Query 042567
Match_columns 451
No_of_seqs 236 out of 1563
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 12:40:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mt0_A Uncharacterized protein 99.9 1.3E-22 4.4E-27 197.6 20.2 244 167-447 9-268 (290)
2 3olq_A Universal stress protei 99.9 2.4E-22 8.1E-27 197.9 20.2 265 166-447 8-297 (319)
3 3loq_A Universal stress protei 99.9 3.3E-22 1.1E-26 194.9 16.8 256 167-448 24-283 (294)
4 3cis_A Uncharacterized protein 99.9 7.3E-22 2.5E-26 194.0 15.9 267 166-447 20-298 (309)
5 3ab8_A Putative uncharacterize 99.9 5.7E-21 1.9E-25 183.4 17.1 249 167-447 2-261 (268)
6 3fdx_A Putative filament prote 99.5 2.6E-13 8.9E-18 117.0 11.0 136 167-312 3-142 (143)
7 3s3t_A Nucleotide-binding prot 99.4 4.1E-13 1.4E-17 116.1 10.2 137 166-312 6-145 (146)
8 3tnj_A Universal stress protei 99.4 5.1E-13 1.7E-17 116.2 10.2 139 166-314 7-147 (150)
9 1mjh_A Protein (ATP-binding do 99.4 2E-12 6.9E-17 113.9 13.4 139 166-313 6-158 (162)
10 3hgm_A Universal stress protei 99.4 6.5E-13 2.2E-17 114.9 9.6 137 167-312 4-147 (147)
11 2z08_A Universal stress protei 99.4 8.8E-13 3E-17 113.0 9.3 132 167-312 4-136 (137)
12 2dum_A Hypothetical protein PH 99.4 2.9E-12 1E-16 113.9 12.4 140 167-315 7-157 (170)
13 1tq8_A Hypothetical protein RV 99.4 2.4E-12 8.1E-17 114.3 11.1 137 165-313 17-157 (163)
14 1zcd_A Na(+)/H(+) antiporter 1 99.4 3.4E-14 1.2E-18 142.0 -1.1 136 3-139 233-385 (388)
15 3dlo_A Universal stress protei 99.4 1.8E-12 6.1E-17 114.1 9.7 128 166-312 25-154 (155)
16 3fg9_A Protein of universal st 99.4 1.2E-12 4E-17 114.8 8.5 135 166-312 16-155 (156)
17 2gm3_A Unknown protein; AT3G01 99.3 1.2E-11 4.1E-16 110.5 13.5 144 166-316 6-165 (175)
18 3idf_A USP-like protein; unive 99.3 3.2E-12 1.1E-16 109.4 8.5 132 167-312 3-137 (138)
19 1jmv_A USPA, universal stress 99.3 6.9E-12 2.4E-16 107.7 10.6 134 167-315 4-139 (141)
20 1q77_A Hypothetical protein AQ 99.1 2.3E-10 7.8E-15 97.8 10.3 128 166-312 5-137 (138)
21 3mt0_A Uncharacterized protein 99.1 1.8E-10 6E-15 111.5 9.3 137 165-316 134-278 (290)
22 3s3t_A Nucleotide-binding prot 99.1 9.4E-10 3.2E-14 94.7 11.1 119 327-447 6-139 (146)
23 3olq_A Universal stress protei 99.0 7.8E-10 2.7E-14 108.1 10.6 145 165-317 156-308 (319)
24 3idf_A USP-like protein; unive 99.0 1.1E-09 3.7E-14 93.5 10.2 118 327-447 2-131 (138)
25 3hgm_A Universal stress protei 99.0 8.8E-10 3E-14 94.9 9.3 119 327-447 3-141 (147)
26 3dlo_A Universal stress protei 99.0 7.1E-10 2.4E-14 97.3 7.8 118 327-447 25-148 (155)
27 3fdx_A Putative filament prote 99.0 1.5E-09 5E-14 93.2 9.3 119 327-447 2-136 (143)
28 2z08_A Universal stress protei 99.0 1.8E-09 6.3E-14 92.1 9.4 118 327-447 3-130 (137)
29 1mjh_A Protein (ATP-binding do 99.0 3.4E-09 1.1E-13 93.0 11.3 119 327-447 6-151 (162)
30 3tnj_A Universal stress protei 98.9 1.9E-09 6.5E-14 93.3 8.7 117 327-447 7-139 (150)
31 1tq8_A Hypothetical protein RV 98.9 3.2E-09 1.1E-13 93.9 10.3 117 327-447 18-150 (163)
32 2dum_A Hypothetical protein PH 98.9 2.8E-09 9.5E-14 94.4 9.5 120 327-447 6-148 (170)
33 3loq_A Universal stress protei 98.9 3.5E-09 1.2E-13 102.4 10.3 121 165-314 170-290 (294)
34 3fg9_A Protein of universal st 98.9 3.5E-09 1.2E-13 92.4 7.0 118 327-447 16-149 (156)
35 3cis_A Uncharacterized protein 98.8 6.5E-09 2.2E-13 101.3 9.1 134 166-313 172-305 (309)
36 2gm3_A Unknown protein; AT3G01 98.7 6.5E-08 2.2E-12 86.0 11.5 119 327-447 6-155 (175)
37 1jmv_A USPA, universal stress 98.6 1.9E-07 6.5E-12 79.6 11.2 115 327-447 3-130 (141)
38 1q77_A Hypothetical protein AQ 98.5 8.4E-07 2.9E-11 75.3 10.3 109 327-447 5-131 (138)
39 3ab8_A Putative uncharacterize 98.4 3.4E-07 1.2E-11 87.0 7.4 118 327-447 1-141 (268)
40 3g40_A Na-K-CL cotransporter; 96.9 0.055 1.9E-06 51.3 17.6 221 165-428 20-255 (294)
41 1zun_A Sulfate adenylyltransfe 79.5 2.7 9.2E-05 40.7 6.1 56 327-389 47-102 (325)
42 1iv0_A Hypothetical protein; r 68.4 12 0.00041 29.2 6.3 54 260-315 38-93 (98)
43 1o97_C Electron transferring f 66.7 14 0.00048 34.4 7.5 80 336-428 36-123 (264)
44 1efp_B ETF, protein (electron 65.7 27 0.00093 32.2 9.2 79 336-428 36-124 (252)
45 1efv_B Electron transfer flavo 63.7 27 0.00091 32.3 8.7 79 336-428 39-127 (255)
46 1wy5_A TILS, hypothetical UPF0 62.1 8.7 0.0003 36.7 5.2 39 327-365 25-64 (317)
47 1ni5_A Putative cell cycle pro 59.0 13 0.00044 37.3 6.0 95 327-428 14-119 (433)
48 3zux_A Transporter, ASBTNM; tr 57.7 64 0.0022 30.9 10.6 106 27-138 46-155 (332)
49 3zux_A Transporter, ASBTNM; tr 56.7 90 0.0031 29.8 11.5 50 57-106 232-282 (332)
50 3a2k_A TRNA(Ile)-lysidine synt 56.2 9.5 0.00032 38.6 4.5 59 327-389 19-77 (464)
51 2wsi_A FAD synthetase; transfe 52.1 20 0.00068 34.1 5.8 95 327-429 54-169 (306)
52 1nu0_A Hypothetical protein YQ 47.4 38 0.0013 28.1 6.1 57 260-316 40-98 (138)
53 3fwk_A FMN adenylyltransferase 42.6 77 0.0026 30.1 8.2 91 327-428 59-171 (308)
54 1sur_A PAPS reductase; assimil 41.6 32 0.0011 30.4 5.2 52 327-389 45-96 (215)
55 2oq2_A Phosphoadenosine phosph 40.9 26 0.0009 32.3 4.6 54 328-389 43-96 (261)
56 3av3_A Phosphoribosylglycinami 40.4 79 0.0027 28.1 7.6 43 407-450 73-116 (212)
57 1vhx_A Putative holliday junct 36.0 59 0.002 27.3 5.7 56 259-315 41-98 (150)
58 3k32_A Uncharacterized protein 33.6 1E+02 0.0034 26.9 7.1 35 327-365 7-41 (203)
59 3o4f_A Spermidine synthase; am 31.7 46 0.0016 31.5 4.6 81 327-427 85-167 (294)
60 3ih5_A Electron transfer flavo 30.7 55 0.0019 29.3 4.9 29 336-364 18-46 (217)
61 4b4t_W RPN10, 26S proteasome r 30.2 1.3E+02 0.0044 27.8 7.5 52 327-386 108-162 (268)
62 2l82_A Designed protein OR32; 27.6 2.3E+02 0.0077 22.4 8.5 33 327-362 2-34 (162)
63 2k4m_A TR8_protein, UPF0146 pr 26.3 71 0.0024 27.0 4.4 33 251-283 92-124 (153)
64 3kcq_A Phosphoribosylglycinami 23.1 2.3E+02 0.0078 25.2 7.5 44 406-450 72-116 (215)
65 3bl5_A Queuosine biosynthesis 21.2 1.5E+02 0.0053 25.6 6.0 35 327-365 4-38 (219)
66 2c5s_A THII, probable thiamine 20.9 2E+02 0.0067 28.3 7.3 35 327-365 188-222 (413)
No 1
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.90 E-value=1.3e-22 Score=197.58 Aligned_cols=244 Identities=9% Similarity=0.063 Sum_probs=170.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCCCc
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGAA 246 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 246 (451)
|||+|+|+++....+++.|..++.. .+..++++|+++ + . +. ....+++.+.++ . .+
T Consensus 9 ~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~-~---------~---~~---~~~l~~~~~~~~---~---~~ 64 (290)
T 3mt0_A 9 SILVVIEPDQLEGLALKRAQLIAGV--TQSHLHLLVCEK-R---------R---DH---SAALNDLAQELR---E---EG 64 (290)
T ss_dssp EEEEECCSSCSCCHHHHHHHHHHHH--HCCEEEEEEECS-S---------S---CC---HHHHHHHHHHHH---H---TT
T ss_pred eEEEEeCCCccchHHHHHHHHHHHh--cCCeEEEEEeeC-c---------H---HH---HHHHHHHHHHHh---h---CC
Confidence 8999999999999999999999954 567899999986 1 0 11 122333333332 2 36
Q ss_pred eeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecCCCCCCCCCCcc
Q 042567 247 VKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLTYYHPSNIC 326 (451)
Q Consensus 247 V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~~~~~~~ 326 (451)
+.++..+... +++.+.|++.|++.++||||||+++.+.. ...++|++.++++++++|||+++...... ..
T Consensus 65 ~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~--~~~~~gs~~~~vl~~~~~PVlvv~~~~~~------~~ 134 (290)
T 3mt0_A 65 YSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPL--KKAILTPDDWKLLRFAPCPVLMTKTARPW------TG 134 (290)
T ss_dssp CCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTT--STTSCCHHHHHHHHHCSSCEEEECCCSCS------TT
T ss_pred CeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCch--hhcccCHHHHHHHhcCCCCEEEecCCCCC------CC
Confidence 7777666543 78999999999999999999999983332 34478999999999999999886422211 12
Q ss_pred eeEEEEecCCcc-------hHHHHHHHHHHhcCCCeEEEEEEEecCCCCcc-------CchhhhcHHHHHHHHHhccCCC
Q 042567 327 YNVAVFFLGGPD-------DREAMALVSRISSHPGMSITIFRIDLLENSVE-------SENDRCLDDAVTKEFMVGNVGN 392 (451)
Q Consensus 327 ~~I~v~f~Gg~d-------dreAl~~a~rma~~~~~~ltvv~v~~~~~~~~-------~~~~~~~~~~~l~e~~~~~~~~ 392 (451)
++|++++-|+++ ++.|+++|.++|+..+++++++++..+..... .+..++..++.++++..+.. .
T Consensus 135 ~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~ 213 (290)
T 3mt0_A 135 GKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEYG-F 213 (290)
T ss_dssp CEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHHT-C
T ss_pred CeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 799999998888 79999999999999999999999987532110 01111222344444443331 1
Q ss_pred CCeEEEEEEeCCh-HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 393 TRVECHEMVANDS-KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 393 ~~v~y~e~~v~~g-~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
..+.+ .....+. ..+.+++++. ++|||+||++++. +.++|+||.++.|++|++
T Consensus 214 ~~~~~-~v~~g~~~~~I~~~a~~~-~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~ 268 (290)
T 3mt0_A 214 SDEQL-HIEEGPADVLIPRTAQKL-DAVVTVIGTVARTGLSGALIGNTAEVVLDTLE 268 (290)
T ss_dssp CTTTE-EEEESCHHHHHHHHHHHH-TCSEEEEECCSSCCGGGCCSCHHHHHHHTTCS
T ss_pred CcceE-EEeccCHHHHHHHHHHhc-CCCEEEECCCCCcCCcceecchHHHHHHhcCC
Confidence 11111 1222232 3334444444 8999999999876 999999999999999987
No 2
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.89 E-value=2.4e-22 Score=197.89 Aligned_cols=265 Identities=9% Similarity=0.030 Sum_probs=174.8
Q ss_pred ceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccc-cccHHHHHHHHHHHHhc-C
Q 042567 166 LRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLV-ANSTDRIMRAMTRYSKG-S 243 (451)
Q Consensus 166 ~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~-~~~~~~i~~~f~~~~~~-~ 243 (451)
-|||+|+|++++...+++.|..++.. .+..++++|+++-.....+...... ..... ....+...+.++++.+. .
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQR--NGGRIKAFLPVYDLSYDMTTLLSPD--ERNAMRKGVINQKTAWIKQQARYYL 83 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHH--HCCEEEEEEEECCGGGGCTTTSCHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHH--cCCeEEEEEEecccchhhccccChh--hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999999999954 5689999999863211000000000 00000 11112222333333222 1
Q ss_pred CCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecCCCCCCCCC
Q 042567 244 GAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLTYYHPS 323 (451)
Q Consensus 244 ~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~~~~ 323 (451)
..+++++..+... ++..+.|++.|++.++||||||+|+.+.. ...++|++.++|+++++|||+++..+...
T Consensus 84 ~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~--~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~----- 154 (319)
T 3olq_A 84 EAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKL--GSLIFTPLDWQLLRKCPAPVWMVKDKEWP----- 154 (319)
T ss_dssp HTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--C--CSCBCCHHHHHHHHHCSSCEEEEESSCCC-----
T ss_pred hcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchh--hcccccccHHHHHhcCCCCEEEecCcccc-----
Confidence 2467777776633 89999999999999999999999983322 33478999999999999999886543311
Q ss_pred CcceeEEEEecCCcc-------hHHHHHHHHHHhcCC--CeEEEEEEEecCCCCcc------C---ch---hhhcHHHHH
Q 042567 324 NICYNVAVFFLGGPD-------DREAMALVSRISSHP--GMSITIFRIDLLENSVE------S---EN---DRCLDDAVT 382 (451)
Q Consensus 324 ~~~~~I~v~f~Gg~d-------dreAl~~a~rma~~~--~~~ltvv~v~~~~~~~~------~---~~---~~~~~~~~l 382 (451)
..++|++++-|+++ ++.|+++|.++++.. +++++++++..+..... . +. .++..++.+
T Consensus 155 -~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 233 (319)
T 3olq_A 155 -EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAM 233 (319)
T ss_dssp -TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHH
T ss_pred -cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHH
Confidence 22799999998885 499999999999988 99999999986532210 0 01 111224445
Q ss_pred HHHHhccCCCCCeEEEEEEeCCh-HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 383 KEFMVGNVGNTRVECHEMVANDS-KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 383 ~e~~~~~~~~~~v~y~e~~v~~g-~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
+++..+.. ...+.+ .....+. ..+.+++++. ++|||+||++++. +.++|+||.++.|++|++
T Consensus 234 ~~~~~~~~-~~~~~~-~v~~g~~~~~I~~~a~~~-~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~ 297 (319)
T 3olq_A 234 KELRQKFS-IPEEKT-HVKEGLPEQVIPQVCEEL-NAGIVVLGILGRTGLSAAFLGNTAEQLIDHIK 297 (319)
T ss_dssp HHHHHHTT-CCGGGE-EEEESCHHHHHHHHHHHT-TEEEEEEECCSCCSTHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhC-CCcccE-EEecCCcHHHHHHHHHHh-CCCEEEEeccCccCCccccccHHHHHHHhhCC
Confidence 55544331 112211 1222232 3334444444 8999999998765 999999999999999986
No 3
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.88 E-value=3.3e-22 Score=194.91 Aligned_cols=256 Identities=10% Similarity=0.089 Sum_probs=174.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccc-cccHHHHHHHHHHHHhcCCC
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLV-ANSTDRIMRAMTRYSKGSGA 245 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~-~~~~~~i~~~f~~~~~~~~~ 245 (451)
|||+|+|++++...+++.|..++.. .+..++++|+++.+...... ......+.... ....++.++.+.+..+. .
T Consensus 24 ~ILv~vD~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 98 (294)
T 3loq_A 24 AMLLPTDLSENSFKVLEYLGDFKKV--GVEEIGVLFVINLTKLSTVS-GGIDIDHYIDEMSEKAEEVLPEVAQKIEA--A 98 (294)
T ss_dssp EEEEECCSCTGGGGGGGGHHHHHHT--TCCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHHH--T
T ss_pred cEEEecCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHH--c
Confidence 8999999999999999999999954 67899999999865422110 00000000000 22334444444443332 3
Q ss_pred ceeEee-EEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecCCCCCCCCCC
Q 042567 246 AVKVQP-FKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLTYYHPSN 324 (451)
Q Consensus 246 ~V~v~~-~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~~~~~ 324 (451)
+++++. .+. ..+++.+.| .+++.++||||||+++.+.. ...++|++.++|+++++|||.|+..... .. .
T Consensus 99 g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~--~~~~~Gs~~~~vl~~~~~PVlvv~~~~~-~~---~ 168 (294)
T 3loq_A 99 GIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKF--KKILLGSVSEGVLHDSKVPVYIFKHDMV-VN---S 168 (294)
T ss_dssp TCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHH--HHHHHCCHHHHHHHHCSSCEEEECCCTT-TT---C
T ss_pred CCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCccc--cceeeccHHHHHHhcCCCCEEEecCccc-cC---c
Confidence 677765 333 127888998 99999999999999974332 3347899999999999999988644321 10 1
Q ss_pred cceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEEEEeCC
Q 042567 325 ICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHEMVAND 404 (451)
Q Consensus 325 ~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~ 404 (451)
..++|++++-|++.++.|+++|.++++..+++++++++..+.. .++..+++.+.++... . .+.+ .....+
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------~~~~l~~~~~~l~~~~--~-~~~~-~~~~g~ 238 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------KTADLRVMEEVIGAEG--I-EVHV-HIESGT 238 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------CHHHHHHHHHHHHHTT--C-CEEE-EEECSC
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------HHHHHHHHHHHHHHcC--C-cEEE-EEecCC
Confidence 2279999999999999999999999999999999999986543 2233344444444322 1 1222 222222
Q ss_pred h-HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCcc
Q 042567 405 S-KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAKL 448 (451)
Q Consensus 405 g-~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~~ 448 (451)
. ..+.+++++. ++||++||++++. +.++|+||.++.|++|++.
T Consensus 239 ~~~~I~~~a~~~-~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~ 283 (294)
T 3loq_A 239 PHKAILAKREEI-NATTIFMGSRGAGSVMTMILGSTSESVIRRSPV 283 (294)
T ss_dssp HHHHHHHHHHHT-TCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSS
T ss_pred HHHHHHHHHHhc-CcCEEEEeCCCCCCccceeeCcHHHHHHhcCCC
Confidence 2 3333444444 8999999999876 9999999999999999873
No 4
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.87 E-value=7.3e-22 Score=193.96 Aligned_cols=267 Identities=13% Similarity=0.095 Sum_probs=171.0
Q ss_pred ceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCC-cc-cccccccccccccccHHHHHHHHHHHHhcC
Q 042567 166 LRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRAL-PV-IVPYNTQKRRLVANSTDRIMRAMTRYSKGS 243 (451)
Q Consensus 166 ~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~-~~-~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 243 (451)
-+||+|+|+++....+++.|..++.. .+..++++|+++ +.... +. .......+. .....++.++.+.+..+..
T Consensus 20 ~~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 94 (309)
T 3cis_A 20 LGIIVGIDDSPAAQVAVRWAARDAEL--RKIPLTLVHAVS-PEVATWLEVPLPPGVLRW--QQDHGRHLIDDALKVVEQA 94 (309)
T ss_dssp TEEEEECCSSHHHHHHHHHHHHHHHH--HTCCEEEEEECC-CCCCCTTCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHh--cCCcEEEEEEec-CcccccccCCCCchhhHH--HHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999853 457899999987 22111 00 000000000 0122233333322222211
Q ss_pred ---CCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecCCCCCC
Q 042567 244 ---GAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLTYY 320 (451)
Q Consensus 244 ---~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~~ 320 (451)
..++.++..+.. ++..+.|++.|+ ++||||||+|+.+.. ...++|++.++|+++++|||.|+........
T Consensus 95 ~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~--~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~~~ 167 (309)
T 3cis_A 95 SLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRW--PGRLLGSVSSGLLRHAHCPVVIIHDEDSVMP 167 (309)
T ss_dssp CSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCC--TTCCSCHHHHHHHHHCSSCEEEECTTCCCSC
T ss_pred cccCCCceEEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCccc--cccccCcHHHHHHHhCCCCEEEEcCCcccCC
Confidence 125677765553 789999999996 899999999983332 3347899999999999999988654432100
Q ss_pred CCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCc---cC--chhhhcHHHHHHHHHhccC-CCCC
Q 042567 321 HPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSV---ES--ENDRCLDDAVTKEFMVGNV-GNTR 394 (451)
Q Consensus 321 ~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~---~~--~~~~~~~~~~l~e~~~~~~-~~~~ 394 (451)
....++|++++-|++.++.|+++|.++|+..+++++++++..+.... .. +...+..++.++++..... ....
T Consensus 168 --~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 245 (309)
T 3cis_A 168 --HPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQERYPN 245 (309)
T ss_dssp --SSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHHHHCTT
T ss_pred --CCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 01227999999999999999999999999999999999998653211 00 1111122233333322110 0111
Q ss_pred eEEEEEEeCChHHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 395 VECHEMVANDSKQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 395 v~y~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
+.+ +..+..|.....+++.+.++|||+||++++. +.++|+||.++.|++|++
T Consensus 246 ~~~-~~~~~~g~~~~~I~~~a~~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~ 298 (309)
T 3cis_A 246 VAI-TRVVVRDQPARQLVQRSEEAQLVVVGSRGRGGYAGMLVGSVGETVAQLAR 298 (309)
T ss_dssp SCE-EEEEESSCHHHHHHHHHTTCSEEEEESSCSSCCTTCSSCHHHHHHHHHCS
T ss_pred CcE-EEEEEcCCHHHHHHHhhCCCCEEEECCCCCCCccccccCcHHHHHHhcCC
Confidence 222 2223344322233333338999999999865 999999999999999986
No 5
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.86 E-value=5.7e-21 Score=183.44 Aligned_cols=249 Identities=10% Similarity=0.053 Sum_probs=168.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCccccc-c-ccccc-------ccc-cccHHHHHHHH
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVP-Y-NTQKR-------RLV-ANSTDRIMRAM 236 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~-~-~~~~~-------~~~-~~~~~~i~~~f 236 (451)
|||+|+|++++...+++.|..++.. .+..++++|+++.+....+.... . ...+. ... ....++.++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYK--LSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHH--HTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHH--hCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999954 45789999998754210000000 0 00000 000 12223334444
Q ss_pred HHHHhcCCCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCC-cccccchhhhHHHHHHhhcCCccEEEeecC
Q 042567 237 TRYSKGSGAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENG-EFQSRTACVQNFNKNVLSYAPCTVGIFVDR 315 (451)
Q Consensus 237 ~~~~~~~~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G-~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr 315 (451)
.+..+. .+++++..+.. +++.+.|++. +.++||||||+|+.+ .. ...++||+.++|+++++|||.++...
T Consensus 80 ~~~~~~--~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~--~~~~~Gs~~~~v~~~a~~PVlvv~~~ 150 (268)
T 3ab8_A 80 RQSALA--AGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGD--GFGGLGSTADRVLRASPVPVLLAPGE 150 (268)
T ss_dssp HHHHHH--TTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCT--TCCSCCHHHHHHHHHCSSCEEEECSS
T ss_pred HHHHHh--CCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCccc--cccccchhHHHHHHhCCCCEEEECCC
Confidence 333332 35667766653 7899999998 899999999999833 32 33478999999999999999875433
Q ss_pred CCCCCCCCCcceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCe
Q 042567 316 GLTYYHPSNICYNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRV 395 (451)
Q Consensus 316 ~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v 395 (451)
.. ..++|++++-|++.+..|+++|.++++..+++++++++..+.. ..++..+++.+.+.... -.+
T Consensus 151 ~~-------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~-----~~~~~l~~~~~~l~~~~---~~~ 215 (268)
T 3ab8_A 151 PV-------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA-----RAEAWALEAEAYLRDHG---VEA 215 (268)
T ss_dssp CC-------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH-----HHHHHHHHHHHHHHHTT---CCE
T ss_pred CC-------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH-----HHHHHHHHHHHHHHHcC---Cce
Confidence 21 1279999999999999999999999999999999999976421 12223334444443321 122
Q ss_pred EEEEEEeCChHHHHHHHHhcCCCcEEEEcccCCCCcchhhhhhHHHHhhcCc
Q 042567 396 ECHEMVANDSKQLMDAIKKEKDFELVIVDFAEGHMMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 396 ~y~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~~~gs~~e~i~~~~~ 447 (451)
. ..+..|.....+++.++++||++||+ .+.++|+||.++.|++|++
T Consensus 216 ~---~~~~~g~~~~~i~~~a~~~dliV~G~---~~~~~~~Gs~~~~vl~~~~ 261 (268)
T 3ab8_A 216 S---ALVLGGDAADHLLRLQGPGDLLALGA---PVRRLVFGSTAERVIRNAQ 261 (268)
T ss_dssp E---EEEECSCHHHHHHHHCCTTEEEEEEC---CCSCCSSCCHHHHHHHHCS
T ss_pred E---EEEeCCChHHHHHHHHHhCCEEEECC---cccccEeccHHHHHHhcCC
Confidence 2 22334433334555555449999999 7889999999999999986
No 6
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.46 E-value=2.6e-13 Score=116.95 Aligned_cols=136 Identities=14% Similarity=0.099 Sum_probs=96.1
Q ss_pred eEEEEecCCCC--HHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccc-cccHHHHHHHHHHHHhcC
Q 042567 167 RILCCIHHEDN--VNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLV-ANSTDRIMRAMTRYSKGS 243 (451)
Q Consensus 167 rILv~v~~~~~--~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~-~~~~~~i~~~f~~~~~~~ 243 (451)
|||+|+|+++. ...+++.|..++.. .+..++++|+++.+........... .+ ... ....++..+.++++.+..
T Consensus 3 ~ILv~vD~s~~~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~ 78 (143)
T 3fdx_A 3 AILVPIDISDKEFTERIISHVESEARI--DDAEVHFLTVIPSLPYYASLGMAYT-AE-LPGMDELREGSETQLKEIAKKF 78 (143)
T ss_dssp EEEEECCTTCSSCCTTHHHHHHHHHHH--HTCEEEEEEEECC------------------CHHHHHHHHHHHHHHHHTTS
T ss_pred EEEEEecCChHhhHHHHHHHHHHHHHh--cCCeEEEEEEecCCccccccccccc-ch-hhhHHHHHHHHHHHHHHHHHHc
Confidence 79999999999 99999999999843 5688999999986432211100000 00 000 334556667777776653
Q ss_pred C-CceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 244 G-AAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 244 ~-~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
. .++.++..+.. +++.+.|++.|++.++||||||.|++|. ...++||+.++|+++++|||+|+
T Consensus 79 ~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~---~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 79 SIPEDRMHFHVAE---GSPKDKILALAKSLPADLVIIASHRPDI---TTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp CCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEEESSCTTC---CSCSSCHHHHHHHHHCSSEEEEE
T ss_pred CCCCCceEEEEEe---cChHHHHHHHHHHhCCCEEEEeCCCCCC---eeeeeccHHHHHHHhCCCCEEEe
Confidence 2 23456666654 7999999999999999999999996333 34478999999999999999875
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.43 E-value=4.1e-13 Score=116.10 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=95.4
Q ss_pred ceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccc-cccHHHHHHHHHHHHhcCC
Q 042567 166 LRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLV-ANSTDRIMRAMTRYSKGSG 244 (451)
Q Consensus 166 ~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~-~~~~~~i~~~f~~~~~~~~ 244 (451)
-|||+|+|++++...+++.|..++.. .+..++++|+++.+......... ...+.... ....+..++.+.+..+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~-- 80 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQR--HQANLTALYVVDDSAYHTPALDP-VLSELLDAEAAHAKDAMRQRQQFVAT-- 80 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEECCCCCCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCcccccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 38999999999999999999999953 56889999999865432211000 00000000 22233334433333332
Q ss_pred Cce-eEeeEEEEcCCCCchHhHHH-HHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 245 AAV-KVQPFKMISPYNTMHQSICK-LVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 245 ~~V-~v~~~~~vs~~~~~~~~I~~-~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
.++ .++..+.. +++.+.|++ .|++.++||||||.|+.+.. ...++|++.++|++++||||+|+
T Consensus 81 ~g~~~~~~~~~~---g~~~~~I~~~~a~~~~~dliV~G~~~~~~~--~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 81 TSAPNLKTEISY---GIPKHTIEDYAKQHPEIDLIVLGATGTNSP--HRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp SSCCCCEEEEEE---ECHHHHHHHHHHHSTTCCEEEEESCCSSCT--TTCSSCHHHHHHHHHCSSEEEEE
T ss_pred cCCcceEEEEec---CChHHHHHHHHHhhcCCCEEEECCCCCCCc--ceEEEcchHHHHhccCCCCEEEe
Confidence 356 66766654 689999999 99999999999999983333 33478999999999999999875
No 8
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.42 E-value=5.1e-13 Score=116.17 Aligned_cols=139 Identities=12% Similarity=0.128 Sum_probs=90.2
Q ss_pred ceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccc-cccHHHHHHHHHHHHhcCC
Q 042567 166 LRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLV-ANSTDRIMRAMTRYSKGSG 244 (451)
Q Consensus 166 ~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~-~~~~~~i~~~f~~~~~~~~ 244 (451)
-|||+|+|++++...+++.|..++.. .+..++++|+++........+......+.... ....+...+.++++.+..
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 83 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQ--IGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL- 83 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 37999999999999999999999954 56889999998753221001000000000000 233445555666665543
Q ss_pred Ccee-EeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeec
Q 042567 245 AAVK-VQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVD 314 (451)
Q Consensus 245 ~~V~-v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvd 314 (451)
+++ ++..+.. +++.+.|++.|++.++||||||.|+.+.. . .++||+.++|+++++|||.|+..
T Consensus 84 -~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~--~-~~~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 84 -GIDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGL--A-LLLGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp -TCCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC-----------CCCHHHHHHHHCSSEEEEEEC
T ss_pred -CCCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCc--C-eEecchHHHHHHhCCCCEEEEeC
Confidence 333 3333333 79999999999999999999999983333 3 48899999999999999988643
No 9
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.41 E-value=2e-12 Score=113.92 Aligned_cols=139 Identities=13% Similarity=0.199 Sum_probs=93.2
Q ss_pred ceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccC----CCCccc-----c-ccc---ccccccc-cccHHH
Q 042567 166 LRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVG----RALPVI-----V-PYN---TQKRRLV-ANSTDR 231 (451)
Q Consensus 166 ~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~----r~~~~~-----~-~~~---~~~~~~~-~~~~~~ 231 (451)
-|||+|+|++++...+++.|..++.. .+..++++|+++... ...... . +.. ..+.... ....++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTL--KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCS--SCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 38999999999999999999999954 568999999997530 000000 0 100 0000000 112233
Q ss_pred HHHHHHHHHhcCCCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEE
Q 042567 232 IMRAMTRYSKGSGAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGI 311 (451)
Q Consensus 232 i~~~f~~~~~~~~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~I 311 (451)
.++.+.+..+. .+++++..+.. +++.+.|++.|++.++||||||.|+.+.+ ...++||+.++|+++++|||.|
T Consensus 84 ~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~--~~~~~GSv~~~vl~~~~~pVlv 156 (162)
T 1mjh_A 84 KMENIKKELED--VGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNL--KEILLGSVTENVIKKSNKPVLV 156 (162)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCC--TTCSSCHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHHHHH--cCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCc--cceEecchHHHHHHhCCCCEEE
Confidence 33333222222 36677766554 78999999999999999999999983333 3447999999999999999988
Q ss_pred ee
Q 042567 312 FV 313 (451)
Q Consensus 312 lv 313 (451)
+.
T Consensus 157 v~ 158 (162)
T 1mjh_A 157 VK 158 (162)
T ss_dssp EC
T ss_pred Ee
Confidence 63
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.40 E-value=6.5e-13 Score=114.88 Aligned_cols=137 Identities=9% Similarity=0.055 Sum_probs=93.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcc--cccccc-cccccc-cccHHHHHHHHHHHHhc
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPV--IVPYNT-QKRRLV-ANSTDRIMRAMTRYSKG 242 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~--~~~~~~-~~~~~~-~~~~~~i~~~f~~~~~~ 242 (451)
|||+|+|++++...+++.|..++.. .+..++++|+++.+...... ...... .+.... ....++.++.+.+..+.
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQL--TGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHH--HCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999954 56889999998754200000 000000 000000 23344444444444433
Q ss_pred CCCceeE---eeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 243 SGAAVKV---QPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 243 ~~~~V~v---~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
.++++ +..+.. +++.+.|++.|++.++||||||.|+.+.. ...++||+.++|++++||||.|+
T Consensus 82 --~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~--~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 82 --LGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGD--KSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp --TTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCC--SCCCCCHHHHHHHHHCSSCEEEC
T ss_pred --cCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCccc--cceeeccHHHHHHhhCCCCEEEC
Confidence 25555 555544 79999999999999999999999983333 33478999999999999999763
No 11
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.39 E-value=8.8e-13 Score=113.02 Aligned_cols=132 Identities=13% Similarity=0.129 Sum_probs=90.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCCCc
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGAA 246 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~ 246 (451)
|||+|+|+++....+++.+..++.. .+..++++|+++.... .. ......+.. ....+...+.++++.+. .+
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~--~~-~~~~~~~~~--~~~~~~~~~~l~~~~~~--~g 74 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEAEA--HGARLIVVHAYEPVPD--YL-GEPFFEEAL--RRRLERAEGVLEEARAL--TG 74 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEECC-------------------CHHHHHHHHHHHHHHHH--HC
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCCCc--cc-cccchHHHH--HHHHHHHHHHHHHHHHH--cC
Confidence 7999999999999999999999953 5678999999873211 10 000000000 12233444455555443 24
Q ss_pred e-eEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 247 V-KVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 247 V-~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
+ +++..+.. +++.+.|++.|++.++||||||+|+.+.. ...++||+.++|+++++|||.|+
T Consensus 75 ~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~--~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 75 VPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGAL--GSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp CCGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCC--SCSSSCHHHHHHHHHCSSCEEEE
T ss_pred CCccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchh--hhhhhccHHHHHHhcCCCCEEEe
Confidence 5 55554443 78999999999999999999999983322 33478999999999999999875
No 12
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.38 E-value=2.9e-12 Score=113.90 Aligned_cols=140 Identities=13% Similarity=0.084 Sum_probs=92.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcc-ccc-------ccccccccc-cccHHHHHHHHH
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPV-IVP-------YNTQKRRLV-ANSTDRIMRAMT 237 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~-~~~-------~~~~~~~~~-~~~~~~i~~~f~ 237 (451)
|||+|+|+++....+++.|..++.. .+..++++|+++........ ... ....+.... ....++.++.+.
T Consensus 7 ~ILv~vD~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 7 KVLFPTDFSEGAYRAVEVFEKRNKM--EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHCCS--CCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999954 56899999998743211000 000 000000000 112233333333
Q ss_pred HHHhcCCCceeEee--EEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecC
Q 042567 238 RYSKGSGAAVKVQP--FKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDR 315 (451)
Q Consensus 238 ~~~~~~~~~V~v~~--~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr 315 (451)
+..+. .++.++. .+.. +++.+.|++.|++.++||||||.|+.+.+ ...++|++.++|+++++|||+|+..+
T Consensus 85 ~~~~~--~g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~--~~~~~Gsv~~~vl~~~~~PVlvv~~~ 157 (170)
T 2dum_A 85 EEVKR--AFRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSL--SHEFLGSTVMRVLRKTKKPVLIIKEV 157 (170)
T ss_dssp HHHHH--HTTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC----TTCCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHH--cCCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCcc--ccceechHHHHHHHhCCCCEEEEccC
Confidence 22221 2455555 4443 78999999999999999999999983332 34478999999999999999886543
No 13
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.37 E-value=2.4e-12 Score=114.27 Aligned_cols=137 Identities=10% Similarity=0.014 Sum_probs=92.6
Q ss_pred cceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEE--EEeeccCCCCcccc-cccccccccccccHHHHHHHHHHHHh
Q 042567 165 ELRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAV--HLIDLVGRALPVIV-PYNTQKRRLVANSTDRIMRAMTRYSK 241 (451)
Q Consensus 165 ~~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~L--hlvel~~r~~~~~~-~~~~~~~~~~~~~~~~i~~~f~~~~~ 241 (451)
--|||+|+|+++....+++.|..++. .+..++++ |+++.+........ .....+ ......++.++.+.+..+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~---~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 91 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG---ADAKLIIASAYLPQHEDARAADILKDESYKV--TGTAPIYEILHDAKERAH 91 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT---TTSEEEEEEECCC----------------------CCTHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC---CCCEEEEEEeeeccCcccccccccccHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999995 45789999 88764321011000 000000 002334555554444433
Q ss_pred cCCCcee-EeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEee
Q 042567 242 GSGAAVK-VQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFV 313 (451)
Q Consensus 242 ~~~~~V~-v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilv 313 (451)
. .+++ ++..+.. +++.+.|++.|++.++||||||+|+.+.+ ...++||+.++|++++||||.|+.
T Consensus 92 ~--~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~--~~~~lGSva~~vl~~a~~PVlvV~ 157 (163)
T 1tq8_A 92 N--AGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTI--AGRLLGSVPANVSRRAKVDVLIVH 157 (163)
T ss_dssp T--TTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSH--HHHHTBBHHHHHHHHTTCEEEEEC
T ss_pred H--cCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCcc--cceeeccHHHHHHHhCCCCEEEEe
Confidence 2 3565 6666553 78999999999999999999999983333 344789999999999999998864
No 14
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.37 E-value=3.4e-14 Score=141.99 Aligned_cols=136 Identities=12% Similarity=0.077 Sum_probs=110.0
Q ss_pred eeEEecCCC----CchhHHHHhhhhhhhhhhhhHH-HhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042567 3 HLWVIPAGP----PLGSALVEKSEVVIRNFFLPFL-FIRIGLLTDIFSIKDWKAFVSLGMILVAAYLGKVWGSLLSLIWF 77 (451)
Q Consensus 3 ~gl~~p~~~----~~~~~l~~ki~~~~~~~fiPlF-F~~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~ 77 (451)
.|+++|+.+ +..++++++++++++.+++|+| |+.+|+++|...+..... ...+.+++..++||.+|+++.+++.
T Consensus 233 ~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~ 311 (388)
T 1zcd_A 233 VGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLA 311 (388)
T ss_dssp HHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHT
T ss_pred HHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889853 4578999999999999999999 999999999854322111 1123555667999999966666666
Q ss_pred ----------cCCchhHHHHHHHhhhhHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHHhHHHHHHHhcC
Q 042567 78 ----------KTSTRNDLLFGCFLNIKGIIELLVFLRWIIYKP--IDVQTFSTLVLFNLVLTAIVTPLISIFYK 139 (451)
Q Consensus 78 ----------~~~~~~s~~~g~~m~~~G~~~li~~~~~~~~g~--i~~~~~~~~v~~~~vtt~i~~pl~~~~~~ 139 (451)
|++|+|+..+|.+++.+|+++++++++|++.+. +.++.+..+++++++++++++.++++.++
T Consensus 312 ~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~~ 385 (388)
T 1zcd_A 312 LRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLR 385 (388)
T ss_dssp SSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC-
T ss_pred HHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999876 35677999999999998888888876543
No 15
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.36 E-value=1.8e-12 Score=114.10 Aligned_cols=128 Identities=9% Similarity=0.121 Sum_probs=92.7
Q ss_pred ceEEEEecC-CCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCC
Q 042567 166 LRILCCIHH-EDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSG 244 (451)
Q Consensus 166 ~rILv~v~~-~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 244 (451)
-|||+|+|+ ++....+++.|..++.. .+..++++|+++.+... .+ +. ....+..++.+.+..+.
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~--~~a~l~llhV~~~~~~~------~~--~~---~~~~~~~l~~~~~~~~~-- 89 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARL--RGVPVYVVHSLPGGGRT------KD--ED---IIEAKETLSWAVSIIRK-- 89 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHH--HTCCEEEEEEECCSTTS------CH--HH---HHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEcCCCcc------cH--HH---HHHHHHHHHHHHHHHHh--
Confidence 379999999 99999999999999954 45789999998744211 00 10 22234444444443332
Q ss_pred CceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccC-CCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 245 AAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHE-NGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 245 ~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~-~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
.++.++..+.+. .+++.+.|++.|++.++||||||.|+ ++. ...++||+.++|++++||||+|+
T Consensus 90 ~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~---~~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 90 EGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPT---GKLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp TTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTT---SCEECCHHHHHHHHHCSSCEEEE
T ss_pred cCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCC---CCEEeccHHHHHHHhCCCCEEEe
Confidence 245555444442 37899999999999999999999998 433 33478999999999999999875
No 16
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.36 E-value=1.2e-12 Score=114.81 Aligned_cols=135 Identities=8% Similarity=0.078 Sum_probs=92.9
Q ss_pred ceEEEEec--CCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccc-cccHHHHHHHHHHHHhc
Q 042567 166 LRILCCIH--HEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLV-ANSTDRIMRAMTRYSKG 242 (451)
Q Consensus 166 ~rILv~v~--~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~-~~~~~~i~~~f~~~~~~ 242 (451)
-|||+|+| +++....+++.|..++.. .+..++++|+++.+..... .... .+.... ....++.++.+.+..+.
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 90 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHD--YDVPLGICSVLESEDINIF--DSLT-PSKIQAKRKHVEDVVAEYVQLAEQ 90 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHH--HTCCEEEEEEECCCCTTCC--CSSH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEeCCCcccc--ccCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999 999999999999999954 5678999999986432111 0000 000000 22233344433333332
Q ss_pred CCCce-eEeeEEEEcCCCCchHhHHHH-HHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 243 SGAAV-KVQPFKMISPYNTMHQSICKL-VEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 243 ~~~~V-~v~~~~~vs~~~~~~~~I~~~-A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
.++ .+++.+..+ +++.+.|++. |++.++||||||.|+.+..+ . ++||+.++|++++||||+|+
T Consensus 91 --~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~--~-~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 91 --RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS--K-IAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp --HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS--S-SCSCHHHHHHHHCSSEEEEE
T ss_pred --cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc--e-eecchHHHHHHhCCCCEEEe
Confidence 245 366555543 7899999999 99999999999999844443 2 79999999999999999875
No 17
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.33 E-value=1.2e-11 Score=110.55 Aligned_cols=144 Identities=9% Similarity=0.125 Sum_probs=88.2
Q ss_pred ceEEEEecCCC---------CHHHHHHHHHHhCCCC-CCCceEEEEEEeeccCCCCc----ccc-cccccccccc-cccH
Q 042567 166 LRILCCIHHED---------NVNGIINLLRASNPTE-MNPICAYAVHLIDLVGRALP----VIV-PYNTQKRRLV-ANST 229 (451)
Q Consensus 166 ~rILv~v~~~~---------~~~~ll~la~~la~~~-~~~~~v~~Lhlvel~~r~~~----~~~-~~~~~~~~~~-~~~~ 229 (451)
-|||+|+|+++ ....+++.+..++..+ ....+++++|+++....... ... .....+.... ....
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG 85 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence 38999999999 9999999999976332 24689999999864321110 000 0000000000 1112
Q ss_pred HHHHHHHHHHHhcCCCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccE
Q 042567 230 DRIMRAMTRYSKGSGAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTV 309 (451)
Q Consensus 230 ~~i~~~f~~~~~~~~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V 309 (451)
++.++.+.+..+. .++.++..+.. +++.+.|++.|++.++||||||.|+.+.+ ...++||+.++|+++++|||
T Consensus 86 ~~~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~--~~~~~Gsva~~vl~~a~~pV 158 (175)
T 2gm3_A 86 LHLLEFFVNKCHE--IGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRF--QKVFVGTVSAFCVKHAECPV 158 (175)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC----------CHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHH--CCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChh--hhhhcCchHHHHHhCCCCCE
Confidence 2333333332222 25666665553 78999999999999999999999983332 33478999999999999999
Q ss_pred EEeecCC
Q 042567 310 GIFVDRG 316 (451)
Q Consensus 310 ~Ilvdr~ 316 (451)
+|+....
T Consensus 159 lvv~~~~ 165 (175)
T 2gm3_A 159 MTIKRNA 165 (175)
T ss_dssp EEEECCG
T ss_pred EEEcCCc
Confidence 8876543
No 18
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.32 E-value=3.2e-12 Score=109.43 Aligned_cols=132 Identities=8% Similarity=0.028 Sum_probs=91.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHhC-CCCCCCceEEEEEEeeccCCCCcccccccccccccc-c-ccHHHHHHHHHHHHhcC
Q 042567 167 RILCCIHHEDNVNGIINLLRASN-PTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLV-A-NSTDRIMRAMTRYSKGS 243 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la-~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~-~-~~~~~i~~~f~~~~~~~ 243 (451)
|||+|+|++++...+++.|..++ .. .+..++++|+++.+...... .....+.... . ...++.++.+.+..+.
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 77 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEA--VLAAYDEIEMKEEEKAKLLTQKFSTFFTE- 77 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCCCccccc--ccCcHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 79999999999999999999999 54 56899999998754321110 0000000000 1 2333444444443332
Q ss_pred CCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 244 GAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 244 ~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
.+++++..+.. +++.+.|++.|+ ++||||||.|+.+.. ...+ ||+.++|++++||||.|+
T Consensus 78 -~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~~--~~~~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 78 -KGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSFL--NKIF-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp -TTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTSTT--SSCC-CCTTCHHHHHCSSCEEEE
T ss_pred -CCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcchH--HHHh-CcHHHHHHhcCCCCEEEe
Confidence 46777766654 789999999997 999999999984333 2335 999999999999999875
No 19
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.32 E-value=6.9e-12 Score=107.73 Aligned_cols=134 Identities=8% Similarity=0.075 Sum_probs=91.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeec-cCCCCcccccccccccccccccHHHHHHHHHHHHhcCCC
Q 042567 167 RILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDL-VGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGA 245 (451)
Q Consensus 167 rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel-~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 245 (451)
|||+|+|+++....+++.|..++.. .+..++++|+++- +..... +......+.. ....+...+.++++.+..
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~l~~~~~~~-- 76 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIAKR--HDAKLSIIHVDVNFSDLYTG-LIDVNMSSMQ--DRISTETQKALLDLAESV-- 76 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEECCGGGCCC-CEEHHHHHHT--TCCCCHHHHHHHHHHHHS--
T ss_pred eEEEEecCchhhHHHHHHHHHHHHh--cCCEEEEEEEecCchhhhcc-ccccchHHHH--HHHHHHHHHHHHHHHHHc--
Confidence 7999999999999999999999953 5678999999842 211111 0000000000 122234445555555443
Q ss_pred ceeE-eeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecC
Q 042567 246 AVKV-QPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDR 315 (451)
Q Consensus 246 ~V~v-~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr 315 (451)
++++ +..+.. +++.+.|++.|++.++||||||+| .+..+ .+|++.++|++++||||+|+..+
T Consensus 77 ~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~-~~~~~----~lgs~~~~vl~~~~~pVlvv~~~ 139 (141)
T 1jmv_A 77 DYPISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHH-QDFWS----KLMSSTRQVMNTIKIDMLVVPLR 139 (141)
T ss_dssp SSCCCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEEC-CCCHH----HHHHHHHHHHTTCCSEEEEEECC
T ss_pred CCCceEEEEec---CCHHHHHHHHHHhcCCCEEEEeCC-Cchhh----hhcchHHHHHhcCCCCEEEeeCC
Confidence 3443 333332 789999999999999999999998 55542 25999999999999999887543
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.13 E-value=2.3e-10 Score=97.83 Aligned_cols=128 Identities=11% Similarity=0.031 Sum_probs=83.3
Q ss_pred ceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEe-ec-cCCCC-cc-cccccccccccccccHHHHHHHHHHH-H
Q 042567 166 LRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLI-DL-VGRAL-PV-IVPYNTQKRRLVANSTDRIMRAMTRY-S 240 (451)
Q Consensus 166 ~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlv-el-~~r~~-~~-~~~~~~~~~~~~~~~~~~i~~~f~~~-~ 240 (451)
-|||+|+|+++....+++.+..++.. .+..++++|++ +. +.... .. ..+......+......++.++.++.+ .
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEK--LGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLT 82 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTT--TCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHH--cCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 38999999999999999999999954 56899999998 63 10000 00 00000000000011222333322221 1
Q ss_pred hcCCCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEe
Q 042567 241 KGSGAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIF 312 (451)
Q Consensus 241 ~~~~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Il 312 (451)
. ..+ .++..+.. +++.+.|++.|++.++||||||.|+ . |+.++|+++++|||+|+
T Consensus 83 ~--~~~-~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~g--~---------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 83 G--STE-IPGVEYRI---GPLSEEVKKFVEGKGYELVVWACYP--S---------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp S--CCC-CCCEEEEC---SCHHHHHHHHHTTSCCSEEEECSCC--G---------GGTHHHHHHSSSEEEEC
T ss_pred c--cCC-cceEEEEc---CCHHHHHHHHHHhcCCCEEEEeCCC--C---------chHHHHHHhCCCceEee
Confidence 1 223 55555442 7899999999999999999999984 2 67899999999999874
No 21
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.10 E-value=1.8e-10 Score=111.51 Aligned_cols=137 Identities=12% Similarity=-0.004 Sum_probs=92.8
Q ss_pred cceEEEEecCCCC-------HHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHH
Q 042567 165 ELRILCCIHHEDN-------VNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMT 237 (451)
Q Consensus 165 ~~rILv~v~~~~~-------~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 237 (451)
.-|||+|+|+++. ...+++.+..++.. .+..++++|+++.+..... .+. .... ....+...+.++
T Consensus 134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~--~~~-~~~~---~~~~~~~~~~l~ 205 (290)
T 3mt0_A 134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGL--AKATLHVISAHPSPMLSSA--DPT-FQLS---ETIEARYREACR 205 (290)
T ss_dssp TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEEEC-----------C-HHHH---HHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHH--cCCeEEEEEEecCcccccc--Cch-hHHH---HHHHHHHHHHHH
Confidence 3489999999998 89999999999854 5688999999875432111 010 0000 122334445555
Q ss_pred HHHhcCCCcee-EeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecCC
Q 042567 238 RYSKGSGAAVK-VQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRG 316 (451)
Q Consensus 238 ~~~~~~~~~V~-v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~ 316 (451)
++.+.. ++. ++..+.- +++.+.|++.|++.++||||||.|+.+.+ ...++||+.++|+++++|||+|+..++
T Consensus 206 ~~~~~~--g~~~~~~~v~~---g~~~~~I~~~a~~~~~dLiVmG~~g~~~~--~~~~~Gsv~~~vl~~~~~pVLvv~~~~ 278 (290)
T 3mt0_A 206 TFQAEY--GFSDEQLHIEE---GPADVLIPRTAQKLDAVVTVIGTVARTGL--SGALIGNTAEVVLDTLESDVLVLKPDD 278 (290)
T ss_dssp HHHHHH--TCCTTTEEEEE---SCHHHHHHHHHHHHTCSEEEEECCSSCCG--GGCCSCHHHHHHHTTCSSEEEEECCHH
T ss_pred HHHHHc--CCCcceEEEec---cCHHHHHHHHHHhcCCCEEEECCCCCcCC--cceecchHHHHHHhcCCCCEEEECCCC
Confidence 555443 332 2333332 78999999999999999999999983333 334899999999999999998875443
No 22
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.05 E-value=9.4e-10 Score=94.69 Aligned_cols=119 Identities=9% Similarity=0.055 Sum_probs=81.0
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccC----------chhhhcHHHHHHHHHhccCCCC--C
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVES----------ENDRCLDDAVTKEFMVGNVGNT--R 394 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~----------~~~~~~~~~~l~e~~~~~~~~~--~ 394 (451)
++|++++-|++.++.|+++|.++|+..+++++++++.++...... +..++..++.++++.......+ .
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 85 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAPN 85 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 799999999999999999999999999999999999876432211 1112233445555543321111 2
Q ss_pred eEEEEEEeCCh-HHHHH-HHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 395 VECHEMVANDS-KQLMD-AIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 395 v~y~e~~v~~g-~~~~~-~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
+.+ .....+. .++.+ .+++. ++|||+||++++. +.++|+||.++.|++||+
T Consensus 86 ~~~-~~~~g~~~~~I~~~~a~~~-~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~ 139 (146)
T 3s3t_A 86 LKT-EISYGIPKHTIEDYAKQHP-EIDLIVLGATGTNSPHRVAVGSTTSYVVDHAP 139 (146)
T ss_dssp CEE-EEEEECHHHHHHHHHHHST-TCCEEEEESCCSSCTTTCSSCHHHHHHHHHCS
T ss_pred eEE-EEecCChHHHHHHHHHhhc-CCCEEEECCCCCCCcceEEEcchHHHHhccCC
Confidence 222 1222232 22333 33333 8999999999865 999999999999999987
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.02 E-value=7.8e-10 Score=108.11 Aligned_cols=145 Identities=11% Similarity=0.055 Sum_probs=95.4
Q ss_pred cceEEEEecCCCC-------HHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccc-cccHHHHHHHH
Q 042567 165 ELRILCCIHHEDN-------VNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLV-ANSTDRIMRAM 236 (451)
Q Consensus 165 ~~rILv~v~~~~~-------~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~-~~~~~~i~~~f 236 (451)
.-|||+|+|+++. ...+++.+..++.....+..++++|+.+..........+.. +.+.. ....+...+.+
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 233 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDF--DPNLYNNALRGQHLIAM 233 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTC--CHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcc--cHHHHHHHHHHHHHHHH
Confidence 3589999999884 57888888877743201567999999876543211000000 00000 22334445566
Q ss_pred HHHHhcCCCceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecCC
Q 042567 237 TRYSKGSGAAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRG 316 (451)
Q Consensus 237 ~~~~~~~~~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~ 316 (451)
+.+.+... ...++..+.- ++..+.|++.|++.++||||||.|+.+.+ ...++|++.++|+++++|||+|+..++
T Consensus 234 ~~~~~~~~-~~~~~~~v~~---g~~~~~I~~~a~~~~~dLiV~G~~g~~~~--~~~~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 234 KELRQKFS-IPEEKTHVKE---GLPEQVIPQVCEELNAGIVVLGILGRTGL--SAAFLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp HHHHHHTT-CCGGGEEEEE---SCHHHHHHHHHHHTTEEEEEEECCSCCST--HHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred HHHHHHhC-CCcccEEEec---CCcHHHHHHHHHHhCCCEEEEeccCccCC--ccccccHHHHHHHhhCCCCEEEECCCC
Confidence 66665431 1123333332 78899999999999999999999983333 345899999999999999999986665
Q ss_pred C
Q 042567 317 L 317 (451)
Q Consensus 317 ~ 317 (451)
+
T Consensus 308 ~ 308 (319)
T 3olq_A 308 F 308 (319)
T ss_dssp C
T ss_pred C
Confidence 3
No 24
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.02 E-value=1.1e-09 Score=93.46 Aligned_cols=118 Identities=11% Similarity=0.105 Sum_probs=78.8
Q ss_pred eeEEEEecCCcchHHHHHHHHHHh-cCCCeEEEEEEEecCCCCccC---------chhh-hcHHHHHHHHHhccCCCCCe
Q 042567 327 YNVAVFFLGGPDDREAMALVSRIS-SHPGMSITIFRIDLLENSVES---------ENDR-CLDDAVTKEFMVGNVGNTRV 395 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma-~~~~~~ltvv~v~~~~~~~~~---------~~~~-~~~~~~l~e~~~~~~~~~~v 395 (451)
++|++++-|++.+..|+++|.++| +..+++++++++.++...... +..+ +..++.++++...... ..+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~g~ 80 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTE-KGI 80 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH-CCC
Confidence 689999999999999999999999 999999999999876432110 0011 2233444444432211 112
Q ss_pred EEEEEEeCChHHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 396 ECHEMVANDSKQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 396 ~y~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
.+ +..+..|.....+++.+.++|||+||++++. +.++| ||.++.|++||+
T Consensus 81 ~~-~~~v~~g~~~~~I~~~a~~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~ 131 (138)
T 3idf_A 81 NP-FVVIKEGEPVEMVLEEAKDYNLLIIGSSENSFLNKIF-ASHQDDFIQKAP 131 (138)
T ss_dssp CC-EEEEEESCHHHHHHHHHTTCSEEEEECCTTSTTSSCC-CCTTCHHHHHCS
T ss_pred Ce-EEEEecCChHHHHHHHHhcCCEEEEeCCCcchHHHHh-CcHHHHHHhcCC
Confidence 22 1222233222233333338999999999865 88999 999999999997
No 25
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.01 E-value=8.8e-10 Score=94.92 Aligned_cols=119 Identities=12% Similarity=0.123 Sum_probs=80.5
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCC-C---------cc----CchhhhcHHHHHHHHHhc----
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLEN-S---------VE----SENDRCLDDAVTKEFMVG---- 388 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~-~---------~~----~~~~~~~~~~~l~e~~~~---- 388 (451)
++|++++-|++.++.|+++|.++|+..+++++++++.++.. . .. .+..++..++.++++...
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATEL 82 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999986532 0 00 111122334444444422
Q ss_pred cCCCCCeEEEEEEeCCh-HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 389 NVGNTRVECHEMVANDS-KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 389 ~~~~~~v~y~e~~v~~g-~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
....+.+.. .....+. .++.+.+++. ++|||+||++++. +.++++||.++.+++||+
T Consensus 83 g~~~~~~~~-~~~~g~~~~~I~~~a~~~-~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~ 141 (147)
T 3hgm_A 83 GVPADKVRA-FVKGGRPSRTIVRFARKR-ECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAH 141 (147)
T ss_dssp TCCGGGEEE-EEEESCHHHHHHHHHHHT-TCSEEEECSSCTTCCSCCCCCHHHHHHHHHCS
T ss_pred CCCccceEE-EEecCCHHHHHHHHHHHh-CCCEEEEeCCCCccccceeeccHHHHHHhhCC
Confidence 111111122 2233332 3334444444 8999999999865 999999999999999997
No 26
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.99 E-value=7.1e-10 Score=97.31 Aligned_cols=118 Identities=7% Similarity=0.019 Sum_probs=81.4
Q ss_pred eeEEEEecC-CcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccC-CCCCeEEEEEEeCC
Q 042567 327 YNVAVFFLG-GPDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNV-GNTRVECHEMVAND 404 (451)
Q Consensus 327 ~~I~v~f~G-g~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~-~~~~v~y~e~~v~~ 404 (451)
++|++++-| ++.++.|+++|.++|+..+++++++++.++..... +...+..++.++++..... ..-.+.. +..+..
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~~~~~-~~~v~~ 102 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK-DEDIIEAKETLSWAVSIIRKEGAEGEE-HLLVRG 102 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC-HHHHHHHHHHHHHHHHHHHHTTCCEEE-EEEESS
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc-HHHHHHHHHHHHHHHHHHHhcCCCceE-EEEecC
Confidence 799999999 99999999999999999999999999987543211 1222223344444432211 1112222 233444
Q ss_pred h---HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 405 S---KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 405 g---~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
| .++++.+++. ++||||||++++. +.++++||.++.|++||.
T Consensus 103 G~~~~~I~~~a~~~-~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~ 148 (155)
T 3dlo_A 103 KEPPDDIVDFADEV-DAIAIVIGIRKRSPTGKLIFGSVARDVILKAN 148 (155)
T ss_dssp SCHHHHHHHHHHHT-TCSEEEEECCEECTTSCEECCHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHc-CCCEEEECCCCCCCCCCEEeccHHHHHHHhCC
Confidence 4 3333444444 8999999999865 999999999999999986
No 27
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.98 E-value=1.5e-09 Score=93.15 Aligned_cols=119 Identities=10% Similarity=0.040 Sum_probs=77.6
Q ss_pred eeEEEEecCCcc--hHHHHHHHHHHhcCCCeEEEEEEEecCCCCc--------c-CchhhhcHH---HHHHHHHhccCCC
Q 042567 327 YNVAVFFLGGPD--DREAMALVSRISSHPGMSITIFRIDLLENSV--------E-SENDRCLDD---AVTKEFMVGNVGN 392 (451)
Q Consensus 327 ~~I~v~f~Gg~d--dreAl~~a~rma~~~~~~ltvv~v~~~~~~~--------~-~~~~~~~~~---~~l~e~~~~~~~~ 392 (451)
++|++++-|+++ +..|+++|.++|+..+++++++++.++.... . .+..++..+ +.++++.......
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 689999999999 9999999999999999999999998753211 0 011111222 2233333322111
Q ss_pred -CCeEEEEEEeCCh-HHHHHHHHhcCCCcEEEEcccCCCCcchhhhhhHHHHhhcCc
Q 042567 393 -TRVECHEMVANDS-KQLMDAIKKEKDFELVIVDFAEGHMMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 393 -~~v~y~e~~v~~g-~~~~~~i~~~~~~DLiivG~~~~~~~~~~~gs~~e~i~~~~~ 447 (451)
..+.+ .....+. .++.+.+++. ++|||+||++++.+.++++||.++.+++||+
T Consensus 82 ~~~v~~-~~~~g~~~~~I~~~a~~~-~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~~ 136 (143)
T 3fdx_A 82 EDRMHF-HVAEGSPKDKILALAKSL-PADLVIIASHRPDITTYLLGSNAAAVVRHAE 136 (143)
T ss_dssp GGGEEE-EEEESCHHHHHHHHHHHT-TCSEEEEESSCTTCCSCSSCHHHHHHHHHCS
T ss_pred CCceEE-EEEecChHHHHHHHHHHh-CCCEEEEeCCCCCCeeeeeccHHHHHHHhCC
Confidence 12222 2222332 3334444444 8999999999645999999999999999986
No 28
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.97 E-value=1.8e-09 Score=92.06 Aligned_cols=118 Identities=11% Similarity=0.098 Sum_probs=80.3
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCC--Cc---cC---chhhhcHHHHHHHHHhccCCCCCeEEE
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLEN--SV---ES---ENDRCLDDAVTKEFMVGNVGNTRVECH 398 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~--~~---~~---~~~~~~~~~~l~e~~~~~~~~~~v~y~ 398 (451)
++|++++-|++.++.|+++|.++|+..+++++++++..+.. .. .+ +..++..++.++++.... +...+.+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~ 81 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALT-GVPKEDAL 81 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHH-CCCGGGEE
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHc-CCCccEEE
Confidence 68999999999999999999999999999999999986532 11 00 111223345555554431 11022221
Q ss_pred EEEeCCh-HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 399 EMVANDS-KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 399 e~~v~~g-~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
....+. .++.+.+++. ++|||+||++++. +.++++||.++.|++||+
T Consensus 82 -~~~g~~~~~I~~~a~~~-~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~ 130 (137)
T 2z08_A 82 -LLEGVPAEAILQAARAE-KADLIVMGTRGLGALGSLFLGSQSQRVVAEAP 130 (137)
T ss_dssp -EEESSHHHHHHHHHHHT-TCSEEEEESSCTTCCSCSSSCHHHHHHHHHCS
T ss_pred -EEecCHHHHHHHHHHHc-CCCEEEECCCCCchhhhhhhccHHHHHHhcCC
Confidence 222332 3344444444 8999999999865 899999999999999986
No 29
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.97 E-value=3.4e-09 Score=93.05 Aligned_cols=119 Identities=7% Similarity=0.018 Sum_probs=79.6
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCC-----C---Cc-------cCc------h---hhhcHHHHH
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLE-----N---SV-------ESE------N---DRCLDDAVT 382 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~-----~---~~-------~~~------~---~~~~~~~~l 382 (451)
++|++++-|++++..|+++|.++|+..+++++++++..+. . .. ..+ . .++..++.+
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKM 85 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999998653 1 11 110 0 011223445
Q ss_pred HHHHhccCCCCCeEEE-EEEeCCh-HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 383 KEFMVGNVGNTRVECH-EMVANDS-KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 383 ~e~~~~~~~~~~v~y~-e~~v~~g-~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
+++..... ...+.+. .....+. .++.+++++. ++||||||++++. +.++++||.++.|++||+
T Consensus 86 ~~~~~~~~-~~g~~~~~~v~~G~~~~~I~~~a~~~-~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~ 151 (162)
T 1mjh_A 86 ENIKKELE-DVGFKVKDIIVVGIPHEEIVKIAEDE-GVDIIIMGSHGKTNLKEILLGSVTENVIKKSN 151 (162)
T ss_dssp HHHHHHHH-HTTCEEEEEEEEECHHHHHHHHHHHT-TCSEEEEESCCSSCCTTCSSCHHHHHHHHHCC
T ss_pred HHHHHHHH-HcCCceEEEEcCCCHHHHHHHHHHHc-CCCEEEEcCCCCCCccceEecchHHHHHHhCC
Confidence 54443221 1112221 1222232 3334444444 8999999999765 999999999999999986
No 30
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.94 E-value=1.9e-09 Score=93.31 Aligned_cols=117 Identities=13% Similarity=0.139 Sum_probs=73.1
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCc-----------cC---chhhhcHHHHHHHHHhccCCC
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSV-----------ES---ENDRCLDDAVTKEFMVGNVGN 392 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~-----------~~---~~~~~~~~~~l~e~~~~~~~~ 392 (451)
++|++++-|++.++.|+++|.++|+..+++++++++..+.... .. +...+..++.++++..+. +.
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 85 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL-GI 85 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH-TC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 7999999999999999999999999999999999998653210 00 111223344455554333 11
Q ss_pred CCeEEEEEEeCCh-HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 393 TRVECHEMVANDS-KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 393 ~~v~y~e~~v~~g-~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
..+.. .....+. .++.+.+++. ++|||+||++++. +. +++||.++.|++||+
T Consensus 86 ~~~~~-~~~~g~~~~~I~~~a~~~-~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~ 139 (150)
T 3tnj_A 86 DPAHR-WLVWGEPREEIIRIAEQE-NVDLIVVGSHGRHGLA-LLLGSTANSVLHYAK 139 (150)
T ss_dssp CGGGE-EEEESCHHHHHHHHHHHT-TCSEEEEEEC---------CCCHHHHHHHHCS
T ss_pred CcceE-EEecCCHHHHHHHHHHHc-CCCEEEEecCCCCCcC-eEecchHHHHHHhCC
Confidence 21111 2222333 3334444444 8999999999865 77 999999999999997
No 31
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.94 E-value=3.2e-09 Score=93.92 Aligned_cols=117 Identities=12% Similarity=0.071 Sum_probs=76.7
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEE--EEecCCCC-c-----cC---chhhhcHHHHHHHHHhccCCCCCe
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIF--RIDLLENS-V-----ES---ENDRCLDDAVTKEFMVGNVGNTRV 395 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv--~v~~~~~~-~-----~~---~~~~~~~~~~l~e~~~~~~~~~~v 395 (451)
++|++++-|++.++.|+++|.++|+ .+++++++ ++.++... . .. +..++..++.++++...... ..+
T Consensus 18 ~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~gv 95 (163)
T 1tq8_A 18 KTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHN-AGA 95 (163)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHT-TTC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHH-cCC
Confidence 7999999999999999999999999 99999999 88654321 0 00 11122334455554432211 112
Q ss_pred E-EEEEEeCCh---HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 396 E-CHEMVANDS---KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 396 ~-y~e~~v~~g---~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
. +. ..+..| .++++++++. ++||||||++++. +.++++||.++.|++||+
T Consensus 96 ~~v~-~~v~~G~~~~~I~~~a~~~-~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~ 150 (163)
T 1tq8_A 96 KNVE-ERPIVGAPVDALVNLADEE-KADLLVVGNVGLSTIAGRLLGSVPANVSRRAK 150 (163)
T ss_dssp CEEE-EEEECSSHHHHHHHHHHHT-TCSEEEEECCCCCSHHHHHTBBHHHHHHHHTT
T ss_pred CeEE-EEEecCCHHHHHHHHHHhc-CCCEEEECCCCCCcccceeeccHHHHHHHhCC
Confidence 1 22 222233 3333444444 8999999999765 899999999999999986
No 32
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.93 E-value=2.8e-09 Score=94.44 Aligned_cols=120 Identities=8% Similarity=-0.051 Sum_probs=78.0
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCc---------------c-Cch---hhhcHHHHHHHHHh
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSV---------------E-SEN---DRCLDDAVTKEFMV 387 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~---------------~-~~~---~~~~~~~~l~e~~~ 387 (451)
++|++++-|++++..|+++|.++|+..+++++++++..+.... . .+. .++..++.++++..
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAE 85 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999998653210 0 010 11222344444433
Q ss_pred ccC-CCCCeEE-EEEEeCCh-HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 388 GNV-GNTRVEC-HEMVANDS-KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 388 ~~~-~~~~v~y-~e~~v~~g-~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
... ..-.+.. ......+. .++.+.+++. ++||||||++++. +.++++||.++.|++||+
T Consensus 86 ~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~-~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~ 148 (170)
T 2dum_A 86 EVKRAFRAKNVRTIIRFGIPWDEIVKVAEEE-NVSLIILPSRGKLSLSHEFLGSTVMRVLRKTK 148 (170)
T ss_dssp HHHHHTTCSEEEEEEEEECHHHHHHHHHHHT-TCSEEEEESCCCCC--TTCCCHHHHHHHHHCS
T ss_pred HHHHcCCceeeeeEEecCChHHHHHHHHHHc-CCCEEEECCCCCCccccceechHHHHHHHhCC
Confidence 210 0111222 11222232 3344444444 8999999999765 899999999999999987
No 33
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.91 E-value=3.5e-09 Score=102.42 Aligned_cols=121 Identities=11% Similarity=0.056 Sum_probs=90.0
Q ss_pred cceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCC
Q 042567 165 ELRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSG 244 (451)
Q Consensus 165 ~~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 244 (451)
.-|||+|+|+++....+++.+..++.. .+..++++|+.+... . ....+.+.+.++.
T Consensus 170 ~~~Ilv~~d~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~--------~--------~~~l~~~~~~l~~------ 225 (294)
T 3loq_A 170 FDRVLVAYDFSKWADRALEYAKFVVKK--TGGELHIIHVSEDGD--------K--------TADLRVMEEVIGA------ 225 (294)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEECSSSC--------C--------HHHHHHHHHHHHH------
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhhh--cCCEEEEEEEccCch--------H--------HHHHHHHHHHHHH------
Confidence 358999999999999999999999843 457899999976322 0 1222333332322
Q ss_pred CceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeec
Q 042567 245 AAVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVD 314 (451)
Q Consensus 245 ~~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvd 314 (451)
.++.++..+. .+++.+.|++.|++.++||||||.++.+.+ ...++|++.++|+++++|||+++..
T Consensus 226 ~~~~~~~~~~---~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~--~~~~~Gs~~~~vl~~~~~pvLvv~~ 290 (294)
T 3loq_A 226 EGIEVHVHIE---SGTPHKAILAKREEINATTIFMGSRGAGSV--MTMILGSTSESVIRRSPVPVFVCKR 290 (294)
T ss_dssp TTCCEEEEEE---CSCHHHHHHHHHHHTTCSEEEEECCCCSCH--HHHHHHCHHHHHHHHCSSCEEEECS
T ss_pred cCCcEEEEEe---cCCHHHHHHHHHHhcCcCEEEEeCCCCCCc--cceeeCcHHHHHHhcCCCCEEEECC
Confidence 2455655443 279999999999999999999999984333 3448999999999999999988643
No 34
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.85 E-value=3.5e-09 Score=92.43 Aligned_cols=118 Identities=10% Similarity=0.044 Sum_probs=77.4
Q ss_pred eeEEEEec--CCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCcc-----C---chhhhcHHHHHHHHHhccC--CCCC
Q 042567 327 YNVAVFFL--GGPDDREAMALVSRISSHPGMSITIFRIDLLENSVE-----S---ENDRCLDDAVTKEFMVGNV--GNTR 394 (451)
Q Consensus 327 ~~I~v~f~--Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~-----~---~~~~~~~~~~l~e~~~~~~--~~~~ 394 (451)
++|++++- |+++.+.|+++|.++|+..+++++++++..+..... . +..++..++.++++..... +...
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 95 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQ 95 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 79999999 999999999999999999999999999987643210 0 1112223344444432211 1112
Q ss_pred eEEEEEEeCChHHHHHHHHh-cC--CCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 395 VECHEMVANDSKQLMDAIKK-EK--DFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 395 v~y~e~~v~~g~~~~~~i~~-~~--~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
+.+ ....+|.....+++. ++ ++|||++|++++. +. .++||.++.|++||+
T Consensus 96 ~~~--~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~ 149 (156)
T 3fg9_A 96 VEP--LVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAP 149 (156)
T ss_dssp EEE--EEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCS
T ss_pred eEE--EEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCC
Confidence 222 222223322334444 32 8999999999866 65 589999999999986
No 35
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.84 E-value=6.5e-09 Score=101.32 Aligned_cols=134 Identities=10% Similarity=0.061 Sum_probs=88.8
Q ss_pred ceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCCC
Q 042567 166 LRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSGA 245 (451)
Q Consensus 166 ~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 245 (451)
-+||+|+|+++....+++.+..++.. ....++++|+.+..... .. ......+.. ....+.+.+.++.+.+.. .
T Consensus 172 ~~Ilv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~-~~-~~~~~~~~~--~~~~~~l~~~~~~~~~~~-~ 244 (309)
T 3cis_A 172 APVLVGVDGSSASELATAIAFDEASR--RNVDLVALHAWSDVDVS-EW-PGIDWPATQ--SMAEQVLAERLAGWQERY-P 244 (309)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHHH--TTCCEEEEEESCSSCCT-TC-SSCCHHHHH--HHHHHHHHHHHTTHHHHC-T
T ss_pred CeEEEEeCCChHHHHHHHHHHHHHHh--cCCEEEEEEEeeccccc-CC-CcccHHHHH--HHHHHHHHHHHHHHHhhC-C
Confidence 48999999999999999999999853 45779999998643211 00 000000000 111112222333333221 3
Q ss_pred ceeEeeEEEEcCCCCchHhHHHHHHhCCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEee
Q 042567 246 AVKVQPFKMISPYNTMHQSICKLVEDNLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFV 313 (451)
Q Consensus 246 ~V~v~~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilv 313 (451)
++.++..+.. +++.+.|++.|+ ++||||||.++.+.+ ...++||+.++|+++++|||+|+.
T Consensus 245 ~~~~~~~~~~---g~~~~~I~~~a~--~adliV~G~~~~~~~--~~~l~Gsv~~~vl~~~~~pVlvv~ 305 (309)
T 3cis_A 245 NVAITRVVVR---DQPARQLVQRSE--EAQLVVVGSRGRGGY--AGMLVGSVGETVAQLARTPVIVAR 305 (309)
T ss_dssp TSCEEEEEES---SCHHHHHHHHHT--TCSEEEEESSCSSCC--TTCSSCHHHHHHHHHCSSCEEEEC
T ss_pred CCcEEEEEEc---CCHHHHHHHhhC--CCCEEEECCCCCCCc--cccccCcHHHHHHhcCCCCEEEeC
Confidence 5666655442 789999999996 999999999983333 344789999999999999998863
No 36
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.73 E-value=6.5e-08 Score=85.99 Aligned_cols=119 Identities=11% Similarity=0.122 Sum_probs=69.0
Q ss_pred eeEEEEecCCc---------chHHHHHHHHHHh-cC--CCeEEEEEEEecCCC--Cc------cCc--------hhhhcH
Q 042567 327 YNVAVFFLGGP---------DDREAMALVSRIS-SH--PGMSITIFRIDLLEN--SV------ESE--------NDRCLD 378 (451)
Q Consensus 327 ~~I~v~f~Gg~---------ddreAl~~a~rma-~~--~~~~ltvv~v~~~~~--~~------~~~--------~~~~~~ 378 (451)
++|++++-|++ .++.|+++|.+++ +. .+++++++++..+.. .. ... ..++..
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG 85 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence 79999999999 8899999999986 54 699999999975321 10 000 001112
Q ss_pred HHHHHHHHhccCCCCCeEEEE-EEeCCh-HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 379 DAVTKEFMVGNVGNTRVECHE-MVANDS-KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 379 ~~~l~e~~~~~~~~~~v~y~e-~~v~~g-~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
++.++++..... ...+.+.. ....+. .++.+.+++. ++||||||++++. +.++++||.++.|++||+
T Consensus 86 ~~~l~~~~~~~~-~~g~~~~~~v~~G~~~~~I~~~a~~~-~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~ 155 (175)
T 2gm3_A 86 LHLLEFFVNKCH-EIGVGCEAWIKTGDPKDVICQEVKRV-RPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAE 155 (175)
T ss_dssp HHHHHHHHHHHH-HHTCEEEEEEEESCHHHHHHHHHHHH-CCSEEEEEECCCC--------CHHHHHHHHCS
T ss_pred HHHHHHHHHHHH-HCCCceEEEEecCCHHHHHHHHHHHh-CCCEEEEeCCCCChhhhhhcCchHHHHHhCCC
Confidence 345555443211 01122221 222222 3333444444 8999999999866 899999999999999986
No 37
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.64 E-value=1.9e-07 Score=79.63 Aligned_cols=115 Identities=12% Similarity=0.112 Sum_probs=75.3
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC-CC-Ccc---------CchhhhcHHHHHHHHHhccCCCCCe
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL-EN-SVE---------SENDRCLDDAVTKEFMVGNVGNTRV 395 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~-~~-~~~---------~~~~~~~~~~~l~e~~~~~~~~~~v 395 (451)
++|++++-|++.+..|+++|.++|+..+++++++++..+ .. ... .+...+..++.++++.... +....
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 81 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESV-DYPIS 81 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHS-SSCCC
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHc-CCCce
Confidence 689999999999999999999999999999999999843 11 110 0001122345555554433 11111
Q ss_pred EEEEEEeCCh-HHHHHHHHhcCCCcEEEEcccCCC-CcchhhhhhHHHHhhcCc
Q 042567 396 ECHEMVANDS-KQLMDAIKKEKDFELVIVDFAEGH-MMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 396 ~y~e~~v~~g-~~~~~~i~~~~~~DLiivG~~~~~-~~~~~~gs~~e~i~~~~~ 447 (451)
. ......+. .++.+.+++. ++|||+||++ +. +.+ +||.++.|++||+
T Consensus 82 ~-~~~~~g~~~~~I~~~a~~~-~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~ 130 (141)
T 1jmv_A 82 E-KLSGSGDLGQVLSDAIEQY-DVDLLVTGHH-QDFWSK--LMSSTRQVMNTIK 130 (141)
T ss_dssp C-EEEEEECHHHHHHHHHHHT-TCCEEEEEEC-CCCHHH--HHHHHHHHHTTCC
T ss_pred E-EEEecCCHHHHHHHHHHhc-CCCEEEEeCC-Cchhhh--hcchHHHHHhcCC
Confidence 1 11222232 3344444454 8999999999 65 555 3999999999986
No 38
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.46 E-value=8.4e-07 Score=75.29 Aligned_cols=109 Identities=13% Similarity=0.034 Sum_probs=70.8
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEe-cC---C------CCc-cCch---hhhcHHHHHHHHHhc--cC
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRID-LL---E------NSV-ESEN---DRCLDDAVTKEFMVG--NV 390 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~-~~---~------~~~-~~~~---~~~~~~~~l~e~~~~--~~ 390 (451)
++|++++-|++.++.|+++|.++|+..+++++++++. .+ . ... ..+. ..+..++.++++ .. ..
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 83 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLTG 83 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHHS
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhhc
Confidence 7999999999999999999999999999999999998 52 1 011 0111 112233444444 32 11
Q ss_pred CCCCeEEEEEEeCChHHHHHHHHhcC--CCcEEEEcccCCCCcchhhhhhHHHHhhcCc
Q 042567 391 GNTRVECHEMVANDSKQLMDAIKKEK--DFELVIVDFAEGHMMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 391 ~~~~v~y~e~~v~~g~~~~~~i~~~~--~~DLiivG~~~~~~~~~~~gs~~e~i~~~~~ 447 (451)
..+.+.+. +..|.....+++.++ ++|||+||++++ |.++.|++||+
T Consensus 84 ~~~~~~~~---~~~g~~~~~I~~~a~~~~~dliV~G~~g~--------sv~~~vl~~a~ 131 (138)
T 1q77_A 84 STEIPGVE---YRIGPLSEEVKKFVEGKGYELVVWACYPS--------AYLCKVIDGLN 131 (138)
T ss_dssp CCCCCCEE---EECSCHHHHHHHHHTTSCCSEEEECSCCG--------GGTHHHHHHSS
T ss_pred cCCcceEE---EEcCCHHHHHHHHHHhcCCCEEEEeCCCC--------chHHHHHHhCC
Confidence 11133221 223422233444443 899999999865 99999999987
No 39
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.41 E-value=3.4e-07 Score=86.96 Aligned_cols=118 Identities=11% Similarity=0.065 Sum_probs=77.2
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCc-------c---Cc----------hhhhcHHHHHHHHH
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSV-------E---SE----------NDRCLDDAVTKEFM 386 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~-------~---~~----------~~~~~~~~~l~e~~ 386 (451)
++|++++-|++.+..|+++|.++|+..+++++++++..+.... . .+ ..++..++.++++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR 80 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999997542100 0 00 01122234455444
Q ss_pred hccCCCCCeEEEEEEeCChHHHHHHHHhcC-CCcEEEEcccCC--CCcchhhhhhHHHHhhcCc
Q 042567 387 VGNVGNTRVECHEMVANDSKQLMDAIKKEK-DFELVIVDFAEG--HMMSLLVIQSVESIKQGAK 447 (451)
Q Consensus 387 ~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~-~~DLiivG~~~~--~~~~~~~gs~~e~i~~~~~ 447 (451)
..... ..+.+ +..+..|.....+++. + ++|||+||++++ .+.++++||.++.+++||.
T Consensus 81 ~~~~~-~g~~~-~~~~~~g~~~~~I~~~-~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~ 141 (268)
T 3ab8_A 81 QSALA-AGVAV-EAVLEEGVPHEAILRR-ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASP 141 (268)
T ss_dssp HHHHH-TTCCE-EEEEEEECHHHHHHHH-HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCS
T ss_pred HHHHh-CCCCe-EEEEecCCHHHHHHhh-ccCCCEEEEeccCCCccccccccchhHHHHHHhCC
Confidence 32110 11112 1122233222233444 5 899999999974 5888999999999999986
No 40
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.89 E-value=0.055 Score=51.29 Aligned_cols=221 Identities=11% Similarity=0.050 Sum_probs=132.9
Q ss_pred cceEEEEecCCCCHHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCCcccccccccccccccccHHHHHHHHHHHHhcCC
Q 042567 165 ELRILCCIHHEDNVNGIINLLRASNPTEMNPICAYAVHLIDLVGRALPVIVPYNTQKRRLVANSTDRIMRAMTRYSKGSG 244 (451)
Q Consensus 165 ~~rILv~v~~~~~~~~ll~la~~la~~~~~~~~v~~Lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 244 (451)
.-+|||++..|....+++.++..+...+ ..+++.++..-.++ ....++ ++++++|-+..
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt~~~---G~ltv~~i~p~~~~----------------~~l~~q-l~~l~~~l~~r- 78 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDITYPK---GSVKLLGLAGNTDK----------------ENLLSQ-LPSISEGFQEE- 78 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHTTT---CEEEEEECC---CT----------------TCHHHH-HHHHHHHHHHT-
T ss_pred CCcEEEecCCchhhhhHHHHHHHhccCc---eeEEEEEEccCCCc----------------cHHHHH-HHHHHHHHHhC-
Confidence 4589999999999999999999999653 56888888432110 110122 25556665432
Q ss_pred CceeEeeEEEEcCCCCchHhHHHHHHh-----CCCCEEEEeccCCCcccccchhhhHHHHHHhhcCCccEEEeecCCCCC
Q 042567 245 AAVKVQPFKMISPYNTMHQSICKLVED-----NLIPLVLLPFHENGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRGLTY 319 (451)
Q Consensus 245 ~~V~v~~~~~vs~~~~~~~~I~~~A~e-----~~~dLIvlg~h~~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~~~~ 319 (451)
++..- +++....++.+++....+. -+.+.|+|||..+- .....+..++... .++.-.|.++-+.....
T Consensus 79 -~v~a~--~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~---e~~~~y~~~i~~~-~~~~~nVlil~~~~~~~ 151 (294)
T 3g40_A 79 -GVFSS--WTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENR---DRDEEIREIIRKA-SMYRMGVLLFSKHPQAG 151 (294)
T ss_dssp -TCEEE--EEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSG---GGHHHHHHHHHHH-HHTTCEEEEEECCTTTT
T ss_pred -CceeE--EEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCCh---hhhHHHHHHHHHH-HHhCceEEEEecCCccC
Confidence 45433 3343447899999998876 56799999996411 1223566666554 55688888885433211
Q ss_pred CCCCCcceeEEEEe------c--CC--cchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhcc
Q 042567 320 YHPSNICYNVAVFF------L--GG--PDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGN 389 (451)
Q Consensus 320 ~~~~~~~~~I~v~f------~--Gg--~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~ 389 (451)
. ...++|=+=. - || .+-..++-+|-.+..+.++++.++.+++. +.+.+..+++++++....
T Consensus 152 f---g~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------e~a~~~a~~~l~~Lv~~~ 222 (294)
T 3g40_A 152 L---GRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------AIQAQAAENFLQSLAELA 222 (294)
T ss_dssp T---TTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS------HHHHHHHHHHHHHHHHHH
T ss_pred C---CCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC------HHHHHHHHHHHHHHHHHh
Confidence 1 1114553321 1 23 35577888888888888999999999763 234555566777666433
Q ss_pred CCCCCeEEEEEEeCChHHHHHHHHhcCCCcEEEEcccCC
Q 042567 390 VGNTRVECHEMVANDSKQLMDAIKKEKDFELVIVDFAEG 428 (451)
Q Consensus 390 ~~~~~v~y~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~ 428 (451)
+-....+ ++. + +-.+++++..++||+++|-...
T Consensus 223 -Ri~a~~~--vv~--~-~F~~il~~s~~ADL~flGl~~~ 255 (294)
T 3g40_A 223 -RIPNVKM--QVL--R-ENPIKSSKLPFASLHIFSLDPN 255 (294)
T ss_dssp -TCCSCEE--EEE--S-SCTTTSSSCCCCSEEEEECCSS
T ss_pred -cCCceEE--Eec--C-chHHHHhhCcCCCEEEEcCCCC
Confidence 1122222 222 2 1234666644899999998654
No 41
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=79.46 E-value=2.7 Score=40.66 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=40.7
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhcc
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGN 389 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~ 389 (451)
.++++.|.||.|+--.|.++.+.....+..+.++++.+...+. ...+|++++..+.
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~-------et~~~v~~~~~~~ 102 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQ-------EMYRFRDQMVEEM 102 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCH-------HHHHHHHHHHHTT
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCH-------HHHHHHHHHHHHc
Confidence 4789999999999999999998876556677889987654321 1345666665544
No 42
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=68.39 E-value=12 Score=29.23 Aligned_cols=54 Identities=7% Similarity=0.019 Sum_probs=40.6
Q ss_pred CchHhHHHHHHhCCCCEEEEeccC--CCcccccchhhhHHHHHHhhcCCccEEEeecC
Q 042567 260 TMHQSICKLVEDNLIPLVLLPFHE--NGEFQSRTACVQNFNKNVLSYAPCTVGIFVDR 315 (451)
Q Consensus 260 ~~~~~I~~~A~e~~~dLIvlg~h~--~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr 315 (451)
...+.|.+++++.+++.||+|.-. ||.........+.+.+++-++ +.|| .++|.
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEV-ELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEE-EEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCE-EEECC
Confidence 345788999999999999999876 776544444667788888777 8998 44554
No 43
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=66.75 E-value=14 Score=34.39 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=46.9
Q ss_pred CcchHHHHHHHHHHhcCCCe--EEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEEEEe---CChHHHHH
Q 042567 336 GPDDREAMALVSRISSHPGM--SITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHEMVA---NDSKQLMD 410 (451)
Q Consensus 336 g~ddreAl~~a~rma~~~~~--~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v---~~g~~~~~ 410 (451)
.|.|.+|++.|.++++..+. +++++.+-.+. .++.+++.... +.+++...+-.. .+...+..
T Consensus 36 np~d~~ale~A~~Lke~~g~~~~V~av~~G~~~-----------~~~~lr~ala~--GaD~vi~v~d~~~~~~~~~~~a~ 102 (264)
T 1o97_C 36 NEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR-----------VDESLRKCLAK--GADRAVRVWDDAAEGSDAIVVGR 102 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG-----------GHHHHHHHHHT--TCSEEEEECCGGGTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh-----------HHHHHHHHHhc--CCCEEEEEcCcccccCCHHHHHH
Confidence 78999999999999987666 89988875321 12233333222 234443322110 12233333
Q ss_pred HHHhcC---CCcEEEEcccCC
Q 042567 411 AIKKEK---DFELVIVDFAEG 428 (451)
Q Consensus 411 ~i~~~~---~~DLiivG~~~~ 428 (451)
++.++. ++|+|+.|.+..
T Consensus 103 ~La~~i~~~~~dlVl~G~~s~ 123 (264)
T 1o97_C 103 ILTEVIKKEAPDMVFAGVQSS 123 (264)
T ss_dssp HHHHHHHHHCCSEEEEESCCT
T ss_pred HHHHHHHhcCCCEEEEcCCcc
Confidence 443331 799999999874
No 44
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=65.75 E-value=27 Score=32.17 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=47.1
Q ss_pred CcchHHHHHHHHHHhcCCCe--EEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEE-EE----eCChHHH
Q 042567 336 GPDDREAMALVSRISSHPGM--SITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHE-MV----ANDSKQL 408 (451)
Q Consensus 336 g~ddreAl~~a~rma~~~~~--~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e-~~----v~~g~~~ 408 (451)
.|.|.+|++.|.++++. +. +++++.+-.+. .++.+++..... .+++...+ -. -.+...+
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------a~~~lr~ala~G--aD~vi~v~~d~~~~~~~~~~~~ 101 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ-----------AAETLRTALAMG--ADRAILVVAADDVQQDIEPLAV 101 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG-----------GHHHHHHHHHHT--CSEEEEEECCSSTTCCCCHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------HHHHHHHHHhcC--CCEEEEEecChhhcccCCHHHH
Confidence 78999999999999987 66 89998876421 112233332222 34443333 11 1123334
Q ss_pred HHHHHhcC---CCcEEEEcccCC
Q 042567 409 MDAIKKEK---DFELVIVDFAEG 428 (451)
Q Consensus 409 ~~~i~~~~---~~DLiivG~~~~ 428 (451)
...+.++. +||||+.|.+..
T Consensus 102 a~~La~~i~~~~~dlVl~G~~s~ 124 (252)
T 1efp_B 102 AKILAAVARAEGTELIIAGKQAI 124 (252)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCT
T ss_pred HHHHHHHHHhcCCCEEEEcCCcc
Confidence 44444331 799999999874
No 45
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=63.69 E-value=27 Score=32.31 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=47.1
Q ss_pred CcchHHHHHHHHHHhcCCCe--EEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEE-EE----eCChHHH
Q 042567 336 GPDDREAMALVSRISSHPGM--SITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHE-MV----ANDSKQL 408 (451)
Q Consensus 336 g~ddreAl~~a~rma~~~~~--~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e-~~----v~~g~~~ 408 (451)
.|.|.+|++.|.|+.+. +. +++++.+-.+. .++.+++..... .+++...+ -. --+...+
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------a~~~lr~ala~G--aD~vi~v~~d~~~~~~~~~~~~ 104 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ-----------CQETIRTALAMG--ADRGIHVEVPPAEAERLGPLQV 104 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT-----------HHHHHHHHHHHT--CSEEEEEECCHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------HHHHHHHHHhcC--CCEEEEEecChhhcccCCHHHH
Confidence 78999999999999987 66 89998886421 122333332222 34443332 10 1123333
Q ss_pred HHHHHhcC---CCcEEEEcccCC
Q 042567 409 MDAIKKEK---DFELVIVDFAEG 428 (451)
Q Consensus 409 ~~~i~~~~---~~DLiivG~~~~ 428 (451)
..++.++. +||+|+.|.+..
T Consensus 105 A~~La~~i~~~~~dlVl~G~~s~ 127 (255)
T 1efv_B 105 ARVLAKLAEKEKVDLVLLGKQAI 127 (255)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCT
T ss_pred HHHHHHHHHhcCCCEEEEeCccc
Confidence 34444331 799999999874
No 46
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=62.07 E-value=8.7 Score=36.69 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=34.5
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeE-EEEEEEecC
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMS-ITIFRIDLL 365 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~-ltvv~v~~~ 365 (451)
.++++.+.||.|+--.+.++.++.+..+.+ ++++++...
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g 64 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHM 64 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECC
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECC
Confidence 689999999999999999999988777888 999999754
No 47
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=59.02 E-value=13 Score=37.28 Aligned_cols=95 Identities=9% Similarity=0.075 Sum_probs=57.7
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcC-CCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEEEEe-CC
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSH-PGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHEMVA-ND 404 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~-~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v-~~ 404 (451)
.+|+|.+.||.|+--.+.++.++.+. .+.+++++++...-.. +.+.+.++++++...... .....+..+ ..
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~-----~s~~~~~~v~~~~~~lgi--~~~v~~~~~~~~ 86 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA-----NADAWVTHCENVCQQWQV--PLVVERVQLAQE 86 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCS-----SHHHHHHHHHHHHHHTTC--CEEEECCCCCCS
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCc-----ccHHHHHHHHHHHHHcCC--cEEEEEecCCCC
Confidence 58999999999999999999998877 8999999999743221 122234555555544311 111111111 11
Q ss_pred h---HHH-----HHHHHhcC-CCcEEEEcccCC
Q 042567 405 S---KQL-----MDAIKKEK-DFELVIVDFAEG 428 (451)
Q Consensus 405 g---~~~-----~~~i~~~~-~~DLiivG~~~~ 428 (451)
| .+. -.++.+.. ++|.|+.|-|.+
T Consensus 87 ~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~d 119 (433)
T 1ni5_A 87 GLGIEAQARQARYQAFARTLLPGEVLVTAQHLD 119 (433)
T ss_dssp SSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhCCeEEeeccch
Confidence 1 111 12333444 689999988753
No 48
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=57.68 E-value=64 Score=30.86 Aligned_cols=106 Identities=11% Similarity=0.131 Sum_probs=54.4
Q ss_pred hhhhhHHHhhhccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHh--hhh-HHHHHHHH
Q 042567 27 NFFLPFLFIRIGLLTDIFSIKD-WKAFVSLGMILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCFL--NIK-GIIELLVF 102 (451)
Q Consensus 27 ~~fiPlFF~~~Gl~~d~~~l~~-~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~m--~~~-G~~~li~~ 102 (451)
...+++-+...|+++++..+.. ...|......++.-++..=+.++..+++++.+. .+..|+++ ++- |....+..
T Consensus 46 ~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~--~~~~Glil~~~~P~~~~s~v~t 123 (332)
T 3zux_A 46 PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPA--EIAVGVILVGCCPGGTASNVMT 123 (332)
T ss_dssp HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHHSCCCTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--HHHHHHHHHhcCCchhHHHHHH
Confidence 4577888889999999988762 223443333344444445455666677776554 44444443 333 33333322
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHhHHHHHHHhc
Q 042567 103 LRWIIYKPIDVQTFSTLVLFNLVLTAIVTPLISIFY 138 (451)
Q Consensus 103 ~~~~~~g~i~~~~~~~~v~~~~vtt~i~~pl~~~~~ 138 (451)
. ...| |.+.-..++....+.+.++.|++-+++
T Consensus 124 ~--~a~G--d~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 124 Y--LARG--NVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp H--HTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222 333333333333333445556555544
No 49
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=56.72 E-value=90 Score=29.79 Aligned_cols=50 Identities=4% Similarity=-0.146 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH-hhhhHHHHHHHHHHHH
Q 042567 57 MILVAAYLGKVWGSLLSLIWFKTSTRNDLLFGCF-LNIKGIIELLVFLRWI 106 (451)
Q Consensus 57 ~~~~~~~~~K~~~~~~~~~~~~~~~~~s~~~g~~-m~~~G~~~li~~~~~~ 106 (451)
..+++..+.-+..+++.+|.+|++.+|+.++++- =+.+....+.++..-+
T Consensus 232 ~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F 282 (332)
T 3zux_A 232 AVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHF 282 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHc
Confidence 3344445566777888999999999999998883 3444556666665544
No 50
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=56.15 E-value=9.5 Score=38.64 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=43.9
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhcc
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGN 389 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~ 389 (451)
.+++|.+.||.|+--.+.++.++.+..+.++.++++...-.. .+.+.+.++++++....
T Consensus 19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg----~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG----RESEEEMEFVKRFCVER 77 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT----HHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc----cccHHHHHHHHHHHHHc
Confidence 689999999999999999999998888999999999753210 11233455666665544
No 51
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=52.08 E-value=20 Score=34.07 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=52.7
Q ss_pred eeEEEEecCCcchHHHHHHHHHHh-c-----------------CCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhc
Q 042567 327 YNVAVFFLGGPDDREAMALVSRIS-S-----------------HPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVG 388 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma-~-----------------~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~ 388 (451)
.++++.|.||.|+--.|.++.+.. + .++.++.++++.+...+. ...+|++++..+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fp-------et~~fv~~~~~~ 126 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFP-------TLENFVLETSER 126 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCH-------HHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCH-------HHHHHHHHHHHH
Confidence 479999999999999999887753 1 135678889887654322 234566666554
Q ss_pred cCCCCCeEE-EEEEeCChH--HHHHHHHhcCCCcEEEEcccCCC
Q 042567 389 NVGNTRVEC-HEMVANDSK--QLMDAIKKEKDFELVIVDFAEGH 429 (451)
Q Consensus 389 ~~~~~~v~y-~e~~v~~g~--~~~~~i~~~~~~DLiivG~~~~~ 429 (451)
... ..+.+ .+.....+. ...+.++.....+.+++|.+..-
T Consensus 127 ygl-~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 127 YCL-SLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp TTE-EEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred cCC-CEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 410 00000 000001111 11222322226889999998753
No 52
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=47.36 E-value=38 Score=28.13 Aligned_cols=57 Identities=16% Similarity=0.125 Sum_probs=41.2
Q ss_pred CchHhHHHHHHhCCCCEEEEeccC--CCcccccchhhhHHHHHHhhcCCccEEEeecCC
Q 042567 260 TMHQSICKLVEDNLIPLVLLPFHE--NGEFQSRTACVQNFNKNVLSYAPCTVGIFVDRG 316 (451)
Q Consensus 260 ~~~~~I~~~A~e~~~dLIvlg~h~--~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr~ 316 (451)
...+.|.+++++.+++.||+|.-. ||.........+.+.+++-++.+.||-..=+|.
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERl 98 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERL 98 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 346889999999999999999876 776543333556777777666689985543444
No 53
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=42.64 E-value=77 Score=30.09 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=51.2
Q ss_pred eeEEEEecCCcchHHHHHHHHHHh-c-----------------CCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhc
Q 042567 327 YNVAVFFLGGPDDREAMALVSRIS-S-----------------HPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVG 388 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma-~-----------------~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~ 388 (451)
.++++.|.||.|+--.|.++.+.. + .+...+.|+++.+...|.++ .+|++++..+
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET-------~ef~d~~~~~ 131 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTL-------ENFIEETSLR 131 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHH-------HHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHH-------HHHHHHHHHH
Confidence 368999999999999999987742 1 12357888998776554432 3566666554
Q ss_pred cCCCCCeEEEEEEeCC---hHHHHHHHHhcC-CCcEEEEcccCC
Q 042567 389 NVGNTRVECHEMVAND---SKQLMDAIKKEK-DFELVIVDFAEG 428 (451)
Q Consensus 389 ~~~~~~v~y~e~~v~~---g~~~~~~i~~~~-~~DLiivG~~~~ 428 (451)
+ +-++ .....+. -.+...-+.+.. .+|.++.|.++.
T Consensus 132 y--gL~L--~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 132 Y--SLSL--YESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp T--TEEE--EECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred h--CCcE--EEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 4 1111 1111110 111222333444 699999999875
No 54
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=41.56 E-value=32 Score=30.42 Aligned_cols=52 Identities=13% Similarity=-0.085 Sum_probs=36.6
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhcc
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGN 389 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~ 389 (451)
.+|+|.|.||.|+--.+.++.+.. -++.++++.+.-.+ ....++++++..+.
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~~-------~e~~~~v~~~~~~~ 96 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLF-------PETYRFIDELTDKL 96 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCBC-------HHHHHHHHHHHHHT
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCCC-------HHHHHHHHHHHHHh
Confidence 489999999999999999988874 24678888764321 12245666666544
No 55
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=40.90 E-value=26 Score=32.26 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=38.8
Q ss_pred eEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHHhcc
Q 042567 328 NVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFMVGN 389 (451)
Q Consensus 328 ~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~ 389 (451)
++++.|.||+|+--.|.++.++... +..+.++++.+...+. ...+|++++..+.
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~~~-------et~~~v~~~~~~~ 96 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHHFP-------QTLTLKNEIEKKY 96 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCBCH-------HHHHHHHHHHHHH
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCCCH-------HHHHHHHHHHHHh
Confidence 6899999999999999999988765 5667888887654322 1234555555443
No 56
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=40.36 E-value=79 Score=28.10 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCcEEEEcccCCCCcchhhhhhHHHHhh-cCccCC
Q 042567 407 QLMDAIKKEKDFELVIVDFAEGHMMSLLVIQSVESIKQ-GAKLLP 450 (451)
Q Consensus 407 ~~~~~i~~~~~~DLiivG~~~~~~~~~~~gs~~e~i~~-~~~~~~ 450 (451)
+..+.+++. +.|++++-.-.+.+..-|+-.-.-.+.| |..+||
T Consensus 73 ~~~~~l~~~-~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSLLP 116 (212)
T 3av3_A 73 EILRELKGR-QIDWIALAGYMRLIGPTLLSAYEGKIVNIHPSLLP 116 (212)
T ss_dssp HHHHHHHHT-TCCEEEESSCCSCCCHHHHHHTTTCEEEEESSCTT
T ss_pred HHHHHHHhc-CCCEEEEchhhhhCCHHHHhhhcCCEEEEecCcCC
Confidence 556777777 8999999876665444443322222333 556665
No 57
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=36.01 E-value=59 Score=27.29 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=40.2
Q ss_pred CCchHhHHHHHHhCCCCEEEEeccC--CCcccccchhhhHHHHHHhhcCCccEEEeecC
Q 042567 259 NTMHQSICKLVEDNLIPLVLLPFHE--NGEFQSRTACVQNFNKNVLSYAPCTVGIFVDR 315 (451)
Q Consensus 259 ~~~~~~I~~~A~e~~~dLIvlg~h~--~G~~e~~~~~~gs~~~~Vl~~apc~V~Ilvdr 315 (451)
....+.|.+++++.+++.|++|.-. +|.........+.+..++.++.++||.. +|.
T Consensus 41 ~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~-vDE 98 (150)
T 1vhx_A 41 DYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVL-WDE 98 (150)
T ss_dssp BCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEE-ECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEE-ecC
Confidence 5678999999999999999999654 6654222223466777777777899855 544
No 58
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=33.58 E-value=1e+02 Score=26.92 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=28.7
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
+++++.+.||.|+--++.++.+ .+.++..+++...
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~ 41 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFG 41 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECS
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCC
Confidence 5899999999999888877654 4678888998754
No 59
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=31.65 E-value=46 Score=31.45 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=46.6
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCC-eEEEEEEEecCCCCccCchhhhcHHHHHHHHHhccCCCCCeEEEEEEeCCh
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPG-MSITIFRIDLLENSVESENDRCLDDAVTKEFMVGNVGNTRVECHEMVANDS 405 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~-~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~v~y~e~~v~~g 405 (451)
+||++. ||-| -..++.+.+++. .+++++-+.. .--+..++++.+.....-.+.++ +..++||
T Consensus 85 k~VLIi--GgGd----G~~~revlk~~~v~~v~~VEID~--------~Vv~~a~~~lp~~~~~~~~dpRv---~v~~~Dg 147 (294)
T 3o4f_A 85 KHVLII--GGGD----GAMLREVTRHKNVESITMVEIDA--------GVVSFCRQYLPNHNAGSYDDPRF---KLVIDDG 147 (294)
T ss_dssp CEEEEE--SCTT----SHHHHHHHTCTTCCEEEEEESCH--------HHHHHHHHHCHHHHTTGGGCTTE---EEEESCT
T ss_pred CeEEEE--CCCc----hHHHHHHHHcCCcceEEEEcCCH--------HHHHHHHhcCccccccccCCCcE---EEEechH
Confidence 576554 3333 234556666765 5788877632 12233445554443221123453 5678898
Q ss_pred HHHHHHHHhcC-CCcEEEEcccC
Q 042567 406 KQLMDAIKKEK-DFELVIVDFAE 427 (451)
Q Consensus 406 ~~~~~~i~~~~-~~DLiivG~~~ 427 (451)
. +++++.. .||+|++-...
T Consensus 148 ~---~~l~~~~~~yDvIi~D~~d 167 (294)
T 3o4f_A 148 V---NFVNQTSQTFDVIISDCTD 167 (294)
T ss_dssp T---TTTSCSSCCEEEEEESCCC
T ss_pred H---HHHhhccccCCEEEEeCCC
Confidence 7 4677666 89999998764
No 60
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=30.66 E-value=55 Score=29.26 Aligned_cols=29 Identities=3% Similarity=-0.046 Sum_probs=24.9
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEEEEec
Q 042567 336 GPDDREAMALVSRISSHPGMSITIFRIDL 364 (451)
Q Consensus 336 g~ddreAl~~a~rma~~~~~~ltvv~v~~ 364 (451)
.+.+.|++..|++|++..+.+++++-+-.
T Consensus 18 ~~~s~ell~~A~~La~~~g~~v~av~~G~ 46 (217)
T 3ih5_A 18 ADVSLELLTKGRSLANELNCQLEAVVAGT 46 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCEEEEEEES
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence 46789999999999998888899888754
No 61
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.17 E-value=1.3e+02 Score=27.84 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=33.5
Q ss_pred eeEEEEecCCc---chHHHHHHHHHHhcCCCeEEEEEEEecCCCCccCchhhhcHHHHHHHHH
Q 042567 327 YNVAVFFLGGP---DDREAMALVSRISSHPGMSITIFRIDLLENSVESENDRCLDDAVTKEFM 386 (451)
Q Consensus 327 ~~I~v~f~Gg~---ddreAl~~a~rma~~~~~~ltvv~v~~~~~~~~~~~~~~~~~~~l~e~~ 386 (451)
+|| +.|.||+ |+.+...+|+++.++ ++.|++|-|-..+ +..+..+.|.+...
T Consensus 108 ~rI-Ilf~ds~~~~~~~~l~~lak~lkk~-gI~v~vIgFG~~~------~n~~kLe~l~~~~N 162 (268)
T 4b4t_W 108 QRI-VAFVCSPISDSRDELIRLAKTLKKN-NVAVDIINFGEIE------QNTELLDEFIAAVN 162 (268)
T ss_dssp EEE-EEEECSCCSSCHHHHHHHHHHHHHH-TEEEEEEEESSCC------SSCCHHHHHHHHHC
T ss_pred eEE-EEEECCCCCCCHHHHHHHHHHHHHc-CCEEEEEEeCCCc------cchHHHHHHHHHhc
Confidence 454 5555555 556777777777776 9999999996432 22345566666553
No 62
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=27.58 E-value=2.3e+02 Score=22.35 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=24.4
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRI 362 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v 362 (451)
.+|++.|. .|-|.|.-..|=.+..|+++.+++-
T Consensus 2 sqifvvfs---sdpeilkeivreikrqgvrvvllys 34 (162)
T 2l82_A 2 SQIFVVFS---SDPEILKEIVREIKRQGVRVVLLYS 34 (162)
T ss_dssp CEEEEEEE---SCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ceEEEEec---CCHHHHHHHHHHHHhCCeEEEEEec
Confidence 36888887 3556677666666778999999883
No 63
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=26.29 E-value=71 Score=26.99 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=29.8
Q ss_pred eEEEEcCCCCchHhHHHHHHhCCCCEEEEeccC
Q 042567 251 PFKMISPYNTMHQSICKLVEDNLIPLVLLPFHE 283 (451)
Q Consensus 251 ~~~~vs~~~~~~~~I~~~A~e~~~dLIvlg~h~ 283 (451)
-...+-|..+++..|.++|++.++|+||-|..+
T Consensus 92 LIYsirPP~El~~~i~~lA~~v~adliI~pL~~ 124 (153)
T 2k4m_A 92 LIYSIRPPAEIHSSLMRVADAVGARLIIKPLTG 124 (153)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHTCEEEEECBTT
T ss_pred EEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 345788999999999999999999999999976
No 64
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=23.07 E-value=2.3e+02 Score=25.16 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCcEEEEcccCCCCcchhhhhhHHHHhh-cCccCC
Q 042567 406 KQLMDAIKKEKDFELVIVDFAEGHMMSLLVIQSVESIKQ-GAKLLP 450 (451)
Q Consensus 406 ~~~~~~i~~~~~~DLiivG~~~~~~~~~~~gs~~e~i~~-~~~~~~ 450 (451)
.++.+.+++. +.||+++-.-.+.+..-|+-.-.-.++| |..+||
T Consensus 72 ~~~~~~L~~~-~~Dlivlagy~~IL~~~~l~~~~~~~iNiHpSLLP 116 (215)
T 3kcq_A 72 EHISTVLREH-DVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLP 116 (215)
T ss_dssp HHHHHHHHHT-TCSEEEESSCCSCCCHHHHHHTTTSEEEEESSCTT
T ss_pred HHHHHHHHHh-CCCEEEEeCCceEeCHHHHhhccCCeEEECccccc
Confidence 5667788888 8999999887766544444322222333 555555
No 65
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=21.22 E-value=1.5e+02 Score=25.55 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=27.9
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
+++++.+.||.|+--++.++.+. +.+++.+++...
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~ 38 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYN 38 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCC
Confidence 57899999999999888887764 357788888754
No 66
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=20.91 E-value=2e+02 Score=28.26 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=30.2
Q ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEecC
Q 042567 327 YNVAVFFLGGPDDREAMALVSRISSHPGMSITIFRIDLL 365 (451)
Q Consensus 327 ~~I~v~f~Gg~ddreAl~~a~rma~~~~~~ltvv~v~~~ 365 (451)
.++++.+.||.|+--++.++.+. |.++..+++..+
T Consensus 188 ~kvlvalSGGvDS~vll~ll~~~----G~~v~av~v~~~ 222 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLTMKR----GVSVEAVHFHSP 222 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHB----TEEEEEEEEECT
T ss_pred CeEEEEeCCCChHHHHHHHHHHc----CCcEEEEEEeCC
Confidence 78999999999999999888763 789999999753
Done!