Query 042567
Match_columns 451
No_of_seqs 236 out of 1563
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:23:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 1.9E-85 4E-90 720.1 45.2 425 3-434 302-759 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 2.8E-67 6.1E-72 568.7 37.0 419 3-429 289-724 (769)
3 PRK11175 universal stress prot 99.9 1.7E-22 3.7E-27 199.8 19.9 264 167-448 5-293 (305)
4 PRK03659 glutathione-regulated 99.8 2.3E-18 5.1E-23 184.9 13.4 133 3-140 246-378 (601)
5 PRK03562 glutathione-regulated 99.8 2.6E-18 5.6E-23 185.0 13.3 133 3-140 249-381 (621)
6 PRK10669 putative cation:proto 99.8 2E-18 4.4E-23 184.5 12.5 133 3-139 257-389 (558)
7 COG0475 KefB Kef-type K+ trans 99.7 4.3E-16 9.3E-21 159.3 10.9 135 3-141 252-387 (397)
8 cd01988 Na_H_Antiporter_C The 99.6 8.7E-15 1.9E-19 125.9 13.1 131 167-312 1-131 (132)
9 PRK15456 universal stress prot 99.5 7E-13 1.5E-17 116.2 12.6 134 167-312 4-141 (142)
10 PRK15005 universal stress prot 99.5 9.5E-13 2.1E-17 115.3 12.8 137 167-312 4-143 (144)
11 PF00999 Na_H_Exchanger: Sodiu 99.4 1.7E-14 3.8E-19 147.1 1.3 136 2-138 242-378 (380)
12 PRK15118 universal stress glob 99.4 1.6E-12 3.4E-17 114.1 11.4 134 167-313 5-138 (144)
13 PRK09982 universal stress prot 99.4 2.6E-12 5.6E-17 112.8 11.4 133 167-312 5-137 (142)
14 cd01989 STK_N The N-terminal d 99.4 6.2E-12 1.4E-16 110.5 13.1 139 167-313 1-144 (146)
15 cd01987 USP_OKCHK USP domain i 99.3 8.4E-12 1.8E-16 106.5 11.1 122 167-312 1-123 (124)
16 PF00582 Usp: Universal stress 99.3 8.2E-12 1.8E-16 107.0 7.1 133 167-312 4-139 (140)
17 PRK10116 universal stress prot 99.2 1E-10 2.3E-15 102.1 11.6 134 167-314 5-139 (142)
18 PRK11175 universal stress prot 99.1 3.5E-10 7.7E-15 111.8 11.4 142 166-317 153-303 (305)
19 cd00293 USP_Like Usp: Universa 99.1 7.4E-10 1.6E-14 93.8 11.3 129 167-311 1-129 (130)
20 PRK05326 potassium/proton anti 99.1 1.1E-10 2.5E-15 125.0 5.9 136 3-140 253-389 (562)
21 cd01987 USP_OKCHK USP domain i 99.1 7.1E-10 1.5E-14 94.5 8.9 115 328-448 1-117 (124)
22 cd01989 STK_N The N-terminal d 99.0 2.2E-09 4.8E-14 94.2 10.6 118 328-447 1-135 (146)
23 COG4651 RosB Kef-type K+ trans 99.0 2.4E-09 5.1E-14 101.8 10.6 132 4-140 258-389 (408)
24 PRK15005 universal stress prot 99.0 3.9E-09 8.5E-14 92.3 10.2 119 327-447 3-137 (144)
25 PRK09982 universal stress prot 98.9 2.5E-09 5.3E-14 93.8 8.1 115 327-448 4-132 (142)
26 PF00582 Usp: Universal stress 98.9 8.3E-09 1.8E-13 88.2 9.9 119 327-448 3-134 (140)
27 cd01988 Na_H_Antiporter_C The 98.9 2.4E-08 5.2E-13 85.5 12.0 118 328-447 1-125 (132)
28 PRK15456 universal stress prot 98.9 2.1E-08 4.5E-13 87.8 11.6 118 327-448 3-136 (142)
29 PRK15118 universal stress glob 98.8 1.9E-08 4E-13 88.2 8.8 116 327-448 4-132 (144)
30 COG0589 UspA Universal stress 98.7 4.9E-07 1.1E-11 79.1 13.4 138 166-313 6-151 (154)
31 PRK10116 universal stress prot 98.7 1.2E-07 2.7E-12 82.6 9.2 116 327-448 4-132 (142)
32 cd00293 USP_Like Usp: Universa 98.6 4.4E-07 9.6E-12 76.5 11.5 118 328-447 1-124 (130)
33 PRK14853 nhaA pH-dependent sod 98.3 1.3E-05 2.7E-10 81.8 13.2 135 3-138 236-395 (423)
34 PRK12652 putative monovalent c 98.2 6.3E-06 1.4E-10 82.9 10.2 108 167-283 7-123 (357)
35 COG0589 UspA Universal stress 98.2 2.3E-05 5E-10 68.4 11.5 120 327-448 6-145 (154)
36 TIGR00773 NhaA Na+/H+ antiport 98.1 2.5E-05 5.3E-10 78.3 12.3 104 3-107 226-344 (373)
37 PRK12652 putative monovalent c 97.5 0.00044 9.5E-09 69.7 9.5 100 327-427 6-123 (357)
38 PRK10490 sensor protein KdpD; 97.4 0.00064 1.4E-08 77.1 9.6 115 327-448 251-366 (895)
39 PRK10490 sensor protein KdpD; 97.3 0.0014 3E-08 74.4 11.5 124 164-313 249-373 (895)
40 COG2205 KdpD Osmosensitive K+ 97.0 0.0025 5.3E-08 69.1 9.2 113 327-447 249-365 (890)
41 PRK12460 2-keto-3-deoxyglucona 96.3 0.029 6.3E-07 55.0 9.9 118 17-140 186-306 (312)
42 PRK09560 nhaA pH-dependent sod 95.9 0.071 1.5E-06 53.9 11.0 102 4-106 234-352 (389)
43 PRK14856 nhaA pH-dependent sod 95.8 0.078 1.7E-06 54.4 10.7 118 15-135 297-428 (438)
44 COG2205 KdpD Osmosensitive K+ 95.8 0.065 1.4E-06 58.5 10.5 126 163-312 246-372 (890)
45 cd01984 AANH_like Adenine nucl 95.6 0.028 6E-07 44.3 5.5 78 329-447 1-80 (86)
46 TIGR00844 c_cpa1 na(+)/h(+) an 95.5 0.047 1E-06 60.1 8.3 89 21-110 292-386 (810)
47 PRK14854 nhaA pH-dependent sod 95.1 0.22 4.7E-06 50.3 11.0 100 4-107 231-348 (383)
48 cd01984 AANH_like Adenine nucl 95.0 0.07 1.5E-06 42.0 6.0 49 260-310 35-84 (86)
49 PRK09561 nhaA pH-dependent sod 94.7 0.33 7.1E-06 49.2 11.2 100 4-107 234-351 (388)
50 TIGR03136 malonate_biotin Na+- 93.5 0.2 4.3E-06 49.9 6.7 113 24-143 102-216 (399)
51 PRK14855 nhaA pH-dependent sod 93.5 1.2 2.6E-05 45.8 12.5 88 15-107 285-383 (423)
52 TIGR00932 2a37 transporter, mo 92.6 2.6 5.7E-05 40.8 13.3 94 21-119 43-137 (273)
53 PF03977 OAD_beta: Na+-transpo 92.6 0.17 3.7E-06 49.8 4.7 114 24-143 66-179 (360)
54 TIGR00840 b_cpa1 sodium/hydrog 92.5 0.23 4.9E-06 53.5 6.1 80 23-105 293-378 (559)
55 PRK03562 glutathione-regulated 92.2 1.9 4.1E-05 47.1 12.8 89 19-112 54-142 (621)
56 PRK15475 oxaloacetate decarbox 92.1 0.19 4.1E-06 50.0 4.4 113 24-143 131-250 (433)
57 PRK15476 oxaloacetate decarbox 92.0 0.2 4.3E-06 49.9 4.4 112 24-142 131-249 (433)
58 PRK15477 oxaloacetate decarbox 92.0 0.2 4.3E-06 49.9 4.4 112 24-142 131-249 (433)
59 COG3004 NhaA Na+/H+ antiporter 91.8 1.9 4.2E-05 42.5 10.8 101 4-108 237-355 (390)
60 TIGR00930 2a30 K-Cl cotranspor 91.3 33 0.00071 39.6 28.8 98 165-283 575-677 (953)
61 COG0025 NhaP NhaP-type Na+/H+ 91.2 1.6 3.4E-05 45.5 10.5 117 21-139 279-407 (429)
62 PF06965 Na_H_antiport_1: Na+/ 90.7 0.029 6.3E-07 56.5 -2.8 104 4-108 230-352 (378)
63 COG1883 OadB Na+-transporting 90.7 0.087 1.9E-06 50.6 0.5 113 24-143 81-194 (375)
64 TIGR00793 kdgT 2-keto-3-deoxyg 90.3 2.1 4.5E-05 41.9 9.5 121 15-140 189-312 (314)
65 PRK05326 potassium/proton anti 89.7 2.1 4.6E-05 46.2 10.2 90 21-115 59-150 (562)
66 PRK10669 putative cation:proto 89.6 4.8 0.0001 43.4 12.8 90 21-115 57-146 (558)
67 COG1646 Predicted phosphate-bi 89.2 20 0.00044 33.8 15.5 63 249-315 16-79 (240)
68 TIGR02432 lysidine_TilS_N tRNA 88.9 4.1 8.9E-05 36.9 10.1 38 328-365 1-38 (189)
69 PF03812 KdgT: 2-keto-3-deoxyg 88.6 1.8 3.9E-05 42.5 7.7 120 15-140 189-312 (314)
70 PRK03659 glutathione-regulated 88.5 6.5 0.00014 42.8 13.0 89 20-113 55-143 (601)
71 PF03616 Glt_symporter: Sodium 87.0 7.1 0.00015 39.8 11.4 116 26-142 66-187 (368)
72 PRK05274 2-keto-3-deoxyglucona 86.7 2.2 4.8E-05 42.6 7.3 114 24-141 199-315 (326)
73 TIGR01109 Na_pump_decarbB sodi 86.4 0.63 1.4E-05 45.7 3.2 112 24-142 60-178 (354)
74 PF03601 Cons_hypoth698: Conse 85.6 4.7 0.0001 39.9 9.0 123 15-140 48-172 (305)
75 cd01992 PP-ATPase N-terminal d 85.3 4.3 9.4E-05 36.5 8.1 38 328-365 1-38 (185)
76 TIGR00831 a_cpa1 Na+/H+ antipo 85.3 2.3 5.1E-05 45.5 7.2 79 24-103 266-363 (525)
77 COG3493 CitS Na+/citrate sympo 84.3 5.1 0.00011 40.4 8.4 91 26-118 326-419 (438)
78 PF05684 DUF819: Protein of un 84.2 4.5 9.7E-05 41.4 8.4 100 12-117 257-356 (378)
79 PRK05253 sulfate adenylyltrans 84.2 4 8.8E-05 40.3 7.8 42 327-368 28-69 (301)
80 PRK03359 putative electron tra 84.1 5.2 0.00011 38.6 8.3 93 332-436 31-131 (256)
81 COG2855 Predicted membrane pro 83.8 1.9 4.1E-05 42.9 5.2 86 16-104 59-144 (334)
82 KOG1288 Amino acid transporter 83.1 56 0.0012 35.9 15.9 97 166-283 561-662 (945)
83 COG1346 LrgB Putative effector 81.9 20 0.00044 33.7 10.9 108 17-137 64-171 (230)
84 TIGR03082 Gneg_AbrB_dup membra 81.5 13 0.00028 32.9 9.3 67 35-104 58-125 (156)
85 PF05145 AmoA: Putative ammoni 81.5 9.9 0.00021 37.9 9.5 99 35-139 215-315 (318)
86 COG0037 MesJ tRNA(Ile)-lysidin 81.4 10 0.00023 36.9 9.6 37 327-365 22-58 (298)
87 COG0475 KefB Kef-type K+ trans 80.5 20 0.00042 37.0 11.5 105 27-135 63-169 (397)
88 PLN03159 cation/H(+) antiporte 80.5 18 0.00039 41.0 12.2 120 327-447 459-607 (832)
89 TIGR00844 c_cpa1 na(+)/h(+) an 80.4 10 0.00022 42.3 9.7 71 25-97 74-146 (810)
90 TIGR00210 gltS sodium--glutama 80.3 15 0.00032 37.9 10.4 114 27-140 67-185 (398)
91 TIGR02039 CysD sulfate adenyly 79.8 5.9 0.00013 39.0 7.1 41 328-368 21-61 (294)
92 PF01171 ATP_bind_3: PP-loop f 79.6 5.1 0.00011 36.3 6.2 38 328-365 1-38 (182)
93 TIGR00831 a_cpa1 Na+/H+ antipo 79.5 14 0.0003 39.6 10.4 72 26-99 52-124 (525)
94 PRK12342 hypothetical protein; 79.3 10 0.00022 36.6 8.3 92 332-436 30-128 (254)
95 COG0786 GltS Na+/glutamate sym 78.9 10 0.00023 38.5 8.5 121 21-141 63-187 (404)
96 PF03390 2HCT: 2-hydroxycarbox 77.5 7.9 0.00017 39.8 7.4 98 19-117 299-399 (414)
97 TIGR00783 ccs citrate carrier 76.4 7.5 0.00016 39.1 6.8 99 16-115 226-330 (347)
98 KOG2310 DNA repair exonuclease 76.2 5.1 0.00011 42.2 5.5 74 262-335 41-125 (646)
99 PF03547 Mem_trans: Membrane t 76.1 5.9 0.00013 40.3 6.2 124 8-139 20-146 (385)
100 PRK04288 antiholin-like protei 75.4 58 0.0013 30.9 12.0 107 18-137 68-174 (232)
101 PRK12563 sulfate adenylyltrans 74.8 5.9 0.00013 39.3 5.5 44 327-370 38-81 (312)
102 COG3969 Predicted phosphoadeno 73.5 3.5 7.7E-05 40.9 3.5 42 327-368 28-70 (407)
103 cd01993 Alpha_ANH_like_II This 73.1 11 0.00023 33.8 6.5 38 328-365 1-40 (185)
104 COG0025 NhaP NhaP-type Na+/H+ 72.1 33 0.00072 35.7 10.6 73 27-101 64-138 (429)
105 TIGR00698 conserved hypothetic 72.1 37 0.0008 34.1 10.5 81 25-107 63-144 (335)
106 COG2086 FixA Electron transfer 70.4 33 0.00071 33.2 9.3 92 332-436 32-130 (260)
107 PF03652 UPF0081: Uncharacteri 69.7 21 0.00045 30.8 7.2 58 259-317 37-97 (135)
108 PF03956 DUF340: Membrane prot 68.7 15 0.00032 33.8 6.3 67 27-93 29-96 (191)
109 PRK10711 hypothetical protein; 68.3 67 0.0015 30.5 10.7 83 51-137 87-169 (231)
110 PRK06806 fructose-bisphosphate 67.7 1.3E+02 0.0028 29.5 14.6 115 245-362 16-138 (281)
111 TIGR00840 b_cpa1 sodium/hydrog 67.4 30 0.00066 37.3 9.4 75 26-102 69-152 (559)
112 PF01012 ETF: Electron transfe 67.0 18 0.0004 31.9 6.5 28 336-363 14-41 (164)
113 PF04172 LrgB: LrgB-like famil 65.6 81 0.0018 29.6 10.6 82 51-136 76-157 (215)
114 PF01884 PcrB: PcrB family; I 65.3 1.3E+02 0.0027 28.6 15.7 91 251-350 10-108 (230)
115 COG3263 NhaP-type Na+/H+ and K 64.2 14 0.0003 38.3 5.5 118 16-136 265-383 (574)
116 PRK10660 tilS tRNA(Ile)-lysidi 61.8 36 0.00079 35.5 8.5 58 327-389 16-74 (436)
117 PRK00109 Holliday junction res 60.5 23 0.0005 30.7 5.7 56 261-317 42-99 (138)
118 PF02601 Exonuc_VII_L: Exonucl 60.4 15 0.00034 36.4 5.3 65 378-443 28-104 (319)
119 PF07905 PucR: Purine cataboli 60.0 71 0.0015 26.8 8.6 91 188-282 15-108 (123)
120 TIGR00659 conserved hypothetic 59.3 1.3E+02 0.0028 28.5 10.8 83 51-137 86-168 (226)
121 TIGR00946 2a69 he Auxin Efflux 57.3 2E+02 0.0044 28.3 13.3 113 15-137 203-319 (321)
122 PF00999 Na_H_Exchanger: Sodiu 52.7 2.1 4.6E-05 43.4 -2.4 97 19-120 46-146 (380)
123 KOG0573 Asparagine synthase [A 52.6 1.2E+02 0.0026 31.6 9.9 100 293-403 224-328 (520)
124 cd01713 PAPS_reductase This do 52.6 25 0.00055 30.5 4.9 37 328-365 1-37 (173)
125 COG0816 Predicted endonuclease 52.1 37 0.00081 29.6 5.5 55 261-316 41-97 (141)
126 cd01986 Alpha_ANH_like Adenine 50.8 92 0.002 25.0 7.5 33 329-365 1-33 (103)
127 COG1570 XseA Exonuclease VII, 50.4 27 0.0006 36.2 5.1 60 374-433 145-209 (440)
128 COG0679 Predicted permeases [G 49.6 63 0.0014 32.0 7.6 108 11-126 26-135 (311)
129 COG3180 AbrB Putative ammonia 47.0 1.5E+02 0.0032 30.0 9.5 100 35-140 248-349 (352)
130 PRK12857 fructose-1,6-bisphosp 46.9 88 0.0019 30.7 7.9 69 246-318 17-86 (284)
131 COG1346 LrgB Putative effector 46.7 1.2E+02 0.0026 28.6 8.3 79 56-138 151-229 (230)
132 PRK12737 gatY tagatose-bisphos 45.9 91 0.002 30.6 7.8 70 245-318 16-86 (284)
133 PF01507 PAPS_reduct: Phosphoa 45.5 42 0.0009 29.4 5.1 35 328-366 1-35 (174)
134 KOG2722 Predicted membrane pro 45.5 22 0.00048 35.9 3.5 66 15-83 40-106 (408)
135 PF05684 DUF819: Protein of un 45.3 2.7E+02 0.0058 28.5 11.4 100 21-125 52-155 (378)
136 TIGR02432 lysidine_TilS_N tRNA 45.0 1.6E+02 0.0034 26.3 9.0 94 167-283 1-109 (189)
137 PF05145 AmoA: Putative ammoni 45.0 2E+02 0.0043 28.7 10.2 105 30-140 31-137 (318)
138 PF01171 ATP_bind_3: PP-loop f 44.6 2.3E+02 0.005 25.3 10.5 98 167-286 1-109 (182)
139 PRK12738 kbaY tagatose-bisphos 42.0 1.1E+02 0.0025 29.9 7.8 69 246-318 17-86 (286)
140 cd01997 GMP_synthase_C The C-t 41.8 1.8E+02 0.0039 28.6 9.3 35 328-365 1-35 (295)
141 COG3180 AbrB Putative ammonia 41.7 2.2E+02 0.0048 28.8 9.8 98 36-139 70-169 (352)
142 COG3263 NhaP-type Na+/H+ and K 40.8 69 0.0015 33.4 6.1 73 23-96 61-133 (574)
143 PRK00286 xseA exodeoxyribonucl 40.8 40 0.00087 35.1 4.8 58 375-433 146-208 (438)
144 COG0679 Predicted permeases [G 40.6 3.7E+02 0.008 26.5 13.1 116 16-138 190-307 (311)
145 TIGR01858 tag_bisphos_ald clas 40.4 1.3E+02 0.0027 29.6 7.9 69 246-318 15-84 (282)
146 PRK08185 hypothetical protein; 40.4 1.2E+02 0.0027 29.7 7.8 109 245-357 11-125 (283)
147 cd01995 ExsB ExsB is a transcr 40.2 81 0.0017 27.8 6.1 33 328-364 1-33 (169)
148 TIGR00841 bass bile acid trans 39.6 2.5E+02 0.0054 27.3 9.9 104 30-139 14-121 (286)
149 COG0385 Predicted Na+-dependen 39.3 3.2E+02 0.0069 27.3 10.4 77 27-105 41-121 (319)
150 COG1609 PurR Transcriptional r 39.2 3.1E+02 0.0067 27.2 10.8 74 228-316 72-146 (333)
151 TIGR01520 FruBisAldo_II_A fruc 38.8 1.6E+02 0.0034 29.9 8.3 85 230-319 13-112 (357)
152 PF14362 DUF4407: Domain of un 38.4 3.2E+02 0.0069 26.7 10.6 82 53-141 17-109 (301)
153 cd01994 Alpha_ANH_like_IV This 38.1 1.1E+02 0.0024 28.1 6.7 34 328-365 1-34 (194)
154 PRK08706 lipid A biosynthesis 37.7 70 0.0015 31.2 5.7 57 300-364 171-227 (289)
155 TIGR01625 YidE_YbjL_dupl AspT/ 36.7 95 0.0021 27.5 5.8 72 12-83 42-116 (154)
156 TIGR00237 xseA exodeoxyribonuc 35.7 60 0.0013 33.9 5.1 57 376-433 141-203 (432)
157 PF02673 BacA: Bacitracin resi 35.6 1.6E+02 0.0035 28.4 7.7 54 53-106 151-204 (259)
158 PRK09195 gatY tagatose-bisphos 35.5 1.6E+02 0.0035 28.9 7.7 69 246-318 17-86 (284)
159 cd01985 ETF The electron trans 35.3 3.2E+02 0.007 24.3 9.4 27 336-363 18-44 (181)
160 COG0175 CysH 3'-phosphoadenosi 34.8 1.3E+02 0.0027 29.1 6.9 37 328-368 41-77 (261)
161 TIGR00250 RNAse_H_YqgF RNAse H 34.1 1.4E+02 0.0031 25.4 6.4 57 259-316 34-92 (130)
162 cd00947 TBP_aldolase_IIB Tagat 34.0 1.7E+02 0.0037 28.5 7.6 107 246-357 12-126 (276)
163 TIGR01521 FruBisAldo_II_B fruc 32.8 1.9E+02 0.0042 29.2 7.9 69 246-318 15-85 (347)
164 PRK09197 fructose-bisphosphate 32.6 2.2E+02 0.0048 28.8 8.2 71 246-318 20-104 (350)
165 PF04172 LrgB: LrgB-like famil 32.5 2E+02 0.0044 26.9 7.6 76 57-136 139-214 (215)
166 PF01758 SBF: Sodium Bile acid 32.2 3.8E+02 0.0081 24.1 11.0 57 32-90 6-64 (187)
167 COG1560 HtrB Lauroyl/myristoyl 31.9 42 0.0009 33.4 3.0 47 309-363 197-243 (308)
168 PRK06801 hypothetical protein; 31.9 2E+02 0.0044 28.2 7.8 108 246-357 17-131 (286)
169 PF02844 GARS_N: Phosphoribosy 31.2 40 0.00087 27.6 2.3 25 259-283 48-72 (100)
170 PF03686 UPF0146: Uncharacteri 30.7 76 0.0016 27.1 4.0 33 251-283 73-105 (127)
171 TIGR02208 lipid_A_msbB lipid A 30.4 1.1E+02 0.0023 30.2 5.7 50 306-363 192-241 (305)
172 PRK05835 fructose-bisphosphate 30.4 2.2E+02 0.0048 28.3 7.8 69 246-318 16-86 (307)
173 TIGR00946 2a69 he Auxin Efflux 30.1 61 0.0013 32.1 4.0 94 11-106 28-124 (321)
174 TIGR00884 guaA_Cterm GMP synth 29.4 2.3E+02 0.005 28.1 7.9 36 327-365 17-52 (311)
175 PRK09196 fructose-1,6-bisphosp 29.2 2.2E+02 0.0047 28.9 7.6 71 245-318 16-87 (347)
176 PRK13399 fructose-1,6-bisphosp 29.0 2.5E+02 0.0053 28.5 7.9 70 245-318 16-87 (347)
177 PRK09546 zntB zinc transporter 28.6 78 0.0017 31.5 4.4 26 22-47 267-295 (324)
178 TIGR02207 lipid_A_htrB lipid A 28.3 1E+02 0.0022 30.3 5.1 52 305-363 187-238 (303)
179 PLN02285 methionyl-tRNA formyl 28.1 1.3E+02 0.0028 30.2 5.8 44 406-450 83-127 (334)
180 PRK07998 gatY putative fructos 27.8 2.3E+02 0.005 27.8 7.4 106 246-357 17-131 (283)
181 PRK14561 hypothetical protein; 27.8 2.9E+02 0.0063 25.2 7.8 33 328-365 2-34 (194)
182 PRK10711 hypothetical protein; 27.8 4.5E+02 0.0097 25.0 9.0 59 75-136 167-225 (231)
183 PRK00281 undecaprenyl pyrophos 27.5 3E+02 0.0066 26.7 8.1 53 53-105 155-207 (268)
184 cd00946 FBP_aldolase_IIA Class 27.5 2.6E+02 0.0055 28.3 7.7 71 246-318 15-99 (345)
185 TIGR00268 conserved hypothetic 27.4 1.1E+02 0.0024 29.1 5.1 35 327-365 13-47 (252)
186 cd06281 PBP1_LacI_like_5 Ligan 27.4 5E+02 0.011 24.0 10.1 74 227-316 12-88 (269)
187 PRK10696 tRNA 2-thiocytidine b 27.1 1.5E+02 0.0032 28.4 5.9 38 327-364 30-69 (258)
188 PRK13523 NADPH dehydrogenase N 26.8 5.8E+02 0.013 25.6 10.3 122 285-427 186-308 (337)
189 cd01712 ThiI ThiI is required 26.7 1.1E+02 0.0023 27.3 4.6 35 328-366 1-35 (177)
190 PTZ00370 STEVOR; Provisional 26.6 2E+02 0.0043 28.2 6.5 44 98-143 241-284 (296)
191 COG1963 Uncharacterized protei 26.6 4.4E+02 0.0095 23.1 7.9 73 42-125 3-84 (153)
192 PRK04169 geranylgeranylglycery 26.4 4.2E+02 0.009 25.2 8.6 61 250-315 9-69 (232)
193 PF03547 Mem_trans: Membrane t 26.3 6.7E+02 0.014 25.1 11.4 103 15-121 269-371 (385)
194 cd01992 PP-ATPase N-terminal d 26.2 4.5E+02 0.0098 23.1 9.2 95 167-283 1-106 (185)
195 PRK04148 hypothetical protein; 26.1 84 0.0018 27.1 3.5 32 252-283 81-112 (134)
196 TIGR00659 conserved hypothetic 26.0 5.3E+02 0.012 24.4 9.2 52 80-134 169-222 (226)
197 PF02441 Flavoprotein: Flavopr 26.0 1E+02 0.0022 26.0 4.2 34 327-361 1-34 (129)
198 PRK08025 lipid A biosynthesis 25.8 1.3E+02 0.0027 29.6 5.3 51 306-363 192-242 (305)
199 PRK04288 antiholin-like protei 25.7 5.2E+02 0.011 24.6 9.0 18 118-135 212-229 (232)
200 TIGR00167 cbbA ketose-bisphosp 25.5 3.2E+02 0.0069 26.9 7.9 69 246-318 17-89 (288)
201 PRK06860 lipid A biosynthesis 25.2 1.4E+02 0.003 29.5 5.4 52 305-363 193-244 (309)
202 PRK08943 lipid A biosynthesis 24.9 1.4E+02 0.003 29.5 5.4 51 305-363 200-250 (314)
203 TIGR00753 undec_PP_bacA undeca 24.7 3.3E+02 0.0072 26.2 7.7 52 53-104 151-202 (255)
204 TIGR00342 thiazole biosynthesi 24.7 2.2E+02 0.0048 28.9 7.0 36 326-365 172-207 (371)
205 PF11391 DUF2798: Protein of u 24.7 1.4E+02 0.0031 21.7 4.1 52 87-138 3-56 (60)
206 PRK05646 lipid A biosynthesis 24.4 1.3E+02 0.0028 29.7 5.1 51 305-363 192-242 (310)
207 PF13593 DUF4137: SBF-like CPA 24.4 7E+02 0.015 24.7 10.5 111 27-138 34-147 (313)
208 PF05232 BTP: Bacterial Transm 24.2 2.8E+02 0.0062 20.7 5.7 38 70-107 22-59 (67)
209 KOG2884 26S proteasome regulat 23.8 2.9E+02 0.0064 26.0 6.7 51 330-387 110-163 (259)
210 COG0037 MesJ tRNA(Ile)-lysidin 23.7 6.5E+02 0.014 24.1 11.5 100 165-286 21-133 (298)
211 PRK04972 putative transporter; 23.7 7.6E+02 0.016 26.7 11.1 123 20-143 56-190 (558)
212 COG1154 Dxs Deoxyxylulose-5-ph 23.7 8.4E+02 0.018 26.7 11.0 118 294-425 454-590 (627)
213 TIGR00383 corA magnesium Mg(2+ 23.5 1.4E+02 0.0029 29.4 5.1 30 17-47 257-289 (318)
214 KOG2575 Glucosyltransferase - 23.1 7.4E+02 0.016 25.7 9.9 114 28-147 233-353 (510)
215 cd02929 TMADH_HD_FMN Trimethyl 22.3 8.3E+02 0.018 24.8 11.3 123 285-427 194-322 (370)
216 PF01116 F_bP_aldolase: Fructo 22.2 1E+02 0.0023 30.2 3.9 69 246-318 16-85 (287)
217 TIGR01859 fruc_bis_ald_ fructo 22.2 3.5E+02 0.0075 26.5 7.5 68 246-317 15-85 (282)
218 COG1283 NptA Na+/phosphate sym 22.1 9.2E+02 0.02 26.0 10.9 133 10-142 91-238 (533)
219 PLN02331 phosphoribosylglycina 22.1 2.9E+02 0.0062 25.7 6.6 44 406-450 68-112 (207)
220 cd01990 Alpha_ANH_like_I This 22.0 1.6E+02 0.0035 26.7 5.0 34 329-365 1-34 (202)
221 PRK06946 lipid A biosynthesis 22.0 1.7E+02 0.0037 28.6 5.3 51 305-363 179-229 (293)
222 PRK09903 putative transporter 21.9 3.3E+02 0.0072 26.7 7.5 132 1-134 16-149 (314)
223 PLN03015 UDP-glucosyl transfer 21.8 1.2E+02 0.0026 32.1 4.4 36 328-363 5-41 (470)
224 PF15114 UPF0640: Uncharacteri 21.8 45 0.00097 25.0 0.9 16 24-39 21-36 (69)
225 COG3199 Predicted inorganic po 21.8 4.1E+02 0.0089 26.8 7.8 77 342-430 34-113 (355)
226 PRK08733 lipid A biosynthesis 21.7 1.7E+02 0.0036 28.8 5.3 50 305-362 193-242 (306)
227 COG0421 SpeE Spermidine syntha 21.7 2.3E+02 0.0051 27.7 6.2 27 399-428 133-160 (282)
228 PLN02152 indole-3-acetate beta 21.6 1.2E+02 0.0027 31.8 4.5 35 328-362 5-40 (455)
229 TIGR00841 bass bile acid trans 21.6 4.7E+02 0.01 25.4 8.3 46 58-103 200-246 (286)
230 PLN02173 UDP-glucosyl transfer 21.4 1.3E+02 0.0027 31.7 4.5 34 328-362 7-41 (449)
231 PLN02555 limonoid glucosyltran 21.3 1.2E+02 0.0026 32.1 4.4 34 328-362 9-43 (480)
232 COG1968 BacA Undecaprenyl pyro 21.3 5.1E+02 0.011 25.2 8.2 58 56-113 159-216 (270)
233 PRK01844 hypothetical protein; 21.0 2.2E+02 0.0047 21.8 4.4 26 52-77 4-29 (72)
234 PRK08610 fructose-bisphosphate 21.0 3.9E+02 0.0085 26.2 7.5 69 246-318 17-89 (286)
235 PRK07709 fructose-bisphosphate 20.6 4.6E+02 0.01 25.7 7.9 71 246-318 17-89 (285)
236 TIGR00434 cysH phosophoadenyly 20.5 1.1E+02 0.0023 28.3 3.5 39 327-369 14-52 (212)
237 COG3412 Uncharacterized protei 20.5 3.2E+02 0.0069 23.4 5.7 62 252-316 5-69 (129)
238 PRK07315 fructose-bisphosphate 20.1 3.8E+02 0.0082 26.4 7.3 107 246-357 17-133 (293)
239 TIGR01478 STEVOR variant surfa 20.0 3.8E+02 0.0082 26.3 6.9 46 96-143 243-288 (295)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=1.9e-85 Score=720.10 Aligned_cols=425 Identities=36% Similarity=0.662 Sum_probs=385.0
Q ss_pred eeEEecCCCCchhHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 042567 3 HLWVIPAGPPLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTR 82 (451)
Q Consensus 3 ~gl~~p~~~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~ 82 (451)
+|+++|+ +|+++++.+|++++++++|+|+||+++||++|+..+.++..|+++++++++++++|+++++++++++|+|++
T Consensus 302 aGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~ 380 (832)
T PLN03159 302 FGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFR 380 (832)
T ss_pred HhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 6999998 599999999999999999999999999999999988765567777788889999999999999999999999
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCcccchhccccchhhhccccCCCC
Q 042567 83 NDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRKRLDRISKIDNCIRTLQSTLP 162 (451)
Q Consensus 83 ~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (451)
|++.+|++||+||+++++++++|++.|+++++.|++++++++++|.+++|++.++|+|+|||..|++ |++|+.++
T Consensus 381 eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~-----r~i~~~~~ 455 (832)
T PLN03159 381 EGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKR-----RTIQRSKH 455 (832)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccc-----cccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCcceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCccccccccccccc-----ccccHHHHHHHHH
Q 042567 163 NSELRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRL-----VANSTDRIMRAMT 237 (451)
Q Consensus 163 ~~~~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~-----~~~~~~~i~~~f~ 237 (451)
++|+|||+|+|++++++++++|++.+++++++|.++|+||++|+++|+++.++.|+.++... .....|++.++|+
T Consensus 456 ~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~ 535 (832)
T PLN03159 456 DAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFE 535 (832)
T ss_pred CCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997643211 0245799999999
Q ss_pred HHHhcCCCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccC----CCcccccchhhhHHHHHHhhcCCccEEEee
Q 042567 238 RYSKGSGAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHE----NGEFQSRTACVQNFNKNVLSYAPCTVGIFV 313 (451)
Q Consensus 238 ~~~~~~~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~----~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilv 313 (451)
.|++.+ ++|+++++|++||+++||+|||+.|+|+++++||+|||+ ||.++..+..+|.+|++|+++|||+|||||
T Consensus 536 ~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlV 614 (832)
T PLN03159 536 NYEQHA-GCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILV 614 (832)
T ss_pred HHHhhc-CceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEE
Confidence 999754 589999999999999999999999999999999999998 788887788999999999999999999999
Q ss_pred cCCCCCCC---CCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCcc--------------------
Q 042567 314 DRGLTYYH---PSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVE-------------------- 370 (451)
Q Consensus 314 dr~~~~~~---~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~-------------------- 370 (451)
|||..... ..+..+||+++|+||+||||||+||+|||+|+++++||+||...++...
T Consensus 615 DRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (832)
T PLN03159 615 DRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETD 694 (832)
T ss_pred eCCCCccccccccccceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEccccccccccccccccccccccccccc
Confidence 99965321 1223479999999999999999999999999999999999986532211
Q ss_pred CchhhhcHHHHHHHHHhccCCCCCeEEEEEEeCChHHHHHHHHhcC-CCcEEEEcccCCCCcchh
Q 042567 371 SENDRCLDDAVTKEFMVGNVGNTRVECHEMVANDSKQLMDAIKKEK-DFELVIVDFAEGHMMSLL 434 (451)
Q Consensus 371 ~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~-~~DLiivG~~~~~~~~~~ 434 (451)
++.|++.|+++++||+.++..++++.|.|++|+||.|+++.+++++ +|||++|||+|+..+.+.
T Consensus 695 ~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~ 759 (832)
T PLN03159 695 GKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLT 759 (832)
T ss_pred chhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchh
Confidence 2347789999999999998777899999999999999999999998 799999999876533343
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-67 Score=568.72 Aligned_cols=419 Identities=36% Similarity=0.594 Sum_probs=377.2
Q ss_pred eeEEecCCCCchhHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 042567 3 HLWVIPAGPPLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTR 82 (451)
Q Consensus 3 ~gl~~p~~~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~ 82 (451)
.|+++|+|||+++++.+|+|++.+++|+|+||+++|+++|+..+.. |......+..++++|++++.+++.++++|+|
T Consensus 289 ~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~ 365 (769)
T KOG1650|consen 289 LGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLR 365 (769)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 6999999999999999999999999999999999999999999975 7888889999999999999999999999999
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCcccchhccccchhhhccccCCCC
Q 042567 83 NDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRKRLDRISKIDNCIRTLQSTLP 162 (451)
Q Consensus 83 ~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (451)
|++++|++||+||.+|+++++.|++.|+++++.|++++++++++|.++||++..+|+|.++|..|++ |++|+.++
T Consensus 366 ~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~-----~~i~~~~~ 440 (769)
T KOG1650|consen 366 DSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKK-----RGIQHLKP 440 (769)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEe-----ehhhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCcceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCccccccccccc-ccc--cccHHHHHHHHHHH
Q 042567 163 NSELRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKR-RLV--ANSTDRIMRAMTRY 239 (451)
Q Consensus 163 ~~~~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~-~~~--~~~~~~i~~~f~~~ 239 (451)
++++|||.|+|.++++++++++++++.+++++|..++++|++|+.+|+.|++..|..++. ... ....+++..+|+.|
T Consensus 441 ~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f 520 (769)
T KOG1650|consen 441 NSELRILTCLHGPENISGIINLLELSSGSLESPLSVYALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAF 520 (769)
T ss_pred CCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeeeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHH
Confidence 999999999999999999999999999987779999999999999999998888876543 221 44567889999999
Q ss_pred HhcCCCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccC----CCcccccchhhhHHHHHHhhcCCccEEEeecC
Q 042567 240 SKGSGAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHE----NGEFQSRTACVQNFNKNVLSYAPCTVGIFVDR 315 (451)
Q Consensus 240 ~~~~~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~----~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr 315 (451)
++..++.|.++++|.++|+.+||+|||..|.+++.++|++|+|+ +|..|+.+..++++|++|+++|||+|||++||
T Consensus 521 ~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdR 600 (769)
T KOG1650|consen 521 EKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDR 600 (769)
T ss_pred HHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEec
Confidence 98545689999999999999999999999999999999999999 44788888899999999999999999999999
Q ss_pred CCCC--CCC-CCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCcc----CchhhhcHHHHHHHH-Hh
Q 042567 316 GLTY--YHP-SNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVE----SENDRCLDDAVTKEF-MV 387 (451)
Q Consensus 316 ~~~~--~~~-~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~----~~~~~~~~~~~l~e~-~~ 387 (451)
|... ..+ .....+|++.|+||+|||||++++.||++|+++++||+|+...++..+ +++++..+++..+++ +.
T Consensus 601 g~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 680 (769)
T KOG1650|consen 601 GLRRSGVTQKRGSSYKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKS 680 (769)
T ss_pred CcccccceecccceeEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHH
Confidence 7211 011 122379999999999999999999999999999999999997644322 466777788888877 54
Q ss_pred ccCCCCCeEEE-EEEeCChHHHHHHHHhcC-CCcEEEEcccCCC
Q 042567 388 GNVGNTRVECH-EMVANDSKQLMDAIKKEK-DFELVIVDFAEGH 429 (451)
Q Consensus 388 ~~~~~~~v~y~-e~~v~~g~~~~~~i~~~~-~~DLiivG~~~~~ 429 (451)
.++.+..+.|. |+.+.++.|+.++++++. +|||++|||+++.
T Consensus 681 ~~~~~~~i~~~~ek~v~~~~et~~~~~~~~~~ydL~ivGr~~~~ 724 (769)
T KOG1650|consen 681 TRESNLDIIYAEEKIVLNGAETTALLRSITEDYDLFIVGRSHGM 724 (769)
T ss_pred hhhchhhhhhhhHHHHhcchhHHHHHHHhccccceEEEeccccc
Confidence 44445567787 699999999999999998 8999999999875
No 3
>PRK11175 universal stress protein UspE; Provisional
Probab=99.90 E-value=1.7e-22 Score=199.78 Aligned_cols=264 Identities=11% Similarity=0.058 Sum_probs=168.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhc-CCC
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKG-SGA 245 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~-~~~ 245 (451)
|||+|+|+++....+++.|..++.. .+.++++||+++-.....+........+... ....++..+.++++.+. ...
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 81 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLAQR--NGGKITAFLPIYDFSYEMTTLLSPDEREAMR-QGVISQRTAWIREQAKPYLDA 81 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHHHh--cCCCEEEEEeccCchhhhhcccchhHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 6999999999999999999999954 5678999998753221111100000000000 01111222233333321 123
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecCCCCCCCCCCc
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLTYYHPSNI 325 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~~~~~~ 325 (451)
+++++..+... +++++.|++.|+++++||||||+|+.+.+ ...++|++.+++++++||||+++.+.... .
T Consensus 82 ~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~--~~~~~gs~~~~l~~~~~~pvlvv~~~~~~------~ 151 (305)
T PRK11175 82 GIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKL--ESVIFTPTDWHLLRKCPCPVLMVKDQDWP------E 151 (305)
T ss_pred CCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHH--HhhccChhHHHHHhcCCCCEEEecccccC------C
Confidence 56666655432 78999999999999999999999983322 34478999999999999999887653211 1
Q ss_pred ceeEEEEecCCcch-------HHHHHHHHHHhcCC-CeEEEEEEEecCCCC---------ccCchhhhcH---HHHHHHH
Q 042567 326 CYNVAVFFLGGPDD-------REAMALVSRISSHP-GMSITIFRIDLLENS---------VESENDRCLD---DAVTKEF 385 (451)
Q Consensus 326 ~~~I~v~f~Gg~dd-------reAl~~a~rma~~~-~~~ltvv~v~~~~~~---------~~~~~~~~~~---~~~l~e~ 385 (451)
.++|+++.-|++.. ..|+++|.++|+.. +++++++++..+... ..++..+... ++.++++
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 231 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKAL 231 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 26898888876643 67999999999998 999999999753211 0111111111 2233444
Q ss_pred HhccCCCCCeEEEEEEeCChH---HHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCcc
Q 042567 386 MVGNVGNTRVECHEMVANDSK---QLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAKL 448 (451)
Q Consensus 386 ~~~~~~~~~v~y~e~~v~~g~---~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~~ 448 (451)
.... +... .+..+..|. ++.+++++. ++|||+||++++. +.++|+||.++.|++|++.
T Consensus 232 ~~~~-~~~~---~~~~v~~G~~~~~I~~~a~~~-~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~ 293 (305)
T PRK11175 232 RQKF-GIDE---EQTHVEEGLPEEVIPDLAEHL-DAELVILGTVGRTGLSAAFLGNTAEHVIDHLNC 293 (305)
T ss_pred HHHh-CCCh---hheeeccCCHHHHHHHHHHHh-CCCEEEECCCccCCCcceeecchHHHHHhcCCC
Confidence 3322 1111 112233332 233444444 8999999999765 9999999999999999873
No 4
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.77 E-value=2.3e-18 Score=184.90 Aligned_cols=133 Identities=13% Similarity=0.142 Sum_probs=118.3
Q ss_pred eeEEecCCCCchhHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 042567 3 HLWVIPAGPPLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTR 82 (451)
Q Consensus 3 ~gl~~p~~~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~ 82 (451)
+|+++|+. ++++++.++++++ .++|+|+||+++||++|+..+.+ .|+.++.++++.+++|++++++.++++|++++
T Consensus 246 aGl~l~~s-~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~ 321 (601)
T PRK03659 246 AGVLLAES-EYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYT--HLLWVLISVVVLVAVKGLVLYLLARLYGLRSS 321 (601)
T ss_pred HHHHhcCC-chHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 68999985 8999999999999 59999999999999999988864 45666777788899999999999999999999
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCc
Q 042567 83 NDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKP 140 (451)
Q Consensus 83 ~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~ 140 (451)
+++.+|++|+++|+++++++..|.+.|+++++.|+.+++++++|++ .+|++...|++
T Consensus 322 ~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~-~tP~l~~~~~~ 378 (601)
T PRK03659 322 ERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMM-TTPLLMKLIDK 378 (601)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHhHH
Confidence 9999999999999999999999999999999999999888888664 55565555555
No 5
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.76 E-value=2.6e-18 Score=184.99 Aligned_cols=133 Identities=15% Similarity=0.156 Sum_probs=116.3
Q ss_pred eeEEecCCCCchhHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 042567 3 HLWVIPAGPPLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTR 82 (451)
Q Consensus 3 ~gl~~p~~~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~ 82 (451)
+|+++|+. ++++++.+++++| .++|+|+||+++||++|+..+.. .|+.++.++++.+++|++++++.++++|++++
T Consensus 249 AGl~l~~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~--~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~ 324 (621)
T PRK03562 249 AGVLLASS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLE--NPLRILILLLGFLAIKIAMLWLLARPLGVPRK 324 (621)
T ss_pred HHHHhcCC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHh
Confidence 58899984 8999999999999 59999999999999999988763 45555666777899999999999999999999
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCc
Q 042567 83 NDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKP 140 (451)
Q Consensus 83 ~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~ 140 (451)
+++.+|++|+++|+++++++++|.+.|+++++.|+.+++++++|++++| ++..+|++
T Consensus 325 ~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP-~l~~~~~~ 381 (621)
T PRK03562 325 QRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATP-LLLVLLDR 381 (621)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-HHHHhhhH
Confidence 9999999999999999999999999999999999999987777555544 55455554
No 6
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.76 E-value=2e-18 Score=184.49 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=119.4
Q ss_pred eeEEecCCCCchhHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 042567 3 HLWVIPAGPPLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTR 82 (451)
Q Consensus 3 ~gl~~p~~~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~ 82 (451)
+|+++|+. |+++++.+.+.++ .++|+|+||+++||++|+..+.+ .+..++.++++.+++|++++++.++++|++++
T Consensus 257 aGl~l~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~--~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~ 332 (558)
T PRK10669 257 AGMVLNES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ--QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRR 332 (558)
T ss_pred HHHHHhCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 58889985 7899998888887 58999999999999999988763 34445567777899999999999999999999
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcC
Q 042567 83 NDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYK 139 (451)
Q Consensus 83 ~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~ 139 (451)
+++.+|++||+||+++++++.+|++.|+|+++.|+++++++++|++++|+++++..+
T Consensus 333 ~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~ 389 (558)
T PRK10669 333 TALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLER 389 (558)
T ss_pred hHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999988887654
No 7
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.65 E-value=4.3e-16 Score=159.25 Aligned_cols=135 Identities=21% Similarity=0.317 Sum_probs=121.9
Q ss_pred eeEEecCCCCch-hHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 042567 3 HLWVIPAGPPLG-SALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTST 81 (451)
Q Consensus 3 ~gl~~p~~~~~~-~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~ 81 (451)
+|+++++. +++ +++++|++++.+++|+|+||+++||++|++.+.. .+..+++++.+++++|++++++++|++|+++
T Consensus 252 aGl~ls~~-~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~--~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~ 328 (397)
T COG0475 252 AGLLLSES-EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE--NLLLILLLVALAILGKILGAYLAARLLGFSK 328 (397)
T ss_pred HHHHhccc-ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 58899997 556 7999999999988999999999999999999985 4555788899999999999999999999999
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCcc
Q 042567 82 RNDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPR 141 (451)
Q Consensus 82 ~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~ 141 (451)
++++..|.+|+++|++++++++++.+ +.++++.++..+.+++++|.+.+.+.+.+++..
T Consensus 329 ~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~~ 387 (397)
T COG0475 329 RLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKRL 387 (397)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988887 689999999999999998888888888877543
No 8
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.61 E-value=8.7e-15 Score=125.88 Aligned_cols=131 Identities=17% Similarity=0.317 Sum_probs=99.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCCCc
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGAA 246 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 246 (451)
|||+|++++++...+++++..+++. .+.+++++|+++.+..... ...... ....++.++.+.++... .+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~--~g 69 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSP----SQLEVN---VQRARKLLRQAERIAAS--LG 69 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCc----chhHHH---HHHHHHHHHHHHHHhhh--cC
Confidence 6999999999999999999999954 6789999999987543321 100001 23345555656555543 35
Q ss_pred eeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 247 VKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 247 V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
+.+++.+..+ +++.++|++.|++.++|+||||+++.+.. .+.++|+++++|++++||||+|+
T Consensus 70 ~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~--~~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 70 VPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSL--RDRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred CceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCc--cceecCchHHHHHhcCCCCEEEe
Confidence 6777777665 68999999999999999999999984333 34478999999999999999875
No 9
>PRK15456 universal stress protein UspG; Provisional
Probab=99.46 E-value=7e-13 Score=116.21 Aligned_cols=134 Identities=7% Similarity=0.037 Sum_probs=92.3
Q ss_pred eEEEEecCCC--CHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccc-cccccccccccccHHHHHHHHHHHHhcC
Q 042567 167 RILCCIHHED--NVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIV-PYNTQKRRLVANSTDRIMRAMTRYSKGS 243 (451)
Q Consensus 167 rILv~v~~~~--~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~-~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 243 (451)
|||+|+|+++ +...+++.|..++.. . .+++++|+++.... ..... .....+.. ....+...+.++++.+..
T Consensus 4 ~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 77 (142)
T PRK15456 4 TIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSAS-LSLHRFAADVRRFE--EHLQHEAEERLQTMVSHF 77 (142)
T ss_pred cEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCccc-ccccccccchhhHH--HHHHHHHHHHHHHHHHHh
Confidence 7999999984 899999999999853 3 48999999864321 11100 00000000 122233334455554321
Q ss_pred -CCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 244 -GAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 244 -~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
..++++++.+.. +++.++|++.|++.++||||||.||.| . .+.++||+.++|+++++|||+|+
T Consensus 78 ~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~-~--~~~llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 78 TIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPS-I--STHLLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred CCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCC-c--cceecCccHHHHHHcCCCCEEEe
Confidence 235666666654 799999999999999999999999854 3 33478999999999999999875
No 10
>PRK15005 universal stress protein F; Provisional
Probab=99.45 E-value=9.5e-13 Score=115.32 Aligned_cols=137 Identities=13% Similarity=0.107 Sum_probs=91.9
Q ss_pred eEEEEecCCCC--HHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcC-
Q 042567 167 RILCCIHHEDN--VNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGS- 243 (451)
Q Consensus 167 rILv~v~~~~~--~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~- 243 (451)
+||+|+|++++ ...+++.|..++.. .+.+++++|+++............. .+........+...+.++++.+..
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEAKI--DDAEVHFLTVIPSLPYYASLGLAYS-AELPAMDDLKAEAKSQLEEIIKKFK 80 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHHhc--cCCeEEEEEEEccCccccccccccc-ccchHHHHHHHHHHHHHHHHHHHhC
Confidence 69999999998 57899999998853 5688999999975322111100000 000000112233334455554432
Q ss_pred CCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 244 GAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 244 ~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
..+++++..+.. +++.+.|++.|++.++||||||.|+.|. .+.++||+.++|++++||||+|+
T Consensus 81 ~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~~~---~~~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 81 LPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHRPDI---TTYLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred CCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCCCCc---hheeecchHHHHHHhCCCCEEEe
Confidence 234456655543 7899999999999999999999986433 34488999999999999999875
No 11
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.45 E-value=1.7e-14 Score=147.08 Aligned_cols=136 Identities=24% Similarity=0.318 Sum_probs=22.9
Q ss_pred ceeEEecCCCCchhHHHHhhhhhhhhhhhhHHHhhhcccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 042567 2 GHLWVIPAGPPLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIK-DWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTS 80 (451)
Q Consensus 2 ~~gl~~p~~~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~-~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~ 80 (451)
-+|++++ +.+.++++.++++++.+++|.|+||+.+|+++|++.+. +...|...+++++..+++|++++++.+++.|++
T Consensus 242 ~~Gl~~~-~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 320 (380)
T PF00999_consen 242 IAGLILS-NSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLFGIP 320 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeehccc-cccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhcccc
Confidence 3699999 45888889999999999999999999999999998884 334666677777777799999999999999999
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhc
Q 042567 81 TRNDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFY 138 (451)
Q Consensus 81 ~~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~ 138 (451)
+++++.+|+.|++||+++++++..+.+.|+++++.+++++.++++|+++.|+.++.+.
T Consensus 321 ~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 321 WKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp --HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred cchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998888887654
No 12
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.41 E-value=1.6e-12 Score=114.13 Aligned_cols=134 Identities=9% Similarity=0.065 Sum_probs=88.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCCCc
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGAA 246 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 246 (451)
|||+|+|++++...+++.+..++.. .+.++++||+.................+.. ....+...+.++++.+.. +
T Consensus 5 ~ILvavD~S~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~--~ 78 (144)
T PRK15118 5 HILIAVDLSPESKVLVEKAVSMARP--YNAKVSLIHVDVNYSDLYTGLIDVNLGDMQ--KRISEETHHALTELSTNA--G 78 (144)
T ss_pred EEEEEccCChhHHHHHHHHHHHHHh--hCCEEEEEEEccChhhhhhhhhhcchHHHH--HHHHHHHHHHHHHHHHhC--C
Confidence 7999999999999999999999853 567899999843111100000000000000 122333444555554432 4
Q ss_pred eeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEee
Q 042567 247 VKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFV 313 (451)
Q Consensus 247 V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilv 313 (451)
+.+...... .+++++.|++.|++.++||||||.|+ +.. . .+||+.++|++++||||+|+.
T Consensus 79 ~~~~~~~~~--~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~---~-~lgSva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 79 YPITETLSG--SGDLGQVLVDAIKKYDMDLVVCGHHQ-DFW---S-KLMSSARQLINTVHVDMLIVP 138 (144)
T ss_pred CCceEEEEE--ecCHHHHHHHHHHHhCCCEEEEeCcc-cHH---H-HHHHHHHHHHhhCCCCEEEec
Confidence 444322222 28899999999999999999999996 322 1 368999999999999998864
No 13
>PRK09982 universal stress protein UspD; Provisional
Probab=99.39 E-value=2.6e-12 Score=112.81 Aligned_cols=133 Identities=11% Similarity=0.042 Sum_probs=88.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCCCc
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGAA 246 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 246 (451)
+||+|+|+++++..+++.|..+++ +.+.+++++|+++......+........+.. ....+...+.++.+.+.. +.
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA~--~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~-~~ 79 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELAR--HNDAHLTLIHIDDGLSELYPGIYFPATEDIL--QLLKNKSDNKLYKLTKNI-QW 79 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHHH--HhCCeEEEEEEccCcchhchhhhccchHHHH--HHHHHHHHHHHHHHHHhc-CC
Confidence 699999999999999999999994 4778999999986432111000000000000 122222333444444332 22
Q ss_pred eeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 247 VKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 247 V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
..++..+.. +++++.|++.|++.++||||||.|.+|. . ..++ +.++|+++++|||+|+
T Consensus 80 ~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~~~~~---~-~~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 80 PKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHHHSFI---N-RLMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred CcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCChhHH---H-HHHH-HHHHHHhcCCCCEEEe
Confidence 234444444 8999999999999999999999764332 1 2455 9999999999999886
No 14
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.38 E-value=6.2e-12 Score=110.46 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=91.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccc-cccHHHHHHHHHHHHhc-CC
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLV-ANSTDRIMRAMTRYSKG-SG 244 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~-~~~~~~i~~~f~~~~~~-~~ 244 (451)
+||+|+|.+++...+++.+..++.. ...+++++|+++.+...... ... ....... ....++..+.++++.+. ..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~--~~~~l~ll~v~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 76 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT--KGQTIVLVHVHPPITSIPSS-SGK-LEVASAYKQEEDKEAKELLLPYRCFCSR 76 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC--CCCcEEEEEeccCcccCCCC-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4999999999999999999999854 56789999998753221110 000 0000000 11122222333333222 12
Q ss_pred CceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhh-HHHHHHhhcCC--ccEEEee
Q 042567 245 AAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQ-NFNKNVLSYAP--CTVGIFV 313 (451)
Q Consensus 245 ~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~g-s~~~~Vl~~ap--c~V~Ilv 313 (451)
.++.++..+... +++++.|++.|++.++|+||||.|+.+.+ .+.++| ++.++|++++| |||.|+.
T Consensus 77 ~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l--~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 77 KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHF--SMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCce--eecccCCchhHHHHhcCCCCceEEEEe
Confidence 356666655542 58999999999999999999999984333 233666 69999999999 9998753
No 15
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.34 E-value=8.4e-12 Score=106.47 Aligned_cols=122 Identities=14% Similarity=0.165 Sum_probs=90.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCCCc
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGAA 246 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 246 (451)
|||+|+++++....+++.+..++.. .+..++++|+++-.. . . . ....++.++.+.++.+.. +
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~-~-~----~--------~~~~~~~l~~~~~~~~~~--~ 62 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR--LKAPWYVVYVETPRL-N-R----L--------SEAERRRLAEALRLAEEL--G 62 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH--hCCCEEEEEEecCcc-c-c----C--------CHHHHHHHHHHHHHHHHc--C
Confidence 6999999999999999999999954 667899999986321 1 0 0 122344455455444432 3
Q ss_pred eeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcC-CccEEEe
Q 042567 247 VKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYA-PCTVGIF 312 (451)
Q Consensus 247 V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~a-pc~V~Il 312 (451)
+. ..+... +++.+.|++.+++.++|+||||+|+.+.+ .+.++||+.++|++++ +|||.|+
T Consensus 63 ~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~--~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 63 AE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRW--RELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred CE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchH--HHHhcccHHHHHHHhCCCCeEEEe
Confidence 33 223333 78899999999999999999999985544 3458999999999999 9998875
No 16
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.27 E-value=8.2e-12 Score=107.02 Aligned_cols=133 Identities=12% Similarity=0.158 Sum_probs=88.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHH---HHHhcC
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMT---RYSKGS 243 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~---~~~~~~ 243 (451)
|||+|++++++...+++.+..++.. ....|+++|+++......... ...... ....+....... ......
T Consensus 4 ~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 76 (140)
T PF00582_consen 4 RILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSA--AEDEES---EEEAEEEEQARQAEAEEAEAE 76 (140)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeecccccccccc--cccccc---ccccchhhhhhhHHHHHHhhh
Confidence 8999999999999999999999954 678999999998654322110 000000 000111110000 111111
Q ss_pred CCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 244 GAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 244 ~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
........+. + ++..++|++.+++.++|+||||+++.+.. ...++|++.+++++++||||.|+
T Consensus 77 -~~~~~~~~~~-~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~--~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 77 -GGIVIEVVIE-S--GDVADAIIEFAEEHNADLIVMGSRGRSGL--ERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp -TTSEEEEEEE-E--SSHHHHHHHHHHHTTCSEEEEESSSTTST--TTSSSHHHHHHHHHHTSSEEEEE
T ss_pred -ccceeEEEEE-e--eccchhhhhccccccceeEEEeccCCCCc--cCCCcCCHHHHHHHcCCCCEEEe
Confidence 2223333333 2 89999999999999999999999983333 23489999999999999999875
No 17
>PRK10116 universal stress protein UspC; Provisional
Probab=99.22 E-value=1e-10 Score=102.15 Aligned_cols=134 Identities=10% Similarity=0.034 Sum_probs=89.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccc-cccHHHHHHHHHHHHhcCCC
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLV-ANSTDRIMRAMTRYSKGSGA 245 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~-~~~~~~i~~~f~~~~~~~~~ 245 (451)
|||+++|.+++...+++.+..++.. .+.+++++|+++.+.... .. ... ..... ....++..+.++++.+. .
T Consensus 5 ~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~l~~~~~~--~ 76 (142)
T PRK10116 5 NILVAVAVTPESQQLLAKAVSIARP--VNGKISLITLASDPEMYN-QF-AAP--MLEDLRSVMQEETQSFLDKLIQD--A 76 (142)
T ss_pred eEEEEccCCcchHHHHHHHHHHHHH--hCCEEEEEEEccCcccch-hh-hHH--HHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 7999999999999999999999953 567899999986432110 00 000 00000 12223333445555443 2
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeec
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVD 314 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvd 314 (451)
+++...... ..++..+.|++.|++.++||||||.|+.+.+. -++++.++|+++++|||+|+..
T Consensus 77 ~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~----~~~s~a~~v~~~~~~pVLvv~~ 139 (142)
T PRK10116 77 DYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFS----RASCSAKRVIASSEVDVLLVPL 139 (142)
T ss_pred CCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHH----HHHHHHHHHHhcCCCCEEEEeC
Confidence 443322222 24899999999999999999999999832221 1247899999999999988743
No 18
>PRK11175 universal stress protein UspE; Provisional
Probab=99.12 E-value=3.5e-10 Score=111.78 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=92.4
Q ss_pred ceEEEEecCCCCH-------HHHHHHHHHhCCCCCC-CceEEEEEEeeccCCCCcccccc-cccccccccccHHHHHHHH
Q 042567 166 LRILCCIHHEDNV-------NGIINLLRASNPTEMN-PICAYAVHLIDLVGRALPVIVPY-NTQKRRLVANSTDRIMRAM 236 (451)
Q Consensus 166 ~rILv~v~~~~~~-------~~ll~la~~la~~~~~-~~~v~~Lhlvel~~r~~~~~~~~-~~~~~~~~~~~~~~i~~~f 236 (451)
-+||+|+|.++.. ..+++.+..++.. . ...++++|+.+............ ...+.. ....++..+.+
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 228 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ--LNHAEVHLVNAYPVTPINIAIELPEFDPSVYN--DAIRGQHLLAM 228 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh--CcCCceEEEEEecCcchhccccccccchhhHH--HHHHHHHHHHH
Confidence 4899999987653 5688899888854 4 57899999986443211000000 000000 11223334455
Q ss_pred HHHHhcCCCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecCC
Q 042567 237 TRYSKGSGAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRG 316 (451)
Q Consensus 237 ~~~~~~~~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~ 316 (451)
+++.+.. +++........ +++.+.|++.|++.++||||||+|+.+.+ .+.++||+.++|++++||||+++..++
T Consensus 229 ~~~~~~~--~~~~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~--~~~llGS~a~~v~~~~~~pVLvv~~~~ 302 (305)
T PRK11175 229 KALRQKF--GIDEEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGL--SAAFLGNTAEHVIDHLNCDLLAIKPDG 302 (305)
T ss_pred HHHHHHh--CCChhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCC--cceeecchHHHHHhcCCCCEEEEcCCC
Confidence 5555432 33322222222 78899999999999999999999983333 345899999999999999999986665
Q ss_pred C
Q 042567 317 L 317 (451)
Q Consensus 317 ~ 317 (451)
+
T Consensus 303 ~ 303 (305)
T PRK11175 303 Y 303 (305)
T ss_pred C
Confidence 4
No 19
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.11 E-value=7.4e-10 Score=93.76 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=91.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCCCc
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGAA 246 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 246 (451)
+||+|+++++....+++.+..++.. .+..++++|+.+-...... .... .. ....++.++.+...... .+
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~--~~~~i~~l~v~~~~~~~~~---~~~~-~~---~~~~~~~l~~~~~~~~~--~~ 69 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR--LGAELVLLHVVDPPPSSAA---ELAE-LL---EEEARALLEALREALAE--AG 69 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCCCCcch---hHHH-HH---HHHHHHHHHHHHHHHhc--CC
Confidence 5999999999999999999999965 5688999999764432211 0000 00 22233344444433222 35
Q ss_pred eeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEE
Q 042567 247 VKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGI 311 (451)
Q Consensus 247 V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~I 311 (451)
++++..... ++..++|++.+++.++|++|+|+++.+.+ ...++|+..++++++++|||.+
T Consensus 70 ~~~~~~~~~---~~~~~~i~~~~~~~~~dlvvig~~~~~~~--~~~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 70 VKVETVVLE---GDPAEAILEAAEELGADLIVMGSRGRSGL--RRLLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred CceEEEEec---CCCHHHHHHHHHHcCCCEEEEcCCCCCcc--ceeeeccHHHHHHhCCCCCEEe
Confidence 666655553 45589999999999999999999984443 2347899999999999999876
No 20
>PRK05326 potassium/proton antiporter; Reviewed
Probab=99.07 E-value=1.1e-10 Score=125.03 Aligned_cols=136 Identities=15% Similarity=0.136 Sum_probs=110.6
Q ss_pred eeEEecCCCCchhHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 042567 3 HLWVIPAGPPLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTR 82 (451)
Q Consensus 3 ~gl~~p~~~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~ 82 (451)
+|+++++.++..+.-.++.......++.|+||+++|+.+|+..+.+. .|..+.+.+++.+++|.++++++.+.++++++
T Consensus 253 aGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~ 331 (562)
T PRK05326 253 AGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-ALPALLLALFLILVARPLAVFLSLLPFRFNLR 331 (562)
T ss_pred HHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCHh
Confidence 58888887655555555566555689999999999999999887632 23333344556789999999999999999999
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHHhHHHHHHHhcCc
Q 042567 83 NDLLFGCFLNIKGIIELLVFLRWIIYKPID-VQTFSTLVLFNLVLTAIVTPLISIFYKP 140 (451)
Q Consensus 83 ~s~~~g~~m~~~G~~~li~~~~~~~~g~i~-~~~~~~~v~~~~vtt~i~~pl~~~~~~~ 140 (451)
|++.+|.. ..||+++++++.+++..|+.+ +..|++..+++++|+++.++.+..+.+.
T Consensus 332 e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~ 389 (562)
T PRK05326 332 EKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARK 389 (562)
T ss_pred hhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHH
Confidence 99999985 789999999999999999986 5678888889999999988888876643
No 21
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.05 E-value=7.1e-10 Score=94.49 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=78.5
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEEEEeCCh-H
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHEMVANDS-K 406 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~g-~ 406 (451)
||++++-|++.+++++++|.++|+..+++++++++.++......+..++..+++.+..+. . .+.+....-.+. .
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~-~----~~~~~~~~~~~~~~ 75 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEE-L----GAEVVTLPGDDVAE 75 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHH-c----CCEEEEEeCCcHHH
Confidence 588999999999999999999999999999999998764321111122222233332221 1 122221111121 3
Q ss_pred HHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCcc
Q 042567 407 QLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAKL 448 (451)
Q Consensus 407 ~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~~ 448 (451)
.+.+++++. +.||+++|++++. +.+++.||.++.+++||..
T Consensus 76 ~I~~~~~~~-~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~ 117 (124)
T cd01987 76 AIVEFAREH-NVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGN 117 (124)
T ss_pred HHHHHHHHc-CCCEEEeCCCCCchHHHHhcccHHHHHHHhCCC
Confidence 344555555 8999999999876 9999999999999999933
No 22
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.01 E-value=2.2e-09 Score=94.17 Aligned_cols=118 Identities=13% Similarity=0.178 Sum_probs=79.9
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccC------------chhhhcHHHHHHHHHhccCCCCCe
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVES------------ENDRCLDDAVTKEFMVGNVGNTRV 395 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~------------~~~~~~~~~~l~e~~~~~~~~~~v 395 (451)
+|++++-|++..+.|+++|.++++..+.+++++|+.++...... ...++..++.++++..... ...+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-RKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence 47899999999999999999999999999999999865322111 0111223445554443211 1223
Q ss_pred EEEEEEeCCh---HHHHHHHHhcCCCcEEEEcccCCC-Ccchhhh-hhHHHHhhcCc
Q 042567 396 ECHEMVANDS---KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVI-QSVESIKQGAK 447 (451)
Q Consensus 396 ~y~e~~v~~g---~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~g-s~~e~i~~~~~ 447 (451)
.+....+..| .++++.+++. ++|||+||++++. +.++++| |+++.|++||+
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~~~-~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~ 135 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVADH-GITKLVMGASSDNHFSMKFKKSDVASSVLKEAP 135 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHHHc-CCCEEEEeccCCCceeecccCCchhHHHHhcCC
Confidence 3333344332 3334444444 8999999999876 8899998 69999999987
No 23
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.00 E-value=2.4e-09 Score=101.77 Aligned_cols=132 Identities=16% Similarity=0.205 Sum_probs=108.1
Q ss_pred eEEecCCCCchhHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 042567 4 LWVIPAGPPLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRN 83 (451)
Q Consensus 4 gl~~p~~~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~ 83 (451)
|+++.+. .+.++..+..-++ .+.|.-+||+++||..|...+.+ ..+.++..+++...||-+.++...+.||+|.|.
T Consensus 258 GMvL~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~--~pl~vlatllii~~gKs~aaf~ivr~Fg~~~~T 333 (408)
T COG4651 258 GMVLAES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQ--QPLAVLATLLIILFGKSVAAFFIVRAFGHPVRT 333 (408)
T ss_pred HHHhcch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhc--chHHHHHHHHHHHhhhHHHHHHHHHHhCCcchH
Confidence 5555554 7888888888887 58999999999999999987764 223455666777899999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCc
Q 042567 84 DLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKP 140 (451)
Q Consensus 84 s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~ 140 (451)
++.++..+.+.|||++|+...|.+.+++++..-...+..+++ +++..|+.....++
T Consensus 334 aLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~Lvlagail-sIl~nPllf~~~dr 389 (408)
T COG4651 334 ALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAIL-SILLNPLLFALLDR 389 (408)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHH-HHHHhHHHHHHHHH
Confidence 999999999999999999999999999996666655555544 68888887776554
No 24
>PRK15005 universal stress protein F; Provisional
Probab=98.96 E-value=3.9e-09 Score=92.29 Aligned_cols=119 Identities=7% Similarity=0.027 Sum_probs=77.4
Q ss_pred eeEEEEecCCcc--hHHHHHHHHHHhcCCCeEEEEEEEecCCCCc-------cCc-----hhhhcHHHHHHHHHhccCCC
Q 042567 327 YNVAVFFLGGPD--DREAMALVSRISSHPGMSITIFRIDLLENSV-------ESE-----NDRCLDDAVTKEFMVGNVGN 392 (451)
Q Consensus 327 ~~I~v~f~Gg~d--dreAl~~a~rma~~~~~~ltvv~v~~~~~~~-------~~~-----~~~~~~~~~l~e~~~~~~~~ 392 (451)
++|++|+-|++. .+.|+++|.++|+..+++++++++.++.... ..+ ..++..++.++++..... .
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 81 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFK-L 81 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhC-C
Confidence 589999998887 4799999999999999999999998642110 000 011112233344333221 1
Q ss_pred CCeEEEEEEeCChHHHHHHHHhcC--CCcEEEEcccCCCCcchhhhhhHHHHhhcCc
Q 042567 393 TRVECHEMVANDSKQLMDAIKKEK--DFELVIVDFAEGHMMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 393 ~~v~y~e~~v~~g~~~~~~i~~~~--~~DLiivG~~~~~~~~~~~gs~~e~i~~~~~ 447 (451)
..+.+ +..+..|.....+++.++ ++|||++|++++.+.++++||.++.|++||+
T Consensus 82 ~~~~~-~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~ 137 (144)
T PRK15005 82 PTDRV-HVHVEEGSPKDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAE 137 (144)
T ss_pred CCCce-EEEEeCCCHHHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCC
Confidence 22222 233334433233444332 8999999998555899999999999999987
No 25
>PRK09982 universal stress protein UspD; Provisional
Probab=98.94 E-value=2.5e-09 Score=93.84 Aligned_cols=115 Identities=11% Similarity=0.165 Sum_probs=75.6
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCc-------c-Cch---hhhcHHHHHHHHHhccCCCCCe
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSV-------E-SEN---DRCLDDAVTKEFMVGNVGNTRV 395 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~-------~-~~~---~~~~~~~~l~e~~~~~~~~~~v 395 (451)
++|++|.-|+++.+.|++.|.++|+.++++++++|+.++.... . ++. .++..++.++++..... ...
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~- 81 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPK- 81 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCc-
Confidence 6899999999999999999999999999999999998642110 0 000 01112233444443221 112
Q ss_pred EEEEEEeCCh---HHHHHHHHhcCCCcEEEEcccCCCCcchhhhhhHHHHhhcCcc
Q 042567 396 ECHEMVANDS---KQLMDAIKKEKDFELVIVDFAEGHMMSLLVIQSVESIKQGAKL 448 (451)
Q Consensus 396 ~y~e~~v~~g---~~~~~~i~~~~~~DLiivG~~~~~~~~~~~gs~~e~i~~~~~~ 448 (451)
.+..+..| .++.+.+++. ++|||+||+|++.+.+++ | +++.|+|||+.
T Consensus 82 --~~~~v~~G~p~~~I~~~A~~~-~aDLIVmG~~~~~~~~~~-~-va~~V~~~s~~ 132 (142)
T PRK09982 82 --TKLRIERGEMPETLLEIMQKE-QCDLLVCGHHHSFINRLM-P-AYRGMINKMSA 132 (142)
T ss_pred --ceEEEEecCHHHHHHHHHHHc-CCCEEEEeCChhHHHHHH-H-HHHHHHhcCCC
Confidence 22333344 3333443444 899999998643478888 5 99999999974
No 26
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.91 E-value=8.3e-09 Score=88.18 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=80.5
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCch--hhh----cHHHHHHH-----HHhccCCCCCe
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVESEN--DRC----LDDAVTKE-----FMVGNVGNTRV 395 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~--~~~----~~~~~l~e-----~~~~~~~~~~v 395 (451)
+||++++-|+++++.|+++|.++|+..+++++++++.++........ ... ..+..... ..... ....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 80 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAE--GGIV 80 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTSE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhh--ccce
Confidence 68999999999999999999999999999999999997643221100 000 00000000 00111 1223
Q ss_pred EEEEEEeCCh-HHHHHHHHhcCCCcEEEEcccCC-CCcchhhhhhHHHHhhcCcc
Q 042567 396 ECHEMVANDS-KQLMDAIKKEKDFELVIVDFAEG-HMMSLLVIQSVESIKQGAKL 448 (451)
Q Consensus 396 ~y~e~~v~~g-~~~~~~i~~~~~~DLiivG~~~~-~~~~~~~gs~~e~i~~~~~~ 448 (451)
.+......+. .++.+++++. ++|||++|++++ .+.++++||.++.|++|+..
T Consensus 81 ~~~~~~~~~~~~~i~~~~~~~-~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~ 134 (140)
T PF00582_consen 81 IEVVIESGDVADAIIEFAEEH-NADLIVMGSRGRSGLERLLFGSVAEKLLRHAPC 134 (140)
T ss_dssp EEEEEEESSHHHHHHHHHHHT-TCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSS
T ss_pred eEEEEEeeccchhhhhccccc-cceeEEEeccCCCCccCCCcCCHHHHHHHcCCC
Confidence 3334444444 4445555555 899999999995 59999999999999999873
No 27
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.88 E-value=2.4e-08 Score=85.51 Aligned_cols=118 Identities=12% Similarity=0.138 Sum_probs=78.3
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCcc---CchhhhcHHHHHHHHHhccCCCCCeEEEEEEeCC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVE---SENDRCLDDAVTKEFMVGNVGNTRVECHEMVAND 404 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~---~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~ 404 (451)
||++|.-|+++.+.++++|.+||+..+++++++|+.++..... .....+..++.++.+.......+ +........+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~ 79 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLG-VPVHTIIRID 79 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcC-CceEEEEEec
Confidence 5899999999999999999999999999999999987532111 11112223334443332211111 1121122222
Q ss_pred h---HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 405 S---KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 405 g---~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
| .++.+.+++. ++|||++|.+++. +.+.++||.++.+++|++
T Consensus 80 ~~~~~~I~~~a~~~-~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~ 125 (132)
T cd01988 80 HDIASGILRTAKER-QADLIIMGWHGSTSLRDRLFGGVIDQVLESAP 125 (132)
T ss_pred CCHHHHHHHHHHhc-CCCEEEEecCCCCCccceecCchHHHHHhcCC
Confidence 2 3344445444 8999999999876 779999999999999987
No 28
>PRK15456 universal stress protein UspG; Provisional
Probab=98.88 E-value=2.1e-08 Score=87.77 Aligned_cols=118 Identities=7% Similarity=-0.014 Sum_probs=76.7
Q ss_pred eeEEEEecCCc--chHHHHHHHHHHhcCCCeEEEEEEEecCCCCc------c--Cchh---hhcHHHHHHHHHhccCCCC
Q 042567 327 YNVAVFFLGGP--DDREAMALVSRISSHPGMSITIFRIDLLENSV------E--SEND---RCLDDAVTKEFMVGNVGNT 393 (451)
Q Consensus 327 ~~I~v~f~Gg~--ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~------~--~~~~---~~~~~~~l~e~~~~~~~~~ 393 (451)
++|++|+-|++ .+..|+++|..+|+.. .+++++++.++.... . ++.+ ++..++.++++..... ..
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 80 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFT-ID 80 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 68999999874 7999999999999875 599999998653210 0 0011 1122233444443221 12
Q ss_pred CeEEEEEEeCChH---HHHHHHHhcCCCcEEEEcccCCCCcchhhhhhHHHHhhcCcc
Q 042567 394 RVECHEMVANDSK---QLMDAIKKEKDFELVIVDFAEGHMMSLLVIQSVESIKQGAKL 448 (451)
Q Consensus 394 ~v~y~e~~v~~g~---~~~~~i~~~~~~DLiivG~~~~~~~~~~~gs~~e~i~~~~~~ 448 (451)
...+ +..+..|. ++.+.+++. +.||||||++++.+.+.|+||.++.|++||+.
T Consensus 81 ~~~v-~~~v~~G~~~~~I~~~a~~~-~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~~ 136 (142)
T PRK15456 81 PSRI-KQHVRFGSVRDEVNELAEEL-GADVVVIGSRNPSISTHLLGSNASSVIRHANL 136 (142)
T ss_pred Ccce-EEEEcCCChHHHHHHHHhhc-CCCEEEEcCCCCCccceecCccHHHHHHcCCC
Confidence 2222 33344443 233333333 89999999998778889999999999999873
No 29
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.81 E-value=1.9e-08 Score=88.17 Aligned_cols=116 Identities=9% Similarity=0.152 Sum_probs=72.4
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCc-c----C---chhhhc---HHHHHHHHHhccCCCCCe
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSV-E----S---ENDRCL---DDAVTKEFMVGNVGNTRV 395 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~-~----~---~~~~~~---~~~~l~e~~~~~~~~~~v 395 (451)
++|+++.-|++.++.|+++|..+|+.++++++++++..+.... . . +..++. ..+.++++.... .+
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 79 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA----GY 79 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC----CC
Confidence 6899999999999999999999999999999999995331110 0 0 001111 112233332211 11
Q ss_pred EEEEEEeCChHHHHHHHHhcC--CCcEEEEcccCCCCcchhhhhhHHHHhhcCcc
Q 042567 396 ECHEMVANDSKQLMDAIKKEK--DFELVIVDFAEGHMMSLLVIQSVESIKQGAKL 448 (451)
Q Consensus 396 ~y~e~~v~~g~~~~~~i~~~~--~~DLiivG~~~~~~~~~~~gs~~e~i~~~~~~ 448 (451)
...+..+..|.....+++.++ ++||||+|+|+ +..+. +||.+|.|++||+.
T Consensus 80 ~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~-lgSva~~v~~~a~~ 132 (144)
T PRK15118 80 PITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFWSK-LMSSARQLINTVHV 132 (144)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHHHH-HHHHHHHHHhhCCC
Confidence 122333333432233444432 89999999996 43344 58999999999974
No 30
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.66 E-value=4.9e-07 Score=79.08 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=91.3
Q ss_pred ceEEEEec-CCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccc---cccc-cccHHHHHHHHHHHH
Q 042567 166 LRILCCIH-HEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQK---RRLV-ANSTDRIMRAMTRYS 240 (451)
Q Consensus 166 ~rILv~v~-~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~---~~~~-~~~~~~i~~~f~~~~ 240 (451)
.+||++++ .++....+.+.+..++.. ....++++++++................ .... ....++..+.+++..
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKR--LGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHh--cCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 47999999 999999999999998865 4566788888865443222211100000 0000 222344455555544
Q ss_pred hcCCCcee-EeeEEEEcCCCCc-hHhHHHHHHhCCCCEEEEeccC-CCcccccchhhhHHHHHHhhcCCccEEEee
Q 042567 241 KGSGAAVK-VQPFKMISPYNTM-HQSICKLVEDNLIPLVLLPFHE-NGEFQSRTACVQNFNKNVLSYAPCTVGIFV 313 (451)
Q Consensus 241 ~~~~~~V~-v~~~~~vs~~~~~-~~~I~~~A~e~~~dLIvlg~h~-~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilv 313 (451)
+.. ++. +...... .++ .+.|+..|.+.++|+||||.++ .+. ...++||+.++|++++||||.++.
T Consensus 84 ~~~--~~~~~~~~~~~---g~~~~~~i~~~a~~~~adliV~G~~g~~~l---~~~llGsvs~~v~~~~~~pVlvv~ 151 (154)
T COG0589 84 EAA--GVPVVETEVVE---GSPSAEEILELAEEEDADLIVVGSRGRSGL---SRLLLGSVAEKVLRHAPCPVLVVR 151 (154)
T ss_pred HHc--CCCeeEEEEec---CCCcHHHHHHHHHHhCCCEEEECCCCCccc---cceeeehhHHHHHhcCCCCEEEEc
Confidence 432 333 3434443 566 6999999999999999999987 333 224899999999999999997764
No 31
>PRK10116 universal stress protein UspC; Provisional
Probab=98.66 E-value=1.2e-07 Score=82.61 Aligned_cols=116 Identities=9% Similarity=0.081 Sum_probs=76.1
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCC----ccC---ch---hhhcHHHHHHHHHhccCCCCCeE
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENS----VES---EN---DRCLDDAVTKEFMVGNVGNTRVE 396 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~----~~~---~~---~~~~~~~~l~e~~~~~~~~~~v~ 396 (451)
++|+++.-++++...|+++|.++|+..+++++++++..+... ... +. ..+..++++++..... .+.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 79 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA----DYP 79 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----CCC
Confidence 789999998999999999999999999999999999754211 000 00 0111233444443322 111
Q ss_pred EEEEEeCChHHHHHHHHhcC--CCcEEEEcccCCC-CcchhhhhhHHHHhhcCcc
Q 042567 397 CHEMVANDSKQLMDAIKKEK--DFELVIVDFAEGH-MMSLLVIQSVESIKQGAKL 448 (451)
Q Consensus 397 y~e~~v~~g~~~~~~i~~~~--~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~~ 448 (451)
.....+..|.....+++..+ ++||||+|++++. +.+++ |.+|.+++||+.
T Consensus 80 ~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s~a~~v~~~~~~ 132 (142)
T PRK10116 80 IEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--CSAKRVIASSEV 132 (142)
T ss_pred eEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--HHHHHHHhcCCC
Confidence 22233444433334444443 8999999999876 77775 789999999974
No 32
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.62 E-value=4.4e-07 Score=76.50 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=78.6
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCcc---CchhhhcHHHHHHHHHhccCCCCCeEEEEEEe-C
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVE---SENDRCLDDAVTKEFMVGNVGNTRVECHEMVA-N 403 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~---~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v-~ 403 (451)
+|++++-+++....+++.|.++|+..+.+++++++..+..... ........++.++.+..... ...+.+..... .
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 79 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALA-EAGVKVETVVLEG 79 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHh-cCCCceEEEEecC
Confidence 5788999899999999999999999999999999986543211 01122223344444443210 11122221222 1
Q ss_pred C-hHHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 404 D-SKQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 404 ~-g~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
+ ..++.+.+++. ++|++++|++++. +.+.+.|+.++.+++++.
T Consensus 80 ~~~~~i~~~~~~~-~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~ 124 (130)
T cd00293 80 DPAEAILEAAEEL-GADLIVMGSRGRSGLRRLLLGSVAERVLRHAP 124 (130)
T ss_pred CCHHHHHHHHHHc-CCCEEEEcCCCCCccceeeeccHHHHHHhCCC
Confidence 1 23445555555 8999999999866 788999999999999864
No 33
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.26 E-value=1.3e-05 Score=81.80 Aligned_cols=135 Identities=11% Similarity=0.029 Sum_probs=90.3
Q ss_pred eeEEecCCC-----------CchhHHHHhhhhhhhhhhhhHH-Hhhhcccccc-ccccchhHHHHHHHHHHHHHHHHHHH
Q 042567 3 HLWVIPAGP-----------PLGSALVEKSEVVIRNFFLPFL-FIRIGLLTDI-FSIKDWKAFVSLGMILVAAYLGKVWG 69 (451)
Q Consensus 3 ~gl~~p~~~-----------~~~~~l~~ki~~~~~~~fiPlF-F~~~Gl~~d~-~~l~~~~~~~~~~~~~~~~~~~K~~~ 69 (451)
.|+++|..+ +..++++++++++++.+++|+| |+.+|+++|. ..+.+...-.....+++..++||.+|
T Consensus 236 lGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lG 315 (423)
T PRK14853 236 LGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIG 315 (423)
T ss_pred HHHhcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHH
Confidence 588898421 3467899999999999999999 9999999986 43421101124567888889999999
Q ss_pred HHHHHHHh----------cCCchhHHHHHHHhhhhHHHHHHHHHHHHh-cC-CCChhhHHHHHHHHHHHHHhHHHHHHHh
Q 042567 70 SLLSLIWF----------KTSTRNDLLFGCFLNIKGIIELLVFLRWII-YK-PIDVQTFSTLVLFNLVLTAIVTPLISIF 137 (451)
Q Consensus 70 ~~~~~~~~----------~~~~~~s~~~g~~m~~~G~~~li~~~~~~~-~g-~i~~~~~~~~v~~~~vtt~i~~pl~~~~ 137 (451)
.+..+++. +++|++-..+|++-...=++++-+.+.+++ .. .+++.= -.+++.++++.++.-.+++..
T Consensus 316 I~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GIGFTmSlFI~~LAf~~~~~~~~~aK-igil~~S~~s~~~G~~~l~~~ 394 (423)
T PRK14853 316 IFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFTVSLLIGELAFGGGSARDDAVK-VGVLTGSLIAALLASVLLRLR 394 (423)
T ss_pred HHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 88777764 567888887777655555667777887773 22 233222 233355555545455455543
Q ss_pred c
Q 042567 138 Y 138 (451)
Q Consensus 138 ~ 138 (451)
.
T Consensus 395 ~ 395 (423)
T PRK14853 395 N 395 (423)
T ss_pred c
Confidence 3
No 34
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=98.23 E-value=6.3e-06 Score=82.91 Aligned_cols=108 Identities=9% Similarity=0.054 Sum_probs=73.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhc----
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKG---- 242 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~---- 242 (451)
|||+|+|.|+++..+++.|..+++....+.+++++|+++...... ... .. ....+++++..++..+.
T Consensus 7 kILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~----~~~--~~---~~~~eelle~~~~~~~~~l~~ 77 (357)
T PRK12652 7 RLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP----EGQ--DE---LAAAEELLERVEVWATEDLGD 77 (357)
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc----chh--HH---HHHHHHHHHHHHHHHHHhhhc
Confidence 799999999999999999999995421358999999987432110 110 10 12233444444443322
Q ss_pred CCCceeEeeEEEEc-----CCCCchHhHHHHHHhCCCCEEEEeccC
Q 042567 243 SGAAVKVQPFKMIS-----PYNTMHQSICKLVEDNLIPLVLLPFHE 283 (451)
Q Consensus 243 ~~~~V~v~~~~~vs-----~~~~~~~~I~~~A~e~~~dLIvlg~h~ 283 (451)
...++++++.+... ..+++++.|++.|++.++||||||-.-
T Consensus 78 ~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~ 123 (357)
T PRK12652 78 DASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY 123 (357)
T ss_pred ccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC
Confidence 12477777666542 126999999999999999999999765
No 35
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.17 E-value=2.3e-05 Score=68.36 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=78.3
Q ss_pred eeEEEEec-CCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccC--------------chhhhcHHHHHHHHHhccCC
Q 042567 327 YNVAVFFL-GGPDDREAMALVSRISSHPGMSITIFRIDLLENSVES--------------ENDRCLDDAVTKEFMVGNVG 391 (451)
Q Consensus 327 ~~I~v~f~-Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~--------------~~~~~~~~~~l~e~~~~~~~ 391 (451)
++|++++- |.+..+.|++.+..++...+..++++++..+...... .......++.+++.+.....
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAEA 85 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 68889998 9999999999999999999999998888765322110 00122234555544432211
Q ss_pred CCCeEEEEEEeCChH----HHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCcc
Q 042567 392 NTRVECHEMVANDSK----QLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAKL 448 (451)
Q Consensus 392 ~~~v~y~e~~v~~g~----~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~~ 448 (451)
... ...+..+..|. ++....++. ++|||++|++++. +.++++||.+|.|++|+..
T Consensus 86 ~~~-~~~~~~~~~g~~~~~~i~~~a~~~-~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~ 145 (154)
T COG0589 86 AGV-PVVETEVVEGSPSAEEILELAEEE-DADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPC 145 (154)
T ss_pred cCC-CeeEEEEecCCCcHHHHHHHHHHh-CCCEEEECCCCCccccceeeehhHHHHHhcCCC
Confidence 111 11222333332 222233333 7999999998654 8889999999999999864
No 36
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.14 E-value=2.5e-05 Score=78.27 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=76.7
Q ss_pred eeEEecCCCCch----hHHHHhhhhhhhhhhhhHH-HhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042567 3 HLWVIPAGPPLG----SALVEKSEVVIRNFFLPFL-FIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWF 77 (451)
Q Consensus 3 ~gl~~p~~~~~~----~~l~~ki~~~~~~~fiPlF-F~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~ 77 (451)
.|+++|+..+.. +++++.+++.++.+++|+| |+..|.++|...+.....+ ....+++..++||.+|++..+++.
T Consensus 226 lGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAFanAGv~l~~~~~~~~~~~-v~lgI~lgLvvGK~lGI~~~~~l~ 304 (373)
T TIGR00773 226 IGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAFANAGVSLQGVSLNGLTSM-LPLGIILGLLIGKPLGIFLFSWIA 304 (373)
T ss_pred HeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeeecCcchhhcCh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999875554 3555666666989999999 9999999987655432233 367888899999999999888774
Q ss_pred ----------cCCchhHHHHHHHhhhhHHHHHHHHHHHHh
Q 042567 78 ----------KTSTRNDLLFGCFLNIKGIIELLVFLRWII 107 (451)
Q Consensus 78 ----------~~~~~~s~~~g~~m~~~G~~~li~~~~~~~ 107 (451)
+++|++-..+|++-...=++++-+.+.+++
T Consensus 305 ~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 305 VKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASLAFG 344 (373)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567888877777654444567777777774
No 37
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.52 E-value=0.00044 Score=69.72 Aligned_cols=100 Identities=9% Similarity=0.075 Sum_probs=62.1
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCC--CeEEEEEEEecCCCCccC-chhhhcHHHHHHHHHhccC-----CCCCeEEE
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHP--GMSITIFRIDLLENSVES-ENDRCLDDAVTKEFMVGNV-----GNTRVECH 398 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~--~~~ltvv~v~~~~~~~~~-~~~~~~~~~~l~e~~~~~~-----~~~~v~y~ 398 (451)
+||++|+-|++..+.|+++|..+|+.. +++++++|+.++...... +...+..++.+++.+.... ....+.+.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~ve 85 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTIE 85 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCceE
Confidence 799999999999999999999999884 699999999875322111 1111222333333332110 01234443
Q ss_pred EEEeC---------Ch-HHHHHHHHhcCCCcEEEEcccC
Q 042567 399 EMVAN---------DS-KQLMDAIKKEKDFELVIVDFAE 427 (451)
Q Consensus 399 e~~v~---------~g-~~~~~~i~~~~~~DLiivG~~~ 427 (451)
...+. +. .++++++++. ++||||||..-
T Consensus 86 ~~vv~~~~~~~~~G~pae~Iv~~Aee~-~aDLIVm~~~~ 123 (357)
T PRK12652 86 TALLGTDEYLFGPGDYAEVLIAYAEEH-GIDRVVLDPEY 123 (357)
T ss_pred EEEEeccccccCCCCHHHHHHHHHHHc-CCCEEEECCCC
Confidence 33332 32 3344444444 89999999984
No 38
>PRK10490 sensor protein KdpD; Provisional
Probab=97.37 E-value=0.00064 Score=77.12 Aligned_cols=115 Identities=6% Similarity=0.016 Sum_probs=78.2
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEEEEeCCh-
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHEMVANDS- 405 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~g- 405 (451)
.||+|+..|+|..+..++.+.|||+..++.++++||.+++....+..+++...+.++ +.... +.+ +....-.|-
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~-lA~~l-Ga~---~~~~~~~dva 325 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALR-LAQEL-GAE---TATLSDPAEE 325 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHH-HHHHc-CCE---EEEEeCCCHH
Confidence 789999999999999999999999999999999999876432222222222222222 22222 112 222222222
Q ss_pred HHHHHHHHhcCCCcEEEEcccCCCCcchhhhhhHHHHhhcCcc
Q 042567 406 KQLMDAIKKEKDFELVIVDFAEGHMMSLLVIQSVESIKQGAKL 448 (451)
Q Consensus 406 ~~~~~~i~~~~~~DLiivG~~~~~~~~~~~gs~~e~i~~~~~~ 448 (451)
..+++++++. +.+.||||++++..+ ++.||+++.+++.+.-
T Consensus 326 ~~i~~~A~~~-~vt~IViG~s~~~~~-~~~~s~~~~l~r~~~~ 366 (895)
T PRK10490 326 KAVLRYAREH-NLGKIIIGRRASRRW-WRRESFADRLARLGPD 366 (895)
T ss_pred HHHHHHHHHh-CCCEEEECCCCCCCC-ccCCCHHHHHHHhCCC
Confidence 3455666666 899999999987744 6678999999998864
No 39
>PRK10490 sensor protein KdpD; Provisional
Probab=97.32 E-value=0.0014 Score=74.37 Aligned_cols=124 Identities=11% Similarity=0.150 Sum_probs=88.4
Q ss_pred CcceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcC
Q 042567 164 SELRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGS 243 (451)
Q Consensus 164 ~~~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 243 (451)
...|||||++.+.+.+.+++-+..+|.. .++..+++||... + .... . ....+.+.+.++ ++++.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~--~~a~~~~l~V~~~-~-~~~~----~-------~~~~~~l~~~~~-lA~~l 312 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAAR--LGSVWHAVYVETP-R-LHRL----P-------EKKRRAILSALR-LAQEL 312 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHh--cCCCEEEEEEecC-C-cCcC----C-------HHHHHHHHHHHH-HHHHc
Confidence 4568999999999999999999999965 6688999998532 1 1000 0 223445555553 66654
Q ss_pred CCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCC-ccEEEee
Q 042567 244 GAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAP-CTVGIFV 313 (451)
Q Consensus 244 ~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~ap-c~V~Ilv 313 (451)
++. +. +. ..+++++.|.++|++++++.||||-++...+ . .-||+.+++++.+| .+|-|+-
T Consensus 313 Ga~--~~--~~--~~~dva~~i~~~A~~~~vt~IViG~s~~~~~-~---~~~s~~~~l~r~~~~idi~iv~ 373 (895)
T PRK10490 313 GAE--TA--TL--SDPAEEKAVLRYAREHNLGKIIIGRRASRRW-W---RRESFADRLARLGPDLDLVIVA 373 (895)
T ss_pred CCE--EE--EE--eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC-c---cCCCHHHHHHHhCCCCCEEEEe
Confidence 233 22 21 2489999999999999999999998763222 1 24699999999999 7887764
No 40
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=97.04 E-value=0.0025 Score=69.14 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=81.0
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEEEEeCCh-
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHEMVANDS- 405 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~g- 405 (451)
.||+|+..|++....-++.|.|+|+..+++.|++|+.+|+.....+.+++..++.++=.+ .. +.+.+ ++.++
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae-~l-Gae~~-----~l~~~d 321 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAE-EL-GAEIV-----TLYGGD 321 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHH-Hh-CCeEE-----EEeCCc
Confidence 799999999999999999999999999999999999988765443333333333332111 11 11221 22222
Q ss_pred --HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 406 --KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 406 --~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
..+.+..+.. +..-||+|+++++ +..+|.|++++.+.+++.
T Consensus 322 v~~~i~~ya~~~-~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~ 365 (890)
T COG2205 322 VAKAIARYAREH-NATKIVIGRSRRSRWRRLFKGSLADRLAREAP 365 (890)
T ss_pred HHHHHHHHHHHc-CCeeEEeCCCcchHHHHHhcccHHHHHHhcCC
Confidence 3334555555 8999999999876 889999999999998865
No 41
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=96.27 E-value=0.029 Score=55.02 Aligned_cols=118 Identities=8% Similarity=-0.026 Sum_probs=71.7
Q ss_pred HHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH--HHhhhh
Q 042567 17 LVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFG--CFLNIK 94 (451)
Q Consensus 17 l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g--~~m~~~ 94 (451)
+.+.+++= ..|.+|+|-+..|.++|+..+.+. -+. .+++.++.++.=+..+++..|++|.+.+-++.+| .+-+.-
T Consensus 186 ~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~-G~~-GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIc 262 (312)
T PRK12460 186 MRKFLTKG-GPLLIPFFAFALGAGINLSMLLQA-GLA-GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVA 262 (312)
T ss_pred hHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHh-ChH-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHH
Confidence 33444443 467999999999999999988642 121 2233333344455666667799999988888888 666666
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHH-HHHHHhHHHHHHHhcCc
Q 042567 95 GIIELLVFLRWIIYKPIDVQTFSTLVLFN-LVLTAIVTPLISIFYKP 140 (451)
Q Consensus 95 G~~~li~~~~~~~~g~i~~~~~~~~v~~~-~vtt~i~~pl~~~~~~~ 140 (451)
|...++...=-++. .- +.-+..+..+ ++|.+++|.+..|++|+
T Consensus 263 gpAAVaAadP~~~~--~~-~~Ataqvaa~vivTail~P~~t~~~~k~ 306 (312)
T PRK12460 263 TPLAIAAADPSLAP--VA-AAATAQVAASVIVTAILTPLLTSWVAKK 306 (312)
T ss_pred HHHHHHHhchhHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666554433322 11 2333444444 45555566666676654
No 42
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=95.92 E-value=0.071 Score=53.93 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=67.2
Q ss_pred eEEecCCCCc------hhHHHHhhhhhhhhhhhhHH-HhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042567 4 LWVIPAGPPL------GSALVEKSEVVIRNFFLPFL-FIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIW 76 (451)
Q Consensus 4 gl~~p~~~~~------~~~l~~ki~~~~~~~fiPlF-F~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~ 76 (451)
|+.+|..++. -+++++++++.++-+.+|+| |+..|..++-..+....+ .....+++..++||.+|.++.+++
T Consensus 234 a~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~-pv~~gI~~GLv~GK~lGI~~~s~l 312 (389)
T PRK09560 234 AFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLFAFANAGVSLAGISLSSLTS-PVPLGIALGLFLGKQVGVFGFSWL 312 (389)
T ss_pred HHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHHHhhcCCeeecCCcHHhccC-cHHHHHHHHHHhcchHHHHHHHHH
Confidence 5677754322 35788999999877779999 666787774222221101 234466667778888887777766
Q ss_pred h----------cCCchhHHHHHHHhhhhHHHHHHHHHHHH
Q 042567 77 F----------KTSTRNDLLFGCFLNIKGIIELLVFLRWI 106 (451)
Q Consensus 77 ~----------~~~~~~s~~~g~~m~~~G~~~li~~~~~~ 106 (451)
. |.+|++-..+|++-...=++++-+.+.++
T Consensus 313 ~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF 352 (389)
T PRK09560 313 AVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLFIGSLAF 352 (389)
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4 56788877777765555566777777777
No 43
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=95.78 E-value=0.078 Score=54.43 Aligned_cols=118 Identities=18% Similarity=0.117 Sum_probs=73.2
Q ss_pred hHHHHhhhhhhhhhhhhHH-HhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCchh
Q 042567 15 SALVEKSEVVIRNFFLPFL-FIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWF----------KTSTRN 83 (451)
Q Consensus 15 ~~l~~ki~~~~~~~fiPlF-F~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~ 83 (451)
+++++.+.+.++-+.+|+| |+-.|..++....... -.....+++..++||.+|.++.+++. |++|++
T Consensus 297 ~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~--~pv~lGI~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~ 374 (438)
T PRK14856 297 ERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEV--DKVLLGVILGLCLGKPLGIFLITFISEKLKITARPKGISWWH 374 (438)
T ss_pred HHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhcc--CcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence 4677888888888999999 6778888875432211 12345666677788888877776664 567788
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhc--C-CCChhhHHHHHHHHHHHHHhHHHHHH
Q 042567 84 DLLFGCFLNIKGIIELLVFLRWIIY--K-PIDVQTFSTLVLFNLVLTAIVTPLIS 135 (451)
Q Consensus 84 s~~~g~~m~~~G~~~li~~~~~~~~--g-~i~~~~~~~~v~~~~vtt~i~~pl~~ 135 (451)
-..+|++-...=.+++-+.+.+++. . .+++.- -.+++.++++.++.-.+++
T Consensus 375 l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aK-igIL~gS~lsai~G~~~L~ 428 (438)
T PRK14856 375 ILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAK-IAILLGSLISGIIGALYLF 428 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 7777765444445677777777732 2 333322 2333455554444444444
No 44
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=95.77 E-value=0.065 Score=58.52 Aligned_cols=126 Identities=14% Similarity=0.144 Sum_probs=85.0
Q ss_pred CCcceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhc
Q 042567 163 NSELRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKG 242 (451)
Q Consensus 163 ~~~~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 242 (451)
....|||||++.+.....+++-+..++.. .....+++|+.. ++.... ......-+..-.+++++
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~--~~a~~~av~v~~-~~~~~~-------------~~~~~~~l~~~~~Lae~ 309 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR--LHAKWTAVYVET-PELHRL-------------SEKEARRLHENLRLAEE 309 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH--hCCCeEEEEEec-cccccc-------------cHHHHHHHHHHHHHHHH
Confidence 34469999999999999999999999964 567799999743 322110 11122223333344444
Q ss_pred CCCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCC-ccEEEe
Q 042567 243 SGAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAP-CTVGIF 312 (451)
Q Consensus 243 ~~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~ap-c~V~Il 312 (451)
..+. ..+..+ +++.+.|.++|++.++.-||+|-+....+ ...+.+++.+++++.+| .+|-|+
T Consensus 310 lGae----~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw--~~~~~~~l~~~L~~~~~~idv~ii 372 (890)
T COG2205 310 LGAE----IVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRW--RRLFKGSLADRLAREAPGIDVHIV 372 (890)
T ss_pred hCCe----EEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHH--HHHhcccHHHHHHhcCCCceEEEe
Confidence 3222 223333 89999999999999999999998763332 12245899999999988 565553
No 45
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=95.61 E-value=0.028 Score=44.33 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=57.6
Q ss_pred EEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEEEEeCChHHH
Q 042567 329 VAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHEMVANDSKQL 408 (451)
Q Consensus 329 I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~g~~~ 408 (451)
|++++.||+|+..++.++.+.+ ..+.+++++++. . --...
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~----------------~-----------------------~~~~~ 40 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV----------------A-----------------------FVRIL 40 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH----------------H-----------------------HHHHH
Confidence 4789999999999999999987 446777888774 0 00111
Q ss_pred HHHHHhcCCCcEEEEcccCCC-Ccchhhh-hhHHHHhhcCc
Q 042567 409 MDAIKKEKDFELVIVDFAEGH-MMSLLVI-QSVESIKQGAK 447 (451)
Q Consensus 409 ~~~i~~~~~~DLiivG~~~~~-~~~~~~g-s~~e~i~~~~~ 447 (451)
.+..++. ++|+|+.|.+... ..+.+.| +.++.+..++.
T Consensus 41 ~~~a~~~-~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (86)
T cd01984 41 KRLAAEE-GADVIILGHNADDVAGRRLGASANVLVVIKGAG 80 (86)
T ss_pred HHHHHHc-CCCEEEEcCCchhhhhhccCchhhhhhcccccC
Confidence 2334444 8999999999876 7777777 88888887765
No 46
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=95.47 E-value=0.047 Score=60.09 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=67.4
Q ss_pred hhhhhhhhhhhHHHhhhccccccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhHHHHHHHhhhh
Q 042567 21 SEVVIRNFFLPFLFIRIGLLTDIFSIKD----WKAFVSLGMILVAAYLGKVWGSLLSLIWF--KTSTRNDLLFGCFLNIK 94 (451)
Q Consensus 21 i~~~~~~~fiPlFF~~~Gl~~d~~~l~~----~~~~~~~~~~~~~~~~~K~~~~~~~~~~~--~~~~~~s~~~g~~m~~~ 94 (451)
+..+...++..++|+..|+.+....+.. ...|..+++.+++.++....++++...+. ..+|+|.+.+|. ..+|
T Consensus 292 f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpR 370 (810)
T TIGR00844 292 VSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPI 370 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccc
Confidence 4445557888999999999998766642 12455566666677777877877765554 368999999987 7899
Q ss_pred HHHHHHHHHHHHhcCC
Q 042567 95 GIIELLVFLRWIIYKP 110 (451)
Q Consensus 95 G~~~li~~~~~~~~g~ 110 (451)
|...+..+.++++.+.
T Consensus 371 GIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 371 GVGAVFAAILSKSQLE 386 (810)
T ss_pred cHHHHHHHHHHHHhhh
Confidence 9999999999988876
No 47
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=95.08 E-value=0.22 Score=50.25 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=67.4
Q ss_pred eEEecCCCCc----hhHHHHhhhhhhhhhhhhHH-Hhhhccccc-cc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042567 4 LWVIPAGPPL----GSALVEKSEVVIRNFFLPFL-FIRIGLLTD-IF--SIKDWKAFVSLGMILVAAYLGKVWGSLLSLI 75 (451)
Q Consensus 4 gl~~p~~~~~----~~~l~~ki~~~~~~~fiPlF-F~~~Gl~~d-~~--~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~ 75 (451)
|+.+|...+- .+++++++++.++-+.+|+| |+-.|..++ .. .+.++ ....+++..++||.+|.+..++
T Consensus 231 a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~aNAGV~l~~~~~~~~~~p----v~~GI~~GL~~GK~lGI~~~s~ 306 (383)
T PRK14854 231 ALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAFANAGISFSGISFSILFEP----ITLGIILGLFVGKQLGIFSILA 306 (383)
T ss_pred HHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHhhcCCeeeccCcHHhhcCc----HHHHHHHHHHhcchHHHHHHHH
Confidence 5677763221 25788889999999999999 666787773 22 22222 3446666777888888777666
Q ss_pred Hh----------cCCchhHHHHHHHhhhhHHHHHHHHHHHHh
Q 042567 76 WF----------KTSTRNDLLFGCFLNIKGIIELLVFLRWII 107 (451)
Q Consensus 76 ~~----------~~~~~~s~~~g~~m~~~G~~~li~~~~~~~ 107 (451)
+. +++|++-..+|++-...=++++-+.+.+++
T Consensus 307 lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 348 (383)
T PRK14854 307 VFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVLAFN 348 (383)
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 64 567888877777655444667777777774
No 48
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=94.99 E-value=0.07 Score=41.98 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=38.5
Q ss_pred CchHhHHHHHHhCCCCEEEEeccCCCcccccchhhh-HHHHHHhhcCCccEE
Q 042567 260 TMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQ-NFNKNVLSYAPCTVG 310 (451)
Q Consensus 260 ~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~g-s~~~~Vl~~apc~V~ 310 (451)
.+++.+.+.|++.++|+|++|.|++...+. ...+ ++..++.+.++|||.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~--~~~~~~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGR--RLGASANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhh--ccCchhhhhhcccccCCcee
Confidence 667888899999999999999998443322 2344 788899999999964
No 49
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=94.71 E-value=0.33 Score=49.17 Aligned_cols=100 Identities=15% Similarity=0.129 Sum_probs=66.6
Q ss_pred eEEecCCCCc----hhHHHHhhhhhhhhhhhhHH-Hhhhcccc-ccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042567 4 LWVIPAGPPL----GSALVEKSEVVIRNFFLPFL-FIRIGLLT-DIF--SIKDWKAFVSLGMILVAAYLGKVWGSLLSLI 75 (451)
Q Consensus 4 gl~~p~~~~~----~~~l~~ki~~~~~~~fiPlF-F~~~Gl~~-d~~--~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~ 75 (451)
|+.+|...+. -+++++++++.++-+.+|+| |+-.|..+ +.. .+.++ ....+++..++||.+|.+..++
T Consensus 234 a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAfaNAGV~l~~~~~~~~~~p----v~lgV~~GL~~GK~lGI~~~~~ 309 (388)
T PRK09561 234 GFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAFANAGVSLQGVTLDGLTSP----LPLGIALGLFIGKPLGIFLFSW 309 (388)
T ss_pred HhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHhhcCCeeeccCcHHhhcCc----HHHHHHHHHHhcchHHHHHHHH
Confidence 5677764222 35788999999988899998 56677777 322 22222 3446666777888888777766
Q ss_pred Hh----------cCCchhHHHHHHHhhhhHHHHHHHHHHHHh
Q 042567 76 WF----------KTSTRNDLLFGCFLNIKGIIELLVFLRWII 107 (451)
Q Consensus 76 ~~----------~~~~~~s~~~g~~m~~~G~~~li~~~~~~~ 107 (451)
+. +++|++-..+|++-...=++++-+.+.+++
T Consensus 310 l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 310 LAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASLAFG 351 (388)
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 64 567788777776544444567767777774
No 50
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=93.51 E-value=0.2 Score=49.90 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=75.8
Q ss_pred hhhhhhhhHHHhhhcccccccccc-chhHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHH
Q 042567 24 VIRNFFLPFLFIRIGLLTDIFSIK-DWKAFVSLGMI-LVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLV 101 (451)
Q Consensus 24 ~~~~~fiPlFF~~~Gl~~d~~~l~-~~~~~~~~~~~-~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~ 101 (451)
+.+++|=|+-|..+|..+|+..+. ++.. .++ -..+=+|- ..+++.+.++|++.+|+-++|..=..-|-..+-+
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP~~----~ll~gaaAQ~Gi-F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~ 176 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARPWA----SITVALFAEMGT-FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFA 176 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhChHH----HHHHHHHHHhhH-HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHH
Confidence 556899999999999999998776 3322 122 22333333 3455667788999999999999988888888876
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCcccc
Q 042567 102 FLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRKR 143 (451)
Q Consensus 102 ~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~~ 143 (451)
.+..- -.++.+-.-++..-|+++ =++-||+.|.+-.+++|
T Consensus 177 s~kLA-p~Llg~IaVAAYsYMaLV-PiiqPpimklLttkkER 216 (399)
T TIGR03136 177 SLILA-KDLFVPISIIAYLYLSLT-YAGYPYLIKLLVPKKYR 216 (399)
T ss_pred HHhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhhcCHHHH
Confidence 55433 234444333333344555 57789999997654433
No 51
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=93.50 E-value=1.2 Score=45.79 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=62.1
Q ss_pred hHHHHhhhhhhhhhhhhHH-HhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCchh
Q 042567 15 SALVEKSEVVIRNFFLPFL-FIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWF----------KTSTRN 83 (451)
Q Consensus 15 ~~l~~ki~~~~~~~fiPlF-F~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~ 83 (451)
+++++.+++.++-+.+|+| |+-.|..++-.. ..+ ....+++..++||.+|.++.+++. +++|++
T Consensus 285 ~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~p----v~lGI~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~ 359 (423)
T PRK14855 285 HRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LGT----VSLGVFLGLLLGKPLGVVGGAWLAVRLGLASLPRRVNWLH 359 (423)
T ss_pred HHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CCc----HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence 5688889999888899999 666788884333 222 344566667788888877776664 567888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHh
Q 042567 84 DLLFGCFLNIKGIIELLVFLRWII 107 (451)
Q Consensus 84 s~~~g~~m~~~G~~~li~~~~~~~ 107 (451)
-..+|++-...=++++-+.+.+++
T Consensus 360 l~gv~~LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 360 MLGAGLLAGIGFTMSLFISNLAFA 383 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 877777655545667777777774
No 52
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=92.62 E-value=2.6 Score=40.76 Aligned_cols=94 Identities=16% Similarity=0.034 Sum_probs=61.0
Q ss_pred hhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHH
Q 042567 21 SEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGK-VWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIEL 99 (451)
Q Consensus 21 i~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K-~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~l 99 (451)
++.+ ..+-+.++....|+++|++.+.+ .+.....+.+..++.= ++.++..++++++++.+++.+|..+++-. .-
T Consensus 43 ~~~l-~~igl~~llF~~Gl~~d~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~ 117 (273)
T TIGR00932 43 VNHL-AEFGVILLMFLIGLELDLERLWK--LRKAAFGVGVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TA 117 (273)
T ss_pred HHHH-HHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HH
Confidence 4555 35667788899999999998864 2222222223333333 44455677888999999999999988653 23
Q ss_pred HHHHHHHhcCCCChhhHHHH
Q 042567 100 LVFLRWIIYKPIDVQTFSTL 119 (451)
Q Consensus 100 i~~~~~~~~g~i~~~~~~~~ 119 (451)
+++.+..+.++++.+.-..+
T Consensus 118 v~~~il~~~~~~~~~~g~l~ 137 (273)
T TIGR00932 118 VVVQVLKERGLLKTPFGQTV 137 (273)
T ss_pred HHHHHHHHcCcccChHHHHH
Confidence 44566677777765544333
No 53
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=92.56 E-value=0.17 Score=49.82 Aligned_cols=114 Identities=18% Similarity=0.314 Sum_probs=75.6
Q ss_pred hhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHH
Q 042567 24 VIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFL 103 (451)
Q Consensus 24 ~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~ 103 (451)
+.+++|=|+-|..+|..+|+..+... .+. +++-..+=+| +..+++.+.++|++.+|+-++|..=..-|-..+-+.+
T Consensus 66 i~~~l~P~LIF~GIGAmtDFgpllan-P~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~ 141 (360)
T PF03977_consen 66 ISNGLFPPLIFMGIGAMTDFGPLLAN-PKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS 141 (360)
T ss_pred hhcchhhHHHHHHHhHHHhhHHHHhC-HHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence 34688999999999999999877631 222 2222223333 3456777788899999999999998888888876655
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCcccc
Q 042567 104 RWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRKR 143 (451)
Q Consensus 104 ~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~~ 143 (451)
..- -.++.+-.-++..-|+++ =++-||+.|.+-.+++|
T Consensus 142 ~LA-p~LlgpIaVaAYsYMaLv-PiiqPpimklLttkkeR 179 (360)
T PF03977_consen 142 KLA-PHLLGPIAVAAYSYMALV-PIIQPPIMKLLTTKKER 179 (360)
T ss_pred hhh-HHHHHHHHHHHHHHHHHH-hhhhhHHHHHhcCHHHH
Confidence 432 233333333333344555 57789999997654433
No 54
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=92.53 E-value=0.23 Score=53.48 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=52.6
Q ss_pred hhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCchhHHHHHHHhhhhHH
Q 042567 23 VVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWF------KTSTRNDLLFGCFLNIKGI 96 (451)
Q Consensus 23 ~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~------~~~~~~s~~~g~~m~~~G~ 96 (451)
.....+.-.+.|+..|+.+-... ..+ .|.++++.+++.++.+.++.++.++.. +++++|.+.++. ...||.
T Consensus 293 ~~ls~l~e~~IFvlLGl~l~~~~-~~~-~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGa 369 (559)
T TIGR00840 293 KMLSSLSETLIFIFLGVSLVTEN-HEW-NWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGA 369 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhcch-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccH
Confidence 33356778899999999762211 112 345555555666778888877665442 478899987765 345999
Q ss_pred HHHHHHHHH
Q 042567 97 IELLVFLRW 105 (451)
Q Consensus 97 ~~li~~~~~ 105 (451)
+.++++...
T Consensus 370 Va~aLAl~l 378 (559)
T TIGR00840 370 VAFALALLL 378 (559)
T ss_pred HHHHHHHhC
Confidence 999877543
No 55
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.15 E-value=1.9 Score=47.15 Aligned_cols=89 Identities=13% Similarity=-0.073 Sum_probs=55.2
Q ss_pred HhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHH
Q 042567 19 EKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIE 98 (451)
Q Consensus 19 ~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~ 98 (451)
+.++.+ ..+-+.++...+|+.+|+..++.. ...++.+-.+-++.=++..+..++++|++|..++.+|+.++.--. .
T Consensus 54 ~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~--~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt-a 129 (621)
T PRK03562 54 ESILHF-AEFGVVLMLFVIGLELDPQRLWKL--RRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST-A 129 (621)
T ss_pred HHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-H
Confidence 345665 478888999999999999988642 111122222222222334445667889999999999988765433 2
Q ss_pred HHHHHHHHhcCCCC
Q 042567 99 LLVFLRWIIYKPID 112 (451)
Q Consensus 99 li~~~~~~~~g~i~ 112 (451)
+ ++.+-.+.|+++
T Consensus 130 i-v~~~L~e~~~l~ 142 (621)
T PRK03562 130 I-AMQAMNERNLMV 142 (621)
T ss_pred H-HHHHHHHhcccc
Confidence 2 355555666554
No 56
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=92.08 E-value=0.19 Score=49.99 Aligned_cols=113 Identities=13% Similarity=0.166 Sum_probs=71.1
Q ss_pred hhhhhhhhHHHhhhcccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCchhHHHHHHHhhhhHH
Q 042567 24 VIRNFFLPFLFIRIGLLTDIFSIK-DWKAFVSLGMILVAAYLGKVWGSLLSLIW------FKTSTRNDLLFGCFLNIKGI 96 (451)
Q Consensus 24 ~~~~~fiPlFF~~~Gl~~d~~~l~-~~~~~~~~~~~~~~~~~~K~~~~~~~~~~------~~~~~~~s~~~g~~m~~~G~ 96 (451)
+.+++|=|+-|..+|..+|+.-+. ++.. +++=..+=+|-|. +++.+.+ +|++.+|+-++|.+=..-|-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~----~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRT----LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHH----HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 456889999999999999998776 3322 2222233333332 2233333 38999999999998888888
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCcccc
Q 042567 97 IELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRKR 143 (451)
Q Consensus 97 ~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~~ 143 (451)
..+-+.+..- -.++.+-.-+..--|+++ =++-||+.|.+-.+++|
T Consensus 206 TsIfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER 250 (433)
T PRK15475 206 TAIYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTETER 250 (433)
T ss_pred hHHHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHh
Confidence 8876655432 234433333333344555 57789999997644433
No 57
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=91.97 E-value=0.2 Score=49.86 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=70.6
Q ss_pred hhhhhhhhHHHhhhcccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCchhHHHHHHHhhhhHH
Q 042567 24 VIRNFFLPFLFIRIGLLTDIFSIK-DWKAFVSLGMILVAAYLGKVWGSLLSLIW------FKTSTRNDLLFGCFLNIKGI 96 (451)
Q Consensus 24 ~~~~~fiPlFF~~~Gl~~d~~~l~-~~~~~~~~~~~~~~~~~~K~~~~~~~~~~------~~~~~~~s~~~g~~m~~~G~ 96 (451)
+.+++|=|+-|..+|..+|+.-+. ++.. +++=..+=+|-|. +++.+.+ +|++.+|+-++|.+=..-|-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~----~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRT----LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHH----HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 456889999999999999998776 3322 2222233333332 2233333 38999999999998888888
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCccc
Q 042567 97 IELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRK 142 (451)
Q Consensus 97 ~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~ 142 (451)
..+-+.+..- -.++.+-.-+..--|+++ =++-||+.|.+-.+++
T Consensus 206 TsIfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkE 249 (433)
T PRK15476 206 TAIYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKE 249 (433)
T ss_pred hHHHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHH
Confidence 8876655432 234433333333344555 5778999998754433
No 58
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=91.96 E-value=0.2 Score=49.86 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=70.5
Q ss_pred hhhhhhhhHHHhhhcccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCchhHHHHHHHhhhhHH
Q 042567 24 VIRNFFLPFLFIRIGLLTDIFSIK-DWKAFVSLGMILVAAYLGKVWGSLLSLIW------FKTSTRNDLLFGCFLNIKGI 96 (451)
Q Consensus 24 ~~~~~fiPlFF~~~Gl~~d~~~l~-~~~~~~~~~~~~~~~~~~K~~~~~~~~~~------~~~~~~~s~~~g~~m~~~G~ 96 (451)
+.+++|=|+-|..+|..+|+.-+. ++.. +++=..+=+|-|. +++.+.+ +|++.+|+-++|.+=..-|-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~----~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRT----LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHH----HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 456888999999999999998776 3322 2222233333332 2233333 38999999999998888888
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCccc
Q 042567 97 IELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRK 142 (451)
Q Consensus 97 ~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~ 142 (451)
..+-+.+..- -.++.+-.-+..--|+++ =++-||+.|.+-.+++
T Consensus 206 TsIfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkE 249 (433)
T PRK15477 206 TAIYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKE 249 (433)
T ss_pred hHHHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHH
Confidence 8876655432 234433333333344555 5778999998754433
No 59
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=91.79 E-value=1.9 Score=42.47 Aligned_cols=101 Identities=17% Similarity=0.122 Sum_probs=64.9
Q ss_pred eEEecCCCCc----hhHHHHhhhhhhhhhhhhHH-Hhhhccccc---cccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042567 4 LWVIPAGPPL----GSALVEKSEVVIRNFFLPFL-FIRIGLLTD---IFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLI 75 (451)
Q Consensus 4 gl~~p~~~~~----~~~l~~ki~~~~~~~fiPlF-F~~~Gl~~d---~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~ 75 (451)
|+.+|-...- -+++++-+.+.+.-+.+|+| |.-.|..++ +..+.+ .+.+.+++..++||-+|.+..++
T Consensus 237 ~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~ 312 (390)
T COG3004 237 AFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVSLQGVSLSGLTS----PLTLGIILGLFLGKPLGIFLFSW 312 (390)
T ss_pred HeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCccccccccccccc----chHHHHHHHHHhcCcchhhhhHH
Confidence 5677743333 34777788888877888998 667787776 444443 23456777788899888777766
Q ss_pred Hh----------cCCchhHHHHHHHhhhhHHHHHHHHHHHHhc
Q 042567 76 WF----------KTSTRNDLLFGCFLNIKGIIELLVFLRWIIY 108 (451)
Q Consensus 76 ~~----------~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~ 108 (451)
.. |.+|++-..++++-...=.+++-+...+++.
T Consensus 313 lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 313 LAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred HHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 53 5577777666665433334566555555543
No 60
>TIGR00930 2a30 K-Cl cotransporter.
Probab=91.31 E-value=33 Score=39.61 Aligned_cols=98 Identities=5% Similarity=0.028 Sum_probs=62.5
Q ss_pred cceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCC
Q 042567 165 ELRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSG 244 (451)
Q Consensus 165 ~~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 244 (451)
..+||+.+.+|.+.+.+++++..+++. . .-..+-|+++-+.. .. ..+.++..+..+.+-+.
T Consensus 575 rPqiLvl~~~p~~~~~Ll~f~~~l~~~--~-gl~i~~~v~~~~~~-------~~-------~~~~~~~~~~~~~~~~~-- 635 (953)
T TIGR00930 575 RPQCLVLTGPPVCRPALLDFASQFTKG--K-GLMICGSVIQGPRL-------EC-------VKEAQAAEAKIQTWLEK-- 635 (953)
T ss_pred CCeEEEEeCCCcCcHHHHHHHHHhccC--C-cEEEEEEEecCchh-------hh-------HHHHHHHHHHHHHHHHH--
Confidence 468999999999999999999999943 2 34566688764321 00 11122223333333222
Q ss_pred CceeEeeEEEEcCCCCchHhHHHHHHh-----CCCCEEEEeccC
Q 042567 245 AAVKVQPFKMISPYNTMHQSICKLVED-----NLIPLVLLPFHE 283 (451)
Q Consensus 245 ~~V~v~~~~~vs~~~~~~~~I~~~A~e-----~~~dLIvlg~h~ 283 (451)
.++ +.+..+....++.+++-.+.+- -+.+.++|||..
T Consensus 636 ~~~--~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 677 (953)
T TIGR00930 636 NKV--KAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKK 677 (953)
T ss_pred hCC--CeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCcc
Confidence 122 2333333347889999888875 578999999975
No 61
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=91.24 E-value=1.6 Score=45.50 Aligned_cols=117 Identities=20% Similarity=0.171 Sum_probs=80.2
Q ss_pred hhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCchhHHHHHHHhhhh
Q 042567 21 SEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFK------TSTRNDLLFGCFLNIK 94 (451)
Q Consensus 21 i~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~------~~~~~s~~~g~~m~~~ 94 (451)
+.....-++--+.|+..|++++...+... .++.++++++..++.+.++.++..+... .++++.+.++. -..|
T Consensus 279 fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~R 356 (429)
T COG0025 279 FWEVLDFLLNGLLFVLLGAQLPLSLLLAL-GLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPR 356 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccc
Confidence 44444567788899999999999887642 3566778888899999999999988743 68888877765 5799
Q ss_pred HHHHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHhHHHHHHHhcC
Q 042567 95 GIIELLVFLRWIIYK------PIDVQTFSTLVLFNLVLTAIVTPLISIFYK 139 (451)
Q Consensus 95 G~~~li~~~~~~~~g------~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~ 139 (451)
|.+.++++..-.... ++-.-.|..++..+++.++..||+.++...
T Consensus 357 G~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 357 GVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQGLTLPPLAKKLEV 407 (429)
T ss_pred cHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Confidence 999998876554221 111223344444444445556666666543
No 62
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=90.73 E-value=0.029 Score=56.54 Aligned_cols=104 Identities=20% Similarity=0.120 Sum_probs=63.2
Q ss_pred eEEecCCCCch--------hHHHHhhhhhhhhhhhhHH-HhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042567 4 LWVIPAGPPLG--------SALVEKSEVVIRNFFLPFL-FIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSL 74 (451)
Q Consensus 4 gl~~p~~~~~~--------~~l~~ki~~~~~~~fiPlF-F~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~ 74 (451)
|+.+|..++.+ +++++++++.++-+.+|+| |+..|..++-..+... .-.....+++..++||.+|.+..+
T Consensus 230 al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~ 308 (378)
T PF06965_consen 230 ALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFS 308 (378)
T ss_dssp HHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTT
T ss_pred heeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHH
Confidence 45667654443 4888999999988889998 7788888886655422 222344566777889988877766
Q ss_pred HHh----------cCCchhHHHHHHHhhhhHHHHHHHHHHHHhc
Q 042567 75 IWF----------KTSTRNDLLFGCFLNIKGIIELLVFLRWIIY 108 (451)
Q Consensus 75 ~~~----------~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~ 108 (451)
++. +++|++-..+|++-...=++++-+.+.+++.
T Consensus 309 ~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 309 WLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLFIAGLAFDD 352 (378)
T ss_dssp TTTSS-TTT----S--GGGGTTHHHHTT--HHHHHHHHHHHSTT
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 553 5677877777776555556677777877775
No 63
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=90.69 E-value=0.087 Score=50.60 Aligned_cols=113 Identities=14% Similarity=0.271 Sum_probs=71.2
Q ss_pred hhhhhhhhHHHhhhcccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHH
Q 042567 24 VIRNFFLPFLFIRIGLLTDIFSIK-DWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVF 102 (451)
Q Consensus 24 ~~~~~fiPlFF~~~Gl~~d~~~l~-~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~ 102 (451)
+.+++|=++.|..+|..+|+.-+. ++.+++ +=..+-+| +..+++.+...|+..+|+-++|.+=..-|-..+.+.
T Consensus 81 i~~~i~PllIFmGvGAmTDFgpllanPktll----LGaAAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t 155 (375)
T COG1883 81 IGSGIFPLLIFMGVGAMTDFGPLLANPKTLL----LGAAAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLT 155 (375)
T ss_pred hccCcccHHHHhccchhcccchhhcCcHHHH----hhhHHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEec
Confidence 456899999999999999998775 443332 11222222 234566677889999999999988777777766544
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCcccc
Q 042567 103 LRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRKR 143 (451)
Q Consensus 103 ~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~~ 143 (451)
+.. .-.++..-..+..--|+++ -+|-||+.+.+-.+++|
T Consensus 156 ~~L-AP~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~ER 194 (375)
T COG1883 156 NKL-APELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEER 194 (375)
T ss_pred ccc-CHHHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHHH
Confidence 321 1112222222222234555 57889999998665544
No 64
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=90.29 E-value=2.1 Score=41.93 Aligned_cols=121 Identities=13% Similarity=0.007 Sum_probs=58.4
Q ss_pred hHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhh
Q 042567 15 SALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIK 94 (451)
Q Consensus 15 ~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~ 94 (451)
+.+.+-+.+- ....+|+|-...|..+|+..+.+.-..+.++.+.+ ++.-....++.-|+.+ .++..+-...-++-
T Consensus 189 ~~~r~fl~~~-~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v--~~vtG~~~~~~dr~~~--g~~g~aG~A~sstA 263 (314)
T TIGR00793 189 PELRDFFSKA-VQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSV--IILTGIPLILADKFIG--GGDGTAGIAASSSA 263 (314)
T ss_pred HHHHHHhccC-CCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHH--HHHHhHHHHHHHHHhc--CCCCchhhHHHHHH
Confidence 3444444443 47889999999999999988864222232222222 2223344566666663 23322222222344
Q ss_pred HHHHHHHHHHHHhcCCCC--hhhHHHHHHHH-HHHHHhHHHHHHHhcCc
Q 042567 95 GIIELLVFLRWIIYKPID--VQTFSTLVLFN-LVLTAIVTPLISIFYKP 140 (451)
Q Consensus 95 G~~~li~~~~~~~~g~i~--~~~~~~~v~~~-~vtt~i~~pl~~~~~~~ 140 (451)
|..-..=+.++...--+. .+.-+..+..+ ++|.+++|.+..|++|+
T Consensus 264 GnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~kr 312 (314)
T TIGR00793 264 GAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWSKK 312 (314)
T ss_pred HHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444222222222211111 12233434444 44445556666666654
No 65
>PRK05326 potassium/proton antiporter; Reviewed
Probab=89.65 E-value=2.1 Score=46.19 Aligned_cols=90 Identities=17% Similarity=0.086 Sum_probs=58.0
Q ss_pred hhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHH
Q 042567 21 SEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLG-KVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIEL 99 (451)
Q Consensus 21 i~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~-K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~l 99 (451)
.+.+ ..+.+++.....|+++|++.+.. .+...+.+..+.++. =++.++++.++++++|.+++.+|..+++-....
T Consensus 59 ~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~- 134 (562)
T PRK05326 59 AYLV-GNLALAVILFDGGLRTRWSSFRP--ALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAA- 134 (562)
T ss_pred HHHH-HHHHHHHHHHcCccCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHH-
Confidence 3444 58889999999999999998863 333333333333332 333355666778999999999999887765443
Q ss_pred HHHHHHHhcCC-CChhh
Q 042567 100 LVFLRWIIYKP-IDVQT 115 (451)
Q Consensus 100 i~~~~~~~~g~-i~~~~ 115 (451)
+..+..+.|+ ++++.
T Consensus 135 -v~~iL~~~~l~l~~~v 150 (562)
T PRK05326 135 -VFSLLRGKGLNLKERV 150 (562)
T ss_pred -HHHHHhccCCCcchhH
Confidence 3344555663 44443
No 66
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.58 E-value=4.8 Score=43.41 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=57.3
Q ss_pred hhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHH
Q 042567 21 SEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELL 100 (451)
Q Consensus 21 i~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li 100 (451)
++.+ ..+=+-++...+|+++|++.+.... .......+..++.=++.+++.++++++++.+++.+|..++.-.. .+
T Consensus 57 ~~~l-a~lGli~llF~~Gle~d~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~v 131 (558)
T PRK10669 57 APEL-AELGVILLMFGVGLHFSLKDLMAVK--SIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VV 131 (558)
T ss_pred HHHH-HHHHHHHHHHHhHhcCCHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HH
Confidence 4444 3666777788889999998875321 11111122222223344455667789999999999988777333 45
Q ss_pred HHHHHHhcCCCChhh
Q 042567 101 VFLRWIIYKPIDVQT 115 (451)
Q Consensus 101 ~~~~~~~~g~i~~~~ 115 (451)
++.+..+.|.++.+.
T Consensus 132 v~~~L~e~~~l~s~~ 146 (558)
T PRK10669 132 LLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHhcCcccCcc
Confidence 667777888877644
No 67
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=89.15 E-value=20 Score=33.83 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=49.7
Q ss_pred EeeEEEEcCCC-CchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecC
Q 042567 249 VQPFKMISPYN-TMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDR 315 (451)
Q Consensus 249 v~~~~~vs~~~-~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr 315 (451)
..+++.++|.. ....+|.+.+.+.+.|.|++|-. +|. +......+.+++-++...||.++...
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS-~gv---t~~~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGS-DGV---TEENVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEECCc-ccc---cHHHHHHHHHHHHhhcCCCEEEecCC
Confidence 45689999999 88999999999999999999954 343 22356677888877999998776544
No 68
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=88.85 E-value=4.1 Score=36.93 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=33.7
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
||++.+.||.|+.-++.++.+.++..+.+++++++...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g 38 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHG 38 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 58899999999999999999998888888999998643
No 69
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=88.58 E-value=1.8 Score=42.54 Aligned_cols=120 Identities=12% Similarity=-0.018 Sum_probs=57.4
Q ss_pred hHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHh-hh
Q 042567 15 SALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFL-NI 93 (451)
Q Consensus 15 ~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m-~~ 93 (451)
+.+.+-+.+ +...++|+|-...|..+|+..+.+.-..+.++.++... .-....++.-|+.. .++... |..+ ++
T Consensus 189 ~~~r~fl~~-~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~--vtg~~~~~~dr~i~--~~~g~a-G~A~sst 262 (314)
T PF03812_consen 189 PDFRKFLAP-GVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVV--VTGIPLYLADRLIL--KGNGVA-GAAISST 262 (314)
T ss_pred HHHHHHHhc-CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHH--HHhHHHHHHHHHHc--CCCCce-eehHHhh
Confidence 344444444 35889999999999999999887432223322222221 22233455566542 233322 2222 23
Q ss_pred hHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHHHhHHHHHHHhcCc
Q 042567 94 KGIIELLVFLRWIIYKPI---DVQTFSTLVLFNLVLTAIVTPLISIFYKP 140 (451)
Q Consensus 94 ~G~~~li~~~~~~~~g~i---~~~~~~~~v~~~~vtt~i~~pl~~~~~~~ 140 (451)
-|..--.=+.++....-+ -+..-+.+-..+++|++++|.+..|++|+
T Consensus 263 AGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~kr 312 (314)
T PF03812_consen 263 AGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWWAKR 312 (314)
T ss_pred hhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332222212222211111 11222233344556666667777776654
No 70
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.52 E-value=6.5 Score=42.85 Aligned_cols=89 Identities=12% Similarity=-0.081 Sum_probs=49.8
Q ss_pred hhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHH
Q 042567 20 KSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIEL 99 (451)
Q Consensus 20 ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~l 99 (451)
.++.+ ..+=+.++...+|+.+|++.++......+ .+....++.=++..+..++++|++|..++.+|+.++.- ...+
T Consensus 55 ~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~~~~--~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~S-STai 130 (601)
T PRK03659 55 EILHF-SELGVVFLMFIIGLELNPSKLWQLRRSIF--GVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMS-STAM 130 (601)
T ss_pred HHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-HHHH
Confidence 35555 36777788888999999998864222211 11111111112222334556799999999988766542 2222
Q ss_pred HHHHHHHhcCCCCh
Q 042567 100 LVFLRWIIYKPIDV 113 (451)
Q Consensus 100 i~~~~~~~~g~i~~ 113 (451)
+ ..+-.+.|.++.
T Consensus 131 v-~~iL~e~~~~~t 143 (601)
T PRK03659 131 A-LQLMREKGMNRS 143 (601)
T ss_pred H-HHHHHHcccccC
Confidence 2 444555555443
No 71
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=87.04 E-value=7.1 Score=39.79 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=68.2
Q ss_pred hhhhhhHHHhhhccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH-Hhh-hhHHHHHHHH
Q 042567 26 RNFFLPFLFIRIGLLTDIFSIKDW-KAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGC-FLN-IKGIIELLVF 102 (451)
Q Consensus 26 ~~~fiPlFF~~~Gl~~d~~~l~~~-~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~-~m~-~~G~~~li~~ 102 (451)
.++|+=.||+.+|+..+++.+.+. ........+.....+...+.+...+.++++++.-.+..|. .+. ..|.. -+..
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTA-aa~g 144 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTA-AAFG 144 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHH-HHHH
Confidence 467888999999999999877532 2222222333334455666666677888998877765542 222 22322 2333
Q ss_pred HHHHhc-CCCChhhHHHH--HHHHHHHHHhHHHHHHHhcCccc
Q 042567 103 LRWIIY-KPIDVQTFSTL--VLFNLVLTAIVTPLISIFYKPRK 142 (451)
Q Consensus 103 ~~~~~~-g~i~~~~~~~~--v~~~~vtt~i~~pl~~~~~~~~~ 142 (451)
...-+. |.-+.....+- .+..+.-+++..|+.+|+.|+.+
T Consensus 145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344444 66544443332 23334456788999999876543
No 72
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=86.70 E-value=2.2 Score=42.64 Aligned_cols=114 Identities=11% Similarity=-0.073 Sum_probs=57.6
Q ss_pred hhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---hHHHHHHHhhhhHHHHHH
Q 042567 24 VIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTR---NDLLFGCFLNIKGIIELL 100 (451)
Q Consensus 24 ~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~---~s~~~g~~m~~~G~~~li 100 (451)
-+-.+++|++-...|.++|+..+.....-+.++. +..++......+...|+++.... -+...+.+-+.-|...++
T Consensus 199 ~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~--~~~~~~t~~~~~~~~Rl~~~~~g~~g~a~~ttaG~aic~pAAva 276 (326)
T PRK05274 199 KAVPVLIPFFAFALGNGIDLGTIITAGLSGILLG--VAVVAVTGIPLYLADRLIGGGNGVAGAAAGSTAGNAVATPAAVA 276 (326)
T ss_pred CCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhh--hhHhhccchhhHhHhheeecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 4457799999999999999988753211122211 22223344445556688854333 333333333333433433
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCcc
Q 042567 101 VFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPR 141 (451)
Q Consensus 101 ~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~ 141 (451)
...-.+. -..++.-..+-..+++++++.|.+..|++|+.
T Consensus 277 a~~p~~~--~~~~~at~~VA~~vivt~il~P~l~~~~~k~~ 315 (326)
T PRK05274 277 AADPSFA--PFAPAATAQVAAAVIVTAILAPILTAWWSKRV 315 (326)
T ss_pred hhccccc--cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3332222 22333323233344455566666666666543
No 73
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=86.42 E-value=0.63 Score=45.75 Aligned_cols=112 Identities=14% Similarity=0.210 Sum_probs=72.4
Q ss_pred hhhhhhhhHHHhhhcccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CchhHHHHHHHhhhhHH
Q 042567 24 VIRNFFLPFLFIRIGLLTDIFSIK-DWKAFVSLGMILVAAYLGKVWGSLLSLIWFKT------STRNDLLFGCFLNIKGI 96 (451)
Q Consensus 24 ~~~~~fiPlFF~~~Gl~~d~~~l~-~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~------~~~~s~~~g~~m~~~G~ 96 (451)
+.+++|=|+-|..+|..+|+..+. ++. .+++-..+=+| +..+++.+.++|+ +.+|+-++|..=..-|-
T Consensus 60 i~~~l~P~LIFlGIGAmtDFgpllanP~----~~llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 60 IGSGIAPLLIFMGIGALTDFGPLLANPR----TLLLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HhcchHHHHHHHhccHHhhhHHHHhChH----HHHHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 556899999999999999998776 332 22222333333 3345667777788 66999999998888888
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCccc
Q 042567 97 IELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRK 142 (451)
Q Consensus 97 ~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~ 142 (451)
..+-+.+..- -.++.+-.-++..-|+++ =++-||+.|.+-.+++
T Consensus 135 t~If~s~~la-p~Llg~IaVAAYsYMaLv-PiiqPpimklLttkke 178 (354)
T TIGR01109 135 TAIYLSGKLA-PELLAAIAVAAYSYMALV-PIIQPPIMKALTSEKE 178 (354)
T ss_pred hhhhhHhhhh-hHHHHHHHHHHHHHHHHH-hcccchHHHhhcChHH
Confidence 8776654332 223333333333344555 5778999999764443
No 74
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=85.60 E-value=4.7 Score=39.94 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=73.8
Q ss_pred hHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhh
Q 042567 15 SALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIK 94 (451)
Q Consensus 15 ~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~ 94 (451)
+....-++.. ...++++=-+..|.++++..+.+- .|.-++..++..+++=+++.++..|++|++.+.+..+|.+.+.=
T Consensus 48 ~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~-G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsIC 125 (305)
T PF03601_consen 48 ARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL-GWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSIC 125 (305)
T ss_pred HHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-CccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 3444444433 468899999999999999988642 22222233333333334444455599999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCChhh--HHHHHHHHHHHHHhHHHHHHHhcCc
Q 042567 95 GIIELLVFLRWIIYKPIDVQT--FSTLVLFNLVLTAIVTPLISIFYKP 140 (451)
Q Consensus 95 G~~~li~~~~~~~~g~i~~~~--~~~~v~~~~vtt~i~~pl~~~~~~~ 140 (451)
|.-.++...-..+.+- ++.. .+...+..++..++.|.+..++.-+
T Consensus 126 G~SAi~A~a~~i~a~~-~~~a~ava~V~lfg~vam~~~P~l~~~l~l~ 172 (305)
T PF03601_consen 126 GASAIAATAPVIKAKE-EDVAYAVATVFLFGTVAMFLYPLLGHALGLS 172 (305)
T ss_pred hHHHHHHHcccccCCC-CceeeeehHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8887776655554432 1111 2222333344445556666654433
No 75
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=85.33 E-value=4.3 Score=36.53 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=33.3
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
+|++.+.||.|+.-++.++.+...+.+.+++++++...
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~ 38 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHG 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 57899999999999999999988777888999999654
No 76
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=85.26 E-value=2.3 Score=45.47 Aligned_cols=79 Identities=22% Similarity=0.223 Sum_probs=42.8
Q ss_pred hhhhhhhhHHHhhhccccccccccchh----H-----HHH---HHHHHHHHHHHHHHHHHHH--HHH-----hcCCchhH
Q 042567 24 VIRNFFLPFLFIRIGLLTDIFSIKDWK----A-----FVS---LGMILVAAYLGKVWGSLLS--LIW-----FKTSTRND 84 (451)
Q Consensus 24 ~~~~~fiPlFF~~~Gl~~d~~~l~~~~----~-----~~~---~~~~~~~~~~~K~~~~~~~--~~~-----~~~~~~~s 84 (451)
....++-+++|+.+|+.+.......+. . +.. .+++.......+++..+.. .++ .+++||+.
T Consensus 266 ~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~ 345 (525)
T TIGR00831 266 VIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWK 345 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhH
Confidence 345788899999999998642111000 0 100 1111112223343332221 111 24678999
Q ss_pred HHHHHHhhhhHHHHHHHHH
Q 042567 85 LLFGCFLNIKGIIELLVFL 103 (451)
Q Consensus 85 ~~~g~~m~~~G~~~li~~~ 103 (451)
+.++. ...||.+.++.+.
T Consensus 346 ~v~~w-~G~RG~vslA~al 363 (525)
T TIGR00831 346 HVVSW-AGLRGAIPLALAL 363 (525)
T ss_pred HHhee-ccchHHHHHHHHH
Confidence 88876 4569999998764
No 77
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=84.28 E-value=5.1 Score=40.38 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=62.2
Q ss_pred hhhhhhHHHhhhccc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH-HHhhhhHH-HHHHHH
Q 042567 26 RNFFLPFLFIRIGLL-TDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFG-CFLNIKGI-IELLVF 102 (451)
Q Consensus 26 ~~~fiPlFF~~~Gl~-~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g-~~m~~~G~-~~li~~ 102 (451)
..+.-|+. +.+|.. +|+..+.+.-+|.. .++++..+++-.+++++.+|++|+-+-|+-..+ +.|+.+|- =|+.++
T Consensus 326 k~~t~~Lm-~giGv~ytdl~ev~~alt~~~-vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVL 403 (438)
T COG3493 326 KNLTWPLM-AGIGVAYTDLNEVAAALTWQN-VIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVL 403 (438)
T ss_pred HhhHHHHH-HhhhhccccHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHh
Confidence 34555554 456666 89988875445553 344455566778889999999998666655554 88876655 488888
Q ss_pred HHHHhcCCCChhhHHH
Q 042567 103 LRWIIYKPIDVQTFST 118 (451)
Q Consensus 103 ~~~~~~g~i~~~~~~~ 118 (451)
...-..++++-.+-+.
T Consensus 404 sAa~RM~LmpFAQiSs 419 (438)
T COG3493 404 SAADRMELMPFAQISS 419 (438)
T ss_pred hhcchhccccHHHHHh
Confidence 8888888887544443
No 78
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=84.24 E-value=4.5 Score=41.39 Aligned_cols=100 Identities=19% Similarity=0.083 Sum_probs=67.5
Q ss_pred CchhHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHh
Q 042567 12 PLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFL 91 (451)
Q Consensus 12 ~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m 91 (451)
|..+.+ .--+.++ .+|+=+||+.+|+..|+..+.+. .+ .+++.++.+..-++..++.+|++|++..+ +.++.-=
T Consensus 257 ~~~~~l-~g~~~lg-~~lly~ffa~IGa~a~i~~l~~a-p~--~~l~~~i~l~iH~~l~l~~~kl~k~~l~~-~~vAS~A 330 (378)
T PF05684_consen 257 PFRKLL-RGASELG-TFLLYLFFAVIGASADISELLDA-PS--LFLFGFIILAIHLLLMLILGKLFKIDLFE-LLVASNA 330 (378)
T ss_pred chhhcC-CchHHHH-HHHHHHHHHHHccccCHHHHHHh-HH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHhhc
Confidence 344443 3445554 78889999999999999988752 22 33445555677888889999999998754 5666666
Q ss_pred hhhHHHHHHHHHHHHhcCCCChhhHH
Q 042567 92 NIKGIIELLVFLRWIIYKPIDVQTFS 117 (451)
Q Consensus 92 ~~~G~~~li~~~~~~~~g~i~~~~~~ 117 (451)
|.-|-..-.+...++...++.+-+..
T Consensus 331 nIGGpaTA~a~A~a~~~~Lv~pgvL~ 356 (378)
T PF05684_consen 331 NIGGPATAPAVAAAKGPSLVPPGVLM 356 (378)
T ss_pred ccCCcchHHHHHHhcCCccHHHHHHH
Confidence 77777766655555555555444433
No 79
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=84.17 E-value=4 Score=40.34 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=33.8
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCC
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENS 368 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~ 368 (451)
.++++.|.||.|+--.|.++.+.-...+..+.++++.+...+
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~F 69 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKF 69 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCC
Confidence 478999999999999999998876544667889998876443
No 80
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=84.07 E-value=5.2 Score=38.61 Aligned_cols=93 Identities=11% Similarity=0.077 Sum_probs=53.6
Q ss_pred EecCCcchHHHHHHHHHHhcCCC-eEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCC-eEEEEEEe--CChHH
Q 042567 332 FFLGGPDDREAMALVSRISSHPG-MSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTR-VECHEMVA--NDSKQ 407 (451)
Q Consensus 332 ~f~Gg~ddreAl~~a~rma~~~~-~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~-v~y~e~~v--~~g~~ 407 (451)
++.=.|.|+-|++.|.||.++.+ .+++++.+-++.. .+++.+++.-... .++ +...+... .|...
T Consensus 31 ~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a---------~~~~~lr~aLAmG--aD~avli~d~~~~g~D~~~ 99 (256)
T PRK03359 31 DAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL---------TNAKGRKDVLSRG--PDELIVVIDDQFEQALPQQ 99 (256)
T ss_pred ccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch---------hhHHHHHHHHHcC--CCEEEEEecCcccCcCHHH
Confidence 33338899999999999999864 8999999976521 1123344433333 222 22221111 13333
Q ss_pred HHHHH----HhcCCCcEEEEcccCCCCcchhhh
Q 042567 408 LMDAI----KKEKDFELVIVDFAEGHMMSLLVI 436 (451)
Q Consensus 408 ~~~~i----~~~~~~DLiivG~~~~~~~~~~~g 436 (451)
+..+| ++. +||||+-|+.......-.+|
T Consensus 100 tA~~La~ai~~~-~~DLVl~G~~s~D~~tgqvg 131 (256)
T PRK03359 100 TASALAAAAQKA-GFDLILCGDGSSDLYAQQVG 131 (256)
T ss_pred HHHHHHHHHHHh-CCCEEEEcCccccCCCCcHH
Confidence 33333 333 79999999987544433333
No 81
>COG2855 Predicted membrane protein [Function unknown]
Probab=83.77 E-value=1.9 Score=42.88 Aligned_cols=86 Identities=10% Similarity=-0.006 Sum_probs=62.3
Q ss_pred HHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhH
Q 042567 16 ALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKG 95 (451)
Q Consensus 16 ~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G 95 (451)
+...-++.- .-.++++=.+.-|+++++..+.+- .+. .+.+.+..+.+-++.+++.++++|++++.++.+|.+-+.=|
T Consensus 59 ~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~~-~v~~~~~~l~~t~~~~~~lg~~lgld~~~a~Lia~GssICG 135 (334)
T COG2855 59 QTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GGS-GVLIIAITLSSTFLFAYFLGKLLGLDKKLALLIAAGSSICG 135 (334)
T ss_pred hhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Ccc-HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccchhhH
Confidence 333344443 577788888889999999988641 112 23445555566777788888899999999999999998888
Q ss_pred HHHHHHHHH
Q 042567 96 IIELLVFLR 104 (451)
Q Consensus 96 ~~~li~~~~ 104 (451)
.-.++...-
T Consensus 136 asAiaA~~p 144 (334)
T COG2855 136 ASAIAATAP 144 (334)
T ss_pred HHHHHHhCC
Confidence 887766543
No 82
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=83.10 E-value=56 Score=35.89 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=57.9
Q ss_pred ceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCCC
Q 042567 166 LRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGA 245 (451)
Q Consensus 166 ~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 245 (451)
-+||.-|+||..+-+++++...+++. .+|+|--|.+.+..+..+. + .+...+.--.|...
T Consensus 561 PQILLlV~nPrss~~Lirf~N~LKKg-----gLYilGHV~~gd~~~~~~d-----~----l~~q~~~W~s~vd~------ 620 (945)
T KOG1288|consen 561 PQILLLVSNPRSSCNLIRFCNDLKKG-----GLYILGHVIVGDDFSASMD-----E----LQQQQRAWLSFVDD------ 620 (945)
T ss_pred ceEEEEecCCcccchHHHHHHhhccc-----ceEEEEEEEeccccccccc-----h----hhHHHHHHHHHHHH------
Confidence 47999999999999999999999843 3788866666554321110 0 01111111122221
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHh-----CCCCEEEEeccC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVED-----NLIPLVLLPFHE 283 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e-----~~~dLIvlg~h~ 283 (451)
..++.++.+.-..+.-.+|-++..- -+.+.+|+||+.
T Consensus 621 -~~iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d 662 (945)
T KOG1288|consen 621 -AGIKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYD 662 (945)
T ss_pred -hhhhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeec
Confidence 2233344443335666677666543 578999999986
No 83
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=81.91 E-value=20 Score=33.72 Aligned_cols=108 Identities=11% Similarity=0.015 Sum_probs=74.5
Q ss_pred HHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHH
Q 042567 17 LVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGI 96 (451)
Q Consensus 17 l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~ 96 (451)
+..-+++-+-.+-+|+| =++..+. ++|.-++.-++++.+.-++.+++.++++|.+..-. ..+.+|-.
T Consensus 64 i~~lLgPAtVAlAvPLY-------kq~~~ik--~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~----~Sl~PkSv 130 (230)
T COG1346 64 INFLLGPATVALAVPLY-------KQRHLIK--RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELI----LSLLPKSV 130 (230)
T ss_pred HHHHHHHHHHHHhhHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH----HHhccccc
Confidence 33444444445555554 1334443 36777777777788888889999999998865433 34568888
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHh
Q 042567 97 IELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIF 137 (451)
Q Consensus 97 ~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~ 137 (451)
..=+...+..+.|=+.+-+-...++.-++.+++.|++++++
T Consensus 131 TTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 131 TTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred ccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888999998887666666666677777778888774
No 84
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=81.47 E-value=13 Score=32.91 Aligned_cols=67 Identities=10% Similarity=-0.053 Sum_probs=48.9
Q ss_pred hhhccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHH
Q 042567 35 IRIGLLTDIFSIKDW-KAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLR 104 (451)
Q Consensus 35 ~~~Gl~~d~~~l~~~-~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~ 104 (451)
..+|.+++...+.+. ..+...+..++..++.-++.+++..++.++++.+++ +...+.|.-|+.+...
T Consensus 58 ~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~---La~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 58 ILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTAF---LATSPGGASEMAALAA 125 (156)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHhCCchHHHHHHHHH
Confidence 567888887777642 244445666677777788889999999999988885 3466888888776443
No 85
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=81.45 E-value=9.9 Score=37.93 Aligned_cols=99 Identities=10% Similarity=-0.043 Sum_probs=60.3
Q ss_pred hhhccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHhcCCCCh
Q 042567 35 IRIGLLTDIFSIKD-WKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWIIYKPIDV 113 (451)
Q Consensus 35 ~~~Gl~~d~~~l~~-~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~ 113 (451)
.++|.+++...+.. ...+...++.+++.++.-++.+++.+++.++++.+++ +.+++.|.-|+.+....++. |.
T Consensus 215 ~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~---La~aPGGl~eM~l~A~~l~~---d~ 288 (318)
T PF05145_consen 215 ASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTAL---LATAPGGLAEMALIALALGA---DV 288 (318)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHhCCccHHHHHHHHHHcCC---Ch
Confidence 35677777666543 2234445566666677788889999999999877765 55789999888775544443 33
Q ss_pred hhHHHH-HHHHHHHHHhHHHHHHHhcC
Q 042567 114 QTFSTL-VLFNLVLTAIVTPLISIFYK 139 (451)
Q Consensus 114 ~~~~~~-v~~~~vtt~i~~pl~~~~~~ 139 (451)
..-+.+ ++=.++.-++.|++.+++.|
T Consensus 289 ~~V~~~q~~Rl~~v~~~~p~~~r~~~r 315 (318)
T PF05145_consen 289 AFVAAHQVVRLLFVLLLAPFIARWLRR 315 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 11111212456777777654
No 86
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=81.35 E-value=10 Score=36.95 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=34.0
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
++|+|.+.||+|+--++.++.++.++ ..+.+++|...
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~ 58 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHG 58 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCC
Confidence 69999999999999999999999988 99999999754
No 87
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=80.52 E-value=20 Score=37.00 Aligned_cols=105 Identities=15% Similarity=0.057 Sum_probs=59.8
Q ss_pred hhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHH
Q 042567 27 NFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGS--LLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLR 104 (451)
Q Consensus 27 ~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~--~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~ 104 (451)
.+=+=++...+|+.+|+..+....... ........+..=++.+ +... ++++++..++.+|..++.--. =+++.+
T Consensus 63 elGvi~LlF~~GLE~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~i 138 (397)
T COG0475 63 ELGVVFLLFLIGLEFDLERLKKVGRSV-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKI 138 (397)
T ss_pred HHhHHHHHHHHHHCcCHHHHHHhchhh-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHH
Confidence 333445667789999999887422221 2222222222222222 3333 689999999999998765322 144566
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHhHHHHHH
Q 042567 105 WIIYKPIDVQTFSTLVLFNLVLTAIVTPLIS 135 (451)
Q Consensus 105 ~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~ 135 (451)
..+.|.++.+.-...+...++.=+++-|++.
T Consensus 139 L~e~~~~~~~~g~~~l~~~i~~Di~~i~lLa 169 (397)
T COG0475 139 LMELGLLKTREGQLILGALVFDDIAAILLLA 169 (397)
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776665555444444333333333
No 88
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=80.50 E-value=18 Score=41.04 Aligned_cols=120 Identities=9% Similarity=0.116 Sum_probs=64.1
Q ss_pred eeEEEEecCCcchHHHHHHHHHHh--cCCCeEEEEEEEecCCCC-c----------cCc----hhhhcHHHHHHHHHhcc
Q 042567 327 YNVAVFFLGGPDDREAMALVSRIS--SHPGMSITIFRIDLLENS-V----------ESE----NDRCLDDAVTKEFMVGN 389 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma--~~~~~~ltvv~v~~~~~~-~----------~~~----~~~~~~~~~l~e~~~~~ 389 (451)
.||++++-+-.+-...+.++.... ++....+.++|+++.... . .+. .....-++.++.|+.-.
T Consensus 459 lriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~ 538 (832)
T PLN03159 459 LRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYE 538 (832)
T ss_pred eeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHH
Confidence 699999994444455566665543 445688899999763211 0 000 01111234444443211
Q ss_pred CCCCCeEEEEEE-eCC----hHHHHHHHHhcCCCcEEEEcccCC-C------CcchhhhhhHHHHhhcCc
Q 042567 390 VGNTRVECHEMV-AND----SKQLMDAIKKEKDFELVIVDFAEG-H------MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 390 ~~~~~v~y~e~~-v~~----g~~~~~~i~~~~~~DLiivG~~~~-~------~~~~~~gs~~e~i~~~~~ 447 (451)
..+..+...-.+ +.. -+|+-+.+++- ..+||++|-|.. + ..+-..+..-++|.+||.
T Consensus 539 ~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~-~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~Ap 607 (832)
T PLN03159 539 QHAGCVSVQPLTAISPYSTMHEDVCNLAEDK-RVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAP 607 (832)
T ss_pred hhcCceEEEEEEEEeCcccHHHHHHHHHHhc-CCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCC
Confidence 001233322221 211 24555555555 799999999842 1 123356778889998875
No 89
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=80.37 E-value=10 Score=42.34 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=52.5
Q ss_pred hhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhHHHHHHHhhhhHHH
Q 042567 25 IRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWF--KTSTRNDLLFGCFLNIKGII 97 (451)
Q Consensus 25 ~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~--~~~~~~s~~~g~~m~~~G~~ 97 (451)
...+.+++-.+..|+.++...+.. .|..+..+++.++..-++++.++++++ |++|..++.+|.++++-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 346788999999999999998874 455444445445555555555555544 99999999999999987754
No 90
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=80.30 E-value=15 Score=37.90 Aligned_cols=114 Identities=12% Similarity=0.008 Sum_probs=71.3
Q ss_pred hhhhhHHHhhhccccccccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH-HHh-hhhHHHHHHHHH
Q 042567 27 NFFLPFLFIRIGLLTDIFSIKDWK-AFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFG-CFL-NIKGIIELLVFL 103 (451)
Q Consensus 27 ~~fiPlFF~~~Gl~~d~~~l~~~~-~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g-~~m-~~~G~~~li~~~ 103 (451)
++|+=+||+++|+..+++.+.+.. .......+..+..++..+.+...+..+|+++.-++..| ..| -..|...-..-.
T Consensus 67 ~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~~ 146 (398)
T TIGR00210 67 DPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWSPV 146 (398)
T ss_pred HHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHHHH
Confidence 788999999999999998876422 22223344445666777777777889999988887754 333 223333222222
Q ss_pred HHHhcCCCChhhHHH--HHHHHHHHHHhHHHHHHHhcCc
Q 042567 104 RWIIYKPIDVQTFST--LVLFNLVLTAIVTPLISIFYKP 140 (451)
Q Consensus 104 ~~~~~g~i~~~~~~~--~v~~~~vtt~i~~pl~~~~~~~ 140 (451)
+..+.|.-+.....+ -.+..+..+++..|+.+++.++
T Consensus 147 f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk 185 (398)
T TIGR00210 147 FYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIR 185 (398)
T ss_pred HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 222356655444333 3344566678899999997654
No 91
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=79.78 E-value=5.9 Score=39.00 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=32.7
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENS 368 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~ 368 (451)
++++.|.||.|+--.|.++.+.....+..+.++++.+...|
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F 61 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKF 61 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCC
Confidence 45678999999999999998886554677899999876443
No 92
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=79.59 E-value=5.1 Score=36.28 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=32.6
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
+|+|.+.||+|+-..+.++..+.+..+.++++++|...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~ 38 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHG 38 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-S
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 58899999999999999999999999999999999854
No 93
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=79.48 E-value=14 Score=39.56 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=50.5
Q ss_pred hhhhhhHHHhhhccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHH
Q 042567 26 RNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAA-YLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIEL 99 (451)
Q Consensus 26 ~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~-~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~l 99 (451)
..+|+|+.....|+++|.+.+.. .+..+..+.+.. ++.-+++++...++.++||..++.+|..+++...+..
T Consensus 52 ~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 52 LFLFLPPLLFEAAMNTDLRELRE--NFRPIALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 35799999999999999998864 333333333333 3333444444445679999999999999998877654
No 94
>PRK12342 hypothetical protein; Provisional
Probab=79.32 E-value=10 Score=36.60 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=52.5
Q ss_pred EecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEEEEeCChHHH---
Q 042567 332 FFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHEMVANDSKQL--- 408 (451)
Q Consensus 332 ~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~g~~~--- 408 (451)
++.=.|.|+-|++.|.|+. ..+.+++++.+-++.. .+.+++++.-.... .+-+...+... .|.|+
T Consensus 30 ~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a---------~~~~l~r~alamGa-D~avli~d~~~-~g~D~~at 97 (254)
T PRK12342 30 EAKISQFDLNAIEAASQLA-TDGDEIAALTVGGSLL---------QNSKVRKDVLSRGP-HSLYLVQDAQL-EHALPLDT 97 (254)
T ss_pred CccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChH---------hHHHHHHHHHHcCC-CEEEEEecCcc-CCCCHHHH
Confidence 3333889999999999999 5689999999965421 11123343333331 12222222211 12233
Q ss_pred H----HHHHhcCCCcEEEEcccCCCCcchhhh
Q 042567 409 M----DAIKKEKDFELVIVDFAEGHMMSLLVI 436 (451)
Q Consensus 409 ~----~~i~~~~~~DLiivG~~~~~~~~~~~g 436 (451)
. ++++.. +||||+-|+.......-.+|
T Consensus 98 a~~La~~i~~~-~~DLVl~G~~s~D~~tgqvg 128 (254)
T PRK12342 98 AKALAAAIEKI-GFDLLLFGEGSGDLYAQQVG 128 (254)
T ss_pred HHHHHHHHHHh-CCCEEEEcCCcccCCCCCHH
Confidence 2 233333 79999999887554444444
No 95
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=78.86 E-value=10 Score=38.48 Aligned_cols=121 Identities=12% Similarity=0.027 Sum_probs=72.7
Q ss_pred hhhhhhhhhhhHHHhhhccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHH-HH
Q 042567 21 SEVVIRNFFLPFLFIRIGLLTDIFSIKD-WKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGI-IE 98 (451)
Q Consensus 21 i~~~~~~~fiPlFF~~~Gl~~d~~~l~~-~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~-~~ 98 (451)
++....+.|+=+||+.+|+.-++..+.. +..............+..-......+++.|.++.-++..|...-..|+ ..
T Consensus 63 fd~~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGta 142 (404)
T COG0786 63 FDTSLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTA 142 (404)
T ss_pred CCcccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchH
Confidence 3344468899999999999999998863 222222223333333444444555667778877777776544333333 23
Q ss_pred HHHHHHHHhcCCCChhhHH--HHHHHHHHHHHhHHHHHHHhcCcc
Q 042567 99 LLVFLRWIIYKPIDVQTFS--TLVLFNLVLTAIVTPLISIFYKPR 141 (451)
Q Consensus 99 li~~~~~~~~g~i~~~~~~--~~v~~~~vtt~i~~pl~~~~~~~~ 141 (451)
-+......+.|.=+....+ .-....+.-.++.+|+.+|+.++.
T Consensus 143 AA~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~ 187 (404)
T COG0786 143 AAWGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKN 187 (404)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhc
Confidence 4455666667765543322 223334444677899999987643
No 96
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=77.51 E-value=7.9 Score=39.80 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=71.7
Q ss_pred HhhhhhhhhhhhhHHHhhhccc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-HHHHHHhh-hhH
Q 042567 19 EKSEVVIRNFFLPFLFIRIGLL-TDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRND-LLFGCFLN-IKG 95 (451)
Q Consensus 19 ~ki~~~~~~~fiPlFF~~~Gl~-~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s-~~~g~~m~-~~G 95 (451)
.+...|...-|.|-..+.+|+. +|+..+.+.-+|. -+++++..+++=.+++++.++++|+-+-|+ +..|+.|+ ..|
T Consensus 299 ~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GG 377 (414)
T PF03390_consen 299 KQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGG 377 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCC
Confidence 4555566677888888899999 9998887544555 346666777888999999999999866554 55564664 455
Q ss_pred HHHHHHHHHHHhcCCCChhhHH
Q 042567 96 IIELLVFLRWIIYKPIDVQTFS 117 (451)
Q Consensus 96 ~~~li~~~~~~~~g~i~~~~~~ 117 (451)
.=|++++..+...+++.=.+.+
T Consensus 378 tGDvAVLsAa~RM~LmpFAQIs 399 (414)
T PF03390_consen 378 TGDVAVLSAANRMELMPFAQIS 399 (414)
T ss_pred CCcchheehhhhcccccHHHHH
Confidence 5699999999888888644433
No 97
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=76.42 E-value=7.5 Score=39.06 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=66.8
Q ss_pred HHHHhhhh---hhhhhhhhHHHhhhccc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHH
Q 042567 16 ALVEKSEV---VIRNFFLPFLFIRIGLL-TDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLF-GCF 90 (451)
Q Consensus 16 ~l~~ki~~---~~~~~fiPlFF~~~Gl~-~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~-g~~ 90 (451)
.+.++.+. |...-+.+..++.+|+. +|+..+.+.-+|. .+++++..+++=.+++++.+|++|+-+-|+-.. |+.
T Consensus 226 ~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~-~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC 304 (347)
T TIGR00783 226 EIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ-FVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLC 304 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-HhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhh
Confidence 34444443 33344555556667877 8888776432333 456777788888999999999999866665555 546
Q ss_pred hh-hhHHHHHHHHHHHHhcCCCChhh
Q 042567 91 LN-IKGIIELLVFLRWIIYKPIDVQT 115 (451)
Q Consensus 91 m~-~~G~~~li~~~~~~~~g~i~~~~ 115 (451)
|+ ..|.=|++++..+...+++.=.+
T Consensus 305 ~~~~GGtGDvavLsAa~RM~LmpfAQ 330 (347)
T TIGR00783 305 NSGMGGTGDVAVLSASNRMNLIPFAQ 330 (347)
T ss_pred ccCCCCCCceeeeehhhhcccccHHH
Confidence 64 45566999999998888886444
No 98
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=76.17 E-value=5.1 Score=42.17 Aligned_cols=74 Identities=16% Similarity=0.351 Sum_probs=47.6
Q ss_pred hHhHHHHHHhCCCCEEEEec---cC-CCcccccchhhhHHHHHHhhcCCccEEEeecCCCCCCCC-------CCcceeEE
Q 042567 262 HQSICKLVEDNLIPLVLLPF---HE-NGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLTYYHP-------SNICYNVA 330 (451)
Q Consensus 262 ~~~I~~~A~e~~~dLIvlg~---h~-~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~~~-------~~~~~~I~ 330 (451)
.++||+.|+|+++|||++|- |. .-.-..-+..++.+-+.-+..-||..=++-|.+..+... .++.-+|.
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIs 120 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNIS 120 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCccee
Confidence 57999999999999999994 33 111111122444455555667899998988887554321 12225778
Q ss_pred EEecC
Q 042567 331 VFFLG 335 (451)
Q Consensus 331 v~f~G 335 (451)
+|.|+
T Consensus 121 IPVFs 125 (646)
T KOG2310|consen 121 IPVFS 125 (646)
T ss_pred eeeEE
Confidence 88875
No 99
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=76.10 E-value=5.9 Score=40.27 Aligned_cols=124 Identities=13% Similarity=0.123 Sum_probs=69.9
Q ss_pred cCCCCchhHHHHhhhhhhhhhhhhHHHhhhccccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH--
Q 042567 8 PAGPPLGSALVEKSEVVIRNFFLPFLFIRIGLLTD-IFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRND-- 84 (451)
Q Consensus 8 p~~~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d-~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s-- 84 (451)
-+-.-+..+-.+.+..++..+++|.+.+..=.+.+ ...+. .++.+.+..++..+.-++.+++..++++.+.++.
T Consensus 20 ~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (385)
T PF03547_consen 20 GRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL---SLWFIPVFAFIIFILGLLLGFLLSRLFRLPKEWRGV 96 (385)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceE
Confidence 33345666777889999999999998777666644 33333 3444444444444445666677777777765443
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcC
Q 042567 85 LLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYK 139 (451)
Q Consensus 85 ~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~ 139 (451)
..++...+.-|.+.+.+...-+.. +.....++..++.+++.-++...+..
T Consensus 97 ~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 97 FVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred EEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 344444555577766666554443 22233333333334444444444443
No 100
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=75.44 E-value=58 Score=30.88 Aligned_cols=107 Identities=11% Similarity=0.009 Sum_probs=70.5
Q ss_pred HHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHH
Q 042567 18 VEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGII 97 (451)
Q Consensus 18 ~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~ 97 (451)
..=+.+-+-.+-+|+| =+++.+. ++|.-+++-++++.+.-++.+++.++++|.+.. +-..|.+|-..
T Consensus 68 ~~lLgPAtVALAvPLY-------~q~~~lk--~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVT 134 (232)
T PRK04288 68 SFFLEPATIAFAIPLY-------KKRDVLK--KYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAAT 134 (232)
T ss_pred HHHHHHHHHHHHHHHH-------HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhh
Confidence 3334444445555655 2344443 256656666667777788888999999988653 33556789888
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHh
Q 042567 98 ELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIF 137 (451)
Q Consensus 98 ~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~ 137 (451)
.=+...+..+.|-+..-.-...++.-++-.++.|++++++
T Consensus 135 tPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 135 TAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888888888888665554555555566667777777774
No 101
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=74.81 E-value=5.9 Score=39.28 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=34.9
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCcc
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVE 370 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~ 370 (451)
.++++.|.||+|+--.|.++.+.....+..+.++++.+...|.+
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpE 81 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFRE 81 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHH
Confidence 35688999999999999999988765566788999877655443
No 102
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=73.52 E-value=3.5 Score=40.89 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=36.2
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCe-EEEEEEEecCCCC
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGM-SITIFRIDLLENS 368 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~-~ltvv~v~~~~~~ 368 (451)
.+|+|.|.||.|+-..|.++...|++.+- +++|+++.-+.+.
T Consensus 28 ~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QY 70 (407)
T COG3969 28 PRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQY 70 (407)
T ss_pred CeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhh
Confidence 69999999999999999999999987766 8999998655443
No 103
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=73.09 E-value=11 Score=33.84 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=32.7
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCC--CeEEEEEEEecC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHP--GMSITIFRIDLL 365 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~--~~~ltvv~v~~~ 365 (451)
||++.+.||.|+--++.++.+..++. +.+++.+++...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 57899999999999999998887765 788999998754
No 104
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=72.12 E-value=33 Score=35.71 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=57.4
Q ss_pred hhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhHHHHHHHhhhhHHHHHHH
Q 042567 27 NFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWF--KTSTRNDLLFGCFLNIKGIIELLV 101 (451)
Q Consensus 27 ~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~--~~~~~~s~~~g~~m~~~G~~~li~ 101 (451)
.+|+|+-....|+++|.+.+.. .|..+..+.....+...++..+..++. ++|+..++.+|..+++-.-+.+.-
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~--~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRR--VWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence 7888888999999999999874 455556666666666777777777777 889999999999999877766533
No 105
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=72.08 E-value=37 Score=34.14 Aligned_cols=81 Identities=15% Similarity=0.061 Sum_probs=54.4
Q ss_pred hhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHH
Q 042567 25 IRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVW-GSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFL 103 (451)
Q Consensus 25 ~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~-~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~ 103 (451)
....++-+=.+..|.++++..+.+- .+. .+.+.+..+++=+. +.++..|++|++++.++.+|.+.+.=|.-.++...
T Consensus 63 ~~k~lLr~gIVLlG~~l~~~~i~~~-G~~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a 140 (335)
T TIGR00698 63 AKPFLLRIGITLYGFRLTFPYIADV-GPN-EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIE 140 (335)
T ss_pred HHHHHHHHHHHHHCccccHHHHHHh-hHH-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhc
Confidence 3457777778888999999988631 222 22222333333344 45555589999999999999999888887776655
Q ss_pred HHHh
Q 042567 104 RWII 107 (451)
Q Consensus 104 ~~~~ 107 (451)
-..+
T Consensus 141 ~~i~ 144 (335)
T TIGR00698 141 PVIK 144 (335)
T ss_pred cccC
Confidence 4333
No 106
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=70.36 E-value=33 Score=33.19 Aligned_cols=92 Identities=14% Similarity=0.046 Sum_probs=54.5
Q ss_pred EecCCcchHHHHHHHHHHhc-CCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCe-EEEEEEe--CChHH
Q 042567 332 FFLGGPDDREAMALVSRISS-HPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRV-ECHEMVA--NDSKQ 407 (451)
Q Consensus 332 ~f~Gg~ddreAl~~a~rma~-~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v-~y~e~~v--~~g~~ 407 (451)
++.=.+.|+-|++.|.||.+ ..+.+++++.+-++.. ++.+++..... .++. ...+... .|...
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------~~~lr~aLAmG--aDraili~d~~~~~~d~~~ 98 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------EEALREALAMG--ADRAILITDRAFAGADPLA 98 (260)
T ss_pred CcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------HHHHHHHHhcC--CCeEEEEecccccCccHHH
Confidence 33336889999999999999 7999999999965421 23333333332 2332 2222221 23334
Q ss_pred HHHHHHhcC---CCcEEEEcccCCCCcchhhh
Q 042567 408 LMDAIKKEK---DFELVIVDFAEGHMMSLLVI 436 (451)
Q Consensus 408 ~~~~i~~~~---~~DLiivG~~~~~~~~~~~g 436 (451)
+...|.+.. ++|||+.|........-..|
T Consensus 99 ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg 130 (260)
T COG2086 99 TAKALAAAVKKIGPDLVLTGKQAIDGDTGQVG 130 (260)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCCccchH
Confidence 444444332 89999999986544433333
No 107
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=69.65 E-value=21 Score=30.82 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=45.0
Q ss_pred CCchHhHHHHHHhCCCCEEEEeccC--CCcccccchhhhHHHHHHhhcC-CccEEEeecCCC
Q 042567 259 NTMHQSICKLVEDNLIPLVLLPFHE--NGEFQSRTACVQNFNKNVLSYA-PCTVGIFVDRGL 317 (451)
Q Consensus 259 ~~~~~~I~~~A~e~~~dLIvlg~h~--~G~~e~~~~~~gs~~~~Vl~~a-pc~V~Ilvdr~~ 317 (451)
....+.+.+++++.+++.||+|.-. ||...........+.+++-++. ++|| .++|...
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPV-ILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCCh
Confidence 5778999999999999999998866 7775544456778888888886 8998 4566543
No 108
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=68.73 E-value=15 Score=33.83 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=45.8
Q ss_pred hhhhhHHHhhhccccccccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhh
Q 042567 27 NFFLPFLFIRIGLLTDIFSIKDWK-AFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNI 93 (451)
Q Consensus 27 ~~fiPlFF~~~Gl~~d~~~l~~~~-~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~ 93 (451)
.+.+=+|++.+.+.-|-..+.+-. .-+..+++-+..++|-++++++.+++++++++|++++|.++.=
T Consensus 29 ~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~Gw 96 (191)
T PF03956_consen 29 ALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGW 96 (191)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcH
Confidence 445555666555555632222111 1123567777888999999999999999999999999987643
No 109
>PRK10711 hypothetical protein; Provisional
Probab=68.29 E-value=67 Score=30.45 Aligned_cols=83 Identities=7% Similarity=0.039 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhH
Q 042567 51 AFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIV 130 (451)
Q Consensus 51 ~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~ 130 (451)
+|.-+.+-++++.+.-++.+++.++++|.+..-. ..|.+|....=+...+..+.|-+..-.-...++.-++-.++.
T Consensus 87 ~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~----~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g 162 (231)
T PRK10711 87 RWKSIISICFIGSVVAMVTGTAVALWMGATPEIA----ASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFG 162 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH----HHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 4555555566677777888899999998854433 456788888888888888887765444344444445556667
Q ss_pred HHHHHHh
Q 042567 131 TPLISIF 137 (451)
Q Consensus 131 ~pl~~~~ 137 (451)
|++++++
T Consensus 163 ~~llk~~ 169 (231)
T PRK10711 163 HTLLNAM 169 (231)
T ss_pred HHHHHHc
Confidence 7777764
No 110
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=67.73 E-value=1.3e+02 Score=29.50 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=73.4
Q ss_pred CceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecCCCCCCCC--
Q 042567 245 AAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLTYYHP-- 322 (451)
Q Consensus 245 ~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~~~-- 322 (451)
++..|-.+.... ..+...|++.|++.++.+||.-..+.-.. .+...++.......+++++||.+=-|++.....-
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~-~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~ 92 (281)
T PRK06806 16 ENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNH-SPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKE 92 (281)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhcc-CChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Confidence 356666666665 67899999999999999999877541100 1223577788889999999999988988542100
Q ss_pred -CCcceeEEEEecCCcchHHHHHHHHHH---hcCCCeEE--EEEEE
Q 042567 323 -SNICYNVAVFFLGGPDDREAMALVSRI---SSHPGMSI--TIFRI 362 (451)
Q Consensus 323 -~~~~~~I~v~f~Gg~ddreAl~~a~rm---a~~~~~~l--tvv~v 362 (451)
-+.....++..--..+.+|-++.++++ ++..|+.+ .+.|+
T Consensus 93 Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghl 138 (281)
T PRK06806 93 ALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRV 138 (281)
T ss_pred HHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE
Confidence 000123344444344667777776554 45566554 45555
No 111
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=67.40 E-value=30 Score=37.35 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=50.2
Q ss_pred hhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCchhHHHHHHHhhhhHH
Q 042567 26 RNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIW---------FKTSTRNDLLFGCFLNIKGI 96 (451)
Q Consensus 26 ~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~---------~~~~~~~s~~~g~~m~~~G~ 96 (451)
..+|+|.-....|..+|.+.+.. ++.-++.+.+.+.+.-.+.+....++ .++++.+++.+|.++++-.-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~--n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFE--NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 46789999999999999998874 34433333333333333332222221 25699999999999999998
Q ss_pred HHHHHH
Q 042567 97 IELLVF 102 (451)
Q Consensus 97 ~~li~~ 102 (451)
+.+...
T Consensus 147 VAVlai 152 (559)
T TIGR00840 147 VAVLAV 152 (559)
T ss_pred HHHHHH
Confidence 877643
No 112
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=67.00 E-value=18 Score=31.89 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=25.3
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEEEEe
Q 042567 336 GPDDREAMALVSRISSHPGMSITIFRID 363 (451)
Q Consensus 336 g~ddreAl~~a~rma~~~~~~ltvv~v~ 363 (451)
.+.|+|+++.|+++++..+.+++++-+-
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G 41 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLG 41 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 5789999999999999999999999886
No 113
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=65.58 E-value=81 Score=29.59 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhH
Q 042567 51 AFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIV 130 (451)
Q Consensus 51 ~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~ 130 (451)
+|.-++.-++.+.+.-+..+++.++++|.+..-. ..+.+|-...=+...+..+.|-...-.-...++.-++-..+.
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~----~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g 151 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPEII----LSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLG 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH----HHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhH
Confidence 4554555666666777788888899998855333 445688888777778888888765444444444455556667
Q ss_pred HHHHHH
Q 042567 131 TPLISI 136 (451)
Q Consensus 131 ~pl~~~ 136 (451)
|+++++
T Consensus 152 ~~llk~ 157 (215)
T PF04172_consen 152 PPLLKL 157 (215)
T ss_pred HHHHhH
Confidence 777777
No 114
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=65.32 E-value=1.3e+02 Score=28.61 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=52.7
Q ss_pred eEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecCCCCCCCCCCcceeE-
Q 042567 251 PFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLTYYHPSNICYNV- 329 (451)
Q Consensus 251 ~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~~~~~~~~~I- 329 (451)
..+.++|.....++..+.+.+.++|.|++|-. . .+..+-.+.+.+=+..+.||.++......- .+ ..+.+
T Consensus 10 h~~liDPdK~~~~~~~~~~~~~gtDai~VGGS----~--~~~~~d~vv~~ik~~~~lPvilfPg~~~~v-s~--~aDail 80 (230)
T PF01884_consen 10 HATLIDPDKPNPEEALEAACESGTDAIIVGGS----D--TGVTLDNVVALIKRVTDLPVILFPGSPSQV-SP--GADAIL 80 (230)
T ss_dssp EEEEE-TTSS-HHHHHHHHHCTT-SEEEEE-S----T--HCHHHHHHHHHHHHHSSS-EEEETSTCCG---T--TSSEEE
T ss_pred eEEEECCCCCCcHHHHHHHHhcCCCEEEECCC----C--CccchHHHHHHHHhcCCCCEEEeCCChhhc-Cc--CCCEEE
Confidence 57889999999999999999999999999954 2 112334444444445889986664332211 11 11566
Q ss_pred EEEecCCcch-------HHHHHHHHHHh
Q 042567 330 AVFFLGGPDD-------REAMALVSRIS 350 (451)
Q Consensus 330 ~v~f~Gg~dd-------reAl~~a~rma 350 (451)
++..+-|.|. .+|+...+++-
T Consensus 81 ~~svlNs~n~~~iig~~~~aa~~~~~~~ 108 (230)
T PF01884_consen 81 FPSVLNSRNPYWIIGAQVEAAPLIKKLG 108 (230)
T ss_dssp EEEETTBSSTTTTTHHHHHHHHHCHHHH
T ss_pred EEEEecCCCcchHhhHHHHHHHHHHhhc
Confidence 3444434333 66777777776
No 115
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=64.17 E-value=14 Score=38.25 Aligned_cols=118 Identities=14% Similarity=0.223 Sum_probs=84.3
Q ss_pred HHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhH
Q 042567 16 ALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKG 95 (451)
Q Consensus 16 ~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G 95 (451)
.+..-.+-+ .++---+.|...|+.++.+.+.. -....+++.+.+.++.+-++.|+.-.-|+++++|-+.++. -.-||
T Consensus 265 ~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~-iavPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRG 341 (574)
T COG3263 265 GILRFFDGL-AWLAQILMFLVLGLLVTPSQLLP-IAIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRG 341 (574)
T ss_pred HHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhH-hhHHHHHHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhccc
Confidence 344444544 25555567888999999988874 2455566777788889999999999899999999877654 45799
Q ss_pred HHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHHhHHHHHHH
Q 042567 96 IIELLVFLRWIIYKPIDVQ-TFSTLVLFNLVLTAIVTPLISI 136 (451)
Q Consensus 96 ~~~li~~~~~~~~g~i~~~-~~~~~v~~~~vtt~i~~pl~~~ 136 (451)
.+.++.+..=+-.|+=+.+ .|++..+.++++-++-+..+.+
T Consensus 342 Av~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~tl~~ 383 (574)
T COG3263 342 AVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLPW 383 (574)
T ss_pred chhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCcchH
Confidence 9999999988888876554 4555555555554444444444
No 116
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=61.76 E-value=36 Score=35.50 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=41.1
Q ss_pred eeEEEEecCCcchHHHHHHHHHHh-cCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhcc
Q 042567 327 YNVAVFFLGGPDDREAMALVSRIS-SHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGN 389 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma-~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~ 389 (451)
.+|++.+.||.|+--.+.++.++. ..++.++++++|+-.-.. +.+.+.++.+++....
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~-----~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP-----NADSWVKHCEQVCQQW 74 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc-----chHHHHHHHHHHHHHc
Confidence 689999999999998888888776 456889999999754221 1222345666665443
No 117
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=60.48 E-value=23 Score=30.70 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=42.3
Q ss_pred chHhHHHHHHhCCCCEEEEeccC--CCcccccchhhhHHHHHHhhcCCccEEEeecCCC
Q 042567 261 MHQSICKLVEDNLIPLVLLPFHE--NGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGL 317 (451)
Q Consensus 261 ~~~~I~~~A~e~~~dLIvlg~h~--~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~ 317 (451)
..+.|.+.+++.+++.||+|.-. +|...........+.+++-++.++|| +++|...
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPV-VLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 46889999999999999999765 67654334466778888877778998 5566543
No 118
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=60.42 E-value=15 Score=36.37 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=35.2
Q ss_pred HHHHHHHHHhccCCCCCeEEEEEEe---CChHHHHHHHHhcC------CCcEEEEcccCCC---CcchhhhhhHHHHh
Q 042567 378 DDAVTKEFMVGNVGNTRVECHEMVA---NDSKQLMDAIKKEK------DFELVIVDFAEGH---MMSLLVIQSVESIK 443 (451)
Q Consensus 378 ~~~~l~e~~~~~~~~~~v~y~e~~v---~~g~~~~~~i~~~~------~~DLiivG~~~~~---~~~~~~gs~~e~i~ 443 (451)
..+|+..++.++.. -.+.+....| +...+++++|+.+. ++|+||++|++|. ++-|=-=.++++|.
T Consensus 28 ~~D~~~~~~~r~~~-~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~ 104 (319)
T PF02601_consen 28 IQDFLRTLKRRNPI-VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIA 104 (319)
T ss_pred HHHHHHHHHHhCCC-cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHH
Confidence 34555555543311 1222223344 23355666776664 3899999999986 44333344555554
No 119
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=60.00 E-value=71 Score=26.83 Aligned_cols=91 Identities=9% Similarity=0.114 Sum_probs=52.5
Q ss_pred hCCCCCCCceEEEEEEeeccCCCCcccccccccccccc--cc-cHHHHHHHHHHHHhcCCCceeEeeEEEEcCCCCchHh
Q 042567 188 SNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLV--AN-STDRIMRAMTRYSKGSGAAVKVQPFKMISPYNTMHQS 264 (451)
Q Consensus 188 la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~--~~-~~~~i~~~f~~~~~~~~~~V~v~~~~~vs~~~~~~~~ 264 (451)
+++.+.-.-.|.-+|++|.++- .+-+...+.-=.... .. ..+...+-++++.+..-.++-+...-.+ ..+.++
T Consensus 15 vaG~~gL~r~V~~v~v~e~~d~-~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~---~~iP~~ 90 (123)
T PF07905_consen 15 VAGENGLDRPVRWVHVMEAPDP-SDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYL---DEIPEE 90 (123)
T ss_pred ecCCccCCCcEEEEEEeecCCH-HHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCcc---ccCCHH
Confidence 3443333456889999998752 222222111000000 12 2234556666666553345545443232 578899
Q ss_pred HHHHHHhCCCCEEEEecc
Q 042567 265 ICKLVEDNLIPLVLLPFH 282 (451)
Q Consensus 265 I~~~A~e~~~dLIvlg~h 282 (451)
+.+.|++.+.-++.+||+
T Consensus 91 ~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 91 IIELADELGLPLIEIPWE 108 (123)
T ss_pred HHHHHHHcCCCEEEeCCC
Confidence 999999999999999995
No 120
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=59.34 E-value=1.3e+02 Score=28.46 Aligned_cols=83 Identities=11% Similarity=0.072 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhH
Q 042567 51 AFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIV 130 (451)
Q Consensus 51 ~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~ 130 (451)
+|.-+++-++++.+.-+..+++.++++|.+. .+. ..|.+|-...=+...+..+.|-+..-.-...++.-++-+++.
T Consensus 86 ~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--~i~--~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 86 YWKEIILNVAVGSVIAIISGTLLALLLGLGP--EII--ASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHH--HHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556667777888899998863 333 356788888888888888887754433334444445556667
Q ss_pred HHHHHHh
Q 042567 131 TPLISIF 137 (451)
Q Consensus 131 ~pl~~~~ 137 (451)
|++++++
T Consensus 162 ~~ll~~~ 168 (226)
T TIGR00659 162 PMVLRYF 168 (226)
T ss_pred HHHHHHc
Confidence 7777774
No 121
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=57.26 E-value=2e+02 Score=28.32 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=60.1
Q ss_pred hHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCCchhHHHHHHH
Q 042567 15 SALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWG----SLLSLIWFKTSTRNDLLFGCF 90 (451)
Q Consensus 15 ~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~----~~~~~~~~~~~~~~s~~~g~~ 90 (451)
..+.+-++.++ ..-.|+-.+.+|+.++...+.. .+..+.. ..+.|++. +++...+++.+... .....+
T Consensus 203 ~~l~~~l~~lg-~~~~plaLl~lG~~l~~~~~~~--~~~~~~~----~~~~klil~P~i~~~~~~~~~l~~~~-~~~~vl 274 (321)
T TIGR00946 203 GLILKSISILS-GATTPMALFSLGLALSPRKIKL--GVRDAIL----ALIVRFLVQPAVMAGISKLIGLRGLE-LSVAIL 274 (321)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhChhhhcc--ChHHHHH----HHHHHHHHHHHHHHHHHHHhCCChHH-HHHHHH
Confidence 45666666665 7788888888898888766542 2222222 22334433 34455566665422 222222
Q ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHh
Q 042567 91 LNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIF 137 (451)
Q Consensus 91 m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~ 137 (451)
++ ---.....+.++.+.|. +++.-+..+....+.++++=|++-++
T Consensus 275 ~a-a~P~a~~~~i~A~~y~~-~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 275 QA-ALPGGAVAAVLATEYEV-DVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HH-cCChhhHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 12233334444555554 55666666555555567666666553
No 122
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=52.69 E-value=2.1 Score=43.39 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=32.2
Q ss_pred HhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHH-HHHHHH---HhcCCchhHHHHHHHhhhh
Q 042567 19 EKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWG-SLLSLI---WFKTSTRNDLLFGCFLNIK 94 (451)
Q Consensus 19 ~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~-~~~~~~---~~~~~~~~s~~~g~~m~~~ 94 (451)
.-.+.+ ..+.+++.....|+++|.+.+.. .+.....+.+..++.-++. ++.... ..++++.+++.+|..++.-
T Consensus 46 ~~~~~l-~~i~l~~llF~~G~~~d~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~t 122 (380)
T PF00999_consen 46 PSFELL-AEIGLAFLLFEAGLELDIKELRR--NWRRALALGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSAT 122 (380)
T ss_dssp --S-SS-HHHHS--SSHHHHTTGGGG---------------------------------------------TTHHHHTT-
T ss_pred hHHHHH-HHHHHHHHHHHHHHhhccccccc--ccccccccccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcc
Confidence 445555 58888888899999999999864 3333344444444444444 444443 4789999999999998765
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHH
Q 042567 95 GIIELLVFLRWIIYKPIDVQTFSTLV 120 (451)
Q Consensus 95 G~~~li~~~~~~~~g~i~~~~~~~~v 120 (451)
...-.. .+-.+.+.++.+....+.
T Consensus 123 s~~~v~--~~l~~~~~~~~~~~~~~~ 146 (380)
T PF00999_consen 123 SPAIVS--PVLKELGLLPSRLGRLLL 146 (380)
T ss_dssp -HHHHH--HHH-HHHT-SSTTHHHHT
T ss_pred cccchh--hhhhhhhcccccccchhh
Confidence 433222 222244444544444443
No 123
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=52.64 E-value=1.2e+02 Score=31.59 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=60.6
Q ss_pred hhhHHHHHHhhcCC--ccEEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEec--C-CC
Q 042567 293 CVQNFNKNVLSYAP--CTVGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDL--L-EN 367 (451)
Q Consensus 293 ~~gs~~~~Vl~~ap--c~V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~--~-~~ 367 (451)
..-+++++|+-.+| |.- |+.++. +..+|+|.|.||-|.---+.++-+.+.. +-.+.++.|.- | ..
T Consensus 224 l~ds~k~rvl~i~~rl~~~-i~~~c~--------~~s~VcVlfSGGvDs~vvA~l~h~~vp~-ne~IdLINVaF~n~e~~ 293 (520)
T KOG0573|consen 224 LRDSLKDRVLVIPPRLCAN-ILLRCI--------HESNVCVLFSGGVDSTVVAVLAHYVVPE-NEPIDLINVAFGNPEGS 293 (520)
T ss_pred HHHHHhhhhhccChhHhhh-cccccc--------ccCcEEEEecCCchHHHHHHHHHhhcCC-CCceeEEEeeccCCCcc
Confidence 34567777776665 221 111111 1158999999999998888888887744 45566666643 3 22
Q ss_pred CccCchhhhcHHHHHHHHHhccCCCCCeEEEEEEeC
Q 042567 368 SVESENDRCLDDAVTKEFMVGNVGNTRVECHEMVAN 403 (451)
Q Consensus 368 ~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~ 403 (451)
++..-++++....-++|++... +.....+.|+.|.
T Consensus 294 ~~~~~PDRktgr~g~~eL~s~~-P~R~~nlV~vnV~ 328 (520)
T KOG0573|consen 294 KEQNVPDRKTGRRGLEELQSLY-PKRSWNLVEVNVT 328 (520)
T ss_pred cccCCccHHHHHHHHHHHHHhC-CcceEEEEeccCC
Confidence 2233367778888888888755 2233345565553
No 124
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=52.61 E-value=25 Score=30.48 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=28.9
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
+|++.|.||.|+--.+.++.+...+. -++.++++.+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCC
Confidence 47899999999999999888766543 46778887664
No 125
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=52.07 E-value=37 Score=29.60 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=43.5
Q ss_pred chHhHHHHHHhCCCCEEEEeccC--CCcccccchhhhHHHHHHhhcCCccEEEeecCC
Q 042567 261 MHQSICKLVEDNLIPLVLLPFHE--NGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRG 316 (451)
Q Consensus 261 ~~~~I~~~A~e~~~dLIvlg~h~--~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~ 316 (451)
-.+.+.+..++..++.||+|... +|...........+.+++-++.++|| ++.|..
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv-~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPV-VLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCE-EEEcCc
Confidence 46889999999999999999876 77655444457788899999999998 556543
No 126
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=50.82 E-value=92 Score=24.96 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=26.3
Q ss_pred EEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 329 VAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 329 I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
+++.+.||.|+.-.+.++.+... ++..+++...
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~----~~~~~~~~~~ 33 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGY----QVIAVTVDHG 33 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCC----CEEEEEEcCC
Confidence 46889999999999888887633 6888888654
No 127
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=50.36 E-value=27 Score=36.17 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=38.9
Q ss_pred hhhcHHHHHHHHHhccCCCCCeEEEEEEeCC--hHHHHHHHHhcC---CCcEEEEcccCCCCcch
Q 042567 374 DRCLDDAVTKEFMVGNVGNTRVECHEMVAND--SKQLMDAIKKEK---DFELVIVDFAEGHMMSL 433 (451)
Q Consensus 374 ~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~--g~~~~~~i~~~~---~~DLiivG~~~~~~~~~ 433 (451)
......+.+..++.+...-+.+.|...+=.+ +.+++++|+.+. +.|++||||++|.+..|
T Consensus 145 tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDL 209 (440)
T COG1570 145 TGAALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDL 209 (440)
T ss_pred chHHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHH
Confidence 3455667777777666323334454333223 468888888776 59999999999874443
No 128
>COG0679 Predicted permeases [General function prediction only]
Probab=49.60 E-value=63 Score=31.98 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=63.3
Q ss_pred CCchhHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH--HHHH
Q 042567 11 PPLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRND--LLFG 88 (451)
Q Consensus 11 ~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s--~~~g 88 (451)
..+..+-.+-++.++..+++|.-++..=.+.+.+... .+.......+..++.=+++.++..++++.+.++. ..++
T Consensus 26 ~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
T COG0679 26 GILDEEAARGLSRLVVYVALPALLFNSIATADLSGLA---DLGLIVASLVATLLAFFLLALIGRFLFKLDKRETVIFALA 102 (311)
T ss_pred cccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhh---hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 3444555667899999999999988887777776652 3444444444555555566666666666666655 4444
Q ss_pred HHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 042567 89 CFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVL 126 (451)
Q Consensus 89 ~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vt 126 (451)
...+.-|-+.+-++. .+.+++.....++...+.
T Consensus 103 ~~~~N~g~lg~pi~~-----~~~G~~gl~~~~i~~~~~ 135 (311)
T COG0679 103 SAFPNIGFLGLPVAL-----SLFGEKGLAYAVIFLIIG 135 (311)
T ss_pred HHhcccchhhHHHHH-----HHcCcchHHHHHHHHHHH
Confidence 444555555533322 344444444444444443
No 129
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=46.96 E-value=1.5e+02 Score=29.98 Aligned_cols=100 Identities=14% Similarity=-0.015 Sum_probs=55.2
Q ss_pred hhhccccccccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHhcCCCCh
Q 042567 35 IRIGLLTDIFSIKDWK-AFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWIIYKPIDV 113 (451)
Q Consensus 35 ~~~Gl~~d~~~l~~~~-~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~ 113 (451)
..+|.++|-..+.... .....++.++..++.-...+++.+++.+.++.++. +..++.|.-+++....+.+. |.
T Consensus 248 ~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~---La~sPGGl~~ma~~A~~l~a---d~ 321 (352)
T COG3180 248 ALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAY---LATSPGGLDTMAAIAAALGA---DP 321 (352)
T ss_pred HHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHcCCCcHHHHHHHHHHcCC---Ch
Confidence 3567777765554221 22223444445555566667777777787777664 55789898888775555442 32
Q ss_pred hhHHHH-HHHHHHHHHhHHHHHHHhcCc
Q 042567 114 QTFSTL-VLFNLVLTAIVTPLISIFYKP 140 (451)
Q Consensus 114 ~~~~~~-v~~~~vtt~i~~pl~~~~~~~ 140 (451)
..-..+ ++=.++...+.|++.|++.++
T Consensus 322 a~V~a~q~lRll~il~i~p~l~r~l~~~ 349 (352)
T COG3180 322 AFVMALQVLRLLFILLLGPALARFLSKR 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 222222234457777776543
No 130
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=46.86 E-value=88 Score=30.67 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=52.0
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCccc-ccchhhhHHHHHHhhcCCccEEEeecCCCC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQ-SRTACVQNFNKNVLSYAPCTVGIFVDRGLT 318 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e-~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~ 318 (451)
+..|-.+...+ ..+...|++.|++.++..||.-..+ ..+ .+...+........+++++||++=-|++..
T Consensus 17 ~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~--~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~~ 86 (284)
T PRK12857 17 GYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQG--AIKYAGIEYISAMVRTAAEKASVPVALHLDHGTD 86 (284)
T ss_pred CCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechh--HhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 45566666655 6788999999999999999987764 111 122357777888999999999998898854
No 131
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=46.69 E-value=1.2e+02 Score=28.62 Aligned_cols=79 Identities=13% Similarity=0.091 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHH
Q 042567 56 GMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLIS 135 (451)
Q Consensus 56 ~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~ 135 (451)
..+++.+++|-.+|..+ .++++.+.+.+--++++.+..|.=.--....|...|-+ .--.|++..++|++++|.+..
T Consensus 151 v~Vi~tGi~Gavlg~~l-lk~~~i~~~~ArGla~G~~sHa~GTara~E~g~~eGa~---ssL~m~L~Gi~t~~~aPll~~ 226 (230)
T COG1346 151 VFVILTGILGAVLGPLL-LKLLRIRHPVARGLALGTASHALGTARAIELGEEEGAM---SSLAMVLCGIITVLLAPLLAH 226 (230)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhccCcHHHhHHhhcchhhhhhhHHHHHcCchHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444433 34444444444444444455544333333333333322 223456777888888888877
Q ss_pred Hhc
Q 042567 136 IFY 138 (451)
Q Consensus 136 ~~~ 138 (451)
+++
T Consensus 227 l~~ 229 (230)
T COG1346 227 LIL 229 (230)
T ss_pred Hhc
Confidence 764
No 132
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=45.86 E-value=91 Score=30.57 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=52.9
Q ss_pred CceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCccc-ccchhhhHHHHHHhhcCCccEEEeecCCCC
Q 042567 245 AAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQ-SRTACVQNFNKNVLSYAPCTVGIFVDRGLT 318 (451)
Q Consensus 245 ~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e-~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~ 318 (451)
++..|-.+.... ..+...|++.|++.++..||.-..+ ... .+...+........+++++||++=-|++..
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~--~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~ 86 (284)
T PRK12737 16 EGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPG--TFSYAGTDYIVAIAEVAARKYNIPLALHLDHHED 86 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcc--HHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 355666666665 6789999999999999999976654 111 122357788889999999999998898854
No 133
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=45.49 E-value=42 Score=29.45 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=26.3
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLE 366 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~ 366 (451)
++++.|.||.|+.-.|.++.+..... .++++.+..
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg~ 35 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTGY 35 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-ST
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecCc
Confidence 47899999999999999999988874 677776543
No 134
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=45.46 E-value=22 Score=35.87 Aligned_cols=66 Identities=8% Similarity=0.077 Sum_probs=51.3
Q ss_pred hHHHHhhhhhhhhhhhhH-HHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 042567 15 SALVEKSEVVIRNFFLPF-LFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRN 83 (451)
Q Consensus 15 ~~l~~ki~~~~~~~fiPl-FF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~ 83 (451)
+.-.+-++.++..+|.|. -|.-.|=.+++..+. .||++.+.+++.++.-.+.+|+.++.++-|.+.
T Consensus 40 ~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii---~~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~ 106 (408)
T KOG2722|consen 40 RDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKII---QWWFIPVNVGLTFIIGSLIGWLVVKILRPPPQL 106 (408)
T ss_pred HHHHHHhhheeeeeecHHHHHHHHhhhccHHHHH---HHHhhHHHHHHHHHHHHHHHHHHhheecCChhh
Confidence 333444555556889996 577788889988887 478888888888888999999999999877654
No 135
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=45.34 E-value=2.7e+02 Score=28.53 Aligned_cols=100 Identities=14% Similarity=0.191 Sum_probs=62.9
Q ss_pred hhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHh---hhhHH
Q 042567 21 SEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTS-TRNDLLFGCFL---NIKGI 96 (451)
Q Consensus 21 i~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~-~~~s~~~g~~m---~~~G~ 96 (451)
+.+.+...++|+-....=++.|++.+..- . .-.++..+++.++=++|+.++...++.. -.|.+.++..+ -..|.
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~~-g-~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs 129 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILRL-G-GRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGS 129 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHh-h-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCch
Confidence 44455566677766666778899888631 2 2344555566677777887777777654 35555555444 45688
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 042567 97 IELLVFLRWIIYKPIDVQTFSTLVLFNLV 125 (451)
Q Consensus 97 ~~li~~~~~~~~g~i~~~~~~~~v~~~~v 125 (451)
+-++...-.++. +++.|+..+.+=.+
T Consensus 130 ~N~~Av~~al~~---~~~~~~a~~aaDnv 155 (378)
T PF05684_consen 130 VNFVAVAEALGV---SDSLFAAALAADNV 155 (378)
T ss_pred hHHHHHHHHHCC---CHHHHHHHHHHHHH
Confidence 888776655543 67777776554433
No 136
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=45.00 E-value=1.6e+02 Score=26.35 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=55.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCCCc
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGAA 246 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 246 (451)
||+++++.-.....++.++....+. .+..+.++|+-. +. . ...+.-.+.++.+++.. +
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~--~~~~v~~v~vd~--g~-~---------------~~~~~~~~~~~~~~~~~--g 58 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK--LKIRLIAAHVDH--GL-R---------------PESDEEAEFVQQFCKKL--N 58 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCC--CC-C---------------hhHHHHHHHHHHHHHHc--C
Confidence 5899999888888888888776532 345688888731 10 0 01122234555555543 3
Q ss_pred eeEeeEEEEcCC-------CCch--------HhHHHHHHhCCCCEEEEeccC
Q 042567 247 VKVQPFKMISPY-------NTMH--------QSICKLVEDNLIPLVLLPFHE 283 (451)
Q Consensus 247 V~v~~~~~vs~~-------~~~~--------~~I~~~A~e~~~dLIvlg~h~ 283 (451)
++..... +.+. .++. +.+.+.|++.+.+.|+.|.|.
T Consensus 59 i~~~~~~-~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~ 109 (189)
T TIGR02432 59 IPLEIKK-VDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHA 109 (189)
T ss_pred CCEEEEE-ecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 4333221 1110 1122 456678889999999999986
No 137
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=44.96 E-value=2e+02 Score=28.67 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=64.7
Q ss_pred hhHHHhhhccccccccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHhc
Q 042567 30 LPFLFIRIGLLTDIFSIKDWK-AFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWIIY 108 (451)
Q Consensus 30 iPlFF~~~Gl~~d~~~l~~~~-~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~ 108 (451)
..+-=+.+|.+++...+..-. .|...+++++..++.-.+++++..|+.+++..+++ +...+.|..++++. +.+.
T Consensus 31 q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~TA~---~~~~PGg~s~m~~l--a~~~ 105 (318)
T PF05145_consen 31 QAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRATAF---FASMPGGLSEMVAL--AEEY 105 (318)
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH---HHcCCccHHHHHHH--HHHc
Confidence 334446678888887776432 44455666677777788888888999888777765 44568888888764 4666
Q ss_pred CCCChhhHHHH-HHHHHHHHHhHHHHHHHhcCc
Q 042567 109 KPIDVQTFSTL-VLFNLVLTAIVTPLISIFYKP 140 (451)
Q Consensus 109 g~i~~~~~~~~-v~~~~vtt~i~~pl~~~~~~~ 140 (451)
|- |...-+.+ .+=.++.+.+.|+++.+..+.
T Consensus 106 ga-d~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~ 137 (318)
T PF05145_consen 106 GA-DTRRVALVQSLRLLLVVLLVPFIASLLGGG 137 (318)
T ss_pred CC-ChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 54 33322211 111122235578878776543
No 138
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=44.62 E-value=2.3e+02 Score=25.28 Aligned_cols=98 Identities=14% Similarity=0.186 Sum_probs=51.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCCCc
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGAA 246 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 246 (451)
+|+|+++.-...-.++.++..+... .+..+.++|+-.-- + ..++.-.+..+++++.. +
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~--~~~~~~~~~vdh~~-~-----------------~~s~~~~~~v~~~~~~~--~ 58 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRR--NGIKLIAVHVDHGL-R-----------------EESDEEAEFVEEICEQL--G 58 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTT--TTTEEEEEEEE-ST-S-----------------CCHHHHHHHHHHHHHHT--T
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHh--cCCCeEEEEEecCC-C-----------------cccchhHHHHHHHHHhc--C
Confidence 5889999888888888888888843 56789999984211 1 11222234445555543 4
Q ss_pred eeEeeEEEE-c--CCCCc--------hHhHHHHHHhCCCCEEEEeccCCCc
Q 042567 247 VKVQPFKMI-S--PYNTM--------HQSICKLVEDNLIPLVLLPFHENGE 286 (451)
Q Consensus 247 V~v~~~~~v-s--~~~~~--------~~~I~~~A~e~~~dLIvlg~h~~G~ 286 (451)
++......- . +..+. ++-+.+.|.+.+++.|++|-|.|..
T Consensus 59 i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~ 109 (182)
T PF01171_consen 59 IPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQ 109 (182)
T ss_dssp -EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHH
T ss_pred CceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCcc
Confidence 444322211 0 11222 1234457778999999999986433
No 139
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=42.01 E-value=1.1e+02 Score=29.93 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=52.0
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCccc-ccchhhhHHHHHHhhcCCccEEEeecCCCC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQ-SRTACVQNFNKNVLSYAPCTVGIFVDRGLT 318 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e-~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~ 318 (451)
+..|-.+...+ ..+...|++.|+|.++..||.-..+ ... .+...+........+++++||++=-|++..
T Consensus 17 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~--~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~ 86 (286)
T PRK12738 17 GYAVPAFNIHN--AETIQAILEVCSEMRSPVILAGTPG--TFKHIALEEIYALCSAYSTTYNMPLALHLDHHES 86 (286)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcCcc--hhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 55565666654 6789999999999999999986654 111 122356778889999999999998898854
No 140
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=41.80 E-value=1.8e+02 Score=28.62 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=27.9
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
++++.|.||-|+--++.++.+. .+.++..+++..+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecCC
Confidence 4788999999999999988764 2446888888754
No 141
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=41.70 E-value=2.2e+02 Score=28.79 Aligned_cols=98 Identities=11% Similarity=0.073 Sum_probs=59.9
Q ss_pred hhccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHhcCCCChh
Q 042567 36 RIGLLTDIFSIKDW-KAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQ 114 (451)
Q Consensus 36 ~~Gl~~d~~~l~~~-~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~ 114 (451)
.+|.++....+... ..|...+.++++.+.+-++.+|+..|+.+.|..+++ +..++.|..+++.. +.|.|- |..
T Consensus 70 ~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~---~gs~PGgas~m~~i--A~d~gA-d~~ 143 (352)
T COG3180 70 MIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAF---LGSSPGGASAMVSI--AQDYGA-DLR 143 (352)
T ss_pred HHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh---HhcCCchHHHHHHH--HHHhCC-Chh
Confidence 45666666665532 257777788888888889999999998867665553 56778888888664 455554 222
Q ss_pred hHHHH-HHHHHHHHHhHHHHHHHhcC
Q 042567 115 TFSTL-VLFNLVLTAIVTPLISIFYK 139 (451)
Q Consensus 115 ~~~~~-v~~~~vtt~i~~pl~~~~~~ 139 (451)
.-+.+ .+=+++.+...|.+.+..+.
T Consensus 144 ~VAl~Q~lRvl~Vvl~vplv~~~~~~ 169 (352)
T COG3180 144 LVALMQYLRVLFVVLLAPLVSRLFVG 169 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 21111 01112223556666666663
No 142
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=40.82 E-value=69 Score=33.37 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=50.4
Q ss_pred hhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHH
Q 042567 23 VVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGI 96 (451)
Q Consensus 23 ~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~ 96 (451)
.++..+-+-+...-.|++++++.+... .|..+.+-.+..++.-.+-+..+.+.++.+|-|++.+|......-.
T Consensus 61 y~vg~lALaiILfdgG~~T~lss~r~a-~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDA 133 (574)
T COG3263 61 YMVGNLALAIILFDGGFGTQLSSFRVA-AGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDA 133 (574)
T ss_pred HHHHHHHHHHHhhcCccCCcHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccH
Confidence 344466666777778999998877532 3443344444555566677778888999999999999987754433
No 143
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.79 E-value=40 Score=35.12 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=35.9
Q ss_pred hhcHHHHHHHHHhccCCCCCeEEEEEEeCC---hHHHHHHHHhcC--CCcEEEEcccCCCCcch
Q 042567 375 RCLDDAVTKEFMVGNVGNTRVECHEMVAND---SKQLMDAIKKEK--DFELVIVDFAEGHMMSL 433 (451)
Q Consensus 375 ~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~---g~~~~~~i~~~~--~~DLiivG~~~~~~~~~ 433 (451)
.....+|++.+..+... -.+.+....|-. ..++.++|+.+. ++|+||+||++|....|
T Consensus 146 gAa~~D~~~~~~~r~p~-~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL 208 (438)
T PRK00286 146 GAAIRDILTVLRRRFPL-VEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDL 208 (438)
T ss_pred cHHHHHHHHHHHhcCCC-CeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHh
Confidence 34556777777765421 233333444422 256777787775 47999999999874444
No 144
>COG0679 Predicted permeases [General function prediction only]
Probab=40.60 E-value=3.7e+02 Score=26.49 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=67.5
Q ss_pred HHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHh--hh
Q 042567 16 ALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFL--NI 93 (451)
Q Consensus 16 ~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m--~~ 93 (451)
.+.+-++.++ +--+|+=++..|+.++....... .+..+......-.+..-+..++.++.+|++.-+. ....++ .+
T Consensus 190 ~~~~~~~~l~-~a~~pl~li~lG~~L~~~~~~~~-~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~-~v~vl~~a~P 266 (311)
T COG0679 190 PLDTAVDLLA-SAASPLALIALGLSLAFLKLKGS-KPPIILIALSLKLLLAPLVALLVAKLLGLSGLAL-QVLVLLSAMP 266 (311)
T ss_pred HHHHHHHHHH-HhhhhHHHHHHhhhcchhhhccc-cchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHH-HHHHHHhhCc
Confidence 5666666664 88999999999999999555422 2222223222234555666777888888876655 333333 23
Q ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhc
Q 042567 94 KGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFY 138 (451)
Q Consensus 94 ~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~ 138 (451)
.+.. .+.++.+.+. +++..+..+....+.++++-|.+-+..
T Consensus 267 ~A~~---~~v~a~~~~~-~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 267 TAVN---AYVLARQYGG-DPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHhH---HHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3344455555 555555555555555666665555543
No 145
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=40.45 E-value=1.3e+02 Score=29.55 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=52.5
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccC-CCcccccchhhhHHHHHHhhcCCccEEEeecCCCC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHE-NGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLT 318 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~-~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~ 318 (451)
+..|-.+.... ..+...|++.|++.++..||.-..+ -... +...+........+++++||++=-|++..
T Consensus 15 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~--~~~~~~~~~~~~a~~~~VPValHLDHg~~ 84 (282)
T TIGR01858 15 GYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHA--GTEYIVALCSAASTTYNMPLALHLDHHES 84 (282)
T ss_pred CCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhC--CHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 45566666655 6789999999999999999987765 1111 22356778889999999999998898854
No 146
>PRK08185 hypothetical protein; Provisional
Probab=40.36 E-value=1.2e+02 Score=29.65 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=69.0
Q ss_pred CceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecCCCCCCCC--
Q 042567 245 AAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLTYYHP-- 322 (451)
Q Consensus 245 ~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~~~-- 322 (451)
++..|-.+...+ ..+...|++.|++.++.+|+.-..+ .....+..+........++++.||++=-|++.....-
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~--~~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ 86 (283)
T PRK08185 11 HQFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPN--ELDFLGDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMR 86 (283)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcc--hhhhccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Confidence 355666666655 6789999999999999999988765 1111112377888899999999999988988542100
Q ss_pred -CCcceeEEEEecCCcchHHHHHHHHHHh---cCCCeEE
Q 042567 323 -SNICYNVAVFFLGGPDDREAMALVSRIS---SHPGMSI 357 (451)
Q Consensus 323 -~~~~~~I~v~f~Gg~ddreAl~~a~rma---~~~~~~l 357 (451)
.+....-++...---+..|=+++++++. +..++.+
T Consensus 87 ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 87 AIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0000122233332235566666665555 6667666
No 147
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=40.22 E-value=81 Score=27.80 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=25.7
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEec
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDL 364 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~ 364 (451)
++++.+.||.|+--++.++.+. +.++..+++..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEEC
Confidence 4789999999999998888763 44677777764
No 148
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=39.57 E-value=2.5e+02 Score=27.35 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=50.2
Q ss_pred hhHHHhhhccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHh---hhhHHHHHHHHHHH
Q 042567 30 LPFLFIRIGLLTDIFSIKDW-KAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFL---NIKGIIELLVFLRW 105 (451)
Q Consensus 30 iPlFF~~~Gl~~d~~~l~~~-~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m---~~~G~~~li~~~~~ 105 (451)
+.+-+...|+.+++..+.+. ..+......++.-++.-=+.+++.+++++.+ +....|+.+ ++-|....+....
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~--~~~~~glvL~~~~P~~~~s~v~t~~- 90 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLP--PELAVGVLIVGCCPGGTASNVFTYL- 90 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHheeeCCCchHHHHHHHH-
Confidence 55666788999988777531 1111222222222333333346666677665 444444443 3334434332222
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcC
Q 042567 106 IIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYK 139 (451)
Q Consensus 106 ~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~ 139 (451)
.|- |...-..++....+.+.++.|++-.++.
T Consensus 91 --~~g-n~~la~~~~~~stlls~vt~Pl~l~~~~ 121 (286)
T TIGR00841 91 --LKG-DMALSISMTTCSTLLALGMMPLLLYIYA 121 (286)
T ss_pred --hCC-CHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3344444444454556666666666553
No 149
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=39.32 E-value=3.2e+02 Score=27.31 Aligned_cols=77 Identities=17% Similarity=0.082 Sum_probs=51.6
Q ss_pred hhhhhHHHhhhcccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHh---hhhHHHHHHHH
Q 042567 27 NFFLPFLFIRIGLLTDIFSIK-DWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFL---NIKGIIELLVF 102 (451)
Q Consensus 27 ~~fiPlFF~~~Gl~~d~~~l~-~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m---~~~G~~~li~~ 102 (451)
-.++-+.|...|+++....+. ...+|...++.++.-++.==+.+++.++.+. ....+..|+++ ++.|..+.+..
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l~~~l~~Gl~ll~~~Pggv~S~~~t 118 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--LPPELAVGLLLLGCCPGGVASNAMT 118 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHhHHheeeCCCchhHHHHH
Confidence 456667777889999887765 2346666666666666666667777787775 56777788775 56677775554
Q ss_pred HHH
Q 042567 103 LRW 105 (451)
Q Consensus 103 ~~~ 105 (451)
.++
T Consensus 119 ~lA 121 (319)
T COG0385 119 YLA 121 (319)
T ss_pred HHh
Confidence 443
No 150
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=39.17 E-value=3.1e+02 Score=27.24 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHhcCCCceeEeeEEEEcCC-CCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCC
Q 042567 228 STDRIMRAMTRYSKGSGAAVKVQPFKMISPY-NTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAP 306 (451)
Q Consensus 228 ~~~~i~~~f~~~~~~~~~~V~v~~~~~vs~~-~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~ap 306 (451)
....++..+++.++...-.+. +..+.+ ..-.+...+...++++|=||+-.-. . . .-..+.+....
T Consensus 72 ~~~~i~~gi~~~~~~~gy~~~----l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~--~---~-----~~~~~~l~~~~ 137 (333)
T COG1609 72 FFAEILKGIEEAAREAGYSLL----LANTDDDPEKEREYLETLLQKRVDGLILLGER--P---N-----DSLLELLAAAG 137 (333)
T ss_pred hHHHHHHHHHHHHHHcCCEEE----EECCCCCHHHHHHHHHHHHHcCCCEEEEecCC--C---C-----HHHHHHHHhcC
Confidence 355566666666554322221 111110 2223456677778888876655311 0 0 11245567779
Q ss_pred ccEEEeecCC
Q 042567 307 CTVGIFVDRG 316 (451)
Q Consensus 307 c~V~Ilvdr~ 316 (451)
+|+ |+++|.
T Consensus 138 ~P~-V~i~~~ 146 (333)
T COG1609 138 IPV-VVIDRS 146 (333)
T ss_pred CCE-EEEeCC
Confidence 998 667774
No 151
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=38.80 E-value=1.6e+02 Score=29.93 Aligned_cols=85 Identities=8% Similarity=0.091 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccC-----CCc-ccc---------cchhh
Q 042567 230 DRIMRAMTRYSKGSGAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHE-----NGE-FQS---------RTACV 294 (451)
Q Consensus 230 ~~i~~~f~~~~~~~~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~-----~G~-~e~---------~~~~~ 294 (451)
+++.+.++.-.+ .+..|-.+...+ ..+...|++.|++.++.+||.-+.+ .|. .+. +...+
T Consensus 13 ~~~~~lL~~A~~---~~yAVgAfNv~n--~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (357)
T TIGR01520 13 DDVHKLFQYAKE---NNFAIPAINCTS--SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAG 87 (357)
T ss_pred HHHHHHHHHHHH---CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHH
Confidence 444444444222 355666666655 6789999999999999999988765 110 111 01126
Q ss_pred hHHHHHHhhcCCccEEEeecCCCCC
Q 042567 295 QNFNKNVLSYAPCTVGIFVDRGLTY 319 (451)
Q Consensus 295 gs~~~~Vl~~apc~V~Ilvdr~~~~ 319 (451)
......+.+++++||++=-|++...
T Consensus 88 ~~~v~~~Ae~a~VPValHLDHg~~~ 112 (357)
T TIGR01520 88 AHHVHSIAEHYGVPVVLHTDHCAKK 112 (357)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCc
Confidence 7788889999999999988998654
No 152
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=38.36 E-value=3.2e+02 Score=26.70 Aligned_cols=82 Identities=18% Similarity=0.132 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHH--------hcCCCChhh--HHH-HHH
Q 042567 53 VSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWI--------IYKPIDVQT--FST-LVL 121 (451)
Q Consensus 53 ~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~--------~~g~i~~~~--~~~-~v~ 121 (451)
.+-..+++.+++.=+.+++....+++.++.-++.+|++. .++++++-. ..+ ...+. +.. +++
T Consensus 17 ~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvw------gl~I~~lDR~ivss~~~~~~-~~~~~~~~~~R~~l 89 (301)
T PF14362_consen 17 GIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVW------GLVIFNLDRFIVSSIRKSDG-SRKRLLQALPRLLL 89 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH------HHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHH
Confidence 344556667777778888888888888876666666543 333333221 111 01111 111 335
Q ss_pred HHHHHHHhHHHHHHHhcCcc
Q 042567 122 FNLVLTAIVTPLISIFYKPR 141 (451)
Q Consensus 122 ~~~vtt~i~~pl~~~~~~~~ 141 (451)
++++-.+++.|+...+|++.
T Consensus 90 AvliaivIs~pl~l~iF~~e 109 (301)
T PF14362_consen 90 AVLIAIVISEPLELKIFEKE 109 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555677899999999874
No 153
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=38.13 E-value=1.1e+02 Score=28.10 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=25.2
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
++++.|.||.|+--|+..+.+. +-++..+....+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G~~v~~l~~~~~ 34 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----GHEVVALLNLTP 34 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----CCEEEEEEEEec
Confidence 4689999999999999988883 445555555444
No 154
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=37.70 E-value=70 Score=31.17 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=39.7
Q ss_pred HHhhcCCccEEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEec
Q 042567 300 NVLSYAPCTVGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDL 364 (451)
Q Consensus 300 ~Vl~~apc~V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~ 364 (451)
+.+++....|+++.|+.... ...+.++|||.+ -.......++|...++.+-.+.+.-
T Consensus 171 k~L~k~~~~v~~l~Dq~~~~------~~gv~v~FfG~~--a~t~~g~a~LA~~~~apvvp~~~~R 227 (289)
T PRK08706 171 KQFRKSSAPFLYLPDQDFGR------NDSVFVDFFGIQ--TATITGLSRIAALANAKVIPAIPVR 227 (289)
T ss_pred HHHHhCCceEEEeCCCCCCC------CCCEEeccCCcc--chhhhHHHHHHHhcCCeEEEEEEEE
Confidence 33444557789999987532 146899999664 3445566788888888888777753
No 155
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=36.70 E-value=95 Score=27.46 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=44.4
Q ss_pred CchhHHHHhhhhhhhhhhhhHHHhhhccccccccccch--hH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 042567 12 PLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDW--KA-FVSLGMILVAAYLGKVWGSLLSLIWFKTSTRN 83 (451)
Q Consensus 12 ~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~--~~-~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~ 83 (451)
|+.-.+-.....+...+.+-+|...+|++.=...+... .. |....+..++.++.-++..++..+++++++-.
T Consensus 42 p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 42 PLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRINYAL 116 (154)
T ss_pred CcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 34444545566667788899999999999865444321 12 22233334444455566777777888887643
No 156
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=35.71 E-value=60 Score=33.88 Aligned_cols=57 Identities=11% Similarity=0.172 Sum_probs=30.9
Q ss_pred hcHHHHHHHHHhccCCCCCeEEEEEEeCC---hHHHHHHHHhcC---CCcEEEEcccCCCCcch
Q 042567 376 CLDDAVTKEFMVGNVGNTRVECHEMVAND---SKQLMDAIKKEK---DFELVIVDFAEGHMMSL 433 (451)
Q Consensus 376 ~~~~~~l~e~~~~~~~~~~v~y~e~~v~~---g~~~~~~i~~~~---~~DLiivG~~~~~~~~~ 433 (451)
..-.++++.+..++... .+.+....|-. ..++.++|+.+. ++|+|||||++|....|
T Consensus 141 aa~~D~~~~~~~r~p~~-~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL 203 (432)
T TIGR00237 141 AALADILHILKRRDPSL-KVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDL 203 (432)
T ss_pred HHHHHHHHHHHhhCCCc-eEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHh
Confidence 33445566555444111 22222333322 245566666554 48999999999874433
No 157
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=35.63 E-value=1.6e+02 Score=28.41 Aligned_cols=54 Identities=7% Similarity=-0.011 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHH
Q 042567 53 VSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWI 106 (451)
Q Consensus 53 ~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~ 106 (451)
++...+.++-=+++-..+..++++.|++.+++...+++|+.--...-.++....
T Consensus 151 Gl~Q~lAl~PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~ 204 (259)
T PF02673_consen 151 GLAQGLALIPGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKD 204 (259)
T ss_pred HHHHHcccCCCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666667799999999999999999999999999966655555555443
No 158
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=35.45 E-value=1.6e+02 Score=28.89 Aligned_cols=69 Identities=10% Similarity=0.119 Sum_probs=51.9
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCccc-ccchhhhHHHHHHhhcCCccEEEeecCCCC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQ-SRTACVQNFNKNVLSYAPCTVGIFVDRGLT 318 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e-~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~ 318 (451)
+..|-.+...+ ..+...|++.|++.++.+||.-..+ ... .+...+........+++++||++=-|++..
T Consensus 17 ~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~--~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~ 86 (284)
T PRK09195 17 GYAVPAFNIHN--LETMQVVVETAAELHSPVIIAGTPG--TFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHEK 86 (284)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcChh--HHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 45565666655 6789999999999999999977654 111 112356778889999999999998898854
No 159
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=35.32 E-value=3.2e+02 Score=24.26 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=21.8
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEEEEe
Q 042567 336 GPDDREAMALVSRISSHPGMSITIFRID 363 (451)
Q Consensus 336 g~ddreAl~~a~rma~~~~~~ltvv~v~ 363 (451)
.+.|.|+++.|++|++ .+.+++++-+-
T Consensus 18 ~~~~~e~l~~A~~l~~-~~~~v~~v~~G 44 (181)
T cd01985 18 NPLDLEAVEAALRLKE-YGGEVTALVIG 44 (181)
T ss_pred CHhhHHHHHHHHHHhh-cCCeEEEEEEC
Confidence 6788999999999988 56677777764
No 160
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=34.75 E-value=1.3e+02 Score=29.09 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=26.7
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENS 368 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~ 368 (451)
.++++|.||.|+-..|.++.+.... +.|+++.+.-.+
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~~~~----~~vif~DTg~~f 77 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKAFPD----FPVIFLDTGYHF 77 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHhcCC----CcEEEEeCCCcC
Confidence 4678888888887777777776666 777777665444
No 161
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=34.13 E-value=1.4e+02 Score=25.44 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=42.0
Q ss_pred CCchHhHHHHHHhCCCCEEEEeccC--CCcccccchhhhHHHHHHhhcCCccEEEeecCC
Q 042567 259 NTMHQSICKLVEDNLIPLVLLPFHE--NGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRG 316 (451)
Q Consensus 259 ~~~~~~I~~~A~e~~~dLIvlg~h~--~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~ 316 (451)
....+.+.+..++.+++.||+|.-. ||.........+.+.+++-++-+.||-. +|..
T Consensus 34 ~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~-~DEr 92 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVL-WDER 92 (130)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEE-EcCC
Confidence 3446889999999999999999765 7765433345677788887777899844 5543
No 162
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=34.01 E-value=1.7e+02 Score=28.54 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=66.7
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCccc-ccchhhhHHHHHHhhcCCccEEEeecCCCCCCC--C
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQ-SRTACVQNFNKNVLSYAPCTVGIFVDRGLTYYH--P 322 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e-~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~~--~ 322 (451)
+..|-.+...+ -++...+++.|++.++.+||--..+ ... .+-..+......+.+++++||++=-|++..... .
T Consensus 12 ~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~--~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ 87 (276)
T cd00947 12 GYAVGAFNINN--LETLKAILEAAEETRSPVILQISEG--AIKYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKR 87 (276)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcc--hhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Confidence 45666666655 5789999999999999999976654 111 122357788888999999999999999854210 0
Q ss_pred --CCcceeEEEEecCCcchHHHHHHHH---HHhcCCCeEE
Q 042567 323 --SNICYNVAVFFLGGPDDREAMALVS---RISSHPGMSI 357 (451)
Q Consensus 323 --~~~~~~I~v~f~Gg~ddreAl~~a~---rma~~~~~~l 357 (451)
...... .+...-.-+..|-++..+ ++|+..|+.|
T Consensus 88 ai~~GftS-VMiD~S~l~~eeNi~~t~~vv~~ah~~gv~V 126 (276)
T cd00947 88 AIRAGFSS-VMIDGSHLPFEENVAKTKEVVELAHAYGVSV 126 (276)
T ss_pred HHHhCCCE-EEeCCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 000023 344433335556565544 3444455554
No 163
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=32.78 E-value=1.9e+02 Score=29.18 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=52.8
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccC-CCcccccchhhhHHHHHHhhcCC-ccEEEeecCCCC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHE-NGEFQSRTACVQNFNKNVLSYAP-CTVGIFVDRGLT 318 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~-~G~~e~~~~~~gs~~~~Vl~~ap-c~V~Ilvdr~~~ 318 (451)
+..|-.+...+ ..+...|++.|++.++.+||.-+.+ -... +...+........++++ +||++=-|++..
T Consensus 15 ~yAV~AfN~~n--~e~~~aii~AAEe~~sPvIlq~s~~~~~~~--g~~~~~~~~~~~ae~~~~VPValHLDHg~~ 85 (347)
T TIGR01521 15 GYGVPAFNVNN--MEQMRAIMEAADKTDSPVILQASRGARSYA--GAPFLRHLILAAIEEYPHIPVVMHQDHGNS 85 (347)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhC--CHHHHHHHHHHHHHhCCCCcEEEECCCCCC
Confidence 55666666665 6789999999999999999988765 1111 22367788888899997 999998899854
No 164
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=32.59 E-value=2.2e+02 Score=28.81 Aligned_cols=71 Identities=7% Similarity=0.082 Sum_probs=51.6
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccC-----CCc-ccc--------cchhhhHHHHHHhhcCCccEEE
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHE-----NGE-FQS--------RTACVQNFNKNVLSYAPCTVGI 311 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~-----~G~-~e~--------~~~~~gs~~~~Vl~~apc~V~I 311 (451)
+..|-.+.... -.+...|++.|++.++.+||.-+.+ .|. .+. +...+........+++++||++
T Consensus 20 ~yAV~AfNv~n--~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVal 97 (350)
T PRK09197 20 GFALPAVNVVG--TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVIL 97 (350)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 55666666665 6789999999999999999977654 110 110 0001567788889999999999
Q ss_pred eecCCCC
Q 042567 312 FVDRGLT 318 (451)
Q Consensus 312 lvdr~~~ 318 (451)
=-|++..
T Consensus 98 HLDHg~~ 104 (350)
T PRK09197 98 HTDHCAK 104 (350)
T ss_pred ECCCCCC
Confidence 8899866
No 165
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=32.55 E-value=2e+02 Score=26.93 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHH
Q 042567 57 MILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISI 136 (451)
Q Consensus 57 ~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~ 136 (451)
.+++.+++|-+++-.+ .+++|++...+.-++++.++.|.=.--....+-+.|-+ ..-.|++..++|+++.|.++.+
T Consensus 139 ~VvitGi~Ga~~g~~l-lk~~~I~~~~A~GlalG~~sHaiGTa~a~e~~~~~ga~---sslam~l~gi~t~~~~P~~~~l 214 (215)
T PF04172_consen 139 FVVITGILGAVLGPPL-LKLLRIKDPVARGLALGTASHAIGTARALEIGEEAGAF---SSLAMILSGILTALLAPLLAPL 214 (215)
T ss_pred HHHHHhhHHHHhHHHH-HhHcccccHHHHHHHhccchHHHHHHHHHHcCchHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555444332 33445544444444444455554443333444333333 2234556667777777666554
No 166
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=32.24 E-value=3.8e+02 Score=24.10 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=25.5
Q ss_pred HHHhhhccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCchhHHHHHHH
Q 042567 32 FLFIRIGLLTDIFSIKD-WKAFVSLGMILVAAYLGKVWGSLLSL-IWFKTSTRNDLLFGCF 90 (451)
Q Consensus 32 lFF~~~Gl~~d~~~l~~-~~~~~~~~~~~~~~~~~K~~~~~~~~-~~~~~~~~~s~~~g~~ 90 (451)
+-....|++++++.+.+ ......+..-++.-++..=+.++..+ ++++.+.. +.+|++
T Consensus 6 ~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~--~~~Gl~ 64 (187)
T PF01758_consen 6 LMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPA--LALGLL 64 (187)
T ss_dssp HHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HH--HHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHHH
Confidence 34456788888887763 11222222323333444444455555 56554444 444444
No 167
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=31.92 E-value=42 Score=33.35 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=35.0
Q ss_pred EEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEe
Q 042567 309 VGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRID 363 (451)
Q Consensus 309 V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~ 363 (451)
|+++.|+..+.. ..++|||||-+ -.......+||+.+++.|..++-.
T Consensus 197 v~~lpDqd~~~~------~~vfvpFFg~~--a~T~t~~~~LA~~~~a~vip~~~~ 243 (308)
T COG1560 197 VGYLPDQDYGPG------ESVFVPFFGVP--AATTTGPAKLARLTGAAVVPVFPV 243 (308)
T ss_pred EEEecCcccCCC------CCeEeccCCCc--ccccchHHHHHHHhCCCEEEEEEE
Confidence 478888876532 57899999766 556677888998888877666654
No 168
>PRK06801 hypothetical protein; Provisional
Probab=31.87 E-value=2e+02 Score=28.18 Aligned_cols=108 Identities=11% Similarity=0.164 Sum_probs=69.3
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCccc-ccchhhhHHHHHHhhcCCccEEEeecCCCCCCCC--
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQ-SRTACVQNFNKNVLSYAPCTVGIFVDRGLTYYHP-- 322 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e-~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~~~-- 322 (451)
+..|-.+...+ -.+...|++.|++.++.+||.-..+ ... .+-..+........++++.||++=-|++.....-
T Consensus 17 ~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~--~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~ 92 (286)
T PRK06801 17 GYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEV--HFKYISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVR 92 (286)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcc--hhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Confidence 55666666655 6789999999999999999987765 111 1223678888999999999999988987542100
Q ss_pred -CCcceeEEEEecCCcchHHHHHHHHHH---hcCCCeEE
Q 042567 323 -SNICYNVAVFFLGGPDDREAMALVSRI---SSHPGMSI 357 (451)
Q Consensus 323 -~~~~~~I~v~f~Gg~ddreAl~~a~rm---a~~~~~~l 357 (451)
.+....-++...-.-+.+|-++..+++ |+..++.|
T Consensus 93 Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 93 ALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 000012223332233456777765444 66677654
No 169
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=31.21 E-value=40 Score=27.56 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCchHhHHHHHHhCCCCEEEEeccC
Q 042567 259 NTMHQSICKLVEDNLIPLVLLPFHE 283 (451)
Q Consensus 259 ~~~~~~I~~~A~e~~~dLIvlg~h~ 283 (451)
.+-+++|++.|+++++||+|+|-..
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSHH
T ss_pred CCCHHHHHHHHHHcCCCEEEECChH
Confidence 4557899999999999999999754
No 170
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=30.67 E-value=76 Score=27.13 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=26.0
Q ss_pred eEEEEcCCCCchHhHHHHHHhCCCCEEEEeccC
Q 042567 251 PFKMISPYNTMHQSICKLVEDNLIPLVLLPFHE 283 (451)
Q Consensus 251 ~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~ 283 (451)
-..++-|..+++..|.++|++.++|++|-|..+
T Consensus 73 lIYSiRPP~El~~~il~lA~~v~adlii~pL~~ 105 (127)
T PF03686_consen 73 LIYSIRPPPELQPPILELAKKVGADLIIRPLGG 105 (127)
T ss_dssp EEEEES--TTSHHHHHHHHHHHT-EEEEE-BTT
T ss_pred EEEEeCCChHHhHHHHHHHHHhCCCEEEECCCC
Confidence 357778899999999999999999999999965
No 171
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=30.41 E-value=1.1e+02 Score=30.22 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=35.7
Q ss_pred CccEEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEe
Q 042567 306 PCTVGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRID 363 (451)
Q Consensus 306 pc~V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~ 363 (451)
...|+++.|+..+.. ..+++||||.+-.- ...+.+||...++.+-.+...
T Consensus 192 g~~v~il~Dq~~~~~------~gv~v~FfG~~a~t--~~~~a~LA~~~~apvv~~~~~ 241 (305)
T TIGR02208 192 GESGYYLPDEDHGPE------QSVFVPFFATYKAT--LPVVGRLAKAGNAQVVPVFPG 241 (305)
T ss_pred CCeEEEeCCCCCCCC------CCeEeccCCCcchh--HHHHHHHHHhcCCeEEEEEEE
Confidence 357889999875321 46899999765433 234678998999998877764
No 172
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=30.39 E-value=2.2e+02 Score=28.28 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=52.2
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCccc-ccchhhhHHHHHHhhcCC-ccEEEeecCCCC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQ-SRTACVQNFNKNVLSYAP-CTVGIFVDRGLT 318 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e-~~~~~~gs~~~~Vl~~ap-c~V~Ilvdr~~~ 318 (451)
+..|-.+.... -.+...|++.|++.++.+||.-+.+ ... .+...+........++++ .||++=-|++..
T Consensus 16 ~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIlq~s~~--~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~ 86 (307)
T PRK05835 16 GYGVGAFNFVN--FEMLNAIFEAGNEENSPLFIQASEG--AIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTT 86 (307)
T ss_pred CceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCcc--HHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCCC
Confidence 55666666665 6789999999999999999987764 111 122356678888889997 999998898854
No 173
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=30.13 E-value=61 Score=32.09 Aligned_cols=94 Identities=16% Similarity=0.035 Sum_probs=55.9
Q ss_pred CCchhHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHH--H
Q 042567 11 PPLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLI-WFKTSTRNDLL--F 87 (451)
Q Consensus 11 ~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~-~~~~~~~~s~~--~ 87 (451)
.-+.++-.+.+..++..+.+|...+..-.+.+...... ..+. ........+++-++.+++.++ +++.+.++.-. +
T Consensus 28 ~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 105 (321)
T TIGR00946 28 GILDEEHASGINRFVINFALPLTIFHSISTTLADILQK-SQSP-VVLFLWGAFSGSYALIWLITKPLFKADYGKLSGFLL 105 (321)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence 35666778889999999999999998888766531110 1122 223333444555666677777 66766555433 3
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q 042567 88 GCFLNIKGIIELLVFLRWI 106 (451)
Q Consensus 88 g~~m~~~G~~~li~~~~~~ 106 (451)
+...+.-|-+.+-+....+
T Consensus 106 ~~~~~N~~~~GlPl~~~~~ 124 (321)
T TIGR00946 106 VSALPNTAFIGYPLLLSLF 124 (321)
T ss_pred HhhhccceeehHHHHHHHh
Confidence 3333444555555554444
No 174
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=29.44 E-value=2.3e+02 Score=28.09 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=28.8
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
+++++.+.||-|+--++.++.+.. +-+++.+++...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~---G~~v~av~vd~G 52 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAI---GDRLTCVFVDHG 52 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHh---CCCEEEEEEeCC
Confidence 588999999999998888876642 457889998754
No 175
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=29.18 E-value=2.2e+02 Score=28.85 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=53.1
Q ss_pred CceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCC-ccEEEeecCCCC
Q 042567 245 AAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAP-CTVGIFVDRGLT 318 (451)
Q Consensus 245 ~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~ap-c~V~Ilvdr~~~ 318 (451)
.+..|-.+.... ..+...|++.|++.++.+||.-..+.... .+...+....+...++++ +||++=-|++..
T Consensus 16 ~~yAVgAfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~-~g~~~~~~~~~~~a~~~~~VPValHLDHg~~ 87 (347)
T PRK09196 16 HGYGVPAFNVNN--LEQVQAIMEAADETDSPVILQASAGARKY-AGEPFLRHLILAAVEEYPHIPVVMHQDHGNS 87 (347)
T ss_pred cCceEEEeeeCC--HHHHHHHHHHHHHhCCCEEEECCccHhhh-CCHHHHHHHHHHHHHhCCCCcEEEECCCCCC
Confidence 355666676665 78899999999999999999877651100 122367788888888897 999998899854
No 176
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=28.98 E-value=2.5e+02 Score=28.47 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=52.8
Q ss_pred CceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCccc-ccchhhhHHHHHHhhcCC-ccEEEeecCCCC
Q 042567 245 AAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQ-SRTACVQNFNKNVLSYAP-CTVGIFVDRGLT 318 (451)
Q Consensus 245 ~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e-~~~~~~gs~~~~Vl~~ap-c~V~Ilvdr~~~ 318 (451)
++..|-.+.... -.+...|++.|++.++.+||.-+.+ ... .+-..+....+...++++ +||++=-|++..
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAEe~~sPvIlq~s~~--~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~ 87 (347)
T PRK13399 16 NGYGVPAFNVNN--MEQILAIMEAAEATDSPVILQASRG--ARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNS 87 (347)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEECCcc--hhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCC
Confidence 355666666665 6789999999999999999988765 111 122357778888888996 999998899864
No 177
>PRK09546 zntB zinc transporter; Reviewed
Probab=28.55 E-value=78 Score=31.47 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=18.8
Q ss_pred hhhhhhhhhhHHHh--hhccccc-ccccc
Q 042567 22 EVVIRNFFLPFLFI--RIGLLTD-IFSIK 47 (451)
Q Consensus 22 ~~~~~~~fiPlFF~--~~Gl~~d-~~~l~ 47 (451)
-++...+|+|+=|+ .-||.++ ++.+.
T Consensus 267 Ltilt~IflPlT~IaGiyGMNf~~mPel~ 295 (324)
T PRK09546 267 MSLMAMVFLPTTFLTGLFGVNLGGIPGGG 295 (324)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcC
Confidence 33556889997666 7899986 77664
No 178
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=28.34 E-value=1e+02 Score=30.26 Aligned_cols=52 Identities=15% Similarity=0.059 Sum_probs=35.3
Q ss_pred CCccEEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEe
Q 042567 305 APCTVGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRID 363 (451)
Q Consensus 305 apc~V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~ 363 (451)
....|+++.|+..+. . +.+.++|||.+ |-..-..+.++|...++.|-.+...
T Consensus 187 ~g~~v~il~Dq~~~~-----~-~g~~v~FfG~~-~a~~~~g~a~LA~~~~apvip~~~~ 238 (303)
T TIGR02207 187 NGERIWYAPDHDYGR-----K-SSVFVPFFAVP-DAATTTGTSILARLSKCAVVPFTPR 238 (303)
T ss_pred CCCeEEEeCCCCCCC-----C-CcEEeCCCCCC-cchhHHHHHHHHHHhCCeEEEEEEE
Confidence 445788999987432 1 47899999655 3334456667777778877766664
No 179
>PLN02285 methionyl-tRNA formyltransferase
Probab=28.05 E-value=1.3e+02 Score=30.24 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCcEEEEcccCCCCcchhhhhhHHHHhh-cCccCC
Q 042567 406 KQLMDAIKKEKDFELVIVDFAEGHMMSLLVIQSVESIKQ-GAKLLP 450 (451)
Q Consensus 406 ~~~~~~i~~~~~~DLiivG~~~~~~~~~~~gs~~e~i~~-~~~~~~ 450 (451)
.+..+.+++. +.|++++..-+..+..-++-.-.-.+.| |..+||
T Consensus 83 ~~~~~~l~~~-~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSLLP 127 (334)
T PLN02285 83 EDFLSALREL-QPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLP 127 (334)
T ss_pred HHHHHHHHhh-CCCEEEhhHhhhhcCHHHHhhccCCEEEEeccccc
Confidence 3446677777 8999999876555333333222222333 555555
No 180
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=27.80 E-value=2.3e+02 Score=27.77 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=66.5
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCccc-ccchhhhHHHHHHhhcCCccEEEeecCCCCCCCC--
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQ-SRTACVQNFNKNVLSYAPCTVGIFVDRGLTYYHP-- 322 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e-~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~~~-- 322 (451)
+..|-.+...+ -.+...|++.|++.++.+||.-..+ ... .+...+........+++..||++=-|++.....-
T Consensus 17 ~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIl~~~~~--~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~ 92 (283)
T PRK07998 17 HVLAGAFNTTN--LETTISILNAIERSGLPNFIQIAPT--NAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQ 92 (283)
T ss_pred CCEEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECcHh--HHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHH
Confidence 45555565554 5678999999999999999987654 111 1223577888899999999999988988542100
Q ss_pred --CCcceeEEEEecCCc-chHHHHHH---HHHHhcCCCeEE
Q 042567 323 --SNICYNVAVFFLGGP-DDREAMAL---VSRISSHPGMSI 357 (451)
Q Consensus 323 --~~~~~~I~v~f~Gg~-ddreAl~~---a~rma~~~~~~l 357 (451)
......|.+ -|+. +..|-++. +.++|...|+.|
T Consensus 93 Ai~~GftSVM~--DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 93 AVRAGFTSVMI--DGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred HHHcCCCEEEE--eCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 001134322 3343 33344444 455666677665
No 181
>PRK14561 hypothetical protein; Provisional
Probab=27.77 E-value=2.9e+02 Score=25.17 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=23.5
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
++++.+.||.|+--.+..+.+. ..+.++++..+
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~~g 34 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVNFG 34 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEecC
Confidence 6889999999998887776554 23456666543
No 182
>PRK10711 hypothetical protein; Provisional
Probab=27.76 E-value=4.5e+02 Score=24.97 Aligned_cols=59 Identities=8% Similarity=-0.077 Sum_probs=29.6
Q ss_pred HHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHH
Q 042567 75 IWFKTSTRNDLLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISI 136 (451)
Q Consensus 75 ~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~ 136 (451)
++++.+...+.-++++.++.|.=.--....+-..|.++ --.|++..++|+++.|.+..+
T Consensus 167 k~~rI~~~~A~G~alG~aaHaiGTAkA~e~~~~~Ga~s---sLam~l~Gi~ta~~~P~~~~l 225 (231)
T PRK10711 167 NAMRIRTKAARGLAMGTASHALGTARCAELDYQEGAFS---SLALVICGIITSLIAPFLFPL 225 (231)
T ss_pred HHcCCCCHHHHHHHHhHhhHHHHHHHHHHcCcHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33455444444455555555544444444444444332 223455667766666666554
No 183
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=27.47 E-value=3e+02 Score=26.69 Aligned_cols=53 Identities=8% Similarity=0.001 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHH
Q 042567 53 VSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRW 105 (451)
Q Consensus 53 ~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~ 105 (451)
++.+.+.++-=+++-..+..++++.|++..++...+++|+.--.+.-.++...
T Consensus 155 Gl~Q~lAliPGiSRSG~TI~~~l~~G~~r~~Aa~fSFLlsiPai~gA~~l~~~ 207 (268)
T PRK00281 155 GLAQCLALIPGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMLGASLLDLL 207 (268)
T ss_pred HHHHHHHhCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666778889999999999999999999999998776666665553
No 184
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=27.47 E-value=2.6e+02 Score=28.32 Aligned_cols=71 Identities=7% Similarity=0.075 Sum_probs=51.2
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccC--C--Cccccc----------chhhhHHHHHHhhcCCccEEE
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHE--N--GEFQSR----------TACVQNFNKNVLSYAPCTVGI 311 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~--~--G~~e~~----------~~~~gs~~~~Vl~~apc~V~I 311 (451)
+..|-.+-... ..+...|++.|++.++..||.-+.+ + +..+.. ...+........+++++||++
T Consensus 15 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVal 92 (345)
T cd00946 15 GFAIPAVNCTS--SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVL 92 (345)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 45555555554 6778999999999999999977765 1 111000 004677888899999999999
Q ss_pred eecCCCC
Q 042567 312 FVDRGLT 318 (451)
Q Consensus 312 lvdr~~~ 318 (451)
=-|++..
T Consensus 93 HLDHg~~ 99 (345)
T cd00946 93 HTDHCAK 99 (345)
T ss_pred ECCCCCC
Confidence 8898865
No 185
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=27.41 E-value=1.1e+02 Score=29.13 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=28.5
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
.++++.|.||.|+--++.++.+. +.++..+++..+
T Consensus 13 ~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~ 47 (252)
T TIGR00268 13 KKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSP 47 (252)
T ss_pred CCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCC
Confidence 57899999999999999888775 556777887654
No 186
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.39 E-value=5e+02 Score=24.05 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHHHHhcCCCceeEeeEEEEcCCCCc--hHhHHHHHHhCCCCEEEE-eccCCCcccccchhhhHHHHHHhh
Q 042567 227 NSTDRIMRAMTRYSKGSGAAVKVQPFKMISPYNTM--HQSICKLVEDNLIPLVLL-PFHENGEFQSRTACVQNFNKNVLS 303 (451)
Q Consensus 227 ~~~~~i~~~f~~~~~~~~~~V~v~~~~~vs~~~~~--~~~I~~~A~e~~~dLIvl-g~h~~G~~e~~~~~~gs~~~~Vl~ 303 (451)
.....+.+.+++.+++. +..+. +..+ ..+. .....+...+.++|=||+ |...+ . .. ..+.++
T Consensus 12 ~~~~~~~~~i~~~a~~~--g~~~~--~~~~-~~~~~~~~~~i~~l~~~~vdgii~~~~~~~-----~----~~-~~~~~~ 76 (269)
T cd06281 12 PLLAQLFSGAEDRLRAA--GYSLL--IANS-LNDPERELEILRSFEQRRMDGIIIAPGDER-----D----PE-LVDALA 76 (269)
T ss_pred ccHHHHHHHHHHHHHHc--CCEEE--EEeC-CCChHHHHHHHHHHHHcCCCEEEEecCCCC-----c----HH-HHHHHH
Confidence 44566667777766653 33322 1112 2333 335566677788886665 32111 0 01 123456
Q ss_pred cCCccEEEeecCC
Q 042567 304 YAPCTVGIFVDRG 316 (451)
Q Consensus 304 ~apc~V~Ilvdr~ 316 (451)
++..|| |++++.
T Consensus 77 ~~~ipv-V~i~~~ 88 (269)
T cd06281 77 SLDLPI-VLLDRD 88 (269)
T ss_pred hCCCCE-EEEecc
Confidence 678898 556765
No 187
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=27.11 E-value=1.5e+02 Score=28.44 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=31.0
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCC--CeEEEEEEEec
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHP--GMSITIFRIDL 364 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~--~~~ltvv~v~~ 364 (451)
.+|+|.+.||.|+--.+.++.++.+.. +.++..+++..
T Consensus 30 ~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 30 DRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecC
Confidence 689999999999988888888887653 46788888764
No 188
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=26.77 E-value=5.8e+02 Score=25.56 Aligned_cols=122 Identities=7% Similarity=0.078 Sum_probs=63.8
Q ss_pred CcccccchhhhHHHHHHhhcCCccEEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEec
Q 042567 285 GEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDL 364 (451)
Q Consensus 285 G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~ 364 (451)
|.++-+-.+...+.+.|-+..+-||++=+. .. . ..-||.+..+++++++++.+. + +..+++..
T Consensus 186 GslenR~Rf~~eii~~ir~~~~~~v~vRis-~~----------d---~~~~G~~~~e~~~i~~~l~~~-g--vD~i~vs~ 248 (337)
T PRK13523 186 GSPENRYRFLREIIDAVKEVWDGPLFVRIS-AS----------D---YHPGGLTVQDYVQYAKWMKEQ-G--VDLIDVSS 248 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCeEEEec-cc----------c---cCCCCCCHHHHHHHHHHHHHc-C--CCEEEeCC
Confidence 344433346667888887776666655111 10 0 123688889999999999764 4 45555543
Q ss_pred CCCCc-cCchhhhcHHHHHHHHHhccCCCCCeEEEEEEeCChHHHHHHHHhcCCCcEEEEcccC
Q 042567 365 LENSV-ESENDRCLDDAVTKEFMVGNVGNTRVECHEMVANDSKQLMDAIKKEKDFELVIVDFAE 427 (451)
Q Consensus 365 ~~~~~-~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~DLiivG~~~ 427 (451)
..... ..........++.++++... +-.|..+ -.+.+..+..++|++- .+|+|.+||.-
T Consensus 249 g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~-G~i~~~~~a~~~l~~g-~~D~V~~gR~~ 308 (337)
T PRK13523 249 GAVVPARIDVYPGYQVPFAEHIREHA--NIATGAV-GLITSGAQAEEILQNN-RADLIFIGREL 308 (337)
T ss_pred CCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEe-CCCCCHHHHHHHHHcC-CCChHHhhHHH
Confidence 21100 00001111334566666433 2223322 1223444444555554 69999999963
No 189
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=26.69 E-value=1.1e+02 Score=27.32 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=29.2
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCC
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLE 366 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~ 366 (451)
++++.|.||.|+--++.++.+. +.+++.++|..+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----GIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----CCeEEEEEEeCCC
Confidence 4789999999999999888773 7789999997653
No 190
>PTZ00370 STEVOR; Provisional
Probab=26.60 E-value=2e+02 Score=28.16 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCcccc
Q 042567 98 ELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRKR 143 (451)
Q Consensus 98 ~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~~ 143 (451)
+++....+...+++.+--.+++|+.++. ++.-.+--|+|+++++
T Consensus 241 DlagtAAtaAsaaF~Pygiaalvllil~--vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 241 GLAGTAASAASSAFYPYGIAALVLLILA--VVLIILYIWLYRRRKN 284 (296)
T ss_pred cccchHHHHHHHhhcccHHHHHHHHHHH--HHHHHHHHHHHHhhcc
Confidence 4555556667778877766766655544 4445666778876654
No 191
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.57 E-value=4.4e+02 Score=23.09 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=42.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCchhHHHHHHHhhhhHHHHHHHHHHHHhcCCCC
Q 042567 42 DIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWF---------KTSTRNDLLFGCFLNIKGIIELLVFLRWIIYKPID 112 (451)
Q Consensus 42 d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~---------~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~ 112 (451)
|+..+.....++..++-.+.+=+.|+..-.+-.+-. |||...|-.+.. ....+|++.|+ |
T Consensus 3 ~~~~if~n~~llsal~a~~~AQvIKv~I~~~~~rk~~~~~~~sTGGMPSsHSA~VtA----------Lat~ial~~G~-d 71 (153)
T COG1963 3 DLMEIFTNTPLLSALVAILLAQVIKVLIELIRTRKLNVTLLFSTGGMPSSHSALVTA----------LATSIALTEGL-D 71 (153)
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeecCCCCchHHHHHHH----------HHHHHHHHhcC-C
Confidence 455555444444555666677788988877766543 455555544333 34567788776 5
Q ss_pred hhhHHHHHHHHHH
Q 042567 113 VQTFSTLVLFNLV 125 (451)
Q Consensus 113 ~~~~~~~v~~~~v 125 (451)
...|++-.+.+++
T Consensus 72 S~lFaiA~vfaiI 84 (153)
T COG1963 72 SPLFAIAAVFAII 84 (153)
T ss_pred CchHHHHHHHHHH
Confidence 5556554444444
No 192
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=26.45 E-value=4.2e+02 Score=25.16 Aligned_cols=61 Identities=10% Similarity=0.119 Sum_probs=42.4
Q ss_pred eeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecC
Q 042567 250 QPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDR 315 (451)
Q Consensus 250 ~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr 315 (451)
...+.++|.....++..+.+.+.++|.|++|-. +|. +......+.+++= +.+.||.++...
T Consensus 9 ~h~~liDP~k~~~~~~~~~~~~~gtdai~vGGS-~~v---t~~~~~~~v~~ik-~~~lPvilfp~~ 69 (232)
T PRK04169 9 LHVTLLDPDKPLPDEALEAICESGTDAIIVGGS-DGV---TEENVDELVKAIK-EYDLPVILFPGN 69 (232)
T ss_pred eEEEEECCCCCCCHHHHHHHHhcCCCEEEEcCC-Ccc---chHHHHHHHHHHh-cCCCCEEEeCCC
Confidence 356888998888888778888999999999954 233 2223445555554 488898776433
No 193
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=26.31 E-value=6.7e+02 Score=25.10 Aligned_cols=103 Identities=10% Similarity=-0.016 Sum_probs=49.9
Q ss_pred hHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhh
Q 042567 15 SALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIK 94 (451)
Q Consensus 15 ~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~ 94 (451)
..+.+-++.++ +..+|+-.+..|+.+..........+......+++-++.--+.++...++++++... ...+++..-
T Consensus 269 ~~i~~~~~~lg-~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~--~~~~~~~~~ 345 (385)
T PF03547_consen 269 SFITDSLSYLG-AAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLGLDGDM--ARVLILQAA 345 (385)
T ss_pred hHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHhcc
Confidence 56777777775 788999999999888754433111222211122222222223344455555554332 222333233
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHH
Q 042567 95 GIIELLVFLRWIIYKPIDVQTFSTLVL 121 (451)
Q Consensus 95 G~~~li~~~~~~~~g~i~~~~~~~~v~ 121 (451)
.-.....+.+....|. +++..+.+++
T Consensus 346 ~P~a~~~~~~a~~~~~-~~~~~s~~~~ 371 (385)
T PF03547_consen 346 MPTAINSFVIASLYGL-DEEEASSIVF 371 (385)
T ss_pred CCchHHHHHHHHHhCC-CHHHHHHHHH
Confidence 3334444444455555 3344444433
No 194
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=26.22 E-value=4.5e+02 Score=23.11 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=55.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCCCc
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGAA 246 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 246 (451)
||+++++.--....++.++...... .+..++++|+-. +.. .....-.+.++++++.. +
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~--~~~~v~~v~id~--~~~----------------~~~~~~~~~~~~~~~~~--~ 58 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR--LGLRLVAVHVDH--GLR----------------PESDEEAAFVADLCAKL--G 58 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH--cCCcEEEEEecC--CCC----------------chHHHHHHHHHHHHHHc--C
Confidence 5889999888888888888877643 245689998831 110 01122234444554432 3
Q ss_pred eeEeeEE-EEcCCC-C---------chHhHHHHHHhCCCCEEEEeccC
Q 042567 247 VKVQPFK-MISPYN-T---------MHQSICKLVEDNLIPLVLLPFHE 283 (451)
Q Consensus 247 V~v~~~~-~vs~~~-~---------~~~~I~~~A~e~~~dLIvlg~h~ 283 (451)
++..... ...+.. . +.....+.|++.+++.|+.|-|.
T Consensus 59 i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~ 106 (185)
T cd01992 59 IPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHA 106 (185)
T ss_pred CcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 4333321 111111 1 11345567889999999999886
No 195
>PRK04148 hypothetical protein; Provisional
Probab=26.14 E-value=84 Score=27.14 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=29.2
Q ss_pred EEEEcCCCCchHhHHHHHHhCCCCEEEEeccC
Q 042567 252 FKMISPYNTMHQSICKLVEDNLIPLVLLPFHE 283 (451)
Q Consensus 252 ~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~ 283 (451)
..++-|..+++..|.++|++.++|++|-|..+
T Consensus 81 iysirpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 81 IYSIRPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 56677889999999999999999999999976
No 196
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=26.03 E-value=5.3e+02 Score=24.37 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=23.2
Q ss_pred CchhHHHHHHHh--hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHH
Q 042567 80 STRNDLLFGCFL--NIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLI 134 (451)
Q Consensus 80 ~~~~s~~~g~~m--~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~ 134 (451)
+.+|..+-|+.| ++.|.=.--....+.+.|-++ --.|++..++|+++.|.+.
T Consensus 169 ~i~~~~A~GlalG~aaHaiGTa~a~e~~~~~Ga~s---sLam~l~gi~ta~l~P~l~ 222 (226)
T TIGR00659 169 RVKNEIARGLLLGTSSHGLGTARCFELDSVAGAIS---SLSMVLCGIITSWIAPFLF 222 (226)
T ss_pred CCCcHHHHHHHHhHHHHHHHHHHHHHcCchHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344555555544 444433333333333333321 1234556666656555444
No 197
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=26.03 E-value=1e+02 Score=25.95 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=27.5
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEE
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFR 361 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~ 361 (451)
+||++...|+....++..++.+|.+. |.+++++-
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVVL 34 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEEE
Confidence 58999999999999999999999988 77765543
No 198
>PRK08025 lipid A biosynthesis palmitoleoyl acyltransferase; Reviewed
Probab=25.76 E-value=1.3e+02 Score=29.64 Aligned_cols=51 Identities=10% Similarity=-0.063 Sum_probs=34.7
Q ss_pred CccEEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEe
Q 042567 306 PCTVGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRID 363 (451)
Q Consensus 306 pc~V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~ 363 (451)
...|+++.|+..+.. ..+.++|||.+ .-.....+.++|...++.|-.+...
T Consensus 192 g~~v~il~DQ~~~~~------~gv~v~FfG~~-~a~t~~g~~~LA~~~~apvvp~~~~ 242 (305)
T PRK08025 192 GEAVWFAPDQDYGPK------GSSFAPFFAVE-NVATTNGTYVLSRLSGAAMLTVTMV 242 (305)
T ss_pred CCeEEEeCCCCCCCC------CCeEeCCCCCc-chhHHHHHHHHHHhhCCeEEEEEEE
Confidence 357889999875421 46899999543 3344556667777778887766663
No 199
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=25.67 E-value=5.2e+02 Score=24.57 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 042567 118 TLVLFNLVLTAIVTPLIS 135 (451)
Q Consensus 118 ~~v~~~~vtt~i~~pl~~ 135 (451)
.|++..++|+++.|.+..
T Consensus 212 am~l~gi~tail~P~l~~ 229 (232)
T PRK04288 212 AVVVVGVVTVAVVPVFVP 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566676666655544
No 200
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=25.45 E-value=3.2e+02 Score=26.85 Aligned_cols=69 Identities=9% Similarity=0.152 Sum_probs=52.0
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccc--cchhhhHHHHHHhhcC--CccEEEeecCCCC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQS--RTACVQNFNKNVLSYA--PCTVGIFVDRGLT 318 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~--~~~~~gs~~~~Vl~~a--pc~V~Ilvdr~~~ 318 (451)
+..|-.+...+ ..+...|++.|++.++.+||.-..+ .... +-..+........+++ .+||.+=-|++..
T Consensus 17 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~~~~--~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~ 89 (288)
T TIGR00167 17 GYAIPAFNINN--LETINAVLEAAAEEKSPVIIQFSNG--AAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGAS 89 (288)
T ss_pred CceEEEEEECC--HHHHHHHHHHHHHHCCCEEEECCcc--hhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCC
Confidence 45566666665 6788999999999999999987654 1111 2235777888888999 8999998899854
No 201
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.19 E-value=1.4e+02 Score=29.46 Aligned_cols=52 Identities=10% Similarity=-0.035 Sum_probs=35.0
Q ss_pred CCccEEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEe
Q 042567 305 APCTVGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRID 363 (451)
Q Consensus 305 apc~V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~ 363 (451)
....|+++.|+..+.. ..+.++||| .+.-.....+.+||...++.|-.+...
T Consensus 193 ~g~~v~il~Dq~~~~~------~gv~v~FfG-~~~a~t~~g~a~LA~~~~apvvp~~~~ 244 (309)
T PRK06860 193 KGERIWYAPDHDYGPR------SSVFVPFFA-VEQAATTTGTWMLARMSKAAVIPFVPR 244 (309)
T ss_pred cCCeEEEeCCCCCCCC------CCEEecCCC-CCchhhHHHHHHHHHHhCCeEEEEEEE
Confidence 3357889999875421 478999995 333344555667787888887766664
No 202
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=24.86 E-value=1.4e+02 Score=29.51 Aligned_cols=51 Identities=10% Similarity=-0.093 Sum_probs=36.0
Q ss_pred CCccEEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEe
Q 042567 305 APCTVGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRID 363 (451)
Q Consensus 305 apc~V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~ 363 (451)
....|+++.|+..+.. ..+.++|||.+-. ....+.+||...++.|-.++..
T Consensus 200 ~g~~v~il~Dq~~~~~------~gv~v~FfG~~a~--t~~g~a~LA~k~~apvvp~~~~ 250 (314)
T PRK08943 200 QGYWGYYLPDEDHGPE------HSVFVDFFATYKA--TLPGIGRLAKVCRARVVPLFPV 250 (314)
T ss_pred CCCeEEEeCCCCCCCC------CCEEeCCCCCchh--HhHHHHHHHHHhCCeEEEEEEE
Confidence 3458889999875321 4789999976432 3336778888889888777764
No 203
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=24.70 E-value=3.3e+02 Score=26.21 Aligned_cols=52 Identities=6% Similarity=0.026 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHH
Q 042567 53 VSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLR 104 (451)
Q Consensus 53 ~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~ 104 (451)
++.+.+.++-=+++-..|..++++.|++.+++...+++|+.--.+.-.++..
T Consensus 151 Gl~Q~~AliPGiSRSG~TI~a~l~~G~~r~~Aa~fSFllsiP~i~gA~~l~l 202 (255)
T TIGR00753 151 GLFQCLALIPGVSRSGSTISGGLFIGLNRKAAAEFSFLLAIPIMFGAGLLSL 202 (255)
T ss_pred HHHHHHHhccCCCCchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556667888899999999999999999999999776666555554
No 204
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=24.70 E-value=2.2e+02 Score=28.94 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=30.4
Q ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 326 CYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 326 ~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
..++++.+.||.|+--|+.++.+. |.+++.++|..+
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~kr----G~~V~av~~~~~ 207 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMKR----GCRVVAVHFFNE 207 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHHc----CCeEEEEEEeCC
Confidence 379999999999999998888552 778999999854
No 205
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=24.70 E-value=1.4e+02 Score=21.65 Aligned_cols=52 Identities=8% Similarity=0.025 Sum_probs=27.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCChhh--HHHHHHHHHHHHHhHHHHHHHhc
Q 042567 87 FGCFLNIKGIIELLVFLRWIIYKPIDVQT--FSTLVLFNLVLTAIVTPLISIFY 138 (451)
Q Consensus 87 ~g~~m~~~G~~~li~~~~~~~~g~i~~~~--~~~~v~~~~vtt~i~~pl~~~~~ 138 (451)
++++|+.-=.+-....|.|...+.+..-. |..-...+....++..|+++.+.
T Consensus 3 ms~~Ms~imS~v~t~~n~G~~~~f~~~Wl~a~~~a~~vAfp~~l~v~P~v~kl~ 56 (60)
T PF11391_consen 3 MSFMMSLIMSFVMTLLNVGFSDGFFSRWLKAWLIAWPVAFPISLIVAPLVRKLV 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445444333444556777666555422 33333344445667788877653
No 206
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=24.43 E-value=1.3e+02 Score=29.67 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=37.0
Q ss_pred CCccEEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEe
Q 042567 305 APCTVGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRID 363 (451)
Q Consensus 305 apc~V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~ 363 (451)
....|+++.|+..... ..+.++|||.+- .....+.+||...++.|-.+...
T Consensus 192 ~g~~v~il~Dq~~~~~------~gv~v~FfG~~a--~t~~g~a~LA~~~~apvvp~~~~ 242 (310)
T PRK05646 192 AGRAIWYAPDQDYGAK------QSIFVPLFGIPA--ATVTATTKFARLGRARVIPFTQK 242 (310)
T ss_pred CCCeEEEeCCCCCCCC------CCEEecCCCCcc--hhhhHHHHHHHhhCCcEEEEEEE
Confidence 5678999999875321 468999997653 34455778888888888777775
No 207
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=24.40 E-value=7e+02 Score=24.66 Aligned_cols=111 Identities=13% Similarity=0.096 Sum_probs=52.5
Q ss_pred hhhhhHHHhhhccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHH--HHHHHHH
Q 042567 27 NFFLPFLFIRIGLLTDIFSIKD-WKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGI--IELLVFL 103 (451)
Q Consensus 27 ~~fiPlFF~~~Gl~~d~~~l~~-~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~--~~li~~~ 103 (451)
.+.+.+-|...|++++...+.+ ..+|...+...+..++.==+.++...+.++-...+.+..|+...+--- ++-.+..
T Consensus 34 ~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~ 113 (313)
T PF13593_consen 34 KYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVVL 113 (313)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHHH
Confidence 3447778888999999988763 334543333332222222222334444443223344666665433222 2223333
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhc
Q 042567 104 RWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFY 138 (451)
Q Consensus 104 ~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~ 138 (451)
.....|=..-..+... +..++..+++|.++..+.
T Consensus 114 T~~AgGN~a~Al~~~~-~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 114 TRLAGGNVALALFNAV-LSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHcCCCHHHHHHHHH-HHhhhhHhHHHHHHHHHh
Confidence 3444454443444433 333333344555555433
No 208
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=24.22 E-value=2.8e+02 Score=20.70 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHh
Q 042567 70 SLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWII 107 (451)
Q Consensus 70 ~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~ 107 (451)
+-+.+.+++.+..++..++++++.-..+==.++|.++|
T Consensus 22 ~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~~FD 59 (67)
T PF05232_consen 22 VPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNWLFD 59 (67)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888877777766554444444454444
No 209
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.76 E-value=2.9e+02 Score=25.97 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=35.0
Q ss_pred EEEecCCc---chHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHh
Q 042567 330 AVFFLGGP---DDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMV 387 (451)
Q Consensus 330 ~v~f~Gg~---ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~ 387 (451)
+|.|.|+| +..+-..+|+||-++ ++.+.+++|-+..+ +.+...+|++....
T Consensus 110 iVvFvGSpi~e~ekeLv~~akrlkk~-~Vaidii~FGE~~~------~~e~l~~fida~N~ 163 (259)
T KOG2884|consen 110 IVVFVGSPIEESEKELVKLAKRLKKN-KVAIDIINFGEAEN------NTEKLFEFIDALNG 163 (259)
T ss_pred EEEEecCcchhhHHHHHHHHHHHHhc-CeeEEEEEeccccc------cHHHHHHHHHHhcC
Confidence 68899988 234667788999877 99999999964321 23445566665543
No 210
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=23.74 E-value=6.5e+02 Score=24.11 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=58.8
Q ss_pred cceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCC
Q 042567 165 ELRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSG 244 (451)
Q Consensus 165 ~~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 244 (451)
..+|+|+++.-.....++.++..+... ..+.++|+-.-- + ..++.-.+..+.+++...
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~----~~~~a~~Vd~~~-~-----------------~~~~~~~~~~~~~~~~~~ 78 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR----IEVEAVHVDHGL-R-----------------GYSDQEAELVEKLCEKLG 78 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC----ceEEEEEecCCC-C-----------------CccchHHHHHHHHHHHhC
Confidence 569999999999999999999988843 778999983211 1 111333344455555431
Q ss_pred CceeEeeEEEEcCCCC----chHh---------HHHHHHhCCCCEEEEeccCCCc
Q 042567 245 AAVKVQPFKMISPYNT----MHQS---------ICKLVEDNLIPLVLLPFHENGE 286 (451)
Q Consensus 245 ~~V~v~~~~~vs~~~~----~~~~---------I~~~A~e~~~dLIvlg~h~~G~ 286 (451)
-...+...+....... -... ..+.|.+.++|.|+.|-|.|..
T Consensus 79 ~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~ 133 (298)
T COG0037 79 IPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQ 133 (298)
T ss_pred CceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHH
Confidence 1222222222211111 1222 3345668999999999987443
No 211
>PRK04972 putative transporter; Provisional
Probab=23.69 E-value=7.6e+02 Score=26.72 Aligned_cols=123 Identities=7% Similarity=-0.142 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhHHHhhhccccccccccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHH
Q 042567 20 KSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKA-FVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIE 98 (451)
Q Consensus 20 ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~-~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~ 98 (451)
++.+....+++-+|...+|++.=...+..... =+...++.++.++.=.+.+++..+++|+++-.+.-+-.+--+ -...
T Consensus 56 ~~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T-~tp~ 134 (558)
T PRK04972 56 SINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMT-STPV 134 (558)
T ss_pred CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhcccc-CcHH
Q ss_pred HHHHHHHHhcCCCC-----------hhhHHHHHHHHHHHHHhHHHHHHHhcCcccc
Q 042567 99 LLVFLRWIIYKPID-----------VQTFSTLVLFNLVLTAIVTPLISIFYKPRKR 143 (451)
Q Consensus 99 li~~~~~~~~g~i~-----------~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~~ 143 (451)
+..++-..+....+ .--|++.-...++..++...++.++++...+
T Consensus 135 l~~a~~~~~~~~~~~~~~~~~~~~~~vgYa~~y~~g~i~~i~~~~~~p~l~ridl~ 190 (558)
T PRK04972 135 LVGAGDTLRHSGAESRQLSLALDNLSLGYALTYLIGLVSLIVGARYLPKLQHQDLQ 190 (558)
T ss_pred HHHHHHHHhccCccccchhcccCccchhHHhHHHHHHHHHHHHHHHHHHHhCCCHH
No 212
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=23.68 E-value=8.4e+02 Score=26.67 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=71.8
Q ss_pred hhHHHHHHhhcCCccEEEeecCCCCCCCC---------------CCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEE
Q 042567 294 VQNFNKNVLSYAPCTVGIFVDRGLTYYHP---------------SNICYNVAVFFLGGPDDREAMALVSRISSHPGMSIT 358 (451)
Q Consensus 294 ~gs~~~~Vl~~apc~V~Ilvdr~~~~~~~---------------~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~lt 358 (451)
++.....-+..--+|++|=..||...... .....++++.-+ |.--..|++.|.++.++ |+.+|
T Consensus 454 l~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~~~~~~~Gk~~i~~~G~~vail~~-G~~~~~al~vae~L~~~-Gi~~T 531 (627)
T COG1154 454 LRQMLYTALAQDDGPVAIRYPRGNGVGVILTPELEPLEIGKGELLKEGEKVAILAF-GTMLPEALKVAEKLNAY-GISVT 531 (627)
T ss_pred HHHHHHHHHhcCCCCeEEEecCCCCCCCCcccccccccccceEEEecCCcEEEEec-chhhHHHHHHHHHHHhc-CCCcE
Confidence 34444444555557777877777432110 011157777777 77788999999999954 88888
Q ss_pred EEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEEEEe-CCh--HHHHHHHHhcC-CCcEEEEcc
Q 042567 359 IFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHEMVA-NDS--KQLMDAIKKEK-DFELVIVDF 425 (451)
Q Consensus 359 vv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v-~~g--~~~~~~i~~~~-~~DLiivG~ 425 (451)
|+.-.- .+-+|++++.++..++ +.+.-.|+.+ ..| +.+.+++.+.. .-.+.-+|-
T Consensus 532 Vvd~rf---------vkPlD~~ll~~La~~h---~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lgl 590 (627)
T COG1154 532 VVDPRF---------VKPLDEALLLELAKSH---DLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGL 590 (627)
T ss_pred EEcCee---------cCCCCHHHHHHHHhhc---CeEEEEecCcccccHHHHHHHHHHhcCCCCceEEecC
Confidence 875321 2336788888887655 3343444444 333 66777777774 355555554
No 213
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=23.48 E-value=1.4e+02 Score=29.45 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=19.6
Q ss_pred HHHhhhhhhhhhhhhHHHh--hhccccc-ccccc
Q 042567 17 LVEKSEVVIRNFFLPFLFI--RIGLLTD-IFSIK 47 (451)
Q Consensus 17 l~~ki~~~~~~~fiPlFF~--~~Gl~~d-~~~l~ 47 (451)
.+.++..+ ..+|+|+=|+ .-||.++ ++.+.
T Consensus 257 ~mk~LTvv-t~IflP~t~IaGiyGMNf~~mP~l~ 289 (318)
T TIGR00383 257 IMKILTVV-STIFIPLTFIAGIYGMNFKFMPELN 289 (318)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhCCcccCcccc
Confidence 44444444 5888888777 6788876 55554
No 214
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=23.13 E-value=7.4e+02 Score=25.75 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=68.4
Q ss_pred hhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHh
Q 042567 28 FFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWII 107 (451)
Q Consensus 28 ~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~ 107 (451)
.-.|+|+...| +..-..+.. . ..-++.+.+++++-++.+|++-...+-...+- .-=+.=-.||.+|==++|+|-.
T Consensus 233 ~A~pfF~fLLg-~c~k~k~~~--~-f~ri~~ia~~Vv~TF~iiw~P~~~~~~~~~qv-l~RlFPf~RGlfEDKVANfWCt 307 (510)
T KOG2575|consen 233 HALPFFAFLLG-SCLKPKLFN--S-FARIIKIALAVVGTFVIIWLPFLLSGDTALQV-LHRLFPFARGLFEDKVANFWCT 307 (510)
T ss_pred hchHHHHHHHH-HHhcccchH--H-HHHHHHHHHHHHHHHHHHHHHHHhccchHHHH-HHHhCchhcchhhhhhhhhhhh
Confidence 34677877888 665555542 1 22345566677788888888877766222222 1122235799999999999875
Q ss_pred cC-------CCChhhHHHHHHHHHHHHHhHHHHHHHhcCcccchhcc
Q 042567 108 YK-------PIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRKRLDRI 147 (451)
Q Consensus 108 ~g-------~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~~~~~~ 147 (451)
.+ +..+++.-.+.+...+. ...|-.+..+.+|+++-..+
T Consensus 308 ~n~~~K~k~~ft~q~~~~iSl~~Tli-~~LPs~v~l~L~P~~~~f~~ 353 (510)
T KOG2575|consen 308 FNVFLKIKELFTQQQLQVISLAATLI-GSLPSMVVLFLRPTNKGFLY 353 (510)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHH-HHhHHHHHHhhcccccchhh
Confidence 54 44444444444443332 33577777777787765444
No 215
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=22.34 E-value=8.3e+02 Score=24.76 Aligned_cols=123 Identities=11% Similarity=0.060 Sum_probs=60.9
Q ss_pred CcccccchhhhHHHHHHhhcCC--ccEEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 042567 285 GEFQSRTACVQNFNKNVLSYAP--CTVGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRI 362 (451)
Q Consensus 285 G~~e~~~~~~gs~~~~Vl~~ap--c~V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v 362 (451)
|.+|-+-.+...+.+.|-+..+ .+|++ |-... . ..+-.||.+..+++++++.+.+. +.++++
T Consensus 194 GslenR~Rf~~eii~aIr~~vg~~~~v~v---Rls~~--------~-~~~~~g~~~~~e~~~~~~~l~~~----~D~i~v 257 (370)
T cd02929 194 GSLENRARFWRETLEDTKDAVGDDCAVAT---RFSVD--------E-LIGPGGIESEGEGVEFVEMLDEL----PDLWDV 257 (370)
T ss_pred CChHhhhHHHHHHHHHHHHHcCCCceEEE---EecHH--------H-hcCCCCCCCHHHHHHHHHHHHhh----CCEEEe
Confidence 4444444567788888877764 34443 21110 0 11222345667888999888764 355555
Q ss_pred ecCCC--Ccc--CchhhhcHHHHHHHHHhccCCCCCeEEEEEEeCChHHHHHHHHhcCCCcEEEEcccC
Q 042567 363 DLLEN--SVE--SENDRCLDDAVTKEFMVGNVGNTRVECHEMVANDSKQLMDAIKKEKDFELVIVDFAE 427 (451)
Q Consensus 363 ~~~~~--~~~--~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~DLiivG~~~ 427 (451)
..... ... .........++.++++... .-.+... -.+.+..+..+++++- .+|+|.+||.-
T Consensus 258 s~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~-G~i~~~~~~~~~l~~g-~~D~V~~gR~~ 322 (370)
T cd02929 258 NVGDWANDGEDSRFYPEGHQEPYIKFVKQVT--SKPVVGV-GRFTSPDKMVEVVKSG-ILDLIGAARPS 322 (370)
T ss_pred cCCCccccccccccCCccccHHHHHHHHHHC--CCCEEEe-CCCCCHHHHHHHHHcC-CCCeeeechHh
Confidence 32110 000 0001111234555666533 2233332 1122334444555555 79999999974
No 216
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=22.22 E-value=1e+02 Score=30.19 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=49.3
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccC-CCcccccchhhhHHHHHHhhcCCccEEEeecCCCC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHE-NGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLT 318 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~-~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~ 318 (451)
+..|-.+...+ -.+...|++.|++.++..||.-..+ -+.. +-..+........+++.+||.+=-|++..
T Consensus 16 ~yAV~AfN~~n--~e~~~avi~AAe~~~sPvIlq~~~~~~~~~--~~~~~~~~~~~~a~~~~vPValHLDH~~~ 85 (287)
T PF01116_consen 16 GYAVPAFNVYN--LETARAVIEAAEELNSPVILQISPSEVKYM--GLEYLAAMVKAAAEEASVPVALHLDHGKD 85 (287)
T ss_dssp T-BEEEEE-SS--HHHHHHHHHHHHHTTS-EEEEEEHHHHHHH--HHHHHHHHHHHHHHHSTSEEEEEEEEE-S
T ss_pred CCeEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcchhhhhhh--hHHHHHHHHHHHHHHcCCCEEeecccCCC
Confidence 45566666654 6789999999999999999877654 1111 12357778899999999999998898754
No 217
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=22.19 E-value=3.5e+02 Score=26.45 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=49.7
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccc-c-chhhhHHHHHHhhcCC-ccEEEeecCCC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQS-R-TACVQNFNKNVLSYAP-CTVGIFVDRGL 317 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~-~-~~~~gs~~~~Vl~~ap-c~V~Ilvdr~~ 317 (451)
+..|-.+...+ .++...+++.|++.++..|+.-+.+ .... + -..+......+.++++ .||.+=-|++.
T Consensus 15 ~yav~Afn~~n--~e~~~avi~aAe~~~~PvIl~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~ 85 (282)
T TIGR01859 15 GYAVGAFNFNN--LEWTQAILEAAEEENSPVIIQVSEG--AIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGS 85 (282)
T ss_pred CceEEEEEECC--HHHHHHHHHHHHHhCCCEEEEcCcc--hhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 45555666655 6789999999999999999987765 1111 1 2356778888899999 89877667764
No 218
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=22.08 E-value=9.2e+02 Score=25.97 Aligned_cols=133 Identities=16% Similarity=0.076 Sum_probs=70.0
Q ss_pred CCCchhHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHH-----HHHHHHHHHHHHHHHHHHH-------HHHHh
Q 042567 10 GPPLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFV-----SLGMILVAAYLGKVWGSLL-------SLIWF 77 (451)
Q Consensus 10 ~~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~-----~~~~~~~~~~~~K~~~~~~-------~~~~~ 77 (451)
|...|+++...+-.+.-+...|.-|+.-++.+=+..-.....++ +-++++.+-.++-....+- .-..+
T Consensus 91 GANIGTt~Ta~iva~~l~~~~~~ll~~G~~~~~f~~~~~~~~lG~~~~GiGl~f~sl~l~~~a~~pl~~s~~~~~~i~~l 170 (533)
T COG1283 91 GANIGTTVTAWIVALDLSWLSPPLLAIGAILFFFGKSSKLRQLGRVLFGIGLIFLSLELLGQATEPLRQSPAFSDFIAKL 170 (533)
T ss_pred ccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcchHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhhchhHHHHHHHh
Confidence 34578888888887766655555444433333222111111111 1222222222222111111 11112
Q ss_pred cCCchhHHHHHHHhhhhHHH---HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCccc
Q 042567 78 KTSTRNDLLFGCFLNIKGII---ELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRK 142 (451)
Q Consensus 78 ~~~~~~s~~~g~~m~~~G~~---~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~ 142 (451)
.-++..++.+|.++..-..- .++++......|+|+.+.-..+++.+=+-|.+++++....-.+.-
T Consensus 171 ~~~~~~~l~~g~~lt~l~~SS~A~i~i~~~l~~~glis~~~~~alvLGaNlGt~i~a~laa~~~~~~a 238 (533)
T COG1283 171 SDDPIVALLIGALLTALIQSSLAAIGILLSLTSQGLISLEAALALVLGANLGTTITAVLAALGASAAA 238 (533)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhhhchhHHHHHhcccchhH
Confidence 33566666666665433333 333444556789999999888888888878888887776555443
No 219
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=22.07 E-value=2.9e+02 Score=25.69 Aligned_cols=44 Identities=25% Similarity=0.270 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCcEEEEcccCCCCcchhhhhhHHHHhh-cCccCC
Q 042567 406 KQLMDAIKKEKDFELVIVDFAEGHMMSLLVIQSVESIKQ-GAKLLP 450 (451)
Q Consensus 406 ~~~~~~i~~~~~~DLiivG~~~~~~~~~~~gs~~e~i~~-~~~~~~ 450 (451)
.++.+.+++. +.|++++-.-.+.+..-|+-.-.-.+.| |..+||
T Consensus 68 ~~~~~~l~~~-~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP 112 (207)
T PLN02331 68 DELVDALRGA-GVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLP 112 (207)
T ss_pred HHHHHHHHhc-CCCEEEEeCcchhCCHHHHhhCCCCEEEEeCcccc
Confidence 4556667777 8999999665554333333322223333 444444
No 220
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=22.03 E-value=1.6e+02 Score=26.68 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=23.7
Q ss_pred EEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 329 VAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 329 I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
|++.+.||.|+--++.++.+... .++..+++...
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~---~~v~~v~vd~g 34 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG---DRVLAVTATSP 34 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC---CcEEEEEeCCC
Confidence 46788889988888877766532 25777777544
No 221
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.98 E-value=1.7e+02 Score=28.58 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=36.2
Q ss_pred CCccEEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEe
Q 042567 305 APCTVGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRID 363 (451)
Q Consensus 305 apc~V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~ 363 (451)
....|+++.|+..+.. ..+.++|||-+ -.......+||...++.+-.++..
T Consensus 179 ~g~~v~~l~Dq~~~~~------~gv~v~FFG~~--a~t~~~~a~LA~~~~a~vvp~~~~ 229 (293)
T PRK06946 179 DGKPVMLGADMDFGLR------DSTFVPFFGVP--ACTLTAVSRLARTGGAQVVPFITE 229 (293)
T ss_pred CCCeEEEeCCCCCCCC------CCeEeCCCCCC--cHHhHHHHHHHHhcCCeEEEEEEE
Confidence 3357889999875321 46899999655 345566778888888888766553
No 222
>PRK09903 putative transporter YfdV; Provisional
Probab=21.91 E-value=3.3e+02 Score=26.73 Aligned_cols=132 Identities=9% Similarity=-0.071 Sum_probs=0.0
Q ss_pred CceeEEecCCCCchhHHHHhhhhhhhhhhhhHHHhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 042567 1 MGHLWVIPAGPPLGSALVEKSEVVIRNFFLPFLFIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWFKTS 80 (451)
Q Consensus 1 ~~~gl~~p~~~~~~~~l~~ki~~~~~~~fiPlFF~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~ 80 (451)
|+.|-.+-+...+.++-.+.++.++..+.+|...+..-.+.+...+.. .+......++...+.=+++-.+.-++++.+
T Consensus 16 i~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (314)
T PRK09903 16 MLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFA--DTRLTLVSLVVIVGCFFFSWFGCYKFFKRT 93 (314)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q ss_pred chhH--HHHHHHhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHH
Q 042567 81 TRND--LLFGCFLNIKGIIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLI 134 (451)
Q Consensus 81 ~~~s--~~~g~~m~~~G~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~ 134 (451)
.++. ..+....+.-|-+.+-+...-+.......-.++.+....-+.+......+
T Consensus 94 ~~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~~~~~~~~~~~g~~~ 149 (314)
T PRK09903 94 HAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYL 149 (314)
T ss_pred cchhhHhhhhhcCCCcccccHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHH
No 223
>PLN03015 UDP-glucosyl transferase
Probab=21.85 E-value=1.2e+02 Score=32.08 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=31.0
Q ss_pred eE-EEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEe
Q 042567 328 NV-AVFFLGGPDDREAMALVSRISSHPGMSITIFRID 363 (451)
Q Consensus 328 ~I-~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~ 363 (451)
|+ ++||.|.-+---.+++|++||.+.|.++|++...
T Consensus 5 Hvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~ 41 (470)
T PLN03015 5 HALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVT 41 (470)
T ss_pred EEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 55 9999988899999999999998778889888653
No 224
>PF15114 UPF0640: Uncharacterised protein family UPF0640
Probab=21.78 E-value=45 Score=25.01 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=11.3
Q ss_pred hhhhhhhhHHHhhhcc
Q 042567 24 VIRNFFLPFLFIRIGL 39 (451)
Q Consensus 24 ~~~~~fiPlFF~~~Gl 39 (451)
++--=|+|+||+.-|.
T Consensus 21 fG~YRFLP~FF~lGaa 36 (69)
T PF15114_consen 21 FGIYRFLPLFFVLGAA 36 (69)
T ss_pred cchhhhhHHHHHhhhh
Confidence 4445589999987663
No 225
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=21.77 E-value=4.1e+02 Score=26.81 Aligned_cols=77 Identities=9% Similarity=0.128 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEEEEe-CChHHHHHHHHhcC--CC
Q 042567 342 AMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHEMVA-NDSKQLMDAIKKEK--DF 418 (451)
Q Consensus 342 Al~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v-~~g~~~~~~i~~~~--~~ 418 (451)
|....+|+-+..+ .--.++|.+|.. ..-+..++.+..++ +...|.|.+- ....||..++|++. +.
T Consensus 34 a~~~v~rfL~~l~-~~~~~~flt~p~--------~mG~~~~~~~~~~~---~v~~~~~~~~~tTa~DT~~~~r~~~~~gV 101 (355)
T COG3199 34 AIVRVKRFLKKLD-ANGDVEFLTPPG--------PMGESLAEASGFKY---RVIRFQESTPRTTAEDTINAVRRMVERGV 101 (355)
T ss_pred HHHHHHHHHHhcc-ccCceEEEeCCc--------ccchhHHHhhcCcc---eEEeecccCCCccHHHHHHHHHHHHhcCc
Confidence 5666788888777 333455655532 11222333333222 2222766665 45688999999997 79
Q ss_pred cEEEEcccCCCC
Q 042567 419 ELVIVDFAEGHM 430 (451)
Q Consensus 419 DLiivG~~~~~~ 430 (451)
|||++--+-++-
T Consensus 102 dlIvfaGGDGTa 113 (355)
T COG3199 102 DLIVFAGGDGTA 113 (355)
T ss_pred eEEEEeCCCccH
Confidence 999886655543
No 226
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.73 E-value=1.7e+02 Score=28.83 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=34.9
Q ss_pred CCccEEEeecCCCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 042567 305 APCTVGIFVDRGLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRI 362 (451)
Q Consensus 305 apc~V~Ilvdr~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v 362 (451)
..-.|+++.|+..... +.+.++|||.+ -.....+.+||...++.|..+..
T Consensus 193 ~g~~v~il~Dq~~~~~------~gv~v~FfG~~--a~t~~g~a~LA~~~~apvvp~~~ 242 (306)
T PRK08733 193 RGGFLWYAPDQDMRGK------DTVFVPFFGHP--ASTITATHQLARLTGCAVVPYFH 242 (306)
T ss_pred CCCeEEEeCCCCCCCC------CcEEeCCCCCc--hhHHHHHHHHHHHhCCeEEEEEE
Confidence 3357889999875321 46899999655 34455677888888888875555
No 227
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=21.73 E-value=2.3e+02 Score=27.69 Aligned_cols=27 Identities=22% Similarity=0.553 Sum_probs=21.3
Q ss_pred EEEeCChHHHHHHHHhcC-CCcEEEEcccCC
Q 042567 399 EMVANDSKQLMDAIKKEK-DFELVIVDFAEG 428 (451)
Q Consensus 399 e~~v~~g~~~~~~i~~~~-~~DLiivG~~~~ 428 (451)
+..+.||. +++++.+ .||+|++=....
T Consensus 133 ~i~i~Dg~---~~v~~~~~~fDvIi~D~tdp 160 (282)
T COG0421 133 EIIIDDGV---EFLRDCEEKFDVIIVDSTDP 160 (282)
T ss_pred EEEeccHH---HHHHhCCCcCCEEEEcCCCC
Confidence 67788887 5788777 799999987754
No 228
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=21.63 E-value=1.2e+02 Score=31.77 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=30.0
Q ss_pred eE-EEEecCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 042567 328 NV-AVFFLGGPDDREAMALVSRISSHPGMSITIFRI 362 (451)
Q Consensus 328 ~I-~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v 362 (451)
|+ ++||.|.-+---.+++|++++.+.|.++|++.-
T Consensus 5 hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t 40 (455)
T PLN02152 5 HFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATC 40 (455)
T ss_pred EEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEec
Confidence 55 899998889999999999999766888888774
No 229
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=21.58 E-value=4.7e+02 Score=25.43 Aligned_cols=46 Identities=4% Similarity=-0.179 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhH-HHHHHHHH
Q 042567 58 ILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKG-IIELLVFL 103 (451)
Q Consensus 58 ~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G-~~~li~~~ 103 (451)
.+++..+.-++.+++.++.+|.+.+|+.++++-...|= ...+.++.
T Consensus 200 ~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~lal~la~ 246 (286)
T TIGR00841 200 VGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQLCSTIAQ 246 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHHHHHHHH
Confidence 33344455566777888999998877777666554432 34444444
No 230
>PLN02173 UDP-glucosyl transferase family protein
Probab=21.37 E-value=1.3e+02 Score=31.68 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=29.6
Q ss_pred eE-EEEecCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 042567 328 NV-AVFFLGGPDDREAMALVSRISSHPGMSITIFRI 362 (451)
Q Consensus 328 ~I-~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v 362 (451)
|+ ++||.+.-+---.+++|++|+.+ |+++|++.-
T Consensus 7 hvv~~P~paqGHi~P~l~lAk~La~~-G~~vT~v~t 41 (449)
T PLN02173 7 HVLAVPFPSQGHITPIRQFCKRLHSK-GFKTTHTLT 41 (449)
T ss_pred EEEEecCcccccHHHHHHHHHHHHcC-CCEEEEEEC
Confidence 55 99999888999999999999987 888888763
No 231
>PLN02555 limonoid glucosyltransferase
Probab=21.27 E-value=1.2e+02 Score=32.11 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=29.3
Q ss_pred eE-EEEecCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 042567 328 NV-AVFFLGGPDDREAMALVSRISSHPGMSITIFRI 362 (451)
Q Consensus 328 ~I-~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v 362 (451)
|| ++||.+.-+--..+++|++|+.+ |+++|++.-
T Consensus 9 HVv~~PfpaqGHi~Pml~lA~~La~~-G~~vT~v~T 43 (480)
T PLN02555 9 HVMLVSFPGQGHVNPLLRLGKLLASK-GLLVTFVTT 43 (480)
T ss_pred EEEEECCcccccHHHHHHHHHHHHhC-CCeEEEEec
Confidence 55 99999888999999999999976 888888764
No 232
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=21.25 E-value=5.1e+02 Score=25.21 Aligned_cols=58 Identities=7% Similarity=0.022 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhHHHHHHHHHHHHhcCCCCh
Q 042567 56 GMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFLNIKGIIELLVFLRWIIYKPIDV 113 (451)
Q Consensus 56 ~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~g~i~~ 113 (451)
..+.+.-=+++=.+|..++.+.|++.+++...+++|..---+.-..+.........+.
T Consensus 159 Q~lAl~PG~SRSGaTI~~~lllG~~r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~ 216 (270)
T COG1968 159 QCLALIPGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMFGASALDLFKSGDALSA 216 (270)
T ss_pred HHHHHcCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 3333333355677888999999999999999999998776666555555555333333
No 233
>PRK01844 hypothetical protein; Provisional
Probab=21.04 E-value=2.2e+02 Score=21.82 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042567 52 FVSLGMILVAAYLGKVWGSLLSLIWF 77 (451)
Q Consensus 52 ~~~~~~~~~~~~~~K~~~~~~~~~~~ 77 (451)
|..+++.++..++|=++|-+++-+++
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~ 29 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44344444555555555555555544
No 234
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=20.98 E-value=3.9e+02 Score=26.22 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=50.3
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccc-c-chhhhHHHHHHhhcCC--ccEEEeecCCCC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQS-R-TACVQNFNKNVLSYAP--CTVGIFVDRGLT 318 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~-~-~~~~gs~~~~Vl~~ap--c~V~Ilvdr~~~ 318 (451)
+..|-.+...+ ..+...|++.|++.++.+||.-..+ .... . ...+....+...++++ .||++=-|++..
T Consensus 17 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~ 89 (286)
T PRK08610 17 GYAVGQYNLNN--LEFTQAILEASQEENAPVILGVSEG--AARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSS 89 (286)
T ss_pred CceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCcc--HHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCC
Confidence 45555666654 6778999999999999999977764 1111 1 2346777888888887 699998888754
No 235
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=20.61 E-value=4.6e+02 Score=25.71 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=51.2
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCC--ccEEEeecCCCC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAP--CTVGIFVDRGLT 318 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~ap--c~V~Ilvdr~~~ 318 (451)
+..|-.+.... ..+...|++.|++.++.+||.-+.+......+-..+....+...+++. .||++=-|++..
T Consensus 17 ~yAV~AfN~~n--~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~ 89 (285)
T PRK07709 17 KYAVGQFNMNN--LEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSS 89 (285)
T ss_pred CceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCC
Confidence 55666666665 678899999999999999998776411110122356778888888876 699888888854
No 236
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=20.50 E-value=1.1e+02 Score=28.27 Aligned_cols=39 Identities=21% Similarity=0.084 Sum_probs=29.4
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCc
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSV 369 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~ 369 (451)
.++++.|.||.|+--.|.++.+... .+.|+++.+..++.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~~----~~~v~f~DTg~efp 52 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKISP----DIPVIFLDTGYHFP 52 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcCC----CCcEEEecCCCCCH
Confidence 4789999999999999999988543 35677766654443
No 237
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.46 E-value=3.2e+02 Score=23.36 Aligned_cols=62 Identities=13% Similarity=0.291 Sum_probs=34.4
Q ss_pred EEEEcCCCCchHhHHHHHHhC--CCCEEEEeccCCCcccccchhhhHHHHHHh-hcCCccEEEeecCC
Q 042567 252 FKMISPYNTMHQSICKLVEDN--LIPLVLLPFHENGEFQSRTACVQNFNKNVL-SYAPCTVGIFVDRG 316 (451)
Q Consensus 252 ~~~vs~~~~~~~~I~~~A~e~--~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl-~~apc~V~Ilvdr~ 316 (451)
.+.+|.....++++.++++|- +++++-.|-.+||.+.. .+-.+.+.+. .+.--.+++|+|-|
T Consensus 5 iVIVSHS~~lAeGv~~li~em~~dv~i~~~gGtddg~iGT---s~~~I~~aI~~~~~ad~~lif~DlG 69 (129)
T COG3412 5 IVIVSHSKELAEGVAELIREMAGDVPITYAGGTDDGQIGT---SFEKIMEAIEKANEADHVLVFYDLG 69 (129)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCceEEecCCCCCCcCc---CHHHHHHHHHhccccCceEEEEecc
Confidence 577887788899999998874 44444444333665432 2333333333 23334445555544
No 238
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=20.08 E-value=3.8e+02 Score=26.37 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=66.5
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccc-c-chhhhHHHHHHhhcC--CccEEEeecCCCCCCC
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQS-R-TACVQNFNKNVLSYA--PCTVGIFVDRGLTYYH 321 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~-~-~~~~gs~~~~Vl~~a--pc~V~Ilvdr~~~~~~ 321 (451)
+..|-.+...+ ..+...|++.|++.++..||.-+.+ .... + ...+........+++ ..||++=-|++ ....
T Consensus 17 ~yav~AfN~~n--~e~~~avi~aAe~~~sPvIlq~s~~--~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~ 91 (293)
T PRK07315 17 GYAVGGFNTNN--LEWTQAILRAAEAKKAPVLIQTSMG--AAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHG-HYED 91 (293)
T ss_pred CceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCcc--HHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHH
Confidence 45566666665 6788999999999999999987654 1110 1 135677788888888 66999988888 4210
Q ss_pred C---CCcceeEEEEecCCcchHHHHHHH---HHHhcCCCeEE
Q 042567 322 P---SNICYNVAVFFLGGPDDREAMALV---SRISSHPGMSI 357 (451)
Q Consensus 322 ~---~~~~~~I~v~f~Gg~ddreAl~~a---~rma~~~~~~l 357 (451)
- .+...+..+...-.-+.+|-++.+ .++|+..++.+
T Consensus 92 i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 92 ALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred HHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 0 000123334443334556666665 44555667766
No 239
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.01 E-value=3.8e+02 Score=26.27 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhcCcccc
Q 042567 96 IIELLVFLRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFYKPRKR 143 (451)
Q Consensus 96 ~~~li~~~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~~~~~~ 143 (451)
..|++....+...+++.+--.+++|+.++. ++.-.+--|+|+++++
T Consensus 243 aSDlagtAAtaA~aaF~Pcgiaalvllil~--vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 243 ASDDAERAASAATSTFLPYGIAALVLIILT--VVLIILYIWLYRRRKK 288 (295)
T ss_pred cccccchHHHHHHHhhcccHHHHHHHHHHH--HHHHHHHHHHHHhhcc
Confidence 346666677777788887777776665544 4445566777876554
Done!