++++...+- +. ...+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~e 101 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAE 101 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHH
Confidence 479999999999999999999999999999976431 00 1123
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCC--e-EEEEEC-----------CCeEEEcCEEEEecCCCcCCCCCCcccCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEE--G-VKVITD-----------HGEEIVADVVLFATGRAPNTKRLNLKAVG 309 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~-~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~~l~l~~~g 309 (498)
+.+.+.+...+.|++++.++.+.++..+++ . ..+.+. +...+.++.||.|||........-.+..+
T Consensus 102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~ 181 (254)
T TIGR00292 102 FISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKIV 181 (254)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHcC
Confidence 455566777788999999999999887655 2 334332 12468999999999976533211011111
Q ss_pred ceeCC-----CCCeEcCC-------CCCCCCCCeEEecccCCC----CCChH--HH-HHHHHHHHHHHhC
Q 042564 310 VEVDQ-----TGAVKVDE-------NSRTNVPSIWAVGDVTNR----MNLTP--VA-LMEGTCFAKTVFG 360 (498)
Q Consensus 310 i~~~~-----~g~i~vd~-------~~~t~~~~iya~GD~~~~----~~~~~--~A-~~~g~~aa~~i~~ 360 (498)
+.... -+..+.+. +-+--+|++|++|=.+.. |...+ .+ +.+|+.+|+.++.
T Consensus 182 ~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 182 LEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred cccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 11111 01122221 111247999999966542 22222 33 3578888887763
No 252
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.21 E-value=1.3e-05 Score=83.18 Aligned_cols=100 Identities=26% Similarity=0.413 Sum_probs=67.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||++|+.+|..|++.|.+|+|+|+ .+ .+ .|
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~------~~---~i---------l~------------------------- 217 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEA------AD---RI---------LP------------------------- 217 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEe------cC---cc---------CC-------------------------
Confidence 5899999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe---CCEEE-EEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG---PNEVE-VTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~---~~~~~-v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
..+. .+...+.+.+++.||+++.++ +..++ .+.+. +...+|+..++.+|.+++|+|.+|+
T Consensus 218 ---~~~~------------~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 218 ---TEDA------------ELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred ---cCCH------------HHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 0010 011122344567799999886 54554 33333 3344565457999999999999988
Q ss_pred CCC
Q 042564 179 RAP 181 (498)
Q Consensus 179 ~p~ 181 (498)
...
T Consensus 283 ~~~ 285 (472)
T PRK05976 283 TEG 285 (472)
T ss_pred CCC
Confidence 653
No 253
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.20 E-value=1.6e-05 Score=84.79 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeC--Ce-EEEEE---CCCe--EEEcCEEEEecCCCc
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSE--EG-VKVIT---DHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~-~~v~~---~~g~--~i~~D~vi~a~G~~p 298 (498)
+..+...+.+..++.|++++.+++|.++..++ +. ..|.+ .+++ .+.+|.||.|+|...
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 56788888888999999999999999997653 33 33333 2343 589999999999654
No 254
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.19 E-value=5.9e-05 Score=71.14 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=99.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC----------C----------------------------CCHH
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR----------G----------------------------FDDE 243 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~----------~----------------------------~~~~ 243 (498)
-+|+|||+|+.|+-+|..+++.|.+|.++++...+-. . ...+
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~ 105 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVE 105 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHH
Confidence 4799999999999999999999999999998754310 0 1124
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCC-e-EEEEEC-----------CCeEEEcCEEEEecCCCcCCCCCCccc---
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEE-G-VKVITD-----------HGEEIVADVVLFATGRAPNTKRLNLKA--- 307 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~-~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~~l~l~~--- 307 (498)
+...+.+...+.|++++.++.+.++..+++ . ..+... +...+.++.||.|+|........-.+.
T Consensus 106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~~ 185 (257)
T PRK04176 106 AAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGPE 185 (257)
T ss_pred HHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcCC
Confidence 455567777888999999999999876554 2 223221 224789999999999654432100000
Q ss_pred CCceeCCCCCe--------EcCCCCCCCCCCeEEecccCCC----CCChH--HH-HHHHHHHHHHHhC
Q 042564 308 VGVEVDQTGAV--------KVDENSRTNVPSIWAVGDVTNR----MNLTP--VA-LMEGTCFAKTVFG 360 (498)
Q Consensus 308 ~gi~~~~~g~i--------~vd~~~~t~~~~iya~GD~~~~----~~~~~--~A-~~~g~~aa~~i~~ 360 (498)
.+..+...... .|+..-+ -+|++|++|=.+.. |...+ .+ +.+|+.+|+.++.
T Consensus 186 ~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 186 LGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred cccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHH
Confidence 01111101112 2222222 47999999976642 22222 23 4588888888764
No 255
>PRK07538 hypothetical protein; Provisional
Probab=98.18 E-value=5.8e-05 Score=76.88 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHh-CC-CEEEcCccEEEEEEeCCeEEEEECCC-----eEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEG-RG-INLHPRTTIKELIKSEEGVKVITDHG-----EEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~-~G-v~i~~~~~v~~i~~~~~~~~v~~~~g-----~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+.+.+.+ .| ..++++++++++..+++++.+.+.++ +++.+|+||-|.|..+..
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHHH
Confidence 455556666544 35 57999999999987766655555432 479999999999987654
No 256
>PRK06753 hypothetical protein; Provisional
Probab=98.17 E-value=1.3e-05 Score=80.48 Aligned_cols=30 Identities=37% Similarity=0.578 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
||+||||||+|+++|+.|++.|++|+|+|+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 799999999999999999999999999995
No 257
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.17 E-value=6.5e-06 Score=82.22 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHHhC--CCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANF--GAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek 54 (498)
||+|||||+||+++|..|++. |++|+|+|+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~ 32 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEA 32 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 899999999999999999986 999999994
No 258
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.16 E-value=0.00012 Score=77.68 Aligned_cols=56 Identities=16% Similarity=0.320 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
++.+.|.+.+... .+++++.|.+++.+++.+.+++.+|+++.+|.||.|-|.+...
T Consensus 195 ~L~~~L~~alg~~--~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 195 TLQQILARAVGED--VIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred HHHHHHHhhCCCC--EEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHH
Confidence 3444444433221 3678889999988888888999999889999999999987654
No 259
>PRK07208 hypothetical protein; Provisional
Probab=98.16 E-value=2.1e-06 Score=89.22 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E-EEEE--CCCe--EEEcCEEEEecCCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V-KVIT--DHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~--~~g~--~i~~D~vi~a~G~~ 297 (498)
..+.+.+.+.+++.|++++++++|++|..++++ + .++. .+|+ .+.+|.||+++...
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 457788888898899999999999999887665 2 2332 2353 58899999998753
No 260
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.15 E-value=3.1e-05 Score=74.84 Aligned_cols=97 Identities=25% Similarity=0.275 Sum_probs=77.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC---------------------------------------C----
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR---------------------------------------G---- 239 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~---------------------------------------~---- 239 (498)
+|+|||+|+.|+-+|..|++.|.+|+++++.+..-. .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 589999999999999999999999999998853210 0
Q ss_pred ------C-CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECC-CeEEEcCEEEEecCCCcC
Q 042564 240 ------F-DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH-GEEIVADVVLFATGRAPN 299 (498)
Q Consensus 240 ------~-~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~ 299 (498)
+ -.++.+.+.+.+++.|++++.++++.++..+++.+.+.+.+ +.++.+|.||.|+|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchH
Confidence 1 12355667777888899999999999998777776666554 457999999999998754
No 261
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.15 E-value=6.1e-05 Score=80.60 Aligned_cols=184 Identities=19% Similarity=0.202 Sum_probs=116.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|.|||+|+.|+-+|..|.+.|..|++.+|++++ .|. +|+.+.++-.+.|.+.||++.+|++|-.-
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~--- 1861 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH--- 1861 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc---
Confidence 579999999999999999999999999999999975 233 78888888889999999999999776321
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcCCCCCCccc---CCceeC-----CCCCeEcCC-----CCCCCCCCeEEecccC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPNTKRLNLKA---VGVEVD-----QTGAVKVDE-----NSRTNVPSIWAVGDVT 338 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~---~gi~~~-----~~g~i~vd~-----~~~t~~~~iya~GD~~ 338 (498)
+. -|+-.-+-|.||+|+|..-..++- ... .|+.+. .+-.-..|. +.....+.|..+|---
T Consensus 1862 -----vs-~d~l~~~~daiv~a~gst~prdlp-v~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggd 1934 (2142)
T KOG0399|consen 1862 -----VS-LDELKKENDAIVLATGSTTPRDLP-VPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGD 1934 (2142)
T ss_pred -----cc-HHHHhhccCeEEEEeCCCCCcCCC-CCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCC
Confidence 21 122234579999999987666532 111 122110 000111222 2223445677776433
Q ss_pred CCCCChHHHHHHHHHHHHHH-hCCCCCCCCCCCCcEEEeccCCeeEeeCCHHHHHHcCCC
Q 042564 339 NRMNLTPVALMEGTCFAKTV-FGGQPCKPDYRDVPCAVFCIPPLSVVGLSEEQAIEQGKG 397 (498)
Q Consensus 339 ~~~~~~~~A~~~g~~aa~~i-~~~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~~~~ 397 (498)
.+........+.|-.-..|+ +-.+++.......||..| |.+-.|-+.-+|+++. |+
T Consensus 1935 tg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqw--prvfrvdygh~e~~~~-~g 1991 (2142)
T KOG0399|consen 1935 TGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQW--PRVFRVDYGHAEAKEH-YG 1991 (2142)
T ss_pred ccccccccchhhccceecceeecCCCCcccCCCCCCccC--ceEEEeecchHHHHHH-hC
Confidence 33333334444543333332 112222333345788777 7788899999999886 54
No 262
>PRK06834 hypothetical protein; Provisional
Probab=98.12 E-value=4e-05 Score=79.51 Aligned_cols=100 Identities=16% Similarity=0.255 Sum_probs=79.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC---CC---CC----------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL---RG---FD---------------------------------- 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l---~~---~~---------------------------------- 241 (498)
..|+|||+|+.|+-+|..|.+.|.+|+++++.+... +. +.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 479999999999999999999999999999865210 00 01
Q ss_pred ----------------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 242 ----------------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 242 ----------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
..+.+.+.+.+++.|++++++++++++..+++++.+++.+|+++.+|.||.|.|.++...
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 112233456667779999999999999988888888888888899999999999988653
No 263
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.12 E-value=2.9e-06 Score=84.09 Aligned_cols=42 Identities=31% Similarity=0.578 Sum_probs=37.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR 74 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~ 74 (498)
+|++|||||++|+++|.+|++.|.+|+|+|+ ...+||.|.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk---------~~~iGG~~~~~ 43 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEK---------RNHIGGNCYDE 43 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEec---------CCCCCCceeee
Confidence 7999999999999999999999999999995 56789988653
No 264
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.11 E-value=2.8e-05 Score=59.14 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+++|||||+.|+-+|..|++.|.+|+|+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEec
Confidence 489999999999999999999999999993
No 265
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.10 E-value=2.2e-05 Score=80.07 Aligned_cols=101 Identities=18% Similarity=0.124 Sum_probs=74.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC--C---------CHHHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG--F---------DDEMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~--~---------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
.++|+|||||+.|+.+|..|...+.+|+++++.+..... + ..++...+.+.++..+++++.+ +|.+|+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~Id 88 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDVD 88 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEEE
Confidence 468999999999999999887667899999987753211 1 1223334556666778888764 899998
Q ss_pred EeCCeEEEEE--------CCCeEEEcCEEEEecCCCcCCCC
Q 042564 270 KSEEGVKVIT--------DHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 270 ~~~~~~~v~~--------~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+++.+.+.. .+|+++++|.+|+|+|..|+...
T Consensus 89 ~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ 129 (424)
T PTZ00318 89 FEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN 129 (424)
T ss_pred cCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCC
Confidence 7766555522 45668999999999999987653
No 266
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.09 E-value=2.4e-05 Score=83.57 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=32.1
Q ss_pred CCCCccEEEECCChhHHHHHHHHHh-CCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek 54 (498)
|..++||+||||||+||++|+.|++ .|.+|+|||+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~ 64 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVER 64 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEc
Confidence 4557899999999999999999999 5999999994
No 267
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.09 E-value=2.2e-05 Score=86.12 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=75.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC----CCcEEEEeeCCCCC------CC-C----CHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM----GSTVDLLFRKELPL------RG-F----DDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~----g~~V~lv~~~~~~l------~~-~----~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
++|+|||+|..|+.+|..|.+. +.+|+++.+.+.+. +. + ..++.....+.+++.||+++.++.|.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 5899999999999999999765 46899998877632 11 1 11222223456778899999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+..+. ..|.+.+|+.+.+|.+|+|||.+|....
T Consensus 84 ~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p~~p~ 117 (847)
T PRK14989 84 TINRQE--KVIHSSAGRTVFYDKLIMATGSYPWIPP 117 (847)
T ss_pred EEeCCC--cEEEECCCcEEECCEEEECCCCCcCCCC
Confidence 886543 4566788888999999999999987654
No 268
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.08 E-value=1.9e-05 Score=78.99 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=73.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHC---CCcEEEEeeCCCCCC--CC---------CHHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 203 RAVVLGGGYIAVEFASIWRGM---GSTVDLLFRKELPLR--GF---------DDEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~---g~~V~lv~~~~~~l~--~~---------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
+|+|||||+.|+.+|..+.+. +.+|+++++.+...- .+ ..++...+.+.+++.|++++.+ .|..|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 489999999999999998643 578999998775311 11 1223334566677789999876 78888
Q ss_pred EEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 269 IKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 269 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
..+++ .|.+.+|+++.+|.+|+|||..|....
T Consensus 80 d~~~~--~V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 80 DPDRR--KVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ecccC--EEEECCCCcccccEEEEccCCCCCCCC
Confidence 76554 577788888999999999999998754
No 269
>PRK10262 thioredoxin reductase; Provisional
Probab=98.07 E-value=8.5e-05 Score=72.94 Aligned_cols=101 Identities=15% Similarity=0.108 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC---C--------CCC-----CCHHHHHHHHHHHHhCCCEEEcCc
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL---P--------LRG-----FDDEMRAVVARNLEGRGINLHPRT 263 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~---~--------l~~-----~~~~~~~~l~~~l~~~Gv~i~~~~ 263 (498)
..++|+|||+|+.|+.+|..+.+.|.++.+++..+. + ++. ..+.+.+.+.+.....+++++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 357899999999999999999999999988864321 0 111 12345667777777778887776
Q ss_pred cEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 264 TIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 264 ~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+..++..++.+.+..+++ .+.+|.||+|+|..|....
T Consensus 84 ~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~~~~~ 121 (321)
T PRK10262 84 HINKVDLQNRPFRLTGDSG-EYTCDALIIATGASARYLG 121 (321)
T ss_pred EEEEEEecCCeEEEEecCC-EEEECEEEECCCCCCCCCC
Confidence 5667766655556655444 6899999999999987543
No 270
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.07 E-value=3.9e-06 Score=86.12 Aligned_cols=41 Identities=39% Similarity=0.492 Sum_probs=36.8
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTC 71 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~ 71 (498)
..++|||||||+|||+||++|.+.|.+|+|+|. +..+||..
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEA---------RdRvGGRI 54 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEA---------RDRVGGRI 54 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEec---------cCCcCcee
Confidence 357999999999999999999999999999995 67778774
No 271
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.06 E-value=3e-05 Score=79.48 Aligned_cols=101 Identities=14% Similarity=0.197 Sum_probs=71.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCC--C-CCCHHH-------HHHH---HHHH-HhCCCEEEcCccE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPL--R-GFDDEM-------RAVV---ARNL-EGRGINLHPRTTI 265 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l--~-~~~~~~-------~~~l---~~~l-~~~Gv~i~~~~~v 265 (498)
++|+|||+|+.|+.+|..|+++ +.+|+++++.+.+. + .+..-+ .+.+ .+.+ ++.|++++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999887 56899999986421 1 011100 0111 1233 5579999999999
Q ss_pred EEEEEeCCeEEEEECC-Ce--EEEcCEEEEecCCCcCCCC
Q 042564 266 KELIKSEEGVKVITDH-GE--EIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 266 ~~i~~~~~~~~v~~~~-g~--~i~~D~vi~a~G~~p~~~~ 302 (498)
.+|..+++.+.+...+ ++ ++.+|.+|+|||.+|+...
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~ 121 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG 121 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCC
Confidence 9998777666655432 22 4689999999999997653
No 272
>PLN02463 lycopene beta cyclase
Probab=98.06 E-value=4.1e-05 Score=78.08 Aligned_cols=97 Identities=24% Similarity=0.363 Sum_probs=76.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-CC-C----------------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-RG-F---------------------------------------- 240 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-~~-~---------------------------------------- 240 (498)
+|+|||+|+.|+-+|..+.+.|.+|.++++.+... +. .
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y~ 109 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPYG 109 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcce
Confidence 79999999999999999999999999999865211 10 0
Q ss_pred ---CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 241 ---DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 241 ---~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..++.+.+.+.+.+.|++++ ...|.++..+++...|++++|+++.+|.||.|+|..+..
T Consensus 110 ~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 110 RVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred eEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence 01223445566667899997 468999988877788889999899999999999987653
No 273
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.06 E-value=2.6e-05 Score=77.54 Aligned_cols=103 Identities=19% Similarity=0.114 Sum_probs=71.0
Q ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC---------CCHHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 198 EELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG---------FDDEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 198 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~---------~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
...+++|+|||+|+.|+++|..|++.|.+|+++++.+.+... .+.+......+.+.+.|++++.++.+..+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 345789999999999999999999999999999998765321 23333444556677779999999887654
Q ss_pred EE----eCCeEEEEE--CCCeEEEcCEEEEecCCC-cCC
Q 042564 269 IK----SEEGVKVIT--DHGEEIVADVVLFATGRA-PNT 300 (498)
Q Consensus 269 ~~----~~~~~~v~~--~~g~~i~~D~vi~a~G~~-p~~ 300 (498)
.. +++...... .++..+.+|.||+|+|.. |..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~ 133 (352)
T PRK12770 95 EPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRK 133 (352)
T ss_pred cccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCc
Confidence 32 111111111 112247899999999984 543
No 274
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.05 E-value=2.4e-05 Score=77.42 Aligned_cols=100 Identities=22% Similarity=0.279 Sum_probs=79.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCCCCC-----------CCHHHHHHHHHHHHhCC-CEEEcCccEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELPLRG-----------FDDEMRAVVARNLEGRG-INLHPRTTIK 266 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~l~~-----------~~~~~~~~l~~~l~~~G-v~i~~~~~v~ 266 (498)
.++++|+|||+-|+..+..|.+.- .+|++|++.+..+-. -+.++...+.+.++..+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 478999999999999999999874 889999998864311 13455566778888666 888876 899
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRL 303 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l 303 (498)
+|+.++. .|++.+++.+++|.+|+|+|..++....
T Consensus 82 ~ID~~~k--~V~~~~~~~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 82 DIDRDAK--KVTLADLGEISYDYLVVALGSETNYFGI 116 (405)
T ss_pred EEcccCC--EEEeCCCccccccEEEEecCCcCCcCCC
Confidence 9976554 5777777789999999999999988654
No 275
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.05 E-value=3.5e-05 Score=79.49 Aligned_cols=99 Identities=24% Similarity=0.409 Sum_probs=66.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+|+++ . ..+ .|
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~------~---~~l---------l~------------------------- 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEM------A---PQL---------LP------------------------- 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEec------C---CCc---------Cc-------------------------
Confidence 5799999999999999999999999999993 1 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCC--EEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPN--EVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~--~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
..+. ++...+.+.+++.||+++.++ +..++.. .+.+.. +|+..++.+|.|++|+|.+|+..
T Consensus 208 ---~~d~------------e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 208 ---GEDE------------DIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred ---cccH------------HHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCCccCCC
Confidence 0010 111223345667899999886 5555432 344433 34335799999999999998765
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 272 ~ 272 (458)
T PRK06912 272 Q 272 (458)
T ss_pred C
Confidence 3
No 276
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.05 E-value=2.3e-05 Score=79.84 Aligned_cols=60 Identities=27% Similarity=0.265 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECC---Ce--EEEcCEEEEecCCCcC
Q 042564 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH---GE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 240 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~i~~D~vi~a~G~~p~ 299 (498)
.|..+.-.......++|-++...+.|+.+..+++...|...| |+ .+.++.||.|+|-...
T Consensus 162 ddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 162 DDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred chHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 355677777777888999999999999999888744555443 33 5889999999996543
No 277
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.04 E-value=3.7e-05 Score=77.99 Aligned_cols=100 Identities=25% Similarity=0.301 Sum_probs=69.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-.|..+++.|.+|+|+|+ . .. +
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~------~---~~-----i------------------------------- 208 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVER------G---DR-----I------------------------------- 208 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEec------C---CC-----C-------------------------------
Confidence 4799999999999999999999999999993 1 11 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.+.+| .++...+...+++.++.+..+. +..+.. +.+.+...+|....+++|++++|+|-+|+..
T Consensus 209 -Lp~~D------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 209 -LPGED------------PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred -CCcCC------------HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 01111 1122334455666788888876 333322 2266766665433788999999999999877
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 276 ~ 276 (454)
T COG1249 276 G 276 (454)
T ss_pred C
Confidence 4
No 278
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.03 E-value=2.1e-05 Score=86.17 Aligned_cols=97 Identities=21% Similarity=0.270 Sum_probs=74.3
Q ss_pred EEEEcCCHHHHHHHHHHHHCC---CcEEEEeeCCCCC-CC--CC---------HHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 204 AVVLGGGYIAVEFASIWRGMG---STVDLLFRKELPL-RG--FD---------DEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 204 v~ViG~G~~g~e~a~~l~~~g---~~V~lv~~~~~~l-~~--~~---------~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
|+|||+|+.|+.+|..+++++ .+|+++++.+.+. .. +. +++.....+.+++.||++++++.|.+|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999988764 5899999877631 10 11 112222356678899999999999999
Q ss_pred EEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 269 IKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 269 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
..+. ..|++.+|+++.+|.+|+|||..|....
T Consensus 81 d~~~--k~V~~~~g~~~~yD~LVlATGs~p~~p~ 112 (785)
T TIGR02374 81 DTDQ--KQVITDAGRTLSYDKLILATGSYPFILP 112 (785)
T ss_pred ECCC--CEEEECCCcEeeCCEEEECCCCCcCCCC
Confidence 7554 3577788888999999999999987654
No 279
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.02 E-value=2.3e-05 Score=86.95 Aligned_cols=93 Identities=12% Similarity=0.055 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIK 270 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 270 (498)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ +|. ++.++.+...+.+++.||++++++.+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 3689999999999999999999999999999987643 222 567787777888899999999986542
Q ss_pred eCCeEEEEECCCeEEEcCEEEEecCCC-cCC
Q 042564 271 SEEGVKVITDHGEEIVADVVLFATGRA-PNT 300 (498)
Q Consensus 271 ~~~~~~v~~~~g~~i~~D~vi~a~G~~-p~~ 300 (498)
..+++++.....+|.|++|||.. |..
T Consensus 381 ----~dit~~~l~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 381 ----KTATLEDLKAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred ----cEEeHHHhccccCCEEEEeCCCCCCCc
Confidence 12455555456799999999985 543
No 280
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.01 E-value=2.8e-05 Score=72.30 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-----EEEEECCCeEEEcCEEEEecCCCcCCCCCCcccCCceeCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEG-----VKVITDHGEEIVADVVLFATGRAPNTKRLNLKAVGVEVDQ 314 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-----~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~ 314 (498)
+...+-+.++..|-.+.+|-+++.+....+. +.|.-..++++.+..++.|+|.....- .+.+|.++++
T Consensus 198 v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~---aa~sgc~~dP 270 (453)
T KOG2665|consen 198 VTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRC---AALSGCELDP 270 (453)
T ss_pred HHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHH---HHHhCCCCCC
Confidence 4445556688889999999999998765543 333334467899999999999876543 2344555554
No 281
>PTZ00367 squalene epoxidase; Provisional
Probab=98.00 E-value=1.3e-05 Score=84.06 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr 64 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcc
Confidence 468999999999999999999999999999995
No 282
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.00 E-value=9.7e-05 Score=77.99 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=76.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC--------C---CC----CCHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP--------L---RG----FDDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~--------l---~~----~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
..|+|||||+.|+.+|..+++.|.+|+++++...- . +. ..+++.+.+.+.+++.|++++ +..|.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 47999999999999999999999999999975420 0 11 124567777788888899986 56788
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.+..+++...+.+.++ .+.+|.+|+|||.+|....
T Consensus 84 ~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ 118 (555)
T TIGR03143 84 DVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLG 118 (555)
T ss_pred EEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCC
Confidence 8876655556666666 5889999999999987643
No 283
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.00 E-value=4.5e-05 Score=78.06 Aligned_cols=98 Identities=23% Similarity=0.293 Sum_probs=66.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+|+|||||+.|+.+|..|++.|.+|+++++ .+ .+.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~------~~---~~~----------------------------------- 173 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHR------SE---RIL----------------------------------- 173 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEC------Cc---ccC-----------------------------------
Confidence 5799999999999999999999999999993 11 100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
...++ . .+...+...+++.||+++.+. +..++.+...+...+|+ ++.+|.||+|+|.+|..+
T Consensus 174 -~~~~~-~-----------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 174 -NKLFD-E-----------EMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGG--VYQADMVILATGIKPNSE 236 (427)
T ss_pred -ccccC-H-----------HHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCC--EEEeCEEEECCCccCCHH
Confidence 00000 0 011223344567799999875 55565544333445655 799999999999988754
No 284
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.99 E-value=6.2e-05 Score=77.20 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHhCCcEEEEeEEEEE--eCC-E-EEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 123 RLNGIYKRLLSNAGVKLYEGEGKIV--GPN-E-VEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 123 ~~~~~~~~~~~~~gv~~~~~~~~~i--~~~-~-~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
.+...+.+...+.|++++.++++.+ +++ . ..|.+.+|+ ++++|.+|=|||....+
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~--~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGR--TIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSE--EEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCC--EEEEeEEEECCCccchh
Confidence 4455566666778999999986543 333 3 356677765 89999999999976544
No 285
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=7.6e-06 Score=76.41 Aligned_cols=43 Identities=33% Similarity=0.517 Sum_probs=39.4
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIR 74 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~ 74 (498)
++|++|||+|.+|+..|..|++.|++|+|||| +..+||.|.-.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvek---------R~HIGGNaYde 43 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEK---------RNHIGGNAYDE 43 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEec---------cccCCCccccc
Confidence 48999999999999999999999999999997 88899999643
No 286
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.98 E-value=2.2e-05 Score=80.96 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=70.5
Q ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------CC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 199 ELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------RG--FDDEMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 199 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
..+++|+|||+|+.|+++|..|.+.|.+|+++++.+.+. +. .+.++.....+.+++.||++++++.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-- 215 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-- 215 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--
Confidence 346899999999999999999999999999999877542 22 4667778888888999999999876521
Q ss_pred EeCCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 270 KSEEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 270 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
.+.+.+. .+.+|.||+|||..
T Consensus 216 ------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 ------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred ------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222222 26799999999986
No 287
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.97 E-value=4.6e-05 Score=78.81 Aligned_cols=100 Identities=33% Similarity=0.437 Sum_probs=68.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+++++ .+ .+ .|
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~------~~---~~---------l~------------------------- 209 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEA------LP---RI---------LP------------------------- 209 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEc------CC---Cc---------CC-------------------------
Confidence 5799999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCC-CceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLD-GTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~-g~~~~~~~d~liiAtG~~p~~ 179 (498)
.++. .+...+.+.+++.|++++.+. +..++ .+.+.+...+ ++..++.+|.+|+|+|.+|+.
T Consensus 210 ---~~~~------------~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 210 ---GEDK------------EISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred ---cCCH------------HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 0110 111223345667799999885 55554 3355565444 333579999999999999876
Q ss_pred CC
Q 042564 180 AP 181 (498)
Q Consensus 180 p~ 181 (498)
..
T Consensus 275 ~~ 276 (462)
T PRK06416 275 EN 276 (462)
T ss_pred CC
Confidence 54
No 288
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.97 E-value=6.9e-06 Score=79.00 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=36.8
Q ss_pred CCccEEEECCChhHHHHHHHHHh------CCCcEEEEccCCCCCCCCcCCCccccccccCc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN------FGAKVGICELPFHPISSEVIGGVGGTCVIRGC 76 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~------~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~ 76 (498)
..+||+|||||||||+||++|.+ ...+|+|+|| ...+||..+--.|
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEK---------aa~~GghtlSGav 126 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEK---------AAEVGGHTLSGAV 126 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEee---------ccccCCceeccee
Confidence 36899999999999999999987 3569999996 5667777543333
No 289
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.97 E-value=6.5e-05 Score=75.53 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=71.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC--CcEEEEeeCCCCC---CCCC---------HHHHH-HHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMG--STVDLLFRKELPL---RGFD---------DEMRA-VVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~l---~~~~---------~~~~~-~l~~~l~~~Gv~i~~~~~v~ 266 (498)
++++|||+|+.|+.+|..+++.+ .+|+++.+.+... +.+. .++.. ...+.+++.|++++.++.|.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 58999999999999999998764 5799998766421 1111 12221 13345677899999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
++..+.. .+.+ +++.+.+|.+|+|||.+|....
T Consensus 83 ~id~~~~--~v~~-~~~~~~yd~LVlATG~~~~~p~ 115 (377)
T PRK04965 83 DIDAEAQ--VVKS-QGNQWQYDKLVLATGASAFVPP 115 (377)
T ss_pred EEECCCC--EEEE-CCeEEeCCEEEECCCCCCCCCC
Confidence 9976544 3444 5668999999999999987654
No 290
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.96 E-value=9.1e-06 Score=74.07 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTC 71 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~ 71 (498)
.+|+|||+|+||++||..|+..|.+|+|+|| ..++||..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eK---------g~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEK---------GRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEc---------CCCcccch
Confidence 3799999999999999999999999999997 56677764
No 291
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.95 E-value=6.4e-05 Score=77.83 Aligned_cols=99 Identities=25% Similarity=0.354 Sum_probs=66.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+|+|+ . ..+ .|
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~------~---~~~---------l~------------------------- 209 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEF------L---DRA---------LP------------------------- 209 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEec------C---CCc---------CC-------------------------
Confidence 4799999999999999999999999999993 1 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEe--CCCceEEEEcCeEEEcCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQ--LDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~--~~g~~~~~~~d~liiAtG~~p~ 178 (498)
..+. + +...+.+.+++.||+++.++ +..++. ..+.+.. .+|+..++++|.|++|+|.+|+
T Consensus 210 ---~~d~-~-----------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 210 ---NEDA-E-----------VSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred ---ccCH-H-----------HHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 1110 0 11223345667899999885 444532 2344433 2554457999999999999887
Q ss_pred CC
Q 042564 179 RA 180 (498)
Q Consensus 179 ~p 180 (498)
..
T Consensus 275 ~~ 276 (466)
T PRK07818 275 VE 276 (466)
T ss_pred CC
Confidence 65
No 292
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.94 E-value=3e-05 Score=79.65 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=70.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CC--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LR--GFDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++ .++.++.....+.+++.||+++++..+..
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---- 208 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK---- 208 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC----
Confidence 479999999999999999999999999999987644 12 25667777777888899999999975411
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCC-CcCCC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGR-APNTK 301 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~~ 301 (498)
.+.+.+. ...+|.||+|||. .|...
T Consensus 209 ----~v~~~~~-~~~yd~viiAtGa~~p~~~ 234 (449)
T TIGR01316 209 ----TATLEEL-FSQYDAVFIGTGAGLPKLM 234 (449)
T ss_pred ----cCCHHHH-HhhCCEEEEeCCCCCCCcC
Confidence 1333322 2468999999997 56543
No 293
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.94 E-value=1.3e-05 Score=72.85 Aligned_cols=100 Identities=22% Similarity=0.314 Sum_probs=72.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC---CCCCH-----------HHH--H--HHHHHHHhCCCEEEcCcc
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL---RGFDD-----------EMR--A--VVARNLEGRGINLHPRTT 264 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l---~~~~~-----------~~~--~--~l~~~l~~~Gv~i~~~~~ 264 (498)
+|+|||+|+.|+.+|..|.+.+.+|+++++.+... ..... ... + .+.+.+...+++++.++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 58999999999999999999999999997655210 00000 011 0 333445678999999999
Q ss_pred EEEEEEeCCe-----EEE---EECCCeEEEcCEEEEecCCCcCCCC
Q 042564 265 IKELIKSEEG-----VKV---ITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 265 v~~i~~~~~~-----~~v---~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+.++...... ..+ ...++.++.+|.+|+|+|..|+...
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 126 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN 126 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence 9999877663 122 2345668999999999999887654
No 294
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.94 E-value=8.3e-05 Score=76.94 Aligned_cols=97 Identities=24% Similarity=0.259 Sum_probs=67.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+|+++ . ..+.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~------~---~~~l----------------------------------- 211 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINT------R---DRLL----------------------------------- 211 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEec------C---CCcC-----------------------------------
Confidence 5799999999999999999999999999993 1 1100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+.++. .+...+.+.+++.|++++.++ +..++ .+.+.+...+|+ ++++|.+++|+|.+|+..
T Consensus 212 --~~~d~------------~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 212 --SFLDD------------EISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGK--KIKADCLLYANGRTGNTD 275 (461)
T ss_pred --CcCCH------------HHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCC--EEEeCEEEEeecCCcccc
Confidence 00110 011223344566799999875 44443 455666666664 799999999999998765
No 295
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.93 E-value=1.1e-05 Score=84.16 Aligned_cols=33 Identities=36% Similarity=0.547 Sum_probs=30.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.++||||||+| +|++||++|++.|.+|+||||
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk 37 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEA 37 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEec
Confidence 347899999999 999999999999999999995
No 296
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00058 Score=65.81 Aligned_cols=99 Identities=22% Similarity=0.263 Sum_probs=75.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCCC-----------CCC-----CCHHHHHHHHHHHHhCCCEEEcCcc
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKELP-----------LRG-----FDDEMRAVVARNLEGRGINLHPRTT 264 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~~-----------l~~-----~~~~~~~~l~~~l~~~Gv~i~~~~~ 264 (498)
-.|+|||+|+.|+-.|-.+.+.+.+ +.+++....- .|. ..+++.+.+.+.....|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 3799999999999999999999988 5555543110 121 3456777777777788999887 57
Q ss_pred EEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 265 IKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 265 v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
|.+++..++...|.+.+++ +.++.||+|+|..+....
T Consensus 83 v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 83 VEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLG 119 (305)
T ss_pred EEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCC
Confidence 7777765556788888887 999999999998776654
No 297
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.93 E-value=9.4e-06 Score=84.61 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..+.+.+.+.+++.|++++++++|.+|..+++. ..|.+.+|+++.+|.||+++|.....
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~ 288 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTF 288 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence 568888999999999999999999999876554 66778888889999999999865433
No 298
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.93 E-value=6.3e-05 Score=82.63 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=68.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ .|. ++.++...-.+.+++.||++++++.+ .+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di--- 614 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL--- 614 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE---
Confidence 579999999999999999999999999999987643 222 34455555567778889999999766 22
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.....+|.||+|||.++..
T Consensus 615 ------~le~L~~~gYDaVILATGA~~~~ 637 (1019)
T PRK09853 615 ------TVEQLKNEGYDYVVVAIGADKNG 637 (1019)
T ss_pred ------EhhhheeccCCEEEECcCCCCCC
Confidence 22233345689999999998643
No 299
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.93 E-value=9.8e-06 Score=84.52 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCC-----eEEEcCEEEEecCCC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHG-----EEIVADVVLFATGRA 297 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g-----~~i~~D~vi~a~G~~ 297 (498)
-..+.+.+.+.+++.|++|+++++|++|..+++. ..+.+.++ +++.+|.||+++...
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 4568888999999999999999999999877664 34444443 578999999998753
No 300
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.92 E-value=9.4e-05 Score=76.09 Aligned_cols=97 Identities=20% Similarity=0.304 Sum_probs=67.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+++++ +. .+ .
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~----------~~----~~----l-------------------------- 202 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYR----------GE----LI----L-------------------------- 202 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEe----------CC----CC----C--------------------------
Confidence 4799999999999999999999999999993 11 00 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+.++. .+...+...+++.|++++.++ +..++ ++.+.+...+++ .+.+|.+++|+|..|+..
T Consensus 203 --~~~d~------------~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 203 --RGFDD------------DMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGE--EIVADVVLFATGRSPNTK 266 (446)
T ss_pred --cccCH------------HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCc--EeecCEEEEeeCCCcCCC
Confidence 00110 011123344667899999875 44553 345666665654 799999999999988764
No 301
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.92 E-value=0.00013 Score=73.63 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=76.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC---------------------CC--------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR---------------------GF-------------------- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~---------------------~~-------------------- 240 (498)
-+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.. .+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4799999999999999999999999999998754311 00
Q ss_pred ------------------------CHHHHHHHHHHHHhCC-CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC
Q 042564 241 ------------------------DDEMRAVVARNLEGRG-INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295 (498)
Q Consensus 241 ------------------------~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G 295 (498)
...+.+.+.+.+++.| ++++ +..+.++..+++.+.+++.+|+++.+|.||.|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG 164 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADG 164 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCC
Confidence 0122334556666776 9988 8899999877777888888888899999999999
Q ss_pred CCcCC
Q 042564 296 RAPNT 300 (498)
Q Consensus 296 ~~p~~ 300 (498)
..+..
T Consensus 165 ~~S~v 169 (388)
T PRK07608 165 AHSWV 169 (388)
T ss_pred CCchH
Confidence 87654
No 302
>PRK06753 hypothetical protein; Provisional
Probab=97.92 E-value=0.00015 Score=72.85 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=73.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-----CCHHH---------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-----FDDEM--------------------------------- 244 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-----~~~~~--------------------------------- 244 (498)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+-.. +.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6999999999999999999999999999987642100 00000
Q ss_pred ---------------HHHHHHHHHhC--CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 245 ---------------RAVVARNLEGR--GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 245 ---------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
...+.+.|.+. +.++++++++++++.+++++.+++++|+++.+|.||-|.|.++..-
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHH
Confidence 01122333222 4578999999999877777888899999999999999999776553
No 303
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.91 E-value=0.00014 Score=73.29 Aligned_cols=97 Identities=20% Similarity=0.377 Sum_probs=75.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCCCCC---------CC-------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELPLRG---------FD------------------------------- 241 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~l~~---------~~------------------------------- 241 (498)
.|+|||+|+.|+-+|..|.+.| .+|+++++.+.+-+. +.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 4899999999999999999999 999999986421100 00
Q ss_pred ------------------------HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 242 ------------------------DEMRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 242 ------------------------~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.++.+.+.+.+.+ .|+++++++.|+++..+++++.+.+++|+++.+|.||.|.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGA 160 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCC
Confidence 1122334455555 499999999999998877788888888888999999999998
Q ss_pred CcC
Q 042564 297 APN 299 (498)
Q Consensus 297 ~p~ 299 (498)
...
T Consensus 161 ~S~ 163 (382)
T TIGR01984 161 NSK 163 (382)
T ss_pred ChH
Confidence 754
No 304
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.91 E-value=3.8e-05 Score=78.26 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHHhCC-CcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFG-AKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek 54 (498)
+|+|||||++|+++|..|++.| .+|+|+|+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er 32 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEA 32 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEec
Confidence 6999999999999999999988 59999995
No 305
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.91 E-value=0.00017 Score=73.12 Aligned_cols=31 Identities=35% Similarity=0.275 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.+|+||||||+|+++|+.|++.|++|+|+|+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 5799999999999999999999999999995
No 306
>PRK08244 hypothetical protein; Provisional
Probab=97.91 E-value=0.00014 Score=76.01 Aligned_cols=99 Identities=18% Similarity=0.310 Sum_probs=76.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC------------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG------------------------------------------ 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~------------------------------------------ 239 (498)
-.|+|||+|+.|+-+|..|.+.|.+|+++++.+...+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999986521000
Q ss_pred -C--------------CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC--CC-eEEEcCEEEEecCCCcCC
Q 042564 240 -F--------------DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD--HG-EEIVADVVLFATGRAPNT 300 (498)
Q Consensus 240 -~--------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~--~g-~~i~~D~vi~a~G~~p~~ 300 (498)
+ -..+.+.+.+.+++.|+++++++++.++..+++++.+.+. +| +++.+|.||.|.|.++..
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 0 0123444566677789999999999999887777666653 45 479999999999998754
No 307
>PRK07190 hypothetical protein; Provisional
Probab=97.91 E-value=0.00017 Score=74.85 Aligned_cols=99 Identities=18% Similarity=0.293 Sum_probs=77.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC----------------------------------------CC-
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR----------------------------------------GF- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~----------------------------------------~~- 240 (498)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+.. .+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4799999999999999999999999999988753100 00
Q ss_pred ----------C------------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 241 ----------D------------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ----------~------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+ ..+.+.+.+.+++.|++++.+++|+++..+++++.+.+.+|+++.++.||.|.|.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 0 012223455667789999999999999888888777778888899999999999876
Q ss_pred CC
Q 042564 299 NT 300 (498)
Q Consensus 299 ~~ 300 (498)
..
T Consensus 166 ~v 167 (487)
T PRK07190 166 FV 167 (487)
T ss_pred HH
Confidence 44
No 308
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.88 E-value=0.0001 Score=75.52 Aligned_cols=27 Identities=41% Similarity=0.427 Sum_probs=26.1
Q ss_pred EECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 28 VIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 28 IIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|||+|.||++||++|++.|.+|+|+||
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK 27 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEA 27 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeC
Confidence 799999999999999999999999995
No 309
>PLN02576 protoporphyrinogen oxidase
Probab=97.88 E-value=1.3e-05 Score=83.68 Aligned_cols=41 Identities=37% Similarity=0.436 Sum_probs=36.7
Q ss_pred CccEEEECCChhHHHHHHHHHhC-CCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANF-GAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
++||+|||||++||+||++|++. |.+|+|+|+ ...+||.|.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa---------~~rvGGr~~ 53 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEA---------RDRVGGNIT 53 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEec---------CCCCCCcee
Confidence 46999999999999999999999 999999996 567888864
No 310
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.87 E-value=0.00011 Score=76.04 Aligned_cols=100 Identities=26% Similarity=0.330 Sum_probs=66.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+++ .+ .+ .|
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~------~~---~~---------l~------------------------- 203 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQR------SD---RL---------LP------------------------- 203 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc------CC---cC---------CC-------------------------
Confidence 5899999999999999999999999999993 11 10 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeC-CCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQL-DGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~-~g~~~~~~~d~liiAtG~~p~~ 179 (498)
.++. .+...+...+++.||+++.++ +..++ .+.+.+... ++...++++|.+++|+|.+|+.
T Consensus 204 ---~~d~------------~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 204 ---REEP------------EISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred ---ccCH------------HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 0110 011223345567799999886 55553 233444432 2223579999999999999887
Q ss_pred CC
Q 042564 180 AP 181 (498)
Q Consensus 180 p~ 181 (498)
..
T Consensus 269 ~~ 270 (463)
T TIGR02053 269 DG 270 (463)
T ss_pred CC
Confidence 63
No 311
>PRK06116 glutathione reductase; Validated
Probab=97.87 E-value=0.0001 Score=75.92 Aligned_cols=98 Identities=19% Similarity=0.277 Sum_probs=68.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ ... . +
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~----------~~~----~----l-------------------------- 203 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVR----------GDA----P----L-------------------------- 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEec----------CCC----C----c--------------------------
Confidence 5899999999999999999999999999993 110 0 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC---CEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP---NEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~---~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
..++ . .+...+...+++.|++++.++ +..++. ..+.+...+|+ ++.+|.+++|+|.+|+.
T Consensus 204 --~~~~-~-----------~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~--~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 204 --RGFD-P-----------DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGE--TLTVDCLIWAIGREPNT 267 (450)
T ss_pred --cccC-H-----------HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCc--EEEeCEEEEeeCCCcCC
Confidence 0000 0 011223345567899999875 555532 23666666664 78999999999999876
Q ss_pred CC
Q 042564 180 AP 181 (498)
Q Consensus 180 p~ 181 (498)
..
T Consensus 268 ~~ 269 (450)
T PRK06116 268 DG 269 (450)
T ss_pred CC
Confidence 53
No 312
>PRK06370 mercuric reductase; Validated
Probab=97.87 E-value=0.00012 Score=75.69 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=65.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+|+++ . ..+ .|
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~------~---~~~---------l~------------------------- 208 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIER------G---PRL---------LP------------------------- 208 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEc------C---CCC---------Cc-------------------------
Confidence 5899999999999999999999999999993 1 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEeC-CCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQL-DGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~~-~g~~~~~~~d~liiAtG~~p~~ 179 (498)
..+. .+...+...+++.|++++.++ +..++. +.+.+... ++...++.+|.||+|+|.+|+.
T Consensus 209 ---~~~~------------~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 209 ---REDE------------DVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred ---ccCH------------HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 0000 011223345667899999875 555543 23333321 1223479999999999999886
Q ss_pred C
Q 042564 180 A 180 (498)
Q Consensus 180 p 180 (498)
.
T Consensus 274 ~ 274 (463)
T PRK06370 274 D 274 (463)
T ss_pred C
Confidence 5
No 313
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.87 E-value=0.00014 Score=68.81 Aligned_cols=53 Identities=26% Similarity=0.277 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 246 AVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 246 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+.+++.-..-+-.+.+++.|.++..-.+++.++..+|+.-.+|.||+|+-..-
T Consensus 221 ~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dq 273 (447)
T COG2907 221 AYVQRLAADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQ 273 (447)
T ss_pred HHHHHHhccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHH
Confidence 33444333334458899999999998899999988999889999999975433
No 314
>PLN02507 glutathione reductase
Probab=97.86 E-value=0.00014 Score=75.76 Aligned_cols=98 Identities=22% Similarity=0.251 Sum_probs=68.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-.|..+++.|.+|+|+++ .+ .+ +
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~------~~---~~---------l-------------------------- 239 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFR------KE---LP---------L-------------------------- 239 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEe------cC---Cc---------C--------------------------
Confidence 5799999999999999999999999999993 11 10 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+.++. .+...+.+.+++.||+++.++ +..++ .+.+.+...+|+ ++.+|.+++|+|.+|+..
T Consensus 240 --~~~d~------------~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~--~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 240 --RGFDD------------EMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGE--EFVADVVLFATGRAPNTK 303 (499)
T ss_pred --cccCH------------HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCc--EEEcCEEEEeecCCCCCC
Confidence 00110 111223344567899999885 44443 345666666654 799999999999998865
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 304 ~ 304 (499)
T PLN02507 304 R 304 (499)
T ss_pred C
Confidence 3
No 315
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.86 E-value=2.4e-05 Score=78.32 Aligned_cols=31 Identities=35% Similarity=0.402 Sum_probs=29.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.||+|||||++|+.+|..|++.|.+|+|+|+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~ 31 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEM 31 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 3799999999999999999999999999994
No 316
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.86 E-value=0.00012 Score=75.60 Aligned_cols=98 Identities=24% Similarity=0.334 Sum_probs=68.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ . ..+ .
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~------~---~~~---------l-------------------------- 213 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSS------R---DRV---------L-------------------------- 213 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEc------C---CcC---------C--------------------------
Confidence 4799999999999999999999999999993 1 110 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+..+. . ....+...+++.||+++.++ +..+ +.+.+.+...+|+ ++++|.+++|+|.+|+..
T Consensus 214 --~~~d~-~-----------~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~--~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 214 --PGEDA-D-----------AAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGR--TVEGSHALMAVGSVPNTA 277 (466)
T ss_pred --CCCCH-H-----------HHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCc--EEEecEEEEeecCCcCCC
Confidence 00111 0 11223445667899999875 4445 3455666666664 799999999999998865
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 278 ~ 278 (466)
T PRK07845 278 G 278 (466)
T ss_pred C
Confidence 3
No 317
>PLN02268 probable polyamine oxidase
Probab=97.85 E-value=1.6e-05 Score=81.59 Aligned_cols=48 Identities=25% Similarity=0.483 Sum_probs=39.4
Q ss_pred HHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 248 VARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
+.+.+.+ ++++++++.|++|...++++.|++.+|+++.+|.||+|+..
T Consensus 203 l~~~l~~-~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 203 VINTLAK-GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred HHHHHhc-cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 3344433 67899999999999888888888888888999999999854
No 318
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.85 E-value=3.2e-05 Score=73.92 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+||+|||||.+|.+.|+.|++.|.+|.+||+
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIER 76 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIER 76 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEec
Confidence 468999999999999999999999999999995
No 319
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.84 E-value=0.00012 Score=74.50 Aligned_cols=96 Identities=31% Similarity=0.403 Sum_probs=67.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||+|++|+.+|..|++.|++|+++|+ ...+++..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~---------~~~~~~~~-------------------------------- 175 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEA---------ADRLGGQL-------------------------------- 175 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEc---------ccccchhh--------------------------------
Confidence 6899999999999999999999999999993 22222110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEE--E---EEeCCCceEEEEcCeEEEcCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEV--E---VTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~--~---v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+. ..+...+...++..||+++.+. ...++.+.. . +...++. .+.+|.+++++|.+|
T Consensus 176 ----------~~------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~g~~p 237 (415)
T COG0446 176 ----------LD------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE--EIKADLVIIGPGERP 237 (415)
T ss_pred ----------hh------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc--EEEeeEEEEeecccc
Confidence 00 2333445566777899998876 455554421 1 3333443 899999999999998
Q ss_pred C
Q 042564 178 Q 178 (498)
Q Consensus 178 ~ 178 (498)
+
T Consensus 238 ~ 238 (415)
T COG0446 238 N 238 (415)
T ss_pred c
Confidence 5
No 320
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.84 E-value=6e-05 Score=77.81 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CC--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LR--GFDDEMRAVVARNLEGRGINLHPRTTIKELIK 270 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 270 (498)
..++|+|||+|+.|+.+|..+++.|.+|+++++.+.+ ++ .++.++.....+.+++.|++++.++.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 3579999999999999999999999999999987653 12 256777777778889999999999866321
Q ss_pred eCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 271 SEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 271 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
+.+.+ ....+|.||+|+|..+..
T Consensus 218 ------~~~~~-~~~~~D~vilAtGa~~~~ 240 (467)
T TIGR01318 218 ------ISLDD-LLEDYDAVFLGVGTYRSM 240 (467)
T ss_pred ------cCHHH-HHhcCCEEEEEeCCCCCC
Confidence 11111 124699999999998754
No 321
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.84 E-value=0.00015 Score=75.30 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=66.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..+++.|.+|+|+++ .+ .+.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~------~~---~~l----------------------------------- 219 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEA------LP---AFL----------------------------------- 219 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeC------CC---ccC-----------------------------------
Confidence 5899999999999999999999999999993 11 100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCC--CceEEEEcCeEEEcCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLD--GTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~--g~~~~~~~d~liiAtG~~p~ 178 (498)
+..+ .+ +...+...+++.|++++.++ +..++ ...+.+...+ |+...+++|.|++|+|.+|+
T Consensus 220 --~~~d-~~-----------~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 220 --AAAD-EQ-----------VAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred --CcCC-HH-----------HHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 0001 01 11112234556799999875 55554 3345554332 44457999999999999998
Q ss_pred CCC
Q 042564 179 RAP 181 (498)
Q Consensus 179 ~p~ 181 (498)
...
T Consensus 286 ~~~ 288 (475)
T PRK06327 286 TDG 288 (475)
T ss_pred CCC
Confidence 763
No 322
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.84 E-value=1.6e-05 Score=81.93 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=34.9
Q ss_pred EEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 258 NLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 258 ~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
+++++++|++|..+++++.|++.+|+++.+|.||+|+..
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence 799999999999887778888888989999999999874
No 323
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=0.00034 Score=74.02 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=33.6
Q ss_pred hHHHHHHHHhCCcEEEEeE-EE-EE-e-CCEE---EE-EeCCCceEEEEcCeEEEcCCCCC
Q 042564 125 NGIYKRLLSNAGVKLYEGE-GK-IV-G-PNEV---EV-TQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 125 ~~~~~~~~~~~gv~~~~~~-~~-~i-~-~~~~---~v-~~~~g~~~~~~~d~liiAtG~~p 177 (498)
...+.+...+.+|+++.++ +. .+ + .+.+ .+ ...+|+...+.++.||||||.-.
T Consensus 129 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 129 LHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 3334444556799999886 33 33 3 3332 22 23467667889999999999654
No 324
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.82 E-value=0.00014 Score=74.78 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=67.1
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..+++.|.+|+|+++ .+ .+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~------~~---~il----------------------------------- 202 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIR------HE---RVL----------------------------------- 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEec------CC---CCC-----------------------------------
Confidence 5899999999999999999999999999993 11 100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC---CEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP---NEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~---~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
..+|. .+...+...+++.||+++.++ +..+.. +...+..++|+ ..+.+|.+++|+|.+|+.
T Consensus 203 --~~~d~------------~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~-~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 203 --RSFDS------------MISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGK-SIDDVDELIWAIGRKPNT 267 (450)
T ss_pred --cccCH------------HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCc-EEEEcCEEEEeeCCCcCc
Confidence 00110 011223344566899999875 444432 23556665552 479999999999999886
Q ss_pred C
Q 042564 180 A 180 (498)
Q Consensus 180 p 180 (498)
.
T Consensus 268 ~ 268 (450)
T TIGR01421 268 K 268 (450)
T ss_pred c
Confidence 5
No 325
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.82 E-value=0.00016 Score=71.63 Aligned_cols=93 Identities=17% Similarity=0.306 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCe-EEEEEC-----CCeEEEcCEEEEecCCCcCCCCCCcccCCceeC-
Q 042564 242 DEMRAVVARNLEGR-GINLHPRTTIKELIKSEEG-VKVITD-----HGEEIVADVVLFATGRAPNTKRLNLKAVGVEVD- 313 (498)
Q Consensus 242 ~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~-~~v~~~-----~g~~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~- 313 (498)
..+.+.+.+.+++. |++++++++|++|.+.+++ ..|.+. +..++.++.|++..|-..-.- ++.+||+-.
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~L---Lqksgi~e~~ 257 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPL---LQKSGIPEGK 257 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHH---HHHcCChhhc
Confidence 45677777778777 9999999999999998777 666552 234799999999999764332 567777422
Q ss_pred C-CCCeEcCCCCCCCCC--------CeEEeccc
Q 042564 314 Q-TGAVKVDENSRTNVP--------SIWAVGDV 337 (498)
Q Consensus 314 ~-~g~i~vd~~~~t~~~--------~iya~GD~ 337 (498)
. .|+++--.+++|+.| -||..-.+
T Consensus 258 gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 258 GYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred ccCCCcccceEEecCCHHHHHHhcceeeeeCCC
Confidence 1 233333356676544 36766544
No 326
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.81 E-value=7e-05 Score=76.85 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH--CCCcEEEEeeCCCCC--------CC--CCHHHHHHHHHHHHhCCCEEEcCccEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRG--MGSTVDLLFRKELPL--------RG--FDDEMRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~--~g~~V~lv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ....+...+.+.++..+|+++.|..+-.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46799999999999999999986 799999999988653 21 1223445566677778999988755521
Q ss_pred EEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 268 LIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 268 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
.+.+++-. ..+|.||+|+|..+.
T Consensus 105 --------dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 --------DVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred --------cccHHHHh-hhCCEEEEecCCCCC
Confidence 13333322 468999999999864
No 327
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=0.00016 Score=74.71 Aligned_cols=99 Identities=24% Similarity=0.311 Sum_probs=65.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..+++.|.+|+|+|+ .+ .+ .
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~------~~---~i---------l-------------------------- 210 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEY------LD---RI---------C-------------------------- 210 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeC------CC---CC---------C--------------------------
Confidence 5799999999999999999999999999993 11 10 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--CEEEEEe---CCCceEEEEcCeEEEcCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--NEVEVTQ---LDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~~~~v~~---~~g~~~~~~~d~liiAtG~~p 177 (498)
+.++. + +...+.+.+++.||+++.++ +..+.. +.+.+.. .+|+...+.+|.|++|+|.+|
T Consensus 211 --~~~d~-~-----------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 211 --PGTDT-E-----------TAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred --CCCCH-H-----------HHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence 00110 0 11123344566799999885 445532 3444432 234345799999999999988
Q ss_pred CCC
Q 042564 178 QRA 180 (498)
Q Consensus 178 ~~p 180 (498)
+..
T Consensus 277 n~~ 279 (466)
T PRK06115 277 YTQ 279 (466)
T ss_pred ccc
Confidence 754
No 328
>PLN02568 polyamine oxidase
Probab=97.81 E-value=2.3e-05 Score=81.95 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATG 295 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G 295 (498)
.+.+.+.+.+. +-.++++++|++|...++++.|++.+|+++.+|.||+++.
T Consensus 243 ~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 243 SVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 34444544442 2368999999999988888899999998899999999986
No 329
>PRK12831 putative oxidoreductase; Provisional
Probab=97.80 E-value=6.6e-05 Score=77.39 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=68.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCH-HHHHHHHHHHHhCCCEEEcCccEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDD-EMRAVVARNLEGRGINLHPRTTIKELI 269 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~-~~~~~l~~~l~~~Gv~i~~~~~v~~i~ 269 (498)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++. ++. ++.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 3579999999999999999999999999999986542 121 222 3666666788889999999975521
Q ss_pred EeCCeEEEEECCC-eEEEcCEEEEecCC-CcCC
Q 042564 270 KSEEGVKVITDHG-EEIVADVVLFATGR-APNT 300 (498)
Q Consensus 270 ~~~~~~~v~~~~g-~~i~~D~vi~a~G~-~p~~ 300 (498)
.+.+.+. +.+.+|.||+|||. .|..
T Consensus 217 ------~v~~~~~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 ------TVTIDELLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred ------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence 1222222 23569999999998 4644
No 330
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=1.9e-05 Score=77.34 Aligned_cols=34 Identities=32% Similarity=0.504 Sum_probs=31.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...|||||||||.||+.||..+++.|.+.+|+-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 4579999999999999999999999999999984
No 331
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.80 E-value=0.00024 Score=72.44 Aligned_cols=99 Identities=13% Similarity=0.238 Sum_probs=73.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC----CC---CC---------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL----RG---FD--------------------------------- 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l----~~---~~--------------------------------- 241 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+..- .. +.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 98 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDADY 98 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCCC
Confidence 479999999999999999999999999999765310 00 00
Q ss_pred ----------------------HHHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCeEEEEECC-C--eEEEcCEEEEecC
Q 042564 242 ----------------------DEMRAVVARNLEGR-GINLHPRTTIKELIKSEEGVKVITDH-G--EEIVADVVLFATG 295 (498)
Q Consensus 242 ----------------------~~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~v~~~~-g--~~i~~D~vi~a~G 295 (498)
..+.+.+.+.+.+. |+++++++.+.+++.+++.+.+++.+ + .++.+|+||.|.|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG 178 (415)
T PRK07364 99 PGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADG 178 (415)
T ss_pred CceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCC
Confidence 11122233444443 79999999999998777777777753 2 3699999999999
Q ss_pred CCcCC
Q 042564 296 RAPNT 300 (498)
Q Consensus 296 ~~p~~ 300 (498)
..+..
T Consensus 179 ~~S~v 183 (415)
T PRK07364 179 ARSPI 183 (415)
T ss_pred CCchh
Confidence 87765
No 332
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=2.3e-05 Score=78.59 Aligned_cols=39 Identities=31% Similarity=0.398 Sum_probs=36.0
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
+|+|+|||.|||+||++|++.|++|+|+|. ...+||-|.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea---------~~~~GGk~~ 40 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEA---------RDRLGGKVA 40 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEec---------cCccCceee
Confidence 699999999999999999999999999995 677888874
No 333
>PRK07846 mycothione reductase; Reviewed
Probab=97.78 E-value=0.00019 Score=73.86 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=64.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+.+|..|++.|.+|+|+++ . ..+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~------~---~~l------------------------------------ 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNR------S---GRL------------------------------------ 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEc------C---Ccc------------------------------------
Confidence 5899999999999999999999999999993 1 110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.+.++.. + ...+...+ +.+++++.+. +..++ .+.+.+...+|+ ++.+|.|++|+|.+|+..
T Consensus 202 -l~~~d~~-~-----------~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~--~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 202 -LRHLDDD-I-----------SERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGS--TVEADVLLVATGRVPNGD 265 (451)
T ss_pred -ccccCHH-H-----------HHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCc--EeecCEEEEEECCccCcc
Confidence 0001110 0 01111222 3468888765 44453 335566666654 799999999999998875
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 266 ~ 266 (451)
T PRK07846 266 L 266 (451)
T ss_pred c
Confidence 4
No 334
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.77 E-value=0.00029 Score=72.84 Aligned_cols=99 Identities=26% Similarity=0.317 Sum_probs=65.6
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ . ..+. |
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~------~---~~~l---------~------------------------- 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFER------G---DRIL---------P------------------------- 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEec------C---CCcC---------c-------------------------
Confidence 5899999999999999999999999999993 1 1100 0
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC--C-EEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP--N-EVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~--~-~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
.++ ..+...+...+++. |+++.++ +..++. + .+.+...+++..++.+|.+++|+|.+|+.
T Consensus 207 ---~~d------------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 207 ---LED------------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred ---chh------------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 000 01122233445666 8888765 444432 2 34443334444579999999999999887
Q ss_pred CC
Q 042564 180 AP 181 (498)
Q Consensus 180 p~ 181 (498)
..
T Consensus 271 ~~ 272 (460)
T PRK06292 271 DG 272 (460)
T ss_pred CC
Confidence 63
No 335
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.76 E-value=3.1e-05 Score=84.76 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHHhC--CCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANF--GAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~--g~~V~lvek 54 (498)
+|+||||||||+++|+.|++. |++|+|+|+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr 33 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVER 33 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 699999999999999999997 899999994
No 336
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.75 E-value=0.00016 Score=70.37 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=73.7
Q ss_pred CccEEEECCChhHHHHHHHHHh--------------CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHh
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN--------------FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASF 88 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~--------------~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~ 88 (498)
.-++|||||||.|...|.+|+. ...+|+|+|. ..
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA----------~d---------------------- 265 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEA----------AD---------------------- 265 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeecc----------ch----------------------
Confidence 3589999999999999999985 2358888882 11
Q ss_pred hHHHhhhhcCCcccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcC
Q 042564 89 GGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAK 167 (498)
Q Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d 167 (498)
.++...+ +++..+-++.+.+.+|++..++ ++.+.+..+.+...+|+..++.|-
T Consensus 266 -----------------------~iL~mFd---krl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG 319 (491)
T KOG2495|consen 266 -----------------------HILNMFD---KRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYG 319 (491)
T ss_pred -----------------------hHHHHHH---HHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecce
Confidence 0011111 2233444567788899999996 667889999998888888899999
Q ss_pred eEEEcCCCCCCC
Q 042564 168 HILIATGSRAQR 179 (498)
Q Consensus 168 ~liiAtG~~p~~ 179 (498)
-++-|||..|+.
T Consensus 320 ~lVWatG~~~rp 331 (491)
T KOG2495|consen 320 LLVWATGNGPRP 331 (491)
T ss_pred EEEecCCCCCch
Confidence 999999987653
No 337
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.74 E-value=0.00026 Score=72.72 Aligned_cols=96 Identities=28% Similarity=0.377 Sum_probs=66.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+|+++ .. . ..|
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~----------~~---~-----~l~------------------------- 195 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEA----------AS---L-----FLP------------------------- 195 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEec----------CC---C-----CCC-------------------------
Confidence 4799999999999999999999999999993 11 0 000
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
..+. .+...+.+.+++.||+++.++ +..++ .+.+.+...++ ++.+|.+++|+|.+|+..
T Consensus 196 ---~~~~------------~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g---~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 196 ---REDR------------DIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA---QLAVDALLIASGRQPATA 257 (441)
T ss_pred ---CcCH------------HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC---eEEeCEEEEeecCCcCCC
Confidence 0110 011223445677899999875 44553 34556655443 588999999999998764
No 338
>PRK14694 putative mercuric reductase; Provisional
Probab=97.73 E-value=0.00019 Score=74.33 Aligned_cols=96 Identities=21% Similarity=0.295 Sum_probs=66.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||+|+.|+..|..|++.|.+|+++++ ..+ +|
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~----------~~~---------l~------------------------- 214 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLAR----------SRV---------LS------------------------- 214 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEC----------CCC---------CC-------------------------
Confidence 5799999999999999999999999999992 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
..+ .+ +...+...+++.||+++.+. +..++ ...+.+...++ ++.+|.|++|+|.+|+..
T Consensus 215 ---~~~-~~-----------~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~---~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 215 ---QED-PA-----------VGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG---TLRAEQLLVATGRTPNTE 276 (468)
T ss_pred ---CCC-HH-----------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC---EEEeCEEEEccCCCCCcC
Confidence 000 00 11223445667899999874 55554 33445554333 699999999999998765
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 277 ~ 277 (468)
T PRK14694 277 N 277 (468)
T ss_pred C
Confidence 3
No 339
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.72 E-value=0.00036 Score=72.79 Aligned_cols=135 Identities=21% Similarity=0.260 Sum_probs=84.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------------------------------CCC---------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------------------------------RGF--------- 240 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------------------------------~~~--------- 240 (498)
.|+|+|||+|++|+-.+..+.+.|.+++++++.+.+- +.+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 3799999999999999999999999999999887431 011
Q ss_pred --CHHHHHHHHHHHHhCCC--EEEcCccEEEEEEeCC-----eEEEEECC-Ce--EEEcCEEEEecCCC--cCCCCCCcc
Q 042564 241 --DDEMRAVVARNLEGRGI--NLHPRTTIKELIKSEE-----GVKVITDH-GE--EIVADVVLFATGRA--PNTKRLNLK 306 (498)
Q Consensus 241 --~~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~~-----~~~v~~~~-g~--~i~~D~vi~a~G~~--p~~~~l~l~ 306 (498)
.+++.+.++...+..++ .++++++|.++...++ ...|++.+ |+ +..+|.|++|+|.. |+.....+
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~- 159 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF- 159 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB------
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh-
Confidence 14577778888877766 5889999999987653 36676653 43 35689999999964 44331001
Q ss_pred cCCceeCCCCCeEcCCCCCC----CCCCeEEecccC
Q 042564 307 AVGVEVDQTGAVKVDENSRT----NVPSIWAVGDVT 338 (498)
Q Consensus 307 ~~gi~~~~~g~i~vd~~~~t----~~~~iya~GD~~ 338 (498)
.|++-- +|.+.--..++. ..++|-++|-..
T Consensus 160 -~G~e~F-~G~i~HS~~yr~~~~f~gKrVlVVG~g~ 193 (531)
T PF00743_consen 160 -PGLEKF-KGEIIHSKDYRDPEPFKGKRVLVVGGGN 193 (531)
T ss_dssp -CTGGGH-CSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred -hhhhcC-CeeEEccccCcChhhcCCCEEEEEeCCH
Confidence 122211 244443333332 456788888543
No 340
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.71 E-value=0.00011 Score=80.40 Aligned_cols=92 Identities=20% Similarity=0.264 Sum_probs=69.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
+++|+|||+|+.|+..|..|++.|.+|+++++.+.+ ++. ++.++.....+.+++.||++++++.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~----- 505 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG----- 505 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC-----
Confidence 469999999999999999999999999999986532 121 456676666777888999999986541
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCC-CcCC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGR-APNT 300 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~ 300 (498)
. .+++++.....+|.||+|+|. .|..
T Consensus 506 -~--~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 506 -K--TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -C--cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 1 133333334669999999998 4654
No 341
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.70 E-value=0.00044 Score=72.95 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=75.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-----C------------------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-----F------------------------------------ 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-----~------------------------------------ 240 (498)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... +
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 90 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGRC 90 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCCE
Confidence 57999999999999999999999999999987521000 0
Q ss_pred ----C-----------------HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEEC--CC--eEEEcCEEEEec
Q 042564 241 ----D-----------------DEMRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVITD--HG--EEIVADVVLFAT 294 (498)
Q Consensus 241 ----~-----------------~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~~--~g--~~i~~D~vi~a~ 294 (498)
+ +.+.+.+.+.+.+ .|+++++++++++++.+++++.+++. +| +++.+|.||-|.
T Consensus 91 ~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgAD 170 (538)
T PRK06183 91 LAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCD 170 (538)
T ss_pred EEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecC
Confidence 0 0122334444544 38999999999999988888777775 46 479999999999
Q ss_pred CCCcCC
Q 042564 295 GRAPNT 300 (498)
Q Consensus 295 G~~p~~ 300 (498)
|.++..
T Consensus 171 G~~S~v 176 (538)
T PRK06183 171 GANSFV 176 (538)
T ss_pred CCchhH
Confidence 987654
No 342
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.70 E-value=0.00053 Score=69.51 Aligned_cols=100 Identities=10% Similarity=0.148 Sum_probs=74.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC---------C-------------------------------CC-
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL---------R-------------------------------GF- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l---------~-------------------------------~~- 240 (498)
++|+|||||+.|+-+|..|++.|.+|+++++.+.+- + ..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 689999999999999999999999999999776310 0 00
Q ss_pred -----C------------------HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEE---CCCeEEEcCEEEEe
Q 042564 241 -----D------------------DEMRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVIT---DHGEEIVADVVLFA 293 (498)
Q Consensus 241 -----~------------------~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~i~~D~vi~a 293 (498)
+ .++.+.+.+.+.+ .+++++++++|.++..+++++.+++ .+++++.+|+||-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgA 162 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIAC 162 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEEC
Confidence 0 1222334444444 4799999999999987777776665 34457999999999
Q ss_pred cCCCcCCC
Q 042564 294 TGRAPNTK 301 (498)
Q Consensus 294 ~G~~p~~~ 301 (498)
-|.++..-
T Consensus 163 DG~~S~vR 170 (400)
T PRK06475 163 DGVWSMLR 170 (400)
T ss_pred CCccHhHH
Confidence 99877553
No 343
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.69 E-value=0.00011 Score=76.49 Aligned_cols=90 Identities=22% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT 279 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~ 279 (498)
..++++|+|+|.+|+++|..|.+.|.+|+++++.+. +....+.+.+++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~------------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT------------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-------------
Confidence 357899999999999999999999999999986542 233455667888899999875442
Q ss_pred CCCeEEEcCEEEEecCCCcCCCCCC-cccCCcee
Q 042564 280 DHGEEIVADVVLFATGRAPNTKRLN-LKAVGVEV 312 (498)
Q Consensus 280 ~~g~~i~~D~vi~a~G~~p~~~~l~-l~~~gi~~ 312 (498)
....+|.||+++|..|+.+.+. +++.|+++
T Consensus 75 ---~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 75 ---LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred ---ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 0245899999999999998531 24445554
No 344
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.69 E-value=0.00018 Score=72.13 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHCCCcE------EEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC--e---EEEEE
Q 042564 211 YIAVEFASIWRGMGSTV------DLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEE--G---VKVIT 279 (498)
Q Consensus 211 ~~g~e~a~~l~~~g~~V------~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~---~~v~~ 279 (498)
.+++|+-..|.++=..+ .-+.+... ...+.+..-+.+.|+++||++++++.|+.|.-+.+ . ..+.+
T Consensus 173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~Y---NQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~ 249 (500)
T PF06100_consen 173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKY---NQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHI 249 (500)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCccccccCcc---ccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEE
Confidence 36788888887762222 22222110 13456888899999999999999999999976432 1 12222
Q ss_pred -CCCe--EEE---cCEEEEecCCCcCC
Q 042564 280 -DHGE--EIV---ADVVLFATGRAPNT 300 (498)
Q Consensus 280 -~~g~--~i~---~D~vi~a~G~~p~~ 300 (498)
.+|. .++ -|+|++..|..-..
T Consensus 250 ~~~g~~~~i~l~~~DlV~vT~GS~t~~ 276 (500)
T PF06100_consen 250 EQDGKEETIDLGPDDLVFVTNGSMTEG 276 (500)
T ss_pred EcCCCeeEEEeCCCCEEEEECCccccc
Confidence 3443 232 58888888865433
No 345
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.69 E-value=4e-05 Score=79.10 Aligned_cols=55 Identities=22% Similarity=0.389 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCe-----EEEcCEEEEecCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGE-----EIVADVVLFATGR 296 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~-----~i~~D~vi~a~G~ 296 (498)
..+.+.+.+.+++.|++|++++.|++|...+++ ..+++.+++ ++.+|.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 557788888888899999999999999754443 346665554 7899999999875
No 346
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.69 E-value=0.0004 Score=71.52 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=64.4
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..|++.|.+|+++++ .+ .+.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~------~~---~ll----------------------------------- 205 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNR------ST---KLL----------------------------------- 205 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEc------cC---ccc-----------------------------------
Confidence 5899999999999999999999999999993 11 100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
+.++. ++ ...+.+.+ +.+++++.+. +..++ .+.+.+...+|+ ++++|.+++|+|.+|+..
T Consensus 206 --~~~d~-~~-----------~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~--~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 206 --RHLDE-DI-----------SDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGS--TVTADVLLVATGRVPNGD 268 (452)
T ss_pred --cccCH-HH-----------HHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCC--EEEcCEEEEeeccCcCCC
Confidence 00110 00 01112222 3478888764 44443 345666666664 799999999999998765
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 269 ~ 269 (452)
T TIGR03452 269 L 269 (452)
T ss_pred C
Confidence 3
No 347
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.69 E-value=0.00035 Score=68.98 Aligned_cols=93 Identities=29% Similarity=0.396 Sum_probs=66.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEee-CCCCCC-----C-------------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFR-KELPLR-----G------------------------------------- 239 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~-~~~~l~-----~------------------------------------- 239 (498)
.|+|||||..|+|.|..+++.|.+|.++.. .+.+.. .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 489999999999999999999999999943 222110 0
Q ss_pred -----------CCH-HHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCC
Q 042564 240 -----------FDD-EMRAVVARNLEG-RGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 240 -----------~~~-~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.|. ...+.+.+.++. .+++++. .+|.++..+++. ..|.+.+|+.+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 011 133335666666 5898874 589999877665 6788999999999999999998
No 348
>PRK14727 putative mercuric reductase; Provisional
Probab=97.68 E-value=0.00032 Score=72.80 Aligned_cols=95 Identities=23% Similarity=0.286 Sum_probs=66.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..+++.|.+|+|+++ ..+ +|
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~----------~~~---------l~------------------------- 224 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILAR----------STL---------LF------------------------- 224 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEc----------CCC---------CC-------------------------
Confidence 5799999999999999999999999999992 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEE--eCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIV--GPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i--~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.++. .+...+.+.+++.||+++.+. +..+ +.+.+.+...++ ++.+|.+++|+|..|+..
T Consensus 225 ---~~d~------------~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g---~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 225 ---REDP------------LLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG---ELRAEKLLISTGRHANTH 286 (479)
T ss_pred ---cchH------------HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC---eEEeCEEEEccCCCCCcc
Confidence 0010 111223445667899999875 4444 344566655443 588999999999998765
No 349
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.66 E-value=0.00035 Score=72.36 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=29.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+++|||||+.|+..|..+++.|.+|+|||
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~ 204 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVE 204 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEe
Confidence 579999999999999999999999999999
No 350
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.66 E-value=0.00039 Score=72.03 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=64.4
Q ss_pred ccEEEECCChhHHHHHHHHHh---CCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCc
Q 042564 24 FDLFVIGAGSGGVRAARFSAN---FGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGW 100 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~---~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~ 100 (498)
.+++|||||+.|+..|..++. .|.+|+|+++ . ..+
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~------~---~~i--------------------------------- 225 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYR------N---NMI--------------------------------- 225 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEec------C---Ccc---------------------------------
Confidence 579999999999999977655 4999999993 1 110
Q ss_pred ccccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeC---CEEEEEeCCCceEEEEcCeEEEcCCCC
Q 042564 101 EVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGP---NEVEVTQLDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~---~~~~v~~~~g~~~~~~~d~liiAtG~~ 176 (498)
.+.+|. .+...+...+++.||+++.++ +..++. ....+.+.+++ ++++|.+++|+|.+
T Consensus 226 ----l~~~d~------------~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~--~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 226 ----LRGFDS------------TLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGK--TLDVDVVMMAIGRV 287 (486)
T ss_pred ----ccccCH------------HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCC--EEEcCEEEEeeCCC
Confidence 001110 111223345667899999886 444532 23455555554 79999999999998
Q ss_pred CCCC
Q 042564 177 AQRA 180 (498)
Q Consensus 177 p~~p 180 (498)
|+..
T Consensus 288 Pn~~ 291 (486)
T TIGR01423 288 PRTQ 291 (486)
T ss_pred cCcc
Confidence 8765
No 351
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.66 E-value=0.00047 Score=69.58 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=71.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-----C-------------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-----F------------------------------------- 240 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-----~------------------------------------- 240 (498)
+|+|||+|+.|+-+|..+.+.|.+|.++++.+.+... +
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 4899999999999999999999999999976532100 0
Q ss_pred ---CHHHHHHHHHHHHhCCCEEEcCccEEEEEEe-CCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 241 ---DDEMRAVVARNLEGRGINLHPRTTIKELIKS-EEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 241 ---~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
...+.+.+.+.+.+.|++++ ...+..+..+ ++...+++.+|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 01233445566667789886 4578888766 445677888888899999999999887
No 352
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.66 E-value=0.0007 Score=63.42 Aligned_cols=30 Identities=33% Similarity=0.366 Sum_probs=28.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
-|||||+|.|||+|+..+...|-.|+|+||
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek 40 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEK 40 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEec
Confidence 599999999999999999998888999996
No 353
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.65 E-value=0.00017 Score=74.82 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=68.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------CC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------RG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. +++++.....+.+++.||++++++.+..-
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--- 219 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD--- 219 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc---
Confidence 4799999999999999999999999999999877542 22 45667666677888899999999876311
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
+.. ++....+|.|++|+|..
T Consensus 220 -----~~~-~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 -----ISA-DELKEQFDAVVLAGGAT 239 (485)
T ss_pred -----cCH-HHHHhhCCEEEEccCCC
Confidence 110 11135689999999998
No 354
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.65 E-value=0.0012 Score=62.32 Aligned_cols=52 Identities=27% Similarity=0.405 Sum_probs=42.2
Q ss_pred CCccEEEECCChhHHHHHHHHHh----CCCcEEEEccCCCCCCCCcCCCccccccc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN----FGAKVGICELPFHPISSEVIGGVGGTCVI 73 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~----~g~~V~lvek~~~~~~~~~~~~~GG~~~~ 73 (498)
.++||+|||||-.|.+.|+-|++ .|.+|++||+....-+.+..-.+||.|-.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQ 140 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQ 140 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeee
Confidence 36799999999999999999986 57999999976666555555568898843
No 355
>PLN02661 Putative thiazole synthesis
Probab=97.64 E-value=0.0017 Score=63.18 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=94.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCcEEEEeeCCCCCC----------C-----------------CC-----------H
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM-GSTVDLLFRKELPLR----------G-----------------FD-----------D 242 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~-g~~V~lv~~~~~~l~----------~-----------------~~-----------~ 242 (498)
-+|+|||+|..|+-+|..+++. |.+|+++++...+-. . ++ .
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~ 172 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAA 172 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchH
Confidence 4899999999999999999875 889999998653210 0 01 1
Q ss_pred HHHHHHHH-HHHhCCCEEEcCccEEEEEEeCCe-EEEEE-------C--CC-----eEEEcCEEEEecCCCcCCCCCC--
Q 042564 243 EMRAVVAR-NLEGRGINLHPRTTIKELIKSEEG-VKVIT-------D--HG-----EEIVADVVLFATGRAPNTKRLN-- 304 (498)
Q Consensus 243 ~~~~~l~~-~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~-------~--~g-----~~i~~D~vi~a~G~~p~~~~l~-- 304 (498)
++.+.+.+ .+++.|++++.++.+.++..+++. ..+.+ . ++ ..+.++.||+|||..+......
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~~ 252 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 252 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhhh
Confidence 11222333 344578999999999998776554 33332 1 11 2589999999999665332111
Q ss_pred -cccCCcee--CCCCCeEcCC-------CCCCCCCCeEEecccCCC----CCC--hHHH-HHHHHHHHHHHhC
Q 042564 305 -LKAVGVEV--DQTGAVKVDE-------NSRTNVPSIWAVGDVTNR----MNL--TPVA-LMEGTCFAKTVFG 360 (498)
Q Consensus 305 -l~~~gi~~--~~~g~i~vd~-------~~~t~~~~iya~GD~~~~----~~~--~~~A-~~~g~~aa~~i~~ 360 (498)
+...|+.. ..-...+++. +-+--+|++|++|=.+.. +.. .-.+ +.+|+.+|+.++.
T Consensus 253 ~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~ 325 (357)
T PLN02661 253 RLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALK 325 (357)
T ss_pred cccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHH
Confidence 11122210 0001122221 112247999999966532 222 2234 4678888888764
No 356
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.64 E-value=0.00035 Score=72.50 Aligned_cols=98 Identities=23% Similarity=0.201 Sum_probs=65.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-+|..+++.|.+|+|+++ ..+
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~----------~~~------------------------------------ 214 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR----------SIL------------------------------------ 214 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe----------ccc------------------------------------
Confidence 4799999999999999999999999999992 110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCc-eEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGT-KLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~-~~~~~~d~liiAtG~~p~~ 179 (498)
.+.+|. .+...+.+.+++.||+++.+. +..+. .+.+.+...+++ ..++.+|.+++|+|.+|+.
T Consensus 215 -l~~~d~------------~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 215 -LRGFDQ------------DCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred -ccccCH------------HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 000110 011223345667899999875 33332 334455544432 2479999999999998876
Q ss_pred C
Q 042564 180 A 180 (498)
Q Consensus 180 p 180 (498)
.
T Consensus 282 ~ 282 (484)
T TIGR01438 282 R 282 (484)
T ss_pred C
Confidence 5
No 357
>PTZ00058 glutathione reductase; Provisional
Probab=97.63 E-value=0.00044 Score=72.58 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=65.7
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
..+++|||||+.|+..|..+++.|.+|+++++ .+ .+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~------~~---~i----------------------------------- 272 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFAR------GN---RL----------------------------------- 272 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEe------cc---cc-----------------------------------
Confidence 35799999999999999999999999999993 11 10
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEeCC---EEEEEeCCCceEEEEcCeEEEcCCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVGPN---EVEVTQLDGTKLSYSAKHILIATGSRAQ 178 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~~~---~~~v~~~~g~~~~~~~d~liiAtG~~p~ 178 (498)
.+.+|. + +...+...+++.||+++.+. +..++.. .+.+...++ ..++.+|.|++|+|.+|+
T Consensus 273 --l~~~d~-~-----------i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~-~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 273 --LRKFDE-T-----------IINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDG-RKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred --cccCCH-H-----------HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCC-CEEEECCEEEECcCCCCC
Confidence 001110 0 11122344567899999876 4445432 344444333 247999999999998887
Q ss_pred CC
Q 042564 179 RA 180 (498)
Q Consensus 179 ~p 180 (498)
..
T Consensus 338 ~~ 339 (561)
T PTZ00058 338 TE 339 (561)
T ss_pred cc
Confidence 54
No 358
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.63 E-value=0.00036 Score=72.73 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=66.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-.|..|++.|.+|+|+++ ..+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~----------~~~------------------------------------ 216 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR----------SIP------------------------------------ 216 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc----------Ccc------------------------------------
Confidence 4799999999999999999999999999982 110
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
...++. .+...+...+++.||+++.+. +..+. .+...+...+|+ ++.+|.|++|+|.+|+..
T Consensus 217 -l~~~d~------------~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~--~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 217 -LRGFDR------------QCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGT--TELFDTVLYATGRKPDIK 281 (499)
T ss_pred -cccCCH------------HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCC--EEEcCEEEEeeCCCCCcc
Confidence 000110 011223345667899999885 33332 234556665665 689999999999998765
Q ss_pred C
Q 042564 181 P 181 (498)
Q Consensus 181 ~ 181 (498)
.
T Consensus 282 ~ 282 (499)
T PTZ00052 282 G 282 (499)
T ss_pred c
Confidence 3
No 359
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.62 E-value=0.00019 Score=80.55 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=69.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++. .+.++.+...+.+++.||++++++.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg----- 504 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG----- 504 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-----
Confidence 369999999999999999999999999999987643 122 467788888888999999999996541
Q ss_pred CCeEEEEECCC-eEEEcCEEEEecCCC-cCC
Q 042564 272 EEGVKVITDHG-EEIVADVVLFATGRA-PNT 300 (498)
Q Consensus 272 ~~~~~v~~~~g-~~i~~D~vi~a~G~~-p~~ 300 (498)
. .+++.+- +...+|.||+|||.. |..
T Consensus 505 -~--~~~~~~l~~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 505 -K--TFTVPQLMNDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred -C--ccCHHHHhhccCCCEEEEecCCCCCCC
Confidence 1 1221111 024589999999985 543
No 360
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.62 E-value=0.00063 Score=69.35 Aligned_cols=97 Identities=21% Similarity=0.169 Sum_probs=71.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCCCCC-----CCH-------------HH-------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELPLRG-----FDD-------------EM------------------- 244 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~l~~-----~~~-------------~~------------------- 244 (498)
+|+|||+|+.|+-+|..|++.| .+|+++++.+.+-.. +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 599999987642100 000 00
Q ss_pred ----------------------HHHHHHHHHhC--CCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 245 ----------------------RAVVARNLEGR--GINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 245 ----------------------~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
...+.+.|.+. ...++++++|.++..+++++.+.+.+|+++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 00122222221 45678899999998877778888899989999999999998764
No 361
>PLN02529 lysine-specific histone demethylase 1
Probab=97.61 E-value=7.1e-05 Score=80.25 Aligned_cols=33 Identities=36% Similarity=0.471 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
..+||+|||||++|++||..|++.|++|+|+|+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~ 191 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEG 191 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEec
Confidence 457999999999999999999999999999995
No 362
>PLN02697 lycopene epsilon cyclase
Probab=97.59 E-value=0.00077 Score=70.11 Aligned_cols=96 Identities=18% Similarity=0.277 Sum_probs=71.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC------------CC----------------------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG------------FD---------------------------- 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~------------~~---------------------------- 241 (498)
-+|+|||+|+.|+-+|..+.+.|.+|.++++...+... ++
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 47999999999999999999999999999864321100 00
Q ss_pred ---HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEE-EEECCCeEEEcCEEEEecCCCc
Q 042564 242 ---DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-VITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ---~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p 298 (498)
..+.+.+.+.+.+.|+++ .++.|.++..+++... +.+.+|.++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 012244555666779998 5678999887666644 4567788899999999999887
No 363
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.59 E-value=0.0017 Score=65.82 Aligned_cols=135 Identities=17% Similarity=0.157 Sum_probs=88.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-------------------------------C----------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR-------------------------------G---------- 239 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~-------------------------------~---------- 239 (498)
+++++|||+|++|+-.|..|.+.|.++++++|.+.+-. .
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 68999999999999999999999999999999874310 0
Q ss_pred -CC-HHHHHHHHHHHHhCCC--EEEcCccEEEEEEeC-CeEEEEECCC----eEEEcCEEEEecCCC--cCCCCCCcccC
Q 042564 240 -FD-DEMRAVVARNLEGRGI--NLHPRTTIKELIKSE-EGVKVITDHG----EEIVADVVLFATGRA--PNTKRLNLKAV 308 (498)
Q Consensus 240 -~~-~~~~~~l~~~l~~~Gv--~i~~~~~v~~i~~~~-~~~~v~~~~g----~~i~~D~vi~a~G~~--p~~~~l~l~~~ 308 (498)
.. .++.+.|....+.-++ .+.+++++..+.... +...|.+.+. +...+|.|++|+|.. |+...+ ...
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~--~g~ 163 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI--PGP 163 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC--CCC
Confidence 01 1355556666666665 578888888888777 4677766543 356799999999987 555432 221
Q ss_pred CceeCCCCCeEcCCCCCC---CCCCeEEeccc
Q 042564 309 GVEVDQTGAVKVDENSRT---NVPSIWAVGDV 337 (498)
Q Consensus 309 gi~~~~~g~i~vd~~~~t---~~~~iya~GD~ 337 (498)
+++.-+...+-.-++-.. ....|.++|--
T Consensus 164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g 195 (448)
T KOG1399|consen 164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVGCG 195 (448)
T ss_pred chhhcCCcceehhhccCcccccCceEEEECCC
Confidence 222222112222222222 45778888843
No 364
>PRK13748 putative mercuric reductase; Provisional
Probab=97.59 E-value=0.00045 Score=73.34 Aligned_cols=95 Identities=23% Similarity=0.247 Sum_probs=65.9
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+-.|..|++.|.+|+|+++ ..+ +|
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~----------~~~---------l~------------------------- 306 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILAR----------STL---------FF------------------------- 306 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEec----------Ccc---------cc-------------------------
Confidence 5799999999999999999999999999992 110 00
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe--CCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG--PNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~--~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.+|. .+...+.+.+++.||+++.++ +..+. .+.+.+...++ ++.+|.+++|+|..|+..
T Consensus 307 ---~~d~------------~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~---~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 307 ---REDP------------AIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG---ELRADKLLVATGRAPNTR 368 (561)
T ss_pred ---ccCH------------HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC---eEEeCEEEEccCCCcCCC
Confidence 0010 011223445667899999875 44443 34455555443 689999999999998865
No 365
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.59 E-value=0.00028 Score=77.94 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=65.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+ .+. .+.+......+.+.+.||+++++....
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence 468999999999999999999999999999987643 122 344555555667778899998874211
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
+.+.+.+...+|.||+|+|.++..
T Consensus 612 -----~~ve~l~~~gYDaVIIATGA~~~~ 635 (1012)
T TIGR03315 612 -----LTVAELKNQGYKYVILAIGAWKHG 635 (1012)
T ss_pred -----eEhhhhhcccccEEEECCCCCCCC
Confidence 112222345689999999998644
No 366
>PLN02676 polyamine oxidase
Probab=97.59 E-value=8e-05 Score=77.17 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=36.5
Q ss_pred CEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 257 INLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.+|+++++|++|..+++++.|++.+|+++.+|.||++++.
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence 6799999999999888889999999989999999999873
No 367
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.59 E-value=0.00022 Score=76.65 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=67.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+..|..|++.|.+|+++++.+.+ ++. +..++.+...+.+.+.|+++++++.+. +
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~--- 268 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R--- 268 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C---
Confidence 479999999999999999999999999999987754 122 456666667778888999999987542 1
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
.+.+.+. ...+|.||+|+|..+.
T Consensus 269 ----dv~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 ----DITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred ----ccCHHHH-HhhcCEEEEEcCCCCC
Confidence 1122211 2358999999998764
No 368
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.59 E-value=0.00087 Score=67.81 Aligned_cols=99 Identities=19% Similarity=0.316 Sum_probs=74.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCcEEEEeeCCCC---CC--------------------CCC--------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM---GSTVDLLFRKELP---LR--------------------GFD-------------- 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~---g~~V~lv~~~~~~---l~--------------------~~~-------------- 241 (498)
-+|+|||+|+.|+-+|..|++. |.+|+++++.... .+ .+.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 3699999999999999999998 9999999984100 00 000
Q ss_pred ----------------------------HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEE
Q 042564 242 ----------------------------DEMRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLF 292 (498)
Q Consensus 242 ----------------------------~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~ 292 (498)
.++.+.+.+.+.+ .|+++++++++.++..+++++.+++++|..+.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ 163 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVA 163 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEE
Confidence 0112233444444 47999999999999877777888888888899999999
Q ss_pred ecCCCcCC
Q 042564 293 ATGRAPNT 300 (498)
Q Consensus 293 a~G~~p~~ 300 (498)
|.|..+..
T Consensus 164 AdG~~S~v 171 (395)
T PRK05732 164 ADGSHSAL 171 (395)
T ss_pred ecCCChhh
Confidence 99988653
No 369
>PRK09897 hypothetical protein; Provisional
Probab=97.58 E-value=0.0013 Score=68.56 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=69.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--cEEEEeeCCCCCCC-----C------------------CHHH------------
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGS--TVDLLFRKELPLRG-----F------------------DDEM------------ 244 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~--~V~lv~~~~~~l~~-----~------------------~~~~------------ 244 (498)
++|+|||+|+.|+-++..|.+.+. +|++++++..+... . .+.+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 479999999999999999987644 79999986532110 0 0001
Q ss_pred -------------------------HHH---HHHHHHhCC--CEEEcCccEEEEEEeCCeEEEEECC-CeEEEcCEEEEe
Q 042564 245 -------------------------RAV---VARNLEGRG--INLHPRTTIKELIKSEEGVKVITDH-GEEIVADVVLFA 293 (498)
Q Consensus 245 -------------------------~~~---l~~~l~~~G--v~i~~~~~v~~i~~~~~~~~v~~~~-g~~i~~D~vi~a 293 (498)
.+. +.+.+.+.| +.++.+++|+++..+++++.+.+.+ +..+.+|.||+|
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLA 161 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIA 161 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEEC
Confidence 111 223334455 7788888999998888788888755 467999999999
Q ss_pred cCCCcCC
Q 042564 294 TGRAPNT 300 (498)
Q Consensus 294 ~G~~p~~ 300 (498)
+|..++.
T Consensus 162 tGh~~p~ 168 (534)
T PRK09897 162 TGHVWPD 168 (534)
T ss_pred CCCCCCC
Confidence 9975543
No 370
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.56 E-value=0.00025 Score=73.40 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=67.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------C--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------R--GFDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
+++|+|||+|+.|+..|..|.+.|.+|+++++.+.+. + .++.++.....+.+.+.||++++++.+..-
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~--- 219 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKD--- 219 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCc---
Confidence 4799999999999999999999999999999876542 1 135566666677788899999999765310
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+.. +.....+|.||+|+|..+
T Consensus 220 -----~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 220 -----ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred -----CCH-HHHHhhCCEEEEecCCCC
Confidence 100 111246899999999973
No 371
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.56 E-value=0.00023 Score=76.42 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=70.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------C--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------R--GFDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+..|..|++.|.+|+++++.+.+. + .++.++.+...+.+++.||++++++.+..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---- 385 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---- 385 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC----
Confidence 5899999999999999999999999999999887532 1 25677777777888999999999976631
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+.+ ....+|.|++|+|..+..
T Consensus 386 ----~~~~~~-l~~~~DaV~latGa~~~~ 409 (639)
T PRK12809 386 ----DITFSD-LTSEYDAVFIGVGTYGMM 409 (639)
T ss_pred ----cCCHHH-HHhcCCEEEEeCCCCCCC
Confidence 011211 124689999999987543
No 372
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.53 E-value=0.0014 Score=66.28 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=74.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC--C---------------------------------------C-
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL--R---------------------------------------G- 239 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l--~---------------------------------------~- 239 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... . .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 479999999999999999999999999999875310 0 0
Q ss_pred -----C-------------CHHHHHHHHHHHHhCCCEEEcCccEEEEEE-eCCeEEEEE-CCCe--EEEcCEEEEecCCC
Q 042564 240 -----F-------------DDEMRAVVARNLEGRGINLHPRTTIKELIK-SEEGVKVIT-DHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 240 -----~-------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~~~v~~-~~g~--~i~~D~vi~a~G~~ 297 (498)
+ ...+.+.+.+...+.|+++++++++.+++. +++...|++ .+|+ ++.+|.||-|-|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~ 162 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFH 162 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCC
Confidence 0 012233344445667999999999999876 455566666 4664 68999999999988
Q ss_pred cCCC
Q 042564 298 PNTK 301 (498)
Q Consensus 298 p~~~ 301 (498)
...-
T Consensus 163 S~vR 166 (392)
T PRK08243 163 GVSR 166 (392)
T ss_pred Cchh
Confidence 7654
No 373
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.52 E-value=0.00027 Score=71.87 Aligned_cols=90 Identities=19% Similarity=0.222 Sum_probs=69.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------CC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------RG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+.+|..|++.|..|+++++.+..- |. ++.++.+...+.|++.|++|+.++.+-.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---- 198 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---- 198 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC----
Confidence 4799999999999999999999999999999887541 22 5778999999999999999999977631
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
.+++++ ..-+.|.|++++|..-.
T Consensus 199 ----~it~~~-L~~e~Dav~l~~G~~~~ 221 (457)
T COG0493 199 ----DITLEE-LLKEYDAVFLATGAGKP 221 (457)
T ss_pred ----cCCHHH-HHHhhCEEEEeccccCC
Confidence 011111 12335999999996433
No 374
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.52 E-value=0.0013 Score=64.24 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=30.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
+.+|+|||||.+|+++|..|.+.|++|+|+|+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~ 33 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLES 33 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEee
Confidence 35899999999999999999999999999995
No 375
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.51 E-value=0.00088 Score=66.40 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=76.3
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCccc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEV 102 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~ 102 (498)
...|+++|+|..|+-+|..|...+++|++|++ .. .|+|.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~----------e~--------~~~~~----------------------- 251 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFP----------EP--------WLLPR----------------------- 251 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEcc----------Cc--------cchhh-----------------------
Confidence 45699999999999999999999999999992 11 12221
Q ss_pred ccccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeEEE-EEe----CCEEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 103 HEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGK-IVG----PNEVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~-~i~----~~~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
-....+.+.+..++++.||+++.++.. .++ .+...|.+.+|. ++.+|.||+.+|++|
T Consensus 252 ----------------lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~--~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 252 ----------------LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGK--TLEADLVVVGIGIKP 313 (478)
T ss_pred ----------------hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCC--EeccCeEEEeecccc
Confidence 111223444567788899999999844 332 244667777876 999999999999999
Q ss_pred CCCCCC
Q 042564 178 QRAPIP 183 (498)
Q Consensus 178 ~~p~i~ 183 (498)
+.+.+.
T Consensus 314 ~t~~~~ 319 (478)
T KOG1336|consen 314 NTSFLE 319 (478)
T ss_pred cccccc
Confidence 988655
No 376
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.49 E-value=9.4e-05 Score=71.69 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEe--CCe---EEEEECCCe----EEEcCEEEEecCCCcCCCCCCcccCCc
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKS--EEG---VKVITDHGE----EIVADVVLFATGRAPNTKRLNLKAVGV 310 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~---~~v~~~~g~----~i~~D~vi~a~G~~p~~~~l~l~~~gi 310 (498)
....+...++..++++++++.|++|..+ +.. +.+...++. .+.++.||+|.|.--...+ |..+|+
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~L--Ll~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRL--LLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHH--HHHTTE
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhh--hccccc
Confidence 4455666666669999999999999654 333 333444443 4678999999997555444 334444
No 377
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.48 E-value=0.00043 Score=66.37 Aligned_cols=100 Identities=25% Similarity=0.420 Sum_probs=71.2
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||..||..+.-..+.|.+|++||- ...+||.
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf---------~~~i~~~--------------------------------- 249 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEF---------LDQIGGV--------------------------------- 249 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEe---------hhhhccc---------------------------------
Confidence 4799999999999999999999999999991 1222211
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe---CCEEEEEe---CCCceEEEEcCeEEEcCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG---PNEVEVTQ---LDGTKLSYSAKHILIATGSR 176 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~---~~~~~v~~---~~g~~~~~~~d~liiAtG~~ 176 (498)
+| .++...+++.+.+.|+.+..++ +...+ .+.+.+.. .+++.+++++|.+++++|-+
T Consensus 250 ----mD------------~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 250 ----MD------------GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred ----cC------------HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence 11 1223345567778899999987 33332 22444443 34667889999999999999
Q ss_pred CCCCC
Q 042564 177 AQRAP 181 (498)
Q Consensus 177 p~~p~ 181 (498)
|+.-.
T Consensus 314 P~t~G 318 (506)
T KOG1335|consen 314 PFTEG 318 (506)
T ss_pred ccccC
Confidence 98753
No 378
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.48 E-value=0.00098 Score=61.59 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=30.4
Q ss_pred CCCCccEEEECCChhHHHHHHHHHhCC------CcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSANFG------AKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~~g------~~V~lvek 54 (498)
|...++++|+|||+.|..+|+.|++.+ ..|+|+|+
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs 47 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFES 47 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEee
Confidence 334578999999999999999999966 79999994
No 379
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.48 E-value=0.0016 Score=65.73 Aligned_cols=97 Identities=23% Similarity=0.256 Sum_probs=70.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC-CCCC-----------CCC------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRK-ELPL-----------RGF------------------------------ 240 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~-~~~l-----------~~~------------------------------ 240 (498)
+|+|||+|+.|+-+|..|++.|.+|.++++. +... ..+
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999987 2110 000
Q ss_pred --------CH-HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECC------C--eEEEcCEEEEecCCCcCC
Q 042564 241 --------DD-EMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDH------G--EEIVADVVLFATGRAPNT 300 (498)
Q Consensus 241 --------~~-~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~------g--~~i~~D~vi~a~G~~p~~ 300 (498)
+. .+-+.+.+.+.+.|++++.. .++++..+++.+.+++.+ | .++.+|.||.|.|..+..
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 00 12223455566779999765 588888777776676543 2 368999999999976644
No 380
>PLN02546 glutathione reductase
Probab=97.48 E-value=0.001 Score=69.98 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=64.3
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccccCchhhHHHHHHhHhhHHHhhhhcCCcccc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVH 103 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~~g~~p~~~l~~~~~~~~~~~~~~~~g~~~~ 103 (498)
.+++|||||+.|+..|..+++.|.+|+|+++ . ..+.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~------~---~~il----------------------------------- 288 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIR------Q---KKVL----------------------------------- 288 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEe------c---cccc-----------------------------------
Confidence 5899999999999999999999999999993 1 1100
Q ss_pred cccccCHHHHHHHHHHHHHHHhHHHHHHHHhCCcEEEEeE-EEEEe---CCEEEEEeCCCceEEEEcCeEEEcCCCCCCC
Q 042564 104 EKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGE-GKIVG---PNEVEVTQLDGTKLSYSAKHILIATGSRAQR 179 (498)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~i~---~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~ 179 (498)
+.++ ..+...+...+++.||+++.+. +..+. .+.+.+...++ ....+|.+++|+|.+|+.
T Consensus 289 --~~~d------------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g--~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 289 --RGFD------------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG--TVEGFSHVMFATGRKPNT 352 (558)
T ss_pred --cccC------------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe--EEEecCEEEEeeccccCC
Confidence 0000 0111223345567899999875 33442 34455554443 244589999999999876
Q ss_pred C
Q 042564 180 A 180 (498)
Q Consensus 180 p 180 (498)
.
T Consensus 353 ~ 353 (558)
T PLN02546 353 K 353 (558)
T ss_pred C
Confidence 5
No 381
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.47 E-value=0.0013 Score=68.65 Aligned_cols=94 Identities=29% Similarity=0.391 Sum_probs=67.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC-CC--CC------------------CC---------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE-LP--LR------------------GF--------------------- 240 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~-~~--l~------------------~~--------------------- 240 (498)
.|+|||||+.|++.|..+++.|.+|.++++.. .+ ++ .+
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s 85 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS 85 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence 69999999999999999999999999999873 11 00 00
Q ss_pred ------------CH-HHHHHHHHHHHhC-CCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCC
Q 042564 241 ------------DD-EMRAVVARNLEGR-GINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 241 ------------~~-~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
|. .+...+.+.+.+. |++++ ...|.++..+++. ..|.+.+|..+.|+.||+|+|..
T Consensus 86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 00 0122344445544 88876 4568887665555 45788889999999999999953
No 382
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.46 E-value=0.00012 Score=72.87 Aligned_cols=31 Identities=39% Similarity=0.410 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.||+|||||++|+.+|+.|++.|.+|+|+|+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~ 33 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEM 33 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 5899999999999999999999999999994
No 383
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.0016 Score=58.04 Aligned_cols=160 Identities=19% Similarity=0.271 Sum_probs=97.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-------CC-------------------------------H
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-------FD-------------------------------D 242 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-------~~-------------------------------~ 242 (498)
...|+|+|+|++|+..|..|++.|.+|.+++++-.+-.. |. .
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 358999999999999999999999999999987643110 11 1
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEeCC-e-EEEEEC-----------CCeEEEcCEEEEecCCCcCCCCCCccc--
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKSEE-G-VKVITD-----------HGEEIVADVVLFATGRAPNTKRLNLKA-- 307 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~-~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~~l~l~~-- 307 (498)
++...+....-+.|++++....|.++.-.++ + ..+.+. |--.++++.||-|||.....-.+-.+.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 1222334444567899999999999876555 3 223221 223688999999999765443210111
Q ss_pred -CCceeCCCCCeEcCC-------CCCCCCCCeEEecccCCC----CCCh--HHH-HHHHHHHHHHHhC
Q 042564 308 -VGVEVDQTGAVKVDE-------NSRTNVPSIWAVGDVTNR----MNLT--PVA-LMEGTCFAKTVFG 360 (498)
Q Consensus 308 -~gi~~~~~g~i~vd~-------~~~t~~~~iya~GD~~~~----~~~~--~~A-~~~g~~aa~~i~~ 360 (498)
+++++...+..+.+. +-+--.||+|++|=.+.. +... -.+ ..+|+.+|+.++.
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHH
Confidence 122222111222221 112257999999966542 2222 233 3578888877653
No 384
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.44 E-value=0.0004 Score=74.93 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=67.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------C--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEe
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------R--GFDDEMRAVVARNLEGRGINLHPRTTIKELIKS 271 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~ 271 (498)
.++|+|||+|+.|+..|..|++.|.+|+++++.+.+. + .++.++.....+.+++.|+++++++.+..
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---- 402 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---- 402 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC----
Confidence 5799999999999999999999999999999876531 2 24566776667788889999999976521
Q ss_pred CCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 272 EEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 272 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
.+.+.+ ....+|.|++|+|..+.
T Consensus 403 ----~i~~~~-~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 403 ----DISLES-LLEDYDAVFVGVGTYRS 425 (654)
T ss_pred ----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 011111 12368999999998654
No 385
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.43 E-value=0.00014 Score=75.15 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeC--Ce----EEEEECCC---eEEEcCEEEEecCCC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSE--EG----VKVITDHG---EEIVADVVLFATGRA 297 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~----~~v~~~~g---~~i~~D~vi~a~G~~ 297 (498)
...+.+.+.+.+++.|++|++++.|++|..++ ++ ..+.+.+| +.+++|.||+|++..
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 44466778888889999999999999998753 21 23345433 568999999999854
No 386
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.42 E-value=0.0015 Score=65.43 Aligned_cols=96 Identities=20% Similarity=0.293 Sum_probs=72.1
Q ss_pred eEEEEcCCHHHHHHHHHH--HHCCCcEEEEeeCCCCC-C------CCCHH------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIW--RGMGSTVDLLFRKELPL-R------GFDDE------------------------------ 243 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l--~~~g~~V~lv~~~~~~l-~------~~~~~------------------------------ 243 (498)
.|+|||+|+.|+-+|..| .+.|.+|.++++.+... + .+.++
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 489999999999999999 77899999998765430 0 01111
Q ss_pred --------HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 244 --------MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 244 --------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
+.+.+.+.+...| .++.+..|.+|..+++...+++++|+++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 2222445555344 566788999999888878889999999999999999996654
No 387
>PRK11445 putative oxidoreductase; Provisional
Probab=97.41 E-value=0.0028 Score=63.04 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=69.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC--C----C---CCHH------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL--R----G---FDDE------------------------------ 243 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l--~----~---~~~~------------------------------ 243 (498)
+|+|||+|+.|+-+|..|++. .+|+++++.+..- + . +.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 689999999999999999998 9999999875210 0 0 0000
Q ss_pred -------------------HHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE-CCCe--EEEcCEEEEecCCCcCC
Q 042564 244 -------------------MRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT-DHGE--EIVADVVLFATGRAPNT 300 (498)
Q Consensus 244 -------------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~ 300 (498)
+.+.+.+ ....|+++++++.+..+..+++++.+.+ .+|+ ++.+|.||.|.|..+..
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMV 159 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence 0011222 2346899999999999988777777765 4564 68999999999987654
No 388
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.41 E-value=0.00071 Score=68.67 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHH-HHCCCcEEEEeeCCCCCC--------CC--CHHHHHHHHHHHHhCCCEEEcCccEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIW-RGMGSTVDLLFRKELPLR--------GF--DDEMRAVVARNLEGRGINLHPRTTIKEL 268 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l-~~~g~~V~lv~~~~~~l~--------~~--~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 268 (498)
.+++|+|||+|+.|+.+|..| .+.|.+|+++++.+.+.. .. -..+...+.+.+...+++++.|..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 468999999999999999965 467999999999887532 11 124555555666667888875533311
Q ss_pred EEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 269 IKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 269 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
.++.++ -...+|.||+|+|..+.
T Consensus 117 -------Dvt~ee-L~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 -------DLKMEE-LRNHYNCVIFCCGASEV 139 (506)
T ss_pred -------ccCHHH-HHhcCCEEEEEcCCCCC
Confidence 011111 12368999999998754
No 389
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.40 E-value=0.0023 Score=64.72 Aligned_cols=98 Identities=27% Similarity=0.354 Sum_probs=75.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC------------------CCCCC-----------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP------------------LRGFD----------------------- 241 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~------------------l~~~~----------------------- 241 (498)
.|+|||+|+.|.-+|..+++.|.+|.++++++.+ .+.+.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~ 84 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV 84 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence 6999999999999999999999999999987632 11111
Q ss_pred ----------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEE-CCCeEEEcCEEEEecCCCcCC
Q 042564 242 ----------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVIT-DHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 242 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~-~~g~~i~~D~vi~a~G~~p~~ 300 (498)
..+-+++.+..++.|++++.++.+..+..++++..+.. .++.++.++.||.|.|.....
T Consensus 85 ~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 85 PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSAL 154 (396)
T ss_pred CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHH
Confidence 11233466777789999999999999998887755444 444679999999999976544
No 390
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.40 E-value=0.00094 Score=66.75 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=64.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCC-----CCCHHHH----H-------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPLR-----GFDDEMR----A------------------------- 246 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l~-----~~~~~~~----~------------------------- 246 (498)
.|+|||+|..|+.+|..|.+. |.+|.++++.+.+.+ .+..++. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 489999999999999999987 999999998763322 1111111 1
Q ss_pred ---------HHHHH-HHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 247 ---------VVARN-LEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 247 ---------~l~~~-l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+.+. +++.+..++++..|.++ +.++ +++.+|+++.+|.||.|.|..+..
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v--~~~~--v~l~dg~~~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL--DADG--VDLAPGTRINARSVIDCRGFKPSA 140 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEE--eCCE--EEECCCCEEEeeEEEECCCCCCCc
Confidence 11122 22223346778888888 3344 444788899999999999988653
No 391
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.37 E-value=0.0022 Score=55.64 Aligned_cols=42 Identities=33% Similarity=0.665 Sum_probs=34.9
Q ss_pred CCCEEE-cCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCC
Q 042564 255 RGINLH-PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 255 ~Gv~i~-~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.|+++. ...+|.++...+++..+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 355554 345899999888888899999999999999999996
No 392
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.0024 Score=65.32 Aligned_cols=133 Identities=18% Similarity=0.256 Sum_probs=84.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCc-EEEEeeCCCC----------------------CCC--C--------CHHHHHHH
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGST-VDLLFRKELP----------------------LRG--F--------DDEMRAVV 248 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~-V~lv~~~~~~----------------------l~~--~--------~~~~~~~l 248 (498)
.+|+|||+|.+|+-.|..|.+.|.. +.++++.+.+ ++. + -.++...+
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence 4799999999999999999999998 9999988621 010 1 01256677
Q ss_pred HHHHHhCCCE--EEcCccEEEEEEeC--CeEEEEECCCeE--EEcCEEEEecCC--CcCCCCCCcccCCceeCCCCCeEc
Q 042564 249 ARNLEGRGIN--LHPRTTIKELIKSE--EGVKVITDHGEE--IVADVVLFATGR--APNTKRLNLKAVGVEVDQTGAVKV 320 (498)
Q Consensus 249 ~~~l~~~Gv~--i~~~~~v~~i~~~~--~~~~v~~~~g~~--i~~D~vi~a~G~--~p~~~~l~l~~~gi~~~~~g~i~v 320 (498)
...+++.++. +..++.|..+..++ +...|+++++.. +.+|.||+|||. .|+...+ .|++.- .|.+.-
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~----~G~~~f-~g~~~H 163 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF----AGLDEF-KGRILH 163 (443)
T ss_pred HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC----CCccCC-CceEEc
Confidence 7777776554 34455555554444 357888887765 559999999996 3333221 222211 222222
Q ss_pred CC----CCCCCCCCeEEecccCC
Q 042564 321 DE----NSRTNVPSIWAVGDVTN 339 (498)
Q Consensus 321 d~----~~~t~~~~iya~GD~~~ 339 (498)
-. ...-.-++|-+||--+.
T Consensus 164 S~~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 164 SADWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred hhcCCCccccCCCeEEEECCCcc
Confidence 21 12335678999986654
No 393
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.35 E-value=0.0029 Score=65.83 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=29.2
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..+++|||+|++|+.+|..|++.|.+|+++|
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d 46 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVD 46 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3579999999999999999999999999999
No 394
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.35 E-value=0.00024 Score=76.74 Aligned_cols=33 Identities=36% Similarity=0.391 Sum_probs=31.1
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...+|+|||||++|++||+.|++.|++|+|+|+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~ 269 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEG 269 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999999999995
No 395
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.34 E-value=0.0013 Score=70.24 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
.+++|||||+.|+..|..+++.|.+|+|||
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe 342 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFE 342 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEe
Confidence 479999999999999999999999999999
No 396
>PRK02106 choline dehydrogenase; Validated
Probab=97.33 E-value=0.00023 Score=75.44 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=32.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHh-CCCcEEEEccC
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSAN-FGAKVGICELP 55 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek~ 55 (498)
|...||+||||||+||+.+|.+|++ .|.+|+|+|+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG 38 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG 38 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCC
Confidence 4456999999999999999999999 89999999954
No 397
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.33 E-value=0.0023 Score=65.81 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=52.1
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCc
Q 042564 227 VDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 227 V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
-.+..+++..+ .+..+.+.+....++.|+.++.++.|++|....++ ..|++.-|. +++..+|-|+|+..
T Consensus 174 g~Ly~P~DG~~--DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 174 GGLYSPGDGVM--DPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWA 243 (856)
T ss_pred eeeecCCCccc--CHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHH
Confidence 34555554332 23456778888889999999999999999766554 567777774 99999999999865
No 398
>PRK06126 hypothetical protein; Provisional
Probab=97.30 E-value=0.003 Score=66.90 Aligned_cols=99 Identities=20% Similarity=0.319 Sum_probs=72.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC------------------------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR------------------------------------------ 238 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~------------------------------------------ 238 (498)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+....
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 35799999999999999999999999999997752100
Q ss_pred --C-------C--------------------------C-HHHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeEEEEE--
Q 042564 239 --G-------F--------------------------D-DEMRAVVARNLEG-RGINLHPRTTIKELIKSEEGVKVIT-- 279 (498)
Q Consensus 239 --~-------~--------------------------~-~~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~v~~-- 279 (498)
. + + ..+.+.+.+.+++ .|+++++++.++++..+++++.+++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~ 166 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED 166 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence 0 0 0 0022234444444 4899999999999988777666655
Q ss_pred -CCCe--EEEcCEEEEecCCCcC
Q 042564 280 -DHGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 280 -~~g~--~i~~D~vi~a~G~~p~ 299 (498)
.+|+ ++.+|.||.|.|.++.
T Consensus 167 ~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 167 LDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred CCCCcEEEEEEEEEEecCCcchH
Confidence 3353 6899999999997664
No 399
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.29 E-value=0.00027 Score=73.35 Aligned_cols=31 Identities=35% Similarity=0.709 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
|||+|||+||+|+.+|..|++.|++|++||+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~ 31 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEI 31 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEec
Confidence 6999999999999999999999999999995
No 400
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.28 E-value=0.005 Score=65.19 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=33.9
Q ss_pred HhHHHHHHHHhCCcEEEEeE-EE-EE-eCCEEE---E-EeCCCceEEEEcCeEEEcCCCCC
Q 042564 124 LNGIYKRLLSNAGVKLYEGE-GK-IV-GPNEVE---V-TQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 124 ~~~~~~~~~~~~gv~~~~~~-~~-~i-~~~~~~---v-~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+...+.+.+.+.+|+++.++ +. .+ +.+.+. + ...+|....+.++.||||||.-.
T Consensus 121 i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 121 ILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred HHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 33444455556789998886 33 23 333332 2 23456667889999999999653
No 401
>PLN02487 zeta-carotene desaturase
Probab=97.27 E-value=0.00038 Score=73.05 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeC--Ce----EEEEE---CCCeEEEcCEEEEecCCC
Q 042564 240 FDDEMRAVVARNLEGRGINLHPRTTIKELIKSE--EG----VKVIT---DHGEEIVADVVLFATGRA 297 (498)
Q Consensus 240 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~----~~v~~---~~g~~i~~D~vi~a~G~~ 297 (498)
+...+.+.+.+.++++|++|++++.|++|..+. ++ ..+.+ .+++.+.+|.||+|++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 445688889999999999999999999998763 22 34555 334568999999999864
No 402
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.27 E-value=0.00034 Score=65.77 Aligned_cols=45 Identities=31% Similarity=0.378 Sum_probs=36.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCccccccc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCVI 73 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~~ 73 (498)
..+||+|||+|.|||.||.+|+..|++|+++|++. ...+||+..|
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg-------eqnlGGQAfW 48 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG-------EQNLGGQAFW 48 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccc-------cccccceeee
Confidence 35899999999999999999999999999999421 3456676544
No 403
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.26 E-value=0.0036 Score=63.19 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=71.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC--CC-----CC--------------------------------
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL--RG-----FD-------------------------------- 241 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l--~~-----~~-------------------------------- 241 (498)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .. +.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 3579999999999999999999999999999876310 00 00
Q ss_pred ---------------------HHHHHHHHHHHHhCCCEEEcCccEEEEEE-eCCeEEEEEC-CCe--EEEcCEEEEecCC
Q 042564 242 ---------------------DEMRAVVARNLEGRGINLHPRTTIKELIK-SEEGVKVITD-HGE--EIVADVVLFATGR 296 (498)
Q Consensus 242 ---------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~~~v~~~-~g~--~i~~D~vi~a~G~ 296 (498)
..+...+.+.+.+.|+.++++..+..+.. +++...|++. +|+ ++.+|+||-|-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCC
Confidence 01122344555566888888877776654 3445566664 675 6899999999998
Q ss_pred CcCCC
Q 042564 297 APNTK 301 (498)
Q Consensus 297 ~p~~~ 301 (498)
++..-
T Consensus 162 ~S~VR 166 (390)
T TIGR02360 162 HGVSR 166 (390)
T ss_pred chhhH
Confidence 77553
No 404
>PLN02612 phytoene desaturase
Probab=97.25 E-value=0.00033 Score=74.04 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCC
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
..+.+.+.+.+++.|++|+++++|++|..++++ ..+.+.+|+.+.+|.||+|++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 567788888888899999999999999875554 4477788888999999999863
No 405
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.24 E-value=0.0034 Score=70.89 Aligned_cols=102 Identities=20% Similarity=0.108 Sum_probs=70.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC----------C-CHHHHHHHHHHHHhC-CCEEEcCccEEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG----------F-DDEMRAVVARNLEGR-GINLHPRTTIKEL 268 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~----------~-~~~~~~~l~~~l~~~-Gv~i~~~~~v~~i 268 (498)
..+|+|||+|+.|+..|..+.+.|.+|++++..+.+-.. . ..++...+.+.++.. +++++.++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 468999999999999999999999999999987643211 1 123434455666656 5999999988877
Q ss_pred EEeCCeEEEE-----E----C---CC--eEEEcCEEEEecCCCcCCCC
Q 042564 269 IKSEEGVKVI-----T----D---HG--EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 269 ~~~~~~~~v~-----~----~---~g--~~i~~D~vi~a~G~~p~~~~ 302 (498)
........+. + . .+ ..+.+|.||+|||..|....
T Consensus 243 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~p 290 (985)
T TIGR01372 243 YDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLV 290 (985)
T ss_pred ecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCC
Confidence 4321111111 0 0 01 15889999999999876543
No 406
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.21 E-value=0.0048 Score=64.49 Aligned_cols=95 Identities=25% Similarity=0.322 Sum_probs=68.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC------------------CCCC---C--------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP------------------LRGF---D-------------------- 241 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~------------------l~~~---~-------------------- 241 (498)
.|+|||+|..|+++|..+++.|.+|.++++.... ...+ +
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 5899999999999999999999999999875311 0000 0
Q ss_pred -------------H-HHHHHHHHHHHhC-CCEEEcCccEEEEEEe-C-CeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 242 -------------D-EMRAVVARNLEGR-GINLHPRTTIKELIKS-E-EGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 -------------~-~~~~~l~~~l~~~-Gv~i~~~~~v~~i~~~-~-~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+ .+...+.+.+++. ++.++.+ .+.++..+ + ....|.+.+|..+.||.||+|+|...
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 0 1112345556665 7888765 66666544 3 33678888888999999999999875
No 407
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.20 E-value=0.0012 Score=70.01 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC-------C--CCCHHHHHHHHHHHHhCCCEEEcCccE-EEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL-------R--GFDDEMRAVVARNLEGRGINLHPRTTI-KELI 269 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l-------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v-~~i~ 269 (498)
..++|+|||+|++|+.+|..+++.|.+|+++++.+.+. + .++.++...-.+.+.+.|++++.++.+ .++.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 35799999999999999999999999999999765431 1 245555555556677889999988665 3321
Q ss_pred EeCCeEEEEECCCeEEEcCEEEEecCCCcCC
Q 042564 270 KSEEGVKVITDHGEEIVADVVLFATGRAPNT 300 (498)
Q Consensus 270 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 300 (498)
.+. ....+|.||+|+|..+..
T Consensus 216 ~~~----------~~~~~D~Vi~AtG~~~~~ 236 (564)
T PRK12771 216 LEQ----------LEGEFDAVFVAIGAQLGK 236 (564)
T ss_pred HHH----------HHhhCCEEEEeeCCCCCC
Confidence 110 012479999999987543
No 408
>PRK13984 putative oxidoreductase; Provisional
Probab=97.19 E-value=0.0012 Score=70.76 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=67.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-------CC--CCCHHHHHHHHHHHHhCCCEEEcCccEEEEEE
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-------LR--GFDDEMRAVVARNLEGRGINLHPRTTIKELIK 270 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-------l~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 270 (498)
..++|+|||+|+.|+..|..|.+.|.+|+++++.+.+ ++ .+..++.....+.+++.|++++.++.|..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 3578999999999999999999999999999887653 11 134555555567788899999999776320
Q ss_pred eCCeEEEEECCCeEEEcCEEEEecCCCc
Q 042564 271 SEEGVKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 271 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
+..++ ....+|.||+|+|..+
T Consensus 360 ------~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 ------IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred ------CCHHH-HHhcCCEEEEEcCcCC
Confidence 11111 1357999999999764
No 409
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.18 E-value=0.00049 Score=68.07 Aligned_cols=41 Identities=32% Similarity=0.373 Sum_probs=34.2
Q ss_pred CCccEEEECCChhHHHHHHHHHhCC-CcEEEEccCCCCCCCCcCCCccccc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFG-AKVGICELPFHPISSEVIGGVGGTC 71 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek~~~~~~~~~~~~~GG~~ 71 (498)
...+|||||||.||++||.+|-+.| .+|+|+|. ...+||..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa---------~dRIGGRI 61 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEA---------SDRIGGRI 61 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEe---------ccccCceE
Confidence 4568999999999999999999755 59999995 56677764
No 410
>PLN03000 amine oxidase
Probab=97.13 E-value=0.00053 Score=74.23 Aligned_cols=33 Identities=36% Similarity=0.478 Sum_probs=30.9
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...+|+|||||++|+.+|..|++.|++|+|+|+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~ 215 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEG 215 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEc
Confidence 357999999999999999999999999999995
No 411
>PLN02976 amine oxidase
Probab=97.09 E-value=0.00061 Score=76.57 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=36.0
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCCCCCCCcCCCcccccc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSEVIGGVGGTCV 72 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~~~~~~~~~~~GG~~~ 72 (498)
..+||+|||||++|+++|+.|++.|++|+|+|+ ...+||.|.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa---------~~~vGGri~ 733 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEA---------RSRIGGRVY 733 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEee---------ccCCCCcee
Confidence 357999999999999999999999999999995 445677653
No 412
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.02 E-value=0.00064 Score=71.32 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=33.1
Q ss_pred cCCCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 19 QTHFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 19 ~~~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
.|..+||+||||+|++|...|.+|++.|.+|+|+|.
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEa 38 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEA 38 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeC
Confidence 455679999999999999999999999999999994
No 413
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.00 E-value=0.00082 Score=68.67 Aligned_cols=94 Identities=31% Similarity=0.386 Sum_probs=27.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC------------C--------------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL------------R-------------------------------- 238 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l------------~-------------------------------- 238 (498)
.|+|||||+.|+-.|...++.|.+|.|+++.+.+- .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 48999999999999999999999999999987431 0
Q ss_pred -----CCCHH-HHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECC--C-eEEEcCEEEEecCC
Q 042564 239 -----GFDDE-MRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDH--G-EEIVADVVLFATGR 296 (498)
Q Consensus 239 -----~~~~~-~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~--g-~~i~~D~vi~a~G~ 296 (498)
.++++ ....+.+.+.+.|+++++++.|.++..+++. ..|++.+ | .++.++.+|-|||.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01111 1123456666789999999999999887654 3444432 3 47899999999994
No 414
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.98 E-value=0.012 Score=59.58 Aligned_cols=97 Identities=21% Similarity=0.245 Sum_probs=65.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC------------C--CCH--------------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR------------G--FDD-------------------------- 242 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~------------~--~~~-------------------------- 242 (498)
+|+|||+|+.|+-+|..+++.|.+|.++++...... . +.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 589999999999999999999999999998643100 0 000
Q ss_pred ------------HHHHHHHHHHHhCCCEEEcCccEEEEEE---eCCeEEEEE--CC-----C--eEEEcCEEEEecCCCc
Q 042564 243 ------------EMRAVVARNLEGRGINLHPRTTIKELIK---SEEGVKVIT--DH-----G--EEIVADVVLFATGRAP 298 (498)
Q Consensus 243 ------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~---~~~~~~v~~--~~-----g--~~i~~D~vi~a~G~~p 298 (498)
.+-+.+.+...+.|++++.++ +..+.. .++...+++ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 011224455667799998774 666642 123344443 21 3 3689999999999877
Q ss_pred CC
Q 042564 299 NT 300 (498)
Q Consensus 299 ~~ 300 (498)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 55
No 415
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.98 E-value=0.0019 Score=70.52 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
.+++|+|||+|+.|+.+|..|.+.|.+|+++++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 4689999999999999999999999999999974
No 416
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.97 E-value=0.004 Score=63.94 Aligned_cols=53 Identities=30% Similarity=0.431 Sum_probs=38.8
Q ss_pred HHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 248 VARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
|.+...+.||+++.+ .|..+..++++ ..|.+.+|+++.+|.+|-|+|+.....
T Consensus 160 L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~ 214 (454)
T PF04820_consen 160 LRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLA 214 (454)
T ss_dssp HHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCC
T ss_pred HHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhh
Confidence 566777889999988 57777666555 578889999999999999999976553
No 417
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.91 E-value=0.0056 Score=56.35 Aligned_cols=93 Identities=19% Similarity=0.257 Sum_probs=68.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC----------C----------CHHHHHH---------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG----------F----------DDEMRAV--------------- 247 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~----------~----------~~~~~~~--------------- 247 (498)
+|+|||+|..|+-+|..|+..|.+|++++++..+-.+ + ++.+...
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 6899999999999999999999999999987632100 1 1111111
Q ss_pred ---------------------------HHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe-EEEcCEEEEecCC
Q 042564 248 ---------------------------VARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE-EIVADVVLFATGR 296 (498)
Q Consensus 248 ---------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~i~~D~vi~a~G~ 296 (498)
+.+.| ....++.++++|+++...++..++.+++|. ...+|.|++++..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCC
Confidence 22222 335778889999999888878899986665 5779999999765
No 418
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.91 E-value=0.00099 Score=65.34 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEECCCeEEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
..++..+.+.+++.|-+|.++++|++|.-+.+. ..|.++||+++.+..|+..++..-
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWD 321 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHH
Confidence 568888999999999999999999999887754 789999999999988887776543
No 419
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.86 E-value=0.019 Score=60.08 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=72.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC-----C--C--------------------------------C-
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR-----G--F--------------------------------D- 241 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~-----~--~--------------------------------~- 241 (498)
-.|+|||+|..|+-.|..+++.|.+|.++++.+..-. . + +
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~ 141 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK 141 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 3699999999999999999999999999987653100 0 0 0
Q ss_pred ------------------------------------------------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCC
Q 042564 242 ------------------------------------------------DEMRAVVARNLEGRGINLHPRTTIKELIKSEE 273 (498)
Q Consensus 242 ------------------------------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~ 273 (498)
..+.+.+.+.+++.|+++++++.++++..+++
T Consensus 142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g 221 (506)
T PRK06481 142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG 221 (506)
T ss_pred HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC
Confidence 11334455666778999999999999986554
Q ss_pred e---EEEEECCCe--EEEcCEEEEecC-CCcCCCC
Q 042564 274 G---VKVITDHGE--EIVADVVLFATG-RAPNTKR 302 (498)
Q Consensus 274 ~---~~v~~~~g~--~i~~D~vi~a~G-~~p~~~~ 302 (498)
. +.+...+++ .+.++.||+|+| +.+|.++
T Consensus 222 ~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m 256 (506)
T PRK06481 222 KVTGVKVKINGKETKTISSKAVVVTTGGFGANKDM 256 (506)
T ss_pred EEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHH
Confidence 3 233334433 588999999997 7777665
No 420
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.80 E-value=0.016 Score=60.62 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=37.3
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCeEEEEECC---Ce--EEEcCEEEEecCCCc
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEGVKVITDH---GE--EIVADVVLFATGRAP 298 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~i~~D~vi~a~G~~p 298 (498)
...+.|++++.+++|.++..+++.+.+.+.+ |+ ++.++.||.|+|...
T Consensus 164 ~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 164 DAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 3556799999999999998776666565543 43 689999999999754
No 421
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.78 E-value=0.0042 Score=62.50 Aligned_cols=34 Identities=26% Similarity=0.197 Sum_probs=31.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
+|+|||||..|+|+|..|++.|.+|+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999976653
No 422
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.76 E-value=0.024 Score=58.23 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCC------------C--CCHH----------------------
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLR------------G--FDDE---------------------- 243 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~------------~--~~~~---------------------- 243 (498)
..-+|+|||+|+.|.-+|..|++.|.+|.++++...... . +.++
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 345899999999999999999999999999998742100 0 0111
Q ss_pred ----------------HHHHHHHHHHhCCCEEEcCccEEEEEEe---CCeEEEEECC-------C--eEEEcCEEEEecC
Q 042564 244 ----------------MRAVVARNLEGRGINLHPRTTIKELIKS---EEGVKVITDH-------G--EEIVADVVLFATG 295 (498)
Q Consensus 244 ----------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~---~~~~~v~~~~-------g--~~i~~D~vi~a~G 295 (498)
+-+.+.+...+.|++++.+ .+.++... ++.+.+.+.+ | .++.+|.||-|.|
T Consensus 118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG 196 (450)
T PLN00093 118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADG 196 (450)
T ss_pred ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence 1123445566779999765 46666532 2234454422 3 4799999999999
Q ss_pred CCcCC
Q 042564 296 RAPNT 300 (498)
Q Consensus 296 ~~p~~ 300 (498)
..+..
T Consensus 197 ~~S~v 201 (450)
T PLN00093 197 ANSRV 201 (450)
T ss_pred cchHH
Confidence 76544
No 423
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.72 E-value=0.025 Score=58.13 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCEEEcCccEEEEEEeCC-e---EEEEECCCe--EEEcCEEEEecCC-CcCCCC
Q 042564 246 AVVARNLEGRGINLHPRTTIKELIKSEE-G---VKVITDHGE--EIVADVVLFATGR-APNTKR 302 (498)
Q Consensus 246 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~---~~v~~~~g~--~i~~D~vi~a~G~-~p~~~~ 302 (498)
+.+.+.+++.|+++++++.++++..+++ . +.+...+++ .+.++.||+|+|- ..|.++
T Consensus 134 ~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m 197 (439)
T TIGR01813 134 QKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEM 197 (439)
T ss_pred HHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHH
Confidence 4455566778999999999999987543 2 233334454 4789999999994 444443
No 424
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.68 E-value=0.0054 Score=60.89 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=60.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC----------CCCCHH---HHHHHHHHHHhCCCEEEcCccEEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL----------RGFDDE---MRAVVARNLEGRGINLHPRTTIKE 267 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l----------~~~~~~---~~~~l~~~l~~~Gv~i~~~~~v~~ 267 (498)
.++++|||||..|++.|..|++.|.+|+++++.+.+- |..|-. +...+.+.-...+|++++.++|.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 5799999999999999999999999999999988642 221111 112233444456899999999999
Q ss_pred EEEeCCeEEEEECC
Q 042564 268 LIKSEEGVKVITDH 281 (498)
Q Consensus 268 i~~~~~~~~v~~~~ 281 (498)
+.+.-+..+|....
T Consensus 204 v~G~vGnF~vki~k 217 (622)
T COG1148 204 VSGSVGNFTVKIEK 217 (622)
T ss_pred ecccccceEEEEec
Confidence 98776666666543
No 425
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.66 E-value=0.012 Score=61.58 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=76.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCcEEEEeeCCCC----------CCC--CCHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM---GSTVDLLFRKELP----------LRG--FDDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~---g~~V~lv~~~~~~----------l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
.+++|||.|..|.-+...+.+. -..+|++...+++ ++. --+++.-.-.+..+++||+++.+..+.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~ 83 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI 83 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence 5799999999999998888874 3467777654432 111 123344445677889999999999999
Q ss_pred EEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCCC
Q 042564 267 ELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKRL 303 (498)
Q Consensus 267 ~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l 303 (498)
.|... ...|+++.|.++.+|.+|+|||..|....+
T Consensus 84 ~idr~--~k~V~t~~g~~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 84 QIDRA--NKVVTTDAGRTVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred EeccC--cceEEccCCcEeecceeEEecCccccccCC
Confidence 99654 356888899999999999999999998764
No 426
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.66 E-value=0.002 Score=62.93 Aligned_cols=31 Identities=29% Similarity=0.545 Sum_probs=27.0
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCc--EEEEcc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAK--VGICEL 54 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~--V~lvek 54 (498)
.+|+|+|||++||++|++|++++.+ |+|+|+
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea 44 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEA 44 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEec
Confidence 5899999999999999999997765 566994
No 427
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.021 Score=51.06 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=70.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC--------C--------CCCC-----CCHHHHHHHHHHHHhCCCEEE
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE--------L--------PLRG-----FDDEMRAVVARNLEGRGINLH 260 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~--------~--------~l~~-----~~~~~~~~l~~~l~~~Gv~i~ 260 (498)
.+|+|||+|+.+...|..+.+...+-.+++-.- . -+|. ..+++.+.+++...+.|.+++
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~ 88 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEII 88 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceee
Confidence 589999999999999888877644433333110 0 1222 467899999999999999998
Q ss_pred cCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcCCCC
Q 042564 261 PRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 261 ~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.. .|.++.....-..+.+ +.+.+.+|.||+|||.....-.
T Consensus 89 tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~ 128 (322)
T KOG0404|consen 89 TE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH 128 (322)
T ss_pred ee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee
Confidence 77 6777766555555555 4446899999999997655443
No 428
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.57 E-value=0.029 Score=60.20 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=68.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCcEEEEeeCCCCCCC-----------------------------------C-----
Q 042564 202 KRAVVLGGGYIAVEFASIWRGM-GSTVDLLFRKELPLRG-----------------------------------F----- 240 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~-g~~V~lv~~~~~~l~~-----------------------------------~----- 240 (498)
-+|+|||+|+.|+-+|..|+++ |.+|.++++.+..... +
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~~ 112 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDPA 112 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCCc
Confidence 4799999999999999999995 9999999877521000 0
Q ss_pred --------------------------C-HHHHHHHHHHHHhCC--CEEEcCccEEEEEEeCC---eEEEEEC------CC
Q 042564 241 --------------------------D-DEMRAVVARNLEGRG--INLHPRTTIKELIKSEE---GVKVITD------HG 282 (498)
Q Consensus 241 --------------------------~-~~~~~~l~~~l~~~G--v~i~~~~~v~~i~~~~~---~~~v~~~------~g 282 (498)
. ..+.+.+.+.+.+.| +.+++++++++++.+++ .+.+++. +|
T Consensus 113 ~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g 192 (634)
T PRK08294 113 DPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEG 192 (634)
T ss_pred cccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCC
Confidence 0 013333455565555 57788999999976542 3666664 35
Q ss_pred --eEEEcCEEEEecCCCc
Q 042564 283 --EEIVADVVLFATGRAP 298 (498)
Q Consensus 283 --~~i~~D~vi~a~G~~p 298 (498)
+++.+|+||-|-|.++
T Consensus 193 ~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 193 EEETVRAKYVVGCDGARS 210 (634)
T ss_pred ceEEEEeCEEEECCCCch
Confidence 5799999999999754
No 429
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.55 E-value=0.034 Score=57.63 Aligned_cols=99 Identities=25% Similarity=0.326 Sum_probs=68.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC-C--------------CC--------C-----------------C-
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP-L--------------RG--------F-----------------D- 241 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~-l--------------~~--------~-----------------~- 241 (498)
.|+|||+|..|+-.|..+++.|.+|.++++.+.. . .. . +
T Consensus 6 DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (466)
T PRK08274 6 DVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRTDE 85 (466)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCCCH
Confidence 6999999999999999999999999999876420 0 00 0 0
Q ss_pred ---------------------------------------------HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-E
Q 042564 242 ---------------------------------------------DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG-V 275 (498)
Q Consensus 242 ---------------------------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~ 275 (498)
..+...+.+.+++.|++++.+++++++..+++. .
T Consensus 86 ~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~ 165 (466)
T PRK08274 86 ALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFV 165 (466)
T ss_pred HHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEE
Confidence 112233445566789999999999999875554 3
Q ss_pred EEEE--CCC--eEEEcCEEEEecCC-CcCCC
Q 042564 276 KVIT--DHG--EEIVADVVLFATGR-APNTK 301 (498)
Q Consensus 276 ~v~~--~~g--~~i~~D~vi~a~G~-~p~~~ 301 (498)
.+.. .++ ..+.++.||+|+|- ..|.+
T Consensus 166 gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~ 196 (466)
T PRK08274 166 GARAGSAAGGAERIRAKAVVLAAGGFESNRE 196 (466)
T ss_pred EEEEEccCCceEEEECCEEEECCCCCCCCHH
Confidence 3433 233 35789999999984 44443
No 430
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.53 E-value=0.045 Score=56.63 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=28.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
..|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46899999999999999999999999998874
No 431
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.52 E-value=0.029 Score=50.37 Aligned_cols=101 Identities=27% Similarity=0.354 Sum_probs=65.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCC-------CC--------H-----------------------H
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRG-------FD--------D-----------------------E 243 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~-------~~--------~-----------------------~ 243 (498)
-.|+|||+|+.|+-+|..|++.|.+|.+++++..+-.. |. . +
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~~ 97 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSVE 97 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHHH
Confidence 47999999999999999999999999999987643100 10 1 1
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeC-Ce-EEEEE------CCC-----eEEEcCEEEEecCCCcCCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSE-EG-VKVIT------DHG-----EEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~-~~v~~------~~g-----~~i~~D~vi~a~G~~p~~~~ 302 (498)
....+....-+.|++++....|.++...+ ++ ..+.. ..| -.+.+..||-|||...+.-.
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~ 169 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVR 169 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTS
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHH
Confidence 22223344445899999999999987665 44 22322 122 37899999999999877654
No 432
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.51 E-value=0.00096 Score=58.71 Aligned_cols=32 Identities=41% Similarity=0.525 Sum_probs=28.7
Q ss_pred CccEEEECCChhHHHHHHHHHh--CCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSAN--FGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lvek 54 (498)
..||+|||+|.+||+||+..++ +..+|.+||.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~ 109 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIES 109 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEe
Confidence 3599999999999999999985 7789999993
No 433
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.41 E-value=0.0028 Score=66.73 Aligned_cols=31 Identities=29% Similarity=0.250 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHHhCC-CcEEEEccC
Q 042564 25 DLFVIGAGSGGVRAARFSANFG-AKVGICELP 55 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g-~~V~lvek~ 55 (498)
|+||||||.||+.+|.+|++.+ .+|+|+|+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG 32 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAG 32 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecC
Confidence 8999999999999999999988 699999954
No 434
>PLN02785 Protein HOTHEAD
Probab=96.39 E-value=0.0042 Score=65.76 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=30.2
Q ss_pred CCCccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 21 HFDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 21 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...||+||||||.||+.+|.+|++ +.+|+|+|+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~ 85 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLER 85 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEec
Confidence 346999999999999999999999 699999994
No 435
>PLN02985 squalene monooxygenase
Probab=96.35 E-value=0.043 Score=57.37 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=29.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++..
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 479999999999999999999999999998764
No 436
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=96.34 E-value=0.027 Score=53.59 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=43.4
Q ss_pred HHHHHHhCCCEEEcCccEEEEEE---eCCeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 248 VARNLEGRGINLHPRTTIKELIK---SEEGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 248 l~~~l~~~Gv~i~~~~~v~~i~~---~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
++..+++.|+.++.+..+..+.. ++..+.|.+.+|..+.++.+|+++|..-|.-
T Consensus 159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~kl 215 (399)
T KOG2820|consen 159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKL 215 (399)
T ss_pred HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhh
Confidence 45677788999999998887763 3334788899999999999999999766553
No 437
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=0.01 Score=60.05 Aligned_cols=93 Identities=30% Similarity=0.377 Sum_probs=64.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC------------------------------------------CC-
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL------------------------------------------RG- 239 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l------------------------------------------~~- 239 (498)
.|+|||||..|+|.|.+.+++|+++.+++....-+ ..
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~s 85 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNSS 85 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccCC
Confidence 69999999999999999999999988877543110 00
Q ss_pred -----------CCHH-HHHHHHHHHHh-CCCEEEcCccEEEEEEeCC--eEEEEECCCeEEEcCEEEEecCC
Q 042564 240 -----------FDDE-MRAVVARNLEG-RGINLHPRTTIKELIKSEE--GVKVITDHGEEIVADVVLFATGR 296 (498)
Q Consensus 240 -----------~~~~-~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~D~vi~a~G~ 296 (498)
.|.. ..+.+++.++. .++.++.+ .|.++..+++ ...|++.+|..+.|+.||++||.
T Consensus 86 KGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 86 KGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 0111 12223444443 37877766 5556554333 37788999999999999999984
No 438
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.28 E-value=0.046 Score=55.70 Aligned_cols=56 Identities=27% Similarity=0.445 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecCCCcC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATGRAPN 299 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G~~p~ 299 (498)
+.+.+.+.+++.|+++++++.++++..+++. ..+.. .+|+ .+.++.||+|+|-...
T Consensus 143 ~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 143 LIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3444667788889999999999999887765 33333 3555 5779999999997665
No 439
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.20 E-value=0.045 Score=54.35 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=64.0
Q ss_pred HHHHHHHHHCCCcEEEEeeCCCCCCC--CCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC-eEEEcCEE
Q 042564 214 VEFASIWRGMGSTVDLLFRKELPLRG--FDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG-EEIVADVV 290 (498)
Q Consensus 214 ~e~a~~l~~~g~~V~lv~~~~~~l~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~i~~D~v 290 (498)
-++..+|.++|.... .++..+++|. -..++.+.+.+.+++.||++++++.|.+| ++++..+.+.++ ..+.+|.|
T Consensus 57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~v 133 (376)
T TIGR03862 57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAV 133 (376)
T ss_pred HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEE
Confidence 356678888887643 4555666664 56789999999999999999999999999 334466666543 46999999
Q ss_pred EEecCCCcCC
Q 042564 291 LFATGRAPNT 300 (498)
Q Consensus 291 i~a~G~~p~~ 300 (498)
|+|+|-.+..
T Consensus 134 IlAtGG~s~p 143 (376)
T TIGR03862 134 VLALGGASWS 143 (376)
T ss_pred EEcCCCcccc
Confidence 9999976543
No 440
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.16 E-value=0.0052 Score=63.55 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHh-CCCcEEEEcc
Q 042564 20 THFDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL 54 (498)
Q Consensus 20 ~~~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lvek 54 (498)
...+||.||||||.||+..|.+|++ ..++|+|+|+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEa 89 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEA 89 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEec
Confidence 4467999999999999999999999 6789999994
No 441
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.11 E-value=0.0029 Score=63.48 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=32.4
Q ss_pred CCccEEEECCChhHHHHHHHHHhCCCcEEEEccCCC
Q 042564 22 FDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFH 57 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek~~~ 57 (498)
.+|||+|||||..|..+|+-++-+|++|.|||+..+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF 101 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDF 101 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccc
Confidence 359999999999999999999999999999995433
No 442
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.08 E-value=0.012 Score=42.96 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=28.2
Q ss_pred EEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 206 VLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 206 ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 7999999999999999999999999998864
No 443
>PRK07121 hypothetical protein; Validated
Probab=96.05 E-value=0.085 Score=55.06 Aligned_cols=53 Identities=26% Similarity=0.332 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCEEEcCccEEEEEEeCC-e-EEEEEC-CCe--EEEc-CEEEEecCCCc
Q 042564 246 AVVARNLEGRGINLHPRTTIKELIKSEE-G-VKVITD-HGE--EIVA-DVVLFATGRAP 298 (498)
Q Consensus 246 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~-~~v~~~-~g~--~i~~-D~vi~a~G~~p 298 (498)
+.+.+.+++.|+++++++.++++..+++ . ..|... +++ .+.+ +.||+|+|-..
T Consensus 181 ~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 181 DPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3445556677899999999999876543 2 334332 332 5778 99999999544
No 444
>PRK07804 L-aspartate oxidase; Provisional
Probab=95.95 E-value=0.094 Score=55.35 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeCC-e-EEEEE-------CCC-eEEEcCEEEEecCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSEE-G-VKVIT-------DHG-EEIVADVVLFATGR 296 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~-~~v~~-------~~g-~~i~~D~vi~a~G~ 296 (498)
+...+.+.+++.||+++.++.+.++..+++ . ..+.. .++ ..+.++.||+|+|-
T Consensus 146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 146 VQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 334455556667889988989999876543 2 23322 233 36889999999985
No 445
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.84 E-value=0.039 Score=54.13 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=31.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKEL 235 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~ 235 (498)
.+|+|||||..|+-.|..|.+.|.+|.+++..+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 5799999999999999999999999999988653
No 446
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.82 E-value=0.13 Score=54.75 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=27.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
.|+|||+|..|+-.|..+++.|.+|.++++..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 38899999999999999999999999988653
No 447
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.80 E-value=0.14 Score=52.35 Aligned_cols=56 Identities=14% Similarity=0.369 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHh-CCCEEEcCccEEEEEEeCCe-EEEE-ECCCe--EEEcCEEEEecCCCc
Q 042564 243 EMRAVVARNLEG-RGINLHPRTTIKELIKSEEG-VKVI-TDHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 243 ~~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~-~~v~-~~~g~--~i~~D~vi~a~G~~p 298 (498)
.+.+.+.+.+++ .||++++++.+.++..+++. ..+. ..+++ .+.++.||+|+|-..
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 455556666654 49999999999998765554 3322 23443 588999999999643
No 448
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.69 E-value=0.15 Score=54.28 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEE---EECCCe--EEEcCEEEEecCCCc
Q 042564 246 AVVARNLEGRGINLHPRTTIKELIKSEEG-VKV---ITDHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 246 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v---~~~~g~--~i~~D~vi~a~G~~p 298 (498)
..+.+.+++.||+++.++.+.++..+++. ..+ ...+|+ .+.++.||+|||-..
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 33455566678999999999998765543 222 234554 588999999999754
No 449
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.63 E-value=0.19 Score=53.89 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHhCC-CEEEcCccEEEEEEeCCe-EEE---EECCCe--EEEcCEEEEecCC
Q 042564 248 VARNLEGRG-INLHPRTTIKELIKSEEG-VKV---ITDHGE--EIVADVVLFATGR 296 (498)
Q Consensus 248 l~~~l~~~G-v~i~~~~~v~~i~~~~~~-~~v---~~~~g~--~i~~D~vi~a~G~ 296 (498)
+.+.+++.+ |+++.++.+.++..+++. ..+ ...+++ .+.++.||+|+|-
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence 334555555 999999999998765554 223 234554 6889999999994
No 450
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.63 E-value=0.1 Score=53.71 Aligned_cols=31 Identities=35% Similarity=0.621 Sum_probs=29.5
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
...++|||+|..|+++|..|++.|++|+++|
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d 35 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTD 35 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3679999999999999999999999999999
No 451
>PTZ00367 squalene epoxidase; Provisional
Probab=95.61 E-value=0.1 Score=55.02 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=30.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
-+|+|||+|+.|+-+|..|++.|.+|+++++..
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 479999999999999999999999999999864
No 452
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.042 Score=52.46 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=74.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEe-eC-C---------CCC---CCCCHHHHHHHHHHHHhCCCEEEcCccEE
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLF-RK-E---------LPL---RGFDDEMRAVVARNLEGRGINLHPRTTIK 266 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~-~~-~---------~~l---~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 266 (498)
+-.|+|||||+.|.-.|-+-++.|.+.-++. |- . .++ ....+.+...+.+..++..|+++.-....
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence 5689999999999999888888776654332 10 0 111 12567899999999999999999887888
Q ss_pred EEEEe---CCeEEEEECCCeEEEcCEEEEecCCC
Q 042564 267 ELIKS---EEGVKVITDHGEEIVADVVLFATGRA 297 (498)
Q Consensus 267 ~i~~~---~~~~~v~~~~g~~i~~D~vi~a~G~~ 297 (498)
.++.. ++-..|++.+|-.+.+..+|++||.+
T Consensus 291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 291 KLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred cceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 87764 33488999999999999999999964
No 453
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.54 E-value=0.17 Score=52.71 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=38.4
Q ss_pred HHHHHHHHHHh-CCCEEEcCccEEEEEEeCCe-EEEEECC-C--eEEEcCEEEEecCCCcC
Q 042564 244 MRAVVARNLEG-RGINLHPRTTIKELIKSEEG-VKVITDH-G--EEIVADVVLFATGRAPN 299 (498)
Q Consensus 244 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~-~~v~~~~-g--~~i~~D~vi~a~G~~p~ 299 (498)
+.+.+.+.+++ .||+++.++.+.++..+++. ..+...+ + ..+.++.||+|+|-...
T Consensus 130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 130 VITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 34445555665 58999999999998765544 2243322 3 36889999999997654
No 454
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.54 E-value=0.051 Score=56.03 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=58.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD 280 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~ 280 (498)
.++++|+|+|.+|+.+|..|.+.|.+|+++++... +.+ +...+.+.+.|++++.+......
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~~~~------------ 65 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE------DQL-KEALEELGELGIELVLGEYPEEF------------ 65 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcchhH------------
Confidence 57999999999999999999999999999987541 223 22334466668877655333210
Q ss_pred CCeEEEcCEEEEecCCCcCCCC
Q 042564 281 HGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 281 ~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
.-.+|.||.++|..|+...
T Consensus 66 ---~~~~d~vv~~~g~~~~~~~ 84 (450)
T PRK14106 66 ---LEGVDLVVVSPGVPLDSPP 84 (450)
T ss_pred ---hhcCCEEEECCCCCCCCHH
Confidence 1247999999999877764
No 455
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.53 E-value=0.02 Score=57.87 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEEECCCeEEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVITDHGEEIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p 298 (498)
.++.+.+-+...-.|-.+++++.|.+|..++++ ..|. .+|+++.|+.||....+-|
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~dpsy~p 289 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIGDPSYLP 289 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEEEGGGBG
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEECCccCc
Confidence 378888888888889999999999999876554 3343 4888999999998877766
No 456
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.067 Score=53.26 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=28.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRK 233 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~ 233 (498)
.|+|||||..|+|.|.+-++.|.+.++++.+
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 7999999999999999999999998888754
No 457
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.39 E-value=0.02 Score=55.86 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.9
Q ss_pred CCccEEEECCChhHHHHHHHHHh----CCCcEEEEcc
Q 042564 22 FDFDLFVIGAGSGGVRAARFSAN----FGAKVGICEL 54 (498)
Q Consensus 22 ~~~dvvIIGgG~aGl~aA~~l~~----~g~~V~lvek 54 (498)
..|||+|+||||.|++.|..|.. ..+||.|+|.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~ 71 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDA 71 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEec
Confidence 37999999999999999999986 4579999993
No 458
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.37 E-value=0.2 Score=50.37 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=61.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC---CcEEEEeeCCCCC-------------------------CCCCHHHHHHHHHH--
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMG---STVDLLFRKELPL-------------------------RGFDDEMRAVVARN-- 251 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g---~~V~lv~~~~~~l-------------------------~~~~~~~~~~l~~~-- 251 (498)
.+|+|||+|++|+.+|..|.+.- ..|+++++.+.+. +..+.+..+++.+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999998752 1388888766321 11122233333221
Q ss_pred --------------------------------HHhCC---CEEEcCccEEEEEEe--CCeEEEEECCCeEEEcCEEEEec
Q 042564 252 --------------------------------LEGRG---INLHPRTTIKELIKS--EEGVKVITDHGEEIVADVVLFAT 294 (498)
Q Consensus 252 --------------------------------l~~~G---v~i~~~~~v~~i~~~--~~~~~v~~~~g~~i~~D~vi~a~ 294 (498)
+++.- +.++ .++...+... ..+..+...+|+...||.+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 11111 3332 2344444444 33466777889999999999999
Q ss_pred CCCcCCCC
Q 042564 295 GRAPNTKR 302 (498)
Q Consensus 295 G~~p~~~~ 302 (498)
|..+....
T Consensus 161 gh~~~~~~ 168 (474)
T COG4529 161 GHSAPPAD 168 (474)
T ss_pred cCCCCCcc
Confidence 98766553
No 459
>PRK08275 putative oxidoreductase; Provisional
Probab=95.36 E-value=0.24 Score=52.47 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEEe-CCe-EEEE---ECCCe--EEEcCEEEEecCCCc
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIKS-EEG-VKVI---TDHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~-~~v~---~~~g~--~i~~D~vi~a~G~~p 298 (498)
.+.+.+.+.+++.||+++.++.+.++..+ ++. ..+. ..+|+ .+.++.||+|||-..
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 56677777788889999999999999765 333 2332 33564 478999999999754
No 460
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.33 E-value=0.048 Score=60.03 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=30.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGM--GSTVDLLFRKEL 235 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~ 235 (498)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 889999998874
No 461
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.22 E-value=0.3 Score=48.57 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=37.9
Q ss_pred HhHHHHHHHHhCCcEEEEeE-EEEEeCCEEEEEeCCCceEEEEcCeEEEcCCCCC
Q 042564 124 LNGIYKRLLSNAGVKLYEGE-GKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRA 177 (498)
Q Consensus 124 ~~~~~~~~~~~~gv~~~~~~-~~~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p 177 (498)
+...+...+++.||+++.++ +..++...+.+...++ ...+++|+||||||+.+
T Consensus 88 Vv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~-~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 88 LLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDG-QSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCC-ceEEecCEEEEcCCCcc
Confidence 34445566778899999987 5567565677765433 23689999999999754
No 462
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.18 E-value=0.24 Score=52.44 Aligned_cols=57 Identities=28% Similarity=0.321 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe--EEEE--E-CCCe--EEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSEEG--VKVI--T-DHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~--~-~~g~--~i~~D~vi~a~G~~p 298 (498)
..+...+.+.+++.||++++++.+.++..++++ ..+. . .+|+ .+.++.||+|||-..
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 445566667777789999999999998766543 2232 2 4564 578999999999644
No 463
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.08 E-value=0.34 Score=52.20 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=34.0
Q ss_pred HHHhCCCEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecCCC
Q 042564 251 NLEGRGINLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 251 ~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G~~ 297 (498)
.+++.||+++.++.+.++..+++. ..|.. .+|+ .+.++.||+|||-.
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 455678999999999998765544 33433 2454 58899999999963
No 464
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.05 E-value=0.31 Score=51.75 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecCC
Q 042564 245 RAVVARNLEGRGINLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATGR 296 (498)
Q Consensus 245 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G~ 296 (498)
...+.+.+.+.||+++.++.++++..+++. ..+.. .+++ .+.++.||+|||-
T Consensus 139 ~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 139 LHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 334555556678999999999998876554 33332 2343 5789999999994
No 465
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.03 E-value=0.15 Score=49.93 Aligned_cols=49 Identities=12% Similarity=0.216 Sum_probs=36.8
Q ss_pred HHHHhCCcEEEEeE-EE--EEeCCEEEEEeCCCceEEEEcCeEEEcCCCCCCCC
Q 042564 130 RLLSNAGVKLYEGE-GK--IVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRA 180 (498)
Q Consensus 130 ~~~~~~gv~~~~~~-~~--~i~~~~~~v~~~~g~~~~~~~d~liiAtG~~p~~p 180 (498)
.-+++.||+++.+. +. ..+...+.+.+++|. +++.|.+|+|+|-.|+.-
T Consensus 401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~--~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGS--ELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred HHHHhcCceeccchhhhhhhhhccceEEEecCCC--eeeeeeEEEEecCCCchh
Confidence 33456788888764 22 235667888888987 899999999999998754
No 466
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.91 E-value=0.37 Score=51.80 Aligned_cols=40 Identities=30% Similarity=0.418 Sum_probs=28.8
Q ss_pred CEEEcCccEEEEEEeCCe-EEEE---ECCCe--EEEcCEEEEecCC
Q 042564 257 INLHPRTTIKELIKSEEG-VKVI---TDHGE--EIVADVVLFATGR 296 (498)
Q Consensus 257 v~i~~~~~v~~i~~~~~~-~~v~---~~~g~--~i~~D~vi~a~G~ 296 (498)
|+++.++.+.++..+++. ..+. ..+++ .+.++.||+|||-
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 889999889888765543 2222 23554 5789999999995
No 467
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.83 E-value=0.19 Score=49.27 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=28.3
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
++.|||.|.-||..|.-+++.|++|+.+|
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vD 30 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVD 30 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEe
Confidence 68999999999999999999999999999
No 468
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=94.81 E-value=0.3 Score=49.99 Aligned_cols=59 Identities=12% Similarity=0.215 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEe--CCe-EEEEEC-CCeEEEcCEEEEecC-CCcCCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKS--EEG-VKVITD-HGEEIVADVVLFATG-RAPNTKR 302 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~-~~v~~~-~g~~i~~D~vi~a~G-~~p~~~~ 302 (498)
+.+.+.+.+++.|++++++++++++..+ ++. +.+... ++..+.++.||+|+| +..|.++
T Consensus 125 l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~ 188 (432)
T TIGR02485 125 LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDW 188 (432)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHH
Confidence 4455666677889999999999998765 232 334443 345789999999999 4445543
No 469
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.78 E-value=0.032 Score=55.14 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=30.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC
Q 042564 203 RAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL 237 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l 237 (498)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 58999999999999999999999999999987653
No 470
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.75 E-value=0.049 Score=54.70 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=31.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
++|+|||||..|+++|..|++.|.+|+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976544
No 471
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.72 E-value=0.43 Score=50.84 Aligned_cols=52 Identities=21% Similarity=0.154 Sum_probs=35.0
Q ss_pred HHHHHHHHh-CCCEEEcCccEEEEEEeCCe-EEE---EECCCe--EEEcCEEEEecCCC
Q 042564 246 AVVARNLEG-RGINLHPRTTIKELIKSEEG-VKV---ITDHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 246 ~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~-~~v---~~~~g~--~i~~D~vi~a~G~~ 297 (498)
+.+.+.+.+ .||+++.++.+.++..+++. ..+ ...+|+ .+.++.||+|||-.
T Consensus 141 ~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 141 HTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 334444444 58999999888888765543 222 224564 57899999999965
No 472
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.52 E-value=0.45 Score=50.88 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEeC-Ce-EEEE---ECCCe--EEEcCEEEEecCCCc
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKSE-EG-VKVI---TDHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~-~~v~---~~~g~--~i~~D~vi~a~G~~p 298 (498)
+...+.+.+++.||++++++.+.++..++ +. ..+. ..+|+ .+.++.||+|||-..
T Consensus 151 i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 151 ILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 44455556667889999999999987654 32 3333 23564 578999999998543
No 473
>PRK06184 hypothetical protein; Provisional
Probab=94.50 E-value=0.066 Score=56.07 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=32.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL 237 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l 237 (498)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~ 39 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPF 39 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 369999999999999999999999999999987653
No 474
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=94.46 E-value=0.66 Score=50.15 Aligned_cols=46 Identities=28% Similarity=0.360 Sum_probs=33.5
Q ss_pred HHHHhCCCEEEcCccEEEEEEeCCe-EEEEE---CCCe--EEEcCEEEEecC
Q 042564 250 RNLEGRGINLHPRTTIKELIKSEEG-VKVIT---DHGE--EIVADVVLFATG 295 (498)
Q Consensus 250 ~~l~~~Gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~i~~D~vi~a~G 295 (498)
+.+.+.||+++.++.+.++..+++. ..+.. .+|+ .+.++.||+|||
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 4455678999999999998876554 23322 4565 467999999999
No 475
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.45 E-value=0.43 Score=51.16 Aligned_cols=54 Identities=20% Similarity=0.168 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCEEEcCccEEEEEE-eCCe-EEEE---ECCCe--EEEcCEEEEecCC
Q 042564 243 EMRAVVARNLEGRGINLHPRTTIKELIK-SEEG-VKVI---TDHGE--EIVADVVLFATGR 296 (498)
Q Consensus 243 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~-~~v~---~~~g~--~i~~D~vi~a~G~ 296 (498)
.+...+.+.+++.||+++.++.+.++.. +++. ..+. ..+|+ .+.++.||+|||-
T Consensus 167 ~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 167 AMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 4445555556667889999999998776 3333 3333 24564 5789999999974
No 476
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=94.44 E-value=0.49 Score=50.61 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=24.6
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 204 AVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 204 v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
|+|||+|..|+-.|..+++.|.+|.++++.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 5788888888888888888888888887654
No 477
>PRK05868 hypothetical protein; Validated
Probab=94.40 E-value=0.067 Score=53.61 Aligned_cols=35 Identities=23% Similarity=0.142 Sum_probs=32.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 47999999999999999999999999999998754
No 478
>PRK06847 hypothetical protein; Provisional
Probab=94.38 E-value=0.091 Score=52.66 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=32.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.++|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 468999999999999999999999999999987653
No 479
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.32 E-value=0.076 Score=53.68 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=33.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 468999999999999999999999999999998754
No 480
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=94.29 E-value=0.65 Score=49.49 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=35.0
Q ss_pred HHHHHHHHHHh-CCCEEEcCccEEEEEEeCCeE-EE---EECCCe--EEEcCEEEEecCC
Q 042564 244 MRAVVARNLEG-RGINLHPRTTIKELIKSEEGV-KV---ITDHGE--EIVADVVLFATGR 296 (498)
Q Consensus 244 ~~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~i~~D~vi~a~G~ 296 (498)
+...+.+.+.+ .+|+++.++.+.++..+++.+ .+ ...+|+ .+.++.||+|+|-
T Consensus 135 i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 135 MLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 33334444444 378888898898887655542 22 334664 6889999999984
No 481
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=94.25 E-value=0.12 Score=52.01 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCeEEEcCEEEEecCCCcC
Q 042564 241 DDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGEEIVADVVLFATGRAPN 299 (498)
Q Consensus 241 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 299 (498)
...+...+.+.+++ |++++.+++|.+++.+++.+.+++.+|+.+.+|.||+|+|....
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 46677888888888 99999999999998877778888888887999999999997643
No 482
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=94.20 E-value=0.73 Score=49.05 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=33.6
Q ss_pred HHHHHHHHh-CCCEEEcCccEEEEEEeCCeE-EE---EECCCe--EEEcCEEEEecCC
Q 042564 246 AVVARNLEG-RGINLHPRTTIKELIKSEEGV-KV---ITDHGE--EIVADVVLFATGR 296 (498)
Q Consensus 246 ~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~i~~D~vi~a~G~ 296 (498)
..+.+.+.+ .+|+++.++.+.++..+++.+ .+ ...+|+ .+.++.||+|+|-
T Consensus 136 ~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 136 HTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 334444444 478888888888887655542 22 234664 5789999999984
No 483
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.15 E-value=0.72 Score=49.23 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCccEEEEEEeC----Ce-EEEE---ECCCe--EEEcCEEEEecCCCc
Q 042564 242 DEMRAVVARNLEGRGINLHPRTTIKELIKSE----EG-VKVI---TDHGE--EIVADVVLFATGRAP 298 (498)
Q Consensus 242 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~----~~-~~v~---~~~g~--~i~~D~vi~a~G~~p 298 (498)
..+.+.+.+.+++.||+++.++.+.++..++ +. ..+. ..+++ .+.++.||+|||-..
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 4566677777888899999999999987654 32 3333 24554 578999999999654
No 484
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.14 E-value=0.053 Score=51.47 Aligned_cols=30 Identities=40% Similarity=0.374 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 24 FDLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 24 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
..|-|||||.||..||++++++|.+|.|.|
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~E 33 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYE 33 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEE
Confidence 469999999999999999999999999999
No 485
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=94.07 E-value=0.17 Score=49.26 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=29.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKE 234 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~ 234 (498)
-.|+|||+|..|.-+|..|.+-|.+|++++|.-
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 359999999999999999999999999999853
No 486
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=94.05 E-value=0.84 Score=49.11 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEe-CCe-EEEEE---CCCe--EEEcCEEEEecCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKS-EEG-VKVIT---DHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~-~~v~~---~~g~--~i~~D~vi~a~G~~ 297 (498)
+...+.+.+.+.||+++.++.+.++..+ ++. ..+.. .+|+ .+.++.||+|||--
T Consensus 189 i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 189 MLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 3444455555678899989888887655 333 33332 3564 57899999999853
No 487
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.02 E-value=0.064 Score=46.46 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=27.9
Q ss_pred cEEEECCChhHHHHHHHHHhCCCcEEEEc
Q 042564 25 DLFVIGAGSGGVRAARFSANFGAKVGICE 53 (498)
Q Consensus 25 dvvIIGgG~aGl~aA~~l~~~g~~V~lve 53 (498)
+|.|||||..|.+.|..|++.|.+|.|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~ 29 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWG 29 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEe
Confidence 48999999999999999999999999999
No 488
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.01 E-value=0.078 Score=53.46 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=42.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeC-CCCCCC-CCHHHHHHHHHHHHhCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRK-ELPLRG-FDDEMRAVVARNLEGRGI 257 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~-~~~l~~-~~~~~~~~l~~~l~~~Gv 257 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++. +.+.+. -.-.+...-.+.|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 47999999999999999999999999999997 232222 122244445566777777
No 489
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.98 E-value=0.74 Score=49.13 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCEEEcCccEEEEEEe-CCe-EEEE---ECCCe--EEEcCEEEEecCCC
Q 042564 244 MRAVVARNLEGRGINLHPRTTIKELIKS-EEG-VKVI---TDHGE--EIVADVVLFATGRA 297 (498)
Q Consensus 244 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~-~~v~---~~~g~--~i~~D~vi~a~G~~ 297 (498)
+...+.+.+.+.||+++.++.+.++..+ ++. ..+. ..+|+ .+.++.||+|||--
T Consensus 145 i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 145 LLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 3334444455678888888888888764 333 3333 23554 57799999999853
No 490
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.91 E-value=0.15 Score=46.23 Aligned_cols=70 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEEC
Q 042564 201 PKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITD 280 (498)
Q Consensus 201 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~ 280 (498)
.++++|||||.+|..-+..|.+.|.+|+++.+... ..+.+..++..++++....-...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~----------~~l~~l~~~~~i~~~~~~~~~~d------------ 66 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE----------SELTLLAEQGGITWLARCFDADI------------ 66 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC----------HHHHHHHHcCCEEEEeCCCCHHH------------
Q ss_pred CCeEEEcCEEEEecC
Q 042564 281 HGEEIVADVVLFATG 295 (498)
Q Consensus 281 ~g~~i~~D~vi~a~G 295 (498)
.-.+++||.|||
T Consensus 67 ---l~~~~lVi~at~ 78 (205)
T TIGR01470 67 ---LEGAFLVIAATD 78 (205)
T ss_pred ---hCCcEEEEECCC
No 491
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=93.87 E-value=0.34 Score=48.95 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=33.8
Q ss_pred HHHHHHh-CCCEEEcCccEEEEEEeCC-eE-EEEEC--CC--eEEEcCEEEEecCC
Q 042564 248 VARNLEG-RGINLHPRTTIKELIKSEE-GV-KVITD--HG--EEIVADVVLFATGR 296 (498)
Q Consensus 248 l~~~l~~-~Gv~i~~~~~v~~i~~~~~-~~-~v~~~--~g--~~i~~D~vi~a~G~ 296 (498)
|.+..++ .+|+++.+..+.++..+++ .+ .+.+. ++ ..+.++.||+|||-
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 4444444 5899999988888877766 33 44432 22 36789999999983
No 492
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.85 E-value=0.94 Score=43.63 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCCe--EEEcCEEEEecCCCcCCCCCCcccCCceeCCCCCeEcC
Q 042564 247 VVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHGE--EIVADVVLFATGRAPNTKRLNLKAVGVEVDQTGAVKVD 321 (498)
Q Consensus 247 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~l~l~~~gi~~~~~g~i~vd 321 (498)
.+++.|.+.+|+++.+.. ++. ++..+.|...+|+ .+.+..+++|+|-+|..+.+ ....+.++.+|+....
T Consensus 115 IY~~~L~k~~V~~i~G~a--~f~-~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnI--pG~E~gidSDgff~Le 186 (478)
T KOG0405|consen 115 IYKRNLAKAAVKLIEGRA--RFV-SPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNI--PGAELGIDSDGFFDLE 186 (478)
T ss_pred HHHhhccccceeEEeeeE--EEc-CCCceEEEecCCeeEEEecceEEEEeCCccCCCCC--Cchhhccccccccchh
Confidence 355666677777776621 121 3345677777885 37899999999999988753 3333444555555443
No 493
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.75 E-value=0.2 Score=42.95 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=0.0
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCCCCCCHHHHHHHHHHHHhCCCEEEcCccEEEEEEeCCeEEEEECCC-
Q 042564 204 AVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKVITDHG- 282 (498)
Q Consensus 204 v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g- 282 (498)
|+|+|+|.+|.-+|..|.+.|.+|+++.| .+ ..+.+++.|+.+.... ....-.........
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r------------~~-~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~ 62 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSR------------SP-RLEAIKEQGLTITGPD-----GDETVQPPIVISAPS 62 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEES------------HH-HHHHHHHHCEEEEETT-----EEEEEEEEEEESSHG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEc------------cc-cHHhhhheeEEEEecc-----cceecccccccCcch
Q ss_pred -eEEEcCEEEEec
Q 042564 283 -EEIVADVVLFAT 294 (498)
Q Consensus 283 -~~i~~D~vi~a~ 294 (498)
..-++|.||+|+
T Consensus 63 ~~~~~~D~viv~v 75 (151)
T PF02558_consen 63 ADAGPYDLVIVAV 75 (151)
T ss_dssp HHHSTESEEEE-S
T ss_pred hccCCCcEEEEEe
No 494
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.70 E-value=0.16 Score=51.14 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=32.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 47999999999999999999999999999997643
No 495
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=93.66 E-value=0.22 Score=49.08 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=57.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC-CcEEEEeeCCCCC-------C----------C----CCH------------------
Q 042564 203 RAVVLGGGYIAVEFASIWRGMG-STVDLLFRKELPL-------R----------G----FDD------------------ 242 (498)
Q Consensus 203 ~v~ViG~G~~g~e~a~~l~~~g-~~V~lv~~~~~~l-------~----------~----~~~------------------ 242 (498)
.++.||.|+..+-+|..+.+.+ .++..+++.+.+- + . .+|
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 5789999999999999998876 7888888766420 0 0 000
Q ss_pred ------------HHHHHHHHHHHhCCCEEEcCccEEEEEEeCCe----EEEEEC----CCeEEEcCEEEEecCCCcCCCC
Q 042564 243 ------------EMRAVVARNLEGRGINLHPRTTIKELIKSEEG----VKVITD----HGEEIVADVVLFATGRAPNTKR 302 (498)
Q Consensus 243 ------------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~----~~v~~~----~g~~i~~D~vi~a~G~~p~~~~ 302 (498)
+..+.++-..++..-.++.+.+|++|....+. ..|.+. +++++.|..|++++|..|..+.
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP~ 163 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIPE 163 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---G
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCCc
Confidence 01111222223335448889999999876542 667762 3468999999999999987754
No 496
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.64 E-value=0.072 Score=48.93 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=57.6
Q ss_pred EEEEcCCHHHHHHHHHHHHC--CCcEEEEeeCCCCCCC-CCHHHHHHHHHH------HHhCCCEEE--cCccEEEEEEeC
Q 042564 204 AVVLGGGYIAVEFASIWRGM--GSTVDLLFRKELPLRG-FDDEMRAVVARN------LEGRGINLH--PRTTIKELIKSE 272 (498)
Q Consensus 204 v~ViG~G~~g~e~a~~l~~~--g~~V~lv~~~~~~l~~-~~~~~~~~l~~~------l~~~Gv~i~--~~~~v~~i~~~~ 272 (498)
.+|||||..|+.+|+.|+.+ ..+|.++..++-+-+- -...+.+.+++. ..+.|-.+. .+. |..+. .
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~~~--s 78 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVTWD--S 78 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhhhc--c
Confidence 57999999999999999876 4477777765532110 122233333221 001111111 111 33332 2
Q ss_pred CeEEEEECCCeEEEcCEEEEecCCCcCCC
Q 042564 273 EGVKVITDHGEEIVADVVLFATGRAPNTK 301 (498)
Q Consensus 273 ~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 301 (498)
....+.+.+|..+.++.+.+|+|.+|-..
T Consensus 79 ~ehci~t~~g~~~ky~kKOG~tg~kPklq 107 (334)
T KOG2755|consen 79 SEHCIHTQNGEKLKYFKLCLCTGYKPKLQ 107 (334)
T ss_pred ccceEEecCCceeeEEEEEEecCCCccee
Confidence 23457888999999999999999999875
No 497
>PRK09126 hypothetical protein; Provisional
Probab=93.43 E-value=0.21 Score=50.43 Aligned_cols=56 Identities=29% Similarity=0.407 Sum_probs=41.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCCC---CCCC-H--HHHHHHHHHHHhCCC
Q 042564 202 KRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPL---RGFD-D--EMRAVVARNLEGRGI 257 (498)
Q Consensus 202 ~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~l---~~~~-~--~~~~~l~~~l~~~Gv 257 (498)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+- +... . .+.....+.|++.|+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl 65 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGA 65 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCC
Confidence 369999999999999999999999999999987531 1111 1 234445666777776
No 498
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.42 E-value=0.11 Score=53.71 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCcEEEEeeCCCC
Q 042564 200 LPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELP 236 (498)
Q Consensus 200 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~lv~~~~~~ 236 (498)
..++|+|||+|.+|+-+|..|.+.|.+|++++..+++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 3569999999999999999999999999999988864
No 499
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.38 E-value=1.4 Score=47.09 Aligned_cols=54 Identities=28% Similarity=0.398 Sum_probs=35.3
Q ss_pred HHHHHhCCCEEEcCccEEEEEEeCCe--EEEEE-CCCe--EEEcC-EEEEecC-CCcCCCC
Q 042564 249 ARNLEGRGINLHPRTTIKELIKSEEG--VKVIT-DHGE--EIVAD-VVLFATG-RAPNTKR 302 (498)
Q Consensus 249 ~~~l~~~Gv~i~~~~~v~~i~~~~~~--~~v~~-~~g~--~i~~D-~vi~a~G-~~p~~~~ 302 (498)
.+.+++.|+++++++.++++..++++ +.|.. .+++ .+.+. .||+|+| +.-|.++
T Consensus 220 ~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em 280 (584)
T PRK12835 220 RLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDW 280 (584)
T ss_pred HHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHH
Confidence 34455678999999999999875432 33333 2343 46787 5999997 4555554
No 500
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.37 E-value=0.072 Score=42.43 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=29.1
Q ss_pred CccEEEECCChhHHHHHHHHHhCCCcEEEEcc
Q 042564 23 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 54 (498)
Q Consensus 23 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lvek 54 (498)
...|+|||||..|..-+..|.+.|.+|+|+.+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~ 38 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISP 38 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 46899999999999999999999999999993
Done!