Query 042568
Match_columns 983
No_of_seqs 913 out of 6541
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 12:42:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.5E-76 5.1E-81 733.7 39.1 550 30-599 8-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-59 5.4E-64 581.3 31.6 468 78-563 201-743 (768)
3 4eco_A Uncharacterized protein 100.0 3.8E-58 1.3E-62 555.9 26.6 487 30-565 26-604 (636)
4 3t6q_A CD180 antigen; protein- 100.0 6.1E-56 2.1E-60 537.0 37.4 509 67-586 14-562 (606)
5 4ecn_A Leucine-rich repeat pro 100.0 1.1E-56 3.8E-61 550.4 30.3 492 29-560 264-863 (876)
6 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-54 8.8E-59 530.0 37.6 508 65-587 4-625 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-54 5.3E-59 524.7 33.5 502 63-588 5-562 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 8.8E-54 3E-58 535.4 38.5 502 65-585 14-561 (844)
9 3t6q_A CD180 antigen; protein- 100.0 3.1E-52 1.1E-56 504.5 32.9 473 77-566 57-565 (606)
10 1ziw_A TOLL-like receptor 3; i 100.0 4.9E-51 1.7E-55 500.8 41.3 489 80-581 7-594 (680)
11 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-51 1.3E-55 495.0 30.1 474 77-566 56-563 (606)
12 2z81_A CD282 antigen, TOLL-lik 100.0 2.9E-51 9.8E-56 490.0 26.4 481 64-566 3-515 (549)
13 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-49 8E-54 495.4 38.5 463 77-566 48-565 (844)
14 2z63_A TOLL-like receptor 4, v 100.0 1.1E-49 3.8E-54 478.7 32.1 475 77-568 28-538 (570)
15 3omv_A RAF proto-oncogene seri 100.0 1E-50 3.5E-55 438.4 19.0 263 667-969 36-302 (307)
16 4gt4_A Tyrosine-protein kinase 100.0 6.7E-51 2.3E-55 442.2 17.2 258 669-965 28-304 (308)
17 4asz_A BDNF/NT-3 growth factor 100.0 7.2E-51 2.5E-55 440.0 16.1 264 667-970 13-292 (299)
18 4aoj_A High affinity nerve gro 100.0 2.6E-50 9E-55 441.8 19.3 262 668-969 42-321 (329)
19 2z63_A TOLL-like receptor 4, v 100.0 1.9E-48 6.6E-53 467.9 33.3 481 82-588 12-535 (570)
20 4b9d_A Serine/threonine-protei 100.0 8.5E-50 2.9E-54 437.0 16.6 252 667-961 24-277 (350)
21 4fih_A Serine/threonine-protei 100.0 3.3E-49 1.1E-53 431.7 20.0 250 667-961 74-324 (346)
22 4eco_A Uncharacterized protein 100.0 2.9E-49 9.9E-54 478.1 16.7 456 101-588 81-604 (636)
23 4g3f_A NF-kappa-beta-inducing 100.0 8.2E-49 2.8E-53 427.4 18.5 259 667-969 58-318 (336)
24 3hmm_A TGF-beta receptor type- 100.0 5.8E-49 2E-53 428.5 15.7 278 668-968 4-298 (303)
25 4ase_A Vascular endothelial gr 100.0 8.2E-49 2.8E-53 433.3 16.7 266 666-969 63-349 (353)
26 4aw0_A HPDK1, 3-phosphoinositi 100.0 4.6E-49 1.6E-53 424.0 13.6 250 667-960 32-284 (311)
27 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-48 8.6E-53 464.6 21.3 485 71-586 3-512 (549)
28 3fpq_A Serine/threonine-protei 100.0 3.3E-48 1.1E-52 415.7 19.3 248 670-961 29-283 (290)
29 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-47 3.7E-52 455.6 25.7 454 81-586 4-483 (520)
30 4fie_A Serine/threonine-protei 100.0 4.8E-48 1.7E-52 432.9 21.2 250 667-961 151-401 (423)
31 3hyh_A Carbon catabolite-derep 100.0 6.4E-48 2.2E-52 409.7 18.8 249 667-963 13-265 (275)
32 4ecn_A Leucine-rich repeat pro 100.0 3.9E-47 1.3E-51 466.0 27.8 445 101-565 323-844 (876)
33 2z7x_B TOLL-like receptor 1, v 100.0 6.9E-48 2.4E-52 457.3 19.9 443 77-564 21-484 (520)
34 3ubd_A Ribosomal protein S6 ki 100.0 7E-48 2.4E-52 415.1 11.4 249 667-961 24-282 (304)
35 4g31_A Eukaryotic translation 100.0 4.9E-47 1.7E-51 410.9 16.1 262 668-961 6-280 (299)
36 4g8a_A TOLL-like receptor 4; l 100.0 4.9E-44 1.7E-48 435.5 34.3 521 51-586 10-582 (635)
37 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-44 5.6E-49 432.0 23.7 455 80-566 34-515 (562)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.5E-44 2.2E-48 426.8 26.4 453 102-586 32-512 (562)
39 4b99_A Mitogen-activated prote 100.0 1.3E-44 4.3E-49 407.1 17.4 276 667-961 54-345 (398)
40 4f9c_A Cell division cycle 7-r 100.0 4.6E-44 1.6E-48 398.4 17.6 284 664-961 18-353 (361)
41 1jl5_A Outer protein YOPM; leu 100.0 7.7E-43 2.6E-47 403.4 20.6 394 97-586 7-431 (454)
42 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-42 6.2E-47 381.2 21.4 293 30-414 2-302 (313)
43 3uim_A Brassinosteroid insensi 100.0 1.5E-42 5.2E-47 385.3 20.1 295 652-968 15-312 (326)
44 2qkw_B Protein kinase; three-h 100.0 1.3E-41 4.4E-46 376.8 23.9 288 656-969 28-317 (321)
45 3v47_A TOLL-like receptor 5B a 100.0 1.2E-41 4.2E-46 396.6 24.7 374 101-517 30-412 (455)
46 3v5w_A G-protein coupled recep 100.0 2.3E-42 7.9E-47 403.4 17.6 250 667-961 189-450 (689)
47 3v47_A TOLL-like receptor 5B a 100.0 2.1E-41 7.1E-46 394.7 24.6 390 104-568 13-415 (455)
48 1jl5_A Outer protein YOPM; leu 100.0 2E-41 6.9E-46 391.5 23.5 406 77-566 11-434 (454)
49 3uto_A Twitchin; kinase, muscl 100.0 5.7E-42 2E-46 405.0 19.1 252 667-961 157-411 (573)
50 4g8a_A TOLL-like receptor 4; l 100.0 1E-39 3.4E-44 397.5 30.8 490 67-586 24-557 (635)
51 3soc_A Activin receptor type-2 100.0 6.4E-41 2.2E-45 371.1 16.9 278 666-969 23-320 (322)
52 2psq_A Fibroblast growth facto 100.0 1.7E-40 5.8E-45 374.4 20.3 266 667-971 81-368 (370)
53 2nru_A Interleukin-1 receptor- 100.0 6.9E-40 2.4E-44 360.6 24.5 287 653-967 11-306 (307)
54 3p86_A Serine/threonine-protei 100.0 1.9E-40 6.6E-45 364.5 19.3 270 666-975 36-306 (309)
55 3fxz_A Serine/threonine-protei 100.0 4.6E-40 1.6E-44 359.6 21.3 252 666-962 19-271 (297)
56 3kul_A Ephrin type-A receptor 100.0 4E-40 1.4E-44 364.9 20.1 264 667-971 49-317 (325)
57 3zgw_A Maternal embryonic leuc 100.0 1.8E-40 6.1E-45 369.2 16.6 255 666-965 9-265 (347)
58 3tki_A Serine/threonine-protei 100.0 3.1E-40 1.1E-44 365.3 17.9 256 667-963 7-264 (323)
59 2c30_A Serine/threonine-protei 100.0 1.4E-39 4.8E-44 359.9 23.1 265 654-963 22-297 (321)
60 3fe3_A MAP/microtubule affinit 100.0 4.6E-40 1.6E-44 363.9 18.7 250 666-962 14-266 (328)
61 3cbl_A C-FES, proto-oncogene t 100.0 2.1E-40 7.2E-45 375.0 15.4 261 667-969 114-376 (377)
62 3bz5_A Internalin-J, INLJ; leu 100.0 4.1E-39 1.4E-43 372.5 26.0 363 89-566 30-392 (457)
63 3s95_A LIMK-1, LIM domain kina 100.0 1.3E-39 4.5E-44 358.8 20.9 274 667-970 10-285 (310)
64 4hcu_A Tyrosine-protein kinase 100.0 1E-39 3.5E-44 351.8 19.3 257 667-968 10-267 (269)
65 2qol_A Ephrin receptor; recept 100.0 4.7E-40 1.6E-44 371.0 16.1 262 667-969 45-311 (373)
66 3vhe_A Vascular endothelial gr 100.0 6.3E-40 2.2E-44 369.5 17.1 273 659-969 14-357 (359)
67 4eqm_A Protein kinase; transfe 100.0 3.4E-40 1.2E-44 360.2 14.4 271 666-976 10-284 (294)
68 3sxs_A Cytoplasmic tyrosine-pr 100.0 1.7E-39 5.8E-44 350.0 19.2 259 666-969 7-266 (268)
69 3q4u_A Activin receptor type-1 100.0 2.9E-39 1E-43 354.5 21.2 263 666-965 7-300 (301)
70 3tt0_A Basic fibroblast growth 100.0 3.7E-39 1.3E-43 365.7 22.4 268 667-973 69-358 (382)
71 4euu_A Serine/threonine-protei 100.0 5.7E-39 2E-43 355.2 22.8 281 667-966 9-308 (319)
72 3l9p_A Anaplastic lymphoma kin 100.0 7.6E-40 2.6E-44 368.9 16.0 263 667-968 71-346 (367)
73 3lb7_A RAF proto-oncogene seri 100.0 1.6E-39 5.5E-44 357.0 18.2 264 666-970 35-303 (307)
74 2yab_A Death-associated protei 100.0 2.1E-39 7.2E-44 362.9 18.2 253 666-961 11-273 (361)
75 3gen_A Tyrosine-protein kinase 100.0 5.1E-39 1.7E-43 349.3 20.3 258 666-968 23-281 (283)
76 1o6l_A RAC-beta serine/threoni 100.0 3.4E-39 1.2E-43 357.9 19.3 249 667-961 5-261 (337)
77 3niz_A Rhodanese family protei 100.0 3.1E-39 1.1E-43 355.5 18.8 275 666-961 20-301 (311)
78 1luf_A Muscle-specific tyrosin 100.0 2.5E-39 8.4E-44 362.2 18.3 268 665-971 45-339 (343)
79 3ugc_A Tyrosine-protein kinase 100.0 1.2E-39 4.1E-44 356.4 14.9 273 667-969 10-293 (295)
80 3c0i_A Peripheral plasma membr 100.0 3E-39 1E-43 361.8 18.0 257 667-962 24-288 (351)
81 1o6v_A Internalin A; bacterial 100.0 6.8E-38 2.3E-42 365.4 30.0 346 99-514 44-389 (466)
82 1tki_A Titin; serine kinase, m 100.0 3.1E-39 1.1E-43 356.8 17.6 254 666-963 4-260 (321)
83 2ivs_A Proto-oncogene tyrosine 100.0 3.5E-39 1.2E-43 356.2 18.0 264 666-968 22-312 (314)
84 1rjb_A FL cytokine receptor; k 100.0 7.6E-39 2.6E-43 358.4 19.8 267 666-970 44-337 (344)
85 3poz_A Epidermal growth factor 100.0 3.4E-39 1.2E-43 358.1 16.5 258 667-967 15-278 (327)
86 2zv2_A Calcium/calmodulin-depe 100.0 1.8E-38 6E-43 347.7 22.0 250 667-961 13-293 (298)
87 1t46_A HOMO sapiens V-KIT hard 100.0 1.1E-38 3.7E-43 352.1 20.5 265 667-969 23-309 (313)
88 3dtc_A Mitogen-activated prote 100.0 7.2E-39 2.5E-43 345.7 18.6 254 667-965 7-271 (271)
89 3qd2_B Eukaryotic translation 100.0 6.4E-39 2.2E-43 357.1 18.3 264 666-961 5-326 (332)
90 3mdy_A Bone morphogenetic prot 100.0 1.6E-38 5.6E-43 354.6 21.6 280 657-970 27-334 (337)
91 3soa_A Calcium/calmodulin-depe 100.0 9.9E-39 3.4E-43 366.9 20.3 255 665-961 9-268 (444)
92 2izr_A Casein kinase I isoform 100.0 5.1E-39 1.7E-43 357.4 17.3 269 666-969 8-283 (330)
93 3op5_A Serine/threonine-protei 100.0 4.7E-39 1.6E-43 362.6 17.1 279 665-971 33-333 (364)
94 2y0a_A Death-associated protei 100.0 5.6E-39 1.9E-43 355.9 17.1 252 667-961 11-272 (326)
95 2bdw_A Hypothetical protein K1 100.0 9.9E-39 3.4E-43 358.6 19.1 255 665-962 27-286 (362)
96 4e5w_A Tyrosine-protein kinase 100.0 5.7E-39 2E-43 352.4 16.8 272 667-967 21-302 (302)
97 1csn_A Casein kinase-1; phosph 100.0 1.5E-38 5E-43 348.4 19.9 272 666-971 9-287 (298)
98 2pvf_A Fibroblast growth facto 100.0 1.9E-38 6.6E-43 353.3 21.1 269 666-973 34-324 (334)
99 3lxp_A Non-receptor tyrosine-p 100.0 7.8E-39 2.7E-43 353.8 16.9 274 669-972 33-315 (318)
100 3kex_A Receptor tyrosine-prote 100.0 6.7E-39 2.3E-43 355.5 16.4 258 667-967 13-276 (325)
101 1opk_A P150, C-ABL, proto-onco 100.0 4.3E-39 1.5E-43 376.8 15.4 265 667-975 220-486 (495)
102 3txo_A PKC-L, NPKC-ETA, protei 100.0 3.5E-39 1.2E-43 360.2 14.0 250 666-961 22-281 (353)
103 4eut_A Serine/threonine-protei 100.0 1.9E-38 6.6E-43 361.4 20.1 270 667-968 9-310 (396)
104 3h4j_B AMPK kdaid, SNF1-like p 100.0 7.2E-39 2.4E-43 354.9 15.9 249 667-963 9-261 (336)
105 1qcf_A Haematopoetic cell kina 100.0 5.7E-39 1.9E-43 372.4 15.8 259 666-969 187-446 (454)
106 2eva_A TAK1 kinase - TAB1 chim 100.0 7.8E-39 2.7E-43 351.8 16.1 259 667-971 8-267 (307)
107 1k9a_A Carboxyl-terminal SRC k 100.0 1.7E-38 5.7E-43 367.7 19.7 253 667-969 193-447 (450)
108 1u59_A Tyrosine-protein kinase 100.0 3E-38 1E-42 343.8 20.5 264 668-973 10-278 (287)
109 3t9t_A Tyrosine-protein kinase 100.0 2E-38 6.9E-43 341.3 18.9 257 667-968 8-265 (267)
110 1fot_A TPK1 delta, CAMP-depend 100.0 1.5E-38 5.2E-43 350.1 18.3 246 667-961 6-259 (318)
111 3v8s_A RHO-associated protein 100.0 3.4E-39 1.2E-43 366.3 13.5 260 661-962 63-331 (410)
112 1o6v_A Internalin A; bacterial 100.0 1.5E-37 5E-42 362.6 27.6 358 110-563 33-390 (466)
113 2xir_A Vascular endothelial gr 100.0 1.2E-38 4E-43 352.3 17.4 275 658-970 18-313 (316)
114 4dc2_A Protein kinase C IOTA t 100.0 2.3E-38 7.8E-43 357.5 20.1 258 667-961 52-319 (396)
115 2pmi_A Negative RE, cyclin-dep 100.0 3.6E-38 1.2E-42 348.2 21.2 277 666-961 4-294 (317)
116 3kfa_A Tyrosine-protein kinase 100.0 1.1E-38 3.7E-43 347.6 16.9 271 666-980 12-284 (288)
117 3og7_A AKAP9-BRAF fusion prote 100.0 5.6E-39 1.9E-43 349.9 14.6 261 666-967 23-288 (289)
118 1ob3_A PFPK5, cell division co 100.0 3.8E-39 1.3E-43 351.0 13.2 273 667-961 2-281 (288)
119 4aw2_A Serine/threonine-protei 100.0 1.7E-39 5.8E-44 371.7 10.8 264 659-961 66-339 (437)
120 1mp8_A Focal adhesion kinase 1 100.0 7.3E-39 2.5E-43 347.5 15.3 258 667-968 15-277 (281)
121 3g2f_A Bone morphogenetic prot 100.0 9.1E-39 3.1E-43 356.5 16.2 286 667-971 13-322 (336)
122 3o0g_A Cell division protein k 100.0 8E-39 2.7E-43 349.3 15.1 274 667-961 2-283 (292)
123 4fr4_A YANK1, serine/threonine 100.0 2.2E-38 7.6E-43 356.4 19.1 250 667-960 15-271 (384)
124 2yex_A Serine/threonine-protei 100.0 2.6E-38 8.9E-43 342.3 18.9 255 666-961 6-262 (276)
125 2w4o_A Calcium/calmodulin-depe 100.0 7.3E-39 2.5E-43 358.2 14.7 251 666-961 52-306 (349)
126 3qup_A Tyrosine-protein kinase 100.0 1.3E-38 4.6E-43 353.0 16.6 265 665-968 21-299 (323)
127 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-37 5.5E-42 359.2 26.2 399 77-566 42-448 (457)
128 2i1m_A Macrophage colony-stimu 100.0 2.1E-38 7.2E-43 353.0 17.7 265 666-968 45-327 (333)
129 3gni_B Strad alpha; kinase fol 100.0 2.7E-38 9.3E-43 359.9 19.0 284 666-961 24-334 (389)
130 1rdq_E PKA C-alpha, CAMP-depen 100.0 2E-38 6.8E-43 353.9 17.4 247 667-962 41-295 (350)
131 4f0f_A Serine/threonine-protei 100.0 2.4E-38 8.1E-43 344.7 17.6 255 667-965 19-287 (287)
132 3kmu_A ILK, integrin-linked ki 100.0 2.9E-38 9.8E-43 340.9 17.7 255 667-967 10-270 (271)
133 3is5_A Calcium-dependent prote 100.0 2.3E-38 7.7E-43 344.3 16.9 254 667-961 22-279 (285)
134 1xjd_A Protein kinase C, theta 100.0 1.1E-38 3.7E-43 354.8 14.5 252 664-961 14-270 (345)
135 1mqb_A Ephrin type-A receptor 100.0 5.9E-38 2E-42 348.9 20.4 264 667-971 44-313 (333)
136 3hko_A Calcium/calmodulin-depe 100.0 2.4E-38 8.2E-43 354.5 16.8 267 661-961 20-331 (345)
137 2wqm_A Serine/threonine-protei 100.0 2.2E-38 7.6E-43 349.0 16.3 269 667-973 32-303 (310)
138 3a8x_A Protein kinase C IOTA t 100.0 4.3E-38 1.5E-42 350.7 18.6 258 667-961 9-276 (345)
139 3a62_A Ribosomal protein S6 ki 100.0 3.6E-38 1.2E-42 349.5 18.0 249 667-961 17-277 (327)
140 1kob_A Twitchin; kinase, intra 100.0 4.5E-38 1.5E-42 355.3 18.8 253 666-961 50-305 (387)
141 1b6c_B TGF-B superfamily recep 100.0 6.7E-38 2.3E-42 350.4 20.1 276 658-969 33-338 (342)
142 3lzb_A Epidermal growth factor 100.0 3.4E-38 1.1E-42 349.8 17.4 258 667-967 15-278 (327)
143 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 1.8E-38 6.1E-43 367.7 15.8 259 667-970 184-443 (452)
144 3uc3_A Serine/threonine-protei 100.0 5.7E-38 2E-42 352.5 19.3 256 666-964 19-278 (361)
145 3llt_A Serine/threonine kinase 100.0 7E-39 2.4E-43 361.0 11.9 282 654-961 22-356 (360)
146 3f66_A Hepatocyte growth facto 100.0 5.1E-38 1.7E-42 344.1 18.4 265 667-971 25-295 (298)
147 2y94_A 5'-AMP-activated protei 100.0 6.2E-38 2.1E-42 362.4 19.8 249 667-962 16-268 (476)
148 2x4f_A Myosin light chain kina 100.0 4.5E-38 1.5E-42 354.5 18.1 248 672-962 94-344 (373)
149 3dbq_A Dual specificity protei 100.0 4.2E-38 1.4E-42 351.8 17.6 255 666-963 8-276 (343)
150 3pls_A Macrophage-stimulating 100.0 1.8E-37 6.1E-42 339.8 22.2 265 668-971 22-291 (298)
151 4hgt_A Casein kinase I isoform 100.0 7.7E-38 2.6E-42 342.3 19.2 281 665-980 7-294 (296)
152 1qpc_A LCK kinase; alpha beta 100.0 1.2E-37 4.1E-42 337.6 20.1 258 667-969 13-271 (279)
153 3kk8_A Calcium/calmodulin depe 100.0 1.1E-37 3.7E-42 339.0 19.7 255 666-963 5-264 (284)
154 2i0e_A Protein kinase C-beta I 100.0 4.4E-38 1.5E-42 351.1 17.0 250 666-961 19-277 (353)
155 3p1a_A MYT1 kinase, membrane-a 100.0 6.5E-38 2.2E-42 345.1 18.1 246 667-961 57-305 (311)
156 2eue_A Carbon catabolite derep 100.0 7.3E-38 2.5E-42 338.5 18.1 248 667-962 13-264 (275)
157 3cc6_A Protein tyrosine kinase 100.0 7.4E-38 2.5E-42 339.6 18.0 259 666-968 11-274 (281)
158 3g33_A Cell division protein k 100.0 1.9E-38 6.4E-43 349.2 13.3 275 665-961 7-297 (308)
159 1p4o_A Insulin-like growth fac 100.0 4.2E-38 1.4E-42 348.9 16.1 263 665-966 23-298 (322)
160 4agu_A Cyclin-dependent kinase 100.0 1.1E-37 3.7E-42 343.8 19.2 272 667-961 3-285 (311)
161 3gxj_A TGF-beta receptor type- 100.0 4.5E-40 1.5E-44 361.4 0.2 268 666-969 2-299 (303)
162 3kn6_A Ribosomal protein S6 ki 100.0 3.4E-38 1.2E-42 349.3 15.3 253 672-963 16-273 (325)
163 3fdn_A Serine/threonine-protei 100.0 8E-38 2.7E-42 339.0 17.9 253 666-966 8-263 (279)
164 3brb_A Proto-oncogene tyrosine 100.0 3E-38 1E-42 348.5 14.8 269 663-970 30-311 (313)
165 2vd5_A DMPK protein; serine/th 100.0 8.2E-39 2.8E-43 363.5 10.5 263 659-961 53-328 (412)
166 3ork_A Serine/threonine protei 100.0 1.5E-38 5E-43 350.5 12.2 262 666-966 11-280 (311)
167 3i6u_A CDS1, serine/threonine- 100.0 7.2E-38 2.5E-42 358.9 18.2 255 665-962 133-401 (419)
168 2ozo_A Tyrosine-protein kinase 100.0 5.9E-38 2E-42 375.8 18.2 257 674-972 343-603 (613)
169 2zmd_A Dual specificity protei 100.0 9.1E-38 3.1E-42 354.5 18.7 254 667-963 56-323 (390)
170 1fvr_A Tyrosine-protein kinase 100.0 1.2E-37 4E-42 346.0 19.0 263 667-971 25-304 (327)
171 3c1x_A Hepatocyte growth facto 100.0 4.1E-38 1.4E-42 354.6 15.5 264 668-971 90-359 (373)
172 2yfx_A Tyrosine-protein kinase 100.0 1.2E-37 4.1E-42 345.9 19.0 264 666-968 29-305 (327)
173 3uzp_A CKI-delta, CKID, casein 100.0 1.8E-37 6.3E-42 339.3 20.2 279 666-979 8-293 (296)
174 2a2a_A Death-associated protei 100.0 7.5E-38 2.6E-42 346.5 17.3 253 666-961 11-273 (321)
175 1cm8_A Phosphorylated MAP kina 100.0 7.5E-38 2.5E-42 352.4 17.4 269 666-961 24-308 (367)
176 3f3z_A Calcium/calmodulin-depe 100.0 7.6E-38 2.6E-42 338.8 16.8 254 666-964 8-265 (277)
177 3lxl_A Tyrosine-protein kinase 100.0 3.6E-38 1.2E-42 350.1 14.5 272 667-968 23-304 (327)
178 3mtl_A Cell division protein k 100.0 1.5E-38 5.3E-43 352.3 11.3 275 667-962 2-283 (324)
179 4fvq_A Tyrosine-protein kinase 100.0 2.6E-38 8.9E-43 344.8 12.6 255 667-971 8-279 (289)
180 2jii_A Serine/threonine-protei 100.0 3.7E-38 1.3E-42 353.7 14.1 273 667-972 42-341 (352)
181 2ac3_A MAP kinase-interacting 100.0 1E-37 3.5E-42 344.8 17.2 275 667-962 12-297 (316)
182 3a7i_A MST3 kinase, serine/thr 100.0 3.6E-37 1.2E-41 338.2 21.3 253 667-965 22-275 (303)
183 1u5q_A Serine/threonine protei 100.0 1.2E-37 4.2E-42 347.7 17.8 250 667-964 54-309 (348)
184 2id5_A Lingo-1, leucine rich r 100.0 2.7E-37 9.2E-42 362.0 21.6 348 204-589 14-361 (477)
185 2acx_A G protein-coupled recep 100.0 9.6E-38 3.3E-42 365.1 17.5 255 666-961 183-445 (576)
186 2v62_A Serine/threonine-protei 100.0 6.7E-38 2.3E-42 350.4 15.5 272 667-967 37-328 (345)
187 2qr7_A Ribosomal protein S6 ki 100.0 6.5E-38 2.2E-42 348.8 15.2 255 666-964 21-281 (342)
188 3c4z_A Rhodopsin kinase; Ser/T 100.0 1.3E-37 4.5E-42 363.5 18.4 257 667-961 185-449 (543)
189 2buj_A Serine/threonine-protei 100.0 4.6E-38 1.6E-42 347.7 13.8 273 666-969 28-308 (317)
190 4ejn_A RAC-alpha serine/threon 100.0 3.7E-38 1.3E-42 365.0 13.7 250 666-961 147-405 (446)
191 3cok_A Serine/threonine-protei 100.0 5.9E-38 2E-42 339.9 14.4 250 667-961 11-263 (278)
192 3eqc_A Dual specificity mitoge 100.0 5.9E-38 2E-42 353.4 14.9 266 667-963 33-327 (360)
193 3dls_A PAS domain-containing s 100.0 6.4E-38 2.2E-42 348.4 14.7 245 665-962 22-276 (335)
194 1nxk_A MAP kinase-activated pr 100.0 2E-37 6.7E-42 352.8 18.9 255 667-964 61-325 (400)
195 3ttj_A Mitogen-activated prote 100.0 2.3E-37 8E-42 358.5 19.7 272 666-962 61-357 (464)
196 2a19_B Interferon-induced, dou 100.0 2.1E-37 7.1E-42 336.7 18.0 252 666-971 10-278 (284)
197 3lm5_A Serine/threonine-protei 100.0 2.3E-37 8E-42 343.3 18.5 267 655-962 16-289 (327)
198 2w1i_A JAK2; chromosomal rearr 100.0 1.5E-37 5E-42 344.9 16.7 273 667-969 41-324 (326)
199 1xbb_A Tyrosine-protein kinase 100.0 2.5E-37 8.6E-42 337.3 18.3 259 667-968 16-280 (291)
200 2h8h_A Proto-oncogene tyrosine 100.0 6.1E-38 2.1E-42 370.5 14.3 258 667-969 267-525 (535)
201 1x8b_A WEE1HU, WEE1-like prote 100.0 2.4E-37 8.3E-42 336.9 17.9 248 666-961 10-280 (289)
202 3e7e_A HBUB1, BUB1A, mitotic c 100.0 1.3E-37 4.4E-42 351.1 16.3 257 666-970 64-342 (365)
203 3oz6_A Mitogen-activated prote 100.0 2.2E-37 7.6E-42 352.1 18.3 285 665-961 7-329 (388)
204 1byg_A CSK, protein (C-termina 100.0 1.3E-37 4.3E-42 337.2 15.3 253 667-969 21-275 (278)
205 2r5t_A Serine/threonine-protei 100.0 7.8E-38 2.7E-42 351.5 14.0 245 667-957 38-286 (373)
206 2h34_A Serine/threonine-protei 100.0 2.5E-37 8.7E-42 340.1 17.8 263 666-970 33-299 (309)
207 3qyz_A Mitogen-activated prote 100.0 2.2E-37 7.6E-42 348.9 17.6 277 665-962 25-315 (364)
208 3bhy_A Death-associated protei 100.0 1.8E-37 6.2E-42 337.0 16.3 258 667-967 5-274 (283)
209 3eb0_A Putative uncharacterize 100.0 1.8E-37 6.3E-42 352.0 16.6 273 664-961 4-322 (383)
210 2w5a_A Serine/threonine-protei 100.0 7.9E-38 2.7E-42 339.1 13.0 262 666-965 5-272 (279)
211 3rp9_A Mitogen-activated prote 100.0 5.4E-37 1.8E-41 357.0 20.6 287 666-961 52-397 (458)
212 2fst_X Mitogen-activated prote 100.0 2.2E-37 7.4E-42 348.2 16.5 269 666-961 28-312 (367)
213 2y7j_A Phosphorylase B kinase 100.0 6.5E-37 2.2E-41 344.6 20.4 258 661-961 88-360 (365)
214 3sv0_A Casein kinase I-like; t 100.0 4E-37 1.4E-41 356.3 18.8 271 666-970 6-281 (483)
215 4fl3_A Tyrosine-protein kinase 100.0 3.6E-37 1.2E-41 369.7 19.0 254 673-969 375-633 (635)
216 3o6n_A APL1; leucine-rich repe 100.0 9.8E-37 3.3E-41 347.3 21.7 350 53-440 2-352 (390)
217 1vzo_A Ribosomal protein S6 ki 100.0 1.7E-37 6E-42 348.1 15.0 256 667-963 54-324 (355)
218 2jam_A Calcium/calmodulin-depe 100.0 4.7E-37 1.6E-41 337.4 17.9 253 666-963 8-264 (304)
219 3pg1_A Mitogen-activated prote 100.0 2.9E-37 1E-41 348.0 16.5 281 659-961 14-317 (362)
220 3mwu_A Calmodulin-domain prote 100.0 6.3E-37 2.2E-41 358.9 19.7 254 666-963 21-279 (486)
221 2rku_A Serine/threonine-protei 100.0 2.6E-37 9E-42 337.7 15.3 252 667-964 15-269 (294)
222 1ua2_A CAK, cell division prot 100.0 4.4E-37 1.5E-41 343.9 17.4 277 664-963 7-294 (346)
223 2vgo_A Serine/threonine-protei 100.0 1E-36 3.4E-41 331.3 19.8 249 667-963 14-265 (284)
224 3n9x_A Phosphotransferase; mal 100.0 5.7E-37 1.9E-41 353.2 18.8 287 666-961 25-362 (432)
225 3an0_A Dual specificity mitoge 100.0 1.1E-37 3.9E-42 348.2 12.4 257 666-963 50-313 (340)
226 4aaa_A Cyclin-dependent kinase 100.0 2.8E-37 9.4E-42 343.5 15.3 273 667-962 25-308 (331)
227 3fme_A Dual specificity mitoge 100.0 1.6E-37 5.6E-42 338.6 13.2 256 666-962 6-268 (290)
228 3byv_A Rhoptry kinase; malaria 100.0 2.1E-38 7.1E-43 359.0 5.9 250 666-966 72-367 (377)
229 3nyv_A Calmodulin-domain prote 100.0 3.5E-37 1.2E-41 361.2 16.2 254 666-963 25-284 (484)
230 3mi9_A Cell division protein k 100.0 8.4E-37 2.9E-41 342.7 18.5 278 667-963 17-314 (351)
231 2owb_A Serine/threonine-protei 100.0 4.5E-37 1.5E-41 342.2 16.1 252 666-963 40-294 (335)
232 2h6d_A 5'-AMP-activated protei 100.0 6.9E-37 2.4E-41 331.1 17.1 249 667-962 11-263 (276)
233 1u46_A ACK-1, activated CDC42 100.0 4E-37 1.4E-41 335.8 15.3 261 667-968 18-285 (291)
234 4e7w_A Glycogen synthase kinas 100.0 5.2E-37 1.8E-41 349.0 16.8 270 667-961 40-322 (394)
235 3gbz_A Kinase, CMGC CDK; ssgci 100.0 1.2E-37 3.9E-42 346.0 11.0 273 665-961 32-319 (329)
236 3lij_A Calcium/calmodulin depe 100.0 9.6E-37 3.3E-41 357.9 19.3 251 667-961 37-292 (494)
237 3com_A Serine/threonine-protei 100.0 2.2E-36 7.4E-41 333.8 20.9 253 665-962 27-280 (314)
238 3q5i_A Protein kinase; CDPK, m 100.0 9.1E-37 3.1E-41 359.0 19.0 254 666-963 35-304 (504)
239 3nsz_A CK II alpha, casein kin 100.0 1.4E-36 4.8E-41 337.9 19.4 267 667-961 36-320 (330)
240 1t4h_A Serine/threonine-protei 100.0 1.2E-36 4.2E-41 331.7 18.4 250 668-961 27-283 (290)
241 1j1b_A Glycogen synthase kinas 100.0 5.8E-37 2E-41 351.5 16.6 271 667-962 54-338 (420)
242 2vwi_A Serine/threonine-protei 100.0 8.3E-38 2.8E-42 343.3 9.1 269 666-961 14-288 (303)
243 2pml_X PFPK7, Ser/Thr protein 100.0 6.9E-37 2.4E-41 343.1 16.4 269 666-961 30-323 (348)
244 2clq_A Mitogen-activated prote 100.0 1E-36 3.5E-41 333.2 17.3 253 668-961 23-279 (295)
245 3kvw_A DYRK2, dual specificity 100.0 1.1E-36 3.7E-41 350.1 18.2 197 666-886 96-301 (429)
246 4exu_A Mitogen-activated prote 100.0 7.2E-37 2.5E-41 345.4 16.4 269 666-962 41-325 (371)
247 2b9h_A MAP kinase FUS3, mitoge 100.0 7.1E-37 2.4E-41 343.7 16.1 283 666-962 10-307 (353)
248 2ycf_A Serine/threonine-protei 100.0 8E-37 2.7E-41 338.4 16.3 253 666-961 9-275 (322)
249 2id5_A Lingo-1, leucine rich r 100.0 5.2E-36 1.8E-40 351.1 24.0 284 196-514 51-334 (477)
250 2x7f_A TRAF2 and NCK-interacti 100.0 6.2E-37 2.1E-41 340.1 14.8 261 657-961 14-287 (326)
251 2wtk_C Serine/threonine-protei 100.0 3.2E-36 1.1E-40 331.0 20.1 255 666-963 4-266 (305)
252 3e3p_A Protein kinase, putativ 100.0 1.9E-36 6.5E-41 341.2 18.6 281 660-962 16-316 (360)
253 3pfq_A PKC-B, PKC-beta, protei 100.0 1.2E-36 4.1E-41 367.7 18.1 251 665-961 339-598 (674)
254 2r3i_A Cell division protein k 100.0 1.3E-36 4.5E-41 333.0 16.7 273 667-961 3-284 (299)
255 3q60_A ROP5B; pseudokinase, tr 100.0 1.7E-37 5.9E-42 350.8 9.9 254 668-961 63-353 (371)
256 3oja_B Anopheles plasmodium-re 100.0 4.1E-36 1.4E-40 361.0 22.5 351 50-466 5-359 (597)
257 3ll6_A Cyclin G-associated kin 100.0 1.3E-36 4.6E-41 339.1 16.9 272 666-970 27-311 (337)
258 2j7t_A Serine/threonine-protei 100.0 1.2E-36 3.9E-41 334.0 15.7 253 666-961 18-276 (302)
259 2xrw_A Mitogen-activated prote 100.0 3E-36 1E-40 340.4 19.3 273 666-963 24-321 (371)
260 2y4i_B KSR2, HKSR2, kinase sup 100.0 1E-36 3.4E-41 337.3 14.9 266 666-972 32-307 (319)
261 3coi_A Mitogen-activated prote 100.0 4.7E-36 1.6E-40 336.8 19.7 268 666-961 23-306 (353)
262 1phk_A Phosphorylase kinase; g 100.0 3.3E-36 1.1E-40 329.7 17.8 253 666-961 16-284 (298)
263 1wak_A Serine/threonine-protei 100.0 1.7E-36 5.9E-41 346.5 16.0 271 666-961 36-392 (397)
264 1z57_A Dual specificity protei 100.0 3.1E-36 1.1E-40 336.4 17.5 267 667-961 14-329 (339)
265 2j0j_A Focal adhesion kinase 1 100.0 2.2E-36 7.6E-41 364.3 17.0 259 666-968 389-652 (656)
266 2i6l_A Mitogen-activated prote 100.0 3.1E-36 1.1E-40 333.5 16.4 274 666-962 10-307 (320)
267 3aln_A Dual specificity mitoge 100.0 1.6E-36 5.5E-41 336.8 14.1 259 667-963 22-288 (327)
268 3cek_A Dual specificity protei 100.0 5.6E-36 1.9E-40 330.3 17.9 257 664-963 25-295 (313)
269 3rgf_A Cyclin-dependent kinase 100.0 4.5E-36 1.6E-40 343.3 17.8 279 668-963 21-336 (405)
270 2wei_A Calmodulin-domain prote 100.0 6.4E-36 2.2E-40 325.4 17.9 253 665-961 20-277 (287)
271 1blx_A Cyclin-dependent kinase 100.0 4.8E-36 1.6E-40 333.0 17.1 275 665-961 9-297 (326)
272 1ogq_A PGIP-2, polygalacturona 100.0 5E-36 1.7E-40 329.8 16.2 258 332-594 51-312 (313)
273 2rio_A Serine/threonine-protei 100.0 5.3E-36 1.8E-40 345.1 15.4 256 668-961 16-296 (434)
274 3fhr_A MAP kinase-activated pr 100.0 5.6E-36 1.9E-40 333.2 15.0 255 666-964 27-291 (336)
275 3a99_A Proto-oncogene serine/t 100.0 3.9E-36 1.3E-40 332.3 12.8 242 666-961 42-294 (320)
276 2vx3_A Dual specificity tyrosi 100.0 2.1E-35 7.3E-40 334.9 19.1 200 665-886 52-260 (382)
277 1zy4_A Serine/threonine-protei 100.0 8.3E-36 2.8E-40 327.2 14.0 264 666-961 5-284 (303)
278 1q8y_A SR protein kinase; tran 100.0 8.8E-36 3E-40 337.5 14.5 271 667-962 19-335 (373)
279 2eu9_A Dual specificity protei 100.0 1.9E-35 6.3E-40 332.4 16.6 268 666-961 18-334 (355)
280 2iwi_A Serine/threonine-protei 100.0 1.3E-35 4.4E-40 327.2 13.7 247 662-962 26-285 (312)
281 3o6n_A APL1; leucine-rich repe 100.0 1.2E-34 4.1E-39 330.1 20.8 336 199-588 43-378 (390)
282 2dyl_A Dual specificity mitoge 100.0 5.4E-35 1.8E-39 323.3 17.3 252 667-961 25-284 (318)
283 3p23_A Serine/threonine-protei 100.0 2.7E-35 9.3E-40 337.9 15.1 251 667-961 24-284 (432)
284 3qa8_A MGC80376 protein; kinas 100.0 1.3E-35 4.5E-40 349.9 11.0 278 667-967 14-309 (676)
285 3oja_B Anopheles plasmodium-re 100.0 1.6E-34 5.6E-39 347.1 20.7 336 199-588 49-384 (597)
286 4fcg_A Uncharacterized protein 100.0 1E-34 3.4E-39 321.3 14.2 280 30-391 23-313 (328)
287 2pzi_A Probable serine/threoni 100.0 1.6E-34 5.4E-39 352.1 17.0 239 667-965 80-326 (681)
288 4fmz_A Internalin; leucine ric 100.0 6.5E-33 2.2E-37 310.5 23.9 305 199-561 42-346 (347)
289 3uqc_A Probable conserved tran 100.0 9.8E-34 3.4E-38 307.1 15.5 235 667-970 31-268 (286)
290 4fmz_A Internalin; leucine ric 100.0 1.1E-32 3.7E-37 308.8 24.1 305 221-582 40-344 (347)
291 2vuw_A Serine/threonine-protei 100.0 3E-34 1E-38 319.7 9.0 244 667-961 20-332 (336)
292 3m2w_A MAP kinase-activated pr 100.0 1.3E-33 4.4E-38 309.0 13.8 233 667-963 17-259 (299)
293 3dzo_A Rhoptry kinase domain; 100.0 1.9E-34 6.5E-39 329.8 7.3 243 668-961 79-364 (413)
294 2ft3_A Biglycan; proteoglycan, 100.0 9.5E-32 3.2E-36 298.9 24.9 268 282-559 54-331 (332)
295 1z7x_W Ribonuclease inhibitor; 100.0 4.2E-36 1.4E-40 350.5 -12.7 357 177-538 4-412 (461)
296 2ft3_A Biglycan; proteoglycan, 100.0 7.1E-32 2.4E-36 299.9 21.9 285 80-437 36-330 (332)
297 1xku_A Decorin; proteoglycan, 100.0 2.3E-31 7.7E-36 295.6 25.8 246 84-400 38-284 (330)
298 1xku_A Decorin; proteoglycan, 100.0 4.9E-31 1.7E-35 292.9 23.5 268 283-559 53-330 (330)
299 1z7x_W Ribonuclease inhibitor; 100.0 9.6E-36 3.3E-40 347.4 -16.6 395 101-542 3-445 (461)
300 3ogk_B Coronatine-insensitive 100.0 8.7E-33 3E-37 333.2 -7.1 437 64-539 41-528 (592)
301 2z66_A Variable lymphocyte rec 100.0 1.4E-29 4.9E-34 277.9 18.5 287 62-424 4-295 (306)
302 3oja_A Leucine-rich immune mol 100.0 1.1E-31 3.8E-36 313.1 -1.4 218 329-561 32-250 (487)
303 2z80_A TOLL-like receptor 2, v 100.0 8.5E-30 2.9E-34 285.7 12.8 280 281-566 30-319 (353)
304 2z66_A Variable lymphocyte rec 100.0 1.1E-29 3.9E-34 278.8 12.8 251 285-564 10-264 (306)
305 3g06_A SSPH2 (leucine-rich rep 100.0 2E-29 7E-34 299.5 15.2 293 52-427 10-308 (622)
306 4fcg_A Uncharacterized protein 100.0 1E-28 3.4E-33 273.2 17.9 235 307-562 81-315 (328)
307 3zyi_A Leucine-rich repeat-con 100.0 3.7E-28 1.3E-32 281.9 20.8 250 284-563 56-305 (452)
308 1ozn_A Reticulon 4 receptor; N 100.0 1.6E-28 5.4E-33 266.6 15.1 224 285-513 14-238 (285)
309 3zyj_A Leucine-rich repeat-con 100.0 4.5E-28 1.5E-32 280.2 19.7 248 284-562 45-293 (440)
310 1ozn_A Reticulon 4 receptor; N 100.0 2.3E-28 7.7E-33 265.4 15.5 227 310-564 14-241 (285)
311 2z80_A TOLL-like receptor 2, v 100.0 1.3E-28 4.5E-33 276.0 13.9 273 310-587 34-317 (353)
312 3ogk_B Coronatine-insensitive 100.0 4E-31 1.4E-35 318.7 -7.3 413 117-563 65-528 (592)
313 1wwl_A Monocyte differentiatio 99.9 3.1E-29 1.1E-33 275.6 5.7 255 97-369 39-310 (312)
314 3zyi_A Leucine-rich repeat-con 99.9 1.9E-27 6.5E-32 275.9 20.4 248 251-513 55-303 (452)
315 1wwl_A Monocyte differentiatio 99.9 1.8E-29 6E-34 277.7 3.0 223 333-562 65-310 (312)
316 3zyj_A Leucine-rich repeat-con 99.9 2.3E-27 7.9E-32 274.2 20.6 248 251-513 44-292 (440)
317 3o53_A Protein LRIM1, AGAP0063 99.9 2.3E-28 7.9E-33 269.4 9.7 270 77-421 10-281 (317)
318 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-26 5.6E-31 274.6 23.4 269 101-476 40-308 (622)
319 3o53_A Protein LRIM1, AGAP0063 99.9 3E-28 1E-32 268.5 6.3 249 197-494 30-281 (317)
320 4azs_A Methyltransferase WBDD; 99.9 1.1E-27 3.8E-32 282.9 7.5 185 675-883 242-437 (569)
321 2p1m_B Transport inhibitor res 99.9 1.6E-30 5.6E-35 313.5 -17.7 465 64-560 34-543 (594)
322 3oja_A Leucine-rich immune mol 99.9 2.2E-27 7.5E-32 276.8 6.8 233 309-556 36-270 (487)
323 2z62_A TOLL-like receptor 4, v 99.9 1.9E-25 6.6E-30 241.0 17.7 228 312-567 12-243 (276)
324 2z62_A TOLL-like receptor 4, v 99.9 5.1E-25 1.7E-29 237.7 17.5 231 285-541 10-241 (276)
325 2p1m_B Transport inhibitor res 99.9 2.3E-28 7.9E-33 294.7 -12.5 422 78-536 67-543 (594)
326 2o6q_A Variable lymphocyte rec 99.9 7.9E-24 2.7E-28 227.4 19.8 205 332-564 17-221 (270)
327 2o6q_A Variable lymphocyte rec 99.9 1.6E-23 5.6E-28 224.9 20.1 203 307-513 16-218 (270)
328 3en9_A Glycoprotease, O-sialog 99.9 4.6E-25 1.6E-29 259.2 8.4 193 669-885 338-539 (540)
329 3rfs_A Internalin B, repeat mo 99.9 3.6E-24 1.2E-28 230.2 14.0 163 375-545 81-243 (272)
330 1p9a_G Platelet glycoprotein I 99.9 9.8E-24 3.4E-28 228.6 16.9 178 380-562 32-209 (290)
331 3goz_A Leucine-rich repeat-con 99.9 4.9E-25 1.7E-29 247.6 4.8 264 106-398 3-303 (362)
332 3rfs_A Internalin B, repeat mo 99.9 1.3E-23 4.4E-28 225.9 15.3 204 309-524 43-246 (272)
333 1p9a_G Platelet glycoprotein I 99.9 2.4E-23 8.3E-28 225.5 15.9 201 330-538 9-209 (290)
334 3m19_A Variable lymphocyte rec 99.9 2.1E-23 7.2E-28 221.4 14.9 191 63-264 3-193 (251)
335 4glp_A Monocyte differentiatio 99.9 1.3E-23 4.3E-28 230.8 11.5 224 332-562 65-308 (310)
336 4glp_A Monocyte differentiatio 99.9 3.1E-23 1.1E-27 227.6 13.9 226 283-537 65-307 (310)
337 2ast_B S-phase kinase-associat 99.9 9.3E-25 3.2E-29 243.0 1.5 163 64-260 36-205 (336)
338 3goz_A Leucine-rich repeat-con 99.9 4.7E-25 1.6E-29 247.8 -1.1 250 313-563 4-299 (362)
339 2xwt_C Thyrotropin receptor; s 99.9 7.5E-23 2.6E-27 215.5 13.3 199 332-558 32-236 (239)
340 2xwt_C Thyrotropin receptor; s 99.9 1.1E-22 3.7E-27 214.3 13.5 187 294-489 23-218 (239)
341 2ca6_A RAN GTPase-activating p 99.9 2.8E-25 9.4E-30 252.2 -8.0 188 376-564 91-319 (386)
342 2ca6_A RAN GTPase-activating p 99.9 7.9E-25 2.7E-29 248.5 -4.9 252 116-393 23-317 (386)
343 3m19_A Variable lymphocyte rec 99.9 9.3E-22 3.2E-26 208.7 16.5 180 356-563 15-194 (251)
344 1h6u_A Internalin H; cell adhe 99.9 6.7E-22 2.3E-26 216.4 13.2 206 313-537 25-230 (308)
345 2ast_B S-phase kinase-associat 99.9 6.7E-24 2.3E-28 236.1 -2.8 254 282-566 47-311 (336)
346 3cvr_A Invasion plasmid antige 99.9 1.6E-22 5.3E-27 237.3 8.2 208 54-305 33-253 (571)
347 1h6u_A Internalin H; cell adhe 99.9 1.4E-21 4.7E-26 213.9 14.6 190 308-514 42-231 (308)
348 4ay9_X Follicle-stimulating ho 99.9 2E-21 6.8E-26 217.0 15.6 242 285-560 12-258 (350)
349 1zar_A RIO2 kinase; serine kin 99.9 6.8E-22 2.3E-26 212.7 11.1 139 662-819 85-240 (282)
350 4ay9_X Follicle-stimulating ho 99.9 5.9E-21 2E-25 213.1 17.4 199 253-465 12-215 (350)
351 3cvr_A Invasion plasmid antige 99.8 3.2E-21 1.1E-25 226.2 13.5 188 308-548 60-254 (571)
352 2o6s_A Variable lymphocyte rec 99.8 2E-20 6.8E-25 192.4 16.1 160 332-499 29-188 (208)
353 2o6s_A Variable lymphocyte rec 99.8 1.2E-20 4.1E-25 194.0 14.3 181 334-549 10-190 (208)
354 4b8c_D Glucose-repressible alc 99.8 5.9E-21 2E-25 232.6 3.6 232 31-341 129-369 (727)
355 2v70_A SLIT-2, SLIT homolog 2 99.8 8.3E-20 2.8E-24 189.1 9.6 155 407-565 15-170 (220)
356 3e6j_A Variable lymphocyte rec 99.8 6.2E-19 2.1E-23 183.8 15.6 157 62-238 16-172 (229)
357 2v9t_B SLIT homolog 2 protein 99.8 1.9E-19 6.6E-24 186.3 9.9 154 407-564 15-168 (220)
358 1m9s_A Internalin B; cell inva 99.8 2.7E-19 9.2E-24 212.4 11.3 190 283-490 22-211 (605)
359 1m9s_A Internalin B; cell inva 99.8 4.7E-19 1.6E-23 210.3 12.2 197 199-445 19-215 (605)
360 1h6t_A Internalin B; cell adhe 99.8 1.7E-19 5.7E-24 195.5 7.5 170 329-537 44-213 (291)
361 1dce_A Protein (RAB geranylger 99.8 1.6E-21 5.5E-26 230.2 -9.7 204 328-566 346-551 (567)
362 2xot_A Amphoterin-induced prot 99.8 5.6E-19 1.9E-23 197.9 10.3 176 358-561 21-202 (361)
363 2v70_A SLIT-2, SLIT homolog 2 99.8 1.9E-18 6.4E-23 178.9 13.1 153 285-441 14-167 (220)
364 1h6t_A Internalin B; cell adhe 99.8 1.1E-18 3.7E-23 189.1 11.7 168 307-489 46-213 (291)
365 1dce_A Protein (RAB geranylger 99.8 1.1E-20 3.8E-25 223.0 -4.5 202 199-433 347-566 (567)
366 2v9t_B SLIT homolog 2 protein 99.8 3.3E-18 1.1E-22 177.0 14.7 153 285-441 14-166 (220)
367 2xot_A Amphoterin-induced prot 99.8 1.1E-18 3.6E-23 195.7 11.1 129 310-441 21-150 (361)
368 3e6j_A Variable lymphocyte rec 99.8 3.7E-18 1.3E-22 177.9 13.6 153 408-565 24-176 (229)
369 4b8c_D Glucose-repressible alc 99.7 2.1E-19 7.3E-24 218.9 3.3 183 322-538 215-405 (727)
370 1w8a_A SLIT protein; signaling 99.7 5.9E-18 2E-22 171.1 9.5 109 457-565 34-143 (192)
371 3sb4_A Hypothetical leucine ri 99.7 1.8E-18 6E-23 191.3 5.7 66 192-259 84-157 (329)
372 1zth_A RIO1 serine protein kin 99.7 4.5E-18 1.5E-22 180.7 8.6 137 669-821 49-219 (258)
373 1xeu_A Internalin C; cellular 99.7 2.2E-18 7.7E-23 183.6 5.4 166 308-489 20-185 (263)
374 1xeu_A Internalin C; cellular 99.7 5.2E-18 1.8E-22 180.7 7.1 169 355-563 19-187 (263)
375 4ezg_A Putative uncharacterize 99.7 1.6E-17 5.3E-22 168.9 9.7 151 402-561 43-194 (197)
376 3sb4_A Hypothetical leucine ri 99.7 7.9E-18 2.7E-22 186.1 6.8 298 91-433 13-327 (329)
377 4ezg_A Putative uncharacterize 99.7 2.7E-17 9.1E-22 167.2 9.7 154 352-537 41-194 (197)
378 1w8a_A SLIT protein; signaling 99.7 4.5E-17 1.5E-21 164.6 9.9 175 406-588 11-187 (192)
379 2ell_A Acidic leucine-rich nuc 99.7 1.7E-16 5.8E-21 156.8 10.1 134 100-238 23-160 (168)
380 2wfh_A SLIT homolog 2 protein 99.6 4.5E-16 1.5E-20 157.2 9.6 130 430-564 13-142 (193)
381 2je0_A Acidic leucine-rich nuc 99.6 4.5E-16 1.5E-20 150.3 8.1 128 100-258 16-148 (149)
382 2ell_A Acidic leucine-rich nuc 99.6 8.8E-16 3E-20 151.6 10.0 136 427-565 24-164 (168)
383 4gyi_A RIO2 kinase; protein ki 99.6 5.9E-16 2E-20 169.9 7.0 139 668-821 96-265 (397)
384 2wfh_A SLIT homolog 2 protein 99.6 4.8E-15 1.6E-19 149.7 12.8 127 311-441 14-140 (193)
385 2je0_A Acidic leucine-rich nuc 99.6 1.2E-15 4.1E-20 147.3 7.0 128 427-557 17-149 (149)
386 2o6r_A Variable lymphocyte rec 99.6 5.8E-15 2E-19 147.0 11.7 132 430-565 10-141 (177)
387 2o6r_A Variable lymphocyte rec 99.6 9.6E-15 3.3E-19 145.5 12.6 129 311-442 11-139 (177)
388 1ds9_A Outer arm dynein; leuci 99.6 1.1E-16 3.7E-21 162.9 -2.6 156 97-263 14-185 (198)
389 4fdw_A Leucine rich hypothetic 99.5 8.5E-14 2.9E-18 157.0 19.0 238 178-437 137-380 (401)
390 1ds9_A Outer arm dynein; leuci 99.5 1.7E-16 6E-21 161.3 -4.4 154 400-561 15-185 (198)
391 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.4E-19 143.2 9.1 135 95-238 13-153 (176)
392 4fdw_A Leucine rich hypothetic 99.5 1.7E-13 5.9E-18 154.4 17.5 241 283-560 136-382 (401)
393 1a9n_A U2A', U2A'; complex (nu 99.5 2.7E-14 9.2E-19 142.0 7.2 133 423-562 15-154 (176)
394 4fs7_A Uncharacterized protein 99.4 2.9E-12 9.8E-17 145.1 21.1 311 94-435 64-374 (394)
395 4fs7_A Uncharacterized protein 99.4 1.5E-12 5.2E-17 147.4 18.1 60 173-235 68-127 (394)
396 3g39_A Variable lymphocyte rec 99.4 3E-13 1E-17 133.4 9.8 106 457-565 14-119 (170)
397 2r9u_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 132.4 9.8 106 457-565 17-122 (174)
398 3g39_A Variable lymphocyte rec 99.4 7.6E-13 2.6E-17 130.5 10.9 105 334-441 12-116 (170)
399 2r9u_A Variable lymphocyte rec 99.4 1.6E-12 5.5E-17 128.5 11.0 104 334-440 15-118 (174)
400 2ifg_A High affinity nerve gro 99.3 3.8E-12 1.3E-16 141.5 9.5 109 65-190 8-117 (347)
401 3un9_A NLR family member X1; l 99.3 1.1E-13 3.8E-18 154.5 -3.2 168 101-296 72-253 (372)
402 3un9_A NLR family member X1; l 99.2 4.2E-13 1.4E-17 149.8 -2.9 113 77-189 72-196 (372)
403 2ifg_A High affinity nerve gro 99.2 1.1E-11 3.8E-16 137.8 7.7 103 457-562 13-117 (347)
404 4gt6_A Cell surface protein; l 99.2 1.5E-09 5E-14 122.8 22.1 308 96-439 58-369 (394)
405 4gt6_A Cell surface protein; l 99.1 1.9E-09 6.5E-14 121.8 21.8 108 422-536 283-390 (394)
406 3tm0_A Aminoglycoside 3'-phosp 99.1 1.3E-10 4.5E-15 123.5 11.2 146 663-819 10-212 (263)
407 1nd4_A Aminoglycoside 3'-phosp 99.1 2.3E-10 7.7E-15 121.6 8.9 137 668-820 21-214 (264)
408 3dxp_A Putative acyl-COA dehyd 99.0 2.5E-09 8.7E-14 119.2 12.9 143 672-821 43-249 (359)
409 3rw6_A Nuclear RNA export fact 98.9 1.7E-11 5.9E-16 128.2 -5.9 97 64-163 77-184 (267)
410 2ra8_A Uncharacterized protein 98.9 5.4E-10 1.8E-14 123.5 3.8 212 77-318 107-341 (362)
411 3sg8_A APH(2'')-ID; antibiotic 98.8 1.3E-09 4.5E-14 118.4 5.2 198 672-884 25-287 (304)
412 4h09_A Hypothetical leucine ri 98.8 2.4E-07 8.2E-12 103.9 20.9 121 422-547 235-355 (379)
413 2ra8_A Uncharacterized protein 98.8 3.3E-09 1.1E-13 117.1 4.9 158 78-238 140-320 (362)
414 4h09_A Hypothetical leucine ri 98.7 3.6E-07 1.2E-11 102.5 20.8 126 325-454 211-336 (379)
415 1io0_A Tropomodulin; LRR prote 98.6 4.2E-09 1.4E-13 105.0 0.6 124 91-238 26-164 (185)
416 3r70_A Aminoglycoside phosphot 98.5 4.2E-07 1.4E-11 99.3 11.4 138 668-822 38-239 (320)
417 1io0_A Tropomodulin; LRR prote 98.4 5.7E-08 2E-12 96.7 2.5 122 117-262 28-163 (185)
418 3rw6_A Nuclear RNA export fact 98.3 7.3E-08 2.5E-12 100.7 0.8 79 474-554 168-257 (267)
419 3tdw_A Gentamicin resistance p 98.3 3.2E-06 1.1E-10 91.5 12.2 136 672-820 24-224 (306)
420 3d1u_A Putative fructosamine-3 98.3 3.7E-06 1.3E-10 89.8 11.8 76 672-752 20-98 (288)
421 4gkh_A Aminoglycoside 3'-phosp 98.2 3.5E-06 1.2E-10 89.5 10.3 134 674-819 31-222 (272)
422 3ats_A Putative uncharacterize 98.1 8.4E-06 2.9E-10 90.4 11.1 82 673-754 26-123 (357)
423 3ovc_A Hygromycin-B 4-O-kinase 98.1 1.1E-05 3.7E-10 89.4 11.4 145 671-822 45-245 (362)
424 3e4g_A ATP synthase subunit S, 97.8 7.1E-06 2.4E-10 79.3 2.7 62 101-162 61-128 (176)
425 2q83_A YTAA protein; 2635576, 97.7 7.4E-05 2.5E-09 82.1 9.9 141 673-819 38-251 (346)
426 2olc_A MTR kinase, methylthior 97.7 0.0001 3.6E-09 82.8 11.3 76 672-749 35-120 (397)
427 3e4g_A ATP synthase subunit S, 97.7 1.1E-05 3.7E-10 78.0 2.3 84 77-160 61-150 (176)
428 1pgv_A TMD-1, tropomodulin TMD 97.7 9.5E-06 3.3E-10 80.0 1.8 72 92-163 32-112 (197)
429 3jr1_A Putative fructosamine-3 97.6 0.00027 9.2E-09 75.9 11.8 139 672-816 41-232 (312)
430 3f7w_A Putative fructosamine-3 97.4 0.00048 1.6E-08 73.5 9.9 77 670-751 18-97 (288)
431 2ppq_A HSK, HK, homoserine kin 97.3 0.00098 3.4E-08 72.3 11.2 160 656-819 6-216 (322)
432 2pyw_A Uncharacterized protein 97.2 0.00089 3.1E-08 75.7 10.7 77 790-881 232-313 (420)
433 3dxq_A Choline/ethanolamine ki 97.2 0.0012 4E-08 70.9 10.9 72 672-752 23-96 (301)
434 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00014 4.7E-09 71.7 3.0 45 119-163 35-84 (197)
435 1nw1_A Choline kinase (49.2 KD 97.0 0.0023 7.8E-08 72.3 11.3 74 672-752 78-160 (429)
436 3feg_A Choline/ethanolamine ki 97.0 0.0026 8.8E-08 70.2 11.2 143 672-820 55-254 (379)
437 1zyl_A Hypothetical protein YI 97.0 0.0075 2.6E-07 65.4 14.4 142 674-820 33-223 (328)
438 3csv_A Aminoglycoside phosphot 96.9 0.002 6.8E-08 70.3 9.5 143 673-821 24-218 (333)
439 3c5i_A Choline kinase; choline 96.7 0.0036 1.2E-07 69.3 9.3 74 672-751 38-121 (369)
440 2qg7_A Ethanolamine kinase PV0 96.6 0.01 3.6E-07 67.2 12.6 75 672-752 113-189 (458)
441 3i1a_A Spectinomycin phosphotr 96.5 0.013 4.4E-07 63.9 11.9 68 676-751 32-108 (339)
442 3rfe_A Platelet glycoprotein I 96.4 0.0046 1.6E-07 56.7 6.4 57 504-562 12-69 (130)
443 3rfe_A Platelet glycoprotein I 96.3 0.0051 1.7E-07 56.5 6.2 35 203-237 33-67 (130)
444 2yle_A Protein spire homolog 1 96.1 0.014 4.9E-07 57.5 8.5 103 749-883 33-135 (229)
445 3f2s_A CK, chetk-alpha, cholin 95.9 0.037 1.3E-06 61.2 11.7 145 672-820 57-280 (401)
446 3mes_A Choline kinase; malaria 95.3 0.088 3E-06 58.8 11.9 143 672-821 75-292 (424)
447 3g15_A CK, chetk-alpha, cholin 92.9 0.055 1.9E-06 60.3 3.8 30 791-820 245-280 (401)
448 4ann_A ESSB; membrane protein, 84.4 3.6 0.00012 40.5 9.1 123 722-892 43-165 (215)
449 2ks1_B Epidermal growth factor 83.9 1.6 5.5E-05 30.7 4.5 10 620-629 29-38 (44)
450 2l2t_A Receptor tyrosine-prote 78.7 4.4 0.00015 28.4 5.2 10 620-629 28-37 (44)
451 3cxl_A N-chimerin; SH2, RHO-GA 73.6 0.5 1.7E-05 53.4 -1.1 61 671-734 146-214 (463)
452 4ano_A ESSB; membrane protein, 67.0 12 0.0004 37.0 7.2 116 722-886 48-164 (219)
453 2jwa_A Receptor tyrosine-prote 62.0 13 0.00044 26.1 4.5 7 623-629 32-38 (44)
454 2k1k_A Ephrin type-A receptor 31.2 49 0.0017 22.4 3.4 11 611-621 21-31 (38)
455 2lz0_A Uncharacterized protein 20.6 2.5E+02 0.0085 23.4 6.8 40 324-364 13-52 (100)
456 2lz0_A Uncharacterized protein 20.6 1.2E+02 0.0042 25.4 4.9 40 371-411 12-51 (100)
457 3ox7_P MH027; urokinase-type p 20.0 22 0.00075 19.9 -0.0 8 64-71 7-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-76 Score=733.72 Aligned_cols=550 Identities=37% Similarity=0.543 Sum_probs=410.1
Q ss_pred cccHHhHHHHHHHHHhccCCCccccCCCCCCCCCCcceeeEEECCCCCeEEEEEcccCCcccc---cc------------
Q 042568 30 DQIIRDRASLVTFMSSIISAPEHALESWNSTDVHVCNWSGVKCNNSRNKVVELDLSARSIYGT---IS------------ 94 (983)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~~l~sw~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~---~~------------ 94 (983)
.+.++|++||++||+++. ||. .+++|+. +.+||.|.||+|+ +++|+.|||+++++.|. +|
T Consensus 8 ~~~~~~~~all~~k~~~~-~~~-~l~~W~~-~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLP-DKN-LLPDWSS-NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp CCHHHHHHHHHHHHTTCS-CTT-SSTTCCT-TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred cCCHHHHHHHHHHHhhCC-Ccc-cccCCCC-CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 346789999999999996 887 9999984 5689999999998 68999999999999887 54
Q ss_pred -----------cccccCCCCcEEeCcCCcCCCCCcc--ccCCCCCCCEEeccCccCCCCchhhh-cccccccEEeccCcc
Q 042568 95 -----------PALANLSSLIVLDLSKNFFQGHIPA--ELGSLIRLKQLSLSWNSLQGKIPSQL-GSLHQLEYLDLGNNK 160 (983)
Q Consensus 95 -----------~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~L~~L~~L~Ls~N~ 160 (983)
+.++++++|++|||++|.++|.+|. .++++++|++|+|++|.+++.+|..+ .++++|++|||++|+
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 3567778888888888888877777 77777777777777776665555433 333333333333333
Q ss_pred cc-------------------------------------------------cccCCcccccCCCcccceeecccccccC-
Q 042568 161 LV-------------------------------------------------GEIPIPIFCSNSSTSLQYIDLSNNSLTG- 190 (983)
Q Consensus 161 l~-------------------------------------------------~~~p~~~~~~~~l~~L~~L~Ls~N~l~~- 190 (983)
++ +.+|. + ..+++|++|+|++|.+++
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l---~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-L---GDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-C---TTCCSCCEEECCSSCCCSC
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-c---ccCCCCCEEECcCCcCCCc
Confidence 32 22221 1 123333333333333332
Q ss_pred ---------------------------------------------CCCCcccccccccceeecccCccccccchhhhccC
Q 042568 191 ---------------------------------------------EIPLKNECELRNLRFLLLWSNRLVGQVPQALANSS 225 (983)
Q Consensus 191 ---------------------------------------------~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 225 (983)
.+|...+..+++|++|+|++|++++.+|..|++++
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 22222111124444444444444444555555555
Q ss_pred CcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCC-CccEEEccCCcccccCCccccc
Q 042568 226 KLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSS-NFQELELAGNNLGGMIPSIIGD 304 (983)
Q Consensus 226 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~ 304 (983)
+|++|+|++|+++|.+|...+..+++|++|+|++|++.. .++..+.+++ +|++|++++|++++.+|..+..
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~--------~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--------ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE--------CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc--------cccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 555555555555555555445555555555555555432 1223333444 5666666666666655555544
Q ss_pred c-ccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcE
Q 042568 305 L-STNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGL 383 (983)
Q Consensus 305 l-~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 383 (983)
. .++|++|++++|.+++.+|..+.++++|++|+|++|++++.+|..++.+++|++|++++|.+.+.+|..+..+++|+.
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 1 246777777777777778888888888888888888888888888888888888888888888888888888888888
Q ss_pred EEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCC
Q 042568 384 LDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNH 463 (983)
Q Consensus 384 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~ 463 (983)
|+|++|++++.+|..+.++++|+.|++++|++++.+|.+++.+++|++|+|++|+++|.+|..+..+++|+. |++++|+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~-L~Ls~N~ 549 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW-LDLNTNL 549 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE-EECCSSE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE-EECCCCc
Confidence 888888888888888888888888888888888888888888888888888888888888888888888885 8888888
Q ss_pred CCCCCcccc----------------------------------------------------------------------c
Q 042568 464 LDGPLPLEL----------------------------------------------------------------------S 473 (983)
Q Consensus 464 l~~~~p~~~----------------------------------------------------------------------~ 473 (983)
++|.+|.++ .
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 887777544 3
Q ss_pred cccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceE
Q 042568 474 KMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQL 553 (983)
Q Consensus 474 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l 553 (983)
.+++|+.|||++|+++|.+|..|+.+++|+.|+|++|+++|.+|.+++.+++|+.|||++|+++|.+|..+.++++|++|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccccccCCCCCCcccccccccCCcCccCCCCCcccccCCCC
Q 042568 554 NFSFNKFSGNISNKGAFSSLTIASFQGNDGLCGEIKGLQTCKKEHT 599 (983)
Q Consensus 554 ~l~~N~l~~~~~~~~~~~~~~~~~~~~N~~lc~~~~~~~~c~~~~~ 599 (983)
++++|+++|.+|..++|.+++..+|.|||++||.|. .+|.....
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l--~~C~~~~~ 753 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL--PRCDPSNA 753 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS--CCCCSCC-
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC--cCCCCCcc
Confidence 999999999999999999999999999999999884 47865543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-59 Score=581.34 Aligned_cols=468 Identities=36% Similarity=0.551 Sum_probs=409.4
Q ss_pred eEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEecc
Q 042568 78 KVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLG 157 (983)
Q Consensus 78 ~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls 157 (983)
+++.|+|++|.+.+.+|. ++++++|++|+|++|.+++.+|..++++++|++|+|++|.+++.+|.. .+++|++|+|+
T Consensus 201 ~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~ 277 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277 (768)
T ss_dssp TCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECC
T ss_pred cCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECc
Confidence 577777777777776666 777888888888888887777777888888888888888877777664 77788888888
Q ss_pred CcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchh-hhccCCcceecccccc
Q 042568 158 NNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQA-LANSSKLEWLDLESNM 236 (983)
Q Consensus 158 ~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~ 236 (983)
+|+++|.+|..++ ..+++|++|+|++|.+++.+|. .+..+++|++|+|++|+++|.+|.. ++++++|++|+|++|+
T Consensus 278 ~n~l~~~ip~~~~--~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 278 ENKFTGEIPDFLS--GACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp SSEEEESCCCCSC--TTCTTCSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred CCccCCccCHHHH--hhcCcCCEEECcCCcCCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 8888888888775 2359999999999999987774 5678999999999999999888876 9999999999999999
Q ss_pred cccccchhhhcCCC-CccEEEccccccccCCCCCCCcccccccCC--CCCccEEEccCCcccccCCccccccccCeeEEE
Q 042568 237 FSGELPSEIISKMP-QLQFLYLSYNDFVSHDGNTNLEPFFASLAN--SSNFQELELAGNNLGGMIPSIIGDLSTNLVQIH 313 (983)
Q Consensus 237 l~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~ 313 (983)
++|.+|..+ ..++ +|++|+|++|++... .+..+.. +++|++|++++|++++.+|..+..+ ++|++|+
T Consensus 355 l~~~~p~~l-~~l~~~L~~L~Ls~N~l~~~--------~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~ 424 (768)
T 3rgz_A 355 FSGELPESL-TNLSASLLTLDLSSNNFSGP--------ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLH 424 (768)
T ss_dssp EEECCCTTH-HHHTTTCSEEECCSSEEEEE--------CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEE
T ss_pred cCccccHHH-HhhhcCCcEEEccCCCcCCC--------cChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEE
Confidence 998888775 4455 999999999998642 2233444 7889999999999999999999888 5799999
Q ss_pred ccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccC
Q 042568 314 LDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSG 393 (983)
Q Consensus 314 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 393 (983)
|++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|+|++|.+++.+|..++++++|+.|+|++|++++
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCcccc-------------------------
Q 042568 394 SIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVA------------------------- 448 (983)
Q Consensus 394 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~------------------------- 448 (983)
.+|..++.+++|+.|+|++|++++.+|..++.+++|+.|++++|+++|.+|..+.
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999988886543
Q ss_pred ---------------------------------------------CCCccceeccccCCCCCCCCccccccccccccccc
Q 042568 449 ---------------------------------------------GLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDL 483 (983)
Q Consensus 449 ---------------------------------------------~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~L 483 (983)
.+++|+. |+|++|+++|.+|.+++.++.|+.|+|
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~-LdLs~N~l~g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF-LDMSYNMLSGYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE-EECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE-EECcCCcccccCCHHHhccccCCEEeC
Confidence 2456775 999999999999999999999999999
Q ss_pred cccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCc-ccc
Q 042568 484 SFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNK-FSG 562 (983)
Q Consensus 484 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~-l~~ 562 (983)
++|+++|.+|..|+.+++|+.|+|++|+++|.+|..++.+++|+.||+++|+++|.||.. ..+.++....+.+|+ ++|
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 999999999999999999999999999999999999999999999999999999999964 345556666778885 666
Q ss_pred c
Q 042568 563 N 563 (983)
Q Consensus 563 ~ 563 (983)
.
T Consensus 743 ~ 743 (768)
T 3rgz_A 743 Y 743 (768)
T ss_dssp T
T ss_pred C
Confidence 4
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.8e-58 Score=555.87 Aligned_cols=487 Identities=20% Similarity=0.296 Sum_probs=353.7
Q ss_pred cccHHhHHHHHHHHHhccCCCcc-------ccCCCCCCCCCCcce---eeEEECCCCCeEEEEEcccCCccccccccccc
Q 042568 30 DQIIRDRASLVTFMSSIISAPEH-------ALESWNSTDVHVCNW---SGVKCNNSRNKVVELDLSARSIYGTISPALAN 99 (983)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~-------~l~sw~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~ 99 (983)
.....|++||.+|+.++..+... ...+|+. +.+||.| .||+|+.. +||+.|+|+++++.|.+|+++++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGG
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhc
Confidence 44567999999999998644322 2348986 5789999 99999865 89999999999999999999999
Q ss_pred CCCCcEEeCcCCcC------CC------CCccccCCCCCCCEEeccCccCCCCchhhhcc-cccccEEecc---------
Q 042568 100 LSSLIVLDLSKNFF------QG------HIPAELGSLIRLKQLSLSWNSLQGKIPSQLGS-LHQLEYLDLG--------- 157 (983)
Q Consensus 100 l~~L~~L~Ls~n~l------~~------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-L~~L~~L~Ls--------- 157 (983)
|++|++|||++|.+ .| .+|... +.+|+ ++++.|.+.+.+|..++. +..+..+++.
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 99999999999976 33 455544 56788 999999999988888774 3344444444
Q ss_pred -----------CcccccccCCcccccCCCcccceeecccccccCC-----------------CCCcccc--cccccceee
Q 042568 158 -----------NNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGE-----------------IPLKNEC--ELRNLRFLL 207 (983)
Q Consensus 158 -----------~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------ip~~~~~--~l~~L~~L~ 207 (983)
.|+++| +|..++ ++++|++|+|++|.+++. +|.. +. ++++|++|+
T Consensus 181 ~~l~~l~l~~~~n~l~~-ip~~l~---~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~ 255 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF-VSKAVM---RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVE 255 (636)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGG---GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEE
T ss_pred cchhhhhhccccCCCcc-CCHHHh---cccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEE
Confidence 455554 555443 455555555555555543 4422 22 455555555
Q ss_pred cccCccccccchhhhccCCcceecccccc-ccc-ccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCcc
Q 042568 208 LWSNRLVGQVPQALANSSKLEWLDLESNM-FSG-ELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQ 285 (983)
Q Consensus 208 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~ 285 (983)
|++|++.+.+|..|+++++|++|+|++|+ ++| .+|..+. .+ ..+..+++|+
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L--------------------------~~~~~l~~L~ 308 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ-AL--------------------------ADAPVGEKIQ 308 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HH--------------------------HHSGGGGTCC
T ss_pred ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH-hh--------------------------hccccCCCCC
Confidence 55555555555555555555555555554 554 4444321 11 0112236666
Q ss_pred EEEccCCcccccCCc--cccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCC-CcEEEe
Q 042568 286 ELELAGNNLGGMIPS--IIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSK-LERVYL 362 (983)
Q Consensus 286 ~L~L~~n~l~~~~p~--~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L 362 (983)
+|++++|+++ .+|. .++.+ ++|++|++++|.++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++
T Consensus 309 ~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 309 IIYIGYNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSF 384 (636)
T ss_dssp EEECCSSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEEC
T ss_pred EEECCCCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEc
Confidence 7777777776 5666 66666 467777777777777777 7777788888888888887 67777777877 888888
Q ss_pred eCCcccCCCCCCCCCCC--CCcEEEccCccccCcCccccc-------CcccchhhcccCccCCCCCcccccCCCCCCEEE
Q 042568 363 SNNSLSGEIPSAFGDIP--HLGLLDLSKNKLSGSIPDSFA-------NLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILD 433 (983)
Q Consensus 363 ~~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~ 433 (983)
++|.++ .+|..+..++ +|+.|+|++|++++.+|..|. .+++|+.|+|++|.+++..+..+..+++|+.|+
T Consensus 385 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 385 AHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463 (636)
T ss_dssp CSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEE
T ss_pred cCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEE
Confidence 888887 6677776654 788888888888888887777 777888888888888843334455688888888
Q ss_pred ccCccccCcCCccc-cCCC-------ccceeccccCCCCCCCCccccc--cccccccccccccccccCCCcccccccccc
Q 042568 434 LSHNKISGIIPSDV-AGLR-------SLKLYLNLSSNHLDGPLPLELS--KMDMVLAIDLSFNNLSGSIPPQLGSCIALE 503 (983)
Q Consensus 434 Ls~N~l~~~~p~~~-~~l~-------~L~~~L~l~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 503 (983)
|++|+++ .+|..+ .... +|+. |+|++|+++ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+
T Consensus 464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~-L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 464 LMGNMLT-EIPKNSLKDENENFKNTYLLTS-IDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp CCSSCCS-BCCSSSSEETTEECTTGGGCCE-EECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred CCCCCCC-CcCHHHhccccccccccCCccE-EECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 8888888 455433 3222 7775 888888888 6777776 88888888888888886 888888888899
Q ss_pred eEEe------CCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccC
Q 042568 504 SLNL------SGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNIS 565 (983)
Q Consensus 504 ~L~L------s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 565 (983)
.|+| ++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++.....
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccH
Confidence 9988 56888889999999999999999999999 68888766 799999999998876543
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.1e-56 Score=537.05 Aligned_cols=509 Identities=20% Similarity=0.206 Sum_probs=444.6
Q ss_pred eeeEEECCC---------CCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccC
Q 042568 67 WSGVKCNNS---------RNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSL 137 (983)
Q Consensus 67 w~gv~c~~~---------~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 137 (983)
+..|.|... ...++.|+|++|.+++..|.+++++++|++|+|++|.+++..|..|+++++|++|+|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 456888653 24799999999999988889999999999999999999988899999999999999999999
Q ss_pred CCCchhhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCcccccc
Q 042568 138 QGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQV 217 (983)
Q Consensus 138 ~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~ 217 (983)
++..|..|+++++|++|+|++|++++..|..+ ..+++|++|++++|.+++.. ...+..+++|++|++++|++++..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~---~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPL---HNQKTLESLYLGSNHISSIK-LPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCC---TTCTTCCEEECCSSCCCCCC-CCTTCCCTTCCEEECCSSCCCEEC
T ss_pred cccChhhhcccccccEeeccccCcccCCcchh---ccCCcccEEECCCCcccccC-cccccCCcccCEEEcccCcccccC
Confidence 98889999999999999999999996545555 48999999999999999632 223345999999999999999999
Q ss_pred chhhhccCCcc--eecccccccccccchhhhcCCCCccEEEccccccc---------------------cCCCCCCCccc
Q 042568 218 PQALANSSKLE--WLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFV---------------------SHDGNTNLEPF 274 (983)
Q Consensus 218 p~~l~~l~~L~--~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~---------------------~~~~~~~~~~~ 274 (983)
|..|+.+++|+ +|++++|++++. +...+. ..+|++|++++|... .......-...
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~-~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGI-EPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEE-CTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhhhhcccceeEEecCCCccCcc-ChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhH
Confidence 99999999999 899999999954 444444 468999999987510 00000000111
Q ss_pred ccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccC
Q 042568 275 FASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLM 354 (983)
Q Consensus 275 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 354 (983)
+..+... +|++|++++|++++..+..+..+ ++|++|++++|.++ .+|..+..+++|++|++++|++++..|..+..+
T Consensus 248 ~~~l~~~-~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 248 FEGLCEM-SVESINLQKHYFFNISSNTFHCF-SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp GGGGGGS-EEEEEECTTCCCSSCCTTTTTTC-TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred hchhhcC-ceeEEEeecCccCccCHHHhccc-cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 2222222 79999999999998888778887 58999999999998 789999999999999999999998888899999
Q ss_pred CCCcEEEeeCCcccCCCCC-CCCCCCCCcEEEccCccccCcC--cccccCcccchhhcccCccCCCCCcccccCCCCCCE
Q 042568 355 SKLERVYLSNNSLSGEIPS-AFGDIPHLGLLDLSKNKLSGSI--PDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEI 431 (983)
Q Consensus 355 ~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~ 431 (983)
++|++|++++|.+.+.+|. .+..+++|+.|++++|++++.. +..+..+++|+.|++++|.+++..|..|..+++|+.
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 9999999999999976665 4999999999999999999776 788999999999999999999888999999999999
Q ss_pred EEccCccccCcCCcc-ccCCCccceeccccCCCCCCCCccccccccccccccccccccccC---CCcccccccccceEEe
Q 042568 432 LDLSHNKISGIIPSD-VAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGS---IPPQLGSCIALESLNL 507 (983)
Q Consensus 432 L~Ls~N~l~~~~p~~-~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~L 507 (983)
|++++|++++..|.. +..+++|+. |++++|.+++..|..+..+++|++|+|++|++++. .+..+..+++|+.|++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKV-LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCE-EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred EECCCCcCCCcccchhhhCcccCCE-EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 999999999877654 889999996 99999999999999999999999999999999873 3467899999999999
Q ss_pred CCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCC-CCCCcccccccccCCcCccC
Q 042568 508 SGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISN-KGAFSSLTIASFQGNDGLCG 586 (983)
Q Consensus 508 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~N~~lc~ 586 (983)
++|++++..|..+..+++|+.|+|++|++++..|..|.+++.| +|++++|++++.+|. ...+..+..+.+.+||+.|.
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred CCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 9999999999999999999999999999999999999999999 999999999998876 35677888999999999985
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-56 Score=550.37 Aligned_cols=492 Identities=21% Similarity=0.282 Sum_probs=308.1
Q ss_pred ccccHHhHHHHHHHHHhccCCCccccCCCCCCC----CCC--cce------------eeEEECCCCCeEEEEEcccCCcc
Q 042568 29 DDQIIRDRASLVTFMSSIISAPEHALESWNSTD----VHV--CNW------------SGVKCNNSRNKVVELDLSARSIY 90 (983)
Q Consensus 29 ~~~~~~~~~~ll~~k~~~~~~~~~~l~sw~~~~----~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~l~ 90 (983)
+.+..+|++||++||+++. +| +|+.++ .+| |.| .||+|+. .+||+.|+|+++++.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred cccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 3456789999999999994 55 787543 344 999 9999987 689999999999999
Q ss_pred cccccccccCCCCcEEeC-cCCcCCCCCcccc------------------------------------------------
Q 042568 91 GTISPALANLSSLIVLDL-SKNFFQGHIPAEL------------------------------------------------ 121 (983)
Q Consensus 91 g~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~~------------------------------------------------ 121 (983)
|.+|+++++|++|++||| ++|.++|..|-..
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 8898877644221
Q ss_pred ---CCCCCCCEEeccC--ccCCCCchhhhcccccccEEeccCcccccc-cCCcccccCCCcccceeecccccccCCCCCc
Q 042568 122 ---GSLIRLKQLSLSW--NSLQGKIPSQLGSLHQLEYLDLGNNKLVGE-IPIPIFCSNSSTSLQYIDLSNNSLTGEIPLK 195 (983)
Q Consensus 122 ---~~l~~L~~L~Ls~--n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~-~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~ 195 (983)
.....++.+.++. |++++ +|..|++|++|++|+|++|+++|. +|.... .++.|.++|.+|..
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~-----------~~s~n~~~g~iP~~ 484 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE-----------DANSDYAKQYENEE 484 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS-----------CTTSHHHHHHTTSC
T ss_pred cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccc-----------ccccccccccCChh
Confidence 1122334444433 67775 777777777777777777777762 111110 01112222234433
Q ss_pred c-cccccccceeecccCccccccchhhhccCCcceecccccc-ccc-ccchhh------hcCCCCccEEEccccccccCC
Q 042568 196 N-ECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNM-FSG-ELPSEI------ISKMPQLQFLYLSYNDFVSHD 266 (983)
Q Consensus 196 ~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~~~~~~------~~~l~~L~~L~Ls~N~l~~~~ 266 (983)
. |.++++|++|+|++|++.+.+|..|+++++|++|+|++|+ ++| .+|..+ +..+++|++|+|++|++..
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-- 562 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-- 562 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB--
T ss_pred hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc--
Confidence 2 2355555555555555555555555556666666666655 554 455432 1223356666666665532
Q ss_pred CCCCCccccc--ccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCc-ccEEecccccc
Q 042568 267 GNTNLEPFFA--SLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVN-LTLLNLSSNLL 343 (983)
Q Consensus 267 ~~~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l 343 (983)
++. .+.++++|++|+|++|+++ .+| .++.+ ++|+.|+|++|.++ .+|..+..+++ |++|+|++|++
T Consensus 563 -------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 563 -------FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp -------CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred -------cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence 223 4555666666666666666 555 55554 35666666666666 66666666666 77777777776
Q ss_pred CCCCCcccccCCC--CcEEEeeCCcccCCCCCCC---C--CCCCCcEEEccCccccCcCcccccCcccchhhcccCccCC
Q 042568 344 NGTIPHELCLMSK--LERVYLSNNSLSGEIPSAF---G--DIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLS 416 (983)
Q Consensus 344 ~~~~p~~l~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (983)
+ .+|..+..++. |+.|+|++|.+.+.+|... . .+++|+.|+|++|+++...+..+..+++|+.|+|++|+++
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 6 55666655543 7777777777766554322 2 2346777777777777332333346777777777777777
Q ss_pred CCCcccccCC--------CCCCEEEccCccccCcCCcccc--CCCccceeccccCCCCCCCCccccccccccccccccc-
Q 042568 417 GTIPSSLGKC--------VNLEILDLSHNKISGIIPSDVA--GLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSF- 485 (983)
Q Consensus 417 ~~~p~~l~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~- 485 (983)
.+|..+... ++|+.|+|++|+++ .+|..+. .+++|+. |+|++|++++ +|..+..+++|+.|+|++
T Consensus 711 -~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~-L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 711 -SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSN-MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp -CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCE-EECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred -ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCE-EEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence 455443332 27777777777777 5666665 7777775 7777777776 677777777777777766
Q ss_pred -----cccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCcc
Q 042568 486 -----NNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKF 560 (983)
Q Consensus 486 -----N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l 560 (983)
|++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|||++|++...-+..+.....+..+.|.+|++
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 556666666666666666666666666 45555544 4566666666666544444444444444445554443
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.6e-54 Score=529.98 Aligned_cols=508 Identities=24% Similarity=0.240 Sum_probs=359.6
Q ss_pred cceeeEEECCC---------CCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCc
Q 042568 65 CNWSGVKCNNS---------RNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWN 135 (983)
Q Consensus 65 c~w~gv~c~~~---------~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 135 (983)
|.+.-|.|+.. ..+++.|+|+++.+.+..+..++++++|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 55566677542 247999999999999877788999999999999999999888999999999999999999
Q ss_pred cCCCCchhhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCcccc
Q 042568 136 SLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVG 215 (983)
Q Consensus 136 ~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~ 215 (983)
++++..+..|+++++|++|+|++|++++..|..+ ..+++|++|+|++|.+++..| ..+..+++|++|++++|++++
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF---VKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTT---TTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCC
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHc---cccCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcccc
Confidence 9996555679999999999999999985444544 478999999999999986544 556789999999999999998
Q ss_pred ccchhhh--ccCCcceecccccccccccchhhhcCCC---------------------------CccEEEccccccccCC
Q 042568 216 QVPQALA--NSSKLEWLDLESNMFSGELPSEIISKMP---------------------------QLQFLYLSYNDFVSHD 266 (983)
Q Consensus 216 ~~p~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~---------------------------~L~~L~Ls~N~l~~~~ 266 (983)
..+..+. .+++|++|++++|++++.. ...+..++ +|++|++++|.+....
T Consensus 160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 160 LKSEELDIFANSSLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp BCHHHHGGGTTCEESEEECTTCCCCCBC-TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred cCHHHhhccccccccEEECCCCcccccC-hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence 8887765 4588999999999988543 33344443 3444445544443321
Q ss_pred CCCCCcccccccCCC--CCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCC------------------
Q 042568 267 GNTNLEPFFASLANS--SNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPH------------------ 326 (983)
Q Consensus 267 ~~~~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~------------------ 326 (983)
. ..+..+ ++|++|++++|++++..|..+..+ ++|++|++++|.+.+..|..
T Consensus 239 ~--------~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 239 N--------TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp T--------TTTGGGGGSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred h--------hHhhccCcCCCCEEECCCCCcCccCcccccCc-ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence 1 112222 224555555555544444444444 24455555555444443333
Q ss_pred ---------------CCCCCcccEEeccccccCCCCCcccccCCCCcEEEe----------------------------e
Q 042568 327 ---------------ISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYL----------------------------S 363 (983)
Q Consensus 327 ---------------l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L----------------------------~ 363 (983)
+..+++|++|++++|++++..+..+..+++|++|++ +
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~ 389 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred cccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence 333444444444445554444444444444433333 3
Q ss_pred CCcccCCCCCCCCCCCCCcEEEccCccccCcCc-ccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCcccc--
Q 042568 364 NNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIP-DSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKIS-- 440 (983)
Q Consensus 364 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-- 440 (983)
+|.+++..|..|..+++|+.|+|++|++++.+| ..|.++++|+.|++++|++++..+..|..+++|+.|++++|.++
T Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 444444555556666666666666666655443 45666666666666666666555666666666666666666665
Q ss_pred CcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCC--------CcccccccccceEEeCCCcc
Q 042568 441 GIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSI--------PPQLGSCIALESLNLSGNSL 512 (983)
Q Consensus 441 ~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--------p~~~~~l~~L~~L~Ls~N~l 512 (983)
+.+|..+..+++|+. |++++|++++..|..|.++++|++|+|++|++++.. +..|..+++|+.|+|++|++
T Consensus 470 ~~~p~~~~~l~~L~~-L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTI-LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TCSSCTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred ccCCcccccCCCCCE-EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 467778888888886 999999998877888888999999999999888542 12377888999999999999
Q ss_pred cccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCCC-C-CCcccccccccCCcCccCC
Q 042568 513 EGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISNK-G-AFSSLTIASFQGNDGLCGE 587 (983)
Q Consensus 513 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~-~~~~~~~~~~~~N~~lc~~ 587 (983)
+...+..|..+++|+.|+|++|++++..+..|.++++|+.|++++|++++.++.. . .+..+..+.+.+|||.|.-
T Consensus 549 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 8655567899999999999999999666677889999999999999999877652 2 4677888899999999963
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-54 Score=524.74 Aligned_cols=502 Identities=22% Similarity=0.201 Sum_probs=434.3
Q ss_pred CCccee----eEEECCC---------CCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCE
Q 042568 63 HVCNWS----GVKCNNS---------RNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQ 129 (983)
Q Consensus 63 ~~c~w~----gv~c~~~---------~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (983)
++|.|. .|.|+.. ..+++.|+|+++.+.+..+..+.++++|++|+|++|.+++..|..|+++++|++
T Consensus 5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence 456653 5778652 357999999999999888889999999999999999999888889999999999
Q ss_pred EeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccC-CCCCcccccccccceeec
Q 042568 130 LSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTG-EIPLKNECELRNLRFLLL 208 (983)
Q Consensus 130 L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~L 208 (983)
|+|++|.+++..|..|+++++|++|+|++|++++..|..+ ..+++|++|++++|.+++ .+| ..+.++++|++|++
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI---GQLITLKKLNVAHNFIHSCKLP-AYFSNLTNLVHVDL 160 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC---TTCTTCCEEECCSSCCCCCCCC-GGGGTCTTCCEEEC
T ss_pred eECCCCcccccChhhcCCcccCCEEEccCCcccccccccc---CCCCCCCEEeCCCCcccceech-HhHhhcCCCCEEEc
Confidence 9999999998889999999999999999999985554555 489999999999999986 455 46779999999999
Q ss_pred ccCccccccchhhhccCCcc----eecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCC-
Q 042568 209 WSNRLVGQVPQALANSSKLE----WLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSN- 283 (983)
Q Consensus 209 ~~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~- 283 (983)
++|++++..|..|+.+++|+ +|++++|+++ .++...+... +|++|++++|.+.. ...+..+.++++
T Consensus 161 s~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~-------~~~~~~~~~l~~L 231 (606)
T 3vq2_A 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSS-------NIMKTCLQNLAGL 231 (606)
T ss_dssp CSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCH-------HHHHHHHHTTTTC
T ss_pred cCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccch-------hHHHHHhcccccc
Confidence 99999999999898887776 8999999998 6777776655 89999999997642 011222333333
Q ss_pred -------------------------------ccEEEc-cCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCC
Q 042568 284 -------------------------------FQELEL-AGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLV 331 (983)
Q Consensus 284 -------------------------------L~~L~L-~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~ 331 (983)
++.+++ ..|.+.+.+|. +..+ ++|+.|++++|.+. .+| .+..++
T Consensus 232 ~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l-~~L~~L~l~~~~~~-~l~-~l~~~~ 307 (606)
T 3vq2_A 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCL-ANVSAMSLAGVSIK-YLE-DVPKHF 307 (606)
T ss_dssp EEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGG-TTCSEEEEESCCCC-CCC-CCCTTC
T ss_pred ccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccC-CCCCEEEecCccch-hhh-hccccc
Confidence 444555 67778877777 5555 58999999999996 566 899999
Q ss_pred cccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCc--CcccccCcccchhhc
Q 042568 332 NLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGS--IPDSFANLSQLRRLL 409 (983)
Q Consensus 332 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~ 409 (983)
+|++|++++|++ +.+| .+ .+++|++|++++|...+.. .+..+++|+.|++++|++++. .|..+..+++|+.|+
T Consensus 308 ~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp CCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred cCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence 999999999999 5788 45 9999999999999665444 678999999999999999876 388899999999999
Q ss_pred ccCccCCCCCcccccCCCCCCEEEccCccccCcCC-ccccCCCccceeccccCCCCCCCCcccccccccccccccccccc
Q 042568 410 LYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIP-SDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNL 488 (983)
Q Consensus 410 l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 488 (983)
+++|.+++ +|..+..+++|+.|++++|++++..| ..+..+++|+. |++++|.+++..|..+..+++|+.|+|++|++
T Consensus 383 L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 383 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY-LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp CCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE-EECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE-EECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 99999984 67889999999999999999998888 68899999996 99999999999999999999999999999999
Q ss_pred cc-CCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCCC
Q 042568 489 SG-SIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISNK 567 (983)
Q Consensus 489 ~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~ 567 (983)
++ .+|..|+.+++|+.|+|++|++++..|..+..+++|+.|++++|++++.+|..|.++++|++|++++|+++..++..
T Consensus 461 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~ 540 (606)
T 3vq2_A 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540 (606)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCG
T ss_pred CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhH
Confidence 98 47889999999999999999999999999999999999999999999999999999999999999999999777666
Q ss_pred CCCc-ccccccccCCcCccCCC
Q 042568 568 GAFS-SLTIASFQGNDGLCGEI 588 (983)
Q Consensus 568 ~~~~-~~~~~~~~~N~~lc~~~ 588 (983)
..+. .+..+.+.+||+.|.-+
T Consensus 541 ~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 541 QHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp GGSCTTCCEEECCSCCCCCSST
T ss_pred hhhcccCcEEEccCCCcccCCc
Confidence 6665 48888999999999644
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.8e-54 Score=535.38 Aligned_cols=502 Identities=22% Similarity=0.218 Sum_probs=387.1
Q ss_pred cceeeEEECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCC-ccccCCCCCCCEEeccCccCCCCchh
Q 042568 65 CNWSGVKCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHI-PAELGSLIRLKQLSLSWNSLQGKIPS 143 (983)
Q Consensus 65 c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~ 143 (983)
|.|..|-+ ...+++.|||++|.+++..+..+.++++|++|||++|.+.+.+ |..|+++++|++|+|++|.|++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 56777776 3467999999999999988999999999999999999777676 78899999999999999999988899
Q ss_pred hhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhc
Q 042568 144 QLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALAN 223 (983)
Q Consensus 144 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 223 (983)
.|+++++|++|+|++|.+++.+|... .+..+++|++|+|++|.+++..+...+.++++|++|+|++|.+++..|..+..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDG-YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTC-CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCc-cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 99999999999999999998776541 12589999999999999998777778899999999999999999999999998
Q ss_pred c--CCcceecccccccccccchhhhcCCC------CccEEEccccccccCCCCCCC--------c---------------
Q 042568 224 S--SKLEWLDLESNMFSGELPSEIISKMP------QLQFLYLSYNDFVSHDGNTNL--------E--------------- 272 (983)
Q Consensus 224 l--~~L~~L~Ls~N~l~~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~--------~--------------- 272 (983)
+ ++|+.|+|++|.+++..|..+ ..++ .|++|+|++|.+......... .
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred ccCCccceEECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 8 899999999999997776543 3344 499999999976532110000 0
Q ss_pred -----ccccccCC--CCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCC
Q 042568 273 -----PFFASLAN--SSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNG 345 (983)
Q Consensus 273 -----~~~~~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 345 (983)
.....+.. .++|++|++++|.+.+..|..+..+ ++|+.|+|++|.+++..|..|..+++|++|+|++|++++
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence 00011222 2678888888888888777777776 478888888888888888888888888888888888887
Q ss_pred CCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccC
Q 042568 346 TIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGK 425 (983)
Q Consensus 346 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~ 425 (983)
..|..+..+++|+.|++++|.+.+..+..|..+++|+.|+|++|.+++. ..+++|+.|++++|+++ .+|..
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~--- 399 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI--- 399 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---
T ss_pred cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---
Confidence 7788888888888888888888887777888888888888888888742 23677788888888877 45543
Q ss_pred CCCCCEEEccCccccCcCC-ccccCCCccceeccccCCCCCCCCcc-ccccccccccccccccccc-----cCCCccccc
Q 042568 426 CVNLEILDLSHNKISGIIP-SDVAGLRSLKLYLNLSSNHLDGPLPL-ELSKMDMVLAIDLSFNNLS-----GSIPPQLGS 498 (983)
Q Consensus 426 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~~L~l~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~ 498 (983)
..+++.|++++|++++... ..+..+++|+. |+|++|++++..+. .+..+++|+.|+|++|.++ +..|..|..
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 478 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQI-LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCE-EEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred ccccceeecccCccccCchhhhhhcCCccce-eeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC
Confidence 3456677777777764321 22446677775 77777777754433 3455677777777777776 334455667
Q ss_pred ccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCCCCCCcccccccc
Q 042568 499 CIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISNKGAFSSLTIASF 578 (983)
Q Consensus 499 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~ 578 (983)
+++|+.|+|++|+|++.+|..+..+++|+.|+|++|+|++..|..+. ++|+.|++++|++++.+|. .+..+..+++
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l 554 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDI 554 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEE
T ss_pred cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEe
Confidence 77777777777777777777777777777777777777765555554 6777777777777777764 3556667777
Q ss_pred cCCcCcc
Q 042568 579 QGNDGLC 585 (983)
Q Consensus 579 ~~N~~lc 585 (983)
.+||+.|
T Consensus 555 ~~Np~~C 561 (844)
T 3j0a_A 555 THNKFIC 561 (844)
T ss_dssp EEECCCC
T ss_pred cCCCccc
Confidence 7777777
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-52 Score=504.55 Aligned_cols=473 Identities=22% Similarity=0.220 Sum_probs=420.3
Q ss_pred CeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEec
Q 042568 77 NKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDL 156 (983)
Q Consensus 77 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~L 156 (983)
.+++.|+|++|.+.+..|.+++++++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++|+|
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 46999999999999888999999999999999999999888999999999999999999999777899999999999999
Q ss_pred cCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccc--eeecccCccccccchhhhccCCcceecccc
Q 042568 157 GNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLR--FLLLWSNRLVGQVPQALANSSKLEWLDLES 234 (983)
Q Consensus 157 s~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~--~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 234 (983)
++|++++..+..+. .+++|++|++++|.+++ ++...+..+++|+ .|++++|++++..|..+.. .+|++|++++
T Consensus 137 ~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~ 211 (606)
T 3t6q_A 137 GSNHISSIKLPKGF---PTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGG 211 (606)
T ss_dssp CSSCCCCCCCCTTC---CCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCcccccCccccc---CCcccCEEEcccCcccc-cChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCC
Confidence 99999853222232 48999999999999984 4446677899999 8999999999888887665 6899999988
Q ss_pred cccc-------------------------cccchhhhcCCC--CccEEEccccccccCCCCCCCcccccccCCCCCccEE
Q 042568 235 NMFS-------------------------GELPSEIISKMP--QLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQEL 287 (983)
Q Consensus 235 N~l~-------------------------~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L 287 (983)
|... ..++...+..+. +|++|++++|.+..+.. ..+..+++|++|
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L 283 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS--------NTFHCFSGLQEL 283 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT--------TTTTTCTTCSEE
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH--------HHhccccCCCEE
Confidence 7511 022233333333 79999999999876442 347889999999
Q ss_pred EccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcc-cccCCCCcEEEeeCCc
Q 042568 288 ELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHE-LCLMSKLERVYLSNNS 366 (983)
Q Consensus 288 ~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~ 366 (983)
++++|+++ .+|..+..+ ++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.
T Consensus 284 ~l~~n~l~-~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 284 DLTATHLS-ELPSGLVGL-STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp ECTTSCCS-CCCSSCCSC-TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred eccCCccC-CCChhhccc-ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 99999998 678888887 58999999999999888999999999999999999998776654 8999999999999999
Q ss_pred ccCCC--CCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCccc-ccCCCCCCEEEccCccccCcC
Q 042568 367 LSGEI--PSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSS-LGKCVNLEILDLSHNKISGII 443 (983)
Q Consensus 367 l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~ 443 (983)
+.+.. |..+..+++|+.|++++|++.+..|..|..+++|+.|++++|++++..|.. +..+++|+.|++++|++++..
T Consensus 362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence 99876 888999999999999999999999999999999999999999999776654 899999999999999999999
Q ss_pred CccccCCCccceeccccCCCCCC---CCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccc
Q 042568 444 PSDVAGLRSLKLYLNLSSNHLDG---PLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSV 520 (983)
Q Consensus 444 p~~~~~l~~L~~~L~l~~N~l~~---~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 520 (983)
|..+..+++|+. |++++|++++ ..+..+..+++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..|..+
T Consensus 442 ~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 442 EQLFDGLPALQH-LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp TTTTTTCTTCCE-EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred HHHHhCCCCCCE-EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh
Confidence 999999999996 9999999987 334679999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCC
Q 042568 521 GQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISN 566 (983)
Q Consensus 521 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 566 (983)
..+++| .|++++|++++..|..+..+++|+.|++++|++++..+.
T Consensus 521 ~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 521 SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred Cccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999 999999999998899999999999999999999987653
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.9e-51 Score=500.82 Aligned_cols=489 Identities=22% Similarity=0.229 Sum_probs=330.1
Q ss_pred EEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCc
Q 042568 80 VELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNN 159 (983)
Q Consensus 80 ~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N 159 (983)
..+|.++++++ .+|..+. ++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 35889999887 6777664 79999999999999877788999999999999999999999999999999999999999
Q ss_pred ccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceeccccccccc
Q 042568 160 KLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSG 239 (983)
Q Consensus 160 ~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 239 (983)
+++ .+|...+ ..+++|++|+|++|.++ .++...+..+++|++|+|++|.+++..|..++++++|++|++++|++++
T Consensus 84 ~l~-~l~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 84 ELS-QLSDKTF--AFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CCC-CCCTTTT--TTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred ccC-ccChhhh--ccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 998 5665432 48999999999999998 5666678899999999999999999999999999999999999999985
Q ss_pred ccchhh-hcCCCCccEEEccccccccCCCCCCCcccccccC------------------------CCCCccEEEccCCcc
Q 042568 240 ELPSEI-ISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLA------------------------NSSNFQELELAGNNL 294 (983)
Q Consensus 240 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~------------------------~l~~L~~L~L~~n~l 294 (983)
..+..+ ...+++|++|++++|++....... +..+. ..++|++|++++|++
T Consensus 160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGC-----FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp BCHHHHGGGTTCEESEEECTTCCCCCBCTTG-----GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred cCHHHhhccccccccEEECCCCcccccChhh-----hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 444332 235689999999999887643210 11111 237899999999999
Q ss_pred cccCCccccccc-cCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccC----
Q 042568 295 GGMIPSIIGDLS-TNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSG---- 369 (983)
Q Consensus 295 ~~~~p~~~~~l~-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~---- 369 (983)
++..|..+..+. ++|++|+|++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|...+
T Consensus 235 ~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp CEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred cccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence 999999888775 359999999999999999999999999999999999988777666555555555554443221
Q ss_pred -CCC----CCCCCCCCCcEEEccCccccCcCcccccCcccc----------------------------hhhcccCccCC
Q 042568 370 -EIP----SAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQL----------------------------RRLLLYGNHLS 416 (983)
Q Consensus 370 -~~p----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------------------~~L~l~~N~l~ 416 (983)
.+| ..|..+++|+.|++++|++++..+..|.++++| +.|++++|+++
T Consensus 315 ~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp --CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC
Confidence 111 133344444444444444444333333333333 33333344444
Q ss_pred CCCcccccCCCCCCEEEccCccccCcCC-ccccCCCccceeccccCCCCCCCCcc-------------------------
Q 042568 417 GTIPSSLGKCVNLEILDLSHNKISGIIP-SDVAGLRSLKLYLNLSSNHLDGPLPL------------------------- 470 (983)
Q Consensus 417 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~~L~l~~N~l~~~~p~------------------------- 470 (983)
+..|..|..+++|+.|++++|++++.+| ..+.++++|+. |++++|++++..+.
T Consensus 395 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE-IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCE-EECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccE-EecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence 4445556666666666666666655444 45555666664 66666665544444
Q ss_pred -ccccccccccccccccccccCCCcccccccccceEEeCCCccccccc--------ccccCCCCccEEecCCccccCCcC
Q 042568 471 -ELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLP--------VSVGQLPYLKQFDVSSNRLFGEIP 541 (983)
Q Consensus 471 -~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~ls~N~l~~~~p 541 (983)
.|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+ ..+..+++|+.|+|++|+++...+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 44445555555555555554444444555555555555555543211 124444555555555555542222
Q ss_pred ccccCCCCcceEeccCCccccccCCC-CCCcccccccccCC
Q 042568 542 QSFQASPTLKQLNFSFNKFSGNISNK-GAFSSLTIASFQGN 581 (983)
Q Consensus 542 ~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~~N 581 (983)
..|.++++|+.|++++|++++.++.. ..+..+..+.+.+|
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence 33555555555555555555444332 33344444444444
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.8e-51 Score=494.97 Aligned_cols=474 Identities=23% Similarity=0.181 Sum_probs=416.4
Q ss_pred CeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEec
Q 042568 77 NKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDL 156 (983)
Q Consensus 77 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~L 156 (983)
.+++.|+|++|.+.+..|.+++++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 46999999999999888889999999999999999999888999999999999999999999877789999999999999
Q ss_pred cCccccc-ccCCcccccCCCcccceeecccccccCCCCCcccccccccc----eeecccCccccccchhhhccCCcceec
Q 042568 157 GNNKLVG-EIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLR----FLLLWSNRLVGQVPQALANSSKLEWLD 231 (983)
Q Consensus 157 s~N~l~~-~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~----~L~L~~N~l~~~~p~~l~~l~~L~~L~ 231 (983)
++|++++ .+|..+. .+++|++|++++|.+++ ++...+..+++|+ +|++++|++++..+..+... +|++|+
T Consensus 136 ~~n~l~~~~lp~~~~---~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~ 210 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFS---NLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELT 210 (606)
T ss_dssp CSSCCCCCCCCGGGG---TCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEE
T ss_pred CCCcccceechHhHh---hcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeee
Confidence 9999985 5787765 89999999999999996 4445566676665 89999999997777766655 999999
Q ss_pred ccccccccccchhhhcCCCCccEEEccccccccCC------------------------CCCCCcccccccCCCCCccEE
Q 042568 232 LESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHD------------------------GNTNLEPFFASLANSSNFQEL 287 (983)
Q Consensus 232 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------------------~~~~~~~~~~~l~~l~~L~~L 287 (983)
+++|.+++......+..++.|+.+++..+.+.... ....+......+..+++|++|
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 290 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence 99999986666677889999999888665543211 111122223337788999999
Q ss_pred EccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcc
Q 042568 288 ELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSL 367 (983)
Q Consensus 288 ~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 367 (983)
++++|.+.. +| .+..+ ++|++|++++|.+ +.+| .+ .+++|++|++++|...+.+ .+..+++|++|++++|.+
T Consensus 291 ~l~~~~~~~-l~-~l~~~-~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 291 SLAGVSIKY-LE-DVPKH-FKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp EEESCCCCC-CC-CCCTT-CCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred EecCccchh-hh-hcccc-ccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence 999999974 55 66665 5899999999999 6888 55 9999999999999765444 677899999999999999
Q ss_pred cCC--CCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCc-ccccCCCCCCEEEccCccccCcCC
Q 042568 368 SGE--IPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIP-SSLGKCVNLEILDLSHNKISGIIP 444 (983)
Q Consensus 368 ~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p 444 (983)
++. .|..+..+++|+.|+|++|++++ +|..|..+++|+.|++++|++++..| ..+..+++|+.|++++|++++..|
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred CCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence 976 47889999999999999999985 66889999999999999999998877 689999999999999999999999
Q ss_pred ccccCCCccceeccccCCCCCC-CCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCC
Q 042568 445 SDVAGLRSLKLYLNLSSNHLDG-PLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQL 523 (983)
Q Consensus 445 ~~~~~l~~L~~~L~l~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 523 (983)
..+..+++|+. |++++|++++ .+|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++.+|..+..+
T Consensus 442 ~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 442 GIFLGLTSLNT-LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp TTTTTCTTCCE-EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred hhhcCCCCCCE-EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence 99999999996 9999999998 489999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEecCCccccCCcCccccCCC-CcceEeccCCccccccCC
Q 042568 524 PYLKQFDVSSNRLFGEIPQSFQASP-TLKQLNFSFNKFSGNISN 566 (983)
Q Consensus 524 ~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~l~l~~N~l~~~~~~ 566 (983)
++|+.|++++|+++ .+|..+..++ +|++|++++|++.+..+.
T Consensus 521 ~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 521 YSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99999999999999 7888899997 599999999999987654
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.9e-51 Score=490.04 Aligned_cols=481 Identities=23% Similarity=0.237 Sum_probs=406.4
Q ss_pred CcceeeEEECCCC-----------CeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEec
Q 042568 64 VCNWSGVKCNNSR-----------NKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSL 132 (983)
Q Consensus 64 ~c~w~gv~c~~~~-----------~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 132 (983)
.|.|.|+ |+... .+++.|+|++|.+.+..|.++.++++|++|+|++|++++..|..|+++++|++|+|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4999998 87531 36999999999999888899999999999999999999888899999999999999
Q ss_pred cCccCCCCchhhhcccccccEEeccCccccc-ccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccC
Q 042568 133 SWNSLQGKIPSQLGSLHQLEYLDLGNNKLVG-EIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSN 211 (983)
Q Consensus 133 s~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~-~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N 211 (983)
++|++++..|..|+++++|++|+|++|++++ .+|..+ ..+++|++|++++|.+.+.+|...+..+++|++|++++|
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF---PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC---TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh---hccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 9999998888889999999999999999985 344444 489999999999999777888888899999999999999
Q ss_pred ccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccC
Q 042568 212 RLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAG 291 (983)
Q Consensus 212 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 291 (983)
++++.+|..++++++|++|++++|.+. .+|...+..+++|++|+|++|++....... ......+++|++|++++
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~~~~~~~L~~L~l~~ 232 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP-----LPVDEVSSPMKKLAFRG 232 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC-----CSSCCCCCCCCEEEEES
T ss_pred cccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccc-----cchhhhhhcccceeccc
Confidence 999999999999999999999999986 788877788999999999999987643110 11234578999999999
Q ss_pred CcccccCCccccc---cccCeeEEEccCccccccC------CCCCCCCCcccEEeccccccCCC-----CCcccccCCCC
Q 042568 292 NNLGGMIPSIIGD---LSTNLVQIHLDCNLIYGKI------PPHISNLVNLTLLNLSSNLLNGT-----IPHELCLMSKL 357 (983)
Q Consensus 292 n~l~~~~p~~~~~---l~~~L~~L~L~~N~l~~~~------p~~l~~l~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L 357 (983)
|.+++..+..+.. ...+|+.+++++|.+.+.. ...+..+.+|+.|+++++.+... ++..+....+|
T Consensus 233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L 312 (549)
T 2z81_A 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312 (549)
T ss_dssp CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTC
T ss_pred cccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccc
Confidence 9998765544432 1257999999999987632 23456788999999999987632 22223456789
Q ss_pred cEEEeeCCcccCCCCCCC-CCCCCCcEEEccCccccCcCc---ccccCcccchhhcccCccCCCCCc--ccccCCCCCCE
Q 042568 358 ERVYLSNNSLSGEIPSAF-GDIPHLGLLDLSKNKLSGSIP---DSFANLSQLRRLLLYGNHLSGTIP--SSLGKCVNLEI 431 (983)
Q Consensus 358 ~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~p--~~l~~l~~L~~ 431 (983)
+.|++++|.+. .+|..+ ..+++|+.|+|++|++++.+| ..++.+++|+.|++++|++++..+ ..+..+++|++
T Consensus 313 ~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp CEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCE
T ss_pred eEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCE
Confidence 99999999998 566655 579999999999999998764 347889999999999999985432 46889999999
Q ss_pred EEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCc
Q 042568 432 LDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNS 511 (983)
Q Consensus 432 L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 511 (983)
|++++|+++ .+|..+..+++|+. |++++|++++ +|..+. ++|+.|||++|+|++.+ ..+++|+.|+|++|+
T Consensus 392 L~Ls~N~l~-~lp~~~~~~~~L~~-L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~ 462 (549)
T 2z81_A 392 LDISRNTFH-PMPDSCQWPEKMRF-LNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNK 462 (549)
T ss_dssp EECTTCCCC-CCCSCCCCCTTCCE-EECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSC
T ss_pred EECCCCCCc-cCChhhcccccccE-EECCCCCccc-ccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCc
Confidence 999999999 68888999999996 9999999984 444332 58999999999999643 578899999999999
Q ss_pred ccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCC
Q 042568 512 LEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISN 566 (983)
Q Consensus 512 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 566 (983)
|+ .+|. ...+++|+.|+|++|++++.+|..|..+++|+.|++++|+++|.+|.
T Consensus 463 l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 463 LK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred cC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 99 5675 46799999999999999998888899999999999999999887764
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-49 Score=495.35 Aligned_cols=463 Identities=24% Similarity=0.264 Sum_probs=400.1
Q ss_pred CeEEEEEcccCCccccc-ccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhh--hcccccccE
Q 042568 77 NKVVELDLSARSIYGTI-SPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQ--LGSLHQLEY 153 (983)
Q Consensus 77 ~~v~~l~l~~~~l~g~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~--~~~L~~L~~ 153 (983)
.+++.|+|++|...+.+ |.+++++++|++|+|++|.+++..|..|+++++|++|+|++|.+++.+|.. |+++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 46899999999887788 678999999999999999999888999999999999999999999877776 999999999
Q ss_pred EeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccc--cccceeecccCccccccchhhhccCC-----
Q 042568 154 LDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECEL--RNLRFLLLWSNRLVGQVPQALANSSK----- 226 (983)
Q Consensus 154 L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~----- 226 (983)
|+|++|.+++..|...+ .++++|++|+|++|.+++..+ ..+..+ ++|+.|++++|.+.+..|..++.+.+
T Consensus 128 L~Ls~N~l~~~~~~~~~--~~L~~L~~L~Ls~N~i~~~~~-~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSF--GKLNSLKSIDFSSNQIFLVCE-HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp EEEESCCCCCCCCCGGG--GTCSSCCEEEEESSCCCCCCS-GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred EECCCCcccccccchhH--hhCCCCCEEECCCCcCCeeCH-HHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 99999999866554332 489999999999999987655 445556 89999999999999988888777766
Q ss_pred -cceecccccccccccchhhhcC-------------------------------------CCCccEEEccccccccCCCC
Q 042568 227 -LEWLDLESNMFSGELPSEIISK-------------------------------------MPQLQFLYLSYNDFVSHDGN 268 (983)
Q Consensus 227 -L~~L~Ls~N~l~~~~~~~~~~~-------------------------------------l~~L~~L~Ls~N~l~~~~~~ 268 (983)
|++|+|++|.+++.++..+... .++|++|+|++|.+....
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-- 282 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-- 282 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC--
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC--
Confidence 9999999998876665443321 267999999999886532
Q ss_pred CCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCC
Q 042568 269 TNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIP 348 (983)
Q Consensus 269 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 348 (983)
+..+..+++|++|+|++|++++..|..+..+ ++|++|+|++|.+++..|..+..+++|++|++++|++++..+
T Consensus 283 ------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 283 ------SRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp ------SCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred ------hhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 3557889999999999999999888888887 589999999999998889999999999999999999998888
Q ss_pred cccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCC-cccccCCC
Q 042568 349 HELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTI-PSSLGKCV 427 (983)
Q Consensus 349 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-p~~l~~l~ 427 (983)
..+..+++|++|+|++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+..++
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~ 426 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVP 426 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred hhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCC
Confidence 8899999999999999999843 33889999999999998 45543 467899999999999642 23466899
Q ss_pred CCCEEEccCccccCcCCc-cccCCCccceeccccCCCCC-----CCCccccccccccccccccccccccCCCcccccccc
Q 042568 428 NLEILDLSHNKISGIIPS-DVAGLRSLKLYLNLSSNHLD-----GPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIA 501 (983)
Q Consensus 428 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~L~l~~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 501 (983)
+|+.|+|++|++++..+. .+..+++|+. |++++|.++ +..|..|.++++|+.|+|++|+|++..|..|..+++
T Consensus 427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~-L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 427 HLQILILNQNRFSSCSGDQTPSENPSLEQ-LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp TCCEEEEESCCCCCCCSSSSSCSCTTCCB-CEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred ccceeeCCCCcccccccccccccCCcccc-ccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 999999999999976544 4566889996 999999997 455677999999999999999999988889999999
Q ss_pred cceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCC
Q 042568 502 LESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISN 566 (983)
Q Consensus 502 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 566 (983)
|+.|+|++|+|++..|..+. ++|+.|+|++|+|++.+|..| ++|+.|++++|++.+..+.
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence 99999999999987777766 899999999999999999876 4789999999999987653
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-49 Score=478.74 Aligned_cols=475 Identities=23% Similarity=0.233 Sum_probs=402.0
Q ss_pred CeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEec
Q 042568 77 NKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDL 156 (983)
Q Consensus 77 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~L 156 (983)
.+++.|+|++|.+.+..+.++.++++|++|||++|++++..|..|+++++|++|+|++|++++..|..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46899999999999888889999999999999999999877888999999999999999999877899999999999999
Q ss_pred cCcccccccCCcccccCCCcccceeecccccccC-CCCCcccccccccceeecccCccccccchhhhccCCc----ceec
Q 042568 157 GNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTG-EIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKL----EWLD 231 (983)
Q Consensus 157 s~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L----~~L~ 231 (983)
++|++++..+..+ ..+++|++|++++|.+++ .+| ..+.++++|++|++++|++++..|..++.+++| +.|+
T Consensus 108 ~~n~l~~l~~~~~---~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 108 VETNLASLENFPI---GHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp TTSCCCCSTTCSC---TTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred cccccccCCCccc---cccccccEEecCCCccceecCh-hhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence 9999984333344 489999999999999986 345 457789999999999999999889999999999 8999
Q ss_pred ccccccccccchhhhcCCCCccEEEccccccccC----------------------CCCCCCc----ccccccCCCCCcc
Q 042568 232 LESNMFSGELPSEIISKMPQLQFLYLSYNDFVSH----------------------DGNTNLE----PFFASLANSSNFQ 285 (983)
Q Consensus 232 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~----~~~~~l~~l~~L~ 285 (983)
+++|.++ .++...+..+ +|++|++++|..... .....+. ..+..+.++ .++
T Consensus 184 l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~ 260 (570)
T 2z63_A 184 LSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL-TIE 260 (570)
T ss_dssp CTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS-EEE
T ss_pred cCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc-chh
Confidence 9999998 4555666655 899999998832110 0000000 001111111 356
Q ss_pred EEEccCC-cccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeC
Q 042568 286 ELELAGN-NLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSN 364 (983)
Q Consensus 286 ~L~L~~n-~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 364 (983)
.+++++| .+.+.+|..+..+ ++|+.|++++|.+. .+|..+..+ +|++|++++|.++ .+|. ..+++|+.|++++
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~ 334 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGG-TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEES
T ss_pred hhhhhcchhhhhhchhhhcCc-CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcC
Confidence 7777777 7777788888777 57999999999998 688888888 9999999999998 5565 4788999999999
Q ss_pred CcccCCCCCCCCCCCCCcEEEccCccccCcC--cccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCc
Q 042568 365 NSLSGEIPSAFGDIPHLGLLDLSKNKLSGSI--PDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGI 442 (983)
Q Consensus 365 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 442 (983)
|.+.+..+. ..+++|+.|++++|++++.. |..+.++++|+.|++++|.+++. |..+..+++|+.|++++|++++.
T Consensus 335 n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESC
T ss_pred Ccccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccc
Confidence 998877665 78899999999999998654 77888999999999999999854 44599999999999999999987
Q ss_pred CC-ccccCCCccceeccccCCCCCCCCccccccccccccccccccccc-cCCCcccccccccceEEeCCCcccccccccc
Q 042568 443 IP-SDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLS-GSIPPQLGSCIALESLNLSGNSLEGLLPVSV 520 (983)
Q Consensus 443 ~p-~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 520 (983)
.| ..+..+++|+. |++++|.+++..|..+.++++|+.|+|++|+++ +.+|..+..+++|+.|+|++|++++..|..+
T Consensus 412 ~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 412 SEFSVFLSLRNLIY-LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp TTSCTTTTCTTCCE-EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cchhhhhcCCCCCE-EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence 66 56888999996 999999999999999999999999999999998 6789999999999999999999998889999
Q ss_pred cCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCCCC
Q 042568 521 GQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISNKG 568 (983)
Q Consensus 521 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~ 568 (983)
..+++|+.|++++|++++..|..|.++++|+.|++++|+++|.+|...
T Consensus 491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 999999999999999998888889999999999999999999888643
No 15
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1e-50 Score=438.43 Aligned_cols=263 Identities=29% Similarity=0.438 Sum_probs=205.4
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeeccc-CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTT-TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
+++...++||+|+||+||+|+++ ..||||+++... ..+..++|.+|++++++++|||||++++++.. +..++||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEc
Confidence 45667889999999999999875 359999986543 33456789999999999999999999999865 568999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
|++|+|.++++.. ..+++|..+..|+.|||+||+|||+++ ||||||||+|||+++++.+||+|||+|+......
T Consensus 113 ~~gGsL~~~l~~~---~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~ 186 (307)
T 3omv_A 113 CEGSSLYKHLHVQ---ETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp CSSCBHHHHHHTS---CCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC-----
T ss_pred CCCCCHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCccCHHHEEECCCCcEEEeeccCceecccCC
Confidence 9999999999753 346999999999999999999999985 9999999999999999999999999998765322
Q ss_pred ccccccCCCCccccccCccccccccccccccCC---CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG---KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.. ......+||+.|||||++.+ ..|+.++|||||||++|||+||+.||..... .
T Consensus 187 ~~-----------~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~----~-------- 243 (307)
T 3omv_A 187 GS-----------QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN----R-------- 243 (307)
T ss_dssp ------------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC----H--------
T ss_pred cc-----------eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCCh----H--------
Confidence 11 12234579999999999864 4689999999999999999999999864211 0
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
..+...+...... +.....+.+++.++.+++.+||+.||++|||+.||+++|+.++...
T Consensus 244 -----~~~~~~~~~~~~~---p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l 302 (307)
T 3omv_A 244 -----DQIIFMVGRGYAS---PDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp -----HHHHHHHHTTCCC---CCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHhcCCCC---CCcccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccC
Confidence 1111111111100 0011123446788999999999999999999999999999886554
No 16
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=6.7e-51 Score=442.23 Aligned_cols=258 Identities=26% Similarity=0.397 Sum_probs=210.0
Q ss_pred CCCCCccccCCcEeEEEEEEC------CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 669 FCPSSLIGSGRFGHVYKGVLQ------DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 669 f~~~~~iG~G~~g~Vy~~~~~------~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
+...+.||+|+||+||+|.+. +++.||||+++........++|.+|++++++++|||||+++|+|..++..++|
T Consensus 28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV 107 (308)
T 4gt4_A 28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMI 107 (308)
T ss_dssp EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred CeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEE
Confidence 345688999999999999863 46789999997666555678999999999999999999999999999999999
Q ss_pred EecccCcccccccccccC------------cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCE
Q 042568 743 LPLMSNGSLENHLYPSHG------------LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTA 810 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~------------~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~ 810 (983)
||||++|+|.+++..... ....++|..+.+|+.|||+||+|||+++ ||||||||+|||+++++.+
T Consensus 108 ~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~~ 184 (308)
T 4gt4_A 108 FSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLNV 184 (308)
T ss_dssp EECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCE
T ss_pred EEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCccccceEECCCCCE
Confidence 999999999999964321 1346999999999999999999999996 9999999999999999999
Q ss_pred EEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccC
Q 042568 811 LVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFH 889 (983)
Q Consensus 811 kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~ 889 (983)
||+|||+|+.....+.. .......||+.|||||++.+..++.++|||||||++|||+| |+.||....
T Consensus 185 Ki~DFGlar~~~~~~~~-----------~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~- 252 (308)
T 4gt4_A 185 KISDLGLFREVYAADYY-----------KLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS- 252 (308)
T ss_dssp EECCSCCBCGGGGGGCB-----------CSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC-
T ss_pred EECCcccceeccCCCce-----------eEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC-
Confidence 99999999876533211 22234579999999999999999999999999999999999 899986421
Q ss_pred CCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 042568 890 DGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRL 965 (983)
Q Consensus 890 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 965 (983)
.. ++++. +........ .++++.++.+++.+||+.||++|||++||+++|+.+
T Consensus 253 ----~~------------~~~~~-i~~~~~~~~-------p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 253 ----NQ------------DVVEM-IRNRQVLPC-------PDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp ----HH------------HHHHH-HHTTCCCCC-------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred ----HH------------HHHHH-HHcCCCCCC-------cccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 11 11111 111111111 134667899999999999999999999999999865
No 17
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=7.2e-51 Score=440.03 Aligned_cols=264 Identities=27% Similarity=0.417 Sum_probs=213.0
Q ss_pred CCCCCCCccccCCcEeEEEEEEC------CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCcee
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ------DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKA 740 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~------~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 740 (983)
++|...+.||+|+||+||+|++. ++..||||+++... ....++|.+|++++++++|||||+++++|.+++..+
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~-~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 91 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS-DNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI 91 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCC-hHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE
Confidence 35667889999999999999864 46789999997543 335678999999999999999999999999999999
Q ss_pred EEEecccCccccccccccc---------CcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEE
Q 042568 741 LVLPLMSNGSLENHLYPSH---------GLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTAL 811 (983)
Q Consensus 741 lv~e~~~~gsL~~~l~~~~---------~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~k 811 (983)
+|||||++|+|.++++... .....++|..+++|+.|||+||+|||+++ ||||||||+|||+++++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEE
T ss_pred EEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccCHhhEEECCCCcEE
Confidence 9999999999999997532 12357999999999999999999999985 99999999999999999999
Q ss_pred EccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCC
Q 042568 812 VADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHD 890 (983)
Q Consensus 812 l~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~ 890 (983)
|+|||+|+........ .......||+.|||||++.+..|+.++|||||||++|||+| |+.||....
T Consensus 169 i~DFGla~~~~~~~~~-----------~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~-- 235 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYY-----------RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS-- 235 (299)
T ss_dssp ECCCSCHHHHTGGGCE-----------EETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--
T ss_pred ECCcccceecCCCCce-----------eecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC--
Confidence 9999999876532211 22233579999999999999999999999999999999999 899986421
Q ss_pred CCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcC
Q 042568 891 GSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLS 970 (983)
Q Consensus 891 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~ 970 (983)
. .+++........ ...| ..++.++.+++.+||+.||++|||++||.+.|+++.+...
T Consensus 236 ---~------------~~~~~~i~~~~~-~~~p-------~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p 292 (299)
T 4asz_A 236 ---N------------NEVIECITQGRV-LQRP-------RTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASP 292 (299)
T ss_dssp ---H------------HHHHHHHHHTCC-CCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred ---H------------HHHHHHHHcCCC-CCCC-------ccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCC
Confidence 1 111222111111 1111 2356789999999999999999999999999999876543
No 18
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=2.6e-50 Score=441.82 Aligned_cols=262 Identities=27% Similarity=0.406 Sum_probs=206.2
Q ss_pred CCCCCCccccCCcEeEEEEEEC------CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeE
Q 042568 668 GFCPSSLIGSGRFGHVYKGVLQ------DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~~------~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 741 (983)
+|...++||+|+||+||+|+++ +++.||||+++... ....++|.+|++++++++|||||+++++|.+.+..++
T Consensus 42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~-~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS-ESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCS-HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 4556788999999999999864 46789999996543 3356789999999999999999999999999999999
Q ss_pred EEecccCcccccccccccC-----------cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCE
Q 042568 742 VLPLMSNGSLENHLYPSHG-----------LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTA 810 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~-----------~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~ 810 (983)
|||||++|+|.++++.... ...+++|.++++|+.|||+||+|||+.+ ||||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHhhEEECCCCcE
Confidence 9999999999999875432 1246999999999999999999999985 9999999999999999999
Q ss_pred EEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccC
Q 042568 811 LVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFH 889 (983)
Q Consensus 811 kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~ 889 (983)
||+|||+|+........ .......||+.|||||++.+..++.++|||||||++|||+| |+.||....
T Consensus 198 Ki~DFGla~~~~~~~~~-----------~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~- 265 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYY-----------RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS- 265 (329)
T ss_dssp EECCCC---------------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC-
T ss_pred EEcccccceeccCCCcc-----------eecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC-
Confidence 99999999876432211 12233579999999999999999999999999999999999 899986421
Q ss_pred CCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 890 DGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 890 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
. .++++..... .....| ..++.++.+++.+||+.||++|||++||+++|+.+.+..
T Consensus 266 ----~------------~~~~~~i~~g-~~~~~p-------~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 266 ----N------------TEAIDCITQG-RELERP-------RACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp ----H------------HHHHHHHHHT-CCCCCC-------TTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred ----H------------HHHHHHHHcC-CCCCCc-------ccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCC
Confidence 1 1112221111 111111 235678999999999999999999999999999997753
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-48 Score=467.92 Aligned_cols=481 Identities=22% Similarity=0.202 Sum_probs=408.6
Q ss_pred EEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCccc
Q 042568 82 LDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKL 161 (983)
Q Consensus 82 l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l 161 (983)
++.++.+++ .+|..+. +++++|||++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 333444554 4565443 5799999999999988888999999999999999999987788999999999999999999
Q ss_pred ccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCcccc-ccchhhhccCCcceecccccccccc
Q 042568 162 VGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVG-QVPQALANSSKLEWLDLESNMFSGE 240 (983)
Q Consensus 162 ~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ 240 (983)
++..|..+ ..+++|++|++++|.+++ ++...+..+++|++|++++|.+++ .+|..|+++++|++|++++|+++ .
T Consensus 89 ~~~~~~~~---~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~ 163 (570)
T 2z63_A 89 QSLALGAF---SGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-S 163 (570)
T ss_dssp CEECTTTT---TTCTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-E
T ss_pred CccCHhhh---cCcccccccccccccccc-CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-e
Confidence 85555555 489999999999999984 555557899999999999999987 47999999999999999999998 4
Q ss_pred cchhhhcCCCCc----cEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCccccc-------------------
Q 042568 241 LPSEIISKMPQL----QFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGM------------------- 297 (983)
Q Consensus 241 ~~~~~~~~l~~L----~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~------------------- 297 (983)
++...+..+++| ++|++++|.+..... ..+. ..+|++|++++|.....
T Consensus 164 ~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~--------~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP--------GAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECT--------TTTT-TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred ecHHHccchhccchhhhhcccCCCCceecCH--------HHhc-cCcceeEecccccccccchhhhhcCccccceeeecc
Confidence 555666778888 899999999876432 2233 33799999988743210
Q ss_pred ------------CCccccccc-cCeeEEEccCc-cccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEee
Q 042568 298 ------------IPSIIGDLS-TNLVQIHLDCN-LIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLS 363 (983)
Q Consensus 298 ------------~p~~~~~l~-~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 363 (983)
....+..+. -.++.++++.| .+.+.+|..+..+++|++|++++|.++ .+|..+..+ +|++|+++
T Consensus 235 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~ 312 (570)
T 2z63_A 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELV 312 (570)
T ss_dssp EECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEE
T ss_pred ccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeec
Confidence 011111111 14677888888 788889999999999999999999999 688888888 99999999
Q ss_pred CCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCC--cccccCCCCCCEEEccCccccC
Q 042568 364 NNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTI--PSSLGKCVNLEILDLSHNKISG 441 (983)
Q Consensus 364 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~ 441 (983)
+|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+++.. |..+..+++|++|++++|++++
T Consensus 313 ~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 387 (570)
T 2z63_A 313 NCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387 (570)
T ss_dssp SCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE
T ss_pred cCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc
Confidence 99999 5554 5789999999999999877665 78999999999999998554 6789999999999999999996
Q ss_pred cCCccccCCCccceeccccCCCCCCCCc-cccccccccccccccccccccCCCcccccccccceEEeCCCccc-cccccc
Q 042568 442 IIPSDVAGLRSLKLYLNLSSNHLDGPLP-LELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLE-GLLPVS 519 (983)
Q Consensus 442 ~~p~~~~~l~~L~~~L~l~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~ 519 (983)
..+. +..+++|+. |++++|.+++..| ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|+++ +.+|..
T Consensus 388 ~~~~-~~~l~~L~~-L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~ 465 (570)
T 2z63_A 388 MSSN-FLGLEQLEH-LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465 (570)
T ss_dssp EEEE-EETCTTCCE-EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred cccc-ccccCCCCE-EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh
Confidence 5554 999999996 9999999998776 57899999999999999999999999999999999999999998 679999
Q ss_pred ccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCC-CCCCcccccccccCCcCccCCC
Q 042568 520 VGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISN-KGAFSSLTIASFQGNDGLCGEI 588 (983)
Q Consensus 520 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~N~~lc~~~ 588 (983)
+..+++|+.|++++|++++..|..|..+++|++|++++|++++.+|. ...+..+..+.+.+|++.|.-+
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 99999999999999999988899999999999999999999998875 4678889999999999988644
No 20
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=8.5e-50 Score=437.04 Aligned_cols=252 Identities=21% Similarity=0.322 Sum_probs=204.1
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
++|++.+.||+|+||+||+|+.. +|+.||||+++.... ....+++.+|++++++++|||||++++++.+.+..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 57899999999999999999964 689999999976542 3346789999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
||+||+|.+++.... ...+++..++.|+.||+.||+|||+++ ||||||||+|||+++++.+||+|||+|+.....
T Consensus 104 y~~gg~L~~~i~~~~--~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQK--GVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp CCTTCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred CCCCCcHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCCEEEcccccceeecCC
Confidence 999999999997543 345789999999999999999999996 999999999999999999999999999876432
Q ss_pred cccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCC
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
. ......+||+.|||||++.+..|+.++||||+||++|||++|+.||... +..+
T Consensus 179 ~-------------~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~-----~~~~-------- 232 (350)
T 4b9d_A 179 V-------------ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG-----SMKN-------- 232 (350)
T ss_dssp H-------------HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHH--------
T ss_pred c-------------ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHH--------
Confidence 1 1123467999999999999999999999999999999999999998632 1111
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.+........+. .+...+.++.+++.+||+.||++|||++|++++
T Consensus 233 ----~~~~i~~~~~~~--------~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 233 ----LVLKIISGSFPP--------VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp ----HHHHHHHTCCCC--------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred ----HHHHHHcCCCCC--------CCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 222222221110 112345788999999999999999999999986
No 21
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=3.3e-49 Score=431.71 Aligned_cols=250 Identities=22% Similarity=0.292 Sum_probs=208.6
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
+.|+..+.||+|+||+||+|++. +|+.||||+++..... ..+.+.+|++++++++|||||++++++.+.+..|+||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~-~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 152 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ-RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 152 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS-SGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchh-HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeC
Confidence 45888899999999999999975 6899999999765433 456789999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
|++|+|.+++.. ..+++..++.|+.||++||+|||+++ ||||||||+|||++.++.+||+|||+|+.+....
T Consensus 153 ~~gg~L~~~l~~-----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 224 (346)
T 4fih_A 153 LEGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV 224 (346)
T ss_dssp CTTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS
T ss_pred CCCCcHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEECCCCCEEEecCcCceecCCCC
Confidence 999999998863 45999999999999999999999996 9999999999999999999999999998765322
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHR 905 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~ 905 (983)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||... ...
T Consensus 225 -------------~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~---------- 276 (346)
T 4fih_A 225 -------------PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE-----PPL---------- 276 (346)
T ss_dssp -------------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHH----------
T ss_pred -------------CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHH----------
Confidence 1123468999999999999999999999999999999999999998631 111
Q ss_pred CcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 906 LDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
+.+.. +........ ..+..++.++.+++.+|++.||++|||++|+++|
T Consensus 277 --~~~~~-i~~~~~~~~-----~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 277 --KAMKM-IRDNLPPRL-----KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp --HHHHH-HHHSSCCCC-----SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred --HHHHH-HHcCCCCCC-----CccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 11111 111111111 1234466789999999999999999999999986
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.9e-49 Score=478.15 Aligned_cols=456 Identities=21% Similarity=0.277 Sum_probs=389.1
Q ss_pred CCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccC------CC------CchhhhcccccccEEeccCcccccccCCc
Q 042568 101 SSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSL------QG------KIPSQLGSLHQLEYLDLGNNKLVGEIPIP 168 (983)
Q Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l------~~------~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~ 168 (983)
.+++.|+|++|+++|.+|++|++|++|++|+|++|.+ .| .+|... +..|+ +++++|.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 4788999999999999999999999999999999987 33 556655 67788 999999999888776
Q ss_pred ccccCCCcccceeecccccccCCCCCcccccccccceeecc--cCccccccchhhhccCCcceecccccccccc------
Q 042568 169 IFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLW--SNRLVGQVPQALANSSKLEWLDLESNMFSGE------ 240 (983)
Q Consensus 169 ~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~--~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~------ 240 (983)
+.. .+..+..+++....+.. .....++.+.+. +|++++ +|..|+++++|++|+|++|+++|.
T Consensus 158 ~~~--~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 227 (636)
T 4eco_A 158 FSD--LIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAW 227 (636)
T ss_dssp SCH--HHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred HHH--HHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccc
Confidence 642 24455556665544331 123344444444 588998 899999999999999999999975
Q ss_pred -----------cchhhhc--CCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCc-ccc-cCCcccccc
Q 042568 241 -----------LPSEIIS--KMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNN-LGG-MIPSIIGDL 305 (983)
Q Consensus 241 -----------~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l 305 (983)
+|..+ . ++++|++|+|++|++.. .++..+.++++|++|++++|+ +++ .+|..++.+
T Consensus 228 ~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~--------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L 298 (636)
T 4eco_A 228 ENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLT--------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298 (636)
T ss_dssp SCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCS--------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred cccccchhcccCchhh-hhcccCCCCEEEecCCcCCc--------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhh
Confidence 77664 5 89999999999998754 345678899999999999998 998 899988876
Q ss_pred c-----cCeeEEEccCccccccCCC--CCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCC
Q 042568 306 S-----TNLVQIHLDCNLIYGKIPP--HISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDI 378 (983)
Q Consensus 306 ~-----~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 378 (983)
. ++|++|++++|.++ .+|. .++++++|++|++++|+++|.+| .++.+++|++|+|++|.++ .+|..+..+
T Consensus 299 ~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 375 (636)
T 4eco_A 299 ADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGF 375 (636)
T ss_dssp HHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEE
T ss_pred hccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhh
Confidence 2 58999999999999 8999 89999999999999999999999 9999999999999999999 889999999
Q ss_pred CC-CcEEEccCccccCcCcccccCcc--cchhhcccCccCCCCCccccc-------CCCCCCEEEccCccccCcCCcccc
Q 042568 379 PH-LGLLDLSKNKLSGSIPDSFANLS--QLRRLLLYGNHLSGTIPSSLG-------KCVNLEILDLSHNKISGIIPSDVA 448 (983)
Q Consensus 379 ~~-L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~~~~ 448 (983)
++ |+.|+|++|+++ .+|..+..++ +|+.|++++|.+++.+|..+. .+++|+.|+|++|+++...+..+.
T Consensus 376 ~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 454 (636)
T 4eco_A 376 TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454 (636)
T ss_dssp CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH
T ss_pred cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc
Confidence 99 999999999999 7888888765 999999999999999999888 888999999999999954444566
Q ss_pred CCCccceeccccCCCCCCCCccc-cccc-------cccccccccccccccCCCcccc--cccccceEEeCCCcccccccc
Q 042568 449 GLRSLKLYLNLSSNHLDGPLPLE-LSKM-------DMVLAIDLSFNNLSGSIPPQLG--SCIALESLNLSGNSLEGLLPV 518 (983)
Q Consensus 449 ~l~~L~~~L~l~~N~l~~~~p~~-~~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~ 518 (983)
.+++|+. |+|++|+++ .+|.. +... ++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|++++ +|.
T Consensus 455 ~l~~L~~-L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~ 530 (636)
T 4eco_A 455 TGSPLSS-INLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530 (636)
T ss_dssp TTCCCSE-EECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred cCCCCCE-EECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cCh
Confidence 7899996 999999999 55554 4333 39999999999999 7999887 99999999999999998 899
Q ss_pred cccCCCCccEEec------CCccccCCcCccccCCCCcceEeccCCccccccCCCCCCcccccccccCCcCccCCC
Q 042568 519 SVGQLPYLKQFDV------SSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISNKGAFSSLTIASFQGNDGLCGEI 588 (983)
Q Consensus 519 ~~~~l~~L~~L~l------s~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~N~~lc~~~ 588 (983)
.+..+++|+.|+| ++|++.+.+|..+.++++|+.|++++|++ +.+|.. .++.+..+.+.+|+..|-..
T Consensus 531 ~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISIDL 604 (636)
T ss_dssp GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEEC
T ss_pred hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccccH
Confidence 9999999999999 56889999999999999999999999999 556553 33788999999999988654
No 23
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=8.2e-49 Score=427.38 Aligned_cols=259 Identities=21% Similarity=0.262 Sum_probs=207.3
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
+.|...++||+|+||+||+|++. +|+.||||+++.... ..+|++++++++|||||++++++.+.+..|+||||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 45677788999999999999965 689999999975432 24799999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC-CEEEccccccccccCC
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL-TALVADFGIAKLVKGI 824 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~-~~kl~Dfgla~~~~~~ 824 (983)
++||+|.+++... ..+++..+..|+.||++||+|||+++ ||||||||+|||++.++ .+||+|||+|+.+...
T Consensus 132 ~~gg~L~~~l~~~----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~ 204 (336)
T 4g3f_A 132 LEGGSLGQLIKQM----GCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPD 204 (336)
T ss_dssp CTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC---
T ss_pred cCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEeCCCCEEEEeeCCCCeEccCC
Confidence 9999999999753 46999999999999999999999996 99999999999999987 6999999999977543
Q ss_pred cccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCC
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
.... ........+||+.|||||++.+..|+.++||||+||++|||++|+.||...... .+..
T Consensus 205 ~~~~--------~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~--~~~~-------- 266 (336)
T 4g3f_A 205 GLGK--------SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRG--PLCL-------- 266 (336)
T ss_dssp -----------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCS--CCHH--------
T ss_pred Cccc--------ceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH--HHHH--------
Confidence 2110 011223467999999999999999999999999999999999999999643211 1111
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
.......+ ....+.+++.++.+++.+||+.||++|||+.|+++++.+..+..
T Consensus 267 -------~i~~~~~~------~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~ 318 (336)
T 4g3f_A 267 -------KIASEPPP------IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEV 318 (336)
T ss_dssp -------HHHHSCCG------GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred -------HHHcCCCC------chhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhh
Confidence 11111000 01112345678999999999999999999999999998876654
No 24
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=5.8e-49 Score=428.51 Aligned_cols=278 Identities=22% Similarity=0.281 Sum_probs=203.9
Q ss_pred CCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCC----ceeEEE
Q 042568 668 GFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPD----FKALVL 743 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~lv~ 743 (983)
+|...+.||+|+||+||+|++. |+.||||+++.... ....+..|+..+.+++|||||+++++|..++ ..++||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~~--~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSREE--RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGGH--HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred EEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECccch--hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 4566789999999999999985 89999999964422 1223345666667889999999999997654 569999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccC-----CCCeEeecCCCCCeEeCCCCCEEEcccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHS-----PIKVVHCDLKPSNILLDEDLTALVADFGIA 818 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~-----~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla 818 (983)
||+++|+|.++++. .+++|..+.+++.|+|+||+|||+++ .++||||||||+|||++.++.+||+|||+|
T Consensus 81 Ey~~~gsL~~~l~~-----~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla 155 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR-----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp ECCTTCBHHHHHHH-----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred cCCCCCcHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCC
Confidence 99999999999973 45899999999999999999999861 235999999999999999999999999999
Q ss_pred ccccCCcccccccCCCCccccccCccccccccccccccCCC------CCCccchhHHHHHHHHHHHhCCCCCCcccCCCC
Q 042568 819 KLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK------RASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGS 892 (983)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~ 892 (983)
+......... .......+||+.|||||++.+. .++.++|||||||++|||+||+.||........
T Consensus 156 ~~~~~~~~~~---------~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~ 226 (303)
T 3hmm_A 156 VRHDSATDTI---------DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL 226 (303)
T ss_dssp EEEETTTTEE---------SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCC
T ss_pred ccccCCCCce---------eeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccc
Confidence 8775433211 1122345799999999998764 467899999999999999999988754322221
Q ss_pred chHHHHHhhCCCC-CcHHHHHHH-hhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 893 SLHEWVKRHYPHR-LDPIVEKAI-AKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 893 ~l~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
.+..+ .+.. ..+.+...+ ........|. .....+++..+.+++.+||+.||++||||.||++.|+++.+.
T Consensus 227 p~~~~----~~~~~~~~~~~~~~~~~~~rp~~p~--~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 227 PYYDL----VPSDPSVEEMRKVVCEQKLRPNIPN--RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp TTTTT----SCSSCCHHHHHHHHTTSCCCCCCCG--GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred cchhc----ccccchHHHHHHHHhcccCCCCCCc--cccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 11110 0110 111112211 1111111121 111235778899999999999999999999999999998764
No 25
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=8.2e-49 Score=433.32 Aligned_cols=266 Identities=26% Similarity=0.365 Sum_probs=214.9
Q ss_pred hCCCCCCCccccCCcEeEEEEEECC------CcEEEEEEeecccCcchhHHHHHHHHHHHhcCC-CCccceeeEEecC-C
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQD------NTRIAVKVLDLTTTGEITGSFKRECQILKRIRH-RNLIRIITICSKP-D 737 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~------~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~-~ 737 (983)
.++|...+.||+|+||+||+|.+.. ++.||||+++........+.|.+|++++++++| ||||+++++|..+ +
T Consensus 63 ~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~ 142 (353)
T 4ase_A 63 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG 142 (353)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS
T ss_pred HHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCC
Confidence 3578888999999999999998642 357999999776655566789999999999965 8999999999765 4
Q ss_pred ceeEEEecccCcccccccccccC------------cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeC
Q 042568 738 FKALVLPLMSNGSLENHLYPSHG------------LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLD 805 (983)
Q Consensus 738 ~~~lv~e~~~~gsL~~~l~~~~~------------~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~ 805 (983)
..++|||||++|+|.++++.... ....+++..+..|+.|||+||+|||+++ ||||||||+|||++
T Consensus 143 ~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDLK~~NILl~ 219 (353)
T 4ase_A 143 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLS 219 (353)
T ss_dssp CCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEC
T ss_pred EEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCC---eecCccCccceeeC
Confidence 67999999999999999975432 1345899999999999999999999996 99999999999999
Q ss_pred CCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCC
Q 042568 806 EDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPT 884 (983)
Q Consensus 806 ~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~ 884 (983)
+++.+||+|||+|+.+...... .......||+.|||||++.+..|+.++|||||||++|||+| |+.||
T Consensus 220 ~~~~vKi~DFGlar~~~~~~~~-----------~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf 288 (353)
T 4ase_A 220 EKNVVKICDFGLARDIYKDPDY-----------VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY 288 (353)
T ss_dssp GGGCEEECCCGGGSCTTTCTTS-----------EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred CCCCEEECcchhhhhcccCCCc-----------eeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCC
Confidence 9999999999999876533221 22234579999999999999999999999999999999998 99998
Q ss_pred CcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 042568 885 DVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGR 964 (983)
Q Consensus 885 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 964 (983)
..... .+.+...+........| +.++.++.+++.+||+.||++|||++||+++|++
T Consensus 289 ~~~~~-----------------~~~~~~~i~~g~~~~~p-------~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~ 344 (353)
T 4ase_A 289 PGVKI-----------------DEEFCRRLKEGTRMRAP-------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGN 344 (353)
T ss_dssp TTCCC-----------------SHHHHHHHHHTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCH-----------------HHHHHHHHHcCCCCCCC-------ccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHH
Confidence 64211 11122222222211112 2245789999999999999999999999999999
Q ss_pred hHhhc
Q 042568 965 LKQYL 969 (983)
Q Consensus 965 ~~~~~ 969 (983)
+.+..
T Consensus 345 llq~~ 349 (353)
T 4ase_A 345 LLQAN 349 (353)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87653
No 26
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=4.6e-49 Score=423.97 Aligned_cols=250 Identities=21% Similarity=0.326 Sum_probs=207.7
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|.+.+.||+|+||+||+|+.. +++.||||++++.. .....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 46889999999999999999964 68999999997542 2234678999999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||++||+|.+++... ..+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+.+..
T Consensus 112 Ey~~gG~L~~~i~~~----~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~ 184 (311)
T 4aw0_A 112 SYAKNGELLKYIRKI----GSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184 (311)
T ss_dssp CCCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred ecCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEEcCCCCEEEEEcCCceecCC
Confidence 999999999999753 46999999999999999999999996 99999999999999999999999999998754
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
.... ......+||+.|||||++.+..|+.++||||+||++|||++|+.||... +..
T Consensus 185 ~~~~-----------~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~-------- 240 (311)
T 4aw0_A 185 ESKQ-----------ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG-----NEG-------- 240 (311)
T ss_dssp TTTC-----------CCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHH--------
T ss_pred CCCc-----------ccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----CHH--------
Confidence 3221 2234468999999999999999999999999999999999999999631 111
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAH 960 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~ 960 (983)
+++........ ..| +..+.++.+++.+|++.||++|||++|++.
T Consensus 241 ----~~~~~i~~~~~--~~p-------~~~s~~~~dli~~lL~~dp~~R~t~~e~~~ 284 (311)
T 4aw0_A 241 ----LIFAKIIKLEY--DFP-------EKFFPKARDLVEKLLVLDATKRLGCEEMEG 284 (311)
T ss_dssp ----HHHHHHHHTCC--CCC-------TTCCHHHHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred ----HHHHHHHcCCC--CCC-------cccCHHHHHHHHHHccCCHhHCcChHHHcC
Confidence 12222222111 111 123467899999999999999999998753
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-48 Score=464.57 Aligned_cols=485 Identities=21% Similarity=0.233 Sum_probs=401.3
Q ss_pred EECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhccccc
Q 042568 71 KCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQ 150 (983)
Q Consensus 71 ~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~ 150 (983)
.|... .| .|.++++++ .+|+.+. ++|++|+|++|.+++..|..|+++++|++|+|++|+|++..|..|+++++
T Consensus 3 ~C~~~--~~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 75 (549)
T 2z81_A 3 SCDAS--GV--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75 (549)
T ss_dssp EECTT--SE--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCC--ce--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence 57542 24 688998887 6777664 79999999999999888999999999999999999999888899999999
Q ss_pred ccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCcccccc-chhhhccCCcce
Q 042568 151 LEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQV-PQALANSSKLEW 229 (983)
Q Consensus 151 L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~ 229 (983)
|++|+|++|++++..|..+ ..+++|++|+|++|.+++......+..+++|++|++++|++.+.+ +..|+++++|++
T Consensus 76 L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWF---GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp CCEEECTTSCCCSCCHHHH---TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCEEECCCCccCccCHHHh---ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 9999999999996554445 488999999999999986333346779999999999999954445 478999999999
Q ss_pred ecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccC--Ccccccccc
Q 042568 230 LDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMI--PSIIGDLST 307 (983)
Q Consensus 230 L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~ 307 (983)
|++++|++++.+|. .+..+++|++|+++.|.+.... . ..+..+++|++|++++|++++.. |..+....+
T Consensus 153 L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~------~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 153 LEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAFLL------E--IFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp EEEEETTCCEECTT-TTTTCSEEEEEEEECSBSTTHH------H--HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred eeccCCcccccChh-hhhccccCceEecccCcccccc------h--hhHhhcccccEEEccCCccccccccccchhhhhh
Confidence 99999999976664 4688999999999999864321 1 11345899999999999999753 334444457
Q ss_pred CeeEEEccCccccccCC----CCCCCCCcccEEeccccccCCCC------CcccccCCCCcEEEeeCCcccCCC-----C
Q 042568 308 NLVQIHLDCNLIYGKIP----PHISNLVNLTLLNLSSNLLNGTI------PHELCLMSKLERVYLSNNSLSGEI-----P 372 (983)
Q Consensus 308 ~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~------p~~l~~l~~L~~L~L~~N~l~~~~-----p 372 (983)
+|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+.. ...+..+.+|+.|++.++.+.... +
T Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~ 303 (549)
T 2z81_A 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303 (549)
T ss_dssp CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence 89999999999987543 44567889999999999987642 234567889999999999876421 1
Q ss_pred CCCCCCCCCcEEEccCccccCcCcccc-cCcccchhhcccCccCCCCCcc---cccCCCCCCEEEccCccccCcCC--cc
Q 042568 373 SAFGDIPHLGLLDLSKNKLSGSIPDSF-ANLSQLRRLLLYGNHLSGTIPS---SLGKCVNLEILDLSHNKISGIIP--SD 446 (983)
Q Consensus 373 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p--~~ 446 (983)
..+...++|+.|++++|++. .+|..+ ..+++|+.|++++|++++.+|. .++.+++|++|++++|++++..+ ..
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 382 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred hhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence 11233568999999999998 566665 5799999999999999976643 47889999999999999986543 45
Q ss_pred ccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCc
Q 042568 447 VAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYL 526 (983)
Q Consensus 447 ~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 526 (983)
+..+++|+. |++++|+++ .+|..+..+++|++|+|++|+++ .+|..+. ++|+.|+|++|++++.+ ..+++|
T Consensus 383 ~~~l~~L~~-L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L 453 (549)
T 2z81_A 383 LLTLKNLTS-LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRL 453 (549)
T ss_dssp GGGCTTCCE-EECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTC
T ss_pred hhcCCCCCE-EECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChh
Confidence 888999996 999999999 68999999999999999999998 5665543 58999999999999753 578999
Q ss_pred cEEecCCccccCCcCccccCCCCcceEeccCCccccccCC-CCCCcccccccccCCcCccC
Q 042568 527 KQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISN-KGAFSSLTIASFQGNDGLCG 586 (983)
Q Consensus 527 ~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~N~~lc~ 586 (983)
+.|+|++|+++ .+|. ...+++|++|++++|++++.+|. ...+..+..+++.+|++.|.
T Consensus 454 ~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 454 QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred cEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 99999999998 7887 56899999999999999998886 57788899999999999886
No 28
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=3.3e-48 Score=415.75 Aligned_cols=248 Identities=26% Similarity=0.397 Sum_probs=196.9
Q ss_pred CCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc-CcchhHHHHHHHHHHHhcCCCCccceeeEEec----CCceeEEE
Q 042568 670 CPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT-TGEITGSFKRECQILKRIRHRNLIRIITICSK----PDFKALVL 743 (983)
Q Consensus 670 ~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ 743 (983)
...++||+|+||+||+|.+. ++..||||.+.... .....++|.+|++++++++|||||+++++|.. ....++||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 45667999999999999965 68889999996543 33346789999999999999999999999864 34579999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC-CCCEEEcccccccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE-DLTALVADFGIAKLVK 822 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~-~~~~kl~Dfgla~~~~ 822 (983)
|||++|+|.+++.. ...+++..+..|+.||++||+|||++++ +||||||||+|||++. ++.+||+|||+|+...
T Consensus 109 Ey~~gg~L~~~l~~----~~~l~~~~~~~~~~qi~~aL~ylH~~~~-~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~ 183 (290)
T 3fpq_A 109 ELMTSGTLKTYLKR----FKVMKIKVLRSWCRQILKGLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR 183 (290)
T ss_dssp ECCCSCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHTSSS-CCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred eCCCCCCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCCC-CEEecccChhheeEECCCCCEEEEeCcCCEeCC
Confidence 99999999999975 3468999999999999999999999853 4999999999999984 7999999999998543
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
. ......+||+.|||||++.+ .|+.++|||||||++|||+||+.||... ........
T Consensus 184 ~---------------~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~----~~~~~~~~--- 240 (290)
T 3fpq_A 184 A---------------SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC----QNAAQIYR--- 240 (290)
T ss_dssp T---------------TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC----SSHHHHHH---
T ss_pred C---------------CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCC----CcHHHHHH---
Confidence 2 11223589999999998875 6999999999999999999999998532 11111111
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.+.... .+.... ...+.++.+++.+||+.||++|||++|+++|
T Consensus 241 ----------~i~~~~---~~~~~~---~~~~~~~~~li~~~L~~dP~~R~s~~e~l~H 283 (290)
T 3fpq_A 241 ----------RVTSGV---KPASFD---KVAIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp ----------HHTTTC---CCGGGG---GCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred ----------HHHcCC---CCCCCC---ccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 111110 111111 1234578999999999999999999999875
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-47 Score=455.60 Aligned_cols=454 Identities=20% Similarity=0.247 Sum_probs=278.9
Q ss_pred EEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcc
Q 042568 81 ELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNK 160 (983)
Q Consensus 81 ~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~ 160 (983)
.||+++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|+|++..|..|+++++|++|||++|+
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 4666666666 4555544 666666666666665555666666666666666666665556666666666666666666
Q ss_pred cccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccccc
Q 042568 161 LVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGE 240 (983)
Q Consensus 161 l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 240 (983)
++ .+|.. .+++|++|+|++|.+++. .+|..|+++++|++|+|++|++++
T Consensus 81 l~-~lp~~-----~l~~L~~L~L~~N~l~~~------------------------~~p~~~~~l~~L~~L~L~~n~l~~- 129 (520)
T 2z7x_B 81 LV-KISCH-----PTVNLKHLDLSFNAFDAL------------------------PICKEFGNMSQLKFLGLSTTHLEK- 129 (520)
T ss_dssp CC-EEECC-----CCCCCSEEECCSSCCSSC------------------------CCCGGGGGCTTCCEEEEEESSCCG-
T ss_pred ee-ecCcc-----ccCCccEEeccCCccccc------------------------cchhhhccCCcceEEEecCcccch-
Confidence 65 44432 344455555555554431 234455555555555555555442
Q ss_pred cchhhhcCCCCc--cEEEccccccccCCCCCCCcccccccCCCC-CccEEEccCCcccccCCccccccccCeeEEEccCc
Q 042568 241 LPSEIISKMPQL--QFLYLSYNDFVSHDGNTNLEPFFASLANSS-NFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCN 317 (983)
Q Consensus 241 ~~~~~~~~l~~L--~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N 317 (983)
..+..+++| ++|+|++|.+.... ..+..+..+. +...+++++|++.+.++.....-.++|+.|++++|
T Consensus 130 ---~~~~~l~~L~L~~L~l~~n~l~~~~------~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 200 (520)
T 2z7x_B 130 ---SSVLPIAHLNISKVLLVLGETYGEK------EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200 (520)
T ss_dssp ---GGGGGGTTSCEEEEEEEECTTTTSS------CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred ---hhccccccceeeEEEeecccccccc------cccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence 123334444 55555555441100 0111222222 22345566666665555443333356777777776
Q ss_pred c-------ccccCCCCCCCCCcccEEeccccccCCCCCcccc---cCCCCcEEEeeCCcccCCCCCCC-----CCCCCCc
Q 042568 318 L-------IYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELC---LMSKLERVYLSNNSLSGEIPSAF-----GDIPHLG 382 (983)
Q Consensus 318 ~-------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~ 382 (983)
. +.+.+| .++.+++|+.|++++|.+++..+..+. ..++|++|++++|.+.+.+|..+ +.+++|+
T Consensus 201 ~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~ 279 (520)
T 2z7x_B 201 LEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279 (520)
T ss_dssp CSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEE
T ss_pred ccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeE
Confidence 5 555555 666777777777777776643222211 23567777777777777777776 7777777
Q ss_pred EEEccCccccCcCc-ccccCc---ccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceecc
Q 042568 383 LLDLSKNKLSGSIP-DSFANL---SQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLN 458 (983)
Q Consensus 383 ~L~Ls~N~l~~~~~-~~~~~l---~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~ 458 (983)
.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++.+|..+..+++|+. |+
T Consensus 280 ~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~ 354 (520)
T 2z7x_B 280 IHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELET-LI 354 (520)
T ss_dssp EEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE-EE
T ss_pred eccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCE-EE
Confidence 777777777 344 444444 55777777777765322 1256677777777777777777777777777775 77
Q ss_pred ccCCCCCC--CCccccccccccccccccccccccCCCcc-cccccccceEEeCCCcccccccccccCCCCccEEecCCcc
Q 042568 459 LSSNHLDG--PLPLELSKMDMVLAIDLSFNNLSGSIPPQ-LGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNR 535 (983)
Q Consensus 459 l~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~ 535 (983)
+++|++++ .+|..+..+++|+.|||++|++++.+|.. +..+++|+.|++++|++++.+|..+. ++|+.|++++|+
T Consensus 355 L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK 432 (520)
T ss_dssp CCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC
T ss_pred ccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc
Confidence 77777775 45566777777777777777777656553 66677777777777777776666554 677777777777
Q ss_pred ccCCcCccccCCCCcceEeccCCccccccCC-CCCCcccccccccCCcCccC
Q 042568 536 LFGEIPQSFQASPTLKQLNFSFNKFSGNISN-KGAFSSLTIASFQGNDGLCG 586 (983)
Q Consensus 536 l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~N~~lc~ 586 (983)
++ .+|..+..+++|++|++++|+++..++. ...+..+..+.+.+|++.|.
T Consensus 433 l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 77 6777666777777777777777755544 45566677777777777664
No 30
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=4.8e-48 Score=432.87 Aligned_cols=250 Identities=22% Similarity=0.292 Sum_probs=208.4
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
+.|+..+.||+|+||.||+|++. +|+.||||+++..... ..+.+.+|+++|++++|||||+++++|.+.+..|+||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~-~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ-RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCS-SGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchh-HHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 46888999999999999999965 6899999999765433 457799999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
|+||+|.+++.. ..+++..+..|+.||++||+|||+++ ||||||||+|||++.++.+||+|||+|+.+....
T Consensus 230 ~~gG~L~~~i~~-----~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~ 301 (423)
T 4fie_A 230 LEGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV 301 (423)
T ss_dssp CTTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC
T ss_pred CCCCcHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEecCccceECCCCC
Confidence 999999998863 45999999999999999999999996 9999999999999999999999999998765322
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHR 905 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~ 905 (983)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||... ...
T Consensus 302 -------------~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~---------- 353 (423)
T 4fie_A 302 -------------PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE-----PPL---------- 353 (423)
T ss_dssp -------------CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHH----------
T ss_pred -------------ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHH----------
Confidence 1223468999999999999999999999999999999999999998531 111
Q ss_pred CcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 906 LDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
+.+.. +........ ..+..++.++.+++.+||+.||++|||++|+++|
T Consensus 354 --~~~~~-i~~~~~~~~-----~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 354 --KAMKM-IRDNLPPRL-----KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp --HHHHH-HHHSCCCCC-----SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred --HHHHH-HHcCCCCCC-----cccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 11111 111111111 1123356789999999999999999999999986
No 31
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=6.4e-48 Score=409.72 Aligned_cols=249 Identities=25% Similarity=0.391 Sum_probs=192.8
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|++.+.||+|+||+||+|+.. +++.||||+++... ..+..+++.+|++++++++|||||++++++.+++..++||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 68999999999999999999964 78999999997553 2234678999999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+ +|+|.+++.. ..++++..+..++.|++.||+|||+++ |+||||||+|||+++++.+||+|||+|+....
T Consensus 93 Ey~-~g~L~~~l~~----~~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~ 164 (275)
T 3hyh_A 93 EYA-GNELFDYIVQ----RDKMSEQEARRFFQQIISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164 (275)
T ss_dssp ECC-CEEHHHHHHH----SCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTCCEEECCSSCC-----
T ss_pred eCC-CCCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCChHHeEECCCCCEEEeecCCCeecCC
Confidence 999 6799888864 346999999999999999999999996 99999999999999999999999999986543
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCC-CccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRA-STHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.. .....+||+.|||||++.+..+ +.++||||+||++|||++|+.||... .....
T Consensus 165 ~~--------------~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~-----~~~~~----- 220 (275)
T 3hyh_A 165 GN--------------FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE-----SIPVL----- 220 (275)
T ss_dssp ------------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHH-----
T ss_pred CC--------------ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC-----CHHHH-----
Confidence 21 1223579999999999998876 58999999999999999999998631 11111
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
.+....... ..| ...+.++.+++.+|++.||++|||++|+++|=.
T Consensus 221 -------~~~i~~~~~--~~p-------~~~s~~~~~li~~~L~~dP~~R~s~~eil~hpw 265 (275)
T 3hyh_A 221 -------FKNISNGVY--TLP-------KFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDW 265 (275)
T ss_dssp -------HHHHHHTCC--CCC-------TTSCHHHHHHHHHHSCSSGGGSCCHHHHHHCHH
T ss_pred -------HHHHHcCCC--CCC-------CCCCHHHHHHHHHHccCChhHCcCHHHHHcCcc
Confidence 111111111 111 124567899999999999999999999998643
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.9e-47 Score=465.98 Aligned_cols=445 Identities=22% Similarity=0.281 Sum_probs=353.3
Q ss_pred CCCcEEeCcCCcCCCCCccccCCCCCCCEEec-cCccCCCCchhhhccc----c-----cccEE------ec-cCccccc
Q 042568 101 SSLIVLDLSKNFFQGHIPAELGSLIRLKQLSL-SWNSLQGKIPSQLGSL----H-----QLEYL------DL-GNNKLVG 163 (983)
Q Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L-s~n~l~~~~p~~~~~L----~-----~L~~L------~L-s~N~l~~ 163 (983)
..++.|+|++|++.|.+|+.|++|++|++|+| ++|.++|..|.....+ + .++.. +. ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 56889999999999999999999999999999 8888877644321111 0 00000 00 0000000
Q ss_pred cc-------CC--cccccCCCcccceeeccc--ccccCCCCCcccccccccceeecccCcccc-----------------
Q 042568 164 EI-------PI--PIFCSNSSTSLQYIDLSN--NSLTGEIPLKNECELRNLRFLLLWSNRLVG----------------- 215 (983)
Q Consensus 164 ~~-------p~--~~~~~~~l~~L~~L~Ls~--N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~----------------- 215 (983)
.+ |. .+. ......++.+.++. |.+++ +|. .+.++++|++|+|++|++++
T Consensus 403 l~~~~l~~~~~~~~i~-~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIK-KDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHTCTTSCCCC-CCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHhhhCccccccc-cccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 00 00 000 01233455555554 77776 664 46678888888888888887
Q ss_pred ccchhhh--ccCCcceecccccccccccchhhhcCCCCccEEEccccc-ccc--CCCCCCCcccccccCCCCCccEEEcc
Q 042568 216 QVPQALA--NSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYND-FVS--HDGNTNLEPFFASLANSSNFQELELA 290 (983)
Q Consensus 216 ~~p~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--~~~~~~~~~~~~~l~~l~~L~~L~L~ 290 (983)
.+|..++ ++++|++|+|++|++.+.+|. .+..+++|++|+|++|+ ++. ++. .+..+...+..+++|++|+|+
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~--~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKA--DWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHH--HHHHHHHCTTTTTTCCEEECC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchH--HHHhhhhcccccCCccEEEee
Confidence 4899987 999999999999999999985 46899999999999998 642 110 000111134456799999999
Q ss_pred CCcccccCCc--cccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCC-CcEEEeeCCcc
Q 042568 291 GNNLGGMIPS--IIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSK-LERVYLSNNSL 367 (983)
Q Consensus 291 ~n~l~~~~p~--~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~N~l 367 (983)
+|+++ .+|. .++.+ ++|+.|+|++|.++ .+| .++.+++|+.|+|++|+++ .+|..+..+++ |+.|+|++|.+
T Consensus 557 ~N~L~-~ip~~~~l~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp SSCCC-BCCCHHHHTTC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred CCcCC-ccCChhhhhcC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence 99999 8888 88888 48999999999999 888 9999999999999999999 88999999999 99999999999
Q ss_pred cCCCCCCCCCCCC--CcEEEccCccccCcCcccc---c--CcccchhhcccCccCCCCCcccc-cCCCCCCEEEccCccc
Q 042568 368 SGEIPSAFGDIPH--LGLLDLSKNKLSGSIPDSF---A--NLSQLRRLLLYGNHLSGTIPSSL-GKCVNLEILDLSHNKI 439 (983)
Q Consensus 368 ~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~~~~~---~--~l~~L~~L~l~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l 439 (983)
+ .+|..+..++. |+.|+|++|++.+.+|... . .+++|+.|+|++|.++ .+|..+ ..+++|+.|+|++|++
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 9 78888887765 9999999999998776432 2 3458999999999999 566654 5899999999999999
Q ss_pred cCcCCccccCC--------CccceeccccCCCCCCCCccccc--cccccccccccccccccCCCcccccccccceEEeCC
Q 042568 440 SGIIPSDVAGL--------RSLKLYLNLSSNHLDGPLPLELS--KMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSG 509 (983)
Q Consensus 440 ~~~~p~~~~~l--------~~L~~~L~l~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 509 (983)
+ .+|..+... ++|+. |+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++
T Consensus 710 ~-~ip~~~~~~~~~~l~nl~~L~~-L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 710 T-SIPENSLKPKDGNYKNTYLLTT-IDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp S-CCCTTSSSCTTSCCTTGGGCCE-EECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred C-ccChHHhccccccccccCCccE-EECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 9 666654433 28986 999999999 7888887 99999999999999997 899999999999999976
Q ss_pred ------CcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccC
Q 042568 510 ------NSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNIS 565 (983)
Q Consensus 510 ------N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 565 (983)
|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 889999999999999999999999999 79999876 699999999999976554
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.9e-48 Score=457.32 Aligned_cols=443 Identities=21% Similarity=0.217 Sum_probs=331.6
Q ss_pred CeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEec
Q 042568 77 NKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDL 156 (983)
Q Consensus 77 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~L 156 (983)
.+++.|+|++|.+.+..|..+.++++|++|+|++|++++..|..|+++++|++|+|++|+|+ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57999999999999888889999999999999999999888999999999999999999999 78877 8999999999
Q ss_pred cCccccc-ccCCcccccCCCcccceeecccccccCCCCCccccccccc--ceeecccCcc--ccccchhhhccC-Cccee
Q 042568 157 GNNKLVG-EIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNL--RFLLLWSNRL--VGQVPQALANSS-KLEWL 230 (983)
Q Consensus 157 s~N~l~~-~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L--~~L~L~~N~l--~~~~p~~l~~l~-~L~~L 230 (983)
++|++++ .+|..+. .+++|++|++++|.+++ ..+..+++| ++|++++|++ .+..|..+..+. +...+
T Consensus 98 ~~N~l~~~~~p~~~~---~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 98 SFNAFDALPICKEFG---NMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp CSSCCSSCCCCGGGG---GCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred cCCccccccchhhhc---cCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence 9999986 4676665 78999999999999985 345678888 9999999999 888999888876 45577
Q ss_pred cccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCcccccc--ccC
Q 042568 231 DLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDL--STN 308 (983)
Q Consensus 231 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~~ 308 (983)
++++|++.+.++...+..+++|+.|++++|.-.. .........+.+..+++|++|++++|.+++..+..+... .++
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN--KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT--TTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred EeccCcchhhhhhhhhhcccceeecccccccccc--ccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 8999999988998889999999999999986100 000111223467888999999999998886433322210 137
Q ss_pred eeEEEccCccccccCCCCC-----CCCCcccEEeccccccCCCCC-cccccC---CCCcEEEeeCCcccCCCCCCCCCCC
Q 042568 309 LVQIHLDCNLIYGKIPPHI-----SNLVNLTLLNLSSNLLNGTIP-HELCLM---SKLERVYLSNNSLSGEIPSAFGDIP 379 (983)
Q Consensus 309 L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~l~~l---~~L~~L~L~~N~l~~~~p~~~~~l~ 379 (983)
|++|++++|.++|.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..++
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~ 324 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKIS 324 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCC
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCC
Confidence 8999999999988888888 8889999999999988 455 444444 67888888888876432 126777
Q ss_pred CCcEEEccCccccCcCcccccCcccchhhcccCccCCC--CCcccccCCCCCCEEEccCccccCcCCcc-ccCCCcccee
Q 042568 380 HLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSG--TIPSSLGKCVNLEILDLSHNKISGIIPSD-VAGLRSLKLY 456 (983)
Q Consensus 380 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~~ 456 (983)
+|+.|++++|++++..|..++++++|+.|++++|++++ .+|..+..+++|++|++++|++++.+|.. +..+++|+.
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~- 403 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS- 403 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE-
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE-
Confidence 88888888888887777777777788888888887775 44566777777777777777777644432 455555553
Q ss_pred ccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccc
Q 042568 457 LNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRL 536 (983)
Q Consensus 457 L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 536 (983)
|++++|++++. +|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|++
T Consensus 404 L~Ls~N~l~~~------------------------~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 404 LNMSSNILTDT------------------------IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp EECCSSCCCGG------------------------GGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred EECcCCCCCcc------------------------hhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence 55555555544 443332 45555555555555 4555555566666666666666
Q ss_pred cCCcCcc-ccCCCCcceEeccCCcccccc
Q 042568 537 FGEIPQS-FQASPTLKQLNFSFNKFSGNI 564 (983)
Q Consensus 537 ~~~~p~~-~~~l~~L~~l~l~~N~l~~~~ 564 (983)
+ .+|.. |..+++|++|++++|++++..
T Consensus 457 ~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 457 K-SVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred C-ccCHHHhccCCcccEEECcCCCCcccC
Confidence 5 34443 556666666666666665544
No 34
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=7e-48 Score=415.13 Aligned_cols=249 Identities=25% Similarity=0.322 Sum_probs=197.2
Q ss_pred CCCCCCCccccCCcEeEEEEEEC----CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ----DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~----~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 741 (983)
++|++.+.||+|+||+||+|+.. +++.||||+++.... .....++.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 46889999999999999999863 467899999965432 2234578899999999999999999999999999999
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
||||++||+|.+++.. ...+++..+..++.|++.||+|||+++ |+||||||+|||+++++.+||+|||+|+..
T Consensus 104 vmEy~~gg~L~~~l~~----~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~ 176 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSK----EVMFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKES 176 (304)
T ss_dssp EECCCTTCEEHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTSCEEEESSEEEEC-
T ss_pred EEEcCCCCCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHeEEcCCCCEEecccccceec
Confidence 9999999999999975 346999999999999999999999996 999999999999999999999999999865
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
.... ......+||+.|||||++.+..|+.++||||+||++|||++|+.||... +..+
T Consensus 177 ~~~~-------------~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~-----~~~~----- 233 (304)
T 3ubd_A 177 IDHE-------------KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK-----DRKE----- 233 (304)
T ss_dssp -----------------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHH-----
T ss_pred cCCC-------------ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc-----CHHH-----
Confidence 4322 1223468999999999999999999999999999999999999998632 1111
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHHH
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPS-----MLDVAHE 961 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-----~~evl~~ 961 (983)
.......... ..| ..++.++.+++.+||+.||++||| ++|+++|
T Consensus 234 -------~~~~i~~~~~--~~p-------~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~H 282 (304)
T 3ubd_A 234 -------TMTMILKAKL--GMP-------QFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRH 282 (304)
T ss_dssp -------HHHHHHHCCC--CCC-------TTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTS
T ss_pred -------HHHHHHcCCC--CCC-------CcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcC
Confidence 1122111111 111 124567899999999999999998 4677764
No 35
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=4.9e-47 Score=410.94 Aligned_cols=262 Identities=21% Similarity=0.346 Sum_probs=193.0
Q ss_pred CCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCC---------
Q 042568 668 GFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPD--------- 737 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--------- 737 (983)
+|++.+.||+|+||+||+|++. +|+.||||+++....+...+++.+|++++++++|||||++++++...+
T Consensus 6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~ 85 (299)
T 4g31_A 6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSS 85 (299)
T ss_dssp HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC---------
T ss_pred hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccC
Confidence 5788999999999999999965 689999999987665556678999999999999999999999986544
Q ss_pred ---ceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcc
Q 042568 738 ---FKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVAD 814 (983)
Q Consensus 738 ---~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~D 814 (983)
..|+||||+++|+|.+++..... ....++..++.|+.|+++||+|||+++ |+||||||+|||++.++.+||+|
T Consensus 86 ~~~~l~ivmE~~~gg~L~~~l~~~~~-~~~~~~~~~~~i~~qi~~al~ylH~~~---IiHRDlKp~NILl~~~~~vKl~D 161 (299)
T 4g31_A 86 PKVYLYIQMQLCRKENLKDWMNGRCT-IEERERSVCLHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGD 161 (299)
T ss_dssp -CEEEEEEEECCCSCCHHHHHHTCCS-GGGSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECC
T ss_pred CCcEEEEEEecCCCCcHHHHHHhcCC-CChhHHHHHHHHHHHHHHHHHHHHHCc---CccccCcHHHeEECCCCcEEEcc
Confidence 36899999999999999975432 234577788999999999999999996 99999999999999999999999
Q ss_pred ccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCch
Q 042568 815 FGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSL 894 (983)
Q Consensus 815 fgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l 894 (983)
||+|+............. ...........+||+.|||||++.+..|+.++||||+||++|||++ ||.... ..
T Consensus 162 FGla~~~~~~~~~~~~~~-~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~----~~ 233 (299)
T 4g31_A 162 FGLVTAMDQDEEEQTVLT-PMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM----ER 233 (299)
T ss_dssp CCCC---------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH----HH
T ss_pred CccceecCCCcccccccc-ccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc----HH
Confidence 999998765432211100 0011122334679999999999999999999999999999999996 764210 00
Q ss_pred HHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 895 HEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
. ..+........| ..+.+....+.+++.+|++.||++|||+.|++++
T Consensus 234 ~----------------~~~~~~~~~~~p----~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h 280 (299)
T 4g31_A 234 V----------------RTLTDVRNLKFP----PLFTQKYPCEYVMVQDMLSPSPMERPEAINIIEN 280 (299)
T ss_dssp H----------------HHHHHHHTTCCC----HHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred H----------------HHHHHHhcCCCC----CCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 0 001111111111 1234455667889999999999999999999885
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.9e-44 Score=435.48 Aligned_cols=521 Identities=23% Similarity=0.199 Sum_probs=378.9
Q ss_pred ccccCCCCCCC---CCCccee----eEEECCC---------CCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCC
Q 042568 51 EHALESWNSTD---VHVCNWS----GVKCNNS---------RNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQ 114 (983)
Q Consensus 51 ~~~l~sw~~~~---~~~c~w~----gv~c~~~---------~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~ 114 (983)
...+++|+.+- .++|.|. .|.|... ...++.|||++|.|++..+.+|.++++|++|||++|+|+
T Consensus 10 ~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~ 89 (635)
T 4g8a_A 10 DDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 89 (635)
T ss_dssp ---------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred cchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC
Confidence 34555665321 1235543 4678642 236899999999999777778999999999999999999
Q ss_pred CCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCC
Q 042568 115 GHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPL 194 (983)
Q Consensus 115 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~ 194 (983)
+..|..|+++++|++|+|++|+|++..+..|++|++|++|+|++|++++ +|...+ ..+++|++|+|++|.+++....
T Consensus 90 ~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~~L~Ls~N~l~~~~~~ 166 (635)
T 4g8a_A 90 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPI--GHLKTLKELNVAHNLIQSFKLP 166 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCC--TTCTTCCEEECCSSCCCCCCCC
T ss_pred CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhh--hcCcccCeeccccCccccCCCc
Confidence 7777789999999999999999997677789999999999999999984 444322 4889999999999999865444
Q ss_pred cccccccccceeecccCccccccchhhhccCCcc----eecccccccccccchhhhcCCCCccEEEccccccccC-----
Q 042568 195 KNECELRNLRFLLLWSNRLVGQVPQALANSSKLE----WLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSH----- 265 (983)
Q Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----- 265 (983)
..+..+++|++|+|++|++++..|..|..+.+++ .++++.|.++ .++...+. ...++.|++++|.....
T Consensus 167 ~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~ 244 (635)
T 4g8a_A 167 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTC 244 (635)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSSHHHHHHH
T ss_pred hhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhhcccccccccchh
Confidence 5677899999999999999998898888876654 5778888887 45555443 34566777776632110
Q ss_pred ----C-------------CCCCCc-ccccccCCCCCccEEEccCCccccc---CCccccccccCeeEEEccCccccccCC
Q 042568 266 ----D-------------GNTNLE-PFFASLANSSNFQELELAGNNLGGM---IPSIIGDLSTNLVQIHLDCNLIYGKIP 324 (983)
Q Consensus 266 ----~-------------~~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~~L~~L~L~~N~l~~~~p 324 (983)
. ....+. .....+.....+...++..+..... ++..+.. ..+++.+++..|.+...
T Consensus 245 ~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~-- 321 (635)
T 4g8a_A 245 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNC-LTNVSSFSLVSVTIERV-- 321 (635)
T ss_dssp HHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGG-GTTCSEEEEESCEEEEC--
T ss_pred hcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhh-hcccccccccccccccc--
Confidence 0 000000 0001112222333333332222111 1111222 24567777777766543
Q ss_pred CCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccC--cCcccccCc
Q 042568 325 PHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSG--SIPDSFANL 402 (983)
Q Consensus 325 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l 402 (983)
..+....+|+.|++++|.+.+..+ ..+..|+.+++++|.+.... .+..+++|+.|++++|.+.. ..+..+..+
T Consensus 322 ~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 396 (635)
T 4g8a_A 322 KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 396 (635)
T ss_dssp GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSC
T ss_pred cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhh
Confidence 235556678888888888775433 24567888888888776433 35578889999999998853 355667778
Q ss_pred ccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCC-ccccCCCccceeccccCCCCCCCCccccccccccccc
Q 042568 403 SQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIP-SDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAI 481 (983)
Q Consensus 403 ~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L 481 (983)
.+|+.|++..|.+. ..+..+..+++|+.+++++|+.....+ ..+..+..++. ++++.|.+++..|..+..++.|+.|
T Consensus 397 ~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~-l~ls~n~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 397 ISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-LDISHTHTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp SCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE-EECTTSCCEECCTTTTTTCTTCCEE
T ss_pred hhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccccc-ccccccccccccccccccchhhhhh
Confidence 88999999888877 455667888999999999888776554 45677888885 9999999998888899999999999
Q ss_pred cccccccc-cCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCcc
Q 042568 482 DLSFNNLS-GSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKF 560 (983)
Q Consensus 482 ~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l 560 (983)
+|++|++. +.+|..|..+++|+.|+|++|+|++.+|..|.++++|+.|+|++|+|++..|..|.++++|++|++++|++
T Consensus 475 ~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred hhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence 99999754 45678889999999999999999988899999999999999999999988888899999999999999999
Q ss_pred ccccCCC-CCC-cccccccccCCcCccC
Q 042568 561 SGNISNK-GAF-SSLTIASFQGNDGLCG 586 (983)
Q Consensus 561 ~~~~~~~-~~~-~~~~~~~~~~N~~lc~ 586 (983)
++.+|.. ..+ .++..+.+.+||+.|.
T Consensus 555 ~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 555 MTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9988763 334 5678888999999884
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-44 Score=431.96 Aligned_cols=455 Identities=21% Similarity=0.206 Sum_probs=330.5
Q ss_pred EEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCc
Q 042568 80 VELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNN 159 (983)
Q Consensus 80 ~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N 159 (983)
..+|++++++++ +|..+. ++|++|+|++|.+++..|..|+++++|++|+|++|+|++..|..|+++++|++|||++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 678889998884 776654 78999999999999777788999999999999999999877888999999999999999
Q ss_pred ccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCc--ceeccccccc
Q 042568 160 KLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKL--EWLDLESNMF 237 (983)
Q Consensus 160 ~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L--~~L~Ls~N~l 237 (983)
+++ .+|.. .+++|++|+|++|++++.-....+.++++|++|++++|++++. .+..+++| ++|+|++|++
T Consensus 111 ~l~-~lp~~-----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQ-NISCC-----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCC-EECSC-----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred cCC-ccCcc-----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 998 67765 5789999999999988532235678899999999999998864 34555555 9999999988
Q ss_pred --ccccchhhhcCCC-CccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCc-----ccccCCccccccccCe
Q 042568 238 --SGELPSEIISKMP-QLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNN-----LGGMIPSIIGDLSTNL 309 (983)
Q Consensus 238 --~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-----l~~~~p~~~~~l~~~L 309 (983)
++..|.. +..+. ..-.++++.|.+...- ....+.++++|+.|++++|+ +.+.+ ..+..+ ++|
T Consensus 182 ~~~~~~~~~-l~~l~~~~l~l~l~~n~~~~~~-------~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~~l-~~L 251 (562)
T 3a79_B 182 HIKGGETES-LQIPNTTVLHLVFHPNSLFSVQ-------VNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELTRG-PTL 251 (562)
T ss_dssp CCCSSSCCE-EEECCEEEEEEEECSSSCCCCC-------CEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHHSC-SSC
T ss_pred cccccCccc-ccccCcceEEEEecCccchhhh-------hhhcccccceEEEecccccccccchHHHHH-HHHhcc-Ccc
Confidence 6555543 33333 1224566766654311 11345566778888888774 22111 223333 356
Q ss_pred eEEEccCcccccc----CCCCCCCCCcccEEeccccccCCCCCccc-----ccCCCCcEEEeeCCcccCCCC-CCCCC--
Q 042568 310 VQIHLDCNLIYGK----IPPHISNLVNLTLLNLSSNLLNGTIPHEL-----CLMSKLERVYLSNNSLSGEIP-SAFGD-- 377 (983)
Q Consensus 310 ~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~p-~~~~~-- 377 (983)
+.|+++++.+.+. +++.+ ..++|++|++++|+++|.+|..+ ..++.|+.++++.|.+ .+| ..+..
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~ 328 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVF 328 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhh
Confidence 6666666655432 11111 22477888888888877777766 5566666666666665 233 22221
Q ss_pred -CCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCc--CCccccCCCccc
Q 042568 378 -IPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGI--IPSDVAGLRSLK 454 (983)
Q Consensus 378 -l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~ 454 (983)
..+|+.|++++|++.... ....+++|+.|++++|.+++.+|..+..+++|+.|++++|++++. +|..+..+++|+
T Consensus 329 ~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 329 AEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp HTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred ccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence 146788888888775322 125777888888888888877788888888888888888888763 345677888888
Q ss_pred eeccccCCCCCCCCcc-ccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCC
Q 042568 455 LYLNLSSNHLDGPLPL-ELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSS 533 (983)
Q Consensus 455 ~~L~l~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~ 533 (983)
. |++++|++++.+|. .+..+++|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|+.|+|++
T Consensus 407 ~-L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 407 T-LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp E-EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCS
T ss_pred E-EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCC
Confidence 5 88888888874554 477888888888998888877776655 68999999999998 6777777899999999999
Q ss_pred ccccCCcCcc-ccCCCCcceEeccCCccccccCC
Q 042568 534 NRLFGEIPQS-FQASPTLKQLNFSFNKFSGNISN 566 (983)
Q Consensus 534 N~l~~~~p~~-~~~l~~L~~l~l~~N~l~~~~~~ 566 (983)
|+++ .+|.. |..+++|++|++++|+++|..+.
T Consensus 483 N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 483 NQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9998 56665 88999999999999999887653
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.5e-44 Score=426.75 Aligned_cols=453 Identities=20% Similarity=0.222 Sum_probs=372.8
Q ss_pred CCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCccccee
Q 042568 102 SLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYI 181 (983)
Q Consensus 102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L 181 (983)
..+++|+++|+++ .+|..+. ++|++|+|++|.|++..|..|+++++|++|+|++|++++..|..+. .+++|++|
T Consensus 32 ~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L 105 (562)
T 3a79_B 32 LESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL---FNQDLEYL 105 (562)
T ss_dssp -CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT---TCTTCCEE
T ss_pred CCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC---CCCCCCEE
Confidence 3489999999999 5887765 8999999999999988889999999999999999999966666554 89999999
Q ss_pred ecccccccCCCCCcccccccccceeecccCcccc-ccchhhhccCCcceecccccccccccchhhhcCCCCc--cEEEcc
Q 042568 182 DLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVG-QVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQL--QFLYLS 258 (983)
Q Consensus 182 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L--~~L~Ls 258 (983)
+|++|.++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|+|++|++++ . .+..+++| ++|+|+
T Consensus 106 ~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 106 DVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp ECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCEEEEEEE
T ss_pred ECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-C---chhhhhhceeeEEEee
Confidence 99999998 67765 79999999999999997 457899999999999999999984 2 24455555 999999
Q ss_pred cccc--ccCCCCCCCcccccccCCCC-CccEEEccCCcccccCCccccccccCeeEEEccCcc-----ccccCCCCCCCC
Q 042568 259 YNDF--VSHDGNTNLEPFFASLANSS-NFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNL-----IYGKIPPHISNL 330 (983)
Q Consensus 259 ~N~l--~~~~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~-----l~~~~p~~l~~l 330 (983)
+|.+ .... +..+..+. ..-.+++++|.+.+.++.....-.++|+.+++++|. +.+. +..+..+
T Consensus 178 ~n~l~~~~~~--------~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l 248 (562)
T 3a79_B 178 LVSYHIKGGE--------TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRG 248 (562)
T ss_dssp ESSCCCCSSS--------CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSC
T ss_pred cccccccccC--------cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhcc
Confidence 9988 4321 12233322 222668899999987777655555789999999985 2222 2356778
Q ss_pred CcccEEeccccccCCCC----CcccccCCCCcEEEeeCCcccCCCCCCC-----CCCCCCcEEEccCccccCcCc-cccc
Q 042568 331 VNLTLLNLSSNLLNGTI----PHELCLMSKLERVYLSNNSLSGEIPSAF-----GDIPHLGLLDLSKNKLSGSIP-DSFA 400 (983)
Q Consensus 331 ~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~~-~~~~ 400 (983)
++|+.|+++++.+++.. +..+ ..++|++|++++|.+++.+|..+ ..++.|+.++++.|.+ .+| ..+.
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~ 325 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALY 325 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHH
T ss_pred CcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhh
Confidence 88999999888876432 2222 34589999999999999999887 7788888888888887 344 3333
Q ss_pred Cc---ccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCC--Cccccccc
Q 042568 401 NL---SQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGP--LPLELSKM 475 (983)
Q Consensus 401 ~l---~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~--~p~~~~~l 475 (983)
.+ .+|+.|++++|.+.... ....+++|++|++++|++++.+|..+..+++|+. |++++|++++. +|..+..+
T Consensus 326 ~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~~~l 402 (562)
T 3a79_B 326 SVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT-LILQRNGLKNFFKVALMTKNM 402 (562)
T ss_dssp HHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCE-EECCSSCCCBTTHHHHTTTTC
T ss_pred hhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCE-EECCCCCcCCcccchhhhcCC
Confidence 32 57999999999987432 1268899999999999999999999999999996 99999999973 45779999
Q ss_pred cccccccccccccccCCCc-ccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEe
Q 042568 476 DMVLAIDLSFNNLSGSIPP-QLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLN 554 (983)
Q Consensus 476 ~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ 554 (983)
++|+.|+|++|++++.+|. .+..+++|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++|+
T Consensus 403 ~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~ 479 (562)
T 3a79_B 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELN 479 (562)
T ss_dssp TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEE
T ss_pred CCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEE
Confidence 9999999999999986765 478899999999999999988887665 79999999999998 7888888999999999
Q ss_pred ccCCccccccCC-CCCCcccccccccCCcCccC
Q 042568 555 FSFNKFSGNISN-KGAFSSLTIASFQGNDGLCG 586 (983)
Q Consensus 555 l~~N~l~~~~~~-~~~~~~~~~~~~~~N~~lc~ 586 (983)
+++|++++.++. ...+..+..+.+.+|++.|.
T Consensus 480 L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 480 VASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 999999976665 67788889999999999985
No 39
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-44 Score=407.12 Aligned_cols=276 Identities=22% Similarity=0.262 Sum_probs=205.3
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-chhHHHHHHHHHHHhcCCCCccceeeEEec------CCc
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-EITGSFKRECQILKRIRHRNLIRIITICSK------PDF 738 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~ 738 (983)
++|.+.+.||+|+||+||+|++. +|+.||||+++..... ...+++.+|+++|++++|||||++++++.. .+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57889999999999999999965 7899999999655432 345678899999999999999999998754 356
Q ss_pred eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccc
Q 042568 739 KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIA 818 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla 818 (983)
.|+|||||+ |+|.+++.. ...+++..+..++.||+.||+|||+++ ||||||||+|||++.++.+||+|||+|
T Consensus 134 ~~ivmE~~~-g~L~~~i~~----~~~l~~~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NIl~~~~~~~Ki~DFGla 205 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHS----SQPLTLEHVRYFLYQLLRGLKYMHSAQ---VIHRDLKPSNLLVNENCELKIGDFGMA 205 (398)
T ss_dssp EEEEEECCS-EEHHHHHTS----SSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred EEEEEeCCC-CCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCc---CcCCCcCccccccCCCCCEEEeeccee
Confidence 799999996 678888864 356999999999999999999999996 999999999999999999999999999
Q ss_pred ccccCCcccccccCCCCccccccCccccccccccccccCCC-CCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHH
Q 042568 819 KLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK-RASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEW 897 (983)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~ 897 (983)
+.+...... ........+||+.|||||++.+. .++.++||||+||++|||++|+.||.... ....+..+
T Consensus 206 ~~~~~~~~~---------~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~-~~~~l~~I 275 (398)
T 4b99_A 206 RGLCTSPAE---------HQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKN-YVHQLQLI 275 (398)
T ss_dssp BCC----------------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSS-HHHHHHHH
T ss_pred eecccCccc---------cccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCC-HHHHHHHH
Confidence 876432111 01223446899999999998875 56999999999999999999999986321 01111122
Q ss_pred HHhhCCCC--C-c----HHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 898 VKRHYPHR--L-D----PIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 898 ~~~~~~~~--~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
........ . . ......+.. .+...+......+.....++.+|+.+|++.||++|||++|+++|
T Consensus 276 ~~~~g~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 345 (398)
T 4b99_A 276 MMVLGTPSPAVIQAVGAERVRAYIQS-LPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH 345 (398)
T ss_dssp HHHHCCCCGGGTC-----CHHHHHHS-SCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred HHhcCCCChHHhhhhhhhhhhhhhhc-CCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 22111111 0 0 001111111 11111211222223346788999999999999999999999986
No 40
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=4.6e-44 Score=398.42 Aligned_cols=284 Identities=22% Similarity=0.281 Sum_probs=203.1
Q ss_pred HHhCCCCCCCccccCCcEeEEEEEEC----CCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCc
Q 042568 664 EATGGFCPSSLIGSGRFGHVYKGVLQ----DNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPDF 738 (983)
Q Consensus 664 ~~~~~f~~~~~iG~G~~g~Vy~~~~~----~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 738 (983)
...++|.+.++||+|+||+||+|+.+ +++.||||.+.... ...++.+|+++++.+ +||||+++++++.+.+.
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~---~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~ 94 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS---HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDH 94 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS---CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc---CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCE
Confidence 34578999999999999999999853 46789999986543 246788999999998 69999999999999999
Q ss_pred eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCC-CCEEEccccc
Q 042568 739 KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDED-LTALVADFGI 817 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~-~~~kl~Dfgl 817 (983)
.++||||+++|+|.+++. .+++.+++.++.|+++||+|||+++ |+||||||+|||++.+ +.+||+|||+
T Consensus 95 ~~lvmE~~~g~~L~~~~~-------~l~~~~~~~~~~qll~al~ylH~~g---IiHRDiKPeNiLl~~~~~~~kl~DFGl 164 (361)
T 4f9c_A 95 VVIAMPYLEHESFLDILN-------SLSFQEVREYMLNLFKALKRIHQFG---IVHRDVKPSNFLYNRRLKKYALVDFGL 164 (361)
T ss_dssp EEEEEECCCCCCHHHHHT-------TCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred EEEEEeCCCcccHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCcCCHHHeEEeCCCCeEEECcCCC
Confidence 999999999999999874 3889999999999999999999996 9999999999999876 7999999999
Q ss_pred cccccCCcccccccCC---------------CCccccccCccccccccccccccCCC-CCCccchhHHHHHHHHHHHhCC
Q 042568 818 AKLVKGIDESVNCAND---------------SMSFTSTDGLLCGSVGYIAPEYGMGK-RASTHGDVYSFGVLLLEIVTGR 881 (983)
Q Consensus 818 a~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~k~Dv~SlG~il~elltg~ 881 (983)
|+...+.......... ...........+||+.|||||++.+. .|+.++||||+||++|||++|+
T Consensus 165 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~ 244 (361)
T 4f9c_A 165 AQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGR 244 (361)
T ss_dssp CEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTC
T ss_pred CcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCC
Confidence 9876543211100000 00001122345799999999999875 5899999999999999999999
Q ss_pred CCCCcccCCCCchHHHHHh---------------------hCCCC-CcHHHHHHHhhcCCC--------CCccccccchH
Q 042568 882 RPTDVLFHDGSSLHEWVKR---------------------HYPHR-LDPIVEKAIAKYAPQ--------HMPIYYNKVWS 931 (983)
Q Consensus 882 ~p~~~~~~~~~~l~~~~~~---------------------~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 931 (983)
.||.....+...+..+... ..+.. .....+. +...... .........|.
T Consensus 245 ~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~ 323 (361)
T 4f9c_A 245 YPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCER-LRGMDSSTPKLTSDIQGHATNLEGWN 323 (361)
T ss_dssp SSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHH-HC----------------------CT
T ss_pred CCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHh-hccccccccccccccccccccccccc
Confidence 9985322111111111110 00100 1111111 1000000 00000112234
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 932 DVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 932 ~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
..+.++.+|+.+|++.||++|||++|+++|
T Consensus 324 ~is~~a~DLl~~lL~~dP~~R~ta~eaL~H 353 (361)
T 4f9c_A 324 EVPDEAYDLLDKLLDLNPASRITAEEALLH 353 (361)
T ss_dssp TCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred cCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 456788999999999999999999999875
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.7e-43 Score=403.37 Aligned_cols=394 Identities=26% Similarity=0.317 Sum_probs=158.8
Q ss_pred cccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccc-------------cEEeccCccccc
Q 042568 97 LANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQL-------------EYLDLGNNKLVG 163 (983)
Q Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L-------------~~L~Ls~N~l~~ 163 (983)
-...++|++|++++|.+ |.+|++|+++++|++|++++|.++|.+|..++++++| ++|++++|.++
T Consensus 7 ~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~- 84 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS- 84 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-
T ss_pred ccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-
Confidence 33457788888888888 6888888888888888888888888888888887776 56666666655
Q ss_pred ccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccccccch
Q 042568 164 EIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPS 243 (983)
Q Consensus 164 ~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 243 (983)
.+|. ..++|++|++++|.+++ +|. .+++|++|++++|++++. |.. .++|++|++++|++++ +|
T Consensus 85 ~lp~------~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp- 147 (454)
T 1jl5_A 85 SLPE------LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP- 147 (454)
T ss_dssp CCCS------CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-
T ss_pred cCCC------CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-
Confidence 2333 12455556666665554 442 135555555555555531 111 1455555555555552 44
Q ss_pred hhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccC
Q 042568 244 EIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKI 323 (983)
Q Consensus 244 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~ 323 (983)
+ +..+++|++|++++|++..++. ...+|++|++++|++++ +
T Consensus 148 ~-~~~l~~L~~L~l~~N~l~~lp~------------~~~~L~~L~L~~n~l~~--------------------------l 188 (454)
T 1jl5_A 148 E-LQNSSFLKIIDVDNNSLKKLPD------------LPPSLEFIAAGNNQLEE--------------------------L 188 (454)
T ss_dssp C-CTTCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSS--------------------------C
T ss_pred c-cCCCCCCCEEECCCCcCcccCC------------CcccccEEECcCCcCCc--------------------------C
Confidence 1 4555555555555555433211 01244555555555443 2
Q ss_pred CCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcc
Q 042568 324 PPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLS 403 (983)
Q Consensus 324 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 403 (983)
| .++++++|++|++++|++++ +|.. .++|++|++++|.++ .+| .++.+++|+.|++++|++++ +|.. ++
T Consensus 189 ~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~ 257 (454)
T 1jl5_A 189 P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PP 257 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CT
T ss_pred c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---cc
Confidence 3 34444444444444444443 2221 124444455554444 333 24444445555555554443 2221 23
Q ss_pred cchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccc-ccccccc
Q 042568 404 QLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKM-DMVLAID 482 (983)
Q Consensus 404 ~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l-~~L~~L~ 482 (983)
+|+.|++++|++++ +|.. +++|+.|++++|++++. |.. .++|+. |++++|++++ ++ .+ ++|+.|+
T Consensus 258 ~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~-L~l~~N~l~~-i~----~~~~~L~~L~ 323 (454)
T 1jl5_A 258 SLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYY-LNASSNEIRS-LC----DLPPSLEELN 323 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCE-EECCSSCCSE-EC----CCCTTCCEEE
T ss_pred ccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCE-EECcCCcCCc-cc----CCcCcCCEEE
Confidence 44444455554442 3322 23445555555544431 110 123332 4455554443 11 11 2444455
Q ss_pred ccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccC--CcCccccCC-------------
Q 042568 483 LSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFG--EIPQSFQAS------------- 547 (983)
Q Consensus 483 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~--~~p~~~~~l------------- 547 (983)
+++|++++ +|.. +++|+.|++++|++++ +|. .+++|+.|++++|++++ .+|.++.++
T Consensus 324 Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~ 395 (454)
T 1jl5_A 324 VSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELP 395 (454)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------
T ss_pred CCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccccc
Confidence 55555543 3332 2445555555555542 333 23445555555555554 444444444
Q ss_pred CCcceEeccCCcccc--ccCCCCCCcccccccccCCcCccC
Q 042568 548 PTLKQLNFSFNKFSG--NISNKGAFSSLTIASFQGNDGLCG 586 (983)
Q Consensus 548 ~~L~~l~l~~N~l~~--~~~~~~~~~~~~~~~~~~N~~lc~ 586 (983)
++|++|++++|++++ .+|. .+..+.+.+|...|.
T Consensus 396 ~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 396 QNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERVVDP 431 (454)
T ss_dssp -----------------------------------------
T ss_pred CcCCEEECCCCcCCccccchh-----hHhheeCcCcccCCc
Confidence 789999999999997 4443 233445555554443
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.8e-42 Score=381.20 Aligned_cols=293 Identities=28% Similarity=0.448 Sum_probs=215.4
Q ss_pred cccHHhHHHHHHHHHhccCCCccccCCCCCCCCCCcc--eeeEEECCCC--CeEEEEEcccCCccc--ccccccccCCCC
Q 042568 30 DQIIRDRASLVTFMSSIISAPEHALESWNSTDVHVCN--WSGVKCNNSR--NKVVELDLSARSIYG--TISPALANLSSL 103 (983)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~~l~sw~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~l~g--~~~~~l~~l~~L 103 (983)
.|.++|++||++||+++. ||. .+++|.. +.+||. |.||+|+..+ ++|+.|+|+++++.| .+|+.++++++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 478899999999999994 775 7999976 467898 9999998765 899999999999999 899999999999
Q ss_pred cEEeCcC-CcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCcccceee
Q 042568 104 IVLDLSK-NFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYID 182 (983)
Q Consensus 104 ~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~ 182 (983)
++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..|+++++|++|+|++|++++.+|..+.
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~------------ 146 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS------------ 146 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG------------
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh------------
Confidence 9999995 899989999999999999999999999988999999999999999999998877765543
Q ss_pred cccccccCCCCCcccccccccceeecccCccccccchhhhccC-CcceecccccccccccchhhhcCCCCccEEEccccc
Q 042568 183 LSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSS-KLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYND 261 (983)
Q Consensus 183 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 261 (983)
.+++|++|+|++|++++.+|..++.++ +|++|+|++|++++.+|..+
T Consensus 147 ----------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~---------------- 194 (313)
T 1ogq_A 147 ----------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF---------------- 194 (313)
T ss_dssp ----------------GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG----------------
T ss_pred ----------------cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH----------------
Confidence 456666666666666666666676666 66777777776665544322
Q ss_pred cccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEecccc
Q 042568 262 FVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSN 341 (983)
Q Consensus 262 l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 341 (983)
..+ .|++|++++|.+++..|..+..+++|++|+|++|
T Consensus 195 -----------------------------------------~~l--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 195 -----------------------------------------ANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp -----------------------------------------GGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred -----------------------------------------hCC--cccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 111 1333344444444444445555566666666666
Q ss_pred ccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCcc
Q 042568 342 LLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNH 414 (983)
Q Consensus 342 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 414 (983)
++++.+|. +..+++|++|+|++|.+++.+|..|..+++|+.|+|++|++++.+|.. ..+++|+.|++++|+
T Consensus 232 ~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 66644443 555666666666666666666666666666666666666666666654 666667777776665
No 43
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=1.5e-42 Score=385.28 Aligned_cols=295 Identities=35% Similarity=0.534 Sum_probs=236.7
Q ss_pred hcCCCCCHHHHHHHhCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceee
Q 042568 652 AKNPRVSYKQLIEATGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIIT 731 (983)
Q Consensus 652 ~~~~~~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~ 731 (983)
.....++++++...+++|...+.||+|+||.||+|...+++.||||++..........++.+|++++++++||||+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~ 94 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 94 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence 44567899999999999999999999999999999988899999999976654444557999999999999999999999
Q ss_pred EEecCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEE
Q 042568 732 ICSKPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTAL 811 (983)
Q Consensus 732 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~k 811 (983)
++...+..++||||+++|+|.+++.........+++..+..++.|+++||+|||+.+..+|+||||||+||+++.++.+|
T Consensus 95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~k 174 (326)
T 3uim_A 95 FCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAV 174 (326)
T ss_dssp EECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEE
T ss_pred EEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEE
Confidence 99999999999999999999999987655556799999999999999999999998333399999999999999999999
Q ss_pred EccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcc---c
Q 042568 812 VADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVL---F 888 (983)
Q Consensus 812 l~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~---~ 888 (983)
|+|||+++........ ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||+.. .
T Consensus 175 l~Dfg~~~~~~~~~~~------------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~ 242 (326)
T 3uim_A 175 VGDFGLAKLMDYKDTH------------VTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLAN 242 (326)
T ss_dssp ECCCSSCEECCSSSSC------------EECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTT
T ss_pred eccCccccccCccccc------------ccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCccccccccc
Confidence 9999999876532211 122346999999999998888999999999999999999999999632 1
Q ss_pred CCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 889 HDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 889 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
........|+.......... ..... ........+.+.++.+++.+|++.||++|||++||+++|+.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~~~ 312 (326)
T 3uim_A 243 DDDVMLLDWVKGLLKEKKLE-------ALVDV---DLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLA 312 (326)
T ss_dssp TSCSBHHHHHTTTTSSCCST-------TSSCT---TCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSSCS
T ss_pred ccchhHHHHHHHHhhchhhh-------hhcCh---hhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcchh
Confidence 23344555554433322100 00000 011122356788999999999999999999999999999875433
No 44
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=1.3e-41 Score=376.84 Aligned_cols=288 Identities=32% Similarity=0.533 Sum_probs=228.8
Q ss_pred CCCHHHHHHHhCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEec
Q 042568 656 RVSYKQLIEATGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSK 735 (983)
Q Consensus 656 ~~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 735 (983)
++.+.++..++++|...+.||+|+||.||+|.+.+++.||||++..... ...+.+.+|++++++++||||+++++++..
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 106 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESS-QGIEEFETEIETLSFCRHPHLVSLIGFCDE 106 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCS-SHHHHHHHHHHGGGSCCCTTBCCEEEECCC
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccCh-HHHHHHHHHHHHHHhCCCCCEeeEEEEEcC
Confidence 3444455667889999999999999999999988899999999865433 346789999999999999999999999999
Q ss_pred CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccc
Q 042568 736 PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADF 815 (983)
Q Consensus 736 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Df 815 (983)
.+..++||||+++|+|.+++.........+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+||
T Consensus 107 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Df 183 (321)
T 2qkw_B 107 RNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDF 183 (321)
T ss_dssp TTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCSTTEEECTTCCEEECCC
T ss_pred CCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCC---eecCCCCHHHEEECCCCCEEEeec
Confidence 99999999999999999999765444456999999999999999999999996 999999999999999999999999
Q ss_pred cccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCC-CCch
Q 042568 816 GIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHD-GSSL 894 (983)
Q Consensus 816 gla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~-~~~l 894 (983)
|+++........ .......||+.|+|||.+.+..++.++||||||+++|||++|+.||...... ....
T Consensus 184 g~~~~~~~~~~~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~ 252 (321)
T 2qkw_B 184 GISKKGTELDQT-----------HLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNL 252 (321)
T ss_dssp TTCEECSSSSCC-----------CCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCH
T ss_pred cccccccccccc-----------ccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHH
Confidence 999865432211 1122346999999999998889999999999999999999999999754322 2222
Q ss_pred HHHHHhhCC-CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 895 HEWVKRHYP-HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 895 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
..|...... ..+. ... .+........+++.++.+++.+|++.||++|||++|++++|+.+.+..
T Consensus 253 ~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~ 317 (321)
T 2qkw_B 253 AEWAVESHNNGQLE--------QIV---DPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ 317 (321)
T ss_dssp HHHTHHHHTTTCCC--------SSS---SSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred HHHhhhccccccHH--------Hhc---ChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcc
Confidence 333221111 0000 000 011112233568889999999999999999999999999999887643
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-41 Score=396.63 Aligned_cols=374 Identities=19% Similarity=0.168 Sum_probs=231.1
Q ss_pred CCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCc-hhhhcccccccEEeccCcccccccCCcccccCCCcccc
Q 042568 101 SSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKI-PSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQ 179 (983)
Q Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~ 179 (983)
++|++|||++|.+++..|..|+++++|++|+|++|.+.+.+ |..|+++++|++|+|++|++++..|..+. .+++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN---GLANLE 106 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT---TCTTCC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc---CcccCC
Confidence 67888888888888777778888888888888888887555 45678888888888888888766566554 677888
Q ss_pred eeecccccccCCCC-CcccccccccceeecccCccccccchh-hhccCCcceecccccccccccchhhhcCC--CCccEE
Q 042568 180 YIDLSNNSLTGEIP-LKNECELRNLRFLLLWSNRLVGQVPQA-LANSSKLEWLDLESNMFSGELPSEIISKM--PQLQFL 255 (983)
Q Consensus 180 ~L~Ls~N~l~~~ip-~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l--~~L~~L 255 (983)
+|+|++|.+++.+| ...+..+++|++|+|++|++++..|.. +.++++|++|+|++|++++..+. .+..+ .+|+.|
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L 185 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLL 185 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhcccccccccc
Confidence 88888888776433 234667888888888888888777765 77888888888888888754443 33433 577788
Q ss_pred EccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccc--cCeeEEEccCccccccCCCCCCCCCcc
Q 042568 256 YLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLS--TNLVQIHLDCNLIYGKIPPHISNLVNL 333 (983)
Q Consensus 256 ~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~~L~~L~L~~N~l~~~~p~~l~~l~~L 333 (983)
++++|.+...............+..+++|++|++++|++++..|..+.... ++|+.|++++|.+.+..
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------- 255 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS---------- 255 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC----------
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc----------
Confidence 888887765433221112223344567778888888877776666655431 45666777666654321
Q ss_pred cEEeccccccCCCCCccccc--CCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhccc
Q 042568 334 TLLNLSSNLLNGTIPHELCL--MSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLY 411 (983)
Q Consensus 334 ~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 411 (983)
+..+.+.+..+..+.. .++|++|++++|.+.+.+|..|+.+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 256 ----~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 256 ----FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp ----TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ----cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 1111222122222222 2455666666666655555555555556666665555555545555555555555555
Q ss_pred CccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccC
Q 042568 412 GNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGS 491 (983)
Q Consensus 412 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 491 (983)
+|.+++..|..|..+++|++|+|++|+++ +..|..|..+++|++|+|++|+|++.
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIR-------------------------ALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCC-------------------------EECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccCCcChhHhcCcccCCEEECCCCccc-------------------------ccChhhccccccccEEECCCCccccC
Confidence 55554444444444555555555555444 44444455555555555555555544
Q ss_pred CCcccccccccceEEeCCCccccccc
Q 042568 492 IPPQLGSCIALESLNLSGNSLEGLLP 517 (983)
Q Consensus 492 ~p~~~~~l~~L~~L~Ls~N~l~~~~p 517 (983)
.+..+..+++|+.|+|++|++++..|
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CHhHhccCCcccEEEccCCCcccCCC
Confidence 44445666666666666666665554
No 46
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=2.3e-42 Score=403.40 Aligned_cols=250 Identities=24% Similarity=0.301 Sum_probs=199.2
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHH---HHHHHHhcCCCCccceeeEEecCCcee
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKR---ECQILKRIRHRNLIRIITICSKPDFKA 740 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~---E~~~l~~l~h~niv~l~~~~~~~~~~~ 740 (983)
++|.+.++||+|+||+||+|+.. +|+.||||++++... ......+.+ ++++++.++|||||+++++|.+++..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 46889999999999999999965 689999999965421 112233333 456667779999999999999999999
Q ss_pred EEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccc
Q 042568 741 LVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKL 820 (983)
Q Consensus 741 lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~ 820 (983)
+||||++||+|.+++... ..+++..++.++.||+.||+|||+++ ||||||||+|||++.+|.+||+|||+|+.
T Consensus 269 lVmEy~~GGdL~~~l~~~----~~l~E~~a~~y~~qIl~aL~yLH~~g---IiHRDLKPeNILld~~G~vKL~DFGlA~~ 341 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQH----GVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACD 341 (689)
T ss_dssp EEECCCCSCBHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred EEEecCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHeEEeCCCCEEecccceeee
Confidence 999999999999999753 46999999999999999999999996 99999999999999999999999999987
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
+.... ....+||+.|||||++.+ ..|+.++||||+||++|||++|+.||...... ....
T Consensus 342 ~~~~~---------------~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~--~~~~--- 401 (689)
T 3v5w_A 342 FSKKK---------------PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK--DKHE--- 401 (689)
T ss_dssp CSSCC---------------CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC--CHHH---
T ss_pred cCCCC---------------CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH--HHHH---
Confidence 64321 223589999999999974 57999999999999999999999999642111 1111
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHHH
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPS-----MLDVAHE 961 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-----~~evl~~ 961 (983)
+....... . ...| ...+.++.+++.+|++.||++|++ ++||++|
T Consensus 402 ---------i~~~i~~~-~-~~~p-------~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H 450 (689)
T 3v5w_A 402 ---------IDRMTLTM-A-VELP-------DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES 450 (689)
T ss_dssp ---------HHHHHHHC-C-CCCC-------TTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred ---------HHHhhcCC-C-CCCC-------ccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence 11111111 1 1111 224578899999999999999998 6888865
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-41 Score=394.69 Aligned_cols=390 Identities=19% Similarity=0.176 Sum_probs=265.9
Q ss_pred cEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCcccceeec
Q 042568 104 IVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDL 183 (983)
Q Consensus 104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~L 183 (983)
+.++.++++++ .+|. + .++|++|+|++|.|++..|..|+++++|++|+|++|.+.+.+|..
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~--------------- 73 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN--------------- 73 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT---------------
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc---------------
Confidence 35777777777 6676 3 267888888888888777888888888888888888876555432
Q ss_pred ccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccccccch-hhhcCCCCccEEEcccccc
Q 042568 184 SNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPS-EIISKMPQLQFLYLSYNDF 262 (983)
Q Consensus 184 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~Ls~N~l 262 (983)
.+..+++|++|+|++|++++..|..|+++++|++|+|++|++++.++. ..+..+++|++|+|++|++
T Consensus 74 ------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l 141 (455)
T 3v47_A 74 ------------TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141 (455)
T ss_dssp ------------TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC
T ss_pred ------------cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc
Confidence 334667777777777777777777777778888888888877754332 3355666666666666665
Q ss_pred ccCCCCCCCcccccc-cCCCCCccEEEccCCcccccCCccccccc-cCeeEEEccCccccccCCCCC--------CCCCc
Q 042568 263 VSHDGNTNLEPFFAS-LANSSNFQELELAGNNLGGMIPSIIGDLS-TNLVQIHLDCNLIYGKIPPHI--------SNLVN 332 (983)
Q Consensus 263 ~~~~~~~~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~~L~~L~L~~N~l~~~~p~~l--------~~l~~ 332 (983)
.... +.. +.++++|++|++++|++++..|..+..+. .+|+.|++++|.+.+..+..+ ..+++
T Consensus 142 ~~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 213 (455)
T 3v47_A 142 KKIQ--------PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213 (455)
T ss_dssp CSCC--------CCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE
T ss_pred CccC--------cccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccce
Confidence 4321 111 45566677777777777666666555542 356666666666654333222 23445
Q ss_pred ccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccC
Q 042568 333 LTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYG 412 (983)
Q Consensus 333 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 412 (983)
|++|++++|++++..|..+... ...++|+.|++++|.+.+... ..
T Consensus 214 L~~L~Ls~n~l~~~~~~~~~~~---------------------~~~~~L~~L~l~~~~~~~~~~--------------~~ 258 (455)
T 3v47_A 214 ITTLDLSGNGFKESMAKRFFDA---------------------IAGTKIQSLILSNSYNMGSSF--------------GH 258 (455)
T ss_dssp EEEEECTTSCCCHHHHHHHHHH---------------------TTTCCEEEEECTTCTTTSCCT--------------TC
T ss_pred eeeEecCCCcccccchhhhhcc---------------------ccccceeeEeecccccccccc--------------ch
Confidence 5555555555554444433322 011344444444444332110 11
Q ss_pred ccCCCCCcccccC--CCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCcccccccccccccccccccccc
Q 042568 413 NHLSGTIPSSLGK--CVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSG 490 (983)
Q Consensus 413 N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 490 (983)
+.+.+..+..+.. .++|+.|++++|++++.+|..+..+++|+. |++++|++++..|..|..+++|+.|+|++|++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ-LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCE-EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCE-EECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 1122112222222 357888888888888888888888888885 8888888888788888888888889999999887
Q ss_pred CCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCCCC
Q 042568 491 SIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISNKG 568 (983)
Q Consensus 491 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~ 568 (983)
..|..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..|..+++|++|++++|++++.+|...
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 778888889999999999999998888899999999999999999987666778899999999999999998888643
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-41 Score=391.49 Aligned_cols=406 Identities=25% Similarity=0.312 Sum_probs=277.9
Q ss_pred CeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCC-------------CEEeccCccCCCCchh
Q 042568 77 NKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRL-------------KQLSLSWNSLQGKIPS 143 (983)
Q Consensus 77 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~Ls~n~l~~~~p~ 143 (983)
.++.+|+++++.+ |.+|++++++++|++|++++|.++|.+|..++++++| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4688999999999 8999999999999999999999999999999999875 999999999994 555
Q ss_pred hhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhc
Q 042568 144 QLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALAN 223 (983)
Q Consensus 144 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 223 (983)
. .++|++|++++|++++ +|.. .++|++|++++|++++ +|. ..++|++|++++|++++ +| .|++
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~------~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL------PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC------CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTT
T ss_pred C---cCCCCEEEccCCcCCc-cccc------cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCC
Confidence 2 3789999999999995 7752 4799999999999985 432 12799999999999997 67 5999
Q ss_pred cCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCcccc
Q 042568 224 SSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIG 303 (983)
Q Consensus 224 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 303 (983)
+++|++|++++|++++ +|.. .++|++|++++|++... +.+.++++|++|++++|++++ +|..
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~l----------~~~~~l~~L~~L~l~~N~l~~-l~~~-- 213 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEEL----------PELQNLPFLTAIYADNNSLKK-LPDL-- 213 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSSC----------CCCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred CCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCcC----------ccccCCCCCCEEECCCCcCCc-CCCC--
Confidence 9999999999999984 6643 46999999999998653 247889999999999999986 4443
Q ss_pred ccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcE
Q 042568 304 DLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGL 383 (983)
Q Consensus 304 ~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 383 (983)
+.+|++|++++|.++ .+| .++.+++|++|++++|++++ +|.. +++|+.|++++|.+++ +|.. .++|+.
T Consensus 214 --~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~ 281 (454)
T 1jl5_A 214 --PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTF 281 (454)
T ss_dssp --CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred --cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCE
Confidence 358999999999998 677 49999999999999999995 5543 4789999999999996 5543 378999
Q ss_pred EEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCC-CCCCEEEccCccccCcCCccccCCCccceeccccCC
Q 042568 384 LDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKC-VNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSN 462 (983)
Q Consensus 384 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N 462 (983)
|++++|++++. |.. .++|+.|++++|.+++ ++ .+ ++|+.|++++|++++ +|.. +++|+. |++++|
T Consensus 282 L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~-L~L~~N 347 (454)
T 1jl5_A 282 LDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLER-LIASFN 347 (454)
T ss_dssp EECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCE-EECCSS
T ss_pred EECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCE-EECCCC
Confidence 99999999862 221 2688999999999984 22 33 589999999999996 6654 467875 999999
Q ss_pred CCCCCCcccccccccccccccccccccc--CCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccC--
Q 042568 463 HLDGPLPLELSKMDMVLAIDLSFNNLSG--SIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFG-- 538 (983)
Q Consensus 463 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~-- 538 (983)
++++ +|. .+++|++|+|++|++++ .+|.+++. |+.|.+.|.+|.. +++|+.|++++|++++
T Consensus 348 ~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~ 412 (454)
T 1jl5_A 348 HLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFP 412 (454)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-----------------------------
T ss_pred cccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccc
Confidence 9984 665 47889999999999998 67776654 3457777778764 5789999999999997
Q ss_pred CcCccccCCCCcceEeccCCccccccCC
Q 042568 539 EIPQSFQASPTLKQLNFSFNKFSGNISN 566 (983)
Q Consensus 539 ~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 566 (983)
.+|.+ ++.|.+.+|.+.+.++.
T Consensus 413 ~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 413 DIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ----------------------------
T ss_pred cchhh------HhheeCcCcccCCcccc
Confidence 67754 56677889988887654
No 49
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=5.7e-42 Score=404.99 Aligned_cols=252 Identities=19% Similarity=0.278 Sum_probs=207.8
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
++|.+.+.||+|+||.||+|..+ +|+.||||++..... ...+.+.+|+++|+.++|||||++++++.+.+..++||||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~-~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE-SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH-HHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccch-hhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 57999999999999999999965 789999999866543 2457789999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCC--CCEEEccccccccccC
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDED--LTALVADFGIAKLVKG 823 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~--~~~kl~Dfgla~~~~~ 823 (983)
|+||+|.+++... ...+++..+..++.||++||+|||+++ |+||||||+|||++.+ +.+||+|||+|+.+..
T Consensus 236 ~~gg~L~~~i~~~---~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~ 309 (573)
T 3uto_A 236 MSGGELFEKVADE---HNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP 309 (573)
T ss_dssp CCCCBHHHHHTCT---TSCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCSSCEECCT
T ss_pred cCCCcHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhccccCCCCCCEEEeeccceeEccC
Confidence 9999999988643 346899999999999999999999996 9999999999999854 8999999999997753
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
.. .....+||+.|||||++.+..|+.++||||+||++|||++|+.||... ...
T Consensus 310 ~~--------------~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~-----~~~-------- 362 (573)
T 3uto_A 310 KQ--------------SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE-----NDD-------- 362 (573)
T ss_dssp TS--------------EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS-----SHH--------
T ss_pred CC--------------ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHH--------
Confidence 22 112357999999999999999999999999999999999999998632 111
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
+.+......... . ....+...+.++.+|+.+|++.||++|||+.|+++|
T Consensus 363 ----~~~~~i~~~~~~--~---~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~H 411 (573)
T 3uto_A 363 ----ETLRNVKSCDWN--M---DDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH 411 (573)
T ss_dssp ----HHHHHHHTTCCC--C---CSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ----HHHHHHHhCCCC--C---CcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 111111111111 0 112233456788999999999999999999999986
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1e-39 Score=397.46 Aligned_cols=490 Identities=23% Similarity=0.214 Sum_probs=380.5
Q ss_pred eeeEEECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhc
Q 042568 67 WSGVKCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLG 146 (983)
Q Consensus 67 w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 146 (983)
|....|..... ..+-++.+++ .+|+.+- +++++|||++|+|++..|.+|+++++|++|+|++|+|++..|.+|+
T Consensus 24 ~~~c~~~~~~~---~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~ 97 (635)
T 4g8a_A 24 WEPCVEVVPNI---TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 97 (635)
T ss_dssp -CCSEEEETTT---EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCCccccCCCC---EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc
Confidence 76666654332 2355666776 6676442 4799999999999977778999999999999999999977788999
Q ss_pred ccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCcccc-ccchhhhccC
Q 042568 147 SLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVG-QVPQALANSS 225 (983)
Q Consensus 147 ~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~ 225 (983)
+|++|++|+|++|+|+ .+|...+ ..+++|++|+|++|+++ .+|...|.++++|++|+|++|++++ ..|..++.++
T Consensus 98 ~L~~L~~L~Ls~N~l~-~l~~~~f--~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~ 173 (635)
T 4g8a_A 98 SLSHLSTLILTGNPIQ-SLALGAF--SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 173 (635)
T ss_dssp TCTTCCEEECTTCCCC-EECGGGG--TTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred CCCCCCEEEccCCcCC-CCCHHHh--cCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccch
Confidence 9999999999999998 5665544 58999999999999998 5666778899999999999999976 4688999999
Q ss_pred CcceecccccccccccchhhhcCCCC----ccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCC--
Q 042568 226 KLEWLDLESNMFSGELPSEIISKMPQ----LQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIP-- 299 (983)
Q Consensus 226 ~L~~L~Ls~N~l~~~~~~~~~~~l~~----L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-- 299 (983)
+|++|+|++|++++ ++...+..+.+ +..++++.|.+..+.. .......++.+++++|.....++
T Consensus 174 ~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~---------~~~~~~~~~~l~l~~n~~~~~~~~~ 243 (635)
T 4g8a_A 174 NLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP---------GAFKEIRLHKLTLRNNFDSLNVMKT 243 (635)
T ss_dssp TCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECT---------TTTTTCEEEEEEEESCCSSHHHHHH
T ss_pred hhhhhcccCccccc-cccccccchhhhhhhhhhhhcccCcccccCc---------ccccchhhhhhhhhcccccccccch
Confidence 99999999999985 44444444444 3478899998765432 22233344555555554332111
Q ss_pred -----------------------------ccccccccCeeEEEccCccc---cccCCCCCCCCCcccEEeccccccCCCC
Q 042568 300 -----------------------------SIIGDLSTNLVQIHLDCNLI---YGKIPPHISNLVNLTLLNLSSNLLNGTI 347 (983)
Q Consensus 300 -----------------------------~~~~~l~~~L~~L~L~~N~l---~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 347 (983)
..+... ..+...++..+.. ...++..+..+.+++.+++.+|.+....
T Consensus 244 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 322 (635)
T 4g8a_A 244 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL-CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK 322 (635)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG-GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG
T ss_pred hhcCCcccccccccccccccccccccccccccccc-cchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc
Confidence 111111 1233333332221 1233455666778888888888876432
Q ss_pred CcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCC--CCCcccccC
Q 042568 348 PHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLS--GTIPSSLGK 425 (983)
Q Consensus 348 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~p~~l~~ 425 (983)
.+.....|+.|++.+|.+.+..+ ..++.|+.++++.|.+... ..+..+++|+.|++++|.+. +..+..+..
T Consensus 323 --~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 395 (635)
T 4g8a_A 323 --DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 395 (635)
T ss_dssp --GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred --ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhh
Confidence 35667889999999999986544 3467788999999988643 34567899999999999886 345667788
Q ss_pred CCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCc-cccccccccccccccccccccCCCcccccccccce
Q 042568 426 CVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLP-LELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALES 504 (983)
Q Consensus 426 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 504 (983)
+.+|+.++++.|.+.. .+..+..+++|+. ++++.|......+ ..+..+.+++.++++.|.+.+..|..+..++.|+.
T Consensus 396 ~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~-l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~ 473 (635)
T 4g8a_A 396 TISLKYLDLSFNGVIT-MSSNFLGLEQLEH-LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 473 (635)
T ss_dssp CSCCCEEECCSCSEEE-ECSCCTTCTTCCE-EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred hhhhhhhhcccccccc-ccccccccccccc-hhhhhccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 8999999999999884 5667888999996 9999888876554 56889999999999999999999999999999999
Q ss_pred EEeCCCcc-cccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCC-CCCCcccccccccCCc
Q 042568 505 LNLSGNSL-EGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISN-KGAFSSLTIASFQGND 582 (983)
Q Consensus 505 L~Ls~N~l-~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~N~ 582 (983)
|+|++|++ .+.+|..+..+++|+.|+|++|+|++..|..|.++++|++|+|++|++++.+|. ...+..+..+++.+|.
T Consensus 474 L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred hhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 99999985 456888999999999999999999999999999999999999999999998875 4667888889999996
Q ss_pred CccC
Q 042568 583 GLCG 586 (983)
Q Consensus 583 ~lc~ 586 (983)
..--
T Consensus 554 l~~~ 557 (635)
T 4g8a_A 554 IMTS 557 (635)
T ss_dssp CCBC
T ss_pred CCCC
Confidence 5433
No 51
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=6.4e-41 Score=371.06 Aligned_cols=278 Identities=24% Similarity=0.317 Sum_probs=211.9
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCc----eeE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDF----KAL 741 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----~~l 741 (983)
.++|...++||+|+||.||+|++. ++.||||++..... ....+.+|+.++++++||||+++++++..... .++
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~l 99 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK--QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL 99 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGH--HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCch--HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEE
Confidence 357888999999999999999986 78999999965432 34566779999999999999999999976543 599
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhcc----------CCCCeEeecCCCCCeEeCCCCCEE
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHH----------SPIKVVHCDLKPSNILLDEDLTAL 811 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~----------~~~~ivH~Dikp~NiLl~~~~~~k 811 (983)
||||+++|+|.+++.. ..+++..++.++.|+++||+|||+. + |+||||||+||+++.++.+|
T Consensus 100 v~e~~~~g~L~~~l~~-----~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~---ivH~Dlkp~Nill~~~~~~k 171 (322)
T 3soc_A 100 ITAFHEKGSLSDFLKA-----NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA---ISHRDIKSKNVLLKNNLTAC 171 (322)
T ss_dssp EEECCTTCBHHHHHHH-----CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE---EECSCCSGGGEEECTTCCEE
T ss_pred EEecCCCCCHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCC---EEeCCCChHhEEECCCCeEE
Confidence 9999999999999964 3589999999999999999999997 6 99999999999999999999
Q ss_pred EccccccccccCCcccccccCCCCccccccCccccccccccccccCC-----CCCCccchhHHHHHHHHHHHhCCCCCCc
Q 042568 812 VADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-----KRASTHGDVYSFGVLLLEIVTGRRPTDV 886 (983)
Q Consensus 812 l~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~k~Dv~SlG~il~elltg~~p~~~ 886 (983)
|+|||+++........ .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||..
T Consensus 172 L~DFg~a~~~~~~~~~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~ 240 (322)
T 3soc_A 172 IADFGLALKFEAGKSA-----------GDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADG 240 (322)
T ss_dssp ECCCTTCEEECTTSCC-----------CCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSS
T ss_pred EccCCcccccccccCc-----------cccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCC
Confidence 9999999876543221 11223579999999999887 3556788999999999999999999975
Q ss_pred ccCCCCc-hHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 042568 887 LFHDGSS-LHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRL 965 (983)
Q Consensus 887 ~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 965 (983)
....... ...... .........+...........+... .....+.++.+++.+||+.||++|||++|+++.|+++
T Consensus 241 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l 316 (322)
T 3soc_A 241 PVDEYMLPFEEEIG--QHPSLEDMQEVVVHKKKRPVLRDYW--QKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQM 316 (322)
T ss_dssp CCCCCCCTTHHHHC--SSCCHHHHHHHHTTSCCCCCCCGGG--GSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred Ccchhccchhhhhc--cCCchhhhhhhhhcccCCCCccccc--cccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 4332211 111111 1111122222222121111111111 1134677899999999999999999999999999999
Q ss_pred Hhhc
Q 042568 966 KQYL 969 (983)
Q Consensus 966 ~~~~ 969 (983)
.+..
T Consensus 317 ~~~~ 320 (322)
T 3soc_A 317 QRLT 320 (322)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 7653
No 52
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=1.7e-40 Score=374.39 Aligned_cols=266 Identities=24% Similarity=0.379 Sum_probs=214.2
Q ss_pred CCCCCCCccccCCcEeEEEEEEC--------CCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCC
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ--------DNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPD 737 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~--------~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 737 (983)
++|...+.||+|+||.||+|.+. ++..||||+++........+++.+|+++++++ +||||+++++++...+
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~ 160 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG 160 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSS
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCC
Confidence 56888899999999999999852 34579999997665555667899999999999 8999999999999999
Q ss_pred ceeEEEecccCcccccccccccC------------cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeC
Q 042568 738 FKALVLPLMSNGSLENHLYPSHG------------LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLD 805 (983)
Q Consensus 738 ~~~lv~e~~~~gsL~~~l~~~~~------------~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~ 805 (983)
..++||||+++|+|.+++..... ....+++..++.++.|+++||+|||+++ |+||||||+|||++
T Consensus 161 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~ 237 (370)
T 2psq_A 161 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVT 237 (370)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchhhEEEC
Confidence 99999999999999999875431 1245899999999999999999999996 99999999999999
Q ss_pred CCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCC
Q 042568 806 EDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPT 884 (983)
Q Consensus 806 ~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~ 884 (983)
.++.+||+|||+++........ .......||+.|+|||++.+..++.++|||||||++|||++ |+.||
T Consensus 238 ~~~~~kl~DFG~a~~~~~~~~~-----------~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~ 306 (370)
T 2psq_A 238 ENNVMKIADFGLARDINNIDYY-----------KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPY 306 (370)
T ss_dssp TTCCEEECCCSSCEETTCCCTT-----------CTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred CCCCEEEccccCCcccCcccce-----------ecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999866532211 11122357889999999999999999999999999999999 99998
Q ss_pred CcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 042568 885 DVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGR 964 (983)
Q Consensus 885 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 964 (983)
.... .. +.... +........+ ..++.++.+++.+||+.||++||++.|++++|++
T Consensus 307 ~~~~--~~---------------~~~~~-~~~~~~~~~~-------~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~ 361 (370)
T 2psq_A 307 PGIP--VE---------------ELFKL-LKEGHRMDKP-------ANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 361 (370)
T ss_dssp TTCC--GG---------------GHHHH-HHTTCCCCCC-------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCC--HH---------------HHHHH-HhcCCCCCCC-------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence 6421 11 11111 1111111111 1245678999999999999999999999999999
Q ss_pred hHhhcCC
Q 042568 965 LKQYLSS 971 (983)
Q Consensus 965 ~~~~~~~ 971 (983)
+.+....
T Consensus 362 il~~~~~ 368 (370)
T 2psq_A 362 ILTLTTN 368 (370)
T ss_dssp HHHHHC-
T ss_pred HHHHhcc
Confidence 9765543
No 53
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=6.9e-40 Score=360.61 Aligned_cols=287 Identities=31% Similarity=0.480 Sum_probs=226.3
Q ss_pred cCCCCCHHHHHHHhCCCCCC------CccccCCcEeEEEEEECCCcEEEEEEeeccc---CcchhHHHHHHHHHHHhcCC
Q 042568 653 KNPRVSYKQLIEATGGFCPS------SLIGSGRFGHVYKGVLQDNTRIAVKVLDLTT---TGEITGSFKRECQILKRIRH 723 (983)
Q Consensus 653 ~~~~~~~~~l~~~~~~f~~~------~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~---~~~~~~~~~~E~~~l~~l~h 723 (983)
....+++.++..++++|... +.||+|+||.||+|.. +++.||||++.... ..+..+.+.+|++++++++|
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 89 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH 89 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence 45678999999999999887 8899999999999987 58899999986532 23346789999999999999
Q ss_pred CCccceeeEEecCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeE
Q 042568 724 RNLIRIITICSKPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNIL 803 (983)
Q Consensus 724 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiL 803 (983)
|||+++++++...+..++||||+++++|.+++..... ...+++..++.++.|+++||+|||+.+ |+||||||+||+
T Consensus 90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nil 165 (307)
T 2nru_A 90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDG-TPPLSWHMRCKIAQGAANGINFLHENH---HIHRDIKSANIL 165 (307)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGG-CCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEE
T ss_pred CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhcCC---eecCCCCHHHEE
Confidence 9999999999999999999999999999998865432 456999999999999999999999996 999999999999
Q ss_pred eCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCC
Q 042568 804 LDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRP 883 (983)
Q Consensus 804 l~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p 883 (983)
++.++.+||+|||+++........ .......||+.|+|||.+.+ .++.++||||||+++|+|++|+.|
T Consensus 166 i~~~~~~kl~Dfg~~~~~~~~~~~-----------~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p 233 (307)
T 2nru_A 166 LDEAFTAKISDFGLARASEKFAQT-----------VMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPA 233 (307)
T ss_dssp ECTTCCEEECCCTTCEECCSCSSC-----------EECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCS
T ss_pred EcCCCcEEEeeccccccccccccc-----------ccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCC
Confidence 999999999999999866532211 11223469999999998876 478999999999999999999999
Q ss_pred CCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 884 TDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 884 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
|+..... ..+..+........ ..+...+.. .. .......+..+.+++.+|++.||++|||++|++++|+
T Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~----~~----~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~ 302 (307)
T 2nru_A 234 VDEHREP-QLLLDIKEEIEDEE--KTIEDYIDK----KM----NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQ 302 (307)
T ss_dssp BCTTBSS-SBTTHHHHHHHTTS--CCHHHHSCS----SC----SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred cccCcch-HHHHHHHHHhhhhh--hhhhhhccc----cc----cccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 8753322 11222211111000 001111111 11 1123457788999999999999999999999999999
Q ss_pred HhHh
Q 042568 964 RLKQ 967 (983)
Q Consensus 964 ~~~~ 967 (983)
++..
T Consensus 303 ~l~~ 306 (307)
T 2nru_A 303 EMTA 306 (307)
T ss_dssp HHC-
T ss_pred HHhc
Confidence 8854
No 54
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=1.9e-40 Score=364.53 Aligned_cols=270 Identities=29% Similarity=0.416 Sum_probs=204.5
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|.+.+.||+|+||.||+|+. +++.||||++..... .+..+++.+|++++++++||||+++++++...+..++|||
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 114 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTE 114 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEE
T ss_pred hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEe
Confidence 45788899999999999999987 488999999865542 3345689999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|+++|+|.+++..... ...+++..++.++.|+++||+|||+.++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 115 ~~~~~~L~~~l~~~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~~-~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~ 192 (309)
T 3p86_A 115 YLSRGSLYRLLHKSGA-REQLDERRRLSMAYDVAKGMNYLHNRNP-PIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAST 192 (309)
T ss_dssp CCTTCBHHHHHHSTTH-HHHSCHHHHHHHHHHHHHHHHHHHTSSS-CCCCTTCCGGGEEECTTCCEEECCCC--------
T ss_pred cCCCCcHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHcCCC-CEECCCCChhhEEEeCCCcEEECCCCCCcccccc
Confidence 9999999999875321 2348999999999999999999999842 3999999999999999999999999999754322
Q ss_pred cccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCC
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
. .......||+.|+|||.+.+..++.++||||||+++|||++|+.||.... ..
T Consensus 193 ~-------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~-----~~--------- 245 (309)
T 3p86_A 193 F-------------LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLN-----PA--------- 245 (309)
T ss_dssp ----------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSC-----HH---------
T ss_pred c-------------cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-----HH---------
Confidence 1 11223579999999999999999999999999999999999999986421 11
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCCCchh
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSSPSSL 975 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~~~~ 975 (983)
...............+ ..++.++.+++.+||+.||++|||++|+++.|+.+.+....+...
T Consensus 246 ---~~~~~~~~~~~~~~~~-------~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p~~~~ 306 (309)
T 3p86_A 246 ---QVVAAVGFKCKRLEIP-------RNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPPPNR 306 (309)
T ss_dssp ---HHHHHHHHSCCCCCCC-------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--------
T ss_pred ---HHHHHHHhcCCCCCCC-------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCCCCCc
Confidence 1111111111111111 124567899999999999999999999999999998876665543
No 55
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=4.6e-40 Score=359.59 Aligned_cols=252 Identities=19% Similarity=0.312 Sum_probs=206.7
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|...+.||+|+||.||+|.. .+++.||||++...... ..+.+.+|+.++++++||||+++++++...+..++|||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 97 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP-KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME 97 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCS-CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccccc-HHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence 35799999999999999999995 57889999998765433 35778999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|+++|+|.+++.. ..+++..+..++.|+++||+|||+++ |+||||||+||+++.++.+||+|||++......
T Consensus 98 ~~~~~~L~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 169 (297)
T 3fxz_A 98 YLAGGSLTDVVTE-----TCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE 169 (297)
T ss_dssp CCTTCBHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCST
T ss_pred CCCCCCHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEECCCCCEEEeeCCCceecCCc
Confidence 9999999999863 35899999999999999999999996 999999999999999999999999999876532
Q ss_pred cccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCC
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
.. ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||.... ...
T Consensus 170 ~~-------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~----~~~--------- 223 (297)
T 3fxz_A 170 QS-------------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN----PLR--------- 223 (297)
T ss_dssp TC-------------CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HHH---------
T ss_pred cc-------------ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC----HHH---------
Confidence 21 1223579999999999999999999999999999999999999985321 100
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
........... ..+ .....+..+.+++.+|++.||++|||++|++++-
T Consensus 224 ----~~~~~~~~~~~-~~~-----~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h~ 271 (297)
T 3fxz_A 224 ----ALYLIATNGTP-ELQ-----NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQ 271 (297)
T ss_dssp ----HHHHHHHHCSC-CCS-----CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCG
T ss_pred ----HHHHHHhCCCC-CCC-----CccccCHHHHHHHHHHccCChhHCcCHHHHhhCh
Confidence 01111111110 000 0123456789999999999999999999999864
No 56
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=364.95 Aligned_cols=264 Identities=26% Similarity=0.393 Sum_probs=211.6
Q ss_pred CCCCCCCccccCCcEeEEEEEEC----CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ----DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~----~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
++|.+.+.||+|+||.||+|.+. .+..||||+++........+.+.+|++++++++||||+++++++...+..++|
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 128 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV 128 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence 46778899999999999999974 34459999997665555677899999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|||+++|+|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 129 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 202 (325)
T 3kul_A 129 TEYMENGSLDTFLRTH---DGQFTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSRVLE 202 (325)
T ss_dssp EECCTTCBHHHHHHTT---TTCSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred eeCCCCCcHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEECCCCCEEECCCCcccccc
Confidence 9999999999998643 346899999999999999999999996 9999999999999999999999999998765
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhh
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~ 901 (983)
...... .......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.....
T Consensus 203 ~~~~~~----------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~------------ 260 (325)
T 3kul_A 203 DDPDAA----------YTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTN------------ 260 (325)
T ss_dssp ----CC----------EECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCH------------
T ss_pred cCccce----------eeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCH------------
Confidence 432111 11122356889999999998899999999999999999999 9999853211
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCC
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSS 971 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~ 971 (983)
...... +........+ ..++.++.+++.+||+.||++|||+.|+++.|+++.+...+
T Consensus 261 -----~~~~~~-~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~ 317 (325)
T 3kul_A 261 -----RDVISS-VEEGYRLPAP-------MGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPES 317 (325)
T ss_dssp -----HHHHHH-HHTTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC-
T ss_pred -----HHHHHH-HHcCCCCCCC-------CCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCccc
Confidence 111111 1111111111 22457889999999999999999999999999999876554
No 57
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=369.16 Aligned_cols=255 Identities=26% Similarity=0.350 Sum_probs=201.5
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|...+.||+|+||+||+|.+ .+|+.||||++..........++.+|++++++++||||+++++++...+..++|||
T Consensus 9 ~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~E 88 (347)
T 3zgw_A 9 LKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVLE 88 (347)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEEe
Confidence 46888999999999999999996 47899999999776555556789999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|+++|+|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||++++++.+||+|||++......
T Consensus 89 ~~~gg~L~~~l~~----~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 161 (347)
T 3zgw_A 89 YCPGGELFDYIIS----QDRLSEEETRVVFRQIVSAVAYVHSQG---YAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGN 161 (347)
T ss_dssp CCTTCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBC----
T ss_pred CCCCCCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCccHHHEEEcCCCCEEEEeccCcccccCC
Confidence 9999999998865 345899999999999999999999996 999999999999999999999999998765432
Q ss_pred cccccccCCCCccccccCccccccccccccccCCCCC-CccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRA-STHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
.. .......||+.|+|||.+.+..+ +.++||||+||++|+|++|+.||+.. ...
T Consensus 162 ~~------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~-----~~~-------- 216 (347)
T 3zgw_A 162 KD------------YHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDD-----NVM-------- 216 (347)
T ss_dssp ----------------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCS-----SHH--------
T ss_pred CC------------ccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC-----CHH--------
Confidence 11 11233579999999999998775 89999999999999999999998631 111
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRL 965 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 965 (983)
............ .+. ....++.+++.+|++.||++|||++|++++-.-.
T Consensus 217 ----~~~~~i~~~~~~--~p~-------~~s~~~~~li~~~L~~dP~~Rps~~eil~hp~~~ 265 (347)
T 3zgw_A 217 ----ALYKKIMRGKYD--VPK-------WLSPSSILLLQQMLQVDPKKRISMKNLLNHPWIM 265 (347)
T ss_dssp ----HHHHHHHHTCCC--CCT-------TCCHHHHHHHHHHTCSSGGGSCCHHHHHTCHHHH
T ss_pred ----HHHHHHHcCCCC--CCC-------CCCHHHHHHHHHHcccCHhHCcCHHHHhcCcchh
Confidence 111121111111 111 1346788899999999999999999999876543
No 58
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=3.1e-40 Score=365.31 Aligned_cols=256 Identities=24% Similarity=0.400 Sum_probs=205.0
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
++|.+.+.||+|+||.||+|... +++.||||++......+..+.+.+|+++++.++||||+++++++...+..++||||
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 86 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence 57889999999999999999976 78899999997665544557789999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
+++|+|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++.+....
T Consensus 87 ~~~~~L~~~l~~----~~~~~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 159 (323)
T 3tki_A 87 CSGGELFDRIEP----DIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159 (323)
T ss_dssp CTTEEGGGGSBT----TTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred CCCCcHHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccchHHEEEeCCCCEEEEEeeccceeccCC
Confidence 999999999874 345899999999999999999999996 9999999999999999999999999998664322
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCCC-CccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRA-STHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
.. .......||+.|+|||++.+..+ +.++||||+||++|||++|+.||............+...
T Consensus 160 ~~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~---- 224 (323)
T 3tki_A 160 RE-----------RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK---- 224 (323)
T ss_dssp EE-----------CCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTT----
T ss_pred cc-----------cccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcc----
Confidence 11 11223579999999999988765 778999999999999999999997432221111111111
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
... ...+.....++.+++.+|++.||++|||++|++++-.
T Consensus 225 ------------~~~-------~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~ 264 (323)
T 3tki_A 225 ------------KTY-------LNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRW 264 (323)
T ss_dssp ------------CTT-------STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTT
T ss_pred ------------ccc-------CCccccCCHHHHHHHHHHccCChhhCcCHHHHhhChh
Confidence 000 0112335577889999999999999999999998643
No 59
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=1.4e-39 Score=359.89 Aligned_cols=265 Identities=21% Similarity=0.280 Sum_probs=213.1
Q ss_pred CCCCCHHHHHHHhCC----------CCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcC
Q 042568 654 NPRVSYKQLIEATGG----------FCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIR 722 (983)
Q Consensus 654 ~~~~~~~~l~~~~~~----------f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~ 722 (983)
.+.++++++..+++. |...+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|++++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~ 100 (321)
T 2c30_A 22 SGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQ-QRRELLFNEVVIMRDYQ 100 (321)
T ss_dssp ---CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-CSHHHHHHHHHHHTTCC
T ss_pred CCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccch-hHHHHHHHHHHHHHhCC
Confidence 356778888777754 556678999999999999976 789999999975543 34677899999999999
Q ss_pred CCCccceeeEEecCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCe
Q 042568 723 HRNLIRIITICSKPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNI 802 (983)
Q Consensus 723 h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~Ni 802 (983)
||||+++++++...+..++||||+++++|.+++.. ..+++..+..++.|+++||+|||+.+ |+||||||+||
T Consensus 101 h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-----~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NI 172 (321)
T 2c30_A 101 HFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ-----VRLNEEQIATVCEAVLQALAYLHAQG---VIHRDIKSDSI 172 (321)
T ss_dssp CTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGE
T ss_pred CCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHE
Confidence 99999999999999999999999999999998863 45899999999999999999999996 99999999999
Q ss_pred EeCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCC
Q 042568 803 LLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRR 882 (983)
Q Consensus 803 Ll~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~ 882 (983)
+++.++.+||+|||+++....... ......||+.|+|||++.+..++.++||||||+++|||++|+.
T Consensus 173 ll~~~~~~kl~Dfg~~~~~~~~~~-------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~ 239 (321)
T 2c30_A 173 LLTLDGRVKLSDFGFCAQISKDVP-------------KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEP 239 (321)
T ss_dssp EECTTCCEEECCCTTCEECCSSSC-------------CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred EECCCCcEEEeeeeeeeecccCcc-------------ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence 999999999999999986643211 1123479999999999999999999999999999999999999
Q ss_pred CCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 883 PTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 883 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
||.... ... .... +......... .....+.++.+++.+|++.||++|||++|++++-
T Consensus 240 pf~~~~-----~~~------------~~~~-~~~~~~~~~~-----~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp 296 (321)
T 2c30_A 240 PYFSDS-----PVQ------------AMKR-LRDSPPPKLK-----NSHKVSPVLRDFLERMLVRDPQERATAQELLDHP 296 (321)
T ss_dssp TTTTSC-----HHH------------HHHH-HHHSSCCCCT-----TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSG
T ss_pred CCCCCC-----HHH------------HHHH-HhcCCCCCcC-----ccccCCHHHHHHHHHHccCChhhCcCHHHHhcCh
Confidence 985321 011 1111 1111111110 1123456789999999999999999999999874
Q ss_pred H
Q 042568 963 G 963 (983)
Q Consensus 963 ~ 963 (983)
.
T Consensus 297 ~ 297 (321)
T 2c30_A 297 F 297 (321)
T ss_dssp G
T ss_pred h
Confidence 4
No 60
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=4.6e-40 Score=363.94 Aligned_cols=250 Identities=25% Similarity=0.381 Sum_probs=206.3
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
.++|...+.||+|+||.||+|.+ .+|+.||||++..... ....+++.+|+++++.++||||+++++++...+..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 35788999999999999999997 5789999999976543 334677899999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++|+|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++....
T Consensus 94 e~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 166 (328)
T 3fe3_A 94 EYASGGEVFDYLVAH----GRMKEKEARSKFRQIVSAVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEFTV 166 (328)
T ss_dssp CCCTTCBHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTCCGGGSS
T ss_pred ECCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCCHHHEEEcCCCCEEEeeccCceecCC
Confidence 999999999998653 45899999999999999999999996 99999999999999999999999999986543
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCC-ccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRAS-THGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.. ......||+.|+|||.+.+..+. .++||||+||++|||++|+.||+.. ...
T Consensus 167 ~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~-----~~~------- 220 (328)
T 3fe3_A 167 GG--------------KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ-----NLK------- 220 (328)
T ss_dssp SC--------------GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS-----SHH-------
T ss_pred CC--------------ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC-----CHH-------
Confidence 21 12235799999999999888765 7999999999999999999998632 111
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
...+....... ..|. ..+.++.+++.+|++.||++|||++|++++-
T Consensus 221 -----~~~~~i~~~~~--~~p~-------~~s~~~~~li~~~L~~dP~~R~t~~eil~h~ 266 (328)
T 3fe3_A 221 -----ELRERVLRGKY--RIPF-------YMSTDCENLLKRFLVLNPIKRGTLEQIMKDR 266 (328)
T ss_dssp -----HHHHHHHHCCC--CCCT-------TSCHHHHHHHHHHCCSSTTTSCCHHHHTTCT
T ss_pred -----HHHHHHHhCCC--CCCC-------CCCHHHHHHHHHHCCCChhHCcCHHHHhcCH
Confidence 11122111111 1111 1346788999999999999999999999863
No 61
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=2.1e-40 Score=375.03 Aligned_cols=261 Identities=28% Similarity=0.438 Sum_probs=212.1
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
++|...+.||+|+||.||+|.+. +++.||||.++.....+..++|.+|++++++++||||+++++++...+..++||||
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 193 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMEL 193 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEc
Confidence 46778899999999999999976 78899999987655444567889999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
+++|+|.+++... ...+++..+..++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+++......
T Consensus 194 ~~~g~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~ 267 (377)
T 3cbl_A 194 VQGGDFLTFLRTE---GARLRVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREEADGV 267 (377)
T ss_dssp CTTCBHHHHHHHH---GGGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEECTTSE
T ss_pred CCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHCC---cCCcccCHHHEEEcCCCcEEECcCCCceecCCCc
Confidence 9999999998753 345899999999999999999999996 9999999999999999999999999998643221
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
. ........+++.|+|||.+.+..++.++||||||+++|||++ |+.||.....
T Consensus 268 ~-----------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~--------------- 321 (377)
T 3cbl_A 268 Y-----------AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSN--------------- 321 (377)
T ss_dssp E-----------ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH---------------
T ss_pred e-----------eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH---------------
Confidence 1 111122346788999999998889999999999999999998 9999864211
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
......+........+ ..++.++.+++.+||+.||++|||++++++.|+++.+..
T Consensus 322 ---~~~~~~~~~~~~~~~~-------~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~~ 376 (377)
T 3cbl_A 322 ---QQTREFVEKGGRLPCP-------ELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKRH 376 (377)
T ss_dssp ---HHHHHHHHTTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHcCCCCCCC-------CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhhc
Confidence 0111111111111111 124567899999999999999999999999999997653
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.1e-39 Score=372.53 Aligned_cols=363 Identities=21% Similarity=0.247 Sum_probs=246.2
Q ss_pred cccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCc
Q 042568 89 IYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIP 168 (983)
Q Consensus 89 l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~ 168 (983)
..+..+..++++++|++|+|++|.+++ +| .++.+++|++|+|++|+|++ +| ++.+++|++|+|++|++++ +|
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--
T ss_pred cCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--
Confidence 334455567788888888888888885 35 67888888888888888885 34 7788888888888888874 33
Q ss_pred ccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcC
Q 042568 169 IFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISK 248 (983)
Q Consensus 169 ~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 248 (983)
+ ..+++|++|++++|.+++ +| +..+++|++|++++|++++. + ++++++|++|++++|+..+.++ +..
T Consensus 102 ~---~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~ 168 (457)
T 3bz5_A 102 V---TPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTP 168 (457)
T ss_dssp C---TTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTT
T ss_pred c---CCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---ccc
Confidence 2 356677777777776664 33 44666666666666666653 2 5566666666666664433432 334
Q ss_pred CCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCC
Q 042568 249 MPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHIS 328 (983)
Q Consensus 249 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~ 328 (983)
+++|++|++++| ++++ +| +..+ ++|+.|++++|.+++. .++
T Consensus 169 l~~L~~L~ls~n--------------------------------~l~~-l~--l~~l-~~L~~L~l~~N~l~~~---~l~ 209 (457)
T 3bz5_A 169 QTQLTTLDCSFN--------------------------------KITE-LD--VSQN-KLLNRLNCDTNNITKL---DLN 209 (457)
T ss_dssp CTTCCEEECCSS--------------------------------CCCC-CC--CTTC-TTCCEEECCSSCCSCC---CCT
T ss_pred CCcCCEEECCCC--------------------------------ccce-ec--cccC-CCCCEEECcCCcCCee---ccc
Confidence 444555555544 4443 22 2333 3456666666666543 366
Q ss_pred CCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhh
Q 042568 329 NLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRL 408 (983)
Q Consensus 329 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 408 (983)
.+++|++|++++|++++ +| ++.+++|+.|++++|.+++.. ++.+++|+.|++++|+ |+.|
T Consensus 210 ~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L 269 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEI 269 (457)
T ss_dssp TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCC
T ss_pred cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEE
Confidence 67777777777777775 44 667777777777777777643 4556677777777653 4567
Q ss_pred cccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCcccccccccccccccccccc
Q 042568 409 LLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNL 488 (983)
Q Consensus 409 ~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 488 (983)
++++|.+.+.+| ++.+++|+.|++++|++.+.+|.. ...++. +++++| ++|+.|+|++|+|
T Consensus 270 ~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~-L~l~~~-------------~~L~~L~L~~N~l 330 (457)
T 3bz5_A 270 DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AAGITE-LDLSQN-------------PKLVYLYLNNTEL 330 (457)
T ss_dssp CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TCCCSC-CCCTTC-------------TTCCEEECTTCCC
T ss_pred ECCCCccCCccc--ccccccCCEEECCCCcccceeccC---CCcceE-echhhc-------------ccCCEEECCCCcc
Confidence 777887776666 467788888888888877777643 344553 555554 5678888888888
Q ss_pred ccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCC
Q 042568 489 SGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISN 566 (983)
Q Consensus 489 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 566 (983)
++ +| ++.+++|+.|++++|+|++ ++.|..|++++|+++|. ..+..|+.+++++|+++|.+|.
T Consensus 331 ~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 331 TE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp SC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred cc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 86 33 8888888888888888885 24567778888888875 3456677888899999888875
No 63
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=358.79 Aligned_cols=274 Identities=23% Similarity=0.388 Sum_probs=212.9
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
++|...++||+|+||.||+|.+. +++.||+|.+... ..+..+.+.+|++++++++||||+++++++...+..++||||
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF-DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 56778899999999999999975 6889999988543 334567899999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
+++|+|.+++... ...+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++......
T Consensus 89 ~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 162 (310)
T 3s95_A 89 IKGGTLRGIIKSM---DSQYPWSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEK 162 (310)
T ss_dssp CTTCBHHHHHHHC---CTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEECTTSCEEECCCTTCEECC---
T ss_pred cCCCcHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCcCeEEECCCCCEEEeecccceeccccc
Confidence 9999999999753 346899999999999999999999996 9999999999999999999999999998765432
Q ss_pred ccccccCC-CCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCC
Q 042568 826 ESVNCAND-SMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 826 ~~~~~~~~-~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
........ ............||+.|+|||.+.+..++.++||||||+++|||++|..||..........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~---------- 232 (310)
T 3s95_A 163 TQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDF---------- 232 (310)
T ss_dssp -----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTS----------
T ss_pred ccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHH----------
Confidence 21100000 0000011124579999999999999999999999999999999999999986432211110
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcC
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLS 970 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~ 970 (983)
............+ ..++.++.+++.+|++.||++|||++|+++.|+.++....
T Consensus 233 --~~~~~~~~~~~~~-----------~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~ 285 (310)
T 3s95_A 233 --GLNVRGFLDRYCP-----------PNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLA 285 (310)
T ss_dssp --SBCHHHHHHHTCC-----------TTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred --hhhhhccccccCC-----------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcc
Confidence 0011111111111 1233568899999999999999999999999999987644
No 64
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1e-39 Score=351.83 Aligned_cols=257 Identities=25% Similarity=0.394 Sum_probs=211.1
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEecc
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPLM 746 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 746 (983)
++|...+.||+|+||.||+|.+.+++.||||++...... .+++.+|++++++++||||+++++++.+....++||||+
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~--~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS--EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBC--HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccC--HHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence 467788999999999999999988999999999755433 477999999999999999999999999999999999999
Q ss_pred cCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCcc
Q 042568 747 SNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGIDE 826 (983)
Q Consensus 747 ~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~ 826 (983)
++++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++.......
T Consensus 88 ~~~~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 161 (269)
T 4hcu_A 88 EHGCLSDYLRTQ---RGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY 161 (269)
T ss_dssp TTCBHHHHHHTT---TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred CCCcHHHHHHhc---CcccCHHHHHHHHHHHHHHHHHHHhCC---eecCCcchheEEEcCCCCEEecccccccccccccc
Confidence 999999998653 345899999999999999999999996 99999999999999999999999999986643221
Q ss_pred cccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCCC
Q 042568 827 SVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPHR 905 (983)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~~ 905 (983)
.......||+.|+|||.+.+..++.++||||+|+++|+|++ |+.||.... ..
T Consensus 162 ------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~-----~~---------- 214 (269)
T 4hcu_A 162 ------------TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS-----NS---------- 214 (269)
T ss_dssp ------------HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-----HH----------
T ss_pred ------------ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCC-----HH----------
Confidence 11122357889999999998899999999999999999999 999986321 11
Q ss_pred CcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 906 LDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
...+..... .....+ ...+.++.+++.+|++.||++|||++|++++|+++.+.
T Consensus 215 --~~~~~~~~~-~~~~~~-------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 215 --EVVEDISTG-FRLYKP-------RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp --HHHHHHHTT-CCCCCC-------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred --HHHHHHhcC-ccCCCC-------CcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 111111111 111111 11346789999999999999999999999999998764
No 65
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=4.7e-40 Score=370.97 Aligned_cols=262 Identities=26% Similarity=0.411 Sum_probs=201.2
Q ss_pred CCCCCCCccccCCcEeEEEEEEC----CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ----DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~----~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
++|.+.+.||+|+||.||+|+.. ++..||||.++........++|.+|++++++++||||+++++++...+..++|
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 124 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV 124 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence 57889999999999999999864 56779999997665555667899999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|||+++|+|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 125 ~e~~~~~sL~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 198 (373)
T 2qol_A 125 TEYMENGSLDSFLRKH---DAQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGRVLE 198 (373)
T ss_dssp EECCTTCBHHHHHHTT---TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EeCCCCCcHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEEcCCCCEEECcCccccccc
Confidence 9999999999999753 346899999999999999999999996 9999999999999999999999999998765
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhh
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~ 901 (983)
...... .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||.... ..
T Consensus 199 ~~~~~~----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~-----~~------ 257 (373)
T 2qol_A 199 DDPEAA----------YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMS-----NQ------ 257 (373)
T ss_dssp -------------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCC-----HH------
T ss_pred cCCccc----------eeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCC-----HH------
Confidence 432110 11112246788999999999999999999999999999998 999985321 11
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
...+........ .. ..+++.++.+++.+||+.||++||++.|+++.|+++.+..
T Consensus 258 ------~~~~~i~~~~~~-~~-------~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~ 311 (373)
T 2qol_A 258 ------DVIKAVDEGYRL-PP-------PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP 311 (373)
T ss_dssp ------HHHHHHHTTEEC-CC-------CTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred ------HHHHHHHcCCCC-CC-------CccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence 111111111110 00 1234577899999999999999999999999999986543
No 66
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=6.3e-40 Score=369.51 Aligned_cols=273 Identities=25% Similarity=0.346 Sum_probs=215.8
Q ss_pred HHHHHHHhCCCCCCCccccCCcEeEEEEEE------CCCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceee
Q 042568 659 YKQLIEATGGFCPSSLIGSGRFGHVYKGVL------QDNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIIT 731 (983)
Q Consensus 659 ~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~------~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~ 731 (983)
..+.....++|.+.+.||+|+||.||+|.+ .+++.||||+++........+.+.+|+++++++ +||||+++++
T Consensus 14 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~ 93 (359)
T 3vhe_A 14 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 93 (359)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred cccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeee
Confidence 334444567899999999999999999984 245789999997665555567899999999999 7999999999
Q ss_pred EEecCCc-eeEEEecccCcccccccccccCc-------------------------------------------------
Q 042568 732 ICSKPDF-KALVLPLMSNGSLENHLYPSHGL------------------------------------------------- 761 (983)
Q Consensus 732 ~~~~~~~-~~lv~e~~~~gsL~~~l~~~~~~------------------------------------------------- 761 (983)
++...+. .++||||+++|+|.+++......
T Consensus 94 ~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (359)
T 3vhe_A 94 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSL 173 (359)
T ss_dssp EECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------------
T ss_pred eeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccccc
Confidence 9977654 89999999999999998754321
Q ss_pred -------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCcccc
Q 042568 762 -------------SHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGIDESV 828 (983)
Q Consensus 762 -------------~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~~~ 828 (983)
...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++........
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~- 249 (359)
T 3vhe_A 174 SDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY- 249 (359)
T ss_dssp ----------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTC-
T ss_pred chhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCcEEEEeccceeeecccccc-
Confidence 122899999999999999999999996 999999999999999999999999999866432211
Q ss_pred cccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCCCCc
Q 042568 829 NCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPHRLD 907 (983)
Q Consensus 829 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~~~~ 907 (983)
.......||+.|+|||++.+..++.++||||||+++|||++ |+.||......
T Consensus 250 ----------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~----------------- 302 (359)
T 3vhe_A 250 ----------VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID----------------- 302 (359)
T ss_dssp ----------EEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS-----------------
T ss_pred ----------hhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchh-----------------
Confidence 12233568999999999999999999999999999999998 99998642111
Q ss_pred HHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 908 PIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
..+...+........+ ..+..++.+++.+|++.||++|||++|++++|+++.+..
T Consensus 303 ~~~~~~~~~~~~~~~~-------~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 357 (359)
T 3vhe_A 303 EEFCRRLKEGTRMRAP-------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 357 (359)
T ss_dssp HHHHHHHHHTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCC-------CCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence 1111122221111111 123467899999999999999999999999999987653
No 67
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.4e-40 Score=360.24 Aligned_cols=271 Identities=22% Similarity=0.363 Sum_probs=212.2
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
.++|.+.+.||+|+||.||+|... +++.||+|.+..... .+..+++.+|++++++++||||+++++++...+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 357888999999999999999965 688999999865432 23457899999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|||+++++|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 90 ~e~~~g~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 162 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESH----GPLSVDTAINFTNQILDGIKHAHDMR---IVHRDIKPQNILIDSNKTLKIFDFGIAKALS 162 (294)
T ss_dssp EECCCSCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCSSSTTC-
T ss_pred EeCCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEEeCCCccccc
Confidence 9999999999998753 45899999999999999999999996 9999999999999999999999999998664
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.... .......||+.|+|||.+.+..++.++||||+|+++|||++|+.||.... . .....
T Consensus 163 ~~~~------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~----~-~~~~~--- 222 (294)
T 4eqm_A 163 ETSL------------TQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGET----A-VSIAI--- 222 (294)
T ss_dssp ------------------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSC----H-HHHHH---
T ss_pred cccc------------cccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC----h-HHHHH---
Confidence 3211 11223569999999999999999999999999999999999999986421 1 11110
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCC-CHHHHHHHHHHhHhhcCCCchhH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRP-SMLDVAHEMGRLKQYLSSPSSLI 976 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-s~~evl~~L~~~~~~~~~~~~~~ 976 (983)
..+... .+........+.+..+.+++.+|++.||++|| +++++.+.|+.+.......++..
T Consensus 223 ---------~~~~~~----~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~~~~~~~~ 284 (294)
T 4eqm_A 223 ---------KHIQDS----VPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHENRANEDVY 284 (294)
T ss_dssp ---------HHHSSC----CCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSSSTTCCCC
T ss_pred ---------HHhhcc----CCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhccCCcchh
Confidence 111110 01000111123557899999999999999998 99999999998876655554443
No 68
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=1.7e-39 Score=349.97 Aligned_cols=259 Identities=28% Similarity=0.414 Sum_probs=210.4
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
.++|...+.||+|+||.||+|.+.++..||||+++.... ..+++.+|++++++++||||+++++++......++||||
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM--SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEY 84 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC--cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEc
Confidence 356888899999999999999998888999999965443 347799999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
+++++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||.++......
T Consensus 85 ~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 158 (268)
T 3sxs_A 85 ISNGCLLNYLRSH---GKGLEPSQLLEMCYDVCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ 158 (268)
T ss_dssp CTTCBHHHHHHHH---GGGCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCSGGGEEECTTCCEEECCTTCEEECCTTC
T ss_pred cCCCcHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCcceEEECCCCCEEEccCccceecchhh
Confidence 9999999998753 345899999999999999999999996 9999999999999999999999999998765332
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
.. ......||+.|+|||.+.+..++.++||||+|+++|||++ |+.||+.... .
T Consensus 159 ~~------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~--------- 212 (268)
T 3sxs_A 159 YV------------SSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN-----S--------- 212 (268)
T ss_dssp EE------------ECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH-----H---------
T ss_pred hh------------cccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccCh-----H---------
Confidence 11 1112356788999999998889999999999999999999 9999863211 1
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
..... +........+ ...+.++.+++.+|++.||++|||++|++++|+.+++..
T Consensus 213 ---~~~~~-~~~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~~ 266 (268)
T 3sxs_A 213 ---EVVLK-VSQGHRLYRP-------HLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREKD 266 (268)
T ss_dssp ---HHHHH-HHTTCCCCCC-------TTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC--
T ss_pred ---HHHHH-HHcCCCCCCC-------CcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhcc
Confidence 11111 1111111111 113457889999999999999999999999999987654
No 69
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=2.9e-39 Score=354.50 Aligned_cols=263 Identities=24% Similarity=0.375 Sum_probs=203.7
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHh--cCCCCccceeeEEec----CCce
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKR--IRHRNLIRIITICSK----PDFK 739 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~----~~~~ 739 (983)
.++|...+.||+|+||.||+|+. +++.||||++... ....+.+|.+++.. ++||||+++++++.. ....
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~----~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~ 81 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR----DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQL 81 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG----GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc----cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCcee
Confidence 46788999999999999999998 5899999998543 34566778887777 799999999998644 3457
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHh--------ccCCCCeEeecCCCCCeEeCCCCCEE
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLH--------HHSPIKVVHCDLKPSNILLDEDLTAL 811 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH--------~~~~~~ivH~Dikp~NiLl~~~~~~k 811 (983)
++||||+++|+|.+++. ...+++..+++++.|+++||+||| +.+ |+||||||+|||++.++.+|
T Consensus 82 ~lv~e~~~~g~L~~~l~-----~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~Nill~~~~~~k 153 (301)
T 3q4u_A 82 WLITHYHEMGSLYDYLQ-----LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA---IAHRDLKSKNILVKKNGQCC 153 (301)
T ss_dssp EEEECCCTTCBHHHHHT-----TCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE---EECSCCCGGGEEECTTSCEE
T ss_pred EEehhhccCCCHHHHHh-----hcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC---eecCCCChHhEEEcCCCCEE
Confidence 89999999999999995 346899999999999999999999 664 99999999999999999999
Q ss_pred EccccccccccCCcccccccCCCCccccccCccccccccccccccCCC------CCCccchhHHHHHHHHHHHhC-----
Q 042568 812 VADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK------RASTHGDVYSFGVLLLEIVTG----- 880 (983)
Q Consensus 812 l~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~k~Dv~SlG~il~elltg----- 880 (983)
|+|||+|+.......... .......||+.|+|||.+.+. .+++++||||||+++|||++|
T Consensus 154 l~Dfg~a~~~~~~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~ 224 (301)
T 3q4u_A 154 IADLGLAVMHSQSTNQLD---------VGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNG 224 (301)
T ss_dssp ECCCTTCEEEETTTTEEE---------CCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTT
T ss_pred EeeCCCeeeccccccccc---------ccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcc
Confidence 999999987654322211 112234799999999998876 455799999999999999999
Q ss_pred -----CCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhh-cCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCC
Q 042568 881 -----RRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAK-YAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPS 954 (983)
Q Consensus 881 -----~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs 954 (983)
+.||............+. ..... ......+ .......++.++.+++.+||+.||++|||
T Consensus 225 ~~~~~~~pf~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~dP~~Rps 289 (301)
T 3q4u_A 225 IVEDYKPPFYDVVPNDPSFEDMR-------------KVVCVDQQRPNIP--NRWFSDPTLTSLAKLMKECWYQNPSARLT 289 (301)
T ss_dssp BCCCCCCTTTTTSCSSCCHHHHH-------------HHHTTSCCCCCCC--GGGGGSHHHHHHHHHHHHHCCSSGGGSCC
T ss_pred ccccccccccccCCCCcchhhhh-------------HHHhccCCCCCCC--hhhccCccHHHHHHHHHHHhhcChhhCCC
Confidence 777654333222222211 11111 1111111 11112457788999999999999999999
Q ss_pred HHHHHHHHHHh
Q 042568 955 MLDVAHEMGRL 965 (983)
Q Consensus 955 ~~evl~~L~~~ 965 (983)
++|+++.|+++
T Consensus 290 ~~~i~~~L~~i 300 (301)
T 3q4u_A 290 ALRIKKTLTKI 300 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999999986
No 70
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.7e-39 Score=365.68 Aligned_cols=268 Identities=27% Similarity=0.395 Sum_probs=216.2
Q ss_pred CCCCCCCccccCCcEeEEEEEEC--------CCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCC
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ--------DNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPD 737 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~--------~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 737 (983)
++|.+.+.||+|+||.||+|... .+..||||+++.........++.+|+++++++ +||||+++++++...+
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~ 148 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG 148 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCC
Confidence 57788899999999999999852 23579999997766655668899999999999 9999999999999999
Q ss_pred ceeEEEecccCcccccccccccC------------cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeC
Q 042568 738 FKALVLPLMSNGSLENHLYPSHG------------LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLD 805 (983)
Q Consensus 738 ~~~lv~e~~~~gsL~~~l~~~~~------------~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~ 805 (983)
..++||||+++|+|.+++..... ....+++..++.++.|+++||+|||+.+ |+||||||+||+++
T Consensus 149 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~ 225 (382)
T 3tt0_A 149 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVLVT 225 (382)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEC
T ss_pred ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCcceEEEc
Confidence 99999999999999999875431 1245999999999999999999999996 99999999999999
Q ss_pred CCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCC
Q 042568 806 EDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPT 884 (983)
Q Consensus 806 ~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~ 884 (983)
.++.+||+|||+|+........ .......||+.|+|||++.+..++.++|||||||++|||++ |+.||
T Consensus 226 ~~~~~kL~DFG~a~~~~~~~~~-----------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~ 294 (382)
T 3tt0_A 226 EDNVMKIADFGLARDIHHIDYY-----------KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPY 294 (382)
T ss_dssp TTCCEEECSCSCCCCSSCCCTT-----------CCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred CCCcEEEcccCccccccccccc-----------ccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999876532211 11222457899999999999999999999999999999999 99998
Q ss_pred CcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 042568 885 DVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGR 964 (983)
Q Consensus 885 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 964 (983)
.... ..+ ..+ .+........+ ..++.++.+++.+||+.||++|||++|++++|++
T Consensus 295 ~~~~-----~~~------------~~~-~~~~~~~~~~~-------~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~ 349 (382)
T 3tt0_A 295 PGVP-----VEE------------LFK-LLKEGHRMDKP-------SNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 349 (382)
T ss_dssp TTCC-----HHH------------HHH-HHHTTCCCCCC-------SSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCC-----HHH------------HHH-HHHcCCCCCCC-------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence 5321 111 111 11111111111 1245678999999999999999999999999999
Q ss_pred hHhhcCCCc
Q 042568 965 LKQYLSSPS 973 (983)
Q Consensus 965 ~~~~~~~~~ 973 (983)
+.......+
T Consensus 350 ~~~~~~~~~ 358 (382)
T 3tt0_A 350 IVALTSNQE 358 (382)
T ss_dssp HHHHSCSCC
T ss_pred HHHHHhcCC
Confidence 986655443
No 71
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.7e-39 Score=355.19 Aligned_cols=281 Identities=19% Similarity=0.267 Sum_probs=212.2
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCC--ceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPD--FKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ 743 (983)
++|.+.++||+|+||.||+|... +++.||||+++........+.+.+|++++++++||||+++++++.... ..++||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence 56888999999999999999976 588999999976554445678899999999999999999999997665 679999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe----CCCCCEEEccccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL----DEDLTALVADFGIAK 819 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl----~~~~~~kl~Dfgla~ 819 (983)
||+++++|.+++..... ...+++..++.++.|+++||+|||+.+ |+||||||+||++ +.++.+||+|||+++
T Consensus 89 e~~~~~~L~~~l~~~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~ 164 (319)
T 4euu_A 89 EFCPCGSLYTVLEEPSN-AYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (319)
T ss_dssp ECCTTCBHHHHHHSGGG-TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred eCCCCCCHHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence 99999999999976432 334999999999999999999999996 9999999999999 888889999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccC--------CCCCCccchhHHHHHHHHHHHhCCCCCCcccCCC
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM--------GKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDG 891 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~ 891 (983)
....... .....||+.|+|||++. +..++.++|||||||++|||++|+.||.......
T Consensus 165 ~~~~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~ 230 (319)
T 4euu_A 165 ELEDDEQ--------------FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR 230 (319)
T ss_dssp ECCTTCC--------------BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGG
T ss_pred ecCCCCc--------------eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccc
Confidence 7653221 12246999999999876 5778999999999999999999999996432211
Q ss_pred Cc---hHHHHHhhCCCCCcHHHHHHHhhc-CCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhH
Q 042568 892 SS---LHEWVKRHYPHRLDPIVEKAIAKY-APQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLK 966 (983)
Q Consensus 892 ~~---l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 966 (983)
.. +........+..........-... .....+ ............+.+++.+|++.||++|||++|++++..+..
T Consensus 231 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~ 308 (319)
T 4euu_A 231 RNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMP-VSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL 308 (319)
T ss_dssp GCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCC-TTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHT
T ss_pred hhHHHHHHHhcCCCcccchhhhcccCCccccCccCC-cccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHh
Confidence 11 111111110000000000000000 000000 001123567788999999999999999999999999998654
No 72
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.6e-40 Score=368.87 Aligned_cols=263 Identities=25% Similarity=0.364 Sum_probs=210.8
Q ss_pred CCCCCCCccccCCcEeEEEEEEC------CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCcee
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ------DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKA 740 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~------~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 740 (983)
++|...+.||+|+||.||+|.+. +++.||||+++.........++.+|+.++++++||||+++++++......+
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 150 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF 150 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCE
Confidence 46778899999999999999953 456799999976555555678999999999999999999999999999999
Q ss_pred EEEecccCcccccccccccC---cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC---CEEEcc
Q 042568 741 LVLPLMSNGSLENHLYPSHG---LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL---TALVAD 814 (983)
Q Consensus 741 lv~e~~~~gsL~~~l~~~~~---~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~---~~kl~D 814 (983)
+||||+++|+|.+++..... ....+++..++.++.|+++||+|||+++ |+||||||+|||++.++ .+||+|
T Consensus 151 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~~~~kL~D 227 (367)
T 3l9p_A 151 ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIGD 227 (367)
T ss_dssp EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEEecCCCCceEEECC
Confidence 99999999999999876432 1245999999999999999999999996 99999999999999554 599999
Q ss_pred ccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCc
Q 042568 815 FGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSS 893 (983)
Q Consensus 815 fgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~ 893 (983)
||+|+........ .......||+.|+|||.+.+..++.++|||||||++|||++ |+.||....
T Consensus 228 FG~a~~~~~~~~~-----------~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~----- 291 (367)
T 3l9p_A 228 FGMARDIYRAGYY-----------RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS----- 291 (367)
T ss_dssp CHHHHHHHHHSSC-----------TTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-----
T ss_pred Ccccccccccccc-----------ccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC-----
Confidence 9999865432111 12223468999999999999999999999999999999998 999985321
Q ss_pred hHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 894 LHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 894 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
.. ...+. +........+ ..++.++.+++.+||+.||++|||+.|++++|+.+.+.
T Consensus 292 ~~------------~~~~~-i~~~~~~~~~-------~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 292 NQ------------EVLEF-VTSGGRMDPP-------KNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp HH------------HHHHH-HHTTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HH------------HHHHH-HHcCCCCCCC-------ccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 11 11111 1111111111 12456789999999999999999999999999988654
No 73
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=1.6e-39 Score=356.97 Aligned_cols=264 Identities=29% Similarity=0.469 Sum_probs=205.3
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|...+.||+|+||.||+|.+. ..+|||+++.... .+..+.+.+|++++++++||||+++++++. .+..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEe
Confidence 357888999999999999999864 3689998865432 334578999999999999999999999875 456799999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|+++++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+|+.....
T Consensus 112 ~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~ 185 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQ---ETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp CCSSCBHHHHHHTS---CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCSSSEEECTTSCEEECCCCSSCC----
T ss_pred cCCCCcHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHhCC---EeeCCCChhhEEEcCCCCEEEccCCCceecccc
Confidence 99999999998643 456899999999999999999999996 999999999999999999999999999865432
Q ss_pred cccccccCCCCccccccCccccccccccccccC---CCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM---GKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
... .......||+.|+|||.+. +..++.++||||||+++|||++|+.||...... .
T Consensus 186 ~~~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~----~------ 244 (307)
T 3lb7_A 186 SGS-----------QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR----D------ 244 (307)
T ss_dssp -------------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH----H------
T ss_pred ccc-----------ccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcH----H------
Confidence 111 1122346999999999886 567889999999999999999999998642110 0
Q ss_pred CCCCCcHHHHHHHhh-cCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcC
Q 042568 902 YPHRLDPIVEKAIAK-YAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLS 970 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~ 970 (983)
.+...+.. ...... ...+..++.++.+++.+|++.+|++||++.|++++|+.+.....
T Consensus 245 -------~~~~~~~~~~~~~~~----~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~p 303 (307)
T 3lb7_A 245 -------QIIFMVGRGYASPDL----SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp -------HHHHHHHHTCCCCCS----TTSCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred -------HHHHHHhcCCCCcch----hhhhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhcc
Confidence 01111111 111111 11123356789999999999999999999999999999987654
No 74
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=2.1e-39 Score=362.90 Aligned_cols=253 Identities=21% Similarity=0.275 Sum_probs=206.4
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-----chhHHHHHHHHHHHhcCCCCccceeeEEecCCce
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-----EITGSFKRECQILKRIRHRNLIRIITICSKPDFK 739 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 739 (983)
.++|.+.+.||+|+||.||+|... +|+.||||+++..... ...+.+.+|++++++++||||+++++++......
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 457888999999999999999975 6889999999765432 1357899999999999999999999999999999
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC----CEEEccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL----TALVADF 815 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~----~~kl~Df 815 (983)
++||||+++|+|.+++.. ...+++..+..++.||++||+|||+.+ |+||||||+||+++.++ .+||+||
T Consensus 91 ~lv~e~~~gg~L~~~l~~----~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~~~vkl~DF 163 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQ----KESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDF 163 (361)
T ss_dssp EEEEECCCSCBHHHHHTT----CSCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCC
T ss_pred EEEEEcCCCCcHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEeCCCCCccCEEEEec
Confidence 999999999999999864 346899999999999999999999996 99999999999998877 7999999
Q ss_pred cccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchH
Q 042568 816 GIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLH 895 (983)
Q Consensus 816 gla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~ 895 (983)
|+++...... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||... ...
T Consensus 164 G~a~~~~~~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~-----~~~ 224 (361)
T 2yab_A 164 GLAHEIEDGV--------------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TKQ 224 (361)
T ss_dssp SSCEECCTTC--------------CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SHH
T ss_pred CCceEcCCCC--------------ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC-----CHH
Confidence 9998765321 112346999999999999999999999999999999999999998532 111
Q ss_pred HHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 896 EWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
+ ........... . ....|...+.++.+++.+|+..||++|||+.|++++
T Consensus 225 ~------------~~~~i~~~~~~--~---~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h 273 (361)
T 2yab_A 225 E------------TLANITAVSYD--F---DEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (361)
T ss_dssp H------------HHHHHHTTCCC--C---CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred H------------HHHHHHhcCCC--C---CchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 1 11111111110 0 011233456778999999999999999999999964
No 75
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=5.1e-39 Score=349.25 Aligned_cols=258 Identities=23% Similarity=0.375 Sum_probs=208.6
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
.++|...+.||+|+||.||+|.+.++..||||+++..... .+++.+|++++++++||||+++++++......++||||
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~--~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 100 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS--EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 100 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBC--HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCC--HHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence 3567788999999999999999998889999999755433 47799999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
+++++|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++......
T Consensus 101 ~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~ 174 (283)
T 3gen_A 101 MANGCLLNYLREM---RHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE 174 (283)
T ss_dssp CTTCBHHHHHHCG---GGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH
T ss_pred cCCCcHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCccceEEEcCCCCEEEccccccccccccc
Confidence 9999999998753 345999999999999999999999996 9999999999999999999999999998764322
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
. .......||+.|+|||.+.+..++.++||||+|+++|||++ |+.||.....
T Consensus 175 ~------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~--------------- 227 (283)
T 3gen_A 175 Y------------TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN--------------- 227 (283)
T ss_dssp H------------HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCH---------------
T ss_pred c------------ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccCh---------------
Confidence 1 11122357889999999998899999999999999999998 9999864211
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
....+. +........+ ...+..+.+++.+|++.||++|||++|++++|+++.+.
T Consensus 228 --~~~~~~-~~~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 228 --SETAEH-IAQGLRLYRP-------HLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp --HHHHHH-HHTTCCCCCC-------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --hHHHHH-HhcccCCCCC-------CcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 011111 1111111111 11346788999999999999999999999999998764
No 76
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=3.4e-39 Score=357.89 Aligned_cols=249 Identities=23% Similarity=0.287 Sum_probs=204.9
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|...+.||+|+||.||+|+.. +++.||||+++... .......+.+|+++++.++||||+++++++...+..++||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 56888999999999999999965 68899999996542 2234577899999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++|+|.+++.. ...+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 85 E~~~gg~L~~~l~~----~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 157 (337)
T 1o6l_A 85 EYANGGELFFHLSR----ERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGIS 157 (337)
T ss_dssp ECCTTCBHHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred eCCCCCcHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCCHHHEEECCCCCEEEeeccchhhccc
Confidence 99999999998864 346899999999999999999999996 99999999999999999999999999985432
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
.. .......||+.|+|||++.+..++.++||||+||++|||++|+.||... ...
T Consensus 158 ~~-------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~-------- 211 (337)
T 1o6l_A 158 DG-------------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHE-------- 211 (337)
T ss_dssp TT-------------CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS-----SHH--------
T ss_pred CC-------------CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC-----CHH--------
Confidence 11 1123357999999999999999999999999999999999999998532 111
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRP-----SMLDVAHE 961 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~evl~~ 961 (983)
...+....... ..| ...+.++.+++.+|++.||++|| +++|+++|
T Consensus 212 ----~~~~~i~~~~~--~~p-------~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h 261 (337)
T 1o6l_A 212 ----RLFELILMEEI--RFP-------RTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261 (337)
T ss_dssp ----HHHHHHHHCCC--CCC-------TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred ----HHHHHHHcCCC--CCC-------CCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence 11111111111 111 12346789999999999999999 89999876
No 77
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=3.1e-39 Score=355.55 Aligned_cols=275 Identities=24% Similarity=0.312 Sum_probs=204.2
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCc-chhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTG-EITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|...+.||+|+||+||+|+..+++.||||++...... .....+.+|++++++++||||+++++++...+..++|||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 3678899999999999999999988999999998654332 245778999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|+++ ++.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++.....
T Consensus 100 ~~~~-~l~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~ 172 (311)
T 3niz_A 100 FMEK-DLKKVLDEN---KTGLQDSQIKIYLYQLLRGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLARAFGIP 172 (311)
T ss_dssp CCSE-EHHHHHHTC---TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEETTSC
T ss_pred CCCC-CHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCchHhEEECCCCCEEEccCcCceecCCC
Confidence 9985 777776543 345899999999999999999999996 999999999999999999999999999876432
Q ss_pred cccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
.. ......||+.|+|||.+.+ ..++.++||||+||++|||++|+.||..... ...+..+......
T Consensus 173 ~~-------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-~~~~~~i~~~~~~ 238 (311)
T 3niz_A 173 VR-------------SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTD-DDQLPKIFSILGT 238 (311)
T ss_dssp CC----------------CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSST-TTHHHHHHHHHCC
T ss_pred cc-------------cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHHCC
Confidence 11 1122468999999999876 5689999999999999999999999975322 2222222221111
Q ss_pred ---CCCcHHHH--HHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 904 ---HRLDPIVE--KAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 904 ---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.......+ ........................++.+++.+|++.||++|||++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 301 (311)
T 3niz_A 239 PNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH 301 (311)
T ss_dssp CCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred CChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 11100000 00000000000000011112245678999999999999999999999975
No 78
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=2.5e-39 Score=362.24 Aligned_cols=268 Identities=26% Similarity=0.416 Sum_probs=213.4
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC------CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCc
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ------DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDF 738 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~------~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 738 (983)
..++|...+.||+|+||.||+|... +++.||||+++.....+..+.+.+|++++++++||||+++++++...+.
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 124 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP 124 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc
Confidence 3468889999999999999999974 3478999999766555567889999999999999999999999999999
Q ss_pred eeEEEecccCcccccccccccCc--------------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCC
Q 042568 739 KALVLPLMSNGSLENHLYPSHGL--------------------SHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLK 798 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~--------------------~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dik 798 (983)
.++||||+++|+|.+++...... ...+++..++.++.|+++||+|||+++ |+|||||
T Consensus 125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlk 201 (343)
T 1luf_A 125 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK---FVHRDLA 201 (343)
T ss_dssp CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCS
T ss_pred eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCC
Confidence 99999999999999998753211 156999999999999999999999996 9999999
Q ss_pred CCCeEeCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHH
Q 042568 799 PSNILLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIV 878 (983)
Q Consensus 799 p~NiLl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ell 878 (983)
|+||+++.++.+||+|||+++........ .......||+.|+|||.+.+..++.++||||||+++|||+
T Consensus 202 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~-----------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~ 270 (343)
T 1luf_A 202 TRNCLVGENMVVKIADFGLSRNIYSADYY-----------KADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIF 270 (343)
T ss_dssp GGGEEECGGGCEEECCCSCHHHHTGGGCB-----------C----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred cceEEECCCCeEEEeecCCCcccccCccc-----------cccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHH
Confidence 99999999999999999999876432211 1122346899999999999889999999999999999999
Q ss_pred h-CCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 042568 879 T-GRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLD 957 (983)
Q Consensus 879 t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~e 957 (983)
+ |+.||.... ..+ .... +........+ ..++.++.+++.+||+.||++|||+.|
T Consensus 271 t~g~~p~~~~~-----~~~------------~~~~-~~~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~ 325 (343)
T 1luf_A 271 SYGLQPYYGMA-----HEE------------VIYY-VRDGNILACP-------ENCPLELYNLMRLCWSKLPADRPSFCS 325 (343)
T ss_dssp TTTCCTTTTSC-----HHH------------HHHH-HHTTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred hcCCCcCCCCC-----hHH------------HHHH-HhCCCcCCCC-------CCCCHHHHHHHHHHcccCcccCCCHHH
Confidence 9 999986321 111 1111 1111111111 124567899999999999999999999
Q ss_pred HHHHHHHhHhhcCC
Q 042568 958 VAHEMGRLKQYLSS 971 (983)
Q Consensus 958 vl~~L~~~~~~~~~ 971 (983)
++++|+++.+....
T Consensus 326 ~~~~L~~~~~~~~~ 339 (343)
T 1luf_A 326 IHRILQRMCERAEG 339 (343)
T ss_dssp HHHHHHHTTC----
T ss_pred HHHHHHHHHhhhhh
Confidence 99999998765543
No 79
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1.2e-39 Score=356.44 Aligned_cols=273 Identities=24% Similarity=0.340 Sum_probs=207.4
Q ss_pred CCCCCCCccccCCcEeEEEEEE-----CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecC--Cce
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-----QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKP--DFK 739 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-----~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~ 739 (983)
++|.+.+.||+|+||.||+|++ .+++.||||++.... .+..+++.+|++++++++||||+++++++... ...
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST-EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 5678899999999999999984 257889999986543 33467899999999999999999999998543 457
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
++||||+++|+|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++
T Consensus 89 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~~~ 162 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKH---KERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTK 162 (295)
T ss_dssp EEEEECCTTCBHHHHHHHC---GGGCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCSCC
T ss_pred EEEEEeCCCCCHHHHHHhc---ccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHhhEEEcCCCeEEEccCcccc
Confidence 9999999999999999754 235899999999999999999999996 9999999999999999999999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
......... .......||..|+|||.+.+..++.++||||||+++|||++|..|+.... ..+..
T Consensus 163 ~~~~~~~~~----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~------~~~~~ 226 (295)
T 3ugc_A 163 VLPQDKEFF----------KVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP------AEFMR 226 (295)
T ss_dssp -----------------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHH------HHHHH
T ss_pred cccCCccee----------eeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCCh------HHHHh
Confidence 765432210 11222457888999999999999999999999999999999999975421 11111
Q ss_pred hhCCCCCcHH----HHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 900 RHYPHRLDPI----VEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 900 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
.......... ....+........ ...++.++.+++.+||+.||++|||++|+++.|+++++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 227 MIGNDKQGQMIVFHLIELLKNNGRLPR-------PDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp HHCTTCCTHHHHHHHHHHHHTTCCCCC-------CTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred hhcCccccchhHHHHHHHHhccCcCCC-------CcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 1111111111 1111111111111 1235678999999999999999999999999999998754
No 80
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=3e-39 Score=361.82 Aligned_cols=257 Identities=20% Similarity=0.303 Sum_probs=206.5
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc----CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT----TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 741 (983)
++|.+.+.||+|+||.||+|... +++.||||+++... .....+.+.+|+++++.++||||+++++++...+..++
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 46888999999999999999965 68999999986432 12245789999999999999999999999999999999
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCC---EEEcccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLT---ALVADFGIA 818 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~---~kl~Dfgla 818 (983)
||||+++|+|.+++.........+++..++.++.|+++||+|||+++ |+||||||+||+++.++. +||+|||++
T Consensus 104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a 180 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVKLGGFGVA 180 (351)
T ss_dssp EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChHHeEEecCCCCCcEEEecCcce
Confidence 99999999998887654333456899999999999999999999996 999999999999986654 999999999
Q ss_pred ccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHH
Q 042568 819 KLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWV 898 (983)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~ 898 (983)
+....... ......||+.|+|||.+.+..++.++||||+||++|+|++|+.||....
T Consensus 181 ~~~~~~~~-------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~---------- 237 (351)
T 3c0i_A 181 IQLGESGL-------------VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK---------- 237 (351)
T ss_dssp EECCTTSC-------------BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH----------
T ss_pred eEecCCCe-------------eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH----------
Confidence 87653221 1223479999999999999999999999999999999999999986421
Q ss_pred HhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 899 KRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
....+......... ....|...+.++.+++.+|++.||++|||+.|++++-
T Consensus 238 --------~~~~~~i~~~~~~~-----~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp 288 (351)
T 3c0i_A 238 --------ERLFEGIIKGKYKM-----NPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHP 288 (351)
T ss_dssp --------HHHHHHHHHTCCCC-----CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred --------HHHHHHHHcCCCCC-----CccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCh
Confidence 01111111111110 0112233567899999999999999999999999753
No 81
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.8e-38 Score=365.40 Aligned_cols=346 Identities=27% Similarity=0.359 Sum_probs=172.8
Q ss_pred cCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCccc
Q 042568 99 NLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSL 178 (983)
Q Consensus 99 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L 178 (983)
.+++|+.|++++|.++ .+| .+..+++|++|+|++|.+++. |. ++++++|++|++++|++++..| + ..+++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~---~~l~~L 114 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--L---ANLTNL 114 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--G---TTCTTC
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--h---cCCCCC
Confidence 3455666666666665 344 356666666666666666633 33 6666666666666666653222 2 244555
Q ss_pred ceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEcc
Q 042568 179 QYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLS 258 (983)
Q Consensus 179 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 258 (983)
++|++++|.+++..+ +..+++|++|++++|.+++. + .++.+++|++|+++ |.+.+ ++. +..+++|++|+++
T Consensus 115 ~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~-~~~--~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTD-LKP--LANLTTLERLDIS 185 (466)
T ss_dssp CEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCC-CGG--GTTCTTCCEEECC
T ss_pred CEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccC-chh--hccCCCCCEEECc
Confidence 555555555443221 34556666666666666542 2 36666666666664 34432 221 4555556666655
Q ss_pred ccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEec
Q 042568 259 YNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNL 338 (983)
Q Consensus 259 ~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 338 (983)
+|.+... ..+..+++|++|++++|++++.. | ++.+++|++|++
T Consensus 186 ~n~l~~~----------~~l~~l~~L~~L~l~~n~l~~~~-------------------------~--~~~l~~L~~L~l 228 (466)
T 1o6v_A 186 SNKVSDI----------SVLAKLTNLESLIATNNQISDIT-------------------------P--LGILTNLDELSL 228 (466)
T ss_dssp SSCCCCC----------GGGGGCTTCSEEECCSSCCCCCG-------------------------G--GGGCTTCCEEEC
T ss_pred CCcCCCC----------hhhccCCCCCEEEecCCcccccc-------------------------c--ccccCCCCEEEC
Confidence 5554321 12334444444444444444332 2 334444555555
Q ss_pred cccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCC
Q 042568 339 SSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGT 418 (983)
Q Consensus 339 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (983)
++|++++. ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|++++..+ +..+++|+.|++++|++++.
T Consensus 229 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 302 (466)
T 1o6v_A 229 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 302 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC
T ss_pred CCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc
Confidence 55544432 234444555555555555544333 4445555555555555543322 44445555555555555432
Q ss_pred CcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCccccc
Q 042568 419 IPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGS 498 (983)
Q Consensus 419 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 498 (983)
.+ +..+++|+.|++++|++++..| +..+++|+. |++++|++++. ..+..+++|+.|++++|++++..| +..
T Consensus 303 ~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~-L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 373 (466)
T 1o6v_A 303 SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR-LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LAN 373 (466)
T ss_dssp GG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE-EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTT
T ss_pred hh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE-eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhc
Confidence 22 4445555555555555554333 344444443 55555544432 234444455555555555544433 444
Q ss_pred ccccceEEeCCCcccc
Q 042568 499 CIALESLNLSGNSLEG 514 (983)
Q Consensus 499 l~~L~~L~Ls~N~l~~ 514 (983)
+++|+.|++++|++++
T Consensus 374 l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 374 LTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCCEEEEC
T ss_pred CCCCCEEeccCCcccC
Confidence 5555555555555543
No 82
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.1e-39 Score=356.77 Aligned_cols=254 Identities=21% Similarity=0.293 Sum_probs=207.8
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|.+.+.||+|+||.||+|... +++.||+|.+.... .....+.+|+++++.++||||+++++++.+.+..++|||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~--~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 81 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG--TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE 81 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT--HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc--ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEE
Confidence 367888999999999999999975 57889999986443 235678999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC--CCCEEEcccccccccc
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE--DLTALVADFGIAKLVK 822 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~--~~~~kl~Dfgla~~~~ 822 (983)
|+++|+|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++. ++.+||+|||+++...
T Consensus 82 ~~~g~~L~~~l~~~---~~~~~~~~~~~i~~qi~~al~~lH~~g---ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~ 155 (321)
T 1tki_A 82 FISGLDIFERINTS---AFELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK 155 (321)
T ss_dssp CCCCCBHHHHHTSS---SCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred eCCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEccCCCCCEEEEECCCCeECC
Confidence 99999999998643 346899999999999999999999996 999999999999987 7899999999998765
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.... .....||+.|+|||.+.+..++.++||||+|+++|+|++|+.||.... ..
T Consensus 156 ~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~-----~~------- 209 (321)
T 1tki_A 156 PGDN--------------FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET-----NQ------- 209 (321)
T ss_dssp TTCE--------------EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS-----HH-------
T ss_pred CCCc--------------cccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCC-----HH-------
Confidence 3221 123579999999999999889999999999999999999999986321 11
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
...+......... ....+.+.+.++.+++.+|+..||++|||+.|++++-.
T Consensus 210 -----~~~~~i~~~~~~~-----~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~ 260 (321)
T 1tki_A 210 -----QIIENIMNAEYTF-----DEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPW 260 (321)
T ss_dssp -----HHHHHHHHTCCCC-----CHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHH
T ss_pred -----HHHHHHHcCCCCC-----ChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcChh
Confidence 1111111111110 11123345678999999999999999999999998754
No 83
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=3.5e-39 Score=356.24 Aligned_cols=264 Identities=27% Similarity=0.394 Sum_probs=213.2
Q ss_pred hCCCCCCCccccCCcEeEEEEEE------CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCce
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL------QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFK 739 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~------~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 739 (983)
.++|...+.||+|+||.||+|.. .+++.||||+++........+++.+|++++++++||||+++++++...+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 35688889999999999999986 235789999997665555668899999999999999999999999999999
Q ss_pred eEEEecccCcccccccccccC--------------------cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCC
Q 042568 740 ALVLPLMSNGSLENHLYPSHG--------------------LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKP 799 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~--------------------~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp 799 (983)
++||||+++|+|.+++..... ....+++..++.++.|+++||+|||+++ |+||||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dikp 178 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMK---LVHRDLAA 178 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTT---EECCCCSG
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCC---Ccccccch
Confidence 999999999999999875432 1234899999999999999999999996 99999999
Q ss_pred CCeEeCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh
Q 042568 800 SNILLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT 879 (983)
Q Consensus 800 ~NiLl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt 879 (983)
+||+++.++.+||+|||+++........ .......+|+.|+|||.+.+..++.++||||+|+++|||++
T Consensus 179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t 247 (314)
T 2ivs_A 179 RNILVAEGRKMKISDFGLSRDVYEEDSY-----------VKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 247 (314)
T ss_dssp GGEEEETTTEEEECCCTTCEECTTTSCE-----------ECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHT
T ss_pred heEEEcCCCCEEEccccccccccccccc-----------eeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHh
Confidence 9999999999999999999876533221 11223457889999999998889999999999999999999
Q ss_pred -CCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 042568 880 -GRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDV 958 (983)
Q Consensus 880 -g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ev 958 (983)
|+.||..... ..+...+. .......+ ..++.++.+++.+|++.||++||++.|+
T Consensus 248 ~g~~p~~~~~~--~~~~~~~~----------------~~~~~~~~-------~~~~~~~~~li~~~l~~dp~~Rps~~~l 302 (314)
T 2ivs_A 248 LGGNPYPGIPP--ERLFNLLK----------------TGHRMERP-------DNCSEEMYRLMLQCWKQEPDKRPVFADI 302 (314)
T ss_dssp TSCCSSTTCCG--GGHHHHHH----------------TTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCCCCCCCH--HHHHHHhh----------------cCCcCCCC-------ccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 9999864211 11111111 11111111 2245678999999999999999999999
Q ss_pred HHHHHHhHhh
Q 042568 959 AHEMGRLKQY 968 (983)
Q Consensus 959 l~~L~~~~~~ 968 (983)
+++|+++.+.
T Consensus 303 ~~~l~~~~~~ 312 (314)
T 2ivs_A 303 SKDLEKMMVK 312 (314)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 84
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.6e-39 Score=358.37 Aligned_cols=267 Identities=23% Similarity=0.325 Sum_probs=208.6
Q ss_pred hCCCCCCCccccCCcEeEEEEEE------CCCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCc
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL------QDNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPDF 738 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~------~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 738 (983)
.++|...+.||+|+||.||+|.. .++..||||+++........+.+.+|+++++++ +||||+++++++...+.
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~ 123 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP 123 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCc
Confidence 35788899999999999999996 235679999997655555568899999999999 89999999999999999
Q ss_pred eeEEEecccCcccccccccccCc-------------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCC
Q 042568 739 KALVLPLMSNGSLENHLYPSHGL-------------------SHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKP 799 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~-------------------~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp 799 (983)
.++||||+++|+|.+++...... ...+++..++.++.|+++||+|||+.+ |+||||||
T Consensus 124 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp 200 (344)
T 1rjb_A 124 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLAA 200 (344)
T ss_dssp CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT---EEETTCSG
T ss_pred cEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCh
Confidence 99999999999999998754321 134899999999999999999999996 99999999
Q ss_pred CCeEeCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh
Q 042568 800 SNILLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT 879 (983)
Q Consensus 800 ~NiLl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt 879 (983)
+||+++.++.+||+|||+++........ .......||+.|+|||.+.+..++.++||||||+++|||++
T Consensus 201 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~-----------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t 269 (344)
T 1rjb_A 201 RNVLVTHGKVVKICDFGLARDIMSDSNY-----------VVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFS 269 (344)
T ss_dssp GGEEEETTTEEEECCCGGGSCGGGCTTS-----------EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTT
T ss_pred hhEEEcCCCcEEeCCCccCcccccCccc-----------eeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHc
Confidence 9999999999999999999866532211 12233568899999999998899999999999999999998
Q ss_pred -CCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 042568 880 -GRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDV 958 (983)
Q Consensus 880 -g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ev 958 (983)
|+.||...... ..+...+........+ ..++.++.+++.+||+.||++|||+.|+
T Consensus 270 ~g~~p~~~~~~~-----------------~~~~~~~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~~l 325 (344)
T 1rjb_A 270 LGVNPYPGIPVD-----------------ANFYKLIQNGFKMDQP-------FYATEEIYIIMQSCWAFDSRKRPSFPNL 325 (344)
T ss_dssp TSCCSSTTCCCS-----------------HHHHHHHHTTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCCcccCCcH-----------------HHHHHHHhcCCCCCCC-------CCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence 99998643211 1111112111111111 1235678999999999999999999999
Q ss_pred HHHHHHhHhhcC
Q 042568 959 AHEMGRLKQYLS 970 (983)
Q Consensus 959 l~~L~~~~~~~~ 970 (983)
+++|+.+.....
T Consensus 326 ~~~l~~~~~~~~ 337 (344)
T 1rjb_A 326 TSFLGCQLADAE 337 (344)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHHH
Confidence 999998866544
No 85
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=3.4e-39 Score=358.10 Aligned_cols=258 Identities=23% Similarity=0.414 Sum_probs=200.7
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcE----EEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTR----IAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~----vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 741 (983)
++|...++||+|+||.||+|.+. +++. ||+|.+.........+++.+|++++++++||||+++++++.... .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~ 93 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence 46888899999999999999964 4443 58888765555556688999999999999999999999998754 789
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
|+||+++|+|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+|+..
T Consensus 94 v~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~ 167 (327)
T 3poz_A 94 ITQLMPFGCLLDYVREH---KDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 167 (327)
T ss_dssp EEECCTTCBHHHHHHHS---TTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTHHHHH
T ss_pred EEEecCCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCChheEEECCCCCEEEccCcceeEc
Confidence 99999999999998754 346899999999999999999999996 999999999999999999999999999876
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~ 900 (983)
...... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||+... ...+..
T Consensus 168 ~~~~~~-----------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~~~---- 230 (327)
T 3poz_A 168 GAEEKE-----------YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASEISS---- 230 (327)
T ss_dssp TTTCC------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHH----
T ss_pred cCCccc-----------ccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC--HHHHHH----
Confidence 543221 11122357889999999999999999999999999999999 999986421 111111
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHh
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQ 967 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 967 (983)
.+........+ ..+..++.+++.+||+.||++||++.|++++|+++..
T Consensus 231 ------------~~~~~~~~~~~-------~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 231 ------------ILEKGERLPQP-------PICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp ------------HHHTTCCCCCC-------TTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred ------------HHHcCCCCCCC-------ccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 11111111111 1244678899999999999999999999999998864
No 86
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=347.70 Aligned_cols=250 Identities=26% Similarity=0.349 Sum_probs=195.5
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-------------------------chhHHHHHHHHHHHh
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-------------------------EITGSFKRECQILKR 720 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-------------------------~~~~~~~~E~~~l~~ 720 (983)
++|...+.||+|+||.||+|... +++.||||++...... ...+++.+|++++++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 92 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK 92 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence 57888999999999999999965 6788999998654311 123578999999999
Q ss_pred cCCCCccceeeEEec--CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCC
Q 042568 721 IRHRNLIRIITICSK--PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLK 798 (983)
Q Consensus 721 l~h~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dik 798 (983)
++||||+++++++.. .+..++||||+++++|.++.. ...+++..++.++.|+++||+|||+++ |+|||||
T Consensus 93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlk 164 (298)
T 2zv2_A 93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT-----LKPLSEDQARFYFQDLIKGIEYLHYQK---IIHRDIK 164 (298)
T ss_dssp CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC-----SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCC
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCC
Confidence 999999999999976 567899999999999988764 346999999999999999999999996 9999999
Q ss_pred CCCeEeCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCC---CCccchhHHHHHHHH
Q 042568 799 PSNILLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKR---ASTHGDVYSFGVLLL 875 (983)
Q Consensus 799 p~NiLl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~k~Dv~SlG~il~ 875 (983)
|+||+++.++.+||+|||+++....... ......||+.|+|||.+.+.. ++.++||||||+++|
T Consensus 165 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~-------------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~ 231 (298)
T 2zv2_A 165 PSNLLVGEDGHIKIADFGVSNEFKGSDA-------------LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLY 231 (298)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSSSC-------------EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHH
T ss_pred HHHEEECCCCCEEEecCCCccccccccc-------------cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHH
Confidence 9999999999999999999987653221 112246999999999988765 478899999999999
Q ss_pred HHHhCCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCH
Q 042568 876 EIVTGRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSM 955 (983)
Q Consensus 876 elltg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~ 955 (983)
||++|+.||... ....+ .......... .+. ....+.++.+++.+|++.||++|||+
T Consensus 232 ~l~~g~~pf~~~-----~~~~~------------~~~~~~~~~~--~~~-----~~~~~~~l~~li~~~l~~dp~~R~s~ 287 (298)
T 2zv2_A 232 CFVFGQCPFMDE-----RIMCL------------HSKIKSQALE--FPD-----QPDIAEDLKDLITRMLDKNPESRIVV 287 (298)
T ss_dssp HHHHSSCSSCCS-----SHHHH------------HHHHHHCCCC--CCS-----SSCCCHHHHHHHHHHTCSCTTTSCCH
T ss_pred HHHHCCCCCCCc-----cHHHH------------HHHHhcccCC--CCC-----ccccCHHHHHHHHHHhhcChhhCCCH
Confidence 999999998532 11111 1111111110 010 01244678999999999999999999
Q ss_pred HHHHHH
Q 042568 956 LDVAHE 961 (983)
Q Consensus 956 ~evl~~ 961 (983)
+|++++
T Consensus 288 ~e~l~h 293 (298)
T 2zv2_A 288 PEIKLH 293 (298)
T ss_dssp HHHTTC
T ss_pred HHHhcC
Confidence 999875
No 87
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=1.1e-38 Score=352.13 Aligned_cols=265 Identities=23% Similarity=0.345 Sum_probs=213.9
Q ss_pred CCCCCCCccccCCcEeEEEEEE------CCCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCce
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL------QDNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPDFK 739 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~------~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 739 (983)
++|...+.||+|+||.||+|.+ .+++.||||+++........+.+.+|+++++++ +||||+++++++...+..
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~ 102 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPT 102 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCc
Confidence 5688889999999999999985 246789999997665545568899999999999 999999999999999999
Q ss_pred eEEEecccCcccccccccccCc--------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeC
Q 042568 740 ALVLPLMSNGSLENHLYPSHGL--------------SHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLD 805 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~--------------~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~ 805 (983)
++||||+++|+|.+++...... ...+++..++.++.|+++||+|||+++ |+||||||+||+++
T Consensus 103 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~ 179 (313)
T 1t46_A 103 LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNILLT 179 (313)
T ss_dssp EEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEE
T ss_pred EEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccceEEEc
Confidence 9999999999999998754321 225899999999999999999999996 99999999999999
Q ss_pred CCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCC
Q 042568 806 EDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPT 884 (983)
Q Consensus 806 ~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~ 884 (983)
.++.+||+|||+++........ .......||+.|+|||.+.+..++.++||||||+++|||++ |+.||
T Consensus 180 ~~~~~kl~Dfg~~~~~~~~~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~ 248 (313)
T 1t46_A 180 HGRITKICDFGLARDIKNDSNY-----------VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPY 248 (313)
T ss_dssp TTTEEEECCCGGGSCTTSCTTS-----------EECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred CCCCEEEccccccccccccccc-----------eeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999876543211 11223468899999999998899999999999999999999 99998
Q ss_pred CcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 042568 885 DVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGR 964 (983)
Q Consensus 885 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 964 (983)
...... ......+........+ ...+.++.+++.+|++.||++|||+.|++++|++
T Consensus 249 ~~~~~~-----------------~~~~~~~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~ 304 (313)
T 1t46_A 249 PGMPVD-----------------SKFYKMIKEGFRMLSP-------EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEK 304 (313)
T ss_dssp TTCCSS-----------------HHHHHHHHHTCCCCCC-------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred Ccccch-----------------hHHHHHhccCCCCCCc-------ccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHH
Confidence 642111 1111111111111111 1245678999999999999999999999999998
Q ss_pred hHhhc
Q 042568 965 LKQYL 969 (983)
Q Consensus 965 ~~~~~ 969 (983)
+.+..
T Consensus 305 ~~~~~ 309 (313)
T 1t46_A 305 QISES 309 (313)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87653
No 88
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=7.2e-39 Score=345.66 Aligned_cols=254 Identities=25% Similarity=0.406 Sum_probs=195.9
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCc---chhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTG---EITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|...+.||+|+||.||+|.+. ++.||||++...... ...+.+.+|+++++.++||||+++++++...+..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 57888899999999999999986 889999998654322 23578899999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC--------CCCEEEccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE--------DLTALVADF 815 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~--------~~~~kl~Df 815 (983)
||+++++|.+++. ...+++..++.++.|+++||+|||+++..+|+||||||+||+++. ++.+||+||
T Consensus 86 e~~~~~~L~~~~~-----~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Df 160 (271)
T 3dtc_A 86 EFARGGPLNRVLS-----GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDF 160 (271)
T ss_dssp ECCTTEEHHHHHT-----SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCC
T ss_pred EcCCCCCHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccC
Confidence 9999999999885 346899999999999999999999986445999999999999986 778999999
Q ss_pred cccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchH
Q 042568 816 GIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLH 895 (983)
Q Consensus 816 gla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~ 895 (983)
|+++...... .....||+.|+|||.+.+..++.++||||+|+++|+|++|+.||..... .
T Consensus 161 g~~~~~~~~~---------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~ 220 (271)
T 3dtc_A 161 GLAREWHRTT---------------KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDG-----L 220 (271)
T ss_dssp CC----------------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCH-----H
T ss_pred Cccccccccc---------------ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----H
Confidence 9998654321 1124689999999999998999999999999999999999999864210 0
Q ss_pred HHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 042568 896 EWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRL 965 (983)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 965 (983)
...............+ ..++.++.+++.+|++.||++|||+.|++++|+++
T Consensus 221 ------------~~~~~~~~~~~~~~~~-------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 221 ------------AVAYGVAMNKLALPIP-------STCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp ------------HHHHHHHTSCCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred ------------HHHHhhhcCCCCCCCC-------cccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 0011111111111111 22456789999999999999999999999999864
No 89
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=6.4e-39 Score=357.10 Aligned_cols=264 Identities=22% Similarity=0.332 Sum_probs=203.1
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCC-------
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPD------- 737 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------- 737 (983)
.++|.+.+.||+|+||.||+|+.. +++.||||+++........+.+.+|++++++++||||+++++++.+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 356888999999999999999976 789999999987665556788999999999999999999999985443
Q ss_pred --------------------------------------------------ceeEEEecccCcccccccccccCcCCCCCH
Q 042568 738 --------------------------------------------------FKALVLPLMSNGSLENHLYPSHGLSHGLDL 767 (983)
Q Consensus 738 --------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~ 767 (983)
..++||||+++|+|.+++..... ....++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~ 163 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS-LEDREH 163 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS-GGGSCH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC-ccchhh
Confidence 27899999999999999976543 344677
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCcccccccCCCCccccccCccccc
Q 042568 768 IQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGS 847 (983)
Q Consensus 768 ~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt 847 (983)
..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++.............. ...........||
T Consensus 164 ~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~-~~~~~~~~~~~gt 239 (332)
T 3qd2_B 164 GVCLHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTP-MPAYATHTGQVGT 239 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECSCC---------------CCCSCC-C
T ss_pred HHHHHHHHHHHHHHHHHHhCC---eeecCCCcccEEEeCCCCEEEeecCcccccccchhhcccccc-ccccccccccCCC
Confidence 889999999999999999996 999999999999999999999999999987654322110000 0001122335799
Q ss_pred cccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccc
Q 042568 848 VGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYN 927 (983)
Q Consensus 848 ~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (983)
+.|+|||.+.+..++.++||||+|+++|||++|..|+... . ..... .. ....+
T Consensus 240 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~-------~------------~~~~~-~~---~~~~~---- 292 (332)
T 3qd2_B 240 KLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER-------V------------RIITD-VR---NLKFP---- 292 (332)
T ss_dssp GGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH-------H------------HHHHH-HH---TTCCC----
T ss_pred cCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH-------H------------HHHHH-hh---ccCCC----
Confidence 9999999999999999999999999999999987774210 0 00111 11 11111
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 928 KVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 928 ~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
..+.....++.+++.+|++.||++|||++|++++
T Consensus 293 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~ 326 (332)
T 3qd2_B 293 LLFTQKYPQEHMMVQDMLSPSPTERPEATDIIEN 326 (332)
T ss_dssp HHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHHS
T ss_pred cccccCChhHHHHHHHHccCCCCcCCCHHHHhhc
Confidence 1223455678999999999999999999999875
No 90
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.6e-38 Score=354.61 Aligned_cols=280 Identities=25% Similarity=0.339 Sum_probs=208.9
Q ss_pred CCHHHHHHHhCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhc--CCCCccceeeEEe
Q 042568 657 VSYKQLIEATGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRI--RHRNLIRIITICS 734 (983)
Q Consensus 657 ~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~ 734 (983)
.....-....++|.+.+.||+|+||.||+|+.. ++.||||++... ....+.+|.+++... +||||+++++++.
T Consensus 27 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~ 101 (337)
T 3mdy_A 27 LPLLVQRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT----EEASWFRETEIYQTVLMRHENILGFIAADI 101 (337)
T ss_dssp SCHHHHTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEE
T ss_pred CCcccccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc----ccchhhhHHHHHHHHhhcCCCeeeEEEEEc
Confidence 333333445678999999999999999999986 899999998543 234556666766655 8999999999997
Q ss_pred cC----CceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccC-----CCCeEeecCCCCCeEeC
Q 042568 735 KP----DFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHS-----PIKVVHCDLKPSNILLD 805 (983)
Q Consensus 735 ~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~-----~~~ivH~Dikp~NiLl~ 805 (983)
.. ...++||||+++|+|.+++.. ..+++..++.++.|+++||+|||+.+ ..+|+||||||+||+++
T Consensus 102 ~~~~~~~~~~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~ 176 (337)
T 3mdy_A 102 KGTGSWTQLYLITDYHENGSLYDYLKS-----TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVK 176 (337)
T ss_dssp ESCGGGCEEEEEECCCTTCBHHHHHHH-----CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEEC
T ss_pred cCCCCCCceEEEEeccCCCcHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEEC
Confidence 76 678999999999999999963 35899999999999999999999871 11399999999999999
Q ss_pred CCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCcc------chhHHHHHHHHHHHh
Q 042568 806 EDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTH------GDVYSFGVLLLEIVT 879 (983)
Q Consensus 806 ~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k------~Dv~SlG~il~ellt 879 (983)
.++.+||+|||+++......... ........||+.|+|||.+.+...+.+ +|||||||++|||++
T Consensus 177 ~~~~~kl~Dfg~a~~~~~~~~~~---------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~t 247 (337)
T 3mdy_A 177 KNGTCCIADLGLAVKFISDTNEV---------DIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVAR 247 (337)
T ss_dssp TTSCEEECCCTTCEECC------------------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCceeeccccccc---------cCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHh
Confidence 99999999999998665332211 111223579999999999988766655 999999999999999
Q ss_pred CC----------CCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhh-cCCCCCccccccchHHHHHHHHHHHhhhcCCC
Q 042568 880 GR----------RPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAK-YAPQHMPIYYNKVWSDVVLELIELGLLCTQYN 948 (983)
Q Consensus 880 g~----------~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~d 948 (983)
|+ .||............ ....+.. ......+. .....+++.++.+++.+||+.|
T Consensus 248 g~~~~~~~~~~~~p~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~d 312 (337)
T 3mdy_A 248 RCVSGGIVEEYQLPYHDLVPSDPSYED-------------MREIVCIKKLRPSFPN--RWSSDECLRQMGKLMTECWAHN 312 (337)
T ss_dssp TBCBTTBCCCCCCTTTTTSCSSCCHHH-------------HHHHHTTSCCCCCCCG--GGGGSHHHHHHHHHHHHHSCSS
T ss_pred ccCcccccccccccHhhhcCCCCchhh-------------hHHHHhhhccCccccc--cchhhHHHHHHHHHHHHhhhhC
Confidence 94 444332222211111 1111111 11111111 1112468889999999999999
Q ss_pred CCCCCCHHHHHHHHHHhHhhcC
Q 042568 949 PSTRPSMLDVAHEMGRLKQYLS 970 (983)
Q Consensus 949 P~~RPs~~evl~~L~~~~~~~~ 970 (983)
|++|||++|++++|+++.+...
T Consensus 313 P~~Rps~~ell~~L~~l~~~~~ 334 (337)
T 3mdy_A 313 PASRLTALRVKKTLAKMSESQD 334 (337)
T ss_dssp GGGSCCHHHHHHHHHHHHHTTT
T ss_pred hhhCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999987653
No 91
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=9.9e-39 Score=366.87 Aligned_cols=255 Identities=22% Similarity=0.288 Sum_probs=205.9
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-chhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-EITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
..++|...+.||+|+||.||+|... +|+.||+|++...... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 3467889999999999999999964 6888999998765432 3456789999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeC---CCCCEEEccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLD---EDLTALVADFGIAK 819 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~---~~~~~kl~Dfgla~ 819 (983)
|||+++|+|.+++.. ...+++..+..++.|+++||+|||+.+ |+||||||+|||++ .++.+||+|||+|+
T Consensus 89 ~E~~~gg~L~~~i~~----~~~~~e~~~~~i~~qil~aL~~lH~~g---ivHrDlKp~NIll~~~~~~~~vkL~DFG~a~ 161 (444)
T 3soa_A 89 FDLVTGGELFEDIVA----REYYSEADASHCIQQILEAVLHCHQMG---VVHRNLKPENLLLASKLKGAAVKLADFGLAI 161 (444)
T ss_dssp ECCCBCCBHHHHHHH----CSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSSTTEEESBSSTTCCEEECCCSSCB
T ss_pred EEeCCCCCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEeccCCCCcEEEccCceeE
Confidence 999999999998875 345899999999999999999999996 99999999999998 56889999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
....... ......||+.|+|||.+.+..++.++||||+||++|+|++|+.||... ..
T Consensus 162 ~~~~~~~-------------~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~-----~~----- 218 (444)
T 3soa_A 162 EVEGEQQ-------------AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE-----DQ----- 218 (444)
T ss_dssp CCCTTCC-------------BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS-----SH-----
T ss_pred EecCCCc-------------eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc-----cH-----
Confidence 6653221 112357999999999999999999999999999999999999998531 11
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
............... ...|...+.++.+++.+|++.||++|||+.|++++
T Consensus 219 -------~~~~~~i~~~~~~~~-----~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h 268 (444)
T 3soa_A 219 -------HRLYQQIKAGAYDFP-----SPEWDTVTPEAKDLINKMLTINPSKRITAAEALKH 268 (444)
T ss_dssp -------HHHHHHHHHTCCCCC-----TTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred -------HHHHHHHHhCCCCCC-----ccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 111222111111111 11234456789999999999999999999999985
No 92
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=5.1e-39 Score=357.37 Aligned_cols=269 Identities=19% Similarity=0.267 Sum_probs=211.3
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeEEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 743 (983)
.++|...+.||+|+||.||+|.. .+++.||||++..... ..++.+|+++++++ +||||+++++++...+..++||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~ 84 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR---APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVL 84 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS---SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc---hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEE
Confidence 35788899999999999999996 5788999999865433 35688999999999 9999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCC-----EEEcccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLT-----ALVADFGIA 818 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~-----~kl~Dfgla 818 (983)
||+ +++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++. +||+|||++
T Consensus 85 e~~-~~~L~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~~---iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a 157 (330)
T 2izr_A 85 ELL-GPSLEDLFDLC---DRTFSLKTVLMIAIQLISRMEYVHSKN---LIYRDVKPENFLIGRPGNKTQQVIHIIDFALA 157 (330)
T ss_dssp ECC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTCTTSEEECCCTTC
T ss_pred EeC-CCCHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeeccCCCCCCceEEEEEcccc
Confidence 999 89999998753 346999999999999999999999996 999999999999998887 999999999
Q ss_pred ccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHH
Q 042568 819 KLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWV 898 (983)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~ 898 (983)
+.+.......... ........||+.|+|||.+.+..++.++|||||||++|||++|+.||.... .....+.+
T Consensus 158 ~~~~~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~--~~~~~~~~ 229 (330)
T 2izr_A 158 KEYIDPETKKHIP------YREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLK--ADTLKERY 229 (330)
T ss_dssp EESBCTTTCCBCC------CCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC--CSSHHHHH
T ss_pred eeeecCCCCcccc------ccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccc--cccHHHHH
Confidence 8765432211100 011234679999999999999999999999999999999999999997532 11111111
Q ss_pred HhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 899 KRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
. ......... + ........+ ++.+++.+|++.||.+||+++++.+.|+++.+..
T Consensus 230 ~------------~i~~~~~~~--~--~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~ 283 (330)
T 2izr_A 230 Q------------KIGDTKRAT--P--IEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK 283 (330)
T ss_dssp H------------HHHHHHHHS--C--HHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred H------------HHHhhhccC--C--HHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence 1 110000000 0 000001133 8999999999999999999999999999887654
No 93
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=4.7e-39 Score=362.59 Aligned_cols=279 Identities=15% Similarity=0.212 Sum_probs=209.3
Q ss_pred HhCCCCCCCccccCCcEeEEEEEECC------CcEEEEEEeecccCcc----------hhHHHHHHHHHHHhcCCCCccc
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQD------NTRIAVKVLDLTTTGE----------ITGSFKRECQILKRIRHRNLIR 728 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~~------~~~vAvK~~~~~~~~~----------~~~~~~~E~~~l~~l~h~niv~ 728 (983)
..++|.+.+.||+|+||.||+|.+.. ++.||||++....... ....+.+|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 34578999999999999999999764 3679999986543210 1123344556667778999999
Q ss_pred eeeEEecC----CceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe
Q 042568 729 IITICSKP----DFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL 804 (983)
Q Consensus 729 l~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl 804 (983)
+++++... ...++||||+ +++|.+++... ...+++..++.|+.|+++||+|||+.+ |+||||||+|||+
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~---~~~l~~~~~~~i~~qi~~~l~~lH~~~---iiHrDlkp~Nill 185 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN---AKRFSRKTVLQLSLRILDILEYIHEHE---YVHGDIKASNLLL 185 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT---TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEE
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEEecCCHHHEEE
Confidence 99998664 4579999999 99999998753 356999999999999999999999996 9999999999999
Q ss_pred C--CCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCC
Q 042568 805 D--EDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRR 882 (983)
Q Consensus 805 ~--~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~ 882 (983)
+ .++.+||+|||+|+.+......... .........||+.|+|||++.+..++.++|||||||++|||++|+.
T Consensus 186 ~~~~~~~~kl~DFG~a~~~~~~~~~~~~------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~ 259 (364)
T 3op5_A 186 NYKNPDQVYLVDYGLAYRYCPEGVHKAY------AADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHL 259 (364)
T ss_dssp ESSCTTCEEECCCTTCEESSGGGCCCCS------SCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCC
T ss_pred ecCCCCeEEEEECCcceecccCCccccc------ccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCC
Confidence 9 8899999999999877643322110 0112233569999999999999999999999999999999999999
Q ss_pred CCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 883 PTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 883 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
||.....+ ..........+...+....++.... ..++.++.+++..||+.+|++||+++++++.|
T Consensus 260 Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l 324 (364)
T 3op5_A 260 PWEDNLKD-PKYVRDSKIRYRENIASLMDKCFPA--------------ANAPGEIAKYMETVKLLDYTEKPLYENLRDIL 324 (364)
T ss_dssp TTGGGTTC-HHHHHHHHHHHHHCHHHHHHHHSCT--------------TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred CccccccC-HHHHHHHHHHhhhhHHHHHHHhccc--------------ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence 99753222 1122222222222222222221100 12356789999999999999999999999999
Q ss_pred HHhHhhcCC
Q 042568 963 GRLKQYLSS 971 (983)
Q Consensus 963 ~~~~~~~~~ 971 (983)
+++.+....
T Consensus 325 ~~~~~~~~~ 333 (364)
T 3op5_A 325 LQGLKAIGS 333 (364)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 998776544
No 94
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.6e-39 Score=355.88 Aligned_cols=252 Identities=23% Similarity=0.295 Sum_probs=204.9
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-----chhHHHHHHHHHHHhcCCCCccceeeEEecCCcee
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-----EITGSFKRECQILKRIRHRNLIRIITICSKPDFKA 740 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 740 (983)
++|...+.||+|+||.||+|... +++.||||+++..... ...+.+.+|++++++++||||+++++++......+
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 46888999999999999999975 6889999998765322 13578999999999999999999999999999999
Q ss_pred EEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC----CEEEcccc
Q 042568 741 LVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL----TALVADFG 816 (983)
Q Consensus 741 lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~----~~kl~Dfg 816 (983)
+||||+++|+|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++ .+||+|||
T Consensus 91 lv~e~~~~~~L~~~l~~----~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg 163 (326)
T 2y0a_A 91 LILELVAGGELFDFLAE----KESLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFG 163 (326)
T ss_dssp EEEECCCSCBHHHHHTT----SSCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEEcCCCCCHHHHHHh----cCCcCHHHHHHHHHHHHHHHHHHHHCC---eEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence 99999999999999864 346899999999999999999999996 99999999999999887 89999999
Q ss_pred ccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHH
Q 042568 817 IAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHE 896 (983)
Q Consensus 817 la~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~ 896 (983)
+++....... .....||+.|+|||++.+..++.++||||+||++|+|++|+.||.... ..+
T Consensus 164 ~a~~~~~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~-----~~~ 224 (326)
T 2y0a_A 164 LAHKIDFGNE--------------FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT-----KQE 224 (326)
T ss_dssp TCEECCTTSC--------------CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS-----HHH
T ss_pred CCeECCCCCc--------------cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCC-----HHH
Confidence 9987643211 122469999999999999999999999999999999999999985321 111
Q ss_pred HHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 897 WVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
. .......... .+ ...+...+..+.+++.+|++.||++|||++|++++
T Consensus 225 ~------------~~~~~~~~~~--~~---~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 272 (326)
T 2y0a_A 225 T------------LANVSAVNYE--FE---DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272 (326)
T ss_dssp H------------HHHHHHTCCC--CC---HHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred H------------HHHHHhcCCC--cC---ccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 1 1111111000 00 11122345678999999999999999999999975
No 95
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=9.9e-39 Score=358.63 Aligned_cols=255 Identities=23% Similarity=0.323 Sum_probs=207.5
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
..++|...+.||+|+||.||+|... +++.||||+++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 106 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 3467889999999999999999965 688999999976543 23457789999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCC---CCEEEccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDED---LTALVADFGIAK 819 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~---~~~kl~Dfgla~ 819 (983)
|||+++|+|.+++.. ...+++..+..++.|+++||+|||+.+ |+||||||+||+++.+ +.+||+|||+++
T Consensus 107 ~e~~~gg~L~~~l~~----~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~ 179 (362)
T 2bdw_A 107 FDLVTGGELFEDIVA----REFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAI 179 (362)
T ss_dssp ECCCCSCBHHHHHTT----CSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEESCSSTTCCEEECCCTTCB
T ss_pred EecCCCCCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEeecCcce
Confidence 999999999988864 345899999999999999999999996 9999999999999865 459999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
...... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||.... ..
T Consensus 180 ~~~~~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~-----~~---- 236 (362)
T 2bdw_A 180 EVNDSE--------------AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED-----QH---- 236 (362)
T ss_dssp CCTTCC--------------SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HH----
T ss_pred EecCCc--------------ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC-----HH----
Confidence 664321 1123579999999999999999999999999999999999999985321 11
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
............. + ...|..++.++.+++.+|++.||++||++.|++++-
T Consensus 237 --------~~~~~i~~~~~~~--~---~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp 286 (362)
T 2bdw_A 237 --------RLYAQIKAGAYDY--P---SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVP 286 (362)
T ss_dssp --------HHHHHHHHTCCCC--C---TTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSH
T ss_pred --------HHHHHHHhCCCCC--C---cccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcCc
Confidence 1111111111111 1 122345667899999999999999999999999763
No 96
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=5.7e-39 Score=352.39 Aligned_cols=272 Identities=24% Similarity=0.355 Sum_probs=210.0
Q ss_pred CCCCCCCccccCCcEeEEEEEE-----CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecC--Cce
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-----QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKP--DFK 739 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-----~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~ 739 (983)
.+|...+.||+|+||.||+|++ .+++.||||++.........+++.+|++++++++||||+++++++... ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 3577789999999999999984 367889999997665555678899999999999999999999999876 667
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
++||||+++|+|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++
T Consensus 101 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~ 174 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKN---KNKINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTK 174 (302)
T ss_dssp EEEEECCTTCBHHHHHHHH---TTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred EEEEEeCCCCcHHHHHHhc---cccCCHHHHHHHHHHHHHHHHHhhcCC---cccCCCchheEEEcCCCCEEECcccccc
Confidence 9999999999999998643 345899999999999999999999996 9999999999999999999999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
........ ........||..|+|||.+.+..++.++||||+|+++|||++|+.|+... ...+..
T Consensus 175 ~~~~~~~~----------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~ 238 (302)
T 4e5w_A 175 AIETDKEY----------YTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSP------MALFLK 238 (302)
T ss_dssp ECCTTCCE----------EECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH------HHHHHH
T ss_pred cccCCCcc----------eeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcch------hhHHhh
Confidence 76543221 11223346889999999999988999999999999999999999986432 111111
Q ss_pred hhCCCCCcHH---HHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHh
Q 042568 900 RHYPHRLDPI---VEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQ 967 (983)
Q Consensus 900 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 967 (983)
...+...... +...+........+ ..++.++.+++.+|++.||++|||++|+++.|+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll~ 302 (302)
T 4e5w_A 239 MIGPTHGQMTVTRLVNTLKEGKRLPCP-------PNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 302 (302)
T ss_dssp HHCSCCGGGHHHHHHHHHHTTCCCCCC-------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred ccCCcccccCHHHHHHHHhccCCCCCC-------CCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Confidence 1111111111 11112211111111 2345789999999999999999999999999998753
No 97
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=1.5e-38 Score=348.38 Aligned_cols=272 Identities=17% Similarity=0.249 Sum_probs=213.9
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeEEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 743 (983)
.++|...+.||+|+||.||+|.. .+++.||||++..... ...+.+|+++++++ +|+|++++++++......++||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~ 85 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD---APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI 85 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT---SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc---cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEE
Confidence 35788899999999999999996 5788999999865432 35688999999999 7999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCC-----EEEcccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLT-----ALVADFGIA 818 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~-----~kl~Dfgla 818 (983)
||+ +++|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++. +||+|||++
T Consensus 86 e~~-~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~ 158 (298)
T 1csn_A 86 DLL-GPSLEDLLDLC---GRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMV 158 (298)
T ss_dssp ECC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECCCTTC
T ss_pred Eec-CCCHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEeccCCCCCCCeEEEEECccc
Confidence 999 99999999753 345899999999999999999999996 999999999999987776 999999999
Q ss_pred ccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHH
Q 042568 819 KLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWV 898 (983)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~ 898 (983)
+............ ........||+.|+|||.+.+..++.++||||||+++|||++|+.||....... ....
T Consensus 159 ~~~~~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~--~~~~- 229 (298)
T 1csn_A 159 KFYRDPVTKQHIP------YREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAAT--NKQK- 229 (298)
T ss_dssp EESBCTTTCCBCC------CCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCC--HHHH-
T ss_pred ccccccccccccc------ccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccc--cHHH-
Confidence 8776432211100 012234579999999999999999999999999999999999999997532111 1111
Q ss_pred HhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCC
Q 042568 899 KRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSS 971 (983)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~ 971 (983)
............. ......++.++.+++.+|++.||++||++++|++.|+++.+....
T Consensus 230 -----------~~~~~~~~~~~~~----~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~ 287 (298)
T 1csn_A 230 -----------YERIGEKKQSTPL----RELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNT 287 (298)
T ss_dssp -----------HHHHHHHHHHSCH----HHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred -----------HHHHHhhccCccH----HHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCC
Confidence 1111100000000 001113457899999999999999999999999999999877554
No 98
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=1.9e-38 Score=353.34 Aligned_cols=269 Identities=25% Similarity=0.393 Sum_probs=213.4
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC--------CCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecC
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ--------DNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKP 736 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~--------~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 736 (983)
.++|...+.||+|+||.||+|.+. ++..||||+++........+++.+|+++++++ +||||+++++++...
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 357888999999999999999863 46789999997665555677899999999999 899999999999999
Q ss_pred CceeEEEecccCcccccccccccCc------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe
Q 042568 737 DFKALVLPLMSNGSLENHLYPSHGL------------SHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL 804 (983)
Q Consensus 737 ~~~~lv~e~~~~gsL~~~l~~~~~~------------~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl 804 (983)
+..++||||+++|+|.+++...... ...+++..++.++.|+++||+|||+.+ |+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCccceEEE
Confidence 9999999999999999998754321 234899999999999999999999996 9999999999999
Q ss_pred CCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCC
Q 042568 805 DEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRP 883 (983)
Q Consensus 805 ~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p 883 (983)
+.++.+||+|||+++........ .......+|+.|+|||.+.+..++.++||||||+++|||++ |+.|
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p 259 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNIDYY-----------KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP 259 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTSSE-----------ECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCS
T ss_pred cCCCCEEEccccccccccccccc-----------cccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999876532211 11122357889999999988889999999999999999999 9999
Q ss_pred CCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 884 TDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 884 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
|... ...+ .... +........+ ..++.++.+++.+|++.||++|||+.|++++|+
T Consensus 260 ~~~~-----~~~~------------~~~~-~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 314 (334)
T 2pvf_A 260 YPGI-----PVEE------------LFKL-LKEGHRMDKP-------ANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 314 (334)
T ss_dssp STTC-----CHHH------------HHHH-HHHTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred cCcC-----CHHH------------HHHH-HhcCCCCCCC-------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 8532 1111 1111 1111111111 124567899999999999999999999999999
Q ss_pred HhHhhcCCCc
Q 042568 964 RLKQYLSSPS 973 (983)
Q Consensus 964 ~~~~~~~~~~ 973 (983)
++.+.....+
T Consensus 315 ~l~~~~~~~~ 324 (334)
T 2pvf_A 315 RILTLTTNEE 324 (334)
T ss_dssp HHHHHHC---
T ss_pred HHHhccccCc
Confidence 9987655443
No 99
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=7.8e-39 Score=353.79 Aligned_cols=274 Identities=24% Similarity=0.302 Sum_probs=212.3
Q ss_pred CCCCCccccCCcEeEEEEEEC-----CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecC--CceeE
Q 042568 669 FCPSSLIGSGRFGHVYKGVLQ-----DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKP--DFKAL 741 (983)
Q Consensus 669 f~~~~~iG~G~~g~Vy~~~~~-----~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~l 741 (983)
|...+.||+|+||.||++.+. +++.||||+++........+.+.+|++++++++||||+++++++... ...++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 378899999999999988753 57889999998765555677899999999999999999999999774 56789
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
||||+++|+|.+++.. ..+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++..
T Consensus 113 v~e~~~~~~L~~~l~~-----~~~~~~~~~~i~~~l~~~l~~LH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 184 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPR-----HSIGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAV 184 (318)
T ss_dssp EECCCTTCBHHHHGGG-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred EEecccCCcHHHHHhh-----CCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEEcCCCCEEECCccccccc
Confidence 9999999999999964 34899999999999999999999996 999999999999999999999999999877
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
...... ........||..|+|||.+.+..++.++||||+|+++|||++|+.||...... .... ..
T Consensus 185 ~~~~~~----------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~---~~~~--~~ 249 (318)
T 3lxp_A 185 PEGHEY----------YRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTK---FLEL--IG 249 (318)
T ss_dssp CTTCSE----------EEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH---HHHH--HC
T ss_pred cccccc----------cccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchh---hhhh--hc
Confidence 543221 11222346888999999999988999999999999999999999998532110 0000 00
Q ss_pred CCCCC--cHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCCC
Q 042568 902 YPHRL--DPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSSP 972 (983)
Q Consensus 902 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~ 972 (983)
..... .......+........ ...++.++.+++.+||+.||++|||++|+++.|+++.+....+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~ 315 (318)
T 3lxp_A 250 IAQGQMTVLRLTELLERGERLPR-------PDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQGQ 315 (318)
T ss_dssp SCCHHHHHHHHHHHHHTTCCCCC-------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC-
T ss_pred ccccchhHHHHHHHHhcccCCCC-------CccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhccC
Confidence 00000 0011111111111111 1235578999999999999999999999999999998776543
No 100
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=6.7e-39 Score=355.47 Aligned_cols=258 Identities=24% Similarity=0.370 Sum_probs=203.7
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcE----EEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTR----IAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~----vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 741 (983)
++|...+.||+|+||.||+|.+. +++. ||+|.+..........++.+|+.++++++||||+++++++. .+..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 46778899999999999999964 4444 78888765544445577889999999999999999999986 456889
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
||||+++|+|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+|||++.++.+||+|||+++..
T Consensus 92 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 165 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQH---RGALGPQLLLNWGVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADLL 165 (325)
T ss_dssp EEECCTTCBSHHHHHSS---GGGSCTTHHHHHHHHHHHHHHHHHHTT---CCCSCCSSTTEEESSSSCEEECSCSGGGGS
T ss_pred EEEeCCCCCHHHHHHHc---cccCCHHHHHHHHHHHHHHHHHHHhCC---CCCCccchheEEECCCCeEEECCCCccccc
Confidence 99999999999998753 245888999999999999999999996 999999999999999999999999999877
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~ 900 (983)
...... .......||..|+|||.+.+..++.++||||||+++|||++ |+.||.... ......
T Consensus 166 ~~~~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~~~~~~---- 228 (325)
T 3kex_A 166 PPDDKQ-----------LLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLR--LAEVPD---- 228 (325)
T ss_dssp CCCTTC-----------CC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC--TTHHHH----
T ss_pred Cccccc-----------ccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccC--HHHHHH----
Confidence 543221 11223468889999999998899999999999999999999 999986421 111111
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHh
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQ 967 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 967 (983)
.+........+ ..++.++.+++.+||+.||++|||++|++++|+++..
T Consensus 229 ------------~~~~~~~~~~~-------~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~ 276 (325)
T 3kex_A 229 ------------LLEKGERLAQP-------QICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR 276 (325)
T ss_dssp ------------HHHTTCBCCCC-------TTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred ------------HHHcCCCCCCC-------CcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 11111111111 1133467889999999999999999999999998854
No 101
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=4.3e-39 Score=376.85 Aligned_cols=265 Identities=27% Similarity=0.432 Sum_probs=213.2
Q ss_pred CCCCCCCccccCCcEeEEEEEECC-CcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQD-NTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~-~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
++|...+.||+|+||.||+|.+.. +..||||.++.... ..++|.+|++++++++||||++++++|...+..++||||
T Consensus 220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM--EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc--chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 456778899999999999999764 78899999965433 367899999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
+++|+|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+++......
T Consensus 298 ~~~g~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 372 (495)
T 1opk_A 298 MTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT 372 (495)
T ss_dssp CTTCBHHHHHHHSC--TTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCEEECCTTCEECCTTCC
T ss_pred cCCCCHHHHHHhcC--cCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChhhEEECCCCcEEEeecccceeccCCc
Confidence 99999999997543 356899999999999999999999996 9999999999999999999999999998764321
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
. .......+|+.|+|||.+.+..++.++|||||||++|||++ |+.||.... ...
T Consensus 373 ~------------~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~--~~~----------- 427 (495)
T 1opk_A 373 Y------------TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQ----------- 427 (495)
T ss_dssp E------------ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGG-----------
T ss_pred e------------eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC--HHH-----------
Confidence 1 11122356789999999998899999999999999999999 999986421 111
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCCCchh
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSSPSSL 975 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~~~~ 975 (983)
+.+. +........+ ..++.++.+++.+||+.||++|||+.|+++.|+.+.+......+.
T Consensus 428 ----~~~~-~~~~~~~~~~-------~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~~~~~~~~ 486 (495)
T 1opk_A 428 ----VYEL-LEKDYRMERP-------EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDEV 486 (495)
T ss_dssp ----HHHH-HHTTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSSSCHHHHH
T ss_pred ----HHHH-HHcCCCCCCC-------CCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhccccchHH
Confidence 1111 1111111111 235578899999999999999999999999999886544333333
No 102
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.5e-39 Score=360.18 Aligned_cols=250 Identities=24% Similarity=0.316 Sum_probs=200.8
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 741 (983)
.++|...++||+|+||.||+|+.. +++.||||+++... .......+.+|.++++.+ +||||+++++++...+..++
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 468999999999999999999965 68899999997542 223456788999999998 79999999999999999999
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
||||+++|+|.+++... ..+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+|+..
T Consensus 102 v~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NILl~~~g~ikL~DFG~a~~~ 174 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKS----RRFDEARARFYAAEIISALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEG 174 (353)
T ss_dssp EEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred EEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCCHHHEEECCCCCEEEccccceeec
Confidence 99999999999988753 45899999999999999999999996 999999999999999999999999999853
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
.... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||.... .
T Consensus 175 ~~~~-------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~-----~------- 229 (353)
T 3txo_A 175 ICNG-------------VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAEN-----E------- 229 (353)
T ss_dssp CC----------------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSS-----H-------
T ss_pred ccCC-------------ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCC-----H-------
Confidence 3211 12233579999999999999899999999999999999999999986321 1
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCH------HHHHHH
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSM------LDVAHE 961 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~------~evl~~ 961 (983)
.+..+....... ..|. ....++.+++.+|++.||++||++ +|+++|
T Consensus 230 -----~~~~~~i~~~~~--~~p~-------~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~h 281 (353)
T 3txo_A 230 -----DDLFEAILNDEV--VYPT-------WLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRH 281 (353)
T ss_dssp -----HHHHHHHHHCCC--CCCT-------TSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTS
T ss_pred -----HHHHHHHHcCCC--CCCC-------CCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhC
Confidence 111222221111 1111 134678899999999999999998 778764
No 103
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=361.44 Aligned_cols=270 Identities=21% Similarity=0.289 Sum_probs=213.8
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCC--ceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPD--FKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ 743 (983)
++|.+.++||+|+||.||+|.+. +++.||||++.........+.+.+|++++++++||||+++++++.... ..++||
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~ 88 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence 46888999999999999999976 588999999976554445678899999999999999999999997765 679999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe----CCCCCEEEccccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL----DEDLTALVADFGIAK 819 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl----~~~~~~kl~Dfgla~ 819 (983)
||+++|+|.+++..... ...+++..++.++.|+++||+|||+.+ |+||||||+||++ +.++.+||+|||+++
T Consensus 89 e~~~~g~L~~~l~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~ 164 (396)
T 4eut_A 89 EFCPCGSLYTVLEEPSN-AYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (396)
T ss_dssp CCCTTEEHHHHTTSGGG-TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred ecCCCCCHHHHHHhhhc-ccCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence 99999999999976432 334999999999999999999999996 9999999999999 788889999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCC--------CCCCccchhHHHHHHHHHHHhCCCCCCcccCCC
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG--------KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDG 891 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~ 891 (983)
....... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.......
T Consensus 165 ~~~~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~ 230 (396)
T 4eut_A 165 ELEDDEQ--------------FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR 230 (396)
T ss_dssp ECCCGGG--------------SSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTT
T ss_pred EccCCCc--------------cccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCccc
Confidence 7653221 122469999999998765 567889999999999999999999996533222
Q ss_pred CchHHHHHhhCCCCCcHHHHHHHhhcCCC-----------------CCccccccchHHHHHHHHHHHhhhcCCCCCCCCC
Q 042568 892 SSLHEWVKRHYPHRLDPIVEKAIAKYAPQ-----------------HMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPS 954 (983)
Q Consensus 892 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs 954 (983)
.... .+...+...... ..+ ............+.+++.+|++.||++||+
T Consensus 231 ~~~~-------------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s 296 (396)
T 4eut_A 231 RNKE-------------VMYKIITGKPSGAISGVQKAENGPIDWSGDMP-VSCSLSRGLQVLLTPVLANILEADQEKCWG 296 (396)
T ss_dssp TCHH-------------HHHHHHHSCCTTCCEEEECSTTCCEEEESSCC-TTCSSCHHHHHHHHHHHHHHSCCCTTTSCC
T ss_pred chHH-------------HHHHHhcCCCcccchhheeccCCCcccCccCC-cccccchHHHhhchHHHHHhhccChhhhcc
Confidence 2111 111111111100 000 011123567888999999999999999999
Q ss_pred HHHHHHHHHHhHhh
Q 042568 955 MLDVAHEMGRLKQY 968 (983)
Q Consensus 955 ~~evl~~L~~~~~~ 968 (983)
+.|++++++++.+.
T Consensus 297 ~~e~l~~l~~il~~ 310 (396)
T 4eut_A 297 FDQFFAETSDILHR 310 (396)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988654
No 104
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-39 Score=354.87 Aligned_cols=249 Identities=24% Similarity=0.399 Sum_probs=202.4
Q ss_pred CCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|.+.+.||+|+||.||+|.+ .+++.||||++.... ..+...++.+|+++++.++||||+++++++..++..++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 5788899999999999999996 578899999986542 1223568999999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+ +|+|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||++++++.+||+|||++.....
T Consensus 89 E~~-~g~l~~~l~~----~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~ 160 (336)
T 3h4j_B 89 EYA-GGELFDYIVE----KKRMTEDEGRRFFQQIICAIEYCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSNIMTD 160 (336)
T ss_dssp CCC-CEEHHHHHHH----HCSCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCSTTTEEECTTCCEEECCSSCTBTTTT
T ss_pred ECC-CCcHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCchhhEEEcCCCCEEEEEeccceeccC
Confidence 999 6788888764 345899999999999999999999996 99999999999999999999999999986643
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCC-CccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRA-STHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.. ......||+.|+|||.+.+..+ ++++||||+||++|+|++|+.||+....... .
T Consensus 161 ~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~---------~ 217 (336)
T 3h4j_B 161 GN--------------FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL---------F 217 (336)
T ss_dssp SB--------------TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC---------B
T ss_pred Cc--------------ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH---------H
Confidence 21 1123479999999999998776 7899999999999999999999964321100 0
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
. .+ .. .....+ ...+.++.+++.+|++.||.+|||++|++++-.
T Consensus 218 ~-~i--------~~-~~~~~p-------~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~ 261 (336)
T 3h4j_B 218 K-KV--------NS-CVYVMP-------DFLSPGAQSLIRRMIVADPMQRITIQEIRRDPW 261 (336)
T ss_dssp C-CC--------CS-SCCCCC-------TTSCHHHHHHHHTTSCSSGGGSCCHHHHTTCHH
T ss_pred H-HH--------Hc-CCCCCc-------ccCCHHHHHHHHHHcCCChhHCcCHHHHHhChh
Confidence 0 00 00 000011 123467889999999999999999999998754
No 105
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=5.7e-39 Score=372.36 Aligned_cols=259 Identities=24% Similarity=0.415 Sum_probs=210.0
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
.++|...+.||+|+||.||+|.+.++..||||.++... ...+.|.+|++++++++||||+++++++. .+..++||||
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~ 263 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS--MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEF 263 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS--BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECC
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC--ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEee
Confidence 34677789999999999999999888999999997543 24678999999999999999999999986 5678999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
+++|+|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+++......
T Consensus 264 ~~~g~L~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~ 338 (454)
T 1qcf_A 264 MAKGSLLDFLKSDE--GSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNE 338 (454)
T ss_dssp CTTCBHHHHHHSHH--HHTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH
T ss_pred cCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc
Confidence 99999999997542 235889999999999999999999996 9999999999999999999999999998764321
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
. .......+|+.|+|||.+.+..++.++|||||||++|||++ |+.||.... ..
T Consensus 339 ~------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~-----~~--------- 392 (454)
T 1qcf_A 339 Y------------TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS-----NP--------- 392 (454)
T ss_dssp H------------HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-----HH---------
T ss_pred e------------eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCC-----HH---------
Confidence 1 11122346889999999998899999999999999999999 999986321 11
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
++.+. +........+ ..++.++.+++.+||+.||++|||+++|++.|+.+....
T Consensus 393 ---~~~~~-i~~~~~~~~~-------~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~ 446 (454)
T 1qcf_A 393 ---EVIRA-LERGYRMPRP-------ENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTAT 446 (454)
T ss_dssp ---HHHHH-HHHTCCCCCC-------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred ---HHHHH-HHcCCCCCCC-------CCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcc
Confidence 11111 1111111111 235578999999999999999999999999999886543
No 106
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.8e-39 Score=351.76 Aligned_cols=259 Identities=27% Similarity=0.403 Sum_probs=201.0
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEecc
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPLM 746 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 746 (983)
++|...+.||+|+||.||+|++. ++.||||.+... ...+.+.+|++++++++||||+++++++. +..++||||+
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~ 81 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE---SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYA 81 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST---THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECC
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh---hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcC
Confidence 46778899999999999999986 788999998533 24578999999999999999999999886 3579999999
Q ss_pred cCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCC-EEEccccccccccCCc
Q 042568 747 SNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLT-ALVADFGIAKLVKGID 825 (983)
Q Consensus 747 ~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~-~kl~Dfgla~~~~~~~ 825 (983)
++|+|.+++..... ...+++..++.++.|+++||+|||+.++.+|+||||||+||+++.++. +||+|||++......
T Consensus 82 ~~~~L~~~l~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~- 159 (307)
T 2eva_A 82 EGGSLYNVLHGAEP-LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH- 159 (307)
T ss_dssp TTCBHHHHHHCSSS-EECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC--------
T ss_pred CCCCHHHHHhccCC-CCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc-
Confidence 99999999875432 235789999999999999999999943225999999999999998886 799999999755321
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHR 905 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~ 905 (983)
.....||+.|+|||.+.+..++.++||||||+++|||++|+.||+...... ...
T Consensus 160 ---------------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~---~~~-------- 213 (307)
T 2eva_A 160 ---------------MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPA---FRI-------- 213 (307)
T ss_dssp --------------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSH---HHH--------
T ss_pred ---------------cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccH---HHH--------
Confidence 112358999999999999999999999999999999999999986432110 000
Q ss_pred CcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCC
Q 042568 906 LDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSS 971 (983)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~ 971 (983)
... ......... ...++..+.+++.+|++.||++|||++|++++|+.+.+....
T Consensus 214 ----~~~-~~~~~~~~~-------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 267 (307)
T 2eva_A 214 ----MWA-VHNGTRPPL-------IKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPG 267 (307)
T ss_dssp ----HHH-HHTTCCCCC-------BTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCC
T ss_pred ----HHH-HhcCCCCCc-------ccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccC
Confidence 000 111010000 122456788999999999999999999999999999876644
No 107
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=1.7e-38 Score=367.74 Aligned_cols=253 Identities=28% Similarity=0.408 Sum_probs=206.6
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCC-ceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPD-FKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~lv~e~ 745 (983)
++|...+.||+|+||.||+|.+. ++.||||+++... ..+.|.+|++++++++||||+++++++...+ ..++||||
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~ 268 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT---TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred HHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch---HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence 46777899999999999999986 7899999997543 3578999999999999999999999987665 78999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
+++|+|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+++......
T Consensus 269 ~~~g~L~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~ 343 (450)
T 1k9a_A 269 MAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ 343 (450)
T ss_dssp CTTCBHHHHHHHHC--TTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTSCEEECCCTTCEECC---
T ss_pred cCCCcHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEECCCCCEEEeeCCCcccccccc
Confidence 99999999997542 334799999999999999999999996 9999999999999999999999999998543211
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
....+|+.|+|||.+.+..++.++||||||+++|||++ |+.||..... ..
T Consensus 344 ----------------~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~--~~----------- 394 (450)
T 1k9a_A 344 ----------------DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KD----------- 394 (450)
T ss_dssp -------------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCT--TT-----------
T ss_pred ----------------cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HH-----------
Confidence 11257889999999999999999999999999999998 9999864321 11
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
.... +........+ ..++.++.+++.+||+.||++|||+.|+++.|+.+.+..
T Consensus 395 ----~~~~-i~~~~~~~~p-------~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~~ 447 (450)
T 1k9a_A 395 ----VVPR-VEKGYKMDAP-------DGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTHE 447 (450)
T ss_dssp ----HHHH-HHTTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred ----HHHH-HHcCCCCCCC-------CcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHhh
Confidence 1111 1111111111 235678999999999999999999999999999987653
No 108
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3e-38 Score=343.79 Aligned_cols=264 Identities=26% Similarity=0.409 Sum_probs=211.7
Q ss_pred CCCCCC-ccccCCcEeEEEEEEC---CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 668 GFCPSS-LIGSGRFGHVYKGVLQ---DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 668 ~f~~~~-~iG~G~~g~Vy~~~~~---~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
+|.+.+ .||+|+||.||+|... ++..||||+++........+++.+|++++++++||||+++++++. .+..++||
T Consensus 10 ~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~lv~ 88 (287)
T 1u59_A 10 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLVM 88 (287)
T ss_dssp GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEE
T ss_pred HhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-CCCcEEEE
Confidence 444555 8999999999999854 577899999977655556788999999999999999999999994 45689999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++....
T Consensus 89 e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~ 162 (287)
T 1u59_A 89 EMAGGGPLHKFLVGK---REEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGA 162 (287)
T ss_dssp ECCTTEEHHHHHTTC---TTTSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred EeCCCCCHHHHHHhC---CccCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCchheEEEcCCCCEEECcccceeeecc
Confidence 999999999998643 346899999999999999999999996 99999999999999999999999999987654
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
..... .......||+.|+|||.+.+..++.++||||||+++|||++ |+.||.... ....
T Consensus 163 ~~~~~----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~-------- 222 (287)
T 1u59_A 163 DDSYY----------TARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEV-------- 222 (287)
T ss_dssp CSCEE----------CCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--THHH--------
T ss_pred Cccee----------eccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC--HHHH--------
Confidence 32211 11222357899999999988889999999999999999998 999986421 1111
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCCCc
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSSPS 973 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~~ 973 (983)
. ..+........+ ..++.++.+++.+|++.||++||++.|++++|+.+..+...+.
T Consensus 223 -------~-~~i~~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~ 278 (287)
T 1u59_A 223 -------M-AFIEQGKRMECP-------PECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKV 278 (287)
T ss_dssp -------H-HHHHTTCCCCCC-------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTC
T ss_pred -------H-HHHhcCCcCCCC-------CCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcc
Confidence 1 111111111111 2345789999999999999999999999999999987765544
No 109
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2e-38 Score=341.34 Aligned_cols=257 Identities=26% Similarity=0.401 Sum_probs=210.4
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEecc
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPLM 746 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 746 (983)
++|...+.||+|+||.||+|...+++.||+|.+...... .+.+.+|++++++++||||+++++++...+..++||||+
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~--~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS--EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBC--HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCC--HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence 467788999999999999999988889999999765433 478999999999999999999999999999999999999
Q ss_pred cCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCcc
Q 042568 747 SNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGIDE 826 (983)
Q Consensus 747 ~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~ 826 (983)
++++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++.......
T Consensus 86 ~~~~L~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~ 159 (267)
T 3t9t_A 86 EHGCLSDYLRTQ---RGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY 159 (267)
T ss_dssp TTCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred CCCcHHHHHhhC---cccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEECCCCCEEEcccccccccccccc
Confidence 999999998753 345899999999999999999999996 99999999999999999999999999986643211
Q ss_pred cccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCCC
Q 042568 827 SVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPHR 905 (983)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~~ 905 (983)
.......||..|+|||...+..++.++||||+|+++|||++ |+.||.... ..+
T Consensus 160 ------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~-----~~~--------- 213 (267)
T 3t9t_A 160 ------------TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS-----NSE--------- 213 (267)
T ss_dssp ------------HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-----HHH---------
T ss_pred ------------cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCC-----HHH---------
Confidence 11122357889999999998889999999999999999999 899986321 111
Q ss_pred CcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 906 LDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
..+. +........+ ...+.++.+++.+|++.||++|||++|++++|+++.+.
T Consensus 214 ---~~~~-i~~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 214 ---VVED-ISTGFRLYKP-------RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp ---HHHH-HHTTCCCCCC-------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ---HHHH-HhcCCcCCCC-------ccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 1111 1111111111 11346788999999999999999999999999998764
No 110
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=1.5e-38 Score=350.13 Aligned_cols=246 Identities=26% Similarity=0.303 Sum_probs=203.6
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|...+.||+|+||.||+|+.. +|+.||+|+++.... ....+.+.+|+.+++.++||||+++++++.+....++||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 46888999999999999999975 688999999965431 224567889999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++|+|.+++.. ...+++..++.++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++....
T Consensus 86 e~~~gg~L~~~l~~----~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~ 158 (318)
T 1fot_A 86 DYIEGGELFSLLRK----SQRFPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYVPD 158 (318)
T ss_dssp CCCCSCBHHHHHHH----TSSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSCEECSS
T ss_pred eCCCCCCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChheEEEcCCCCEEEeecCcceecCC
Confidence 99999999999875 345899999999999999999999996 99999999999999999999999999986542
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
. .....||+.|+|||.+.+..++.++||||+||++|||++|+.||.... .
T Consensus 159 ~----------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~--------- 208 (318)
T 1fot_A 159 V----------------TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN-----T--------- 208 (318)
T ss_dssp C----------------BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS-----H---------
T ss_pred c----------------cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC-----H---------
Confidence 1 123479999999999999999999999999999999999999985321 1
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRP-----SMLDVAHE 961 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~evl~~ 961 (983)
.......+.... ..+ .....++.+++.+|++.||++|| +++|+++|
T Consensus 209 ---~~~~~~i~~~~~--~~p-------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h 259 (318)
T 1fot_A 209 ---MKTYEKILNAEL--RFP-------PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH 259 (318)
T ss_dssp ---HHHHHHHHHCCC--CCC-------TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred ---HHHHHHHHhCCC--CCC-------CCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence 111122221111 111 11346788999999999999999 89999865
No 111
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=3.4e-39 Score=366.35 Aligned_cols=260 Identities=20% Similarity=0.227 Sum_probs=207.1
Q ss_pred HHHHHhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCC
Q 042568 661 QLIEATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPD 737 (983)
Q Consensus 661 ~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 737 (983)
++....++|...++||+|+||.||+|+.. +++.||+|+++... .....+.+.+|+++++.++||||+++++++.+.+
T Consensus 63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~ 142 (410)
T 3v8s_A 63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR 142 (410)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence 44445678999999999999999999976 58889999986532 1123456889999999999999999999999999
Q ss_pred ceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccc
Q 042568 738 FKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGI 817 (983)
Q Consensus 738 ~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgl 817 (983)
..++||||+++|+|.+++.. ..+++..++.++.|++.||+|||+.+ |+||||||+|||++.++.+||+|||+
T Consensus 143 ~~~lV~E~~~gg~L~~~l~~-----~~~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFG~ 214 (410)
T 3v8s_A 143 YLYMVMEYMPGGDLVNLMSN-----YDVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGT 214 (410)
T ss_dssp EEEEEECCCTTEEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTT
T ss_pred EEEEEEeCCCCCcHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeeECCCCCEEEeccce
Confidence 99999999999999998863 35899999999999999999999996 99999999999999999999999999
Q ss_pred cccccCCcccccccCCCCccccccCccccccccccccccCCCC----CCccchhHHHHHHHHHHHhCCCCCCcccCCCCc
Q 042568 818 AKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKR----ASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSS 893 (983)
Q Consensus 818 a~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~ 893 (983)
|+....... ......+||+.|+|||++.+.. ++.++|||||||++|||++|+.||... .
T Consensus 215 a~~~~~~~~------------~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~-----~ 277 (410)
T 3v8s_A 215 CMKMNKEGM------------VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD-----S 277 (410)
T ss_dssp CEECCTTSE------------EECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS-----S
T ss_pred eEeeccCCc------------ccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC-----C
Confidence 987643221 1123457999999999988755 789999999999999999999998632 1
Q ss_pred hHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCC--CCCHHHHHHHH
Q 042568 894 LHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPST--RPSMLDVAHEM 962 (983)
Q Consensus 894 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--RPs~~evl~~L 962 (983)
.. ......+........|. +...+.++.+++.+|+..+|++ ||+++|+++|-
T Consensus 278 ~~------------~~~~~i~~~~~~~~~p~-----~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp 331 (410)
T 3v8s_A 278 LV------------GTYSKIMNHKNSLTFPD-----DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHL 331 (410)
T ss_dssp HH------------HHHHHHHTHHHHCCCCT-----TCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSG
T ss_pred hh------------hHHHHHHhccccccCCC-----cccccHHHHHHHHHHccChhhhCCCCCHHHHhcCc
Confidence 11 11111111110000110 1124577899999999999988 99999999874
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-37 Score=362.56 Aligned_cols=358 Identities=25% Similarity=0.383 Sum_probs=197.8
Q ss_pred CCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCcccceeeccccccc
Q 042568 110 KNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLT 189 (983)
Q Consensus 110 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~ 189 (983)
.+.+.+.++. ..+++|+.|++++|.++ .+|. +..+++|++|+|++|.+++. |. + ..+++|++|++++|.++
T Consensus 33 ~~~~~~~i~~--~~l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~---~~l~~L~~L~l~~n~l~ 103 (466)
T 1o6v_A 33 KTNVTDTVSQ--TDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDI-TP-L---KNLTKLVDILMNNNQIA 103 (466)
T ss_dssp CSSTTSEECH--HHHHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCC-GG-G---TTCTTCCEEECCSSCCC
T ss_pred ccccccccCh--hHhccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCc-hh-h---hccccCCEEECCCCccc
Confidence 3344444332 34678888899888887 5664 78888888888888888743 32 3 36677777777777766
Q ss_pred CCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCC
Q 042568 190 GEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNT 269 (983)
Q Consensus 190 ~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 269 (983)
+..+ +..+++|++|++++|++++..+ +.++++|++|++++|.++ .++. +..+++|++|+++ |.+..
T Consensus 104 ~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~----- 169 (466)
T 1o6v_A 104 DITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTD----- 169 (466)
T ss_dssp CCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCC-----
T ss_pred cChh---hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccC-----
Confidence 4433 4566666666666666665433 666666666666666665 2332 4555555555554 22111
Q ss_pred CCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCc
Q 042568 270 NLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPH 349 (983)
Q Consensus 270 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 349 (983)
...+.++++ |++|++++|.+++. +.+..+++|++|++++|.+++..|
T Consensus 170 -----~~~~~~l~~-------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 170 -----LKPLANLTT-------------------------LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp -----CGGGTTCTT-------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred -----chhhccCCC-------------------------CCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-
Confidence 011233333 33333333333321 124555666666666666665443
Q ss_pred ccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCC
Q 042568 350 ELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNL 429 (983)
Q Consensus 350 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L 429 (983)
++.+++|+.|++++|.+.+. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|.+++..+ +..+++|
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred -ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 55566666666666666542 245555666666666666654433 5555555555555555553222 4555555
Q ss_pred CEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCC
Q 042568 430 EILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSG 509 (983)
Q Consensus 430 ~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 509 (983)
+.|++++|++++..+ +. .+++|+.|+|++|++++..| +..+++|+.|++++
T Consensus 290 ~~L~L~~n~l~~~~~--~~-------------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 290 TNLELNENQLEDISP--IS-------------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp SEEECCSSCCSCCGG--GG-------------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred CeEEcCCCcccCchh--hc-------------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence 555555555554322 34 44444555555555543333 44455555555555
Q ss_pred CcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccc
Q 042568 510 NSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGN 563 (983)
Q Consensus 510 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 563 (983)
|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 341 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 341 NKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 555543 244555555555555555554444 45555555555555555553
No 113
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=1.2e-38 Score=352.32 Aligned_cols=275 Identities=25% Similarity=0.347 Sum_probs=216.6
Q ss_pred CHHHHHHHhCCCCCCCccccCCcEeEEEEEE------CCCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCcccee
Q 042568 658 SYKQLIEATGGFCPSSLIGSGRFGHVYKGVL------QDNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRII 730 (983)
Q Consensus 658 ~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~------~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~ 730 (983)
.........++|...+.||+|+||.||+|.+ .+++.||||+++........+.+.+|+++++++ +||||++++
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 97 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 97 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence 3334444567899999999999999999984 246789999997665555567899999999999 799999999
Q ss_pred eEEecCC-ceeEEEecccCcccccccccccCc------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecC
Q 042568 731 TICSKPD-FKALVLPLMSNGSLENHLYPSHGL------------SHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDL 797 (983)
Q Consensus 731 ~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~------------~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Di 797 (983)
+++...+ ..++||||+++|+|.+++...... ...+++..++.++.|+++||+|||+.+ |+||||
T Consensus 98 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~di 174 (316)
T 2xir_A 98 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDL 174 (316)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTT---CCCSCC
T ss_pred EEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCC---cccccC
Confidence 9987655 489999999999999998754321 123889999999999999999999996 999999
Q ss_pred CCCCeEeCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHH
Q 042568 798 KPSNILLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEI 877 (983)
Q Consensus 798 kp~NiLl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~el 877 (983)
||+||+++.++.+||+|||+++........ .......||+.|+|||.+.+..++.++||||||+++|||
T Consensus 175 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-----------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l 243 (316)
T 2xir_A 175 AARNILLSEKNVVKICDFGLARDIYKDPDY-----------VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 243 (316)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTS-----------EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred ccceEEECCCCCEEECCCccccccccCccc-----------eeccCCCcceeecCchhhccccccchhHHHHHHHHHHHH
Confidence 999999999999999999999866432211 122335688999999999999999999999999999999
Q ss_pred Hh-CCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHH
Q 042568 878 VT-GRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSML 956 (983)
Q Consensus 878 lt-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ 956 (983)
++ |+.||...... ..+...+........+ .....++.+++.+|++.||++|||+.
T Consensus 244 ~t~g~~p~~~~~~~-----------------~~~~~~~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~ 299 (316)
T 2xir_A 244 FSLGASPYPGVKID-----------------EEFCRRLKEGTRMRAP-------DYTTPEMYQTMLDCWHGEPSQRPTFS 299 (316)
T ss_dssp HTTSCCSSTTCCCS-----------------HHHHHHHHHTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred HhCCCCCCcccchh-----------------HHHHHHhccCccCCCC-------CCCCHHHHHHHHHHcCCChhhCcCHH
Confidence 98 99998642111 1111111111111111 11346789999999999999999999
Q ss_pred HHHHHHHHhHhhcC
Q 042568 957 DVAHEMGRLKQYLS 970 (983)
Q Consensus 957 evl~~L~~~~~~~~ 970 (983)
|++++|+.+.+...
T Consensus 300 ell~~L~~~~~~~~ 313 (316)
T 2xir_A 300 ELVEHLGNLLQANA 313 (316)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999976543
No 114
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=2.3e-38 Score=357.52 Aligned_cols=258 Identities=21% Similarity=0.313 Sum_probs=202.6
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 742 (983)
++|...++||+|+||.||+|+.. +++.||||+++.... .+..+.+.+|..+++++ +||||+++++++...+..++|
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV 131 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 131 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEE
Confidence 57888999999999999999976 577899999976532 22346688999999887 899999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|||+++|+|.+++... ..+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+...
T Consensus 132 ~E~~~gg~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFGla~~~~ 204 (396)
T 4dc2_A 132 IEYVNGGDLMFHMQRQ----RKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL 204 (396)
T ss_dssp EECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEcCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEECCCCCEEEeecceeeecc
Confidence 9999999999988753 45899999999999999999999996 9999999999999999999999999998532
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||.........
T Consensus 205 ~~~-------------~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~--------- 262 (396)
T 4dc2_A 205 RPG-------------DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNP--------- 262 (396)
T ss_dssp CTT-------------CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC-------------
T ss_pred cCC-------------CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccccccc---------
Confidence 211 1223457999999999999999999999999999999999999999643211100
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCH------HHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSM------LDVAHE 961 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~------~evl~~ 961 (983)
.......+.+.+.... ...| .....++.+++.+|++.||++||++ +|+++|
T Consensus 263 ~~~~~~~~~~~i~~~~-~~~p-------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~H 319 (396)
T 4dc2_A 263 DQNTEDYLFQVILEKQ-IRIP-------RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH 319 (396)
T ss_dssp --CCHHHHHHHHHHCC-CCCC-------TTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHS
T ss_pred chhhHHHHHHHHhccc-cCCC-------CcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcC
Confidence 0001111112221111 1111 1245678999999999999999995 677654
No 115
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=3.6e-38 Score=348.21 Aligned_cols=277 Identities=25% Similarity=0.334 Sum_probs=192.5
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|...+.||+|+||.||+|... +++.||||+++..........+.+|++++++++||||+++++++...+..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 457889999999999999999964 6889999999766555556789999999999999999999999999999999999
Q ss_pred cccCcccccccccccC--cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 745 LMSNGSLENHLYPSHG--LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~--~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|++ |+|.+++..... ....+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 998 589888764321 1245899999999999999999999996 9999999999999999999999999998764
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
.... ......||+.|+|||.+.+ ..++.++||||+||++|||++|+.||..... ...+.......
T Consensus 160 ~~~~-------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~i~~~~ 225 (317)
T 2pmi_A 160 IPVN-------------TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTND-EEQLKLIFDIM 225 (317)
T ss_dssp SCCC-------------CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHH
T ss_pred CCcc-------------cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHh
Confidence 3211 1122468999999999876 4689999999999999999999999864211 11111111110
Q ss_pred C--CCCCcHHHHHHHhhcC---CCCCccc-----cccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 902 Y--PHRLDPIVEKAIAKYA---PQHMPIY-----YNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 902 ~--~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
. +....+.... ..... ....+.. ..........++.+++.+|++.||++|||++|++++
T Consensus 226 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h 294 (317)
T 2pmi_A 226 GTPNESLWPSVTK-LPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH 294 (317)
T ss_dssp CSCCTTTCGGGGG-CTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred CCCChhHhhhhhh-hhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence 0 0000000000 00000 0000000 000001234678999999999999999999999976
No 116
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=1.1e-38 Score=347.60 Aligned_cols=271 Identities=27% Similarity=0.421 Sum_probs=218.8
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|...+.||+|+||.||+|.+. ++..||||.+..... ..+++.+|++++++++||||+++++++...+..++|||
T Consensus 12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 89 (288)
T 3kfa_A 12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM--EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 89 (288)
T ss_dssp GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCST--HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence 456888899999999999999976 478899999865432 46789999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|+++++|.+++.... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||.+......
T Consensus 90 ~~~~~~L~~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~ 164 (288)
T 3kfa_A 90 FMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGD 164 (288)
T ss_dssp CCTTEEHHHHHHHCC--TTTSCHHHHHHHHHHHHHHHHHHHHHT---CCCSCCSGGGEEECGGGCEEECCCCGGGTSCSS
T ss_pred cCCCCcHHHHHHhcc--cCCccHhHHHHHHHHHHHHHHHHHHCC---ccCCCCCcceEEEcCCCCEEEccCccceeccCC
Confidence 999999999997543 456899999999999999999999996 999999999999999999999999999876532
Q ss_pred cccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCC
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
.. .......+|+.|+|||.+.+..++.++||||+|+++|+|++ |+.||.... ....
T Consensus 165 ~~------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~--~~~~--------- 221 (288)
T 3kfa_A 165 TY------------TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQV--------- 221 (288)
T ss_dssp SS------------EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGH---------
T ss_pred cc------------ccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHH---------
Confidence 21 11222457889999999998899999999999999999999 999986421 1111
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCCCchhHHHhh
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSSPSSLIEEAA 980 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~~~~~~~~~ 980 (983)
.+. +........+ ..++.++.+++.+|++.||++|||++|+++.|+.+.+....+.+...+-.
T Consensus 222 ------~~~-~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~~~~~~~~~~~~ 284 (288)
T 3kfa_A 222 ------YEL-LEKDYRMERP-------EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKELG 284 (288)
T ss_dssp ------HHH-HHTTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ------HHH-HhccCCCCCC-------CCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhccccchhhcccc
Confidence 111 1111111111 22456789999999999999999999999999999877665555544443
No 117
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=5.6e-39 Score=349.90 Aligned_cols=261 Identities=31% Similarity=0.473 Sum_probs=196.8
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|...+.||+|+||.||+|+.. ..||||+++.... ....+.+.+|++++++++||||+++++++ .....++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence 467889999999999999999864 3599999865543 33457899999999999999999999976 4556799999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|+++++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++.....
T Consensus 100 ~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 173 (289)
T 3og7_A 100 WCEGSSLYHHLHAS---ETKFEMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW 173 (289)
T ss_dssp CCCEEEHHHHHTTC------CCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEEEECCCC--------
T ss_pred ecCCCcHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHhCC---cccccCccceEEECCCCCEEEccceeccccccc
Confidence 99999999988643 356899999999999999999999996 999999999999999999999999999865432
Q ss_pred cccccccCCCCccccccCccccccccccccccC---CCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM---GKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
... .......||+.|+|||.+. +..++.++||||+|+++|||++|+.||...... .
T Consensus 174 ~~~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~--------- 232 (289)
T 3og7_A 174 SGS-----------HQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR-D--------- 232 (289)
T ss_dssp ---------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCH-H---------
T ss_pred ccc-----------ccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchH-H---------
Confidence 211 1122356999999999986 567888999999999999999999998642111 0
Q ss_pred CCCCCcHHHHHHHhh-cCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHh
Q 042568 902 YPHRLDPIVEKAIAK-YAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQ 967 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 967 (983)
.+...+.. ..... .......++.++.+++.+|++.||++|||+.|+++.|+++.+
T Consensus 233 -------~~~~~~~~~~~~~~----~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 233 -------QIIEMVGRGSLSPD----LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp -------HHHHHHHHTSCCCC----TTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred -------HHHHHhcccccCcc----hhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 11111111 11111 111123456789999999999999999999999999998864
No 118
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=3.8e-39 Score=351.03 Aligned_cols=273 Identities=24% Similarity=0.322 Sum_probs=202.0
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCc-chhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTG-EITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
++|...+.||+|+||.||+|...+++.||||++...... .....+.+|++++++++||||+++++++...+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 468889999999999999999988999999998655432 2357788999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
+++ +|.+++... ...+++..+..++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~~-~l~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 154 (288)
T 1ob3_A 82 LDQ-DLKKLLDVC---EGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGIPV 154 (288)
T ss_dssp CSE-EHHHHHHTS---TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC--
T ss_pred cCC-CHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEeECccccccCccc
Confidence 985 888877643 346899999999999999999999996 9999999999999999999999999998664221
Q ss_pred ccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
. ......||+.|+|||.+.+ ..++.++||||+||++|||++|+.||..... ...+..........
T Consensus 155 ~-------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~ 220 (288)
T 1ob3_A 155 R-------------KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSE-ADQLMRIFRILGTP 220 (288)
T ss_dssp --------------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCCC
T ss_pred c-------------ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHHCCC
Confidence 1 1122468999999999876 4589999999999999999999999864211 11111111110000
Q ss_pred C--CcHHHHHHHhhc---CCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 905 R--LDPIVEKAIAKY---APQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 905 ~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
. ..+.... .... .....+............++.+++.+|++.||++|||++|++++
T Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 281 (288)
T 1ob3_A 221 NSKNWPNVTE-LPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH 281 (288)
T ss_dssp CTTTSTTGGG-STTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred Chhhchhhhc-ccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 0 0000000 0000 00000011111122356778999999999999999999999875
No 119
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.7e-39 Score=371.71 Aligned_cols=264 Identities=22% Similarity=0.225 Sum_probs=208.5
Q ss_pred HHHHHHHhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEec
Q 042568 659 YKQLIEATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSK 735 (983)
Q Consensus 659 ~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 735 (983)
+.++....++|...++||+|+||+||+|+.. +++.||||+++.... ......+.+|.+++..++||||++++++|.+
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 145 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD 145 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence 3445556788999999999999999999976 478899999965321 1234458899999999999999999999999
Q ss_pred CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccc
Q 042568 736 PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADF 815 (983)
Q Consensus 736 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Df 815 (983)
.+..++||||+++|+|.+++... ...+++..++.++.|++.||+|||+.+ |+||||||+|||++.++.+||+||
T Consensus 146 ~~~~~lV~Ey~~gg~L~~~l~~~---~~~l~e~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILl~~~g~vkL~DF 219 (437)
T 4aw2_A 146 DNNLYLVMDYYVGGDLLTLLSKF---EDRLPEEMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADF 219 (437)
T ss_dssp SSEEEEEECCCTTCBHHHHHHTT---TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCC
T ss_pred CCEEEEEEecCCCCcHHHHHHHc---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeeEcCCCCEEEcch
Confidence 99999999999999999999753 346999999999999999999999996 999999999999999999999999
Q ss_pred cccccccCCcccccccCCCCccccccCccccccccccccccC-----CCCCCccchhHHHHHHHHHHHhCCCCCCcccCC
Q 042568 816 GIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM-----GKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHD 890 (983)
Q Consensus 816 gla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~ 890 (983)
|+|+....... ......+||+.|+|||++. ...++.++|||||||++|||++|+.||...
T Consensus 220 Gla~~~~~~~~------------~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~--- 284 (437)
T 4aw2_A 220 GSCLKLMEDGT------------VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE--- 284 (437)
T ss_dssp TTCEECCTTSC------------EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCS---
T ss_pred hhhhhcccCCC------------cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCC---
Confidence 99986643221 1122357999999999987 567899999999999999999999998632
Q ss_pred CCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCC--CCCHHHHHHH
Q 042568 891 GSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPST--RPSMLDVAHE 961 (983)
Q Consensus 891 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--RPs~~evl~~ 961 (983)
... +.....+........|.. +...+.++.+++.+|+..+|++ ||+++|+++|
T Consensus 285 --~~~------------~~~~~i~~~~~~~~~p~~----~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H 339 (437)
T 4aw2_A 285 --SLV------------ETYGKIMNHKERFQFPTQ----VTDVSENAKDLIRRLICSREHRLGQNGIEDFKKH 339 (437)
T ss_dssp --SHH------------HHHHHHHTHHHHCCCCSS----CCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred --Chh------------HHHHhhhhccccccCCcc----cccCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence 111 111111111000011110 1124567899999999988888 9999999976
No 120
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=7.3e-39 Score=347.52 Aligned_cols=258 Identities=22% Similarity=0.380 Sum_probs=198.4
Q ss_pred CCCCCCCccccCCcEeEEEEEECC----CcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQD----NTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~----~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
++|...+.||+|+||.||+|.... +..||+|.++........+.+.+|+.++++++||||+++++++. .+..++|
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~lv 93 (281)
T 1mp8_A 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWII 93 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEEE
Confidence 578888999999999999999643 45699999876555556778999999999999999999999985 4567999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|||+++++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 94 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 167 (281)
T 1mp8_A 94 MELCTLGELRSFLQVR---KYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYME 167 (281)
T ss_dssp EECCTTEEHHHHHHHT---TTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC--------
T ss_pred EecCCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHEEECCCCCEEECccccccccC
Confidence 9999999999998743 346899999999999999999999996 9999999999999999999999999998764
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhh
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~ 901 (983)
..... ......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||..... ...
T Consensus 168 ~~~~~------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~--~~~------- 226 (281)
T 1mp8_A 168 DSTYY------------KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN--NDV------- 226 (281)
T ss_dssp -----------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGH-------
T ss_pred ccccc------------ccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCH--HHH-------
Confidence 32211 1122357889999999998899999999999999999997 9999864211 111
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
....... .....+ ..++.++.+++.+|++.||++|||+.|++++|+++.+.
T Consensus 227 --------~~~i~~~-~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 277 (281)
T 1mp8_A 227 --------IGRIENG-ERLPMP-------PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 277 (281)
T ss_dssp --------HHHHHTT-CCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------HHHHHcC-CCCCCC-------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 1111111 100011 22456789999999999999999999999999998654
No 121
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=9.1e-39 Score=356.52 Aligned_cols=286 Identities=25% Similarity=0.302 Sum_probs=202.3
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHH--HHhcCCCCccceeeEEec-----CCce
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQI--LKRIRHRNLIRIITICSK-----PDFK 739 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~l~~~~~~-----~~~~ 739 (983)
++|...+.||+|+||.||+|+. +++.||||+++... ...+..|.++ +..++||||+++++++.. ....
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~----~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN----RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc----hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 5788899999999999999987 58999999986432 3444555555 445899999999986532 2356
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhcc---------CCCCeEeecCCCCCeEeCCCCCE
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHH---------SPIKVVHCDLKPSNILLDEDLTA 810 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~---------~~~~ivH~Dikp~NiLl~~~~~~ 810 (983)
++||||+++|+|.+++.. ...++..+..++.|+++||+|||+. + |+||||||+|||++.++.+
T Consensus 88 ~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~---ivH~Dikp~Nill~~~~~~ 159 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSL-----HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPA---ISHRDLNSRNVLVKNDGTC 159 (336)
T ss_dssp EEEECCCTTCBHHHHHHH-----CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCC---EECSSCSGGGEEECTTSCE
T ss_pred EEEEecCCCCcHHHHHhh-----cccchhHHHHHHHHHHHHHHHHHhhhccccccccc---eeecccccceEEEcCCCcE
Confidence 899999999999999964 3458999999999999999999998 6 9999999999999999999
Q ss_pred EEccccccccccCCcccccccCCCCccccccCccccccccccccccCC-------CCCCccchhHHHHHHHHHHHhCCCC
Q 042568 811 LVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-------KRASTHGDVYSFGVLLLEIVTGRRP 883 (983)
Q Consensus 811 kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~k~Dv~SlG~il~elltg~~p 883 (983)
||+|||+++.+......... ..........||+.|+|||++.+ ..++.++|||||||++|||++|+.|
T Consensus 160 kL~DFG~a~~~~~~~~~~~~-----~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p 234 (336)
T 3g2f_A 160 VISDFGLSMRLTGNRLVRPG-----EEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTD 234 (336)
T ss_dssp EECCCTTCEECSSSSCC--------------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGG
T ss_pred EEeeccceeecccccccCcc-----ccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCc
Confidence 99999999876543211000 00112223579999999999887 4567889999999999999999887
Q ss_pred CCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcC-CCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 884 TDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYA-PQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 884 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
|............+..................... ....+.. ......++.++.+++.+||+.||++|||++|+++.|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L 313 (336)
T 3g2f_A 235 LFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEA-WKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERM 313 (336)
T ss_dssp GSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTT-CCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred CCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcc-cccccchHHHHHHHHHHHhcCChhhCcchHHHHHHH
Confidence 64322111110011111111111111111111111 1111111 112344778899999999999999999999999999
Q ss_pred HHhHhhcCC
Q 042568 963 GRLKQYLSS 971 (983)
Q Consensus 963 ~~~~~~~~~ 971 (983)
+++......
T Consensus 314 ~~ll~~~~~ 322 (336)
T 3g2f_A 314 AELMMIWER 322 (336)
T ss_dssp HHHHHCCCC
T ss_pred HHHHHHHHh
Confidence 999755443
No 122
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=8e-39 Score=349.31 Aligned_cols=274 Identities=21% Similarity=0.274 Sum_probs=202.0
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-chhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-EITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
++|...+.||+|+||+||+|... +++.||||++...... .....+.+|++++++++||||+++++++...+..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 46888999999999999999975 6889999999765433 345788899999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|+++ ++.+.+... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++.....
T Consensus 82 ~~~~-~l~~~~~~~---~~~l~~~~~~~~~~ql~~~l~~lH~~~---ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 154 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSC---NGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAFGIP 154 (292)
T ss_dssp CCSE-EHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCSC
T ss_pred cCCC-CHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccceecCCc
Confidence 9986 454444332 346999999999999999999999996 999999999999999999999999999876432
Q ss_pred cccccccCCCCccccccCccccccccccccccCCCC-CCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKR-ASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
.. ......||+.|+|||.+.+.. ++.++||||+||++|||++|+.||.........+.........
T Consensus 155 ~~-------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~ 221 (292)
T 3o0g_A 155 VR-------------CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGT 221 (292)
T ss_dssp CS-------------CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCC
T ss_pred cc-------------cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCC
Confidence 11 112346899999999998765 7999999999999999999999864221111111111111111
Q ss_pred CC--CcHHHHHHHhhcCCC---CCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 904 HR--LDPIVEKAIAKYAPQ---HMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 904 ~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.. ..+.... .....+. ...............++.+++.+|++.||++|||++|++++
T Consensus 222 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 283 (292)
T 3o0g_A 222 PTEEQWPSMTK-LPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH 283 (292)
T ss_dssp CCTTTCTTGGG-STTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred CChhhhhhhcc-cccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 00 0000000 0000000 00000111122355778999999999999999999999875
No 123
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=356.43 Aligned_cols=250 Identities=26% Similarity=0.327 Sum_probs=202.0
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|.+.+.||+|+||.||+|... +++.||+|++.... .......+.+|+++++.++||||+++++++...+..++||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 56888999999999999999965 57889999986543 2234578899999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++|+|.+++.. ...+++..++.++.|++.||+|||+.+ |+||||||+|||++.++.+||+|||+|+....
T Consensus 95 e~~~gg~L~~~l~~----~~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 167 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQ----NVHFKEETVKLFICELVMALDYLQNQR---IIHRDMKPDNILLDEHGHVHITDFNIAAMLPR 167 (384)
T ss_dssp CCCTTEEHHHHHHT----TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred ecCCCCcHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEECCCCCEEEeccceeeeccC
Confidence 99999999999874 345899999999999999999999996 99999999999999999999999999987643
Q ss_pred CcccccccCCCCccccccCccccccccccccccCC---CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHh
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG---KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~ 900 (983)
.. ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... ......
T Consensus 168 ~~--------------~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~--~~~~~~--- 228 (384)
T 4fr4_A 168 ET--------------QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSS--TSSKEI--- 228 (384)
T ss_dssp TC--------------CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTT--SCHHHH---
T ss_pred CC--------------ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCC--ccHHHH---
Confidence 21 1223579999999999874 4589999999999999999999999864211 111111
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCC-HHHHHH
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPS-MLDVAH 960 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-~~evl~ 960 (983)
......... ..+ ...+.++.+++.+|++.||++||+ ++++.+
T Consensus 229 ---------~~~~~~~~~--~~p-------~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 229 ---------VHTFETTVV--TYP-------SAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp ---------HHHHHHCCC--CCC-------TTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred ---------HHHHhhccc--CCC-------CcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 111111111 111 123467899999999999999998 777765
No 124
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=2.6e-38 Score=342.27 Aligned_cols=255 Identities=24% Similarity=0.417 Sum_probs=207.5
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|...+.||+|+||.||+|... +++.||||+++........+.+.+|+++++.++||||+++++++...+..++|||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 356888999999999999999975 6889999999766555566889999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|+++++|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||.+......
T Consensus 86 ~~~~~~L~~~l~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 158 (276)
T 2yex_A 86 YCSGGELFDRIEP----DIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYN 158 (276)
T ss_dssp CCTTEEGGGGSBT----TTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred ecCCCcHHHHHhh----ccCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCChHHEEEccCCCEEEeeCCCccccCCC
Confidence 9999999999864 345899999999999999999999996 999999999999999999999999999866432
Q ss_pred cccccccCCCCccccccCccccccccccccccCCCCC-CccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRA-STHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
... .......||+.|+|||.+.+..+ +.++||||||+++|||++|+.||+...........+...
T Consensus 159 ~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~--- 224 (276)
T 2yex_A 159 NRE-----------RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK--- 224 (276)
T ss_dssp TEE-----------CCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTT---
T ss_pred cch-----------hcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhc---
Confidence 211 11223568999999999988765 788999999999999999999997532221111111110
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
... . ..+...+.++.+++.+|++.||++|||++|++++
T Consensus 225 -------------~~~--~-----~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~ 262 (276)
T 2yex_A 225 -------------KTY--L-----NPWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (276)
T ss_dssp -------------CTT--S-----TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred -------------ccc--c-----CchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence 000 0 0122345678899999999999999999999875
No 125
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=7.3e-39 Score=358.19 Aligned_cols=251 Identities=26% Similarity=0.364 Sum_probs=190.3
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|.+.+.||+|+||.||+|+.. +++.||||+++... ..+.+.+|++++++++||||+++++++...+..++|||
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV---DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch---hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 467888999999999999999976 57889999997543 24678899999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC---CCCEEEccccccccc
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE---DLTALVADFGIAKLV 821 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~---~~~~kl~Dfgla~~~ 821 (983)
|+++|+|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||+++. ++.+||+|||+++..
T Consensus 129 ~~~~~~L~~~l~~----~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~ 201 (349)
T 2w4o_A 129 LVTGGELFDRIVE----KGYYSERDAADAVKQILEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFGLSKIV 201 (349)
T ss_dssp CCCSCBHHHHHTT----CSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESSSSTTCCEEECCCC-----
T ss_pred eCCCCCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCcccEEEecCCCCCCEEEccCcccccc
Confidence 9999999998864 345899999999999999999999996 999999999999975 889999999999865
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... .
T Consensus 202 ~~~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~----~------ 257 (349)
T 2w4o_A 202 EHQV--------------LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD----Q------ 257 (349)
T ss_dssp -------------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH----H------
T ss_pred Cccc--------------ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc----H------
Confidence 4221 112356999999999999999999999999999999999999998532111 0
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
............. ....+.+.+.++.+++.+|++.||++|||+.|++++
T Consensus 258 ------~~~~~i~~~~~~~-----~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 306 (349)
T 2w4o_A 258 ------FMFRRILNCEYYF-----ISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQH 306 (349)
T ss_dssp ------HHHHHHHTTCCCC-----CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ------HHHHHHHhCCCcc-----CCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0111111111110 011223456789999999999999999999999985
No 126
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.3e-38 Score=353.02 Aligned_cols=265 Identities=27% Similarity=0.422 Sum_probs=196.1
Q ss_pred HhCCCCCCCccccCCcEeEEEEEECCC-c---EEEEEEeeccc-CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCce
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQDN-T---RIAVKVLDLTT-TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFK 739 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~~~-~---~vAvK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 739 (983)
..++|...+.||+|+||.||+|.+... + .||||+++... .....+++.+|++++++++||||+++++++......
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 346799999999999999999996533 2 79999986543 233467899999999999999999999999877655
Q ss_pred ------eEEEecccCcccccccccccC--cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEE
Q 042568 740 ------ALVLPLMSNGSLENHLYPSHG--LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTAL 811 (983)
Q Consensus 740 ------~lv~e~~~~gsL~~~l~~~~~--~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~k 811 (983)
++||||+++|+|.+++..... ....+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+|
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~Dikp~NIli~~~~~~k 177 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRN---FIHRDLAARNCMLAEDMTVC 177 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEE
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCC---cccCCCCcceEEEcCCCCEE
Confidence 999999999999999864332 1235899999999999999999999996 99999999999999999999
Q ss_pred EccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCC
Q 042568 812 VADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHD 890 (983)
Q Consensus 812 l~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~ 890 (983)
|+|||+++........ .......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.....
T Consensus 178 l~Dfg~a~~~~~~~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~- 245 (323)
T 3qup_A 178 VADFGLSRKIYSGDYY-----------RQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIEN- 245 (323)
T ss_dssp ECCCCC----------------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG-
T ss_pred Eeeccccccccccccc-----------cccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccCh-
Confidence 9999999876432211 11122357889999999999999999999999999999999 8999864211
Q ss_pred CCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 891 GSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 891 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
.+............ .+ ..++.++.+++.+|++.||++|||+.|+++.|+++.+.
T Consensus 246 ----------------~~~~~~~~~~~~~~-~~-------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 246 ----------------AEIYNYLIGGNRLK-QP-------PECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH 299 (323)
T ss_dssp ----------------GGHHHHHHTTCCCC-CC-------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ----------------HHHHHHHhcCCCCC-CC-------CccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 11111111111111 11 12446789999999999999999999999999988654
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-37 Score=359.18 Aligned_cols=399 Identities=20% Similarity=0.221 Sum_probs=302.6
Q ss_pred CeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEec
Q 042568 77 NKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDL 156 (983)
Q Consensus 77 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~L 156 (983)
.+++.|+++++.+.+. | .++.+++|++|+|++|.+++ +| ++.+++|++|+|++|.|++. | ++++++|++|+|
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 3589999999999974 4 79999999999999999996 44 99999999999999999964 4 999999999999
Q ss_pred cCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccc
Q 042568 157 GNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNM 236 (983)
Q Consensus 157 s~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 236 (983)
++|++++ +| + ..+++|++|++++|.+++ ++ +..+++|++|++++|+..+.+ .++.+++|++|++++|+
T Consensus 114 ~~N~l~~-l~--~---~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 114 DTNKLTK-LD--V---SQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CSSCCSC-CC--C---TTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CCCcCCe-ec--C---CCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 9999985 55 3 488999999999999997 44 568999999999999766666 48899999999999999
Q ss_pred cccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccC
Q 042568 237 FSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDC 316 (983)
Q Consensus 237 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~ 316 (983)
+++ +| +..+++|++|++++|++... .+..+++|++|++++|++++ +| +..+ ++|+.|++++
T Consensus 182 l~~-l~---l~~l~~L~~L~l~~N~l~~~-----------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l-~~L~~L~l~~ 242 (457)
T 3bz5_A 182 ITE-LD---VSQNKLLNRLNCDTNNITKL-----------DLNQNIQLTFLDCSSNKLTE-ID--VTPL-TQLTYFDCSV 242 (457)
T ss_dssp CCC-CC---CTTCTTCCEEECCSSCCSCC-----------CCTTCTTCSEEECCSSCCSC-CC--CTTC-TTCSEEECCS
T ss_pred cce-ec---cccCCCCCEEECcCCcCCee-----------ccccCCCCCEEECcCCcccc-cC--cccc-CCCCEEEeeC
Confidence 985 66 67899999999999998753 26778999999999999997 55 5565 5799999999
Q ss_pred ccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCc
Q 042568 317 NLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIP 396 (983)
Q Consensus 317 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 396 (983)
|.+++.. ++.+++|+.|++++|+ |+.|++++|.+.+.+| ++.+++|+.|+|++|++.+.+|
T Consensus 243 N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 243 NPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp SCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 9998753 4567788888887663 5567788888777776 5678889999999998877777
Q ss_pred ccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCcccccccc
Q 042568 397 DSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMD 476 (983)
Q Consensus 397 ~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~ 476 (983)
. ...+|+.|++++| ++|+.|++++|++++. + +..+++|+. |++++|++++ ++
T Consensus 304 ~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~-L~l~~N~l~~--------l~ 355 (457)
T 3bz5_A 304 C---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKS-LSCVNAHIQD--------FS 355 (457)
T ss_dssp C---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSE-EECCSSCCCB--------CT
T ss_pred c---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcE-EECCCCCCCC--------cc
Confidence 4 3345555555444 5678888888888763 2 777777875 8888888775 24
Q ss_pred ccccccccccccccCCCcccccccccceEEeCCCcccccccccccC-CCCccEEecCCccccCCcCc--cccCCC-----
Q 042568 477 MVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQ-LPYLKQFDVSSNRLFGEIPQ--SFQASP----- 548 (983)
Q Consensus 477 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~ls~N~l~~~~p~--~~~~l~----- 548 (983)
.|..|++++|+++|. +.+..|+.+++++|+++|.+|..+.. ..++....-+.+........ .+.+++
T Consensus 356 ~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~ 430 (457)
T 3bz5_A 356 SVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPA 430 (457)
T ss_dssp TGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESSSEEEETTTTEEEESSCCTTSCE
T ss_pred ccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCCCccccCCCCeeEEEeccCCCce
Confidence 566777888888765 35566777888888888877765433 23333333333322211110 111111
Q ss_pred CcceEeccCCccccccCC
Q 042568 549 TLKQLNFSFNKFSGNISN 566 (983)
Q Consensus 549 ~L~~l~l~~N~l~~~~~~ 566 (983)
-+.....++|.++|.++.
T Consensus 431 ~~y~~~~~~~~fsG~i~~ 448 (457)
T 3bz5_A 431 VTYTFTSENGAIVGTVTT 448 (457)
T ss_dssp ECEEEECTTSSEEEEEEE
T ss_pred EEEEEecCCcEEeeEecc
Confidence 123333457888888764
No 128
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=2.1e-38 Score=353.04 Aligned_cols=265 Identities=22% Similarity=0.349 Sum_probs=212.4
Q ss_pred hCCCCCCCccccCCcEeEEEEEECC-C-----cEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCc
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQD-N-----TRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPDF 738 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~-~-----~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 738 (983)
.++|...+.||+|+||.||+|.... + ..||||.+......+..+.+.+|+++++++ +||||+++++++...+.
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 124 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGP 124 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCc
Confidence 4678889999999999999999652 2 479999997665555677899999999999 89999999999999999
Q ss_pred eeEEEecccCcccccccccccC----------cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC
Q 042568 739 KALVLPLMSNGSLENHLYPSHG----------LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL 808 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~----------~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~ 808 (983)
.++||||+++|+|.+++..... ....+++..++.++.|+++||+|||+.+ |+||||||+||+++.++
T Consensus 125 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~ 201 (333)
T 2i1m_A 125 VLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGH 201 (333)
T ss_dssp CEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGCEEEGGG
T ss_pred eEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCcccceEEECCCC
Confidence 9999999999999999865321 1345899999999999999999999996 99999999999999999
Q ss_pred CEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcc
Q 042568 809 TALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVL 887 (983)
Q Consensus 809 ~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~ 887 (983)
.+||+|||+++........ .......||+.|+|||.+.+..++.++||||||+++|||++ |..||...
T Consensus 202 ~~kl~Dfg~~~~~~~~~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~ 270 (333)
T 2i1m_A 202 VAKIGDFGLARDIMNDSNY-----------IVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI 270 (333)
T ss_dssp EEEBCCCGGGCCGGGCTTS-----------EECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred eEEECccccccccccccce-----------eecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCccc
Confidence 9999999999866432211 11223468899999999998899999999999999999999 99998642
Q ss_pred cCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHh
Q 042568 888 FHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQ 967 (983)
Q Consensus 888 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 967 (983)
... ......+........+ ..++.++.+++.+|++.||++|||+.|++++|+++.+
T Consensus 271 ~~~-----------------~~~~~~~~~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~ 326 (333)
T 2i1m_A 271 LVN-----------------SKFYKLVKDGYQMAQP-------AFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQ 326 (333)
T ss_dssp CSS-----------------HHHHHHHHHTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred chh-----------------HHHHHHHhcCCCCCCC-------CCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHH
Confidence 111 1111111111111111 1134678899999999999999999999999998865
Q ss_pred h
Q 042568 968 Y 968 (983)
Q Consensus 968 ~ 968 (983)
.
T Consensus 327 ~ 327 (333)
T 2i1m_A 327 E 327 (333)
T ss_dssp H
T ss_pred h
Confidence 4
No 129
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=2.7e-38 Score=359.91 Aligned_cols=284 Identities=18% Similarity=0.253 Sum_probs=207.6
Q ss_pred hCCCCCCCccccC--CcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeE
Q 042568 666 TGGFCPSSLIGSG--RFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 666 ~~~f~~~~~iG~G--~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 741 (983)
.++|.+.++||+| +||.||+|+.. +++.||||+++.... .+..+.+.+|++++++++||||+++++++...+..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 4678899999999 99999999976 689999999976543 2345778899999999999999999999999999999
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
||||+++|+|.+++.... ...+++..++.++.|+++||+|||+.+ |+||||||+|||++.++.+||+|||.+...
T Consensus 104 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~kl~dfg~~~~~ 178 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHF--MDGMNELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNLSM 178 (389)
T ss_dssp EEECCTTCBHHHHHHHTC--TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred EEEccCCCCHHHHHhhhc--ccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEcccccceee
Confidence 999999999999987542 345899999999999999999999996 999999999999999999999999998765
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCC--CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG--KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
......... .........||+.|+|||.+.+ ..++.++||||+||++|||++|+.||....... .+...+.
T Consensus 179 ~~~~~~~~~------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~~~~ 251 (389)
T 3gni_B 179 ISHGQRQRV------VHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQ-MLLEKLN 251 (389)
T ss_dssp EETTEECSC------BCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTT-HHHHC--
T ss_pred ccccccccc------cccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHhc
Confidence 432211110 0112233479999999999987 678999999999999999999999996532211 1111111
Q ss_pred hhCCCCCcHH-------------------HHHHHhhcC--CCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHH
Q 042568 900 RHYPHRLDPI-------------------VEKAIAKYA--PQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDV 958 (983)
Q Consensus 900 ~~~~~~~~~~-------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ev 958 (983)
...+...... ......... ...........+.....++.+++.+|++.||++|||++|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~el 331 (389)
T 3gni_B 252 GTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTL 331 (389)
T ss_dssp ------------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHH
T ss_pred CCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHH
Confidence 1111000000 000000000 0000000011123356779999999999999999999999
Q ss_pred HHH
Q 042568 959 AHE 961 (983)
Q Consensus 959 l~~ 961 (983)
+++
T Consensus 332 l~h 334 (389)
T 3gni_B 332 LNH 334 (389)
T ss_dssp TTS
T ss_pred hcC
Confidence 976
No 130
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=2e-38 Score=353.92 Aligned_cols=247 Identities=25% Similarity=0.304 Sum_probs=204.7
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|...+.||+|+||.||+|+.. +++.||||+++... .....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 57888999999999999999975 68999999996543 2234577889999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++|+|.+++... ..+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 121 e~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~ 193 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRI----GRFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 193 (350)
T ss_dssp ECCTTCBHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred cCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCccceEEECCCCCEEEcccccceeccC
Confidence 999999999998753 45899999999999999999999996 99999999999999999999999999986542
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
. .....||+.|+|||++.+..++.++||||+||++|||++|+.||... ..
T Consensus 194 ~----------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~--------- 243 (350)
T 1rdq_E 194 R----------------TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD-----QP--------- 243 (350)
T ss_dssp C----------------BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SH---------
T ss_pred C----------------cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC-----CH---------
Confidence 1 12357999999999999999999999999999999999999998632 11
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPS-----MLDVAHEM 962 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-----~~evl~~L 962 (983)
.+..+....... ..+ ...+.++.+++.+|++.||++||+ ++|+++|-
T Consensus 244 ---~~~~~~i~~~~~--~~p-------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~ 295 (350)
T 1rdq_E 244 ---IQIYEKIVSGKV--RFP-------SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHK 295 (350)
T ss_dssp ---HHHHHHHHHCCC--CCC-------TTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSG
T ss_pred ---HHHHHHHHcCCC--CCC-------CCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCc
Confidence 111122111111 111 123467899999999999999998 89988753
No 131
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=2.4e-38 Score=344.70 Aligned_cols=255 Identities=27% Similarity=0.426 Sum_probs=201.1
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcc------hhHHHHHHHHHHHhcCCCCccceeeEEecCCce
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGE------ITGSFKRECQILKRIRHRNLIRIITICSKPDFK 739 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 739 (983)
++|...+.||+|+||.||+|.+. +++.||||++....... ..+++.+|++++++++||||+++++++....
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 57888999999999999999974 78899999986543321 1267899999999999999999999996654
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCC-----EEEcc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLT-----ALVAD 814 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~-----~kl~D 814 (983)
++||||+++|+|.+++... ...+++..++.++.|+++||+|||+++. +|+||||||+||+++.++. +||+|
T Consensus 97 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~~l~~~l~~lH~~~~-~ivH~dikp~Nil~~~~~~~~~~~~kl~D 172 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLLDK---AHPIKWSVKLRLMLDIALGIEYMQNQNP-PIVHRDLRSPNIFLQSLDENAPVCAKVAD 172 (287)
T ss_dssp EEEEECCTTCBHHHHHHCT---TSCCCHHHHHHHHHHHHHHHHHHHTSSS-CCBCSCCSGGGEEESCCCTTCSCCEEECC
T ss_pred eEEEEecCCCCHHHHHhcc---cCCccHHHHHHHHHHHHHHHHHHHhCCC-CeecCCCCcceEEEeccCCCCceeEEeCC
Confidence 7999999999998888643 3469999999999999999999999842 3999999999999988776 99999
Q ss_pred ccccccccCCcccccccCCCCccccccCccccccccccccccC--CCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCC
Q 042568 815 FGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM--GKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGS 892 (983)
Q Consensus 815 fgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~ 892 (983)
||+++..... .....||+.|+|||.+. ...++.++||||+|+++|||++|+.||........
T Consensus 173 fg~~~~~~~~----------------~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~ 236 (287)
T 4f0f_A 173 FGLSQQSVHS----------------VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKI 236 (287)
T ss_dssp CTTCBCCSSC----------------EECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHH
T ss_pred CCcccccccc----------------ccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHH
Confidence 9999744321 12246999999999984 45678999999999999999999999864321111
Q ss_pred chHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 042568 893 SLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRL 965 (983)
Q Consensus 893 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 965 (983)
.. .............+ ..++.++.+++.+|++.||++|||++|+++.|+++
T Consensus 237 ~~---------------~~~~~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 237 KF---------------INMIREEGLRPTIP-------EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp HH---------------HHHHHHSCCCCCCC-------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred HH---------------HHHHhccCCCCCCC-------cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 00 11111111111111 23457889999999999999999999999999864
No 132
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=2.9e-38 Score=340.90 Aligned_cols=255 Identities=25% Similarity=0.369 Sum_probs=205.4
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecC--CceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKP--DFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ 743 (983)
++|...+.||+|+||.||+|+++ ++.||||+++.... ....+.+.+|++++++++||||+++++++... ...++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 46888999999999999999986 88999999976542 33457799999999999999999999999877 7789999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++|+|.+++.... ...+++..++.++.|+++||+|||+.+. +|+||||||+||+++.++.++|+|||.+.....
T Consensus 89 e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~~-~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~ 165 (271)
T 3kmu_A 89 HWMPYGSLYNVLHEGT--NFVVDQSQAVKFALDMARGMAFLHTLEP-LIPRHALNSRSVMIDEDMTARISMADVKFSFQS 165 (271)
T ss_dssp ECCTTCBHHHHHHSCS--SCCCCHHHHHHHHHHHHHHHHHHTTSSS-CCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSC
T ss_pred cccCCCcHHHHHhhcc--cCCCCHHHHHHHHHHHHHHHHHHhcCCC-ceecCCCccceEEEcCCcceeEEeccceeeecc
Confidence 9999999999997543 3368999999999999999999999742 399999999999999999999999988754221
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCc---cchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHh
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRAST---HGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~ 900 (983)
....||+.|+|||.+.+..++. ++||||||+++|||++|+.||.....
T Consensus 166 ------------------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----------- 216 (271)
T 3kmu_A 166 ------------------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSN----------- 216 (271)
T ss_dssp ------------------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCH-----------
T ss_pred ------------------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccCh-----------
Confidence 1236899999999998765544 79999999999999999999863211
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHh
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQ 967 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 967 (983)
................+ ..++.++.+++.+|++.||++|||++|+++.|+++.+
T Consensus 217 ------~~~~~~~~~~~~~~~~~-------~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 217 ------MEIGMKVALEGLRPTIP-------PGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp ------HHHHHHHHHSCCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHhcCCCCCCC-------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 11111111111111111 2245678999999999999999999999999998864
No 133
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=2.3e-38 Score=344.31 Aligned_cols=254 Identities=24% Similarity=0.344 Sum_probs=201.0
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
++|...+.||+|+||.||+|... ++..||+|++.........+.+.+|++++++++||||+++++++......++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 101 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET 101 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence 46888999999999999999965 68899999997766555678899999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe---CCCCCEEEcccccccccc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL---DEDLTALVADFGIAKLVK 822 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl---~~~~~~kl~Dfgla~~~~ 822 (983)
+++|+|.+++.........+++..++.++.|+++||+|||+.+ |+||||||+||++ +.++.+||+|||+++...
T Consensus 102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~ 178 (285)
T 3is5_A 102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQH---VVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK 178 (285)
T ss_dssp CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence 9999999988654333467999999999999999999999996 9999999999999 456889999999998654
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.... .....||+.|+|||.+. ..++.++||||+|+++|||++|+.||.... ...
T Consensus 179 ~~~~--------------~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~-----~~~------ 232 (285)
T 3is5_A 179 SDEH--------------STNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTS-----LEE------ 232 (285)
T ss_dssp ----------------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHH------
T ss_pred Cccc--------------CcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCC-----HHH------
Confidence 3211 12346899999999876 468899999999999999999999986321 111
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
............ +.. ......++.+++.+|++.||++|||+.|++++
T Consensus 233 ------~~~~~~~~~~~~--~~~----~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 279 (285)
T 3is5_A 233 ------VQQKATYKEPNY--AVE----CRPLTPQAVDLLKQMLTKDPERRPSAAQVLHH 279 (285)
T ss_dssp ------HHHHHHHCCCCC--CC------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred ------HHhhhccCCccc--ccc----cCcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 111111111100 000 01134678899999999999999999999864
No 134
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=1.1e-38 Score=354.76 Aligned_cols=252 Identities=25% Similarity=0.372 Sum_probs=203.7
Q ss_pred HHhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCce
Q 042568 664 EATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRI-RHRNLIRIITICSKPDFK 739 (983)
Q Consensus 664 ~~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 739 (983)
...++|...+.||+|+||.||+|+.. +++.||||+++... .......+..|.++++.+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 34578999999999999999999975 68889999997542 123456788899999987 999999999999999999
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
++||||+++|+|.+++... ..+++..+..++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+|+
T Consensus 94 ~lv~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~ 166 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSC----HKFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCK 166 (345)
T ss_dssp EEEEECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred EEEEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCChhhEEECCCCCEEEeEChhhh
Confidence 9999999999999998753 45899999999999999999999996 9999999999999999999999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
...... ......+||+.|+|||.+.+..++.++||||+||++|||++|+.||... ...
T Consensus 167 ~~~~~~-------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~---- 224 (345)
T 1xjd_A 167 ENMLGD-------------AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ-----DEE---- 224 (345)
T ss_dssp CCCCTT-------------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHH----
T ss_pred hcccCC-------------CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC-----CHH----
Confidence 543211 1123357999999999999999999999999999999999999998632 111
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHH-HHHHH
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSML-DVAHE 961 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~-evl~~ 961 (983)
+..+....... ..+ .....++.+++.+|++.||++||++. |+++|
T Consensus 225 --------~~~~~i~~~~~--~~p-------~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~h 270 (345)
T 1xjd_A 225 --------ELFHSIRMDNP--FYP-------RWLEKEAKDLLVKLFVREPEKRLGVRGDIRQH 270 (345)
T ss_dssp --------HHHHHHHHCCC--CCC-------TTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGS
T ss_pred --------HHHHHHHhCCC--CCC-------cccCHHHHHHHHHHhcCCHhHcCCChHHHHcC
Confidence 11111111111 111 11346789999999999999999997 77643
No 135
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.9e-38 Score=348.88 Aligned_cols=264 Identities=28% Similarity=0.441 Sum_probs=204.8
Q ss_pred CCCCCCCccccCCcEeEEEEEECC-----CcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQD-----NTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~-----~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 741 (983)
++|...+.||+|+||.||+|.... +..||||.++..........+.+|++++++++||||+++++++...+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 456667899999999999998642 235999999766555556789999999999999999999999999999999
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
||||+++|+|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++..
T Consensus 124 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~ 197 (333)
T 1mqb_A 124 ITEYMENGALDKFLREK---DGEFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVL 197 (333)
T ss_dssp EEECCTTEEHHHHHHHT---TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred EEeCCCCCcHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChheEEECCCCcEEECCCCcchhh
Confidence 99999999999998753 346899999999999999999999996 999999999999999999999999999876
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~ 900 (983)
....... .......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.... ..
T Consensus 198 ~~~~~~~----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~-----~~----- 257 (333)
T 1mqb_A 198 EDDPEAT----------YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS-----NH----- 257 (333)
T ss_dssp -----------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-----HH-----
T ss_pred ccccccc----------cccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCC-----HH-----
Confidence 5322110 11112346889999999999999999999999999999999 999985321 01
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCC
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSS 971 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~ 971 (983)
+..+. +........+ ..++.++.+++.+||+.||++||++.|++++|+++.+....
T Consensus 258 -------~~~~~-~~~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~ 313 (333)
T 1mqb_A 258 -------EVMKA-INDGFRLPTP-------MDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDS 313 (333)
T ss_dssp -------HHHHH-HHTTCCCCCC-------TTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGG
T ss_pred -------HHHHH-HHCCCcCCCc-------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchh
Confidence 11111 1111110011 12456789999999999999999999999999988765443
No 136
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.4e-38 Score=354.48 Aligned_cols=267 Identities=19% Similarity=0.266 Sum_probs=204.8
Q ss_pred HHHHHhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc----CcchhHHHHHHHHHHHhcCCCCccceeeEEec
Q 042568 661 QLIEATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT----TGEITGSFKRECQILKRIRHRNLIRIITICSK 735 (983)
Q Consensus 661 ~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 735 (983)
++....++|...+.||+|+||.||+|... +++.||+|++.... .....+.+.+|++++++++||||+++++++.+
T Consensus 20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~ 99 (345)
T 3hko_A 20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED 99 (345)
T ss_dssp CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence 34556678999999999999999999964 67889999986542 23456789999999999999999999999999
Q ss_pred CCceeEEEecccCcccccccccccCc------------------------------------CCCCCHHHHHHHHHHHHH
Q 042568 736 PDFKALVLPLMSNGSLENHLYPSHGL------------------------------------SHGLDLIQLVKICSDVAE 779 (983)
Q Consensus 736 ~~~~~lv~e~~~~gsL~~~l~~~~~~------------------------------------~~~l~~~~~~~i~~~ia~ 779 (983)
.+..++||||+++|+|.+++...... ...+++..++.++.|+++
T Consensus 100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~ 179 (345)
T 3hko_A 100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS 179 (345)
T ss_dssp SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999988521100 112467788899999999
Q ss_pred HHHHHhccCCCCeEeecCCCCCeEeCCCC--CEEEccccccccccCCcccccccCCCCccccccCccccccccccccccC
Q 042568 780 GVAYLHHHSPIKVVHCDLKPSNILLDEDL--TALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM 857 (983)
Q Consensus 780 aL~~LH~~~~~~ivH~Dikp~NiLl~~~~--~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~ 857 (983)
||+|||+.+ |+||||||+||+++.++ .+||+|||+++.+....... ........||+.|+|||.+.
T Consensus 180 ~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~---------~~~~~~~~gt~~y~aPE~~~ 247 (345)
T 3hko_A 180 ALHYLHNQG---ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGE---------YYGMTTKAGTPYFVAPEVLN 247 (345)
T ss_dssp HHHHHHHTT---EECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC-----------------CCCGGGCCHHHHT
T ss_pred HHHHHHHCC---ccccCCChhhEEEecCCCceEEEeeccccccccccCccc---------cccccccCCCccccCchhhc
Confidence 999999996 99999999999998776 89999999998764322110 01122356999999999987
Q ss_pred C--CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHH
Q 042568 858 G--KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVL 935 (983)
Q Consensus 858 ~--~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (983)
+ ..++.++||||||+++|||++|+.||..... .+............. ...+.....
T Consensus 248 ~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~~ 305 (345)
T 3hko_A 248 TTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVND-----------------ADTISQVLNKKLCFE-----NPNYNVLSP 305 (345)
T ss_dssp CSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----------------HHHHHHHHHCCCCTT-----SGGGGGSCH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCh-----------------HHHHHHHHhcccccC-----CcccccCCH
Confidence 5 6789999999999999999999999863211 111112221111111 111233567
Q ss_pred HHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 936 ELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 936 ~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
++.+++.+|++.||++||++.|++++
T Consensus 306 ~~~~li~~~l~~~p~~Rps~~~~l~h 331 (345)
T 3hko_A 306 LARDLLSNLLNRNVDERFDAMRALQH 331 (345)
T ss_dssp HHHHHHHHHSCSCTTTSCCHHHHHHS
T ss_pred HHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 89999999999999999999999985
No 137
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=2.2e-38 Score=349.03 Aligned_cols=269 Identities=21% Similarity=0.308 Sum_probs=203.5
Q ss_pred CCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|.+.+.||+|+||.||+|.. .+++.||||++.... ......++.+|++++++++||||+++++++...+..++||
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 111 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL 111 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence 5688899999999999999996 478999999986532 2334678899999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++++|.+++.........+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++....
T Consensus 112 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~ 188 (310)
T 2wqm_A 112 ELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFSS 188 (310)
T ss_dssp ECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCC--------
T ss_pred ecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCcHHHEEEcCCCCEEEEeccceeeecC
Confidence 999999999998754333556899999999999999999999996 99999999999999999999999999986543
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
... ......||+.|+|||.+.+..++.++||||||+++|+|++|+.||.... .......
T Consensus 189 ~~~-------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~---~~~~~~~----- 247 (310)
T 2wqm_A 189 KTT-------------AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK---MNLYSLC----- 247 (310)
T ss_dssp -----------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC------CCHHHHH-----
T ss_pred CCc-------------cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc---hhHHHHH-----
Confidence 211 1122468999999999999999999999999999999999999985321 1111111
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCCCc
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSSPS 973 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~~ 973 (983)
.. +..... +... ....+.++.+++.+|++.||++|||+.++++.|+++.....+|.
T Consensus 248 -------~~-~~~~~~---~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~~ 303 (310)
T 2wqm_A 248 -------KK-IEQCDY---PPLP---SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASSL 303 (310)
T ss_dssp -------HH-HHTTCS---CCCC---TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC---
T ss_pred -------HH-hhcccC---CCCc---ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhhh
Confidence 11 111110 0000 12245678999999999999999999999999999987765543
No 138
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=4.3e-38 Score=350.75 Aligned_cols=258 Identities=21% Similarity=0.309 Sum_probs=203.4
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 742 (983)
++|...+.||+|+||.||+|+.. +++.||||+++.... .+..+.+.+|.++++++ +||||+++++++...+..++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 46888999999999999999975 578899999976532 23456788999999998 899999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|||+++|+|.+++... ..+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+++...
T Consensus 89 ~e~~~gg~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~ 161 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQ----RKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL 161 (345)
T ss_dssp ECCCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCGGGCBCSC
T ss_pred EeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEEecccccccc
Confidence 9999999999988743 45899999999999999999999996 9999999999999999999999999998543
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..........
T Consensus 162 ~~~-------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~-------- 220 (345)
T 3a8x_A 162 RPG-------------DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPD-------- 220 (345)
T ss_dssp CTT-------------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------------
T ss_pred CCC-------------CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccc--------
Confidence 211 11233579999999999999999999999999999999999999996432111000
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCH------HHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSM------LDVAHE 961 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~------~evl~~ 961 (983)
......+...+.... ...| ...+.++.+++.+|++.||++||++ +|+++|
T Consensus 221 -~~~~~~~~~~i~~~~-~~~p-------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~h 276 (345)
T 3a8x_A 221 -QNTEDYLFQVILEKQ-IRIP-------RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH 276 (345)
T ss_dssp ---CHHHHHHHHHHCC-CCCC-------TTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTS
T ss_pred -cccHHHHHHHHHcCC-CCCC-------CCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcC
Confidence 000111111111111 1111 1244678999999999999999995 677764
No 139
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=3.6e-38 Score=349.50 Aligned_cols=249 Identities=22% Similarity=0.300 Sum_probs=194.1
Q ss_pred CCCCCCCccccCCcEeEEEEEE----CCCcEEEEEEeeccc---CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCce
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL----QDNTRIAVKVLDLTT---TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFK 739 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~----~~~~~vAvK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 739 (983)
++|...+.||+|+||.||+|+. .+++.||||+++... .......+.+|++++++++||||+++++++...+..
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 96 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL 96 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence 5788899999999999999997 478899999997543 122356788999999999999999999999999999
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
++||||+++|+|.+++... ..+++..+..++.|++.||+|||+++ |+||||||+||+++.++.+||+|||+++
T Consensus 97 ~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~Dfg~~~ 169 (327)
T 3a62_A 97 YLILEYLSGGELFMQLERE----GIFMEDTACFYLAEISMALGHLHQKG---IIYRDLKPENIMLNHQGHVKLTDFGLCK 169 (327)
T ss_dssp EEEEECCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTSCEEECCCSCC-
T ss_pred EEEEeCCCCCcHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHhCC---EEcccCCHHHeEECCCCcEEEEeCCccc
Confidence 9999999999999988743 45889999999999999999999996 9999999999999999999999999997
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
...... .......||+.|+|||.+.+..++.++||||||+++|||++|+.||.... ..
T Consensus 170 ~~~~~~-------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-----~~---- 227 (327)
T 3a62_A 170 ESIHDG-------------TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGEN-----RK---- 227 (327)
T ss_dssp ----------------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS-----HH----
T ss_pred ccccCC-------------ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCC-----HH----
Confidence 543221 11223579999999999999999999999999999999999999986321 11
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHHH
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRP-----SMLDVAHE 961 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~evl~~ 961 (983)
...+....... ..+ .....++.+++.+|++.||++|| ++.|+++|
T Consensus 228 --------~~~~~i~~~~~--~~p-------~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h 277 (327)
T 3a62_A 228 --------KTIDKILKCKL--NLP-------PYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAH 277 (327)
T ss_dssp --------HHHHHHHHTCC--CCC-------TTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred --------HHHHHHHhCCC--CCC-------CCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence 11122111111 111 12346789999999999999999 78888875
No 140
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=4.5e-38 Score=355.33 Aligned_cols=253 Identities=21% Similarity=0.251 Sum_probs=205.3
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|.+.+.||+|+||.||+|... +++.||+|++..... .....+.+|++++++++||||+++++++......++|||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~-~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E 128 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP-LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE 128 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH-HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccch-hhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEE
Confidence 357889999999999999999975 688899999865432 235678999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC--CCCEEEcccccccccc
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE--DLTALVADFGIAKLVK 822 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~--~~~~kl~Dfgla~~~~ 822 (983)
|+++|+|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+|||++. ++.+||+|||+++...
T Consensus 129 ~~~gg~L~~~l~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~ 202 (387)
T 1kob_A 129 FLSGGELFDRIAAE---DYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLATKLN 202 (387)
T ss_dssp CCCCCBHHHHTTCT---TCCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTTCEECC
T ss_pred cCCCCcHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccchHHeEEecCCCCceEEEecccceecC
Confidence 99999999988643 346899999999999999999999996 999999999999974 5789999999998764
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.... .....||+.|+|||++.+..++.++||||+||++|||++|+.||.... ..+
T Consensus 203 ~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~-----~~~------ 257 (387)
T 1kob_A 203 PDEI--------------VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED-----DLE------ 257 (387)
T ss_dssp TTSC--------------EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS-----HHH------
T ss_pred CCcc--------------eeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCC-----HHH------
Confidence 3211 122469999999999999999999999999999999999999986321 111
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
............ ....+...+.++.+++.+|++.||++|||+.|++++
T Consensus 258 ------~~~~i~~~~~~~-----~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 258 ------TLQNVKRCDWEF-----DEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH 305 (387)
T ss_dssp ------HHHHHHHCCCCC-----CSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred ------HHHHHHhCCCCC-----CccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence 111111111100 011223456789999999999999999999999986
No 141
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=6.7e-38 Score=350.45 Aligned_cols=276 Identities=24% Similarity=0.339 Sum_probs=212.9
Q ss_pred CHHHHHHHhCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHh--cCCCCccceeeEEec
Q 042568 658 SYKQLIEATGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKR--IRHRNLIRIITICSK 735 (983)
Q Consensus 658 ~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~ 735 (983)
....-....++|...+.||+|+||.||+|+.. ++.||||++... ....+.+|+++++. ++||||+++++++..
T Consensus 33 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~----~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~ 107 (342)
T 1b6c_B 33 PLLVQRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR----EERSWFREAEIYQTVMLRHENILGFIAADNK 107 (342)
T ss_dssp CHHHHHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECGG----GHHHHHHHHHHHHHSCCCCTTBCCEEEEEEC
T ss_pred ceeecccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCch----hHHHHHHHHHHHHHhhcCCCcEEEEEeeecc
Confidence 33333445678999999999999999999985 899999998533 34678889999988 789999999999987
Q ss_pred CC----ceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHh--------ccCCCCeEeecCCCCCeE
Q 042568 736 PD----FKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLH--------HHSPIKVVHCDLKPSNIL 803 (983)
Q Consensus 736 ~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH--------~~~~~~ivH~Dikp~NiL 803 (983)
.. ..++||||+++|+|.+++.. ..+++..++.++.|+++||+||| +.+ |+||||||+||+
T Consensus 108 ~~~~~~~~~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~NIl 179 (342)
T 1b6c_B 108 DNGTWTQLWLVSDYHEHGSLFDYLNR-----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA---IAHRDLKSKNIL 179 (342)
T ss_dssp CCSSCCCEEEEECCCTTCBHHHHHHH-----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE---EECSCCSGGGEE
T ss_pred cCCccceeEEEEeecCCCcHHHHHhc-----cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCC---eeeCCCCHHHEE
Confidence 76 78999999999999999963 35899999999999999999999 664 999999999999
Q ss_pred eCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCC------CCCccchhHHHHHHHHHH
Q 042568 804 LDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK------RASTHGDVYSFGVLLLEI 877 (983)
Q Consensus 804 l~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~k~Dv~SlG~il~el 877 (983)
++.++.+||+|||+++......... ........||+.|+|||.+.+. .++.++||||||+++|||
T Consensus 180 l~~~~~~kL~Dfg~~~~~~~~~~~~---------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el 250 (342)
T 1b6c_B 180 VKKNGTCCIADLGLAVRHDSATDTI---------DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEI 250 (342)
T ss_dssp ECTTSCEEECCCTTCEEEETTTTEE---------EECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCEEEEECCCceecccccccc---------ccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHH
Confidence 9999999999999998765432211 0122335799999999998875 234789999999999999
Q ss_pred HhC----------CCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCC
Q 042568 878 VTG----------RRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQY 947 (983)
Q Consensus 878 ltg----------~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~ 947 (983)
++| +.||............+.... .........+... ...+++..+.+++.+||+.
T Consensus 251 ~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~--~~~~~~~~l~~li~~cl~~ 316 (342)
T 1b6c_B 251 ARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVV------------CEQKLRPNIPNRW--QSCEALRVMAKIMRECWYA 316 (342)
T ss_dssp HTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHH------------TTSCCCCCCCGGG--GTSHHHHHHHHHHHHHCCS
T ss_pred HhccCcCCcccccccCccccCcCcccHHHHHHHH------------HHHHhCCCCcccc--cchhHHHHHHHHHHHHhcc
Confidence 999 667654332222222222111 1111111111100 1135778899999999999
Q ss_pred CCCCCCCHHHHHHHHHHhHhhc
Q 042568 948 NPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 948 dP~~RPs~~evl~~L~~~~~~~ 969 (983)
||++|||++|++++|+++.+..
T Consensus 317 dp~~Rps~~~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 317 NGAARLTALRIKKTLSQLSQQE 338 (342)
T ss_dssp SGGGSCCHHHHHHHHHHHHHTT
T ss_pred ChhhCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999997754
No 142
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-38 Score=349.78 Aligned_cols=258 Identities=23% Similarity=0.409 Sum_probs=201.1
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcE----EEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTR----IAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~----vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 741 (983)
++|...++||+|+||.||+|.+. +++. ||+|.+.........+++.+|++++++++||||+++++++.... .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~ 93 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence 57888999999999999999964 4444 57777765555556788999999999999999999999998754 789
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
|+||+++|+|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++..
T Consensus 94 v~~~~~~g~L~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~ 167 (327)
T 3lzb_A 94 ITQLMPFGCLLDYVREH---KDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLL 167 (327)
T ss_dssp EECCCSSCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTC----
T ss_pred EEEecCCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHhhCC---CcCCCCCHHHEEEcCCCCEEEccCcceeEc
Confidence 99999999999998754 346899999999999999999999996 999999999999999999999999999876
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~ 900 (983)
...... .......||+.|+|||.+.+..++.++||||||+++|||++ |+.||.... ...+..
T Consensus 168 ~~~~~~-----------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~--~~~~~~---- 230 (327)
T 3lzb_A 168 GAEEKE-----------YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASEISS---- 230 (327)
T ss_dssp -----------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHH----
T ss_pred cCcccc-----------ccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCC--HHHHHH----
Confidence 543221 11122357889999999999999999999999999999999 999986421 111111
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHh
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQ 967 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~ 967 (983)
.+........+ ..++.++.+++.+||+.||++||++.|+++.|+++.+
T Consensus 231 ------------~~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 278 (327)
T 3lzb_A 231 ------------ILEKGERLPQP-------PICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp ------------HHHTTCCCCCC-------TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred ------------HHHcCCCCCCC-------ccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 11111111111 1244678899999999999999999999999998863
No 143
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=1.8e-38 Score=367.74 Aligned_cols=259 Identities=29% Similarity=0.452 Sum_probs=205.4
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEecc
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPLM 746 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 746 (983)
++|...+.||+|+||.||+|.+.++..||||.++.... ..+.|.+|++++++++||||+++++++.. +..++||||+
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~ 260 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYM 260 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCC
T ss_pred hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC--CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhh
Confidence 45777889999999999999998888899999975443 35789999999999999999999999876 6789999999
Q ss_pred cCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCcc
Q 042568 747 SNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGIDE 826 (983)
Q Consensus 747 ~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~ 826 (983)
++|+|.+++.... ...+++..+..++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+++.......
T Consensus 261 ~~gsL~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~ 335 (452)
T 1fmk_A 261 SKGSLLDFLKGET--GKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEY 335 (452)
T ss_dssp TTCBHHHHHSHHH--HTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC-------
T ss_pred cCCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEECCCCCEEECCCccceecCCCce
Confidence 9999999997532 345899999999999999999999996 99999999999999999999999999987643211
Q ss_pred cccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCCC
Q 042568 827 SVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPHR 905 (983)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~~ 905 (983)
.......+|..|+|||.+.+..++.++||||||+++|||++ |+.||.... ..
T Consensus 336 ------------~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~-----~~---------- 388 (452)
T 1fmk_A 336 ------------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV-----NR---------- 388 (452)
T ss_dssp -------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC-----HH----------
T ss_pred ------------ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCC-----HH----------
Confidence 11122357889999999998899999999999999999999 999985321 11
Q ss_pred CcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcC
Q 042568 906 LDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLS 970 (983)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~ 970 (983)
+..+. +........+ ..++.++.+++.+||+.||++|||++++++.|+.+.....
T Consensus 389 --~~~~~-i~~~~~~~~~-------~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~ 443 (452)
T 1fmk_A 389 --EVLDQ-VERGYRMPCP-------PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE 443 (452)
T ss_dssp --HHHHH-HHTTCCCCCC-------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred --HHHHH-HHcCCCCCCC-------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCC
Confidence 11111 1111111111 2355788999999999999999999999999998865543
No 144
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=5.7e-38 Score=352.47 Aligned_cols=256 Identities=23% Similarity=0.271 Sum_probs=196.7
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|...+.||+|+||.||+|+.. +++.||||++..... ..+.+.+|+.++++++||||+++++++...+..++|||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 96 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA--IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME 96 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT--SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc--ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence 467889999999999999999976 788999999965433 34678899999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCC--EEEcccccccccc
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLT--ALVADFGIAKLVK 822 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~--~kl~Dfgla~~~~ 822 (983)
|+++|+|.+++.. ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++. +||+|||+++...
T Consensus 97 ~~~~~~L~~~l~~----~~~~~~~~~~~i~~ql~~~L~~LH~~~---ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~ 169 (361)
T 3uc3_A 97 YASGGELYERICN----AGRFSEDEARFFFQQLLSGVSYCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSV 169 (361)
T ss_dssp CCCSCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHTT---CCSCCCCGGGEEECSSSSCCEEECCCCCC----
T ss_pred eCCCCCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCceEEEeecCcccccc
Confidence 9999999998864 345899999999999999999999996 999999999999987765 9999999997433
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCcc-chhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTH-GDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k-~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
... ......||+.|+|||.+.+..++.+ +||||+||++|+|++|+.||..... .......
T Consensus 170 ~~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-~~~~~~~---- 230 (361)
T 3uc3_A 170 LHS--------------QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEE-PRDYRKT---- 230 (361)
T ss_dssp -------------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC-----CCCHHHH----
T ss_pred ccC--------------CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCcc-HHHHHHH----
Confidence 211 1123469999999999988877655 8999999999999999999964321 1111111
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGR 964 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 964 (983)
+......... .+. ....+.++.+++.+|++.||++|||+.|+++|-.-
T Consensus 231 --------~~~~~~~~~~--~~~-----~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f 278 (361)
T 3uc3_A 231 --------IQRILSVKYS--IPD-----DIRISPECCHLISRIFVADPATRISIPEIKTHSWF 278 (361)
T ss_dssp --------HHHHHTTCCC--CCT-----TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTSHHH
T ss_pred --------HHHHhcCCCC--CCC-----cCCCCHHHHHHHHHHccCChhHCcCHHHHHhCcch
Confidence 1111111111 110 01134678899999999999999999999987543
No 145
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=7e-39 Score=361.03 Aligned_cols=282 Identities=23% Similarity=0.273 Sum_probs=211.3
Q ss_pred CCCCCHHHHHHHhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcC-----CCCcc
Q 042568 654 NPRVSYKQLIEATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIR-----HRNLI 727 (983)
Q Consensus 654 ~~~~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv 727 (983)
...+++++.....++|.+.++||+|+||.||+|+.. +++.||||+++.. ......+..|+++++.++ ||||+
T Consensus 22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~h~~iv 99 (360)
T 3llt_A 22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI--KKYTRSAKIEADILKKIQNDDINNNNIV 99 (360)
T ss_dssp GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC--HHHHHHHHHHHHHHHHTCCCSTTGGGBC
T ss_pred ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc--hhhhhhhHHHHHHHHHhcccCCCCCCee
Confidence 345555555566789999999999999999999974 6889999998642 234567888999999996 99999
Q ss_pred ceeeEEecCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC-
Q 042568 728 RIITICSKPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE- 806 (983)
Q Consensus 728 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~- 806 (983)
++++++...+..++||||+ +++|.+++.... ...+++..++.++.|++.||+|||+.+ |+||||||+|||++.
T Consensus 100 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~ 173 (360)
T 3llt_A 100 KYHGKFMYYDHMCLIFEPL-GPSLYEIITRNN--YNGFHIEDIKLYCIEILKALNYLRKMS---LTHTDLKPENILLDDP 173 (360)
T ss_dssp CEEEEEEETTEEEEEECCC-CCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCT
T ss_pred cccceeeECCeeEEEEcCC-CCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCcccEEEccc
Confidence 9999999999999999999 899999987543 345899999999999999999999996 999999999999975
Q ss_pred ------------------------CCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCC
Q 042568 807 ------------------------DLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRAS 862 (983)
Q Consensus 807 ------------------------~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~ 862 (983)
++.+||+|||+|+..... .....||+.|+|||++.+..++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~----------------~~~~~gt~~y~aPE~~~~~~~~ 237 (360)
T 3llt_A 174 YFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY----------------HGSIINTRQYRAPEVILNLGWD 237 (360)
T ss_dssp TCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC----------------CCSCCSCGGGCCHHHHTTCCCC
T ss_pred cccccccchhcccccccccccccCCCCEEEEeccCceecCCC----------------CcCccCcccccCcHHHcCCCCC
Confidence 789999999999864421 1234689999999999999999
Q ss_pred ccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCC-----CC----Ccccccc-----
Q 042568 863 THGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAP-----QH----MPIYYNK----- 928 (983)
Q Consensus 863 ~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~----- 928 (983)
.++||||+||++|||++|+.||.... .......+..................... .. .+.....
T Consensus 238 ~~~DiwslG~il~ell~g~~pf~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 315 (360)
T 3llt_A 238 VSSDMWSFGCVLAELYTGSLLFRTHE--HMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIK 315 (360)
T ss_dssp TTHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHH
T ss_pred CccchHHHHHHHHHHHHCCCCCCCCc--HHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhh
Confidence 99999999999999999999996421 11111122222221111111111110000 00 0000000
Q ss_pred --------chHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 929 --------VWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 929 --------~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
........+.+++.+|++.||++|||++|++++
T Consensus 316 ~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~h 356 (360)
T 3llt_A 316 HVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKH 356 (360)
T ss_dssp HHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred hhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcC
Confidence 000012567899999999999999999999864
No 146
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=5.1e-38 Score=344.11 Aligned_cols=265 Identities=29% Similarity=0.392 Sum_probs=205.8
Q ss_pred CCCCCCCccccCCcEeEEEEEECCC----cEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEE-ecCCceeE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDN----TRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITIC-SKPDFKAL 741 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~----~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~l 741 (983)
.+|...++||+|+||.||+|...+. ..||||.+.........+++.+|++++++++||||+++++++ ...+..++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 104 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence 4577789999999999999986422 258999987655555668899999999999999999999986 45567899
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
||||+++|+|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||++++++.+||+|||+++..
T Consensus 105 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~ql~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~ 178 (298)
T 3f66_A 105 VLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDM 178 (298)
T ss_dssp EEECCTTCBHHHHHHCT---TCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSCGGGCCC
T ss_pred EEeCCCCCCHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEECCCCCEEECcccccccc
Confidence 99999999999999643 346899999999999999999999996 999999999999999999999999999876
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCC-CCCcccCCCCchHHHHHh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRR-PTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~-p~~~~~~~~~~l~~~~~~ 900 (983)
....... ........||+.|+|||.+.+..++.++||||+|+++|||++|.. ||... . .......+
T Consensus 179 ~~~~~~~---------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-~-~~~~~~~~-- 245 (298)
T 3f66_A 179 YDKEYYS---------VHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-N-TFDITVYL-- 245 (298)
T ss_dssp SCGGGCB---------C-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTS-C-TTTHHHHH--
T ss_pred cccchhc---------cccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccC-C-HHHHHHHH--
Confidence 5432110 011223468899999999999999999999999999999999554 54321 1 11111111
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCC
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSS 971 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~ 971 (983)
... .....+ ..++.++.+++.+|++.||++|||++|+++.|+++......
T Consensus 246 -------------~~~-~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~ 295 (298)
T 3f66_A 246 -------------LQG-RRLLQP-------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 295 (298)
T ss_dssp -------------HTT-CCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCC
T ss_pred -------------hcC-CCCCCC-------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence 111 111111 11346789999999999999999999999999999876543
No 147
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=6.2e-38 Score=362.39 Aligned_cols=249 Identities=29% Similarity=0.458 Sum_probs=204.9
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|...+.||+|+||.||+|++. +|+.||||+++.... .+....+.+|+++++.++||||+++++++...+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 57888999999999999999975 789999999965432 224568999999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++|+|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++....
T Consensus 96 E~~~gg~L~~~l~~----~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDLkp~NIll~~~~~vkL~DFG~a~~~~~ 168 (476)
T 2y94_A 96 EYVSGGELFDYICK----NGRLDEKESRRLFQQILSGVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSD 168 (476)
T ss_dssp ECCSSEEHHHHTTS----SSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEECTTCCEEECCCSSCEECCT
T ss_pred eCCCCCcHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcccccHHHEEEecCCCeEEEeccchhhccc
Confidence 99999999999874 345899999999999999999999996 99999999999999999999999999987643
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCC-CccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRA-STHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.. ......||+.|+|||.+.+..+ +.++||||+||++|||++|+.||+... .
T Consensus 169 ~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~-----~-------- 221 (476)
T 2y94_A 169 GE--------------FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDH-----V-------- 221 (476)
T ss_dssp TC--------------CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSS-----S--------
T ss_pred cc--------------cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCC-----H--------
Confidence 21 1123479999999999998765 689999999999999999999986321 1
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
............. .+ .....++.+++.+|++.||++|||++|++++-
T Consensus 222 ----~~~~~~i~~~~~~--~p-------~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~hp 268 (476)
T 2y94_A 222 ----PTLFKKICDGIFY--TP-------QYLNPSVISLLKHMLQVDPMKRATIKDIREHE 268 (476)
T ss_dssp ----HHHHHHHHTTCCC--CC-------TTCCHHHHHHHHHHTCSSTTTSCCHHHHHTCH
T ss_pred ----HHHHHHHhcCCcC--CC-------ccCCHHHHHHHHHHcCCCchhCcCHHHHHhCH
Confidence 1112221111111 11 11346788999999999999999999999864
No 148
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=354.55 Aligned_cols=248 Identities=22% Similarity=0.287 Sum_probs=196.6
Q ss_pred CCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEecccCcc
Q 042568 672 SSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPLMSNGS 750 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs 750 (983)
.+.||+|+||.||+|... +|+.||||+++.... ...+.+.+|++++++++||||+++++++...+..++||||+++|+
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~ 172 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGM-KDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGE 172 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCE
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEccccc-ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCc
Confidence 567999999999999964 688999999976433 345789999999999999999999999999999999999999999
Q ss_pred cccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe--CCCCCEEEccccccccccCCcccc
Q 042568 751 LENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL--DEDLTALVADFGIAKLVKGIDESV 828 (983)
Q Consensus 751 L~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl--~~~~~~kl~Dfgla~~~~~~~~~~ 828 (983)
|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+|||+ +.++.+||+|||+++.......
T Consensus 173 L~~~l~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~-- 244 (373)
T 2x4f_A 173 LFDRIIDE---SYNLTELDTILFMKQICEGIRHMHQMY---ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK-- 244 (373)
T ss_dssp EHHHHHHT---GGGCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB--
T ss_pred HHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc--
Confidence 99888643 345899999999999999999999996 9999999999999 6778999999999987653221
Q ss_pred cccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCCCcH
Q 042568 829 NCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHRLDP 908 (983)
Q Consensus 829 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~~~~ 908 (983)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||.... .. +
T Consensus 245 ------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~-----~~------------~ 295 (373)
T 2x4f_A 245 ------------LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN-----DA------------E 295 (373)
T ss_dssp ------------CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS-----HH------------H
T ss_pred ------------cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC-----HH------------H
Confidence 122469999999999999999999999999999999999999986321 11 1
Q ss_pred HHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 909 IVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
.+.......... ....+.....++.+++.+|++.||++|||++|++++-
T Consensus 296 ~~~~i~~~~~~~-----~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp 344 (373)
T 2x4f_A 296 TLNNILACRWDL-----EDEEFQDISEEAKEFISKLLIKEKSWRISASEALKHP 344 (373)
T ss_dssp HHHHHHHTCCCS-----CSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred HHHHHHhccCCC-----ChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCc
Confidence 111111111110 0112234567899999999999999999999999853
No 149
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-38 Score=351.80 Aligned_cols=255 Identities=22% Similarity=0.340 Sum_probs=197.7
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCC--CCccceeeEEecCCceeEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRH--RNLIRIITICSKPDFKALV 742 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lv 742 (983)
.++|.+.+.||+|+||.||+|...+++.||||++..... ....+.+.+|++++++++| |||+++++++......++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 356888999999999999999988899999999976543 2345788999999999986 9999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
||+ .+++|.+++.. ...+++..+..++.|+++||+|||+.+ |+||||||+|||++ ++.+||+|||+++...
T Consensus 88 ~e~-~~~~L~~~l~~----~~~~~~~~~~~i~~qi~~al~~lH~~~---iiHrDikp~NIll~-~~~~kl~DFG~a~~~~ 158 (343)
T 3dbq_A 88 MEC-GNIDLNSWLKK----KKSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQ 158 (343)
T ss_dssp ECC-CSEEHHHHHHH----SCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEE-TTEEEECCCSSSCCC-
T ss_pred EeC-CCCCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEEE-CCcEEEeecccccccC
Confidence 994 57899999875 346899999999999999999999996 99999999999997 6789999999998765
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCC-----------CCCCccchhHHHHHHHHHHHhCCCCCCcccCCC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-----------KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDG 891 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~ 891 (983)
..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......
T Consensus 159 ~~~~~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~- 226 (343)
T 3dbq_A 159 PDTTS-----------VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ- 226 (343)
T ss_dssp ----------------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH-
T ss_pred ccccc-----------ccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhH-
Confidence 32211 11223579999999999864 67899999999999999999999998642110
Q ss_pred CchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 892 SSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 892 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
.. .....+........+. ....++.+++.+|++.||++|||+.|++++-.
T Consensus 227 --~~-------------~~~~~~~~~~~~~~~~-------~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~ 276 (343)
T 3dbq_A 227 --IS-------------KLHAIIDPNHEIEFPD-------IPEKDLQDVLKCCLKRDPKQRISIPELLAHPY 276 (343)
T ss_dssp --HH-------------HHHHHHCTTSCCCCCC-------CSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred --HH-------------HHHHHhcCCcccCCcc-------cCCHHHHHHHHHHcCCChhHCCCHHHHHhCcc
Confidence 00 1111111111111111 12357889999999999999999999998754
No 150
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-37 Score=339.78 Aligned_cols=265 Identities=27% Similarity=0.375 Sum_probs=208.4
Q ss_pred CCCCCCccccCCcEeEEEEEEC-CCc---EEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCce-eEE
Q 042568 668 GFCPSSLIGSGRFGHVYKGVLQ-DNT---RIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFK-ALV 742 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~~-~~~---~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-~lv 742 (983)
.|...++||+|+||.||+|.+. +++ .||+|.+.........+.+.+|++++++++||||+++++++...+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 3455688999999999999853 232 69999997655555678899999999999999999999999766655 999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
+||+.+|+|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 102 ~e~~~~~~L~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 175 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSP---QRNPTVKDLISFGLQVARGMEYLAEQK---FVHRDLAARNCMLDESFTVKVADFGLARDIL 175 (298)
T ss_dssp ECCCTTCBHHHHHHCT---TCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECCTTSSCTTT
T ss_pred EecccCCCHHHHHhcc---ccCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEEeCcCCCccccc
Confidence 9999999999998753 356899999999999999999999996 9999999999999999999999999998664
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
...... ........||+.|+|||...+..++.++||||||+++|+|++|+.|+.... +.......+.
T Consensus 176 ~~~~~~---------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~-~~~~~~~~~~--- 242 (298)
T 3pls_A 176 DREYYS---------VQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHI-DPFDLTHFLA--- 242 (298)
T ss_dssp TGGGGC---------SCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-CGGGHHHHHH---
T ss_pred CCcccc---------cccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccC-CHHHHHHHhh---
Confidence 322110 112233468999999999999999999999999999999999766643211 1111111111
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCC
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSS 971 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~ 971 (983)
.......+ ..++.++.+++.+|++.||++|||++|+++.|+++.+....
T Consensus 243 -------------~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~ 291 (298)
T 3pls_A 243 -------------QGRRLPQP-------EYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLG 291 (298)
T ss_dssp -------------TTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCS
T ss_pred -------------cCCCCCCC-------ccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhc
Confidence 11111111 12346789999999999999999999999999999877654
No 151
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=7.7e-38 Score=342.31 Aligned_cols=281 Identities=21% Similarity=0.308 Sum_probs=211.9
Q ss_pred HhCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEE-ecCCceeEE
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITIC-SKPDFKALV 742 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lv 742 (983)
..++|...+.||+|+||.||+|.. .+++.||||++..... ..++.+|+++++.++|++++..+.++ ...+..++|
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv 83 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK---HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV 83 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc---chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEE
Confidence 457899999999999999999996 5788899998754433 35688999999999988877777665 667778999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe---CCCCCEEEccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL---DEDLTALVADFGIAK 819 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl---~~~~~~kl~Dfgla~ 819 (983)
|||+ +++|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||++ +.++.+||+|||+++
T Consensus 84 ~e~~-~~~L~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~ 156 (296)
T 4hgt_A 84 MELL-GPSLEDLFNFC---SRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK 156 (296)
T ss_dssp EECC-CCBHHHHHHHT---TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECCGGGTTCEEECCCTTCE
T ss_pred EEcc-CCCHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeeeeccCCCCeEEEecCccce
Confidence 9999 89999988643 346999999999999999999999996 9999999999999 789999999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCC-chHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGS-SLHEWV 898 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~-~l~~~~ 898 (983)
............ ........||+.|+|||.+.+..++.++|||||||++|||++|+.||........ ....
T Consensus 157 ~~~~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~-- 228 (296)
T 4hgt_A 157 KYRDARTHQHIP------YRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYE-- 228 (296)
T ss_dssp ECBCTTTCCBCC------CCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHH--
T ss_pred eccCcccCccCC------CCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhh--
Confidence 776433221100 0122345799999999999999999999999999999999999999975322111 1000
Q ss_pred HhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCCCc-hhHH
Q 042568 899 KRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSSPS-SLIE 977 (983)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~~-~~~~ 977 (983)
......... . . .......+.++.+++.+|++.||++|||++++++.|+++.+....+. +..+
T Consensus 229 ---------~~~~~~~~~-~---~----~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~~~~~~~d 291 (296)
T 4hgt_A 229 ---------RISEKKMST-P---I----EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFD 291 (296)
T ss_dssp ---------HHHHHHHHS-C---H----HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTCCTTCCCG
T ss_pred ---------hhhcccccc-h---h----hhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCccCccc
Confidence 011111100 0 0 00011235689999999999999999999999999999988765533 3445
Q ss_pred Hhh
Q 042568 978 EAA 980 (983)
Q Consensus 978 ~~~ 980 (983)
|.+
T Consensus 292 w~~ 294 (296)
T 4hgt_A 292 WNM 294 (296)
T ss_dssp GGG
T ss_pred hhh
Confidence 544
No 152
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=1.2e-37 Score=337.64 Aligned_cols=258 Identities=27% Similarity=0.446 Sum_probs=208.5
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEecc
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPLM 746 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 746 (983)
++|...+.||+|+||.||+|...+++.||||.+..... ..+.+.+|++++++++||||+++++++.. +..++||||+
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~ 89 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYM 89 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECC
T ss_pred HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc--cHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEecC
Confidence 46778899999999999999998888999999865433 35789999999999999999999999864 5679999999
Q ss_pred cCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCcc
Q 042568 747 SNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGIDE 826 (983)
Q Consensus 747 ~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~ 826 (983)
++++|.+++.... ...+++..++.++.|+++||+|||+.+ |+||||||+||++++++.+||+|||.++.......
T Consensus 90 ~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 164 (279)
T 1qpc_A 90 ENGSLVDFLKTPS--GIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY 164 (279)
T ss_dssp TTCBHHHHTTSHH--HHTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE
T ss_pred CCCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHhhEEEcCCCCEEECCCcccccccCccc
Confidence 9999999987532 236899999999999999999999996 99999999999999999999999999987653221
Q ss_pred cccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCCC
Q 042568 827 SVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPHR 905 (983)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~~ 905 (983)
.......+|..|+|||.+.+..++.++||||||+++|||++ |+.||.... ..+
T Consensus 165 ------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-----~~~--------- 218 (279)
T 1qpc_A 165 ------------TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT-----NPE--------- 218 (279)
T ss_dssp ------------ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC-----HHH---------
T ss_pred ------------ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccC-----HHH---------
Confidence 11122357889999999988889999999999999999999 899985321 111
Q ss_pred CcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 906 LDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
.... +........+ ..++.++.+++.+|++.||++|||++++++.|+++....
T Consensus 219 ---~~~~-~~~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 271 (279)
T 1qpc_A 219 ---VIQN-LERGYRMVRP-------DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271 (279)
T ss_dssp ---HHHH-HHTTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred ---HHHH-HhcccCCCCc-------ccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhc
Confidence 1111 1111111111 124567899999999999999999999999999987654
No 153
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=1.1e-37 Score=338.97 Aligned_cols=255 Identities=23% Similarity=0.305 Sum_probs=206.0
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
.++|.+.+.||+|+||.||+|... +++.||+|++..... ....+.+.+|++++++++||||+++++++......++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 467889999999999999999965 588999999976542 334577889999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCC---EEEcccccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLT---ALVADFGIAKL 820 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~---~kl~Dfgla~~ 820 (983)
||+++++|.+++.. ...+++..+..++.|+++||+|||+.+ |+||||||+||+++.++. +||+|||.+..
T Consensus 85 e~~~~~~l~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~ 157 (284)
T 3kk8_A 85 DLVTGGELFEDIVA----REFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIE 157 (284)
T ss_dssp CCCCSCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred ecCCCCCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---cCcCCCCHHHEEEecCCCCCcEEEeeceeeEE
Confidence 99999999888764 345899999999999999999999996 999999999999986655 99999999976
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHh
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~ 900 (983)
...... .....||+.|+|||.+.+..++.++||||+|+++|+|++|+.||.... ..
T Consensus 158 ~~~~~~--------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~-----~~----- 213 (284)
T 3kk8_A 158 VNDSEA--------------WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED-----QH----- 213 (284)
T ss_dssp CCSSCB--------------CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HH-----
T ss_pred cccCcc--------------ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCc-----hh-----
Confidence 653221 122469999999999999999999999999999999999999985321 11
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
............... ..+...+.++.+++.+|++.||++|||++|++++-.
T Consensus 214 -------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~ 264 (284)
T 3kk8_A 214 -------RLYAQIKAGAYDYPS-----PEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPW 264 (284)
T ss_dssp -------HHHHHHHHTCCCCCT-----TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTSHH
T ss_pred -------HHHHHHHhccccCCc-----hhhcccCHHHHHHHHHHcccChhhCCCHHHHhcCcc
Confidence 111111111111111 112235577899999999999999999999998643
No 154
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=4.4e-38 Score=351.05 Aligned_cols=250 Identities=22% Similarity=0.299 Sum_probs=203.5
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 741 (983)
.++|...+.||+|+||.||+|+.. +++.||||+++... .....+.+.+|.++++.+ +||+|+++++++...+..++
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 98 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 98 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence 467889999999999999999976 47889999997543 223456788999999988 89999999999999999999
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
||||+++|+|.+++... ..+++..++.++.|++.||+|||+++ |+||||||+|||++.++.+||+|||+|+..
T Consensus 99 v~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~ 171 (353)
T 2i0e_A 99 VMEYVNGGDLMYHIQQV----GRFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKEN 171 (353)
T ss_dssp EEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEEcCCCcEEEEeCCccccc
Confidence 99999999999998753 45899999999999999999999996 999999999999999999999999999854
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
.... .......||+.|+|||++.+..++.++||||+||++|||++|+.||... ..
T Consensus 172 ~~~~-------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~------- 226 (353)
T 2i0e_A 172 IWDG-------------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-----DE------- 226 (353)
T ss_dssp CCTT-------------CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS-----SH-------
T ss_pred ccCC-------------cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC-----CH-------
Confidence 3211 1123357999999999999999999999999999999999999998632 11
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCC-----HHHHHHH
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPS-----MLDVAHE 961 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-----~~evl~~ 961 (983)
.+..+....... ..| ...+.++.+++.+|++.||++||+ ++|+++|
T Consensus 227 -----~~~~~~i~~~~~--~~p-------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h 277 (353)
T 2i0e_A 227 -----DELFQSIMEHNV--AYP-------KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH 277 (353)
T ss_dssp -----HHHHHHHHHCCC--CCC-------TTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred -----HHHHHHHHhCCC--CCC-------CCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence 111222221111 111 124567899999999999999995 5788765
No 155
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-38 Score=345.11 Aligned_cols=246 Identities=23% Similarity=0.258 Sum_probs=193.9
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-chhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-EITGSFKRECQILKRI-RHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|...++||+|+||+||+|... +++.||||++...... ....++..|+..+.++ +||||+++++++...+..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 57888999999999999999976 7899999998654322 2344566677666665 8999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+ +++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+|||++.++.+||+|||+++....
T Consensus 137 e~~-~~~L~~~~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~ 209 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAW---GASLPEAQVWGYLRDTLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGLLVELGT 209 (311)
T ss_dssp ECC-CCBHHHHHHHH---CSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECGGGCEEECCCTTCEECC-
T ss_pred ecc-CCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEccceeeeeccc
Confidence 999 66888887653 346999999999999999999999996 99999999999999999999999999986643
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
.. ......||++|+|||++.+ .++.++|||||||++|||++|..|+... .....+..
T Consensus 210 ~~--------------~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~----~~~~~~~~---- 266 (311)
T 3p1a_A 210 AG--------------AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG----EGWQQLRQ---- 266 (311)
T ss_dssp -------------------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH----HHHHHHTT----
T ss_pred CC--------------CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc----cHHHHHhc----
Confidence 21 1123469999999999876 6899999999999999999997775321 11111100
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
... +. ......+.++.+++.+|++.||++|||++|++++
T Consensus 267 ~~~----------------~~---~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 305 (311)
T 3p1a_A 267 GYL----------------PP---EFTAGLSSELRSVLVMMLEPDPKLRATAEALLAL 305 (311)
T ss_dssp TCC----------------CH---HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred cCC----------------Cc---ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence 000 00 0012245679999999999999999999999874
No 156
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=7.3e-38 Score=338.54 Aligned_cols=248 Identities=25% Similarity=0.402 Sum_probs=181.1
Q ss_pred CCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|.+.+.||+|+||.||+|.. .+++.||+|++.... ..+..+.+.+|++++++++||||+++++++...+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 5799999999999999999995 468899999986543 2234678999999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+ ++++.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||++++++.+||+|||+++....
T Consensus 93 e~~-~~~l~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 164 (275)
T 2eue_A 93 EYA-GNELFDYIVQ----RDKMSEQEARRFFQQIISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164 (275)
T ss_dssp ECC-CEEHHHHHHT----SSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTSCEEECCSSCC-----
T ss_pred hhc-CCcHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---CeeccCChHhEEECCCCCEEEeecccceeccC
Confidence 999 5677777654 345899999999999999999999996 99999999999999999999999999986543
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCC-CccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRA-STHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.. ......||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||... ....
T Consensus 165 ~~--------------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~------ 219 (275)
T 2eue_A 165 GN--------------FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE-----SIPV------ 219 (275)
T ss_dssp ------------------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCS-----SHHH------
T ss_pred cc--------------cccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCC-----CHHH------
Confidence 21 1122469999999999988765 78999999999999999999998632 1111
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
.... +..... ..+ ...+.++.+++.+|++.||++|||++|++++-
T Consensus 220 ------~~~~-~~~~~~-~~~-------~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h~ 264 (275)
T 2eue_A 220 ------LFKN-ISNGVY-TLP-------KFLSPGAAGLIKRMLIVNPLNRISIHEIMQDD 264 (275)
T ss_dssp ------HHHH-HHHTCC-CCC-------TTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCH
T ss_pred ------HHHH-HHhCCC-CCC-------ccCCHHHHHHHHHHhhcCHhHCCCHHHHhhCC
Confidence 1111 111111 111 12346788999999999999999999998764
No 157
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=7.4e-38 Score=339.63 Aligned_cols=259 Identities=24% Similarity=0.387 Sum_probs=205.5
Q ss_pred hCCCCCCCccccCCcEeEEEEEECC----CcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQD----NTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~----~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 741 (983)
.++|...+.||+|+||.||+|.+.. +..||||.+......+..+++.+|++++++++||||+++++++.. +..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence 3578888999999999999998542 235999999766555567889999999999999999999999865 45689
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
||||+++++|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++..
T Consensus 90 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 163 (281)
T 3cc6_A 90 IMELYPYGELGHYLERN---KNSLKVLTLVLYSLQICKAMAYLESIN---CVHRDIAVRNILVASPECVKLGDFGLSRYI 163 (281)
T ss_dssp EEECCTTCBHHHHHHHH---TTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEEETTEEEECCCCGGGCC
T ss_pred EEecCCCCCHHHHHHhc---cccCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEECCCCcEEeCccCCCccc
Confidence 99999999999998753 345899999999999999999999996 999999999999999999999999999876
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~ 900 (983)
...... ......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||..... ......+.
T Consensus 164 ~~~~~~------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~--~~~~~~~~- 228 (281)
T 3cc6_A 164 EDEDYY------------KASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN--KDVIGVLE- 228 (281)
T ss_dssp ---------------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG--GGHHHHHH-
T ss_pred cccccc------------ccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh--HHHHHHHh-
Confidence 532211 1122357889999999998899999999999999999998 9999863211 11111111
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
.......+ ..++..+.+++.+|++.||++|||+.|++++|+++.+.
T Consensus 229 ---------------~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 274 (281)
T 3cc6_A 229 ---------------KGDRLPKP-------DLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQM 274 (281)
T ss_dssp ---------------HTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ---------------cCCCCCCC-------CCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence 11111111 12346789999999999999999999999999988653
No 158
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=349.24 Aligned_cols=275 Identities=24% Similarity=0.304 Sum_probs=201.5
Q ss_pred HhCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccC----cchhHHHHHHHHHHHhcC---CCCccceeeEEecC
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTT----GEITGSFKRECQILKRIR---HRNLIRIITICSKP 736 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~----~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 736 (983)
.+++|.+.+.||+|+||+||+|+. .+++.||||++..... ......+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 357899999999999999999996 4688999999865432 123456778888888775 99999999999765
Q ss_pred C-----ceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEE
Q 042568 737 D-----FKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTAL 811 (983)
Q Consensus 737 ~-----~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~k 811 (983)
. ..++||||++ ++|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+|
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~k 160 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAP--PPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVK 160 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCC--TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCTTTEEECTTSCEE
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCEE
Confidence 5 4789999997 59999887543 344899999999999999999999996 99999999999999999999
Q ss_pred EccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCC
Q 042568 812 VADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDG 891 (983)
Q Consensus 812 l~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~ 891 (983)
|+|||+++...... ......||+.|+|||.+.+..++.++||||+||++|||++|+.||..... .
T Consensus 161 l~Dfg~a~~~~~~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~ 225 (308)
T 3g33_A 161 LADFGLARIYSYQM--------------ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSE-A 225 (308)
T ss_dssp ECSCSCTTTSTTCC--------------CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSH-H
T ss_pred EeeCccccccCCCc--------------ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCH-H
Confidence 99999998654321 11235799999999999999999999999999999999999999864211 1
Q ss_pred CchHHHHHhhCC-C-C-CcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 892 SSLHEWVKRHYP-H-R-LDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 892 ~~l~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
..+......... . . ..... ...........+........+...++.+++.+|++.||++|||+.|++++
T Consensus 226 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 297 (308)
T 3g33_A 226 DQLGKIFDLIGLPPEDDWPRDV-SLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH 297 (308)
T ss_dssp HHHHHHHHHHCCCCTTTSCSSC-SSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHHHhCCCChhhccchh-hccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence 111111111000 0 0 00000 00000000000111111122355778999999999999999999999976
No 159
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=4.2e-38 Score=348.88 Aligned_cols=263 Identities=27% Similarity=0.438 Sum_probs=211.2
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC------CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCc
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ------DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDF 738 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~------~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 738 (983)
..++|...+.||+|+||.||+|.+. +++.||||.+..........++.+|++++++++||||+++++++...+.
T Consensus 23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 102 (322)
T 1p4o_A 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP 102 (322)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSS
T ss_pred hhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCc
Confidence 4567888999999999999999864 3678999999766555556779999999999999999999999999999
Q ss_pred eeEEEecccCcccccccccccC------cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEE
Q 042568 739 KALVLPLMSNGSLENHLYPSHG------LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALV 812 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~------~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl 812 (983)
.++||||+++|+|.+++..... ....+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||
T Consensus 103 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~NIli~~~~~~kl 179 (322)
T 1p4o_A 103 TLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVKI 179 (322)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEECTTCCEEE
T ss_pred cEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCC---CccCCCccceEEEcCCCeEEE
Confidence 9999999999999999875321 1245799999999999999999999996 999999999999999999999
Q ss_pred ccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCC
Q 042568 813 ADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDG 891 (983)
Q Consensus 813 ~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~ 891 (983)
+|||+++........ .......||+.|+|||.+.+..++.++||||+|+++|||++ |+.||....
T Consensus 180 ~Dfg~~~~~~~~~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--- 245 (322)
T 1p4o_A 180 GDFGMTRDIYETDYY-----------RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS--- 245 (322)
T ss_dssp CCTTCCCGGGGGGCE-----------EGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC---
T ss_pred CcCcccccccccccc-----------ccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCC---
Confidence 999999865432211 11223467899999999998899999999999999999999 888885321
Q ss_pred CchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhH
Q 042568 892 SSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLK 966 (983)
Q Consensus 892 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 966 (983)
..+ .......... ...+ ..++.++.+++.+|++.||++|||+.|++++|+++.
T Consensus 246 --~~~------------~~~~~~~~~~-~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~ 298 (322)
T 1p4o_A 246 --NEQ------------VLRFVMEGGL-LDKP-------DNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEM 298 (322)
T ss_dssp --HHH------------HHHHHHTTCC-CCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred --HHH------------HHHHHHcCCc-CCCC-------CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhh
Confidence 111 1111111111 0011 124567899999999999999999999999998763
No 160
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=343.79 Aligned_cols=272 Identities=19% Similarity=0.293 Sum_probs=201.0
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-chhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-EITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
++|...+.||+|+||.||+|... +++.||||++...... ...+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 57888999999999999999975 5889999998655433 245678899999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|+++++|.+++.. ...+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++.....
T Consensus 83 ~~~~~~l~~~~~~----~~~~~~~~~~~i~~~l~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 155 (311)
T 4agu_A 83 YCDHTVLHELDRY----QRGVPEHLVKSITWQTLQAVNFCHKHN---CIHRDVKPENILITKHSVIKLCDFGFARLLTGP 155 (311)
T ss_dssp CCSEEHHHHHHHT----SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred eCCCchHHHHHhh----hcCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCChhhEEEcCCCCEEEeeCCCchhccCc
Confidence 9999999887754 345899999999999999999999996 999999999999999999999999999876532
Q ss_pred cccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
.. ......||+.|+|||.+.+ ..++.++||||+|+++|+|++|+.||..... ......+.....
T Consensus 156 ~~-------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~ 220 (311)
T 4agu_A 156 SD-------------YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSD--VDQLYLIRKTLG 220 (311)
T ss_dssp -----------------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHHHC
T ss_pred cc-------------ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHhc
Confidence 21 1123468999999999876 6689999999999999999999999864211 111111111111
Q ss_pred CCCcHHHHHHHhh---cCCCCCcc-----ccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 904 HRLDPIVEKAIAK---YAPQHMPI-----YYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 904 ~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
...... ...... ......+. .....+...+.++.+++.+|++.||++|||++|++++
T Consensus 221 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 285 (311)
T 4agu_A 221 DLIPRH-QQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH 285 (311)
T ss_dssp SCCHHH-HHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred cccccc-ccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence 111100 000000 00000000 0011123356678999999999999999999999975
No 161
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=4.5e-40 Score=361.37 Aligned_cols=268 Identities=24% Similarity=0.361 Sum_probs=191.4
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHh--cCCCCccceeeEEecCC----ce
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKR--IRHRNLIRIITICSKPD----FK 739 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~~ 739 (983)
.++|...+.||+|+||.||+|++. ++.||||+++.. ....+.+|.+++.. ++||||+++++++.... ..
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 76 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQL 76 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T----THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc----chhhHHHHHHHHHHHhccCcceeeeeeecccCCCcccee
Confidence 357899999999999999999875 889999998532 34667888888887 79999999999997776 77
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHh--------ccCCCCeEeecCCCCCeEeCCCCCEE
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLH--------HHSPIKVVHCDLKPSNILLDEDLTAL 811 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH--------~~~~~~ivH~Dikp~NiLl~~~~~~k 811 (983)
++||||+++|+|.+++.. ..+++..++.++.|+++||+||| +.+ |+||||||+||+++.++.+|
T Consensus 77 ~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~Nil~~~~~~~k 148 (303)
T 3gxj_A 77 WLVSDYHEHGSLFDYLNR-----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA---IAHRDLKSKNILVKKNGTCC 148 (303)
T ss_dssp EEEEECCTTCCHHHHHHH-----CCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-
T ss_pred EEEEeccCCCCHHHHHhc-----cCcchHHHHHHHHHHHHHHHHHHHHHhhhccCCC---EeeCcCCHHHeEECCCCCEE
Confidence 999999999999999963 35788889999999999999999 764 99999999999999999999
Q ss_pred EccccccccccCCcccccccCCCCccccccCccccccccccccccCCC------CCCccchhHHHHHHHHHHHhC-----
Q 042568 812 VADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK------RASTHGDVYSFGVLLLEIVTG----- 880 (983)
Q Consensus 812 l~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~k~Dv~SlG~il~elltg----- 880 (983)
|+|||+++......... ........||+.|+|||.+.+. .++.++|||||||++|||++|
T Consensus 149 l~DFg~a~~~~~~~~~~---------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~ 219 (303)
T 3gxj_A 149 IADLGLAVRHDSATDTI---------DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGG 219 (303)
T ss_dssp BCCCCC-CCEETTTTEE---------SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTT
T ss_pred EeecCcceeccCCCccc---------ccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCcc
Confidence 99999998665432211 1112334799999999998876 445689999999999999999
Q ss_pred -----CCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCH
Q 042568 881 -----RRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSM 955 (983)
Q Consensus 881 -----~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~ 955 (983)
+.||......... .................+... ...+++..+.+++.+||+.||++|||+
T Consensus 220 ~~~~~~~p~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~cl~~dP~~Rps~ 285 (303)
T 3gxj_A 220 IHEDYQLPYYDLVPSDPS------------VEEMRKVVCEQKLRPNIPNRW--QSCEALRVMAKIMRECWYANGAARLTA 285 (303)
T ss_dssp BC-CCCCTTTTTCC-CCC------------CC-CHHHHTTSCCCCCCCGGG--GSSHHHHHHHHHHHTTCCSSGGGSCCH
T ss_pred ccceeeccccccCCCCcc------------HHHHHHHHHHhhcCCCccccc--cchhhHHHHHHHHHHHhccCcccCCCH
Confidence 4554332211111 111111111111111111111 123577889999999999999999999
Q ss_pred HHHHHHHHHhHhhc
Q 042568 956 LDVAHEMGRLKQYL 969 (983)
Q Consensus 956 ~evl~~L~~~~~~~ 969 (983)
+|+++.|+++.+..
T Consensus 286 ~~i~~~L~~l~~~~ 299 (303)
T 3gxj_A 286 LRIKKTLSQLSQQE 299 (303)
T ss_dssp HHHHHHHHC-CCC-
T ss_pred HHHHHHHHHhhhhc
Confidence 99999999886543
No 162
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=3.4e-38 Score=349.25 Aligned_cols=253 Identities=23% Similarity=0.312 Sum_probs=183.9
Q ss_pred CCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcC-CCCccceeeEEecCCceeEEEecccCc
Q 042568 672 SSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIR-HRNLIRIITICSKPDFKALVLPLMSNG 749 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g 749 (983)
.+.||+|+||.||+|... +++.||||++... ....+.+|+++++.++ ||||+++++++.+....++||||+++|
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~ 91 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR----MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGG 91 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG----GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh----hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCC
Confidence 478999999999999975 6889999998543 3467889999999997 999999999999999999999999999
Q ss_pred ccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC---CEEEccccccccccCCcc
Q 042568 750 SLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL---TALVADFGIAKLVKGIDE 826 (983)
Q Consensus 750 sL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~---~~kl~Dfgla~~~~~~~~ 826 (983)
+|.+++.. ...+++..+..++.|+++||+|||+.+ |+||||||+||+++.++ .+||+|||+++.......
T Consensus 92 ~L~~~l~~----~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~ 164 (325)
T 3kn6_A 92 ELFERIKK----KKHFSETEASYIMRKLVSAVSHMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ 164 (325)
T ss_dssp BHHHHHHH----CSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEC----CEEEECCCTTCEECCC---
T ss_pred cHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---CeecCCCHHHEEEecCCCcccEEEeccccceecCCCCC
Confidence 99999875 346899999999999999999999996 99999999999997665 899999999986543221
Q ss_pred cccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCCC
Q 042568 827 SVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHRL 906 (983)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~~ 906 (983)
......||+.|+|||.+.+..++.++||||+|+++|||++|+.||........ ....
T Consensus 165 -------------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~----------~~~~ 221 (325)
T 3kn6_A 165 -------------PLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLT----------CTSA 221 (325)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-----------------CCCH
T ss_pred -------------cccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccc----------cccH
Confidence 11234689999999999999999999999999999999999999964321100 0001
Q ss_pred cHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 907 DPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
.+..+....... ......|...+.++.+++.+|++.||++|||++|++++-.
T Consensus 222 ~~~~~~i~~~~~-----~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w 273 (325)
T 3kn6_A 222 VEIMKKIKKGDF-----SFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEW 273 (325)
T ss_dssp HHHHHHHTTTCC-----CCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGG
T ss_pred HHHHHHHHcCCC-----CCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcChh
Confidence 111111111111 1112234456778999999999999999999999987643
No 163
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=8e-38 Score=339.01 Aligned_cols=253 Identities=25% Similarity=0.383 Sum_probs=203.3
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
.++|.+.+.||+|+||.||+|... +++.||||++..... ......+.+|++++++++||||+++++++...+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 357888999999999999999965 567899999865432 22356789999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|||+++|+|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.++|+|||++....
T Consensus 88 ~e~~~~~~l~~~l~~~----~~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~ 160 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKL----SKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAP 160 (279)
T ss_dssp ECCCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHTTT---CEECCCCGGGEEECTTSCEEECSCCEESCC-
T ss_pred EecCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHhEEEcCCCCEEEEeccccccCC
Confidence 9999999999988653 45899999999999999999999986 9999999999999999999999999986543
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
... .....||+.|+|||.+.+..++.++||||+|+++|+|++|+.||... ....
T Consensus 161 ~~~---------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~------ 214 (279)
T 3fdn_A 161 SSR---------------RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN-----TYQE------ 214 (279)
T ss_dssp ----------------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHH------
T ss_pred ccc---------------ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC-----cHHH------
Confidence 211 12246899999999999999999999999999999999999998632 1111
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLK 966 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 966 (983)
.... +..... ..+ ...+.++.+++.+|++.||++|||++|++++-.--.
T Consensus 215 ------~~~~-~~~~~~-~~~-------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~ 263 (279)
T 3fdn_A 215 ------TYKR-ISRVEF-TFP-------DFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITA 263 (279)
T ss_dssp ------HHHH-HHHTCC-CCC-------TTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCHHHHH
T ss_pred ------HHHH-HHhCCC-CCC-------CcCCHHHHHHHHHHhccChhhCCCHHHHhhCccccC
Confidence 1111 111111 111 113467889999999999999999999999865443
No 164
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=3e-38 Score=348.48 Aligned_cols=269 Identities=27% Similarity=0.425 Sum_probs=201.3
Q ss_pred HHHhCCCCCCCccccCCcEeEEEEEEC----CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCC
Q 042568 663 IEATGGFCPSSLIGSGRFGHVYKGVLQ----DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPD 737 (983)
Q Consensus 663 ~~~~~~f~~~~~iG~G~~g~Vy~~~~~----~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 737 (983)
....++|...+.||+|+||.||+|... ++..||||.++.... ....+.+.+|++++++++||||+++++++...+
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~ 109 (313)
T 3brb_A 30 VIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMS 109 (313)
T ss_dssp BCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC--
T ss_pred ccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecc
Confidence 334567888999999999999999854 344799999875533 334577999999999999999999999997655
Q ss_pred c-----eeEEEecccCccccccccccc--CcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCE
Q 042568 738 F-----KALVLPLMSNGSLENHLYPSH--GLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTA 810 (983)
Q Consensus 738 ~-----~~lv~e~~~~gsL~~~l~~~~--~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~ 810 (983)
. .++||||+++|+|.+++.... .....+++..++.++.|+++||.|||+.+ |+||||||+||+++.++.+
T Consensus 110 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~ 186 (313)
T 3brb_A 110 SQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRN---FLHRDLAARNCMLRDDMTV 186 (313)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCSGGGEEECTTSCE
T ss_pred ccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcE
Confidence 3 499999999999999884322 12456999999999999999999999996 9999999999999999999
Q ss_pred EEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccC
Q 042568 811 LVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFH 889 (983)
Q Consensus 811 kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~ 889 (983)
||+|||+++........ .......+++.|+|||.+.+..++.++||||||+++|||++ |+.||.....
T Consensus 187 kl~Dfg~~~~~~~~~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~ 255 (313)
T 3brb_A 187 CVADFGLSKKIYSGDYY-----------RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQN 255 (313)
T ss_dssp EECSCSCC---------------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred EEeecCcceeccccccc-----------CcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCH
Confidence 99999999866432211 11223457889999999999999999999999999999999 8888853211
Q ss_pred CCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 890 DGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 890 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
. ...+........ ..+ ..++.++.+++.+|++.||++|||+.+++++|+++.+..
T Consensus 256 --~---------------~~~~~~~~~~~~-~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l 310 (313)
T 3brb_A 256 --H---------------EMYDYLLHGHRL-KQP-------EDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL 310 (313)
T ss_dssp --G---------------GHHHHHHTTCCC-CCB-------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred --H---------------HHHHHHHcCCCC-CCC-------ccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 1 111111111111 111 224567899999999999999999999999999998765
Q ss_pred C
Q 042568 970 S 970 (983)
Q Consensus 970 ~ 970 (983)
.
T Consensus 311 p 311 (313)
T 3brb_A 311 P 311 (313)
T ss_dssp -
T ss_pred C
Confidence 3
No 165
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.2e-39 Score=363.47 Aligned_cols=263 Identities=20% Similarity=0.210 Sum_probs=206.4
Q ss_pred HHHHHHHhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEec
Q 042568 659 YKQLIEATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSK 735 (983)
Q Consensus 659 ~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 735 (983)
+++.....++|...++||+|+||.||+|+.. +++.||||+++... .....+.+.+|.+++..++||||+++++++.+
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 132 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD 132 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence 3344445678999999999999999999975 68999999996532 12234568899999999999999999999999
Q ss_pred CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccc
Q 042568 736 PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADF 815 (983)
Q Consensus 736 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Df 815 (983)
.+..++||||+++|+|.+++... ...+++..++.++.||+.||+|||+.+ |+||||||+|||++.++.+||+||
T Consensus 133 ~~~~~lVmE~~~gg~L~~~l~~~---~~~l~~~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILld~~g~vkL~DF 206 (412)
T 2vd5_A 133 ENYLYLVMEYYVGGDLLTLLSKF---GERIPAEMARFYLAEIVMAIDSVHRLG---YVHRDIKPDNILLDRCGHIRLADF 206 (412)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHH---SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCC
T ss_pred CCEEEEEEcCCCCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccCHHHeeecCCCCEEEeec
Confidence 99999999999999999999753 246899999999999999999999996 999999999999999999999999
Q ss_pred cccccccCCcccccccCCCCccccccCccccccccccccccC-------CCCCCccchhHHHHHHHHHHHhCCCCCCccc
Q 042568 816 GIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM-------GKRASTHGDVYSFGVLLLEIVTGRRPTDVLF 888 (983)
Q Consensus 816 gla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~k~Dv~SlG~il~elltg~~p~~~~~ 888 (983)
|+++....... ......+||+.|+|||++. +..++.++|||||||++|||++|+.||....
T Consensus 207 Gla~~~~~~~~------------~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~ 274 (412)
T 2vd5_A 207 GSCLKLRADGT------------VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADS 274 (412)
T ss_dssp TTCEECCTTSC------------EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred hhheeccCCCc------------cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCC
Confidence 99987653221 1122357999999999987 4568999999999999999999999986321
Q ss_pred CCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCC---CCHHHHHHH
Q 042568 889 HDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTR---PSMLDVAHE 961 (983)
Q Consensus 889 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R---Ps~~evl~~ 961 (983)
..+ .....+........|.. ....+.++.+++.+|+. +|++| |+++|+++|
T Consensus 275 -----~~~------------~~~~i~~~~~~~~~p~~----~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H 328 (412)
T 2vd5_A 275 -----TAE------------TYGKIVHYKEHLSLPLV----DEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTH 328 (412)
T ss_dssp -----HHH------------HHHHHHTHHHHCCCC--------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred -----HHH------------HHHHHHhcccCcCCCcc----ccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence 111 11111110000001100 11245789999999999 99998 699999875
No 166
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=1.5e-38 Score=350.51 Aligned_cols=262 Identities=21% Similarity=0.328 Sum_probs=197.3
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEecCCce---
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSKPDFK--- 739 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 739 (983)
.++|.+.+.||+|+||.||+|.+ .+++.||||++..... .+...++.+|++++++++||||+++++++......
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 35788899999999999999996 5788899999976532 23456789999999999999999999998765543
Q ss_pred -eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccc
Q 042568 740 -ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIA 818 (983)
Q Consensus 740 -~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla 818 (983)
++||||+++++|.+++... ..+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||++
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~a 163 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTE----GPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIA 163 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEETTSCEEECCCSCC
T ss_pred cEEEEecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEcCCCCEEEeeccCc
Confidence 9999999999999998753 45899999999999999999999996 999999999999999999999999999
Q ss_pred ccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHH
Q 042568 819 KLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWV 898 (983)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~ 898 (983)
+......... .......||+.|+|||.+.+..++.++||||||+++|||++|+.||.... ....
T Consensus 164 ~~~~~~~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~-----~~~~- 227 (311)
T 3ork_A 164 RAIADSGNSV----------TQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS-----PVSV- 227 (311)
T ss_dssp ----------------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHH-
T ss_pred cccccccccc----------ccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC-----hHHH-
Confidence 8765432110 12223569999999999999999999999999999999999999986321 1111
Q ss_pred HhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHH-HHHHHhH
Q 042568 899 KRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVA-HEMGRLK 966 (983)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl-~~L~~~~ 966 (983)
.......... .+ ...+...+.++.+++.+|++.||++||++.+++ +.+.++.
T Consensus 228 -----------~~~~~~~~~~--~~---~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~ 280 (311)
T 3ork_A 228 -----------AYQHVREDPI--PP---SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 280 (311)
T ss_dssp -----------HHHHHHCCCC--CH---HHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred -----------HHHHhcCCCC--Cc---ccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHh
Confidence 1111111000 00 001122456789999999999999999777665 4555443
No 167
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=7.2e-38 Score=358.92 Aligned_cols=255 Identities=23% Similarity=0.349 Sum_probs=194.9
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-------cchhHHHHHHHHHHHhcCCCCccceeeEEecC
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-------GEITGSFKRECQILKRIRHRNLIRIITICSKP 736 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 736 (983)
..++|...+.||+|+||.||+|... +++.||||++..... ......+.+|++++++++||||+++++++..
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~- 211 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA- 211 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence 4578999999999999999999965 678999999865421 1123468899999999999999999999865
Q ss_pred CceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCC---CCEEEc
Q 042568 737 DFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDED---LTALVA 813 (983)
Q Consensus 737 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~---~~~kl~ 813 (983)
+..++||||+++|+|.+++.. ...+++..++.++.|+++||+|||+++ |+||||||+|||++.+ +.+||+
T Consensus 212 ~~~~lv~e~~~~g~L~~~l~~----~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~~~~kl~ 284 (419)
T 3i6u_A 212 EDYYIVLELMEGGELFDKVVG----NKRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKIT 284 (419)
T ss_dssp SEEEEEEECCTTCBGGGGTSS----SCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSSSCCEEEC
T ss_pred CceEEEEEcCCCCcHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCCCcceEEEe
Confidence 457999999999999998864 346899999999999999999999996 9999999999999754 459999
Q ss_pred cccccccccCCcccccccCCCCccccccCccccccccccccccCC---CCCCccchhHHHHHHHHHHHhCCCCCCcccCC
Q 042568 814 DFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG---KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHD 890 (983)
Q Consensus 814 Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~ 890 (983)
|||+|+...... ......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.....
T Consensus 285 DFG~a~~~~~~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~- 349 (419)
T 3i6u_A 285 DFGHSKILGETS--------------LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT- 349 (419)
T ss_dssp CSSTTTSCC-------------------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSS-
T ss_pred ecccceecCCCc--------------cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcc-
Confidence 999998764321 1223579999999999864 5678899999999999999999999964221
Q ss_pred CCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 891 GSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 891 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
...+...+..... .. ....+...+.++.+++.+|++.||++|||++|++++-
T Consensus 350 ~~~~~~~i~~~~~----------------~~----~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp 401 (419)
T 3i6u_A 350 QVSLKDQITSGKY----------------NF----IPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHP 401 (419)
T ss_dssp SCCHHHHHHTTCC----------------CC----CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSG
T ss_pred hHHHHHHHhcCCC----------------CC----CchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCCc
Confidence 1122222211110 00 0112233567899999999999999999999999863
No 168
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.9e-38 Score=375.79 Aligned_cols=257 Identities=26% Similarity=0.408 Sum_probs=204.0
Q ss_pred ccccCCcEeEEEEEEC---CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEecccCcc
Q 042568 674 LIGSGRFGHVYKGVLQ---DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPLMSNGS 750 (983)
Q Consensus 674 ~iG~G~~g~Vy~~~~~---~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gs 750 (983)
.||+|+||.||+|.+. ++..||||+++........++|.+|++++++++||||+++++++.. +..++||||+++|+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~ 421 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP 421 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence 6999999999999864 4567999999776555567889999999999999999999999976 56899999999999
Q ss_pred cccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCcccccc
Q 042568 751 LENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGIDESVNC 830 (983)
Q Consensus 751 L~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~~~~~ 830 (983)
|.+++... ...+++..++.++.||++||+|||+++ |+||||||+|||++.++.+||+|||+++.........
T Consensus 422 L~~~l~~~---~~~l~~~~~~~i~~qi~~~L~~LH~~~---iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~-- 493 (613)
T 2ozo_A 422 LHKFLVGK---REEIPVSNVAELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYY-- 493 (613)
T ss_dssp HHHHHTTC---TTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------
T ss_pred HHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---EEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCcee--
Confidence 99998643 356899999999999999999999996 9999999999999999999999999998765322110
Q ss_pred cCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCCCCcHH
Q 042568 831 ANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPHRLDPI 909 (983)
Q Consensus 831 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~ 909 (983)
.......+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... . ++
T Consensus 494 --------~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~--~---------------~~ 548 (613)
T 2ozo_A 494 --------TARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG--P---------------EV 548 (613)
T ss_dssp ----------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCS--H---------------HH
T ss_pred --------eeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCH--H---------------HH
Confidence 11122346789999999998999999999999999999998 9999864211 1 11
Q ss_pred HHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCCC
Q 042568 910 VEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSSP 972 (983)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~ 972 (983)
.+ .+........+ ..++.++.+++.+||+.||++||++.++++.|+.+.......
T Consensus 549 ~~-~i~~~~~~~~p-------~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~~ 603 (613)
T 2ozo_A 549 MA-FIEQGKRMECP-------PECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASK 603 (613)
T ss_dssp HH-HHHTTCCCCCC-------TTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSCS
T ss_pred HH-HHHcCCCCCCC-------CcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhccc
Confidence 11 11111111111 235578999999999999999999999999999987665543
No 169
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=9.1e-38 Score=354.54 Aligned_cols=254 Identities=22% Similarity=0.336 Sum_probs=197.7
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccC-cchhHHHHHHHHHHHhcC--CCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTT-GEITGSFKRECQILKRIR--HRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ 743 (983)
.+|.+.+.||+|+||.||+|...+++.||||++..... ....+.+.+|++++++++ ||||+++++++...+..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 45888999999999999999988899999999976543 334678999999999996 599999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
| +.+++|.+++... ..+++..++.++.||++||+|||+.+ |+||||||+|||++ ++.+||+|||+++.+..
T Consensus 136 E-~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~ 206 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKK----KSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQP 206 (390)
T ss_dssp E-CCSEEHHHHHHHC----SSCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCCGGGEEES-SSCEEECCCSSSCCC--
T ss_pred e-cCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEEE-CCeEEEEecCccccccC
Confidence 9 5678999998753 36889999999999999999999996 99999999999996 58999999999987653
Q ss_pred CcccccccCCCCccccccCccccccccccccccCC-----------CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-----------KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGS 892 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~ 892 (983)
.... ......+||+.|+|||++.+ ..++.++|||||||++|||++|+.||......
T Consensus 207 ~~~~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~-- 273 (390)
T 2zmd_A 207 DTTS-----------VVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ-- 273 (390)
T ss_dssp ------------------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCH--
T ss_pred CCcc-----------ccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHH--
Confidence 2211 11223579999999999865 46889999999999999999999998642110
Q ss_pred chHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 893 SLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 893 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
. ..+...+........+. ....++.+++.+||+.||++|||+.|++++-.
T Consensus 274 --~------------~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~ 323 (390)
T 2zmd_A 274 --I------------SKLHAIIDPNHEIEFPD-------IPEKDLQDVLKCCLKRDPKQRISIPELLAHPY 323 (390)
T ss_dssp --H------------HHHHHHHCTTSCCCCCC-------CSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred --H------------HHHHHHhCccccCCCCc-------cchHHHHHHHHHHcccChhhCCCHHHHhhCcC
Confidence 0 01111111111111111 12357889999999999999999999998643
No 170
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=1.2e-37 Score=346.00 Aligned_cols=263 Identities=27% Similarity=0.396 Sum_probs=206.9
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcE--EEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTR--IAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~--vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 742 (983)
++|...+.||+|+||.||+|+.. ++.. ||||.++........+++.+|+++++++ +||||+++++++...+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 56888999999999999999964 5554 4999987655555567899999999999 899999999999999999999
Q ss_pred EecccCccccccccccc------------CcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCE
Q 042568 743 LPLMSNGSLENHLYPSH------------GLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTA 810 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~------------~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~ 810 (983)
|||+++|+|.+++.... .....+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~~ 181 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVA 181 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCE
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCccceEEEcCCCeE
Confidence 99999999999987543 22346999999999999999999999996 9999999999999999999
Q ss_pred EEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccC
Q 042568 811 LVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFH 889 (983)
Q Consensus 811 kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~ 889 (983)
||+|||+++..... .......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||....
T Consensus 182 kL~Dfg~~~~~~~~--------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~- 246 (327)
T 1fvr_A 182 KIADFGLSRGQEVY--------------VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT- 246 (327)
T ss_dssp EECCTTCEESSCEE--------------CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC-
T ss_pred EEcccCcCcccccc--------------ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc-
Confidence 99999998743211 11122357889999999988889999999999999999998 999985321
Q ss_pred CCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 890 DGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 890 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
..+. .+ .+........+ ..++.++.+++.+|++.||++|||++|++++|+++.+..
T Consensus 247 ----~~~~------------~~-~~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 302 (327)
T 1fvr_A 247 ----CAEL------------YE-KLPQGYRLEKP-------LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEER 302 (327)
T ss_dssp ----HHHH------------HH-HGGGTCCCCCC-------TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred ----HHHH------------HH-HhhcCCCCCCC-------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhh
Confidence 1111 11 11111111111 124467899999999999999999999999999987765
Q ss_pred CC
Q 042568 970 SS 971 (983)
Q Consensus 970 ~~ 971 (983)
..
T Consensus 303 ~~ 304 (327)
T 1fvr_A 303 KT 304 (327)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 171
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.1e-38 Score=354.64 Aligned_cols=264 Identities=28% Similarity=0.394 Sum_probs=198.0
Q ss_pred CCCCCCccccCCcEeEEEEEEC--CC--cEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEec-CCceeEE
Q 042568 668 GFCPSSLIGSGRFGHVYKGVLQ--DN--TRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSK-PDFKALV 742 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~~--~~--~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~lv 742 (983)
.|...++||+|+||.||+|.+. ++ ..||||.++........++|.+|++++++++||||+++++++.. .+..++|
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv 169 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 169 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence 3556788999999999999853 22 35899998765555567889999999999999999999998754 4577999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|||+++|+|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 170 ~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~ 243 (373)
T 3c1x_A 170 LPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMY 243 (373)
T ss_dssp EECCTTCBHHHHHHCT---TCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EECCCCCCHHHHHhhc---ccCCCHHHHHHHHHHHHHHHHHHHHCC---EecCccchheEEECCCCCEEEeecccccccc
Confidence 9999999999999643 345889999999999999999999996 9999999999999999999999999998664
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhh
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~ 901 (983)
...... ........+|+.|+|||.+.+..++.++||||||+++|||++ |..||.... .......+..
T Consensus 244 ~~~~~~---------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~--~~~~~~~~~~- 311 (373)
T 3c1x_A 244 DKEFDS---------VHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN--TFDITVYLLQ- 311 (373)
T ss_dssp -----------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC--SSCHHHHHHT-
T ss_pred cccccc---------ccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCC--HHHHHHHHHc-
Confidence 322110 011122457889999999999999999999999999999999 666765321 1111111111
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCC
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSS 971 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~ 971 (983)
. .....+ ..++.++.+++.+||+.||++|||++|++++|+++......
T Consensus 312 --------------~-~~~~~p-------~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~ 359 (373)
T 3c1x_A 312 --------------G-RRLLQP-------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 359 (373)
T ss_dssp --------------T-CCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCS
T ss_pred --------------C-CCCCCC-------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccc
Confidence 1 110011 12456789999999999999999999999999999766543
No 172
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=1.2e-37 Score=345.92 Aligned_cols=264 Identities=25% Similarity=0.369 Sum_probs=206.7
Q ss_pred hCCCCCCCccccCCcEeEEEEEE------CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCce
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL------QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFK 739 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~------~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 739 (983)
.++|...+.||+|+||.||+|++ .+++.||||.+..........++.+|+.++++++||||+++++++......
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 35788899999999999999984 246789999997655555567899999999999999999999999999999
Q ss_pred eEEEecccCcccccccccccCc---CCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC---CCCEEEc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGL---SHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE---DLTALVA 813 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~---~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~---~~~~kl~ 813 (983)
++||||+++++|.+++...... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC---eecCcCCHhHEEEecCCCcceEEEC
Confidence 9999999999999998764321 245899999999999999999999996 999999999999984 4569999
Q ss_pred cccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCC
Q 042568 814 DFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGS 892 (983)
Q Consensus 814 Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~ 892 (983)
|||+++........ .......||+.|+|||.+.+..++.++||||||+++|||++ |+.||....
T Consensus 186 Dfg~~~~~~~~~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~---- 250 (327)
T 2yfx_A 186 DFGMARDIYRASYY-----------RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS---- 250 (327)
T ss_dssp CCHHHHHHHC-----------------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC----
T ss_pred cccccccccccccc-----------ccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcC----
Confidence 99999865432211 11223468999999999988899999999999999999998 999985321
Q ss_pred chHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 893 SLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 893 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
... ..+. +........+ ..++..+.+++.+||+.||++||++.|++++|+.+.+.
T Consensus 251 -~~~------------~~~~-~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 251 -NQE------------VLEF-VTSGGRMDPP-------KNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp -HHH------------HHHH-HHTTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -HHH------------HHHH-HhcCCCCCCC-------CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 111 1111 1111111111 12456789999999999999999999999999988643
No 173
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=1.8e-37 Score=339.32 Aligned_cols=279 Identities=21% Similarity=0.313 Sum_probs=213.9
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEE-ecCCceeEEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITIC-SKPDFKALVL 743 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lv~ 743 (983)
.++|...+.||+|+||.||+|+. .+++.||||++..... .+++.+|+++++.++|++++..+.++ ...+..++||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK---HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS---CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc---hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEE
Confidence 46788999999999999999996 5788999999865443 35689999999999998877766665 5667779999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe---CCCCCEEEcccccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL---DEDLTALVADFGIAKL 820 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl---~~~~~~kl~Dfgla~~ 820 (983)
||+ +++|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||++ +.++.+||+|||+++.
T Consensus 85 e~~-~~~L~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~ 157 (296)
T 3uzp_A 85 ELL-GPSLEDLFNFC---SRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK 157 (296)
T ss_dssp ECC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred Eec-CCCHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHeEEecCCCCCeEEEeeCCCccc
Confidence 999 89999998643 346999999999999999999999996 9999999999999 4889999999999987
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCC-CchHHHHH
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDG-SSLHEWVK 899 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~-~~l~~~~~ 899 (983)
........... ........||+.|+|||.+.+..++.++||||||+++|||++|+.||....... .....
T Consensus 158 ~~~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~--- 228 (296)
T 3uzp_A 158 YRDARTHQHIP------YRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYE--- 228 (296)
T ss_dssp CBCTTTCCBCC------CCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHH---
T ss_pred ccccccccccc------cccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhh---
Confidence 76443221100 011234579999999999999999999999999999999999999997532211 11111
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCCC-chhHHH
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSSP-SSLIEE 978 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~-~~~~~~ 978 (983)
.+....... . . ......++.++.+++.+|++.||++|||++++++.|+++.+....+ .+..+|
T Consensus 229 --------~~~~~~~~~-~---~----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~~~~~~dw 292 (296)
T 3uzp_A 229 --------RISEKKMST-P---I----EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDW 292 (296)
T ss_dssp --------HHHHHHHHS-C---H----HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTCCSSCCCGG
T ss_pred --------hhcccccCC-c---h----HHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCCcccccccc
Confidence 011111100 0 0 0001124567999999999999999999999999999998776553 333444
Q ss_pred h
Q 042568 979 A 979 (983)
Q Consensus 979 ~ 979 (983)
.
T Consensus 293 ~ 293 (296)
T 3uzp_A 293 N 293 (296)
T ss_dssp G
T ss_pred c
Confidence 4
No 174
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=7.5e-38 Score=346.49 Aligned_cols=253 Identities=21% Similarity=0.279 Sum_probs=205.0
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcc-----hhHHHHHHHHHHHhcCCCCccceeeEEecCCce
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGE-----ITGSFKRECQILKRIRHRNLIRIITICSKPDFK 739 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 739 (983)
.++|.+.+.||+|+||.||+|... +++.||||.++...... ..+.+.+|++++++++||||+++++++...+..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 356888999999999999999975 68899999987654321 357899999999999999999999999999999
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC----CEEEccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL----TALVADF 815 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~----~~kl~Df 815 (983)
++||||+++++|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++ .+||+||
T Consensus 91 ~lv~e~~~~~~L~~~l~~----~~~~~~~~~~~i~~qi~~aL~~lH~~~---ivH~dikp~NIl~~~~~~~~~~~kl~Df 163 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQ----KESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDF 163 (321)
T ss_dssp EEEECCCCSCBHHHHHHT----CSCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCC
T ss_pred EEEEEcCCCCcHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChHHEEEecCCCCcCCEEEccC
Confidence 999999999999999864 345899999999999999999999996 99999999999999888 7999999
Q ss_pred cccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchH
Q 042568 816 GIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLH 895 (983)
Q Consensus 816 gla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~ 895 (983)
|+++....... .....||+.|+|||.+.+..++.++||||||+++|+|++|+.||... ...
T Consensus 164 g~~~~~~~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~ 224 (321)
T 2a2a_A 164 GLAHEIEDGVE--------------FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TKQ 224 (321)
T ss_dssp TTCEECCTTCC--------------CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SHH
T ss_pred ccceecCcccc--------------ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC-----CHH
Confidence 99986653211 12246999999999999999999999999999999999999998532 111
Q ss_pred HHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 896 EWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
+.. ......... .+ ...+...+..+.+++.+|++.||++|||+.|++++
T Consensus 225 ~~~------------~~i~~~~~~--~~---~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h 273 (321)
T 2a2a_A 225 ETL------------ANITSVSYD--FD---EEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (321)
T ss_dssp HHH------------HHHHTTCCC--CC---HHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred HHH------------HHHHhcccc--cC---hhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 111 111110000 00 01112345678999999999999999999999975
No 175
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.5e-38 Score=352.38 Aligned_cols=269 Identities=20% Similarity=0.269 Sum_probs=199.1
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-chhHHHHHHHHHHHhcCCCCccceeeEEecCC------
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-EITGSFKRECQILKRIRHRNLIRIITICSKPD------ 737 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 737 (983)
.++|...+.||+|+||.||+|... +|+.||||++...... ...+++.+|++++++++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 467888999999999999999964 6899999998654332 34577899999999999999999999997653
Q ss_pred ceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccc
Q 042568 738 FKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGI 817 (983)
Q Consensus 738 ~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgl 817 (983)
..++||||+ +++|.+++.. ..+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~-----~~l~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~ 174 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKH-----EKLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGL 174 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTT
T ss_pred eEEEEEecC-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCHHHEEEcCCCCEEEEeeec
Confidence 459999999 7899998863 45899999999999999999999996 99999999999999999999999999
Q ss_pred cccccCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHH
Q 042568 818 AKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHE 896 (983)
Q Consensus 818 a~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~ 896 (983)
++..... .....||+.|+|||.+.+ ..++.++||||+||++|||++|+.||..... ...+..
T Consensus 175 a~~~~~~----------------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~l~~ 237 (367)
T 1cm8_A 175 ARQADSE----------------MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDH-LDQLKE 237 (367)
T ss_dssp CEECCSS----------------CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHH
T ss_pred ccccccc----------------cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHH
Confidence 9865421 122478999999999887 6789999999999999999999999864211 011111
Q ss_pred HHHhhCCCC-------CcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 897 WVKRHYPHR-------LDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 897 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.+....... ........+.... ...+......+.....++.+++.+|++.||++|||++|+++|
T Consensus 238 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h 308 (367)
T 1cm8_A 238 IMKVTGTPPAEFVQRLQSDEAKNYMKGLP-ELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH 308 (367)
T ss_dssp HHHHHCCCCHHHHHTCSCHHHHHHHHHSC-CCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHHhcCCCCHHHHHHhhhHHHHHHHHhCC-CCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence 111111100 0011111111111 111111222234456789999999999999999999999985
No 176
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=7.6e-38 Score=338.79 Aligned_cols=254 Identities=25% Similarity=0.295 Sum_probs=204.9
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|.+.+.||+|+||.||+|... ++..||+|++...... ..+++.+|++++++++||||+++++++...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVE-DVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME 86 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCS-CHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccc-hHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence 456888999999999999999976 4678999998765433 46789999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe---CCCCCEEEccccccccc
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL---DEDLTALVADFGIAKLV 821 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl---~~~~~~kl~Dfgla~~~ 821 (983)
|+++++|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||++ +.++.+||+|||++...
T Consensus 87 ~~~~~~L~~~~~~----~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~ 159 (277)
T 3f3z_A 87 LCTGGELFERVVH----KRVFRESDAARIMKDVLSAVAYCHKLN---VAHRDLKPENFLFLTDSPDSPLKLIDFGLAARF 159 (277)
T ss_dssp CCCSCBHHHHHHH----HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred ccCCCcHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEecCCCCCcEEEEecccceec
Confidence 9999999988865 345899999999999999999999996 9999999999999 78899999999999876
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
..... .....||+.|+|||.+.+. ++.++||||+|+++|||++|+.||..... .
T Consensus 160 ~~~~~--------------~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~------ 213 (277)
T 3f3z_A 160 KPGKM--------------MRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTD-----S------ 213 (277)
T ss_dssp CTTSC--------------BCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSH-----H------
T ss_pred cCccc--------------hhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCH-----H------
Confidence 53221 1224699999999998765 89999999999999999999999864210 0
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGR 964 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 964 (983)
+........... .+ ...+...+.++.+++.+|++.||++|||+.|++++-.-
T Consensus 214 ------~~~~~~~~~~~~--~~---~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~ 265 (277)
T 3f3z_A 214 ------EVMLKIREGTFT--FP---EKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWF 265 (277)
T ss_dssp ------HHHHHHHHCCCC--CC---HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHH
T ss_pred ------HHHHHHHhCCCC--CC---chhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHH
Confidence 111111111110 01 11122345788999999999999999999999986543
No 177
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=3.6e-38 Score=350.11 Aligned_cols=272 Identities=25% Similarity=0.288 Sum_probs=209.2
Q ss_pred CCCCCCCccccCCcEeEEEEEE-----CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEe--cCCce
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-----QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICS--KPDFK 739 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-----~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~ 739 (983)
++|...+.||+|+||.||+|++ .+++.||||++.... ....+.+.+|++++++++||||+++++++. .....
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG-PDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC-HHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 5688899999999999999984 357889999986543 234577999999999999999999999886 44568
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
++||||+++++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++
T Consensus 102 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~ 175 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQRH---RARLDASRLLLYSSQICKGMEYLGSRR---CVHRDLAARNILVESEAHVKIADFGLAK 175 (327)
T ss_dssp EEEEECCTTCBHHHHHHHH---GGGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCGGGCE
T ss_pred EEEEeecCCCCHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChhhEEECCCCCEEEcccccce
Confidence 8999999999999998753 235899999999999999999999996 9999999999999999999999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
........ ........||+.|+|||.+.+..++.++||||||+++|+|++|+.||..... ....
T Consensus 176 ~~~~~~~~----------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~------~~~~ 239 (327)
T 3lxl_A 176 LLPLDKDY----------YVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSA------EFLR 239 (327)
T ss_dssp ECCTTCSE----------EECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH------HHHH
T ss_pred ecccCCcc----------ceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccc------hhhh
Confidence 76543221 1122334688999999999988899999999999999999999999753211 1111
Q ss_pred hhCCCC-C--cHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 900 RHYPHR-L--DPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 900 ~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
...... . .......+........ ...++.++.+++.+|++.||++|||++|++++|+.+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 304 (327)
T 3lxl_A 240 MMGCERDVPALSRLLELLEEGQRLPA-------PPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSG 304 (327)
T ss_dssp HCC----CCHHHHHHHHHHTTCCCCC-------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC---
T ss_pred hcccccccccHHHHHHHhhcccCCCC-------CCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence 111011 0 0111111111111111 123557889999999999999999999999999988543
No 178
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=352.27 Aligned_cols=275 Identities=21% Similarity=0.258 Sum_probs=197.2
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
++|...+.||+|+||.||+|... +++.||||++...........+.+|++++++++||||+++++++...+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 46888999999999999999976 78899999997654443344566899999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
++ |+|.+++... ...+++..++.++.|++.||+|||+.+ |+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~-~~l~~~~~~~---~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~ 154 (324)
T 3mtl_A 82 LD-KDLKQYLDDC---GNIINMHNVKLFLFQLLRGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLARAKSIPT 154 (324)
T ss_dssp CS-EEHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCCGGGEEECTTCCEEECSSSEEECC----
T ss_pred cc-cCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCcCHHHEEECCCCCEEEccCcccccccCCc
Confidence 98 5888887653 346899999999999999999999996 9999999999999999999999999998654221
Q ss_pred ccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC--
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY-- 902 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~-- 902 (983)
.......||+.|+|||.+.+ ..++.++||||+||++|||++|+.||..... ...+..+....-
T Consensus 155 -------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~~~i~~~~~~~ 220 (324)
T 3mtl_A 155 -------------KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTV-EEQLHFIFRILGTP 220 (324)
T ss_dssp ---------------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCCC
T ss_pred -------------cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCC
Confidence 11123468999999999877 5689999999999999999999999864211 011111111100
Q ss_pred -CCCCcHHHH-HHHh-hcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 903 -PHRLDPIVE-KAIA-KYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 903 -~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
+........ .... ...+................++.+++.+|++.||++|||++|++++=
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp 283 (324)
T 3mtl_A 221 TEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHP 283 (324)
T ss_dssp CTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSG
T ss_pred ChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcCh
Confidence 000000000 0000 00000000000111123456789999999999999999999999853
No 179
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=2.6e-38 Score=344.76 Aligned_cols=255 Identities=22% Similarity=0.362 Sum_probs=200.8
Q ss_pred CCCCCCCccccCCcEeEEEEEECC-C-------cEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCc
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQD-N-------TRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDF 738 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~-~-------~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 738 (983)
++|...+.||+|+||.||+|.... + ..||+|++..... ...+++.+|++++++++||||+++++++...+.
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHR-NYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGG-GGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccH-HHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 467788999999999999998653 3 4699999865433 346789999999999999999999999999999
Q ss_pred eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCC--------E
Q 042568 739 KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLT--------A 810 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~--------~ 810 (983)
.++||||+++|+|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++. +
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~ 160 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKN---KNCINILWKLEVAKQLAAAMHFLEENT---LIHGNVCAKNILLIREEDRKTGNPPFI 160 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHT---GGGCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEEECCBGGGTBCCEE
T ss_pred CEEEEECCCCCCHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHhhCC---eECCCcCcceEEEecCCccccccccee
Confidence 99999999999999999753 234899999999999999999999996 999999999999998887 9
Q ss_pred EEccccccccccCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccC
Q 042568 811 LVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFH 889 (983)
Q Consensus 811 kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~ 889 (983)
||+|||.+...... ....||+.|+|||.+.+ ..++.++||||||+++|||++|..|+....
T Consensus 161 kl~Dfg~~~~~~~~-----------------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~- 222 (289)
T 4fvq_A 161 KLSDPGISITVLPK-----------------DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSAL- 222 (289)
T ss_dssp EECCCCSCTTTSCH-----------------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTS-
T ss_pred eeccCcccccccCc-----------------cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcccc-
Confidence 99999998754321 12458899999999987 778999999999999999999665543211
Q ss_pred CCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 890 DGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 890 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
.... ......... ..+. ..+.++.+++.+|++.||++|||++|++++|+++....
T Consensus 223 ---~~~~-------------~~~~~~~~~--~~~~-------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~ 277 (289)
T 4fvq_A 223 ---DSQR-------------KLQFYEDRH--QLPA-------PKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPD 277 (289)
T ss_dssp ---CHHH-------------HHHHHHTTC--CCCC-------CSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC---
T ss_pred ---chHH-------------HHHHhhccC--CCCC-------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCC
Confidence 0000 011111111 1111 12345789999999999999999999999999886654
Q ss_pred CC
Q 042568 970 SS 971 (983)
Q Consensus 970 ~~ 971 (983)
..
T Consensus 278 ~~ 279 (289)
T 4fvq_A 278 LV 279 (289)
T ss_dssp --
T ss_pred CC
Confidence 44
No 180
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-38 Score=353.66 Aligned_cols=273 Identities=16% Similarity=0.211 Sum_probs=210.0
Q ss_pred CCCCCCCccccCCcEeEEEEEECC---------CcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccc---------
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQD---------NTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIR--------- 728 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~---------~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------- 728 (983)
++|...+.||+|+||.||+|.... ++.||||++... +.+.+|++++++++||||++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~------~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD------GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT------STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc------chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 678899999999999999999763 788999998643 46889999999999999988
Q ss_pred ------eeeEEec-CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCC
Q 042568 729 ------IITICSK-PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSN 801 (983)
Q Consensus 729 ------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~N 801 (983)
+++++.. ....++||||+ +++|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+|
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~N 189 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSP--KHVLSERSVLQVACRLLDALEFLHENE---YVHGNVTAEN 189 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCGGG
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCC--cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHH
Confidence 6677765 67889999999 999999997542 356999999999999999999999996 9999999999
Q ss_pred eEeCCCC--CEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh
Q 042568 802 ILLDEDL--TALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT 879 (983)
Q Consensus 802 iLl~~~~--~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt 879 (983)
|+++.++ .+||+|||+++.+......... .........||+.|+|||.+.+..++.++||||||+++|||++
T Consensus 190 Il~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~ 263 (352)
T 2jii_A 190 IFVDPEDQSQVTLAGYGFAFRYCPSGKHVAY------VEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLY 263 (352)
T ss_dssp EEEETTEEEEEEECCGGGCBCSSGGGCCCCC------CTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCceEEEecCcceeeccCCCccccc------cccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHh
Confidence 9999998 9999999999877543322110 0112233579999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 042568 880 GRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVA 959 (983)
Q Consensus 880 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl 959 (983)
|+.||.........+.... ... ...... ... ....+...+.++.+++.+|++.||++|||++|++
T Consensus 264 g~~pf~~~~~~~~~~~~~~------------~~~-~~~~~~-~~~-~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~ 328 (352)
T 2jii_A 264 GFLPWTNCLPNTEDIMKQK------------QKF-VDKPGP-FVG-PCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLR 328 (352)
T ss_dssp SCCTTGGGTTCHHHHHHHH------------HHH-HHSCCC-EEC-TTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHH
T ss_pred CCCCcccCCcCHHHHHHHH------------Hhc-cCChhh-hhh-hccccCCCcHHHHHHHHHHHhCChhhCCCHHHHH
Confidence 9999975322211111111 110 110000 000 0001123457899999999999999999999999
Q ss_pred HHHHHhHhhcCCC
Q 042568 960 HEMGRLKQYLSSP 972 (983)
Q Consensus 960 ~~L~~~~~~~~~~ 972 (983)
+.|+++.+.....
T Consensus 329 ~~L~~~~~~~~~~ 341 (352)
T 2jii_A 329 NNLEALLQDLRVS 341 (352)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCC
Confidence 9999998776543
No 181
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=1e-37 Score=344.76 Aligned_cols=275 Identities=22% Similarity=0.302 Sum_probs=199.8
Q ss_pred CCCCC-CCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCP-SSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~-~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|.+ .++||+|+||.||+|.. .+++.||||++..... ....++.+|++++.++ +||||+++++++...+..++||
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~ 90 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPG-HIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF 90 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSS-CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcc-hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence 45666 47899999999999995 4789999999976533 3467899999999995 7999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCC---EEEcccccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLT---ALVADFGIAKL 820 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~---~kl~Dfgla~~ 820 (983)
||+++|+|.+++... ..+++..++.++.|+++||+|||+++ |+||||||+||+++.++. +||+|||+++.
T Consensus 91 e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~ 163 (316)
T 2ac3_A 91 EKMRGGSILSHIHKR----RHFNELEASVVVQDVASALDFLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSG 163 (316)
T ss_dssp ECCTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESCSSSSCSEEECCTTCCC-
T ss_pred EcCCCCcHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEEccCCCcCceEEEEccCccc
Confidence 999999999998753 45899999999999999999999996 999999999999998776 99999999986
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccCC-----CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchH
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-----KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLH 895 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~ 895 (983)
.......... .........||+.|+|||.+.+ ..++.++||||+||++|||++|+.||...........
T Consensus 164 ~~~~~~~~~~------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~ 237 (316)
T 2ac3_A 164 IKLNGDCSPI------STPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWD 237 (316)
T ss_dssp ------------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC-
T ss_pred cccCCccccc------cccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccccccccc
Confidence 5432211000 0011223469999999999875 5578999999999999999999999975432221110
Q ss_pred HHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 896 EWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
. ..........+...+..... ..+ ...+...+.++.+++.+|++.||++|||++|++++-
T Consensus 238 ~---~~~~~~~~~~~~~~i~~~~~-~~~---~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp 297 (316)
T 2ac3_A 238 R---GEACPACQNMLFESIQEGKY-EFP---DKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHP 297 (316)
T ss_dssp ------CCHHHHHHHHHHHHHCCC-CCC---HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHST
T ss_pred c---cccchhHHHHHHHHHhccCc-ccC---chhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcCh
Confidence 0 00000000111111111111 111 111223567899999999999999999999999863
No 182
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=3.6e-37 Score=338.17 Aligned_cols=253 Identities=25% Similarity=0.394 Sum_probs=208.6
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
+.|...+.||+|+||.||+|... +++.||||+++........+.+.+|++++++++||||+++++++......++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 101 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY 101 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence 46888899999999999999964 68899999998766555678899999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
+++++|.+++.. ..+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||++.......
T Consensus 102 ~~~~~L~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~ 173 (303)
T 3a7i_A 102 LGGGSALDLLEP-----GPLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ 173 (303)
T ss_dssp CTTEEHHHHHTT-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECBTTB
T ss_pred CCCCcHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChheEEECCCCCEEEeecccceecCccc
Confidence 999999998863 46899999999999999999999996 9999999999999999999999999998765322
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHR 905 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~ 905 (983)
. ......||+.|+|||.+.+..++.++||||||+++|+|++|+.||..... ..
T Consensus 174 ~-------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~--------- 226 (303)
T 3a7i_A 174 I-------------KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHP-----MK--------- 226 (303)
T ss_dssp C-------------CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HH---------
T ss_pred c-------------ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCH-----HH---------
Confidence 1 11234689999999999999999999999999999999999999863210 00
Q ss_pred CcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 042568 906 LDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRL 965 (983)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 965 (983)
.. ..+........+ ...+..+.+++.+|++.||++|||+.|++++..-.
T Consensus 227 ---~~-~~~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~ 275 (303)
T 3a7i_A 227 ---VL-FLIPKNNPPTLE-------GNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFIL 275 (303)
T ss_dssp ---HH-HHHHHSCCCCCC-------SSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCHHHH
T ss_pred ---HH-HHhhcCCCCCCc-------cccCHHHHHHHHHHcCCChhhCcCHHHHhhChhhh
Confidence 00 111111111111 12346789999999999999999999999876543
No 183
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=1.2e-37 Score=347.72 Aligned_cols=250 Identities=23% Similarity=0.310 Sum_probs=200.2
Q ss_pred CCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
+.|...+.||+|+||.||+|.. .+++.||||++..... .+..+++.+|++++++++||||+++++++...+..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 3577889999999999999996 5788999999975432 223567899999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||++ |++.+++... ...+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++....
T Consensus 134 e~~~-g~l~~~l~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~ 206 (348)
T 1u5q_A 134 EYCL-GSASDLLEVH---KKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAP 206 (348)
T ss_dssp ECCS-EEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred ecCC-CCHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEeeccCceecCC
Confidence 9997 5777776533 356899999999999999999999996 99999999999999999999999999976542
Q ss_pred CcccccccCCCCccccccCccccccccccccccC---CCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHh
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM---GKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~ 900 (983)
. ....||+.|+|||++. +..++.++|||||||++|||++|+.||.... . .
T Consensus 207 ~-----------------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~----~-~----- 259 (348)
T 1u5q_A 207 A-----------------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN----A-M----- 259 (348)
T ss_dssp B-----------------CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----H-H-----
T ss_pred C-----------------CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC----h-H-----
Confidence 1 1246999999999884 5678999999999999999999999985321 0 0
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGR 964 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 964 (983)
...........+. ... ...+..+.+++.+||+.||++|||++|++++-.-
T Consensus 260 -------~~~~~~~~~~~~~----~~~---~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~ 309 (348)
T 1u5q_A 260 -------SALYHIAQNESPA----LQS---GHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFV 309 (348)
T ss_dssp -------HHHHHHHHSCCCC----CCC---TTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHH
T ss_pred -------HHHHHHHhcCCCC----CCC---CCCCHHHHHHHHHHcccChhhCcCHHHHhhChhh
Confidence 0111111111111 111 1234568899999999999999999999987553
No 184
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=361.99 Aligned_cols=348 Identities=22% Similarity=0.267 Sum_probs=262.5
Q ss_pred ceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCC
Q 042568 204 RFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSN 283 (983)
Q Consensus 204 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~ 283 (983)
+.++.++++++ .+|..+. ++|++|+|++|+++ .++...+..+++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L------------------------------- 58 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHL------------------------------- 58 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTC-------------------------------
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCC-------------------------------
Confidence 45666666666 4454442 46667777777766 3433444445444
Q ss_pred ccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEee
Q 042568 284 FQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLS 363 (983)
Q Consensus 284 L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 363 (983)
++|+|++|++++..|..+..+ ++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..+..+++|++|+|+
T Consensus 59 -~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 59 -EELELNENIVSAVEPGAFNNL-FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136 (477)
T ss_dssp -CEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred -CEEECCCCccCEeChhhhhCC-ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence 455555555555555555555 356677777776665555567777888888888888877777777888888888888
Q ss_pred CCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcC
Q 042568 364 NNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGII 443 (983)
Q Consensus 364 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 443 (983)
+|.+.+..|..|..+++|+.|+|++|++++..+..|.++++|+.|++++|.+++..+..|..+++|+.|++++|.+.+.+
T Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE
T ss_pred CCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc
Confidence 88888777778888888888888888888776677888888888888888888777777888888888888888887777
Q ss_pred CccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCC
Q 042568 444 PSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQL 523 (983)
Q Consensus 444 p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 523 (983)
|..+....+|+. |++++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+
T Consensus 217 ~~~~~~~~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 217 TPNCLYGLNLTS-LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp CTTTTTTCCCSE-EEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred CcccccCccccE-EECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 777766678885 8888888886655778888999999999999987778888999999999999999998889999999
Q ss_pred CCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCCCCCCcccccccccCCcCccCCCC
Q 042568 524 PYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISNKGAFSSLTIASFQGNDGLCGEIK 589 (983)
Q Consensus 524 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~N~~lc~~~~ 589 (983)
++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+....+.......+.++...|+.|.
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 999999999999997777788899999999999999987654322222233456778888887763
No 185
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=9.6e-38 Score=365.06 Aligned_cols=255 Identities=25% Similarity=0.337 Sum_probs=207.1
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
.++|...++||+|+||.||+|... +|+.||||++.... .......+.+|++++++++||||+++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 356888899999999999999975 78999999996542 122356788999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|||+++|+|.+++.... ...+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+|+...
T Consensus 263 mEy~~gg~L~~~l~~~~--~~~l~e~~~~~i~~qIl~aL~yLH~~g---IvHrDLKPeNILld~~g~vKL~DFGla~~~~ 337 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMG--QAGFPEARAVFYAAEICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGLAVHVP 337 (576)
T ss_dssp ECCCCSCBHHHHHHSSS--SCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEcCCCCcHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCchheEEEeCCCCeEEEecccceecc
Confidence 99999999999887543 345899999999999999999999996 9999999999999999999999999998764
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.... ....+||+.|+|||++.+..++.++||||+||++|||++|+.||....... .
T Consensus 338 ~~~~--------------~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~-~--------- 393 (576)
T 2acx_A 338 EGQT--------------IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI-K--------- 393 (576)
T ss_dssp TTCC--------------EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC-C---------
T ss_pred cCcc--------------ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccch-h---------
Confidence 3211 112479999999999999999999999999999999999999997432111 1
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRP-----SMLDVAHE 961 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~evl~~ 961 (983)
...+...+..... ..+ ...+.++.+++.+|++.||++|| +++|+++|
T Consensus 394 ----~~~i~~~i~~~~~-~~p-------~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H 445 (576)
T 2acx_A 394 ----REEVERLVKEVPE-EYS-------ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEH 445 (576)
T ss_dssp ----HHHHHHHHHHCCC-CCC-------TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred ----HHHHHHHhhcccc-cCC-------ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence 1112222222111 111 12456789999999999999999 78999875
No 186
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=6.7e-38 Score=350.40 Aligned_cols=272 Identities=16% Similarity=0.177 Sum_probs=201.6
Q ss_pred CCCCCCCccccCCcEeEEEEEEC----CCcEEEEEEeecccCcc----------hhHHHHHHHHHHHhcCCCCccceeeE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ----DNTRIAVKVLDLTTTGE----------ITGSFKRECQILKRIRHRNLIRIITI 732 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~----~~~~vAvK~~~~~~~~~----------~~~~~~~E~~~l~~l~h~niv~l~~~ 732 (983)
++|...+.||+|+||.||+|... ++..||||++....... ....+.+|+..++.++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 57888999999999999999975 56789999986553210 12346788899999999999999999
Q ss_pred Eec----CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC
Q 042568 733 CSK----PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL 808 (983)
Q Consensus 733 ~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~ 808 (983)
+.. ....++||||+ +++|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+||+++.++
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~ 188 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQN----GTFKKSTVLQLGIRMLDVLEYIHENE---YVHGDIKAANLLLGYKN 188 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGG----GBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEESSS
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCcCHHHEEEccCC
Confidence 977 67889999999 99999998753 26899999999999999999999996 99999999999998877
Q ss_pred --CEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCc
Q 042568 809 --TALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDV 886 (983)
Q Consensus 809 --~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~ 886 (983)
.+||+|||+|+.+........ ..........||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 189 ~~~~kL~Dfg~a~~~~~~~~~~~------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~ 262 (345)
T 2v62_A 189 PDQVYLADYGLSYRYCPNGNHKQ------YQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQ 262 (345)
T ss_dssp TTSEEECCCTTCEESSGGGCCCC------CCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGG
T ss_pred CCcEEEEeCCCceeccccccccc------chhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence 999999999987754322110 001112335799999999999999999999999999999999999999964
Q ss_pred ccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhH
Q 042568 887 LFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLK 966 (983)
Q Consensus 887 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~ 966 (983)
...+.......... ....+....... .+ ...++.++.+++.+||+.||++||+++++++.|+.+.
T Consensus 263 ~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~----------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 263 NLKDPVAVQTAKTN-LLDELPQSVLKW----AP----------SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp GTTCHHHHHHHHHH-HHHTTTHHHHHH----SC----------TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred cccccHHHHHHHHh-hcccccHHHHhh----cc----------ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence 22221111111111 000001111100 00 0024568999999999999999999999999998875
Q ss_pred h
Q 042568 967 Q 967 (983)
Q Consensus 967 ~ 967 (983)
.
T Consensus 328 ~ 328 (345)
T 2v62_A 328 I 328 (345)
T ss_dssp C
T ss_pred C
Confidence 4
No 187
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=6.5e-38 Score=348.84 Aligned_cols=255 Identities=25% Similarity=0.330 Sum_probs=202.6
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeEEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 743 (983)
.++|...+.||+|+||.||+|... +++.||||+++.... ...+|++++.++ +||||+++++++.+.+..++||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR-----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC-----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC-----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 457888999999999999999975 688899999965432 345788999888 7999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCC----CCEEEccccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDED----LTALVADFGIAK 819 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~----~~~kl~Dfgla~ 819 (983)
||+++|+|.+++.. ...+++..+..++.|+++||+|||+.+ |+||||||+||++..+ +.+||+|||+++
T Consensus 96 E~~~gg~L~~~i~~----~~~~~~~~~~~~~~qi~~al~~lH~~g---ivHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~ 168 (342)
T 2qr7_A 96 ELMKGGELLDKILR----QKFFSEREASAVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAK 168 (342)
T ss_dssp CCCCSCBHHHHHHT----CTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSCSGGGEEECCCTTCE
T ss_pred eCCCCCcHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHCC---cEeccCCHHHEEEecCCCCcCeEEEEECCCcc
Confidence 99999999998864 345899999999999999999999996 9999999999998533 359999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
....... ......||+.|+|||.+.+..++.++||||+||++|||++|+.||.... .....+
T Consensus 169 ~~~~~~~-------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~--~~~~~~--- 230 (342)
T 2qr7_A 169 QLRAENG-------------LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGP--DDTPEE--- 230 (342)
T ss_dssp ECBCTTC-------------CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSST--TSCHHH---
T ss_pred cCcCCCC-------------ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCC--cCCHHH---
Confidence 7643221 1123478999999999988888999999999999999999999996421 111111
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGR 964 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 964 (983)
+........... ....|...+.++.+++.+|++.||++||++.|++++-.-
T Consensus 231 ---------~~~~i~~~~~~~-----~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~~ 281 (342)
T 2qr7_A 231 ---------ILARIGSGKFSL-----SGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWI 281 (342)
T ss_dssp ---------HHHHHHHCCCCC-----CSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHH
T ss_pred ---------HHHHHccCCccc-----CccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCCee
Confidence 111111111110 111233456789999999999999999999999987554
No 188
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=1.3e-37 Score=363.47 Aligned_cols=257 Identities=21% Similarity=0.327 Sum_probs=206.9
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|...++||+|+||.||+|+.. +|+.||||++..... ......+.+|++++++++||||+++++++...+..++||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 56888899999999999999975 689999999965432 223567899999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++|+|.+++.........+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++....
T Consensus 265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g---IvHrDLKP~NILl~~~g~vkL~DFGla~~~~~ 341 (543)
T 3c4z_A 265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341 (543)
T ss_dssp CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcC---CcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence 999999999998765433456999999999999999999999996 99999999999999999999999999987643
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
... ......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ....
T Consensus 342 ~~~-------------~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~-~~~~-------- 399 (543)
T 3c4z_A 342 GQT-------------KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEK-VENK-------- 399 (543)
T ss_dssp TCC-------------CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCC-CCHH--------
T ss_pred CCc-------------ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccc-hhHH--------
Confidence 221 112347999999999999999999999999999999999999999643211 1111
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCH-----HHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSM-----LDVAHE 961 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~-----~evl~~ 961 (983)
.+......... ..+ ...+.++.+++.+|++.||++||++ +|+++|
T Consensus 400 ----~~~~~i~~~~~--~~p-------~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~H 449 (543)
T 3c4z_A 400 ----ELKQRVLEQAV--TYP-------DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTH 449 (543)
T ss_dssp ----HHHHHHHHCCC--CCC-------TTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTS
T ss_pred ----HHHHHHhhccc--CCC-------cccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcC
Confidence 11111111111 111 1245678899999999999999965 677753
No 189
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=4.6e-38 Score=347.71 Aligned_cols=273 Identities=21% Similarity=0.257 Sum_probs=208.5
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEe----cCCcee
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICS----KPDFKA 740 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~----~~~~~~ 740 (983)
.++|...+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++||||+++++++. .....+
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 106 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHE-QQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAW 106 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESS-HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCC-HHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeE
Confidence 45788999999999999999996 578999999986543 335678999999999999999999999986 334778
Q ss_pred EEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccc
Q 042568 741 LVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKL 820 (983)
Q Consensus 741 lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~ 820 (983)
+||||+++|+|.+++.........+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++.
T Consensus 107 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~dfg~~~~ 183 (317)
T 2buj_A 107 LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKG---YAHRDLKPTNILLGDEGQPVLMDLGSMNQ 183 (317)
T ss_dssp EEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred EEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCCEEEEecCcchh
Confidence 999999999999998764433567999999999999999999999996 99999999999999999999999999876
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccCCCC---CCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHH
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKR---ASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEW 897 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~ 897 (983)
.......... ...........||+.|+|||.+.+.. ++.++||||||+++|||++|+.||+............
T Consensus 184 ~~~~~~~~~~----~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~ 259 (317)
T 2buj_A 184 ACIHVEGSRQ----ALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALA 259 (317)
T ss_dssp SCEEEESHHH----HHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHH
T ss_pred cccccccccc----cccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHH
Confidence 5421110000 00000112245799999999987654 6889999999999999999999986432222222111
Q ss_pred HHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 898 VKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
+.. ... .+. ....+.++.+++.+|++.||.+|||++|++++|+.+....
T Consensus 260 ~~~----------------~~~--~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~ 308 (317)
T 2buj_A 260 VQN----------------QLS--IPQ-----SPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPA 308 (317)
T ss_dssp HHC----------------C----CCC-----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCC
T ss_pred hhc----------------cCC--CCc-----cccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCC
Confidence 111 000 000 0123467899999999999999999999999999886443
No 190
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=3.7e-38 Score=365.04 Aligned_cols=250 Identities=23% Similarity=0.269 Sum_probs=194.7
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
.++|...++||+|+||.||+|... +++.||||+++... .......+.+|+++++.++||||+++++++...+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 357888999999999999999964 68899999997542 233456788999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhc-cCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHH-HSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~-~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
|||+++|+|.+++.. ...+++..+..++.|+++||+|||+ .+ |+||||||+|||++.++.+||+|||+|+..
T Consensus 227 ~e~~~~~~L~~~l~~----~~~~~~~~~~~~~~qi~~aL~~LH~~~g---iiHrDlkp~NIll~~~~~~kl~DFG~a~~~ 299 (446)
T 4ejn_A 227 MEYANGGELFFHLSR----ERVFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFGLCKEG 299 (446)
T ss_dssp ECCCSSCBHHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHHTC---CCCCCCCGGGEEECSSSCEEECCCCCCCTT
T ss_pred EeeCCCCcHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHhhcCC---EEECCCCHHHEEECCCCCEEEccCCCceec
Confidence 999999999998865 3468999999999999999999998 75 999999999999999999999999999854
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
.... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.... ..
T Consensus 300 ~~~~-------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~-----~~------ 355 (446)
T 4ejn_A 300 IKDG-------------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD-----HE------ 355 (446)
T ss_dssp CC------------------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HH------
T ss_pred cCCC-------------cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCC-----HH------
Confidence 3221 11233579999999999999999999999999999999999999985321 11
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHHH
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRP-----SMLDVAHE 961 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~evl~~ 961 (983)
...+....... ..+ .....++.+++.+|++.||++|| +++|+++|
T Consensus 356 ------~~~~~i~~~~~--~~p-------~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~h 405 (446)
T 4ejn_A 356 ------KLFELILMEEI--RFP-------RTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH 405 (446)
T ss_dssp ------HHHHHHHHCCC--CCC-------TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred ------HHHHHHHhCCC--CCC-------ccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhC
Confidence 11111111111 111 12346789999999999999999 99999975
No 191
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=5.9e-38 Score=339.85 Aligned_cols=250 Identities=26% Similarity=0.431 Sum_probs=183.8
Q ss_pred CCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|.+.+.||+|+||.||+|.. .+++.||||++..... .+..+++.+|++++++++||||+++++++...+..++||
T Consensus 11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (278)
T 3cok_A 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVL 90 (278)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEE
Confidence 5688899999999999999996 4789999999865432 223578999999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||.+.....
T Consensus 91 e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~ 164 (278)
T 3cok_A 91 EMCHNGEMNRYLKNR---VKPFSENEARHFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKM 164 (278)
T ss_dssp ECCTTEEHHHHHHTC---SSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSSCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred ecCCCCcHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEEeecceeeccC
Confidence 999999999998743 356899999999999999999999996 99999999999999999999999999986643
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
... ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||...... .......
T Consensus 165 ~~~-------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~- 225 (278)
T 3cok_A 165 PHE-------------KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK-----NTLNKVV- 225 (278)
T ss_dssp ----------------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC----------CC-
T ss_pred CCC-------------cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHH-----HHHHHHh-
Confidence 211 111246899999999999988999999999999999999999998642111 0000000
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
. .....+ ...+.++.+++.+|++.||++|||++|++++
T Consensus 226 -----------~--~~~~~~-------~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 263 (278)
T 3cok_A 226 -----------L--ADYEMP-------SFLSIEAKDLIHQLLRRNPADRLSLSSVLDH 263 (278)
T ss_dssp -----------S--SCCCCC-------TTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred -----------h--cccCCc-------cccCHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence 0 000011 1234678899999999999999999999875
No 192
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=5.9e-38 Score=353.40 Aligned_cols=266 Identities=23% Similarity=0.334 Sum_probs=208.6
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
++|...+.||+|+||.||+|... +++.||+|++.........+.+.+|++++++++||||+++++++...+..++||||
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 112 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 112 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence 57888999999999999999976 68899999998765555678899999999999999999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhcc-CCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHH-SPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~-~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
+++++|.+++... ..+++..+..++.|+++||+|||+. + |+||||||+||+++.++.+||+|||+++.....
T Consensus 113 ~~~~~L~~~l~~~----~~~~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 185 (360)
T 3eqc_A 113 MDGGSLDQVLKKA----GRIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 185 (360)
T ss_dssp CTTCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH
T ss_pred CCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHhCC---EEcCCccHHHEEECCCCCEEEEECCCCcccccc
Confidence 9999999998753 3589999999999999999999985 5 999999999999999999999999999765321
Q ss_pred cccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHh----
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKR---- 900 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~---- 900 (983)
......||+.|+|||.+.+..++.++||||||+++|||++|+.||..... ..+...+..
T Consensus 186 ---------------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~~~~~~~~ 248 (360)
T 3eqc_A 186 ---------------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDA--KELELMFGCQVEG 248 (360)
T ss_dssp ---------------C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCH--HHHHHHHC-----
T ss_pred ---------------cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHhcccccc
Confidence 11224799999999999999999999999999999999999999864211 111111000
Q ss_pred ----------------------hCC-CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 042568 901 ----------------------HYP-HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLD 957 (983)
Q Consensus 901 ----------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~e 957 (983)
..+ ....+..+......... .+ ....+.++.+++.+|++.||++|||++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~li~~~L~~dP~~Rpt~~e 321 (360)
T 3eqc_A 249 DAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPK-LP------SGVFSLEFQDFVNKCLIKNPAERADLKQ 321 (360)
T ss_dssp -------------------------CCCHHHHHHHHHHSCCCC-CC------TTTSCHHHHHHHHHHHCSSTTTSCCHHH
T ss_pred cCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCC-CC------cccccHHHHHHHHHHhhcChhhCCCHHH
Confidence 000 01112222222221111 11 1123567899999999999999999999
Q ss_pred HHHHHH
Q 042568 958 VAHEMG 963 (983)
Q Consensus 958 vl~~L~ 963 (983)
+++|-.
T Consensus 322 ll~hp~ 327 (360)
T 3eqc_A 322 LMVHAF 327 (360)
T ss_dssp HHTSHH
T ss_pred HhhChH
Confidence 998654
No 193
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.4e-38 Score=348.44 Aligned_cols=245 Identities=27% Similarity=0.371 Sum_probs=202.2
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-------chhHHHHHHHHHHHhcCCCCccceeeEEecC
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-------EITGSFKRECQILKRIRHRNLIRIITICSKP 736 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 736 (983)
..++|...+.||+|+||.||+|... +++.||||+++..... .....+.+|++++++++||||+++++++...
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 3567999999999999999999954 6888999999765321 1345678899999999999999999999999
Q ss_pred CceeEEEecccCc-ccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccc
Q 042568 737 DFKALVLPLMSNG-SLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADF 815 (983)
Q Consensus 737 ~~~~lv~e~~~~g-sL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Df 815 (983)
+..++||||+.+| +|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+||
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~----~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Df 174 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDR----HPRLDEPLASYIFRQLVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDF 174 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHT----CCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCC
T ss_pred CEEEEEEEeCCCCccHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHhCC---eEEeccCHHHEEEcCCCcEEEeec
Confidence 9999999999777 99888864 345899999999999999999999996 999999999999999999999999
Q ss_pred cccccccCCcccccccCCCCccccccCccccccccccccccCCCCC-CccchhHHHHHHHHHHHhCCCCCCcccCCCCch
Q 042568 816 GIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRA-STHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSL 894 (983)
Q Consensus 816 gla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l 894 (983)
|+++....... .....||+.|+|||.+.+..+ +.++||||||+++|||++|+.||......
T Consensus 175 g~a~~~~~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---- 236 (335)
T 3dls_A 175 GSAAYLERGKL--------------FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET---- 236 (335)
T ss_dssp TTCEECCTTCC--------------BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG----
T ss_pred ccceECCCCCc--------------eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH----
Confidence 99987653221 123569999999999988776 78999999999999999999998642110
Q ss_pred HHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 895 HEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
.. ... ..+ ...+.++.+++.+|++.||++|||++|++++-
T Consensus 237 -------~~------------~~~--~~~-------~~~~~~l~~li~~~L~~dP~~Rps~~ell~hp 276 (335)
T 3dls_A 237 -------VE------------AAI--HPP-------YLVSKELMSLVSGLLQPVPERRTTLEKLVTDP 276 (335)
T ss_dssp -------TT------------TCC--CCS-------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHHCT
T ss_pred -------Hh------------hcc--CCC-------cccCHHHHHHHHHHccCChhhCcCHHHHhcCc
Confidence 00 000 001 01346789999999999999999999999873
No 194
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=2e-37 Score=352.78 Aligned_cols=255 Identities=20% Similarity=0.299 Sum_probs=193.8
Q ss_pred CCCCCC-CccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHh-cCCCCccceeeEEec----CCce
Q 042568 667 GGFCPS-SLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKR-IRHRNLIRIITICSK----PDFK 739 (983)
Q Consensus 667 ~~f~~~-~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~----~~~~ 739 (983)
++|... ++||+|+||+||+|... +++.||||++.. ...+.+|++++.+ .+||||+++++++.. ....
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~------~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~ 134 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 134 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc------chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence 345554 68999999999999965 688999999852 2567789998755 489999999998865 5578
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC---CCCEEEcccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE---DLTALVADFG 816 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~---~~~~kl~Dfg 816 (983)
++||||+++|+|.+++.... ...+++..++.|+.|+++||+|||+.+ |+||||||+|||++. ++.+||+|||
T Consensus 135 ~lv~E~~~gg~L~~~l~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~~~kl~DFG 209 (400)
T 1nxk_A 135 LIVMECLDGGELFSRIQDRG--DQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFG 209 (400)
T ss_dssp EEEEECCCSEEHHHHHHCC-----CCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSTTCCEEECCCT
T ss_pred EEEEEeCCCCcHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCcceEEEecCCCCccEEEEecc
Confidence 99999999999999997532 346999999999999999999999986 999999999999997 7899999999
Q ss_pred ccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHH
Q 042568 817 IAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHE 896 (983)
Q Consensus 817 la~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~ 896 (983)
+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.........
T Consensus 210 ~a~~~~~~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~--- 272 (400)
T 1nxk_A 210 FAKETTSHN--------------SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS--- 272 (400)
T ss_dssp TCEECC-------------------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSC---
T ss_pred cccccCCCC--------------ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCcccccc---
Confidence 998654221 112357899999999999999999999999999999999999999643221100
Q ss_pred HHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 042568 897 WVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGR 964 (983)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 964 (983)
............. .+ ...|..++.++.+++.+|++.||++|||+.|++++-.-
T Consensus 273 ----------~~~~~~i~~~~~~--~~---~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~ 325 (400)
T 1nxk_A 273 ----------PGMKTRIRMGQYE--FP---NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWI 325 (400)
T ss_dssp ----------CSHHHHHHHTCCC--CC---TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHH
T ss_pred ----------HHHHHHHHcCccc--CC---CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccc
Confidence 0011111111111 01 11233456789999999999999999999999987553
No 195
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=2.3e-37 Score=358.50 Aligned_cols=272 Identities=21% Similarity=0.214 Sum_probs=197.7
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc-CcchhHHHHHHHHHHHhcCCCCccceeeEEecCC------
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT-TGEITGSFKRECQILKRIRHRNLIRIITICSKPD------ 737 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 737 (983)
.++|...+.||+|+||.||+|... +++.||||++.... .....+++.+|+++++.++||||+++++++....
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 468889999999999999999965 68889999997543 2334678899999999999999999999996553
Q ss_pred ceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccc
Q 042568 738 FKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGI 817 (983)
Q Consensus 738 ~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgl 817 (983)
..++||||++++ +.+.+. ..+++..+..++.|+++||+|||+.+ |+||||||+|||++.++.+||+|||+
T Consensus 141 ~~~lv~E~~~~~-l~~~~~------~~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDlkp~NIll~~~~~~kl~DFG~ 210 (464)
T 3ttj_A 141 DVYLVMELMDAN-LCQVIQ------MELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGL 210 (464)
T ss_dssp EEEEEEECCSEE-HHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCC
T ss_pred eEEEEEeCCCCC-HHHHHh------hcCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChHhEEEeCCCCEEEEEEEe
Confidence 469999999864 544443 24899999999999999999999996 99999999999999999999999999
Q ss_pred cccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHH
Q 042568 818 AKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEW 897 (983)
Q Consensus 818 a~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~ 897 (983)
|+...... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...+...
T Consensus 211 a~~~~~~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~-~~~~~~i 275 (464)
T 3ttj_A 211 ARTAGTSF--------------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY-IDQWNKV 275 (464)
T ss_dssp C-----CC--------------CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHH
T ss_pred eeecCCCc--------------ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHH
Confidence 98654321 12235799999999999999999999999999999999999999863210 0111111
Q ss_pred HHhhCCC------CCcHHHHHHHhhcCCCC---Ccc--------ccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 042568 898 VKRHYPH------RLDPIVEKAIAKYAPQH---MPI--------YYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAH 960 (983)
Q Consensus 898 ~~~~~~~------~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~ 960 (983)
+...-.+ .........+....... .+. ...........++.+++.+|++.||++|||++|+++
T Consensus 276 ~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 276 IEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp HHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 1111100 11111222111111000 000 001111223678999999999999999999999998
Q ss_pred HH
Q 042568 961 EM 962 (983)
Q Consensus 961 ~L 962 (983)
|=
T Consensus 356 Hp 357 (464)
T 3ttj_A 356 HP 357 (464)
T ss_dssp ST
T ss_pred Ch
Confidence 63
No 196
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=2.1e-37 Score=336.70 Aligned_cols=252 Identities=21% Similarity=0.317 Sum_probs=203.8
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEec---------
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSK--------- 735 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--------- 735 (983)
.++|...+.||+|+||.||+|... +++.||||.++... ..+.+|++++++++||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 356888999999999999999976 78999999986542 457789999999999999999998854
Q ss_pred -------CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC
Q 042568 736 -------PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL 808 (983)
Q Consensus 736 -------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~ 808 (983)
....++||||+++|+|.+++.... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~ 159 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRR--GEKLDKVLALELFEQITKGVDYIHSKK---LINRDLKPSNIFLVDTK 159 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHGG--GSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETT
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHEEEcCCC
Confidence 345789999999999999997543 356899999999999999999999996 99999999999999999
Q ss_pred CEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCccc
Q 042568 809 TALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLF 888 (983)
Q Consensus 809 ~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~ 888 (983)
.+||+|||+++....... .....||+.|+|||.+.+..++.++||||||+++|||++|..|+...
T Consensus 160 ~~kl~Dfg~~~~~~~~~~--------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~- 224 (284)
T 2a19_B 160 QVKIGDFGLVTSLKNDGK--------------RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET- 224 (284)
T ss_dssp EEEECCCTTCEESSCCSC--------------CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH-
T ss_pred CEEECcchhheecccccc--------------ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH-
Confidence 999999999987653221 12246899999999999999999999999999999999999886321
Q ss_pred CCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 889 HDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 889 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
. ........... + ...+.++.+++.+|++.||++|||+.|++++|+.+.+.
T Consensus 225 ------~------------~~~~~~~~~~~----~-------~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~ 275 (284)
T 2a19_B 225 ------S------------KFFTDLRDGII----S-------DIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKS 275 (284)
T ss_dssp ------H------------HHHHHHHTTCC----C-------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-
T ss_pred ------H------------HHHHHhhcccc----c-------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhC
Confidence 0 01111111111 1 11335688999999999999999999999999998765
Q ss_pred cCC
Q 042568 969 LSS 971 (983)
Q Consensus 969 ~~~ 971 (983)
...
T Consensus 276 ~~~ 278 (284)
T 2a19_B 276 PEK 278 (284)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 197
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=2.3e-37 Score=343.26 Aligned_cols=267 Identities=19% Similarity=0.255 Sum_probs=209.1
Q ss_pred CCCCHHHHHHHhCCCCCC-CccccCCcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcC-CCCcccee
Q 042568 655 PRVSYKQLIEATGGFCPS-SLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIR-HRNLIRII 730 (983)
Q Consensus 655 ~~~~~~~l~~~~~~f~~~-~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~l~ 730 (983)
+.+.+.......++|... +.||+|+||.||+|... +++.||||+++.... ......+.+|++++++++ ||||++++
T Consensus 16 ~n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~ 95 (327)
T 3lm5_A 16 ENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLH 95 (327)
T ss_dssp CCCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred hhhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 344455555556677776 88999999999999965 689999999876543 234678999999999994 69999999
Q ss_pred eEEecCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC---C
Q 042568 731 TICSKPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE---D 807 (983)
Q Consensus 731 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~---~ 807 (983)
+++...+..++||||+++|+|.+++.... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++. +
T Consensus 96 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~i~~ql~~~L~~LH~~g---ivH~Dikp~NIl~~~~~~~ 170 (327)
T 3lm5_A 96 EVYENTSEIILILEYAAGGEIFSLCLPEL--AEMVSENDVIRLIKQILEGVYYLHQNN---IVHLDLKPQNILLSSIYPL 170 (327)
T ss_dssp EEEECSSEEEEEEECCTTEEGGGGGSSCC---CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESCBTTB
T ss_pred EEEEeCCeEEEEEEecCCCcHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCChHHEEEecCCCC
Confidence 99999999999999999999999986432 456999999999999999999999996 999999999999998 7
Q ss_pred CCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcc
Q 042568 808 LTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVL 887 (983)
Q Consensus 808 ~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~ 887 (983)
+.+||+|||+++....... .....||+.|+|||++.+..++.++||||+|+++|||++|+.||...
T Consensus 171 ~~~kL~Dfg~a~~~~~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~ 236 (327)
T 3lm5_A 171 GDIKIVDFGMSRKIGHACE--------------LREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE 236 (327)
T ss_dssp CCEEECCGGGCEEC-----------------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CcEEEeeCccccccCCccc--------------cccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 8999999999987643211 12246999999999999999999999999999999999999998532
Q ss_pred cCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 888 FHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 888 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
.. . +............ ....+..+...+.+++.+|++.||++|||++|++++-
T Consensus 237 ~~-----~------------~~~~~i~~~~~~~-----~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~ 289 (327)
T 3lm5_A 237 DN-----Q------------ETYLNISQVNVDY-----SEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHS 289 (327)
T ss_dssp SH-----H------------HHHHHHHHTCCCC-----CTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCG
T ss_pred Cc-----h------------HHHHHHHhccccc-----CchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCCH
Confidence 10 0 1111111111110 0111233557789999999999999999999999863
No 198
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=344.94 Aligned_cols=273 Identities=24% Similarity=0.340 Sum_probs=210.7
Q ss_pred CCCCCCCccccCCcEeEEEEEE-----CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCC--ce
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-----QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPD--FK 739 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-----~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~ 739 (983)
++|...+.||+|+||.||+|+. .+++.||||++.... .+..+.+.+|++++++++||||+++++++...+ ..
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST-EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC-SHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC-HHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 4677889999999999999984 368889999986543 335678999999999999999999999986554 67
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
++||||+++++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++
T Consensus 120 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~kL~Dfg~~~ 193 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKH---KERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTK 193 (326)
T ss_dssp EEEECCCTTCBHHHHHHHS---TTSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred EEEEECCCCCCHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEEcCCCcEEEecCcchh
Confidence 9999999999999998754 345899999999999999999999996 9999999999999999999999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
......... .......+|..|+|||.+.+..++.++||||||+++|||++|+.||.... ..+..
T Consensus 194 ~~~~~~~~~----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~------~~~~~ 257 (326)
T 2w1i_A 194 VLPQDKEYY----------KVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP------AEFMR 257 (326)
T ss_dssp ECCSSCSEE----------ECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHH------HHHHH
T ss_pred hcccccccc----------ccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCH------HHHHH
Confidence 765432211 11122457888999999998889999999999999999999999975321 11111
Q ss_pred hhCCCCCcHH----HHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 900 RHYPHRLDPI----VEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 900 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
.......... +...+........ ...++.++.+++.+||+.||++|||+.|+++.|+.+++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l 324 (326)
T 2w1i_A 258 MIGNDKQGQMIVFHLIELLKNNGRLPR-------PDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM 324 (326)
T ss_dssp HHCTTCCTHHHHHHHHHHHHTTCCCCC-------CTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred hhccccchhhhHHHHHHHhhcCCCCCC-------CCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 1111111111 1111111111111 1235578999999999999999999999999999998754
No 199
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=2.5e-37 Score=337.28 Aligned_cols=259 Identities=25% Similarity=0.382 Sum_probs=203.1
Q ss_pred CCCCCCC-ccccCCcEeEEEEEE---CCCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeE
Q 042568 667 GGFCPSS-LIGSGRFGHVYKGVL---QDNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 667 ~~f~~~~-~iG~G~~g~Vy~~~~---~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 741 (983)
++|...+ .||+|+||.||+|.+ .+++.||||+++.... ....+++.+|++++++++||||+++++++ ..+..++
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~l 94 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWML 94 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEE
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEE
Confidence 4566677 899999999999964 2467899999976543 23467899999999999999999999999 5567899
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
||||+++++|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++..
T Consensus 95 v~e~~~~~~L~~~l~~----~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 167 (291)
T 1xbb_A 95 VMEMAELGPLNKYLQQ----NRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKAL 167 (291)
T ss_dssp EEECCTTEEHHHHHHH----CTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEeCCCCCHHHHHHh----CcCCCHHHHHHHHHHHHHHHHHHHhCC---eEcCCCCcceEEEeCCCcEEEccCCcceee
Confidence 9999999999999875 345899999999999999999999996 999999999999999999999999999876
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~ 900 (983)
....... .......||+.|+|||.+.+..++.++||||||+++|||++ |+.||..... ..
T Consensus 168 ~~~~~~~----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~------- 228 (291)
T 1xbb_A 168 RADENYY----------KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG--SE------- 228 (291)
T ss_dssp CTTCSEE----------EC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HH-------
T ss_pred ccCCCcc----------cccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCH--HH-------
Confidence 5432211 11122347789999999988889999999999999999999 9999864211 11
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
+...+........+ ..++.++.+++.+|++.||++||++.|+++.|+++-..
T Consensus 229 ---------~~~~~~~~~~~~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~ 280 (291)
T 1xbb_A 229 ---------VTAMLEKGERMGCP-------AGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD 280 (291)
T ss_dssp ---------HHHHHHTTCCCCCC-------TTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHcCCCCCCC-------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 11111111111111 12456799999999999999999999999999988543
No 200
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=6.1e-38 Score=370.50 Aligned_cols=258 Identities=29% Similarity=0.454 Sum_probs=209.1
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEecc
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPLM 746 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 746 (983)
++|...+.||+|+||.||+|.+.++..||||+++.... ..+.|.+|++++++++||||+++++++.. +..++||||+
T Consensus 267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~ 343 (535)
T 2h8h_A 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYM 343 (535)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCC
T ss_pred hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC--CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehh
Confidence 45777889999999999999998888899999975443 35789999999999999999999999876 6789999999
Q ss_pred cCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCcc
Q 042568 747 SNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGIDE 826 (983)
Q Consensus 747 ~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~ 826 (983)
++|+|.+++.... ...+++..++.|+.||++||+|||+++ |+||||||+|||++.++.+||+|||+++.......
T Consensus 344 ~~gsL~~~l~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 418 (535)
T 2h8h_A 344 SKGSLLDFLKGET--GKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEY 418 (535)
T ss_dssp TTEEHHHHHSHHH--HTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHH
T ss_pred cCCcHHHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEEcCCCcEEEcccccceecCCCce
Confidence 9999999997532 345899999999999999999999996 99999999999999999999999999987643211
Q ss_pred cccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCCC
Q 042568 827 SVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPHR 905 (983)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~~ 905 (983)
.......+|..|+|||.+.+..++.++|||||||++|||++ |+.||.... ..
T Consensus 419 ------------~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~-----~~---------- 471 (535)
T 2h8h_A 419 ------------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV-----NR---------- 471 (535)
T ss_dssp ------------HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCC-----HH----------
T ss_pred ------------ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC-----HH----------
Confidence 11122357889999999998899999999999999999999 999986321 11
Q ss_pred CcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 906 LDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
++.+. +........+ ..++.++.+++.+||+.||++|||+++|++.|+.+....
T Consensus 472 --~~~~~-i~~~~~~~~~-------~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~ 525 (535)
T 2h8h_A 472 --EVLDQ-VERGYRMPCP-------PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 525 (535)
T ss_dssp --HHHHH-HHTTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCC
T ss_pred --HHHHH-HHcCCCCCCC-------CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhcc
Confidence 11111 1111111111 234567899999999999999999999999999886543
No 201
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=2.4e-37 Score=336.89 Aligned_cols=248 Identities=21% Similarity=0.311 Sum_probs=200.6
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 742 (983)
.++|...+.||+|+||.||+|... +++.||||+++.... .....++.+|+..+.++ +||||+++++++...+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv 89 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ 89 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence 457888999999999999999976 789999999976533 23457788999999999 999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC----------------
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE---------------- 806 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~---------------- 806 (983)
|||+++++|.+++.........+++..++.++.|+++||+|||+++ |+||||||+||+++.
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~ 166 (289)
T 1x8b_A 90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMS---LVHMDIKPSNIFISRTSIPNAASEEGDEDDW 166 (289)
T ss_dssp EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEC-----------------
T ss_pred EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeecCCCHHHEEEcCCCCCcccccccccccc
Confidence 9999999999999765433366899999999999999999999996 999999999999984
Q ss_pred ---CCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCC-CCCccchhHHHHHHHHHHHhCCC
Q 042568 807 ---DLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK-RASTHGDVYSFGVLLLEIVTGRR 882 (983)
Q Consensus 807 ---~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~k~Dv~SlG~il~elltg~~ 882 (983)
...+||+|||.+....... ...||+.|+|||.+.+. .+++++||||||+++|+|++|+.
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~~-----------------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~ 229 (289)
T 1x8b_A 167 ASNKVMFKIGDLGHVTRISSPQ-----------------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEP 229 (289)
T ss_dssp ---CCCEEECCCTTCEETTCSC-----------------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCceEEEEcccccccccCCcc-----------------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCC
Confidence 4479999999998654321 13589999999998876 56689999999999999999988
Q ss_pred CCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 883 PTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 883 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
|+.. ...... ...... ...+ ...+.++.+++.+|++.||++|||+.|++++
T Consensus 230 ~~~~----~~~~~~----------------~~~~~~-~~~~-------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 280 (289)
T 1x8b_A 230 LPRN----GDQWHE----------------IRQGRL-PRIP-------QVLSQEFTELLKVMIHPDPERRPSAMALVKH 280 (289)
T ss_dssp CCSS----SHHHHH----------------HHTTCC-CCCS-------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred CCcc----hhHHHH----------------HHcCCC-CCCC-------cccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence 7532 111111 111111 1111 1234678999999999999999999999875
No 202
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=351.09 Aligned_cols=257 Identities=15% Similarity=0.141 Sum_probs=205.0
Q ss_pred hCCCCCCCccccCCcEeEEEEE------ECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcC---CCCccceeeEEecC
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGV------LQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIR---HRNLIRIITICSKP 736 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~------~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 736 (983)
.++|.+.++||+|+||.||+|. ..+++.||||+++.. ...++.+|++++++++ |+||+++++++...
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~----~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA----NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC----CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC----ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 4678889999999999999994 446888999998543 3467888999988886 99999999999999
Q ss_pred CceeEEEecccCcccccccccccC-cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC---------
Q 042568 737 DFKALVLPLMSNGSLENHLYPSHG-LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE--------- 806 (983)
Q Consensus 737 ~~~~lv~e~~~~gsL~~~l~~~~~-~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~--------- 806 (983)
+..++||||+++|+|.+++..... ....+++..++.|+.|+++||+|||+++ |+||||||+|||++.
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~---ivHrDiKp~NIll~~~~~~~~~~~ 216 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE---IIHGDIKPDNFILGNGFLEQDDED 216 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECGGGTCC----
T ss_pred CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEecccccCccccc
Confidence 999999999999999999975332 1456999999999999999999999986 999999999999998
Q ss_pred --CCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCC
Q 042568 807 --DLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPT 884 (983)
Q Consensus 807 --~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~ 884 (983)
++.+||+|||+|+.+...... .......||++|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 217 ~~~~~~kl~DFG~a~~~~~~~~~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf 285 (365)
T 3e7e_A 217 DLSAGLALIDLGQSIDMKLFPKG-----------TIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMK 285 (365)
T ss_dssp --CTTEEECCCTTCEEGGGSCTT-----------EEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCC
T ss_pred cccCCEEEeeCchhhhhhccCCC-----------ceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCcc
Confidence 899999999999765422111 1223357999999999999999999999999999999999999998
Q ss_pred CcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCC-CCHHHHHHHHH
Q 042568 885 DVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTR-PSMLDVAHEMG 963 (983)
Q Consensus 885 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R-Ps~~evl~~L~ 963 (983)
.....+... .. ...+.. + ....+.+++..|++.+|.+| |+++++.+.|+
T Consensus 286 ~~~~~~~~~-----------------------~~-~~~~~~----~--~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~ 335 (365)
T 3e7e_A 286 VKNEGGECK-----------------------PE-GLFRRL----P--HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLK 335 (365)
T ss_dssp EEEETTEEE-----------------------EC-SCCTTC----S--SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHH
T ss_pred ccCCCCcee-----------------------ec-hhcccc----C--cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Confidence 543211100 00 000000 0 23456678888999999998 78888899998
Q ss_pred HhHhhcC
Q 042568 964 RLKQYLS 970 (983)
Q Consensus 964 ~~~~~~~ 970 (983)
++.+...
T Consensus 336 ~~l~~~~ 342 (365)
T 3e7e_A 336 KVFQQHY 342 (365)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 8876543
No 203
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.2e-37 Score=352.14 Aligned_cols=285 Identities=21% Similarity=0.260 Sum_probs=194.7
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc-CcchhHHHHHHHHHHHhcC-CCCccceeeEEecCC--ce
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT-TGEITGSFKRECQILKRIR-HRNLIRIITICSKPD--FK 739 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~--~~ 739 (983)
..++|...+.||+|+||.||+|.+. +++.||||++.... ......++.+|+.++++++ ||||+++++++...+ ..
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 4578999999999999999999964 68899999985443 2334567889999999997 999999999997554 67
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
++||||++ ++|.+++.. ..+++..+..++.|+++||+|||+.+ |+||||||+|||++.++.+||+|||+|+
T Consensus 87 ~lv~e~~~-~~L~~~~~~-----~~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~ 157 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRA-----NILEPVHKQYVVYQLIKVIKYLHSGG---LLHRDMKPSNILLNAECHVKVADFGLSR 157 (388)
T ss_dssp EEEEECCS-EEHHHHHHH-----TCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEecccC-cCHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHeEEcCCCCEEecCCcccc
Confidence 99999998 588888763 45899999999999999999999996 9999999999999999999999999998
Q ss_pred cccCCcccccccC--------CCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCC
Q 042568 820 LVKGIDESVNCAN--------DSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHD 890 (983)
Q Consensus 820 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~ 890 (983)
.+........... ............+||+.|+|||.+.+ ..++.++||||+||++|||++|+.||.....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~- 236 (388)
T 3oz6_A 158 SFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSST- 236 (388)
T ss_dssp ESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-
T ss_pred cccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCH-
Confidence 7643211100000 00000112334689999999999887 6789999999999999999999999864211
Q ss_pred CCchHHHHHhhC-----------CCCCcHHHHHHHhhcCCCCCccccccch-------------HHHHHHHHHHHhhhcC
Q 042568 891 GSSLHEWVKRHY-----------PHRLDPIVEKAIAKYAPQHMPIYYNKVW-------------SDVVLELIELGLLCTQ 946 (983)
Q Consensus 891 ~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~l~~~cl~ 946 (983)
...+...+...- .......++. +....... .......+ ..+..++.+++.+|++
T Consensus 237 ~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~ 314 (388)
T 3oz6_A 237 MNQLERIIGVIDFPSNEDVESIQSPFAKTMIES-LKEKVEIR-QSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQ 314 (388)
T ss_dssp HHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHH-HHHHCC------CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHh-Cccccccc-CCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhc
Confidence 011111111100 0000111111 11100000 00000001 1235678999999999
Q ss_pred CCCCCCCCHHHHHHH
Q 042568 947 YNPSTRPSMLDVAHE 961 (983)
Q Consensus 947 ~dP~~RPs~~evl~~ 961 (983)
.||++|||++|+++|
T Consensus 315 ~dP~~R~t~~e~l~H 329 (388)
T 3oz6_A 315 FNPNKRISANDALKH 329 (388)
T ss_dssp SSGGGSCCHHHHTTS
T ss_pred cCcccCCCHHHHhCC
Confidence 999999999999987
No 204
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=1.3e-37 Score=337.24 Aligned_cols=253 Identities=29% Similarity=0.401 Sum_probs=199.2
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecC-CceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKP-DFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~lv~e~ 745 (983)
++|...+.||+|+||.||+|... ++.||||+++... ..+++.+|++++++++||||+++++++... +..++||||
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 21 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC-----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh---HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 56888999999999999999885 8899999986443 357899999999999999999999987544 478999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGID 825 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~ 825 (983)
+++++|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++......
T Consensus 97 ~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 171 (278)
T 1byg_A 97 MAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ 171 (278)
T ss_dssp CTTEEHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC--------
T ss_pred CCCCCHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCCcceEEEeCCCcEEEeeccccccccccc
Confidence 99999999987532 234789999999999999999999996 9999999999999999999999999987554211
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPH 904 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~ 904 (983)
....+|+.|+|||.+.+..++.++||||||+++|||++ |+.||.... ..
T Consensus 172 ----------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~--~~------------ 221 (278)
T 1byg_A 172 ----------------DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LK------------ 221 (278)
T ss_dssp --------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC--GG------------
T ss_pred ----------------cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCC--HH------------
Confidence 12357889999999998899999999999999999998 999986321 11
Q ss_pred CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 905 RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
..... +........+ ..++.++.+++.+|++.||++|||+.|+++.|++++...
T Consensus 222 ---~~~~~-~~~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~ 275 (278)
T 1byg_A 222 ---DVVPR-VEKGYKMDAP-------DGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 275 (278)
T ss_dssp ---GHHHH-HTTTCCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred ---HHHHH-HhcCCCCCCc-------ccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence 11111 1111111111 224567899999999999999999999999999997653
No 205
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=7.8e-38 Score=351.52 Aligned_cols=245 Identities=25% Similarity=0.317 Sum_probs=190.6
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHH-HHhcCCCCccceeeEEecCCceeEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQI-LKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
++|...+.||+|+||.||+|+.. +++.||||+++.... ......+.+|..+ ++.++||||+++++++...+..++|
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv 117 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV 117 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence 56888999999999999999976 578899999976542 2234556677776 5678999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|||+++|+|.+++... ..+++..++.++.||+.||+|||+++ |+||||||+|||++.++.+||+|||+++...
T Consensus 118 ~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~ 190 (373)
T 2r5t_A 118 LDYINGGELFYHLQRE----RCFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKENI 190 (373)
T ss_dssp EECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCBCGGGB
T ss_pred EeCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEeeCccccccc
Confidence 9999999999988753 45889999999999999999999996 9999999999999999999999999998543
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||... ..
T Consensus 191 ~~~-------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~-------- 244 (373)
T 2r5t_A 191 EHN-------------STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR-----NT-------- 244 (373)
T ss_dssp CCC-------------CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-----BH--------
T ss_pred cCC-------------CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC-----CH--------
Confidence 211 1223457999999999999999999999999999999999999998632 11
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLD 957 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~e 957 (983)
.+..+..+.... ..+ .....++.+++.+|++.||++||++.+
T Consensus 245 ----~~~~~~i~~~~~--~~~-------~~~~~~~~~li~~lL~~dp~~R~~~~~ 286 (373)
T 2r5t_A 245 ----AEMYDNILNKPL--QLK-------PNITNSARHLLEGLLQKDRTKRLGAKD 286 (373)
T ss_dssp ----HHHHHHHHHSCC--CCC-------SSSCHHHHHHHHHHTCSSGGGSTTTTT
T ss_pred ----HHHHHHHHhccc--CCC-------CCCCHHHHHHHHHHcccCHHhCCCCCC
Confidence 112222222111 111 123467899999999999999999853
No 206
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.5e-37 Score=340.14 Aligned_cols=263 Identities=22% Similarity=0.278 Sum_probs=200.9
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
-++|...+.||+|+||.||+|... +++.||||++..... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 468999999999999999999975 688899999865432 22357899999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|||+++++|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||++....
T Consensus 113 ~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 185 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQ----GPLAPPRAVAIVRQIGSALDAAHAAG---ATHRDVKPENILVSADDFAYLVDFGIASATT 185 (309)
T ss_dssp EECCCCEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSCCC-----
T ss_pred EEecCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCc---CCcCCCChHHEEEcCCCCEEEecCccCcccc
Confidence 9999999999998753 45899999999999999999999996 9999999999999999999999999998654
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.... .......||+.|+|||.+.+..++.++||||||+++|||++|+.||..... .
T Consensus 186 ~~~~------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~------- 241 (309)
T 2h34_A 186 DEKL------------TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQL-----S------- 241 (309)
T ss_dssp -----------------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHH-----H-------
T ss_pred cccc------------ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchH-----H-------
Confidence 3211 111234699999999999999999999999999999999999999863210 0
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCC-CHHHHHHHHHHhHhhcC
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRP-SMLDVAHEMGRLKQYLS 970 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-s~~evl~~L~~~~~~~~ 970 (983)
.....+...... + .......+.++.+++.+|++.||++|| +++++++.|+.......
T Consensus 242 ------~~~~~~~~~~~~--~---~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~ 299 (309)
T 2h34_A 242 ------VMGAHINQAIPR--P---STVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATAD 299 (309)
T ss_dssp ------HHHHHHHSCCCC--G---GGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC---
T ss_pred ------HHHHHhccCCCC--c---cccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhc
Confidence 111111111110 0 011123456788999999999999999 99999999998765543
No 207
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=2.2e-37 Score=348.90 Aligned_cols=277 Identities=23% Similarity=0.297 Sum_probs=206.8
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecC-----Cc
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKP-----DF 738 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 738 (983)
..++|...+.||+|+||.||+|... +++.||||++..........++.+|++++++++||||+++++++... ..
T Consensus 25 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 104 (364)
T 3qyz_A 25 VGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD 104 (364)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred ccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence 3568999999999999999999965 67889999997655555567899999999999999999999999655 36
Q ss_pred eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccc
Q 042568 739 KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIA 818 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla 818 (983)
.++||||++ |+|.+++.. ..+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||++
T Consensus 105 ~~iv~e~~~-~~L~~~l~~-----~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a 175 (364)
T 3qyz_A 105 VYIVQDLME-TDLYKLLKT-----QHLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLA 175 (364)
T ss_dssp EEEEEECCS-EEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred EEEEEcccC-cCHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChHhEEECCCCCEEEEeCcce
Confidence 799999998 588888863 45899999999999999999999996 999999999999999999999999999
Q ss_pred ccccCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHH
Q 042568 819 KLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEW 897 (983)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~ 897 (983)
+........ ........||+.|+|||.+.+ ..++.++||||+||++|||++|+.||..... ...+...
T Consensus 176 ~~~~~~~~~----------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~~~i 244 (364)
T 3qyz_A 176 RVADPDHDH----------TGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHY-LDQLNHI 244 (364)
T ss_dssp EECCGGGCB----------CCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSG-GGHHHHH
T ss_pred EecCCCCCc----------cccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCCh-HHHHHHH
Confidence 876543221 011233579999999998654 4589999999999999999999999864211 1112222
Q ss_pred HHhhCCCC-------CcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 898 VKRHYPHR-------LDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 898 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
+....... ............ +..........+.....++.+++.+|++.||++|||++|++++-
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp 315 (364)
T 3qyz_A 245 LGILGSPSQEDLNCIINLKARNYLLSL-PHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHP 315 (364)
T ss_dssp HHHHCSCCHHHHHTCCCHHHHHHHHTS-CCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSG
T ss_pred HHHhCCCCHHHHHHhhhhhHHHHHHhc-CCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCc
Confidence 21111111 000011111111 11111111111223457789999999999999999999999864
No 208
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=1.8e-37 Score=336.97 Aligned_cols=258 Identities=23% Similarity=0.321 Sum_probs=204.9
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-----chhHHHHHHHHHHHhcCCCCccceeeEEecCCcee
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-----EITGSFKRECQILKRIRHRNLIRIITICSKPDFKA 740 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 740 (983)
++|...+.||+|+||.||+|... +++.||||.++..... ...+.+.+|++++++++||||+++++++......+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 46888999999999999999976 6899999998654322 23678999999999999999999999999999999
Q ss_pred EEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC----CEEEcccc
Q 042568 741 LVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL----TALVADFG 816 (983)
Q Consensus 741 lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~----~~kl~Dfg 816 (983)
+||||+++++|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++ .+||+|||
T Consensus 85 lv~e~~~~~~L~~~l~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~~~~kl~dfg 157 (283)
T 3bhy_A 85 LILELVSGGELFDFLAE----KESLTEDEATQFLKQILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFG 157 (283)
T ss_dssp EEEECCCSCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEeecCCCcHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChHHEEEecCCCCCCceEEEecc
Confidence 99999999999999864 346899999999999999999999996 99999999999998877 89999999
Q ss_pred ccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHH
Q 042568 817 IAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHE 896 (983)
Q Consensus 817 la~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~ 896 (983)
.+........ .....||+.|+|||.+.+..++.++||||||+++|+|++|+.||.... ..+
T Consensus 158 ~~~~~~~~~~--------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~ 218 (283)
T 3bhy_A 158 IAHKIEAGNE--------------FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGET-----KQE 218 (283)
T ss_dssp TCEECC----------------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSS-----HHH
T ss_pred cceeccCCCc--------------ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcc-----hHH
Confidence 9986643211 122468999999999999999999999999999999999999986321 111
Q ss_pred HHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH--HHHhHh
Q 042568 897 WVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE--MGRLKQ 967 (983)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~--L~~~~~ 967 (983)
.. .. +...... .+ ...+...+..+.+++.+|++.||++|||+.|++++ ++.++.
T Consensus 219 ~~------------~~-~~~~~~~-~~---~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~ 274 (283)
T 3bhy_A 219 TL------------TN-ISAVNYD-FD---EEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRR 274 (283)
T ss_dssp HH------------HH-HHTTCCC-CC---HHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHH
T ss_pred HH------------HH-hHhcccC-Cc---chhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHH
Confidence 11 11 1110000 00 01112345678999999999999999999999985 445443
No 209
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.8e-37 Score=352.05 Aligned_cols=273 Identities=19% Similarity=0.269 Sum_probs=199.4
Q ss_pred HHhCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecC------
Q 042568 664 EATGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKP------ 736 (983)
Q Consensus 664 ~~~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------ 736 (983)
...++|...+.||+|+||.||+|.. .+++.||||++..... ...+|+++++.++||||+++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~-----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR-----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT-----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc-----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 3467899999999999999999996 5789999999864422 234799999999999999999998432
Q ss_pred --------------------------------CceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHH
Q 042568 737 --------------------------------DFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYL 784 (983)
Q Consensus 737 --------------------------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~L 784 (983)
...++||||++ |+|.+.+.........+++..++.++.|+++||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L 157 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI 157 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34789999998 587777664333356799999999999999999999
Q ss_pred hccCCCCeEeecCCCCCeEeC-CCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCC-CCC
Q 042568 785 HHHSPIKVVHCDLKPSNILLD-EDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK-RAS 862 (983)
Q Consensus 785 H~~~~~~ivH~Dikp~NiLl~-~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~ 862 (983)
|+.+ |+||||||+||+++ .++.+||+|||+|+....... .....||+.|+|||.+.+. .++
T Consensus 158 H~~g---i~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--------------~~~~~~t~~y~aPE~~~~~~~~~ 220 (383)
T 3eb0_A 158 HSLG---ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP--------------SVAYICSRFYRAPELMLGATEYT 220 (383)
T ss_dssp HTTT---EECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC--------------CCCCCCCSSCCCHHHHTTCSSCC
T ss_pred HHCc---CccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC--------------CcCcccCCCccCHHHhcCCCCCC
Confidence 9996 99999999999998 689999999999987643221 1224689999999998875 489
Q ss_pred ccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchH-----HHHHHH
Q 042568 863 THGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWS-----DVVLEL 937 (983)
Q Consensus 863 ~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l 937 (983)
.++||||+||++|||++|+.||.... ....+...+...-.+.. +.+...-........+......|. ..+.++
T Consensus 221 ~~~DiwslG~il~ell~g~~pf~~~~-~~~~~~~i~~~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3eb0_A 221 PSIDLWSIGCVFGELILGKPLFSGET-SIDQLVRIIQIMGTPTK-EQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLA 298 (383)
T ss_dssp THHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCCCCH-HHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHH
T ss_pred cchhhhhHHHHHHHHHhCCCCCCCCC-hHHHHHHHHHHhCCCCH-HHHHHhCcccccccCCccCcccHHhhCCCCCCHHH
Confidence 99999999999999999999986421 11112222222211111 111111111111111111122222 245679
Q ss_pred HHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 938 IELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 938 ~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.+++.+|++.||++|||+.|+++|
T Consensus 299 ~~li~~~L~~dP~~R~t~~e~l~h 322 (383)
T 3eb0_A 299 IDLLEQILRYEPDLRINPYEAMAH 322 (383)
T ss_dssp HHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred HHHHHHHccCChhhCCCHHHHhcC
Confidence 999999999999999999999964
No 210
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=7.9e-38 Score=339.06 Aligned_cols=262 Identities=21% Similarity=0.278 Sum_probs=205.2
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEe--cCCceeE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICS--KPDFKAL 741 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~~l 741 (983)
.++|...+.||+|+||.||+|... +++.||+|.+..... ....+.+.+|++++++++||||+++++++. .....++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 357888999999999999999975 688999999976542 334678999999999999999999999874 4567899
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCC--CCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSP--IKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~--~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
||||+++++|.+++.........+++..++.++.|+++||+|||+.+. .+|+||||||+||+++.++.+||+|||.++
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~ 164 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR 164 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence 999999999999997654434569999999999999999999999841 139999999999999999999999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
....... ......||+.|+|||.+.+..++.++||||||+++|+|++|+.||.... ..
T Consensus 165 ~~~~~~~-------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~---- 222 (279)
T 2w5a_A 165 ILNHDTS-------------FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS-----QK---- 222 (279)
T ss_dssp HC---CH-------------HHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSS-----HH----
T ss_pred eeccccc-------------cccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccC-----HH----
Confidence 7643211 1122468999999999999899999999999999999999999986421 01
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHh
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRL 965 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~ 965 (983)
...+. +........+ ...+.++.+++.+|++.||++|||++|+++++...
T Consensus 223 --------~~~~~-i~~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~ 272 (279)
T 2w5a_A 223 --------ELAGK-IREGKFRRIP-------YRYSDELNEIITRMLNLKDYHRPSVEEILENPLIL 272 (279)
T ss_dssp --------HHHHH-HHHTCCCCCC-------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCC
T ss_pred --------HHHHH-HhhcccccCC-------cccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhh
Confidence 11111 1111111111 12446789999999999999999999999876543
No 211
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=5.4e-37 Score=356.97 Aligned_cols=287 Identities=19% Similarity=0.230 Sum_probs=190.3
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecC-----Cc
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKP-----DF 738 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 738 (983)
.++|.+.++||+|+||.||+|.+. +++.||||++..... ....+++.+|++++++++||||+++++++... ..
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 368999999999999999999965 688999999865432 23457899999999999999999999999433 56
Q ss_pred eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccc
Q 042568 739 KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIA 818 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla 818 (983)
.++||||+. ++|.+++.. ...+++..++.++.||++||+|||+.+ |+||||||+|||++.++.+||+|||+|
T Consensus 132 ~~lv~e~~~-~~L~~~~~~----~~~l~~~~~~~~~~qi~~aL~~LH~~~---iiHrDlKp~NILl~~~~~~kl~DFGla 203 (458)
T 3rp9_A 132 LYVVLEIAD-SDFKKLFRT----PVYLTELHIKTLLYNLLVGVKYVHSAG---ILHRDLKPANCLVNQDCSVKVCDFGLA 203 (458)
T ss_dssp EEEEECCCS-EEHHHHHHS----SCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred EEEEEeccc-cchhhhccc----CCCCCHHHHHHHHHHHHHHHHHHHhCC---cCCCCCChhhEEECCCCCEeecccccc
Confidence 899999985 688888764 346999999999999999999999996 999999999999999999999999999
Q ss_pred ccccCCcccccccC--------------CCCccccccCcccccccccccccc-CCCCCCccchhHHHHHHHHHHHhC---
Q 042568 819 KLVKGIDESVNCAN--------------DSMSFTSTDGLLCGSVGYIAPEYG-MGKRASTHGDVYSFGVLLLEIVTG--- 880 (983)
Q Consensus 819 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~k~Dv~SlG~il~elltg--- 880 (983)
+............. ............+||+.|+|||++ .+..++.++|||||||++|||++|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~ 283 (458)
T 3rp9_A 204 RTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKE 283 (458)
T ss_dssp BCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTT
T ss_pred hhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccc
Confidence 87753321100000 000001123446799999999976 456799999999999999999995
Q ss_pred --------CCCCCcccCCC-------------------CchHHHHHhhCCCC-------CcHHHHHHHhhcCCCCCcccc
Q 042568 881 --------RRPTDVLFHDG-------------------SSLHEWVKRHYPHR-------LDPIVEKAIAKYAPQHMPIYY 926 (983)
Q Consensus 881 --------~~p~~~~~~~~-------------------~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 926 (983)
+.+|.....-. ..+..+....-... ........+. ..+.......
T Consensus 284 ~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 362 (458)
T 3rp9_A 284 NVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIR-IFPKREGTDL 362 (458)
T ss_dssp TCSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHT-TSCCCCCCCG
T ss_pred cccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHH-hcCCCCCCCH
Confidence 44442210000 00000000000000 0001111111 1111111122
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 927 NKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 927 ~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
...+.....++.+|+.+|++.||++|||++|+++|
T Consensus 363 ~~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~H 397 (458)
T 3rp9_A 363 AERFPASSADAIHLLKRMLVFNPNKRITINECLAH 397 (458)
T ss_dssp GGGSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHHCCCCCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence 22334457789999999999999999999999986
No 212
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=2.2e-37 Score=348.19 Aligned_cols=269 Identities=22% Similarity=0.255 Sum_probs=188.0
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecC------C
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKP------D 737 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~ 737 (983)
.++|...+.||+|+||.||+|.. .+|+.||||++..... ....+++.+|+++++.++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 46888999999999999999995 4688999999865432 23457888999999999999999999998654 5
Q ss_pred ceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccc
Q 042568 738 FKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGI 817 (983)
Q Consensus 738 ~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgl 817 (983)
..++|+||+ +++|.+++.. ..+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kL~DFG~ 178 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC-----QKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGL 178 (367)
T ss_dssp CCEEEEECC-CEECC----------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECC---
T ss_pred eEEEEeccc-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHhhEEECCCCCEEEeeccc
Confidence 679999999 6899988863 45899999999999999999999996 99999999999999999999999999
Q ss_pred cccccCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHH
Q 042568 818 AKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHE 896 (983)
Q Consensus 818 a~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~ 896 (983)
++..... .....||+.|+|||.+.+ ..++.++||||+||++|||++|+.||..... ...+..
T Consensus 179 a~~~~~~----------------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~l~~ 241 (367)
T 2fst_X 179 ARHTADE----------------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH-IDQLKL 241 (367)
T ss_dssp ----------------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHH
T ss_pred ccccccc----------------CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHH
Confidence 9865321 122479999999999887 6789999999999999999999999864211 011111
Q ss_pred HHHhhCCC-------CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 897 WVKRHYPH-------RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 897 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
+....-.+ .........+...... .+......+.....++.+++.+|++.||++|||++|++++
T Consensus 242 i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h 312 (367)
T 2fst_X 242 ILRLVGTPGAELLKKISSESARNYIQSLTQM-PKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH 312 (367)
T ss_dssp HHHHHCSCCHHHHTTCCCHHHHHHHHTSCCC-CCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHHhCCCCHHHHHHhhhHHHHHHHhccCCC-CCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence 11111110 0111112222211111 1111111222345778999999999999999999999986
No 213
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=6.5e-37 Score=344.61 Aligned_cols=258 Identities=26% Similarity=0.385 Sum_probs=206.1
Q ss_pred HHHHHhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-------chhHHHHHHHHHHHhc-CCCCccceee
Q 042568 661 QLIEATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-------EITGSFKRECQILKRI-RHRNLIRIIT 731 (983)
Q Consensus 661 ~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-------~~~~~~~~E~~~l~~l-~h~niv~l~~ 731 (983)
......++|.+.+.||+|+||.||+|... +|+.||||++...... +..+.+.+|+++++++ +||||+++++
T Consensus 88 ~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~ 167 (365)
T 2y7j_A 88 AAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLID 167 (365)
T ss_dssp HHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred hhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEE
Confidence 33445678999999999999999999975 7899999998654321 2246788999999999 7999999999
Q ss_pred EEecCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEE
Q 042568 732 ICSKPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTAL 811 (983)
Q Consensus 732 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~k 811 (983)
++......++||||+++++|.+++.. ...+++..+..++.|++.||.|||+.+ |+||||||+||+++.++.+|
T Consensus 168 ~~~~~~~~~lv~e~~~g~~L~~~l~~----~~~l~~~~~~~i~~qi~~~L~~LH~~g---i~H~Dlkp~NIl~~~~~~ik 240 (365)
T 2y7j_A 168 SYESSSFMFLVFDLMRKGELFDYLTE----KVALSEKETRSIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIR 240 (365)
T ss_dssp EEEBSSEEEEEECCCTTCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEE
T ss_pred EEeeCCEEEEEEEeCCCCcHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEE
Confidence 99999999999999999999999874 345899999999999999999999996 99999999999999999999
Q ss_pred EccccccccccCCcccccccCCCCccccccCccccccccccccccCC------CCCCccchhHHHHHHHHHHHhCCCCCC
Q 042568 812 VADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG------KRASTHGDVYSFGVLLLEIVTGRRPTD 885 (983)
Q Consensus 812 l~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~k~Dv~SlG~il~elltg~~p~~ 885 (983)
|+|||++..+..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.
T Consensus 241 l~DfG~~~~~~~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~ 306 (365)
T 2y7j_A 241 LSDFGFSCHLEPGEK--------------LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFW 306 (365)
T ss_dssp ECCCTTCEECCTTCC--------------BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEecCcccccCCCcc--------------cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCC
Confidence 999999987653221 123579999999998753 357899999999999999999999985
Q ss_pred cccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 886 VLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 886 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
... ... ............ ....|...+.++.+++.+|++.||++|||++|++++
T Consensus 307 ~~~-----~~~------------~~~~i~~~~~~~-----~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 360 (365)
T 2y7j_A 307 HRR-----QIL------------MLRMIMEGQYQF-----SSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQH 360 (365)
T ss_dssp CSS-----HHH------------HHHHHHHTCCCC-----CHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred CCC-----HHH------------HHHHHHhCCCCC-----CCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 321 011 111111111110 011122345678999999999999999999999875
No 214
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=4e-37 Score=356.28 Aligned_cols=271 Identities=22% Similarity=0.328 Sum_probs=209.4
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCC-CCccceeeEEecCCceeEEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRH-RNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~lv~ 743 (983)
.++|.+.++||+|+||.||+|.+ .+++.||||++..... ..++.+|+++++.++| +++..+..++...+..++||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~---~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvm 82 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK---HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVM 82 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS---SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc---cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEE
Confidence 36799999999999999999996 5689999998865443 3568899999999987 55666666677788889999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe---CCCCCEEEcccccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL---DEDLTALVADFGIAKL 820 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl---~~~~~~kl~Dfgla~~ 820 (983)
||+ +++|.+++... ...+++..++.|+.||+.||+|||+++ |+||||||+|||+ +.++.+||+|||+++.
T Consensus 83 e~~-g~sL~~ll~~~---~~~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDIKP~NILl~~~~~~~~vkL~DFGla~~ 155 (483)
T 3sv0_A 83 DLL-GPSLEDLFNFC---SRKLSLKTVLMLADQMINRVEFVHSKS---FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKK 155 (483)
T ss_dssp ECC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred ECC-CCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCcceEEEecCCCCCeEEEEeCCccee
Confidence 999 89999998743 346999999999999999999999996 9999999999999 6889999999999987
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHh
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~ 900 (983)
+.......... ........||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....+..
T Consensus 156 ~~~~~~~~~~~------~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~--~~~~~~~~ 227 (483)
T 3sv0_A 156 YRDTSTHQHIP------YRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAG--TKKQKYEK 227 (483)
T ss_dssp CBCTTTCCBCC------CCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS--SHHHHHHH
T ss_pred ccCCccccccc------cccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccch--hHHHHHHH
Confidence 76433221100 11223467999999999999999999999999999999999999999753221 11111110
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcC
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLS 970 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~ 970 (983)
+.+...... .......++.++.+++.+||+.+|++||++++|++.|+++.+...
T Consensus 228 --------i~~~~~~~~--------~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~~ 281 (483)
T 3sv0_A 228 --------ISEKKVATS--------IEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREG 281 (483)
T ss_dssp --------HHHHHHHSC--------HHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred --------Hhhcccccc--------HHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHcC
Confidence 011111000 000011245689999999999999999999999999999866543
No 215
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=3.6e-37 Score=369.74 Aligned_cols=254 Identities=26% Similarity=0.393 Sum_probs=200.5
Q ss_pred CccccCCcEeEEEEEEC---CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEecccC
Q 042568 673 SLIGSGRFGHVYKGVLQ---DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPLMSN 748 (983)
Q Consensus 673 ~~iG~G~~g~Vy~~~~~---~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 748 (983)
+.||+|+||.||+|.+. .++.||||+++.... ....+++.+|++++++++||||+++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999753 457799999976533 3346789999999999999999999999975 457899999999
Q ss_pred cccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCcccc
Q 042568 749 GSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGIDESV 828 (983)
Q Consensus 749 gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~~~ 828 (983)
|+|.+++.. ...+++..++.|+.||++||+|||+++ |+||||||+|||++.++.+||+|||+|+.+.......
T Consensus 454 g~L~~~l~~----~~~l~~~~~~~i~~qi~~~L~yLH~~~---iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~ 526 (635)
T 4fl3_A 454 GPLNKYLQQ----NRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 526 (635)
T ss_dssp EEHHHHHHH----CTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-----
T ss_pred CCHHHHHhh----CCCCCHHHHHHHHHHHHHHHHHHHHCC---EeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccc
Confidence 999999964 346899999999999999999999996 9999999999999999999999999998765432211
Q ss_pred cccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHhhCCCCCc
Q 042568 829 NCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKRHYPHRLD 907 (983)
Q Consensus 829 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~~~~~~~~ 907 (983)
.......||+.|+|||++.+..++.++|||||||++|||++ |+.||.....
T Consensus 527 ----------~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~------------------ 578 (635)
T 4fl3_A 527 ----------KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG------------------ 578 (635)
T ss_dssp ------------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH------------------
T ss_pred ----------ccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH------------------
Confidence 11222357889999999999999999999999999999998 9999864211
Q ss_pred HHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhc
Q 042568 908 PIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYL 969 (983)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~ 969 (983)
..+...+........+ ..++.++.+++.+||+.||++||++++|++.|+++....
T Consensus 579 ~~~~~~i~~~~~~~~p-------~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l 633 (635)
T 4fl3_A 579 SEVTAMLEKGERMGCP-------AGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 633 (635)
T ss_dssp HHHHHHHHTTCCCCCC-------TTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCC-------CCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence 1111112111111111 235578999999999999999999999999999886554
No 216
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.8e-37 Score=347.31 Aligned_cols=350 Identities=22% Similarity=0.238 Sum_probs=225.3
Q ss_pred ccCCCCCCCCCCc-ceeeEEECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEe
Q 042568 53 ALESWNSTDVHVC-NWSGVKCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLS 131 (983)
Q Consensus 53 ~l~sw~~~~~~~c-~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (983)
.+++|... .+|| .|.+..|.....+ +............-..+++|++|++++|.++...+..+..+++|++|+
T Consensus 2 ~~~~~~~~-~~C~~~~~~~~c~~~~~~-----i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~ 75 (390)
T 3o6n_A 2 NVKPRQPE-YKCIDSNLQYDCVFYDVH-----IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75 (390)
T ss_dssp -----CCE-ECBCC------EEEESCE-----ECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEE
T ss_pred CcCCCCCc-cceehhhhhhccceeeee-----eecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEE
Confidence 36789874 4555 4555555422111 122222222223334678999999999999844334578999999999
Q ss_pred ccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccC
Q 042568 132 LSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSN 211 (983)
Q Consensus 132 Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N 211 (983)
|++|.+++..|..|+.+++|++|+|++|++++..|..+ ..+++|++|+|++|.++ .+|...+..+++|++|++++|
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh---cCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCC
Confidence 99999997777799999999999999999986555544 37889999999999988 677777788999999999999
Q ss_pred ccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccC
Q 042568 212 RLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAG 291 (983)
Q Consensus 212 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 291 (983)
++++..|..|+++++|++|++++|++++ ++ +..+++|++|++++|.+.. +...++|++|++++
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~~L~l~~n~l~~-------------~~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLST-------------LAIPIAVEELDASH 214 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCSEEECCSSCCSE-------------EECCSSCSEEECCS
T ss_pred ccCccChhhccCCCCCCEEECCCCcCCc-cc---cccccccceeecccccccc-------------cCCCCcceEEECCC
Confidence 9998888889999999999999999873 43 4567888888888887643 22335677777777
Q ss_pred CcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCC
Q 042568 292 NNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEI 371 (983)
Q Consensus 292 n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 371 (983)
|++... |... ..+|+.|++++|.+++. +.+..+++|++|++++|.+++..|..+..+++|++|+|++|.+++ +
T Consensus 215 n~l~~~-~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~ 287 (390)
T 3o6n_A 215 NSINVV-RGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 287 (390)
T ss_dssp SCCCEE-ECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-E
T ss_pred Ceeeec-cccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-c
Confidence 776643 2211 23566666666666542 345555666666666666655555555556666666666665553 3
Q ss_pred CCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCcccc
Q 042568 372 PSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKIS 440 (983)
Q Consensus 372 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 440 (983)
|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+++. + +..+++|+.|++++|+++
T Consensus 288 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence 444455555555555555555 3344455555555555555555532 2 444555555555555554
No 217
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-37 Score=348.05 Aligned_cols=256 Identities=23% Similarity=0.334 Sum_probs=202.7
Q ss_pred CCCCCCCccccCCcEeEEEEEE----CCCcEEEEEEeeccc---CcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCc
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL----QDNTRIAVKVLDLTT---TGEITGSFKRECQILKRI-RHRNLIRIITICSKPDF 738 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~----~~~~~vAvK~~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 738 (983)
++|...+.||+|+||.||+|+. .+++.||||+++... .....+.+.+|+++++++ +||||+++++++...+.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 5788899999999999999997 368999999986543 122456778899999999 69999999999999999
Q ss_pred eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccc
Q 042568 739 KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIA 818 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla 818 (983)
.++||||+++|+|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+|||++.++.+||+|||++
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~DfG~a 206 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQR----ERFTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLS 206 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEESCSSEE
T ss_pred EEEEeecCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCcEEEeeCCCC
Confidence 99999999999999998753 45899999999999999999999996 999999999999999999999999999
Q ss_pred ccccCCcccccccCCCCccccccCccccccccccccccCC--CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHH
Q 042568 819 KLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG--KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHE 896 (983)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~ 896 (983)
+....... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... .....
T Consensus 207 ~~~~~~~~------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~-~~~~~ 273 (355)
T 1vzo_A 207 KEFVADET------------ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK-NSQAE 273 (355)
T ss_dssp EECCGGGG------------GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC-CCHHH
T ss_pred eecccCCC------------CcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCcc-chHHH
Confidence 86543221 11223579999999999986 34789999999999999999999998643211 11111
Q ss_pred HHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCC-----CHHHHHHHHH
Q 042568 897 WVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRP-----SMLDVAHEMG 963 (983)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~evl~~L~ 963 (983)
+....... ... .+ .+....+.+++.+|++.||++|| +++|++++..
T Consensus 274 ------------~~~~~~~~-~~~-~~-------~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~ 324 (355)
T 1vzo_A 274 ------------ISRRILKS-EPP-YP-------QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLF 324 (355)
T ss_dssp ------------HHHHHHHC-CCC-CC-------TTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGG
T ss_pred ------------HHHHHhcc-CCC-CC-------cccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcc
Confidence 11111111 110 11 12446788999999999999999 9999998753
No 218
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=4.7e-37 Score=337.39 Aligned_cols=253 Identities=25% Similarity=0.358 Sum_probs=202.7
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|...+.||+|+||.||+|+.. +++.||||.++..... ..+.+.+|++++++++||||+++++++...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAF-RDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ 86 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEeccccc-chHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence 356888999999999999999975 6889999999754322 34678899999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe---CCCCCEEEccccccccc
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL---DEDLTALVADFGIAKLV 821 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl---~~~~~~kl~Dfgla~~~ 821 (983)
|+++++|.+++... ..+++..+..++.|+++||+|||+.+ |+||||||+||++ +.++.+||+|||+++..
T Consensus 87 ~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~ 159 (304)
T 2jam_A 87 LVSGGELFDRILER----GVYTEKDASLVIQQVLSAVKYLHENG---IVHRDLKPENLLYLTPEENSKIMITDFGLSKME 159 (304)
T ss_dssp CCCSCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCC
T ss_pred cCCCccHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEecCCCCCCEEEccCCcceec
Confidence 99999999988642 45899999999999999999999996 9999999999999 78899999999998754
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
... ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||.... ..
T Consensus 160 ~~~---------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~~------ 213 (304)
T 2jam_A 160 QNG---------------IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEET-----ES------ 213 (304)
T ss_dssp CCB---------------TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSC-----HH------
T ss_pred CCC---------------ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC-----HH------
Confidence 321 1122468999999999999999999999999999999999999985321 01
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
...+......... + ...+...+.++.+++.+|++.||++|||++|++++-.
T Consensus 214 ------~~~~~i~~~~~~~--~---~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~ 264 (304)
T 2jam_A 214 ------KLFEKIKEGYYEF--E---SPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPW 264 (304)
T ss_dssp ------HHHHHHHHCCCCC--C---TTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHH
T ss_pred ------HHHHHHHcCCCCC--C---ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcc
Confidence 1111111111110 0 1112335578999999999999999999999998643
No 219
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=2.9e-37 Score=348.05 Aligned_cols=281 Identities=20% Similarity=0.222 Sum_probs=202.4
Q ss_pred HHHHHHHhCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcc----------hhHHHHHHHHHHHhcCCCCccc
Q 042568 659 YKQLIEATGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGE----------ITGSFKRECQILKRIRHRNLIR 728 (983)
Q Consensus 659 ~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~----------~~~~~~~E~~~l~~l~h~niv~ 728 (983)
.+++....++|...+.||+|+||.||+|...+++.||||++....... ..+++.+|++++++++||||++
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~ 93 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG 93 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence 456777889999999999999999999998889999999985543221 2378999999999999999999
Q ss_pred eeeEEec-----CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeE
Q 042568 729 IITICSK-----PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNIL 803 (983)
Q Consensus 729 l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiL 803 (983)
+++++.. ....++||||++ |+|.+++... ...+++..+..++.|+++||+|||+.+ |+||||||+||+
T Consensus 94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl 166 (362)
T 3pg1_A 94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ---RIVISPQHIQYFMYHILLGLHVLHEAG---VVHRDLHPGNIL 166 (362)
T ss_dssp CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCT---TSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEE
T ss_pred eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHHCc---CEecCCChHHEE
Confidence 9999843 335799999998 5787777643 346899999999999999999999996 999999999999
Q ss_pred eCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCC
Q 042568 804 LDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRR 882 (983)
Q Consensus 804 l~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~ 882 (983)
++.++.+||+|||+++...... ......||+.|+|||.+.+ ..++.++||||+||++|+|++|+.
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~~--------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~ 232 (362)
T 3pg1_A 167 LADNNDITICDFNLAREDTADA--------------NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKA 232 (362)
T ss_dssp ECTTCCEEECCTTC-----------------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSC
T ss_pred EcCCCCEEEEecCccccccccc--------------ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCC
Confidence 9999999999999997543221 1123468999999999887 678999999999999999999999
Q ss_pred CCCcccCCCCchHHHHHhhCCCCCcH-------HHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCH
Q 042568 883 PTDVLFHDGSSLHEWVKRHYPHRLDP-------IVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSM 955 (983)
Q Consensus 883 p~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~ 955 (983)
||..... ...+...+.......... .....+......................+.+++.+|++.||++|||+
T Consensus 233 pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~ 311 (362)
T 3pg1_A 233 LFRGSTF-YNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRIST 311 (362)
T ss_dssp SCCCSSH-HHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred CCCCCCH-HHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCH
Confidence 9864211 111112211111111110 11111111111111111111112345678999999999999999999
Q ss_pred HHHHHH
Q 042568 956 LDVAHE 961 (983)
Q Consensus 956 ~evl~~ 961 (983)
+|++++
T Consensus 312 ~ell~h 317 (362)
T 3pg1_A 312 EQALRH 317 (362)
T ss_dssp HHHHTS
T ss_pred HHHHcC
Confidence 999986
No 220
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=6.3e-37 Score=358.85 Aligned_cols=254 Identities=25% Similarity=0.360 Sum_probs=205.4
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc-CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT-TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
.++|.+.++||+|+||+||+|... +++.||||++.... .......+.+|++++++++||||+++++++......++||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 100 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG 100 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence 357889999999999999999975 78899999986543 2234678999999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeC---CCCCEEEcccccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLD---EDLTALVADFGIAKL 820 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~---~~~~~kl~Dfgla~~ 820 (983)
||+++|+|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+||+++ .++.+||+|||+++.
T Consensus 101 e~~~~~~L~~~~~~~----~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 173 (486)
T 3mwu_A 101 ELYTGGELFDEIIKR----KRFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173 (486)
T ss_dssp CCCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEESSSSTTCCEEECSCSCTTT
T ss_pred EcCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEEECCcCeE
Confidence 999999999888653 45899999999999999999999996 99999999999995 566899999999986
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHh
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~ 900 (983)
..... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||.... .
T Consensus 174 ~~~~~--------------~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~-----~------ 227 (486)
T 3mwu_A 174 FQQNT--------------KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN-----E------ 227 (486)
T ss_dssp BCCC------------------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSS-----H------
T ss_pred CCCCC--------------ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCC-----H------
Confidence 64321 1123479999999999876 58999999999999999999999985321 1
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
.+.+........... ...|...+.++.+++.+|++.||++|||+.|++++-.
T Consensus 228 ------~~~~~~i~~~~~~~~-----~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp~ 279 (486)
T 3mwu_A 228 ------YDILKRVETGKYAFD-----LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPW 279 (486)
T ss_dssp ------HHHHHHHHHTCCCSC-----SGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCHH
T ss_pred ------HHHHHHHHhCCCCCC-----CcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCHh
Confidence 111222221211111 1224456678999999999999999999999998744
No 221
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=2.6e-37 Score=337.70 Aligned_cols=252 Identities=24% Similarity=0.338 Sum_probs=205.3
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|...+.||+|+||.||+|... +++.||+|++.... .....+.+.+|++++++++||||+++++++...+..++||
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 94 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 94 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence 56888999999999999999976 57889999986553 2234678899999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++++|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||.++....
T Consensus 95 e~~~~~~L~~~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~ 167 (294)
T 2rku_A 95 ELCRRRSLLELHKR----RKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEY 167 (294)
T ss_dssp ECCTTCBHHHHHHH----HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred ecCCCCCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEcCCCCEEEEeccCceeccc
Confidence 99999999998764 346899999999999999999999996 99999999999999999999999999987643
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
... ......||+.|+|||.+.+..++.++||||+|+++|+|++|+.||.... ..+.
T Consensus 168 ~~~-------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~-----~~~~------ 223 (294)
T 2rku_A 168 DGE-------------RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC-----LKET------ 223 (294)
T ss_dssp TTC-------------CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS-----HHHH------
T ss_pred Ccc-------------ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-----HHHH------
Confidence 211 1123468999999999999889999999999999999999999986421 1111
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGR 964 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 964 (983)
......... ..+ .....++.+++.+|++.||++|||++|++++-.-
T Consensus 224 ------~~~~~~~~~--~~~-------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~~~ 269 (294)
T 2rku_A 224 ------YLRIKKNEY--SIP-------KHINPVAASLIQKMLQTDPTARPTINELLNDEFF 269 (294)
T ss_dssp ------HHHHHTTCC--CCC-------TTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHH
T ss_pred ------HHHHhhccC--CCc-------cccCHHHHHHHHHHcccChhhCcCHHHHhhChhe
Confidence 111111100 111 1234578899999999999999999999987543
No 222
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.4e-37 Score=343.95 Aligned_cols=277 Identities=23% Similarity=0.293 Sum_probs=198.1
Q ss_pred HHhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc----chhHHHHHHHHHHHhcCCCCccceeeEEecCCc
Q 042568 664 EATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG----EITGSFKRECQILKRIRHRNLIRIITICSKPDF 738 (983)
Q Consensus 664 ~~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 738 (983)
...++|...+.||+|+||.||+|... +++.||||+++..... .....+.+|++++++++||||+++++++...+.
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN 86 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence 34578999999999999999999965 6899999998654322 123578899999999999999999999999999
Q ss_pred eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccc
Q 042568 739 KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIA 818 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla 818 (983)
.++||||+++ +|.+++... ...+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||++
T Consensus 87 ~~lv~e~~~~-~l~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a 159 (346)
T 1ua2_A 87 ISLVFDFMET-DLEVIIKDN---SLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLA 159 (346)
T ss_dssp CEEEEECCSE-EHHHHHTTC---CSSCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCGGG
T ss_pred eEEEEEcCCC-CHHHHHHhc---CcCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEEcCCCCEEEEecccc
Confidence 9999999986 787777643 345888999999999999999999996 999999999999999999999999999
Q ss_pred ccccCCcccccccCCCCccccccCccccccccccccccCCC-CCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHH
Q 042568 819 KLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK-RASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEW 897 (983)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~ 897 (983)
+....... ......||+.|+|||.+.+. .++.++||||+||++|||++|..||..... ...+...
T Consensus 160 ~~~~~~~~-------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~-~~~~~~i 225 (346)
T 1ua2_A 160 KSFGSPNR-------------AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSD-LDQLTRI 225 (346)
T ss_dssp STTTSCCC-------------CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHH
T ss_pred eeccCCcc-------------cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCH-HHHHHHH
Confidence 87643211 11234689999999998764 588999999999999999999999753210 1111111
Q ss_pred HHhhCCCC---CcHHHHHHHhhc-CCCCCc-cccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 898 VKRHYPHR---LDPIVEKAIAKY-APQHMP-IYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 898 ~~~~~~~~---~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
........ .... .. .... .....+ ......+.....++.+++.+|++.||++|||++|++++-.
T Consensus 226 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~ 294 (346)
T 1ua2_A 226 FETLGTPTEEQWPDM-CS-LPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKY 294 (346)
T ss_dssp HHHHCCCCTTTSSST-TS-STTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGG
T ss_pred HHHcCCCChhhhhhh-cc-CcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcChh
Confidence 11110000 0000 00 0000 000000 0001112334578999999999999999999999998754
No 223
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=1e-36 Score=331.27 Aligned_cols=249 Identities=24% Similarity=0.376 Sum_probs=203.3
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|...+.||+|+||.||+|... +++.||||++..... ......+.+|++++++++||||+++++++...+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 56888999999999999999976 577899999865421 223567899999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++|+|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||++.....
T Consensus 94 e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~ 166 (284)
T 2vgo_A 94 EFAPRGELYKELQKH----GRFDEQRSATFMEELADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWSVHAPS 166 (284)
T ss_dssp CCCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTCCEEECCCTTCEECSS
T ss_pred EeCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEEcCCCCEEEecccccccCcc
Confidence 999999999988753 35899999999999999999999996 99999999999999999999999999875542
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
.. .....||+.|+|||.+.+..++.++||||+|+++|+|++|+.||.... ...
T Consensus 167 ~~---------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~~~------- 219 (284)
T 2vgo_A 167 LR---------------RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPS-----HTE------- 219 (284)
T ss_dssp SC---------------BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS-----HHH-------
T ss_pred cc---------------cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCC-----HhH-------
Confidence 11 122468999999999999999999999999999999999999986321 111
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
.... +.... ...+ ...+.++.+++.+|++.||++||+++|++++-.
T Consensus 220 -----~~~~-~~~~~-~~~~-------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h~~ 265 (284)
T 2vgo_A 220 -----THRR-IVNVD-LKFP-------PFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPW 265 (284)
T ss_dssp -----HHHH-HHTTC-CCCC-------TTSCHHHHHHHHHHSCSSGGGSCCHHHHHTCHH
T ss_pred -----HHHH-Hhccc-cCCC-------CcCCHHHHHHHHHHhhcCHhhCCCHHHHhhCHH
Confidence 1111 11111 0111 123467889999999999999999999998543
No 224
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=5.7e-37 Score=353.19 Aligned_cols=287 Identities=20% Similarity=0.254 Sum_probs=202.0
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecC-----Cc
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKP-----DF 738 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 738 (983)
.++|.+.+.||+|+||.||+|... +++.||||++..... ....+++.+|++++++++||||+++++++... ..
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 468889999999999999999965 578899999965432 23457899999999999999999999999766 56
Q ss_pred eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccc
Q 042568 739 KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIA 818 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla 818 (983)
.++||||++ |+|.+++.. ...+++..++.++.||++||+|||+.+ |+||||||+|||++.++.+||+|||+|
T Consensus 105 ~~lv~e~~~-~~L~~~~~~----~~~l~~~~~~~i~~qil~aL~~LH~~g---ivHrDlkp~NILl~~~~~~kL~DFGla 176 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKT----PIFLTEEHIKTILYNLLLGENFIHESG---IIHRDLKPANCLLNQDCSVKVCDFGLA 176 (432)
T ss_dssp EEEEEECCS-EEHHHHHHS----SCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred EEEEEecCC-cCHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHeEECCCCCEEEccCCCc
Confidence 899999997 599888864 345899999999999999999999996 999999999999999999999999999
Q ss_pred ccccCCccccccc---------CCCCccccccCcccccccccccccc-CCCCCCccchhHHHHHHHHHHHhCCCCCCccc
Q 042568 819 KLVKGIDESVNCA---------NDSMSFTSTDGLLCGSVGYIAPEYG-MGKRASTHGDVYSFGVLLLEIVTGRRPTDVLF 888 (983)
Q Consensus 819 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~ 888 (983)
+............ .............+||+.|+|||++ .+..++.++||||+||++|||++|..||....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~ 256 (432)
T 3n9x_A 177 RTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDP 256 (432)
T ss_dssp EEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSG
T ss_pred ccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccccccc
Confidence 9765432110000 0000001123456899999999986 55679999999999999999999776664321
Q ss_pred CCCCc---------------------------hHHHHHhhCCC-------CCcHHHHHHHhhcCCCCCccccccchHHHH
Q 042568 889 HDGSS---------------------------LHEWVKRHYPH-------RLDPIVEKAIAKYAPQHMPIYYNKVWSDVV 934 (983)
Q Consensus 889 ~~~~~---------------------------l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (983)
.++.. +..++...-.+ ...+...+.+.... ...+......+....
T Consensus 257 ~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s 335 (432)
T 3n9x_A 257 TNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFP-HRKPINLKQKYPSIS 335 (432)
T ss_dssp GGCCCSCCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSC-CCCCCCHHHHSTTSC
T ss_pred ccccccCCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCC-CCCCCCHHHHCCCCC
Confidence 11100 00000000000 00111112221111 111111122223456
Q ss_pred HHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 935 LELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 935 ~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.++.+++.+|++.||++|||++|++++
T Consensus 336 ~~~~dLl~~mL~~dP~~R~ta~e~L~H 362 (432)
T 3n9x_A 336 DDGINLLESMLKFNPNKRITIDQALDH 362 (432)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHHTC
T ss_pred HHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence 789999999999999999999999986
No 225
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.1e-37 Score=348.18 Aligned_cols=257 Identities=21% Similarity=0.298 Sum_probs=201.8
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHH-HHhcCCCCccceeeEEecCCceeEEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQI-LKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
.++|...+.||+|+||.||+|.. .+|+.||||++..........++..|..+ ++.++||||+++++++...+..++||
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 129 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 129 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEH
Confidence 45788889999999999999996 47889999999766554445666667666 67789999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhcc-CCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHH-SPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~-~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
||+++ +|.+++.........+++..++.++.|+++||+|||++ + |+||||||+||+++.++.+||+|||+++...
T Consensus 130 e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 205 (340)
T 3an0_A 130 ELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS---VIHRDVKPSNVLINALGQVKMCDFGISGYLV 205 (340)
T ss_dssp CCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHTC---CCCCSCCSTTEEECSTTCEEECCCSHHHHHS
T ss_pred HHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeeCCCceecc
Confidence 99985 89888764332356799999999999999999999986 5 9999999999999999999999999998764
Q ss_pred CCcccccccCCCCccccccCccccccccccccccC----CCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHH
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM----GKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWV 898 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~ 898 (983)
.... .....||+.|+|||++. +..++.++|||||||++|||++|+.||+..... .
T Consensus 206 ~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~---~---- 264 (340)
T 3an0_A 206 DSVA--------------KTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTP---F---- 264 (340)
T ss_dssp CHHH--------------HHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCH---H----
T ss_pred cccc--------------cccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccch---H----
Confidence 3211 11236999999999964 347899999999999999999999998642111 0
Q ss_pred HhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 899 KRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
..+...+...... .+ ...++.++.+++.+|++.||++||++.|++++-.
T Consensus 265 ---------~~~~~~~~~~~~~-~~------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~ 313 (340)
T 3an0_A 265 ---------QQLKQVVEEPSPQ-LP------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPF 313 (340)
T ss_dssp ---------HHHHHHHHSCCCC-CC------GGGSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHH
T ss_pred ---------HHHHHHhcCCCCC-CC------cccCCHHHHHHHHHHccCCcccCcCHHHHhcCcC
Confidence 1111111111111 00 1224567899999999999999999999998543
No 226
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=2.8e-37 Score=343.52 Aligned_cols=273 Identities=23% Similarity=0.349 Sum_probs=201.9
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-chhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-EITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
++|...+.||+|+||.||+|... +++.||||++...... ...+.+.+|++++++++||||+++++++...+..++|||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 104 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE 104 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence 56888999999999999999975 5889999998655433 245668899999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|++++++.++... ...+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++.....
T Consensus 105 ~~~~~~l~~~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 177 (331)
T 4aaa_A 105 FVDHTILDDLELF----PNGLDYQVVQKYLFQIINGIGFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAP 177 (331)
T ss_dssp CCSEEHHHHHHHS----TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred cCCcchHHHHHhh----ccCCCHHHHHHHHHHHHHHHHHHHHCC---EEccCcChheEEEcCCCcEEEEeCCCceeecCC
Confidence 9999999887653 345899999999999999999999996 999999999999999999999999999865432
Q ss_pred cccccccCCCCccccccCccccccccccccccCCC-CCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK-RASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
.. ......||+.|+|||.+.+. .++.++||||+|+++|+|++|+.||..... ...+...+.....
T Consensus 178 ~~-------------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~~~~~~~~~~ 243 (331)
T 4aaa_A 178 GE-------------VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSD-IDQLYHIMMCLGN 243 (331)
T ss_dssp -------------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCS
T ss_pred cc-------------ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCc-HHHHHHHHHHhCC
Confidence 21 11224689999999998875 789999999999999999999999864211 1111111111110
Q ss_pred CCCcHHHHHHHhh---cCCCCCc-----cccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 904 HRLDPIVEKAIAK---YAPQHMP-----IYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 904 ~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
. .+........ ......+ ......+..++.++.+++.+|++.||++|||++|++++=
T Consensus 244 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp 308 (331)
T 4aaa_A 244 -L-IPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHD 308 (331)
T ss_dssp -C-CHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSH
T ss_pred -C-ChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcCc
Confidence 0 0000100000 0000001 011111223567899999999999999999999999764
No 227
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=1.6e-37 Score=338.61 Aligned_cols=256 Identities=21% Similarity=0.254 Sum_probs=188.8
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhH-HHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITG-SFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~-~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
.++|+..+.||+|+||.||+|.. .+++.||||++.......... .+.++...++.++||||+++++++...+..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 35788899999999999999996 478889999997654333333 3444555578889999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhcc-CCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHH-SPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~-~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
||++ |+|.+++.........+++..++.++.|+++||+|||++ + |+||||||+||+++.++.+||+|||+++...
T Consensus 86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 161 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS---VIHRDVKPSNVLINALGQVKMCDFGISGYLV 161 (290)
T ss_dssp ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSC---CCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence 9998 488777764333356799999999999999999999997 6 9999999999999999999999999998664
Q ss_pred CCcccccccCCCCccccccCcccccccccccccc----CCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHH
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYG----MGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWV 898 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~ 898 (983)
.... .....||+.|+|||.+ .+..++.++||||+|+++|||++|+.||+......
T Consensus 162 ~~~~--------------~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------- 220 (290)
T 3fme_A 162 DDVA--------------KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPF------- 220 (290)
T ss_dssp ----------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHH-------
T ss_pred cccc--------------ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchH-------
Confidence 3211 1223699999999996 56678999999999999999999999986321110
Q ss_pred HhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 899 KRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
..+...+........ ....+.++.+++.+|++.||++|||+.|++++-
T Consensus 221 ---------~~~~~~~~~~~~~~~-------~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp 268 (290)
T 3fme_A 221 ---------QQLKQVVEEPSPQLP-------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQHP 268 (290)
T ss_dssp ---------HHHHHHHHSCCCCCC-------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTSH
T ss_pred ---------HHHHHHhccCCCCcc-------cccCCHHHHHHHHHHhhcChhhCcCHHHHHhCc
Confidence 111111111111110 112456789999999999999999999999854
No 228
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=2.1e-38 Score=359.00 Aligned_cols=250 Identities=16% Similarity=0.161 Sum_probs=191.9
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeeccc--CcchhHHHHHHHH---HHHhcCCCCcccee-------eE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTT--TGEITGSFKRECQ---ILKRIRHRNLIRII-------TI 732 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~--~~~~~~~~~~E~~---~l~~l~h~niv~l~-------~~ 732 (983)
.++|...+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|++ ++++++||||++++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 35688889999999999999995 568999999997542 2234678999995 45555899999998 66
Q ss_pred EecCC-----------------ceeEEEecccCcccccccccccCc---CCCCCHHHHHHHHHHHHHHHHHHhccCCCCe
Q 042568 733 CSKPD-----------------FKALVLPLMSNGSLENHLYPSHGL---SHGLDLIQLVKICSDVAEGVAYLHHHSPIKV 792 (983)
Q Consensus 733 ~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~~~---~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~i 792 (983)
+..++ ..++||||+ +|+|.+++...... ...+++..++.|+.|+++||+|||+++ |
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG---L 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT---E
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCC---e
Confidence 65553 278999999 58999998754221 123446888999999999999999996 9
Q ss_pred EeecCCCCCeEeCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCC-----------CC
Q 042568 793 VHCDLKPSNILLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK-----------RA 861 (983)
Q Consensus 793 vH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~ 861 (983)
+||||||+|||++.++.+||+|||+|+.... ......| +.|+|||++.+. .+
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~----------------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~ 290 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----------------RVVSSVS-RGFEPPELEARRATISYHRDRRTLM 290 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC----------------EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEEC
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC----------------cccCCCC-cCccChhhhcccccccccccccccC
Confidence 9999999999999999999999999985432 1122467 999999999887 89
Q ss_pred CccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHH
Q 042568 862 STHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELG 941 (983)
Q Consensus 862 ~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 941 (983)
+.++|||||||++|||++|+.||........ ... ... .+..++.++.+++
T Consensus 291 ~~~~DvwSlG~il~elltg~~Pf~~~~~~~~-------------~~~--------~~~---------~~~~~~~~~~~li 340 (377)
T 3byv_A 291 TFSFDAWALGLVIYWIWCADLPITKDAALGG-------------SEW--------IFR---------SCKNIPQPVRALL 340 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCC------CC-------------SGG--------GGS---------SCCCCCHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHCCCCCcccccccc-------------hhh--------hhh---------hccCCCHHHHHHH
Confidence 9999999999999999999999864211100 000 000 0012346789999
Q ss_pred hhhcCCCCCCCCCHHHHHHH--HHHhH
Q 042568 942 LLCTQYNPSTRPSMLDVAHE--MGRLK 966 (983)
Q Consensus 942 ~~cl~~dP~~RPs~~evl~~--L~~~~ 966 (983)
.+||+.||++|||+.|++++ ++.+.
T Consensus 341 ~~~L~~dp~~Rpt~~e~l~hp~f~~~~ 367 (377)
T 3byv_A 341 EGFLRYPKEDRLLPLQAMETPEYEQLR 367 (377)
T ss_dssp HHHTCSSGGGCCCHHHHHTSHHHHHHH
T ss_pred HHHcCCCchhCCCHHHHhhChHHHHHH
Confidence 99999999999999999974 44443
No 229
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=3.5e-37 Score=361.19 Aligned_cols=254 Identities=26% Similarity=0.356 Sum_probs=207.2
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
.++|...++||+|+||.||+|... +++.||||++..... ......+.+|++++++++||||+++++++......++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 356888999999999999999975 789999999865532 23467899999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe---CCCCCEEEccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL---DEDLTALVADFGIAK 819 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl---~~~~~~kl~Dfgla~ 819 (983)
|||+++|+|.+++.. ...+++..++.++.|+++||+|||+++ |+||||||+||++ +.++.+||+|||+++
T Consensus 105 ~e~~~~~~L~~~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~ 177 (484)
T 3nyv_A 105 GEVYTGGELFDEIIS----RKRFSEVDAARIIRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLST 177 (484)
T ss_dssp ECCCCSCBHHHHHHT----CSCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCTTHHH
T ss_pred EecCCCCCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEecCCCCCcEEEEeeeeeE
Confidence 999999999988864 346899999999999999999999996 9999999999999 567899999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
....... .....||+.|+|||.+.+ .++.++||||+||++|+|++|+.||.... .
T Consensus 178 ~~~~~~~--------------~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~-----~----- 232 (484)
T 3nyv_A 178 HFEASKK--------------MKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGAN-----E----- 232 (484)
T ss_dssp HBCCCCS--------------HHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----H-----
T ss_pred Ecccccc--------------cccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCC-----H-----
Confidence 7653221 122469999999999876 68999999999999999999999986321 1
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
.+............. ...|...+.++.+++.+|++.||++|||+.|+++|-.
T Consensus 233 -------~~~~~~i~~~~~~~~-----~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~ 284 (484)
T 3nyv_A 233 -------YDILKKVEKGKYTFE-----LPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEW 284 (484)
T ss_dssp -------HHHHHHHHHCCCCCC-----SGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHH
T ss_pred -------HHHHHHHHcCCCCCC-----CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhChh
Confidence 111111111111111 1224456778999999999999999999999998654
No 230
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=8.4e-37 Score=342.66 Aligned_cols=278 Identities=19% Similarity=0.250 Sum_probs=201.2
Q ss_pred CCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCc-chhHHHHHHHHHHHhcCCCCccceeeEEecC--------
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTG-EITGSFKRECQILKRIRHRNLIRIITICSKP-------- 736 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-------- 736 (983)
++|...+.||+|+||.||+|+. .+++.||||++...... .....+.+|++++++++||||+++++++...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 96 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 96 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence 5788899999999999999997 47899999998655432 2356788999999999999999999998763
Q ss_pred CceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccc
Q 042568 737 DFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFG 816 (983)
Q Consensus 737 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfg 816 (983)
+..++||||+++ ++.+.+... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||
T Consensus 97 ~~~~lv~e~~~~-~l~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg 169 (351)
T 3mi9_A 97 GSIYLVFDFCEH-DLAGLLSNV---LVKFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFG 169 (351)
T ss_dssp CEEEEEEECCSE-EHHHHHHCT---TSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCT
T ss_pred ceEEEEEeccCC-CHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCCEEEccch
Confidence 467999999985 666666533 345899999999999999999999996 9999999999999999999999999
Q ss_pred ccccccCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchH
Q 042568 817 IAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLH 895 (983)
Q Consensus 817 la~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~ 895 (983)
+|+.+....... ........||+.|+|||.+.+ ..++.++||||+||++|||++|+.||..... ....
T Consensus 170 ~a~~~~~~~~~~---------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--~~~~ 238 (351)
T 3mi9_A 170 LARAFSLAKNSQ---------PNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTE--QHQL 238 (351)
T ss_dssp TCEECCCCSSSS---------CCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHH
T ss_pred hccccccccccc---------ccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCCh--HHHH
Confidence 998765332211 112233578999999999876 4579999999999999999999999864211 1111
Q ss_pred HHHHh---hCCCCCcHHHHHHHhhcCCCCCccccccchHH------HHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 896 EWVKR---HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSD------VVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 896 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
..+.. ..+....+..+..- ................+ ...++.+++.+|++.||++|||++|++++-.
T Consensus 239 ~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~ 314 (351)
T 3mi9_A 239 ALISQLCGSITPEVWPNVDNYE-LYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDF 314 (351)
T ss_dssp HHHHHHHCCCCTTTSTTGGGCG-GGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred HHHHHHhCCCChhhccccccch-hhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCCC
Confidence 11111 01111000000000 00000000000000111 1356889999999999999999999998643
No 231
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=4.5e-37 Score=342.22 Aligned_cols=252 Identities=24% Similarity=0.342 Sum_probs=205.4
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
.++|...+.||+|+||.||+|... +++.||+|++.... .....+.+.+|+++++.++||||+++++++...+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 357888999999999999999975 57889999986553 223467889999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|||+++++|.+++.. ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++...
T Consensus 120 ~e~~~~~~L~~~~~~----~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 192 (335)
T 2owb_A 120 LELCRRRSLLELHKR----RKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVE 192 (335)
T ss_dssp ECCCTTCBHHHHHHH----HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EecCCCCCHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHHHCC---CEecCCCchhEEEcCCCCEEEeeccCceecc
Confidence 999999999998764 346899999999999999999999996 9999999999999999999999999998764
Q ss_pred CCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
.... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||.... ..+.
T Consensus 193 ~~~~-------------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~~~~----- 249 (335)
T 2owb_A 193 YDGE-------------RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC-----LKET----- 249 (335)
T ss_dssp STTC-------------CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS-----HHHH-----
T ss_pred cCcc-------------cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCC-----HHHH-----
Confidence 3211 1123469999999999999899999999999999999999999986321 1111
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
......... ..+ .....++.+++.+|++.||++|||++|++++-.
T Consensus 250 -------~~~~~~~~~--~~~-------~~~~~~~~~li~~~l~~dp~~Rps~~ell~~~~ 294 (335)
T 2owb_A 250 -------YLRIKKNEY--SIP-------KHINPVAASLIQKMLQTDPTARPTINELLNDEF 294 (335)
T ss_dssp -------HHHHHHTCC--CCC-------TTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHH
T ss_pred -------HHHHhcCCC--CCC-------ccCCHHHHHHHHHHccCChhHCcCHHHHhcCcc
Confidence 111111111 111 113457889999999999999999999998644
No 232
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=6.9e-37 Score=331.09 Aligned_cols=249 Identities=29% Similarity=0.457 Sum_probs=196.3
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|.+.+.||+|+||.||+|... +++.||||++.... ..+..+.+.+|+++++.++||||+++++++...+..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM 90 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence 57888999999999999999976 78999999986543 2234578899999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++++|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||++.....
T Consensus 91 e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~ 163 (276)
T 2h6d_A 91 EYVSGGELFDYICKH----GRVEEMEARRLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSD 163 (276)
T ss_dssp ECCCSCBHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHHC---SSCCCCCGGGEEECTTSCEEECCCCGGGCCCC
T ss_pred eccCCCcHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChhhEEECCCCCEEEeecccccccCC
Confidence 999999999998653 35899999999999999999999996 99999999999999999999999999986643
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCC-CccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRA-STHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHY 902 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~ 902 (983)
... .....||+.|+|||.+.+..+ +.++||||+|+++|+|++|+.||+.. ....
T Consensus 164 ~~~--------------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~------ 218 (276)
T 2h6d_A 164 GEF--------------LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE-----HVPT------ 218 (276)
T ss_dssp ---------------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHH------
T ss_pred Ccc--------------eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC-----cHHH------
Confidence 211 122468999999999988765 68999999999999999999998632 1111
Q ss_pred CCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 903 PHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
..+....... ..+ .....++.+++.+|++.||++|||++|++++-
T Consensus 219 ------~~~~~~~~~~--~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h~ 263 (276)
T 2h6d_A 219 ------LFKKIRGGVF--YIP-------EYLNRSVATLLMHMLQVDPLKRATIKDIREHE 263 (276)
T ss_dssp ------HHHHHHHCCC--CCC-------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSH
T ss_pred ------HHHHhhcCcc--cCc-------hhcCHHHHHHHHHHccCChhhCCCHHHHHhCh
Confidence 1111111111 011 11346788999999999999999999999863
No 233
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=4e-37 Score=335.76 Aligned_cols=261 Identities=25% Similarity=0.334 Sum_probs=197.2
Q ss_pred CCCCCCCccccCCcEeEEEEEEC--CCc--EEEEEEeeccc--CcchhHHHHHHHHHHHhcCCCCccceeeEEecCCcee
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ--DNT--RIAVKVLDLTT--TGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKA 740 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~--~~~--~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 740 (983)
++|...+.||+|+||.||+|.+. +++ .||||+++... ..+..+++.+|++++++++||||+++++++.... .+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~ 96 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK 96 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence 56888999999999999999853 333 58999986543 2345678999999999999999999999998765 78
Q ss_pred EEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccc
Q 042568 741 LVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKL 820 (983)
Q Consensus 741 lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~ 820 (983)
+|+||+++++|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+++.
T Consensus 97 ~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~ 170 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKH---QGHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRA 170 (291)
T ss_dssp EEEECCTTCBHHHHHHHH---GGGSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred eeEecccCCCHHHHHHhc---cCCcCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEEcCCCCEEEcccccccc
Confidence 999999999999998753 245899999999999999999999996 99999999999999999999999999987
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHH
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~ 899 (983)
........ .......+|..|+|||.+.+..++.++||||||+++|||++ |+.||.... ..+
T Consensus 171 ~~~~~~~~----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~-----~~~--- 232 (291)
T 1u46_A 171 LPQNDDHY----------VMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN-----GSQ--- 232 (291)
T ss_dssp CCC-CCEE----------EC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC-----HHH---
T ss_pred ccccccch----------hhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCC-----HHH---
Confidence 65432211 11223467889999999988889999999999999999999 999986421 111
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
.............. ...++.++.+++.+|++.||++|||+.+++++|+++...
T Consensus 233 ---------~~~~~~~~~~~~~~-------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 233 ---------ILHKIDKEGERLPR-------PEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp ---------HHHHHHTSCCCCCC-------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred ---------HHHHHHccCCCCCC-------CcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 11111111111000 123457799999999999999999999999999988654
No 234
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=5.2e-37 Score=349.03 Aligned_cols=270 Identities=22% Similarity=0.307 Sum_probs=197.0
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCC------cee
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPD------FKA 740 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~~~ 740 (983)
.+|...++||+|+||.||+|+...+..||+|++..... ...+|+++++.++||||+++++++.... ..+
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~-----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR-----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT-----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc-----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 46888999999999999999988777799998854322 2247999999999999999999985433 378
Q ss_pred EEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeC-CCCCEEEccccccc
Q 042568 741 LVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLD-EDLTALVADFGIAK 819 (983)
Q Consensus 741 lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~-~~~~~kl~Dfgla~ 819 (983)
+||||++++.+..... .......+++..++.++.|+++||+|||+.+ |+||||||+|||++ .++.+||+|||+|+
T Consensus 115 lv~e~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~kL~DFG~a~ 190 (394)
T 4e7w_A 115 LVLEYVPETVYRASRH-YAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG---ICHRDIKPQNLLLDPPSGVLKLIDFGSAK 190 (394)
T ss_dssp EEEECCSEEHHHHHHH-HHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred EEeeccCccHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence 9999998754433322 2222457999999999999999999999996 99999999999999 79999999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCC-CCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK-RASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWV 898 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~ 898 (983)
....... .....||+.|+|||.+.+. .++.++||||+||++|||++|+.||..... ...+..++
T Consensus 191 ~~~~~~~--------------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~-~~~l~~i~ 255 (394)
T 4e7w_A 191 ILIAGEP--------------NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESG-IDQLVEII 255 (394)
T ss_dssp ECCTTCC--------------CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHH
T ss_pred cccCCCC--------------CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHH
Confidence 7643221 1224689999999998765 589999999999999999999999864211 11122222
Q ss_pred HhhCCCCCcHHHHHHHhhcCCCCCccccccchH-----HHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 899 KRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWS-----DVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
...-... .+.+............+......+. ..+.++.+++.+|++.||++|||+.|+++|
T Consensus 256 ~~~g~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 322 (394)
T 4e7w_A 256 KVLGTPS-REQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH 322 (394)
T ss_dssp HHHCCCC-HHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred HHhCCCC-HHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence 2211111 1111111111111111111111121 245689999999999999999999999986
No 235
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=1.2e-37 Score=346.04 Aligned_cols=273 Identities=22% Similarity=0.287 Sum_probs=193.6
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-chhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-EITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
..++|...+.||+|+||.||+|... +++.||||+++..... .....+.+|++++++++||||+++++++...+..++|
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 111 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI 111 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence 3468999999999999999999955 6888999999655432 2356778999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe-----CCCCCEEEccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL-----DEDLTALVADFGI 817 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl-----~~~~~~kl~Dfgl 817 (983)
|||+++ +|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+||++ +.++.+||+|||+
T Consensus 112 ~e~~~~-~L~~~~~~~----~~~~~~~~~~i~~ql~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~ 183 (329)
T 3gbz_A 112 FEYAEN-DLKKYMDKN----PDVSMRVIKSFLYQLINGVNFCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183 (329)
T ss_dssp EECCSE-EHHHHHHHC----TTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred EecCCC-CHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHhCC---EECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence 999984 998888653 45899999999999999999999996 9999999999999 4556699999999
Q ss_pred cccccCCcccccccCCCCccccccCccccccccccccccCCC-CCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHH
Q 042568 818 AKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK-RASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHE 896 (983)
Q Consensus 818 a~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~ 896 (983)
++....... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||..... ...+..
T Consensus 184 a~~~~~~~~-------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~~~ 249 (329)
T 3gbz_A 184 ARAFGIPIR-------------QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSE-IDQLFK 249 (329)
T ss_dssp HHHHC------------------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHH
T ss_pred ccccCCccc-------------ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCH-HHHHHH
Confidence 987643211 11224689999999999874 489999999999999999999999864211 011111
Q ss_pred HHHhhC-CCC-CcHHHHHHHhhcCCCCCccccccch-----HHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 897 WVKRHY-PHR-LDPIVEKAIAKYAPQHMPIYYNKVW-----SDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 897 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.+.... +.. ..+.... ... .....+....... .....++.+++.+|++.||++|||++|++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 319 (329)
T 3gbz_A 250 IFEVLGLPDDTTWPGVTA-LPD-WKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEH 319 (329)
T ss_dssp HHHHHCCCCTTTSTTGGG-STT-CCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHHHhCCCchhhhhhhhh-hhh-hhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCC
Confidence 111100 000 0000000 000 0000000000001 1134678999999999999999999999875
No 236
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=9.6e-37 Score=357.85 Aligned_cols=251 Identities=24% Similarity=0.347 Sum_probs=199.2
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
++|...+.||+|+||.||+|+.. ++..||||++..... ......+.+|+++++.++||||+++++++......++|||
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 116 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME 116 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence 46888999999999999999975 688899999875532 2346788999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC---CCCEEEccccccccc
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE---DLTALVADFGIAKLV 821 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~---~~~~kl~Dfgla~~~ 821 (983)
|+++|+|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+|||++. ++.+||+|||+++..
T Consensus 117 ~~~~g~L~~~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~ 189 (494)
T 3lij_A 117 CYKGGELFDEIIH----RMKFNEVDAAVIIKQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVF 189 (494)
T ss_dssp CCCSCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred cCCCCcHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChhhEEEeCCCCCCcEEEEECCCCeEC
Confidence 9999999888864 345899999999999999999999996 999999999999976 455999999999876
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRH 901 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~ 901 (983)
..... .....||+.|+|||++. ..++.++||||+||++|+|++|+.||.... .
T Consensus 190 ~~~~~--------------~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~-----~------- 242 (494)
T 3lij_A 190 ENQKK--------------MKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQT-----D------- 242 (494)
T ss_dssp BTTBC--------------BCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS-----H-------
T ss_pred CCCcc--------------ccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCC-----H-------
Confidence 53221 12346999999999876 468999999999999999999999986321 1
Q ss_pred CCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 902 YPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.+............ ....|...+.++.+++.+|++.||++|||+.|++++
T Consensus 243 -----~~~~~~i~~~~~~~-----~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 243 -----QEILRKVEKGKYTF-----DSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp -----HHHHHHHHHTCCCC-----CSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred -----HHHHHHHHhCCCCC-----CchhcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence 11122211111111 112234566789999999999999999999999976
No 237
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=333.82 Aligned_cols=253 Identities=19% Similarity=0.296 Sum_probs=199.8
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
..++|...+.||+|+||.||+|... +++.||||.+.... ....+.+|++++++++||||+++++++...+..++||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 103 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES---DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVM 103 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS---CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH---HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEe
Confidence 3467889999999999999999975 58899999997543 3477899999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++++|.+++... ...+++..++.++.|+++||.|||+.+ |+||||||+||+++.++.+||+|||.+.....
T Consensus 104 e~~~~~~L~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~ 177 (314)
T 3com_A 104 EYCGAGSVSDIIRLR---NKTLTEDEIATILQSTLKGLEYLHFMR---KIHRDIKAGNILLNTEGHAKLADFGVAGQLTD 177 (314)
T ss_dssp ECCTTEEHHHHHHHH---TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECBT
T ss_pred ecCCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCcCHHHEEECCCCCEEEeecccchhhhh
Confidence 999999999988632 356899999999999999999999996 99999999999999999999999999986643
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
... ......||+.|+|||.+.+..++.++||||||+++|+|++|+.||.... ....
T Consensus 178 ~~~-------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~------- 233 (314)
T 3com_A 178 TMA-------------KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIH----PMRA------- 233 (314)
T ss_dssp TBS-------------CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSC----HHHH-------
T ss_pred hcc-------------ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCC----hHHH-------
Confidence 211 1123468999999999999999999999999999999999999986321 0000
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
.. .+......... .....+.++.+++.+|++.||++|||+.|++++-
T Consensus 234 ------~~-~~~~~~~~~~~-----~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~~ 280 (314)
T 3com_A 234 ------IF-MIPTNPPPTFR-----KPELWSDNFTDFVKQCLVKSPEQRATATQLLQHP 280 (314)
T ss_dssp ------HH-HHHHSCCCCCS-----SGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTSH
T ss_pred ------HH-HHhcCCCcccC-----CcccCCHHHHHHHHHHccCChhhCcCHHHHHhCH
Confidence 00 01111110000 0122346788999999999999999999999743
No 238
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=9.1e-37 Score=358.98 Aligned_cols=254 Identities=24% Similarity=0.346 Sum_probs=202.2
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc------------chhHHHHHHHHHHHhcCCCCccceeeE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG------------EITGSFKRECQILKRIRHRNLIRIITI 732 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~------------~~~~~~~~E~~~l~~l~h~niv~l~~~ 732 (983)
.++|.+.++||+|+||+||+|... +++.||||++...... ...+.+.+|++++++++||||++++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 467889999999999999999975 5788999998654321 345778999999999999999999999
Q ss_pred EecCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC---C
Q 042568 733 CSKPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL---T 809 (983)
Q Consensus 733 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~---~ 809 (983)
+......++||||+++|+|.+++.. ...+++..++.++.|++.||+|||+.+ |+||||||+||+++.++ .
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~ 187 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIIN----RHKFDECDAANIMKQILSGICYLHKHN---IVHRDIKPENILLENKNSLLN 187 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESSTTCCSS
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCcHHHEEEecCCCCcc
Confidence 9999999999999999999988864 345899999999999999999999996 99999999999998775 6
Q ss_pred EEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccC
Q 042568 810 ALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFH 889 (983)
Q Consensus 810 ~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~ 889 (983)
+||+|||+++...... ......||+.|+|||.+.+ .++.++||||+||++|+|++|+.||....
T Consensus 188 ~kl~Dfg~a~~~~~~~--------------~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~- 251 (504)
T 3q5i_A 188 IKIVDFGLSSFFSKDY--------------KLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQN- 251 (504)
T ss_dssp EEECCCTTCEECCTTS--------------CBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSS-
T ss_pred EEEEECCCCEEcCCCC--------------ccccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCC-
Confidence 9999999998765321 1123469999999999874 68999999999999999999999986321
Q ss_pred CCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 890 DGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 890 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
..+ .+.......... ....|...+.++.+++.+|++.||++|||++|++++-.
T Consensus 252 ----~~~------------~~~~i~~~~~~~-----~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~~ 304 (504)
T 3q5i_A 252 ----DQD------------IIKKVEKGKYYF-----DFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRW 304 (504)
T ss_dssp ----HHH------------HHHHHHHCCCCC-----CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred ----HHH------------HHHHHHcCCCCC-----CccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcCHh
Confidence 111 111111111110 11123345678999999999999999999999998644
No 239
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=1.4e-36 Score=337.86 Aligned_cols=267 Identities=19% Similarity=0.285 Sum_probs=201.5
Q ss_pred CCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcC-CCCccceeeEEec--CCceeEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIR-HRNLIRIITICSK--PDFKALV 742 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~lv 742 (983)
++|...+.||+|+||.||+|.. .+++.||||+++.. ..+.+.+|++++++++ ||||+++++++.. ....++|
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV----KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC----CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc----chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 5788899999999999999996 57889999998532 3577999999999997 9999999999987 5677999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC-CEEEccccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL-TALVADFGIAKLV 821 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~-~~kl~Dfgla~~~ 821 (983)
|||+++++|.+++. .+++..++.++.|+++||+|||+.+ |+||||||+||+++.++ .+||+|||+|+..
T Consensus 112 ~e~~~~~~l~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~ 181 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQ-------TLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFY 181 (330)
T ss_dssp EECCCCCCHHHHGG-------GCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EeccCchhHHHHHH-------hCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEcCCCCEEEEEeCCCceEc
Confidence 99999999988874 2788999999999999999999996 99999999999999776 8999999999876
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~ 900 (983)
..... .....||..|+|||.+.+ ..++.++||||+||++|||++|+.||.........+......
T Consensus 182 ~~~~~--------------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~ 247 (330)
T 3nsz_A 182 HPGQE--------------YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKV 247 (330)
T ss_dssp CTTCC--------------CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHH
T ss_pred CCCCc--------------cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHh
Confidence 53221 122468999999999887 678999999999999999999999985322211111111111
Q ss_pred hC-----------CCCCcHHHHHHHhhcCCCCCccc-cccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 901 HY-----------PHRLDPIVEKAIAKYAPQHMPIY-YNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 901 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.- .....+................. ..........++.+++.+|++.||++|||++|++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h 320 (330)
T 3nsz_A 248 LGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH 320 (330)
T ss_dssp HCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred cCCchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence 10 11111111111111111100000 001112246789999999999999999999999975
No 240
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=1.2e-36 Score=331.66 Aligned_cols=250 Identities=25% Similarity=0.382 Sum_probs=196.6
Q ss_pred CCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc-CcchhHHHHHHHHHHHhcCCCCccceeeEEec----CCceeE
Q 042568 668 GFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT-TGEITGSFKRECQILKRIRHRNLIRIITICSK----PDFKAL 741 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~l 741 (983)
.|...+.||+|+||.||+|... ++..||+|.+.... .....+.+.+|++++++++||||+++++++.. ....++
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 106 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 106 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence 3666778999999999999965 67789999986543 23346789999999999999999999998864 355799
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeC-CCCCEEEcccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLD-EDLTALVADFGIAKL 820 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~-~~~~~kl~Dfgla~~ 820 (983)
||||+++|+|.+++... ..+++..++.++.|+++||+|||+.++ +|+||||||+||+++ .++.+||+|||++..
T Consensus 107 v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~~-~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~ 181 (290)
T 1t4h_A 107 VTELMTSGTLKTYLKRF----KVMKIKVLRSWCRQILKGLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLATL 181 (290)
T ss_dssp EEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHTSSS-CCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred EEEecCCCCHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHHHcCCC-CEEECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence 99999999999999742 458999999999999999999999842 399999999999998 789999999999975
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHh
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~ 900 (983)
..... .....||+.|+|||.+.+ .++.++||||+|+++|+|++|+.||.... .......
T Consensus 182 ~~~~~---------------~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~----~~~~~~~- 240 (290)
T 1t4h_A 182 KRASF---------------AKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQ----NAAQIYR- 240 (290)
T ss_dssp CCTTS---------------BEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCS----SHHHHHH-
T ss_pred ccccc---------------cccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcC----cHHHHHH-
Confidence 43211 122468999999998775 58999999999999999999999986321 1111111
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
....... +.... ...+.++.+++.+|++.||++|||++|++++
T Consensus 241 -----------~~~~~~~----~~~~~---~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 283 (290)
T 1t4h_A 241 -----------RVTSGVK----PASFD---KVAIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp -----------HHTTTCC----CGGGG---GCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred -----------HHhccCC----ccccC---CCCCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence 1111101 11111 1133578999999999999999999999875
No 241
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=5.8e-37 Score=351.49 Aligned_cols=271 Identities=24% Similarity=0.313 Sum_probs=196.7
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecC------Cce
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKP------DFK 739 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~~ 739 (983)
.+|...+.||+|+||.||+|++. +++.||||++.... ..+.+|++++++++||||+++++++... ...
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~-----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~ 128 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK-----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL 128 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT-----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc-----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeE
Confidence 35778899999999999999975 68999999985432 2234799999999999999999988432 235
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCC-CCEEEcccccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDED-LTALVADFGIA 818 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~-~~~kl~Dfgla 818 (983)
++||||+++ ++.+.+.........+++..++.++.|+++||+|||+.+ |+||||||+|||++.+ +.+||+|||+|
T Consensus 129 ~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NILl~~~~~~~kl~DFG~a 204 (420)
T 1j1b_A 129 NLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSA 204 (420)
T ss_dssp EEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred Eeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChhhEEEeCCCCeEEeccchhh
Confidence 789999986 555554432222467999999999999999999999996 9999999999999965 56899999999
Q ss_pred ccccCCcccccccCCCCccccccCccccccccccccccCCC-CCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHH
Q 042568 819 KLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK-RASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEW 897 (983)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~ 897 (983)
+....... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||.... ....+..+
T Consensus 205 ~~~~~~~~--------------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~-~~~~l~~i 269 (420)
T 1j1b_A 205 KQLVRGEP--------------NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS-GVDQLVEI 269 (420)
T ss_dssp EECCTTCC--------------CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHH
T ss_pred hhcccCCC--------------ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCC-HHHHHHHH
Confidence 87643221 1224689999999998765 78999999999999999999999986421 11122222
Q ss_pred HHhhCCCCCcHHHHHHHhhcCCCCCccccccchH-----HHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 898 VKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWS-----DVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
+...-... .+.+............+......|. ....++.+|+.+|++.||++||++.|+++|-
T Consensus 270 ~~~lg~p~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp 338 (420)
T 1j1b_A 270 IKVLGTPT-REQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHS 338 (420)
T ss_dssp HHHHCSCC-HHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred HHHhCCCC-HHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCH
Confidence 22211111 1111111111111112222222232 2357899999999999999999999999753
No 242
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=8.3e-38 Score=343.28 Aligned_cols=269 Identities=24% Similarity=0.334 Sum_probs=186.4
Q ss_pred hCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|...+.||+|+||.||+|.. .+++.||||++.........+++.+|++++++++||||+++++++...+..++|||
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 93 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMK 93 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEE
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEeh
Confidence 46889999999999999999995 46889999998765544456788999999999999999999999999999999999
Q ss_pred cccCccccccccccc----CcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccc
Q 042568 745 LMSNGSLENHLYPSH----GLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKL 820 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~----~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~ 820 (983)
|+++++|.+++.... .....+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||++..
T Consensus 94 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~ 170 (303)
T 2vwi_A 94 LLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG---QIHRDVKAGNILLGEDGSVQIADFGVSAF 170 (303)
T ss_dssp CCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEECCCHHHHH
T ss_pred hccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCCChhhEEEcCCCCEEEEeccchhe
Confidence 999999999886421 11345899999999999999999999996 99999999999999999999999999987
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
........ .........||+.|+|||.+.+ ..++.++||||||+++|||++|+.||...... .......
T Consensus 171 ~~~~~~~~--------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~ 240 (303)
T 2vwi_A 171 LATGGDIT--------RNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPM--KVLMLTL 240 (303)
T ss_dssp CC-----------------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGG--GHHHHHH
T ss_pred eccCCCcc--------chhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchh--hHHHHHh
Confidence 65322110 0011223579999999999876 56899999999999999999999998643211 1100000
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
...+....... .........+.++.+++.+|++.||++|||+.|++++
T Consensus 241 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 288 (303)
T 2vwi_A 241 QNDPPSLETGV--------------QDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRH 288 (303)
T ss_dssp TSSCCCTTC-------------------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred ccCCCcccccc--------------ccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 10010000000 0000111234678899999999999999999999975
No 243
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=6.9e-37 Score=343.06 Aligned_cols=269 Identities=19% Similarity=0.211 Sum_probs=203.3
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcc----------------hhHHHHHHHHHHHhcCCCCccce
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGE----------------ITGSFKRECQILKRIRHRNLIRI 729 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~----------------~~~~~~~E~~~l~~l~h~niv~l 729 (983)
.++|.+.+.||+|+||.||+|.. +++.||||++....... ..+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 35788999999999999999999 89999999986543221 11789999999999999999999
Q ss_pred eeEEecCCceeEEEecccCcccccc------cccccCcCCCCCHHHHHHHHHHHHHHHHHHhc-cCCCCeEeecCCCCCe
Q 042568 730 ITICSKPDFKALVLPLMSNGSLENH------LYPSHGLSHGLDLIQLVKICSDVAEGVAYLHH-HSPIKVVHCDLKPSNI 802 (983)
Q Consensus 730 ~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~-~~~~~ivH~Dikp~Ni 802 (983)
++++...+..++||||+++|+|.++ +... ....+++..++.++.|+++||+|||+ .+ |+||||||+||
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dl~p~Ni 183 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKN--YTCFIPIQVIKCIIKSVLNSFSYIHNEKN---ICHRDVKPSNI 183 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSS--SCCCCCHHHHHHHHHHHHHHHHHHHHTSC---EECCCCCGGGE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhc--cccCCCHHHHHHHHHHHHHHHHHHhccCC---EeecCCChHhE
Confidence 9999999999999999999999998 4432 14569999999999999999999998 75 99999999999
Q ss_pred EeCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCC-CCCc-cchhHHHHHHHHHHHhC
Q 042568 803 LLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK-RAST-HGDVYSFGVLLLEIVTG 880 (983)
Q Consensus 803 Ll~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-k~Dv~SlG~il~elltg 880 (983)
+++.++.+||+|||.+...... ......||+.|+|||.+.+. .++. ++||||||+++|||++|
T Consensus 184 l~~~~~~~kl~dfg~~~~~~~~---------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g 248 (348)
T 2pml_X 184 LMDKNGRVKLSDFGESEYMVDK---------------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYN 248 (348)
T ss_dssp EECTTSCEEECCCTTCEECBTT---------------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHS
T ss_pred EEcCCCcEEEeccccccccccc---------------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhC
Confidence 9999999999999999875432 11224689999999999887 6666 99999999999999999
Q ss_pred CCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 042568 881 RRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAH 960 (983)
Q Consensus 881 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~ 960 (983)
+.||...... ......+.......... .. .......+..........+.++.+++.+|++.||++|||++|+++
T Consensus 249 ~~pf~~~~~~-~~~~~~i~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 249 VVPFSLKISL-VELFNNIRTKNIEYPLD-RN----HFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp SCSSCCSSCS-HHHHHHHTSCCCCCCCS-SS----SSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCCCCCCCcH-HHHHHHHhccCcCCccc-hh----hhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 9998643211 11111111100000000 00 000000000000001234578899999999999999999999997
Q ss_pred H
Q 042568 961 E 961 (983)
Q Consensus 961 ~ 961 (983)
+
T Consensus 323 h 323 (348)
T 2pml_X 323 H 323 (348)
T ss_dssp S
T ss_pred C
Confidence 5
No 244
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=333.19 Aligned_cols=253 Identities=23% Similarity=0.399 Sum_probs=197.7
Q ss_pred CCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEecc
Q 042568 668 GFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLPLM 746 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 746 (983)
.|....+||+|+||.||+|... +++.||||.++.... ...+.+.+|+++++.++||||+++++++...+..++||||+
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 101 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDS-RYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV 101 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC----HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCch-HHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence 3444568999999999999964 678899999875533 34678999999999999999999999999999999999999
Q ss_pred cCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC-CCCEEEccccccccccCCc
Q 042568 747 SNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE-DLTALVADFGIAKLVKGID 825 (983)
Q Consensus 747 ~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~-~~~~kl~Dfgla~~~~~~~ 825 (983)
++++|.+++..... ...+++..+..++.|+++||+|||+.+ |+||||||+||+++. ++.+||+|||.++......
T Consensus 102 ~~~~L~~~l~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~ 177 (295)
T 2clq_A 102 PGGSLSALLRSKWG-PLKDNEQTIGFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN 177 (295)
T ss_dssp SEEEHHHHHHHTTC-CCTTCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTCCEEECCTTTCEESCC--
T ss_pred CCCCHHHHHHhhcc-CCCccHHHHHHHHHHHHHHHHHHHhCC---EEccCCChhhEEEECCCCCEEEeecccccccCCCC
Confidence 99999999875432 345678999999999999999999996 999999999999987 8999999999998664321
Q ss_pred ccccccCCCCccccccCccccccccccccccCCCC--CCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 826 ESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKR--ASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
. ......||+.|+|||.+.+.. ++.++||||||+++|+|++|+.||....... ..
T Consensus 178 ~-------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~------- 234 (295)
T 2clq_A 178 P-------------CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQ---AA------- 234 (295)
T ss_dssp ----------------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHH---HH-------
T ss_pred C-------------cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchh---HH-------
Confidence 1 112346899999999987643 7899999999999999999999986421100 00
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
........ .....+ ...+.++.+++.+|++.||++||+++|++++
T Consensus 235 -----~~~~~~~~-~~~~~~-------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~ 279 (295)
T 2clq_A 235 -----MFKVGMFK-VHPEIP-------ESMSAEAKAFILKCFEPDPDKRACANDLLVD 279 (295)
T ss_dssp -----HHHHHHHC-CCCCCC-------TTSCHHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred -----HHhhcccc-cccccc-------ccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 00111111 111111 2245678899999999999999999999875
No 245
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=1.1e-36 Score=350.08 Aligned_cols=197 Identities=25% Similarity=0.344 Sum_probs=170.4
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhc------CCCCccceeeEEecCCc
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRI------RHRNLIRIITICSKPDF 738 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~~ 738 (983)
..+|.+.++||+|+||.||+|... +++.||||++... .....++.+|+++++.+ +|+||+++++++.....
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 173 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE--KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH 173 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc--cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe
Confidence 357889999999999999999865 5788999999643 23356788899999887 46799999999999999
Q ss_pred eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCC--EEEcccc
Q 042568 739 KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLT--ALVADFG 816 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~--~kl~Dfg 816 (983)
.++||||+. ++|.+++.... ...+++..++.++.|+++||+|||+.+ |+||||||+|||++.++. +||+|||
T Consensus 174 ~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NILl~~~~~~~vkL~DFG 247 (429)
T 3kvw_A 174 ICMTFELLS-MNLYELIKKNK--FQGFSLPLVRKFAHSILQCLDALHKNR---IIHCDLKPENILLKQQGRSGIKVIDFG 247 (429)
T ss_dssp EEEEECCCC-CBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHHHT---EECSCCSGGGEEESSTTSCCEEECCCT
T ss_pred EEEEEeccC-CCHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEccCCCcceEEeecc
Confidence 999999996 58888887543 345899999999999999999999996 999999999999999887 9999999
Q ss_pred ccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCc
Q 042568 817 IAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDV 886 (983)
Q Consensus 817 la~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~ 886 (983)
+|+..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 248 ~a~~~~~~----------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~ 301 (429)
T 3kvw_A 248 SSCYEHQR----------------VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPG 301 (429)
T ss_dssp TCEETTCC----------------CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred cceecCCc----------------ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCC
Confidence 99754321 1224799999999999999999999999999999999999999864
No 246
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=7.2e-37 Score=345.39 Aligned_cols=269 Identities=20% Similarity=0.271 Sum_probs=200.2
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-chhHHHHHHHHHHHhcCCCCccceeeEEecCCce----
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-EITGSFKRECQILKRIRHRNLIRIITICSKPDFK---- 739 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 739 (983)
.++|...+.||+|+||.||+|... +++.||||++...... ...+++.+|+++++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 357888999999999999999965 6889999999765433 3457889999999999999999999999877655
Q ss_pred --eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccc
Q 042568 740 --ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGI 817 (983)
Q Consensus 740 --~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgl 817 (983)
++||||++ ++|.+.+. ..+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+
T Consensus 121 ~~~lv~e~~~-~~l~~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kL~Dfg~ 190 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMG------MEFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGL 190 (371)
T ss_dssp CCEEEEECCC-EEHHHHTT------SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECSTTC
T ss_pred eEEEEEcccc-ccHHHHhh------cCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCcCHHHeEECCCCCEEEEecCc
Confidence 99999998 57777663 34899999999999999999999996 99999999999999999999999999
Q ss_pred cccccCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHH
Q 042568 818 AKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHE 896 (983)
Q Consensus 818 a~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~ 896 (983)
++..... .....||+.|+|||.+.+ ..++.++||||+||++|+|++|+.||..... ...+..
T Consensus 191 a~~~~~~----------------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~ 253 (371)
T 4exu_A 191 ARHADAE----------------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY-LDQLTQ 253 (371)
T ss_dssp C------------------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHH
T ss_pred ccccccC----------------cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCh-HHHHHH
Confidence 9865421 122468999999999887 7789999999999999999999999864211 111111
Q ss_pred HHHhhCCC-------CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 897 WVKRHYPH-------RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 897 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
.+...... ................ ........+.....++.+++.+|++.||++|||++|++++-
T Consensus 254 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp 325 (371)
T 4exu_A 254 ILKVTGVPGTEFVQKLNDKAAKSYIQSLPQT-PRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHP 325 (371)
T ss_dssp HHHHHCCCCHHHHTTCSCHHHHHHHHHSCCC-CCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSG
T ss_pred HHHHhCCCcHHHHHHhhhhhhhhhhhccCCC-cchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcCc
Confidence 11111100 0111111222221111 11111111223467899999999999999999999999863
No 247
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=7.1e-37 Score=343.71 Aligned_cols=283 Identities=23% Similarity=0.243 Sum_probs=204.1
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecC-----Cce
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKP-----DFK 739 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 739 (983)
.++|...+.||+|+||.||+|... +++.||||++..........++.+|++++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 467888999999999999999975 68889999997555545567888999999999999999999988654 677
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
++||||++ ++|.+++.. ..+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+++
T Consensus 90 ~lv~e~~~-~~L~~~~~~-----~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~ 160 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVIST-----QMLSDDHIQYFIYQTLRAVKVLHGSN---VIHRDLKPSNLLINSNCDLKVCDFGLAR 160 (353)
T ss_dssp EEEECCCS-EEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEeccC-ccHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEcCCCcEEEEeccccc
Confidence 99999997 588888763 45899999999999999999999996 9999999999999999999999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWV 898 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~ 898 (983)
............ ...........||+.|+|||.+.+ ..++.++|||||||++|||++|+.||..... ...+....
T Consensus 161 ~~~~~~~~~~~~---~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~~~~~ 236 (353)
T 2b9h_A 161 IIDESAADNSEP---TGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDY-RHQLLLIF 236 (353)
T ss_dssp ECC-------------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHH
T ss_pred ccccccccccCc---cccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCc-HHHHHHHH
Confidence 765432111000 000011223579999999998754 6789999999999999999999999864211 00011111
Q ss_pred HhhC-CC-------CCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 899 KRHY-PH-------RLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 899 ~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
...- +. .........+...... ........+...+.++.+++.+|++.||++|||++|++++-
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp 307 (353)
T 2b9h_A 237 GIIGTPHSDNDLRCIESPRAREYIKSLPMY-PAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHP 307 (353)
T ss_dssp HHHCCCCSTTTTTTCCCHHHHHHHHTSCCC-CCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSG
T ss_pred HHhCCCchhccccccccchhhHHhhcccCC-CCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCc
Confidence 1000 00 0011111112111110 00011111234567889999999999999999999999853
No 248
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=8e-37 Score=338.44 Aligned_cols=253 Identities=24% Similarity=0.367 Sum_probs=196.6
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-------cchhHHHHHHHHHHHhcCCCCccceeeEEecCC
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-------GEITGSFKRECQILKRIRHRNLIRIITICSKPD 737 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 737 (983)
.++|.+.+.||+|+||.||+|... +++.||||++..... ......+.+|++++++++||||+++++++...+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 357889999999999999999965 578899999864321 123456889999999999999999999997655
Q ss_pred ceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCC---EEEcc
Q 042568 738 FKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLT---ALVAD 814 (983)
Q Consensus 738 ~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~---~kl~D 814 (983)
.++||||+++++|.+++.. ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++. +||+|
T Consensus 89 -~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~D 160 (322)
T 2ycf_A 89 -YYIVLELMEGGELFDKVVG----NKRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITD 160 (322)
T ss_dssp -EEEEEECCTTEETHHHHST----TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSSSCCEEECC
T ss_pred -eEEEEecCCCCcHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEecCCCCCeEEEcc
Confidence 7999999999999998864 346899999999999999999999996 999999999999987654 99999
Q ss_pred ccccccccCCcccccccCCCCccccccCccccccccccccccC---CCCCCccchhHHHHHHHHHHHhCCCCCCcccCCC
Q 042568 815 FGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM---GKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDG 891 (983)
Q Consensus 815 fgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~ 891 (983)
||+++...... ......||+.|+|||++. +..++.++||||||+++|+|++|+.||..... .
T Consensus 161 fg~~~~~~~~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~ 225 (322)
T 2ycf_A 161 FGHSKILGETS--------------LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT-Q 225 (322)
T ss_dssp CTTCEECCCCH--------------HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTC-S
T ss_pred Cccceeccccc--------------ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch-H
Confidence 99998764321 112346899999999863 56788999999999999999999999864321 1
Q ss_pred CchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 892 SSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 892 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
..+...+..... ... ...+.+.+.++.+++.+|++.||++||++.|++++
T Consensus 226 ~~~~~~~~~~~~----------------~~~----~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h 275 (322)
T 2ycf_A 226 VSLKDQITSGKY----------------NFI----PEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH 275 (322)
T ss_dssp SCHHHHHHHTCC----------------CCC----HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHHhCcc----------------ccC----chhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhC
Confidence 122222211100 000 11122345788999999999999999999999853
No 249
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-36 Score=351.11 Aligned_cols=284 Identities=22% Similarity=0.194 Sum_probs=194.1
Q ss_pred ccccccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccc
Q 042568 196 NECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFF 275 (983)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 275 (983)
.|..+++|++|+|++|.+++..|.+|.++++|++|+|++|+++ .+|...+..+++|++|+|+
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls----------------- 112 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS----------------- 112 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECT-----------------
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECC-----------------
Confidence 3445666666666666666666666666666666666666665 4554444444444444444
Q ss_pred cccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCC
Q 042568 276 ASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMS 355 (983)
Q Consensus 276 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 355 (983)
+|++++..|..+..+ ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..+..++
T Consensus 113 ---------------~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 113 ---------------ENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176 (477)
T ss_dssp ---------------TSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT
T ss_pred ---------------CCccccCChhHcccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC
Confidence 444444444455544 3566777777777666777788888888888888888876666788888
Q ss_pred CCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEcc
Q 042568 356 KLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLS 435 (983)
Q Consensus 356 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls 435 (983)
+|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.+|.......+|+.|++++|.+++..+..+..+++|+.|+|+
T Consensus 177 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256 (477)
T ss_dssp TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECC
T ss_pred CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECC
Confidence 88888888888888777788888888888888887777777666666677777777777775444567777777777777
Q ss_pred CccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccc
Q 042568 436 HNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEG 514 (983)
Q Consensus 436 ~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 514 (983)
+|++++..+..+..+++|+. |+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++.
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 257 YNPISTIEGSMLHELLRLQE-IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp SSCCCEECTTSCTTCTTCCE-EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCcCCccChhhccccccCCE-EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 77777666666666777764 6777776666666666666666666666666665444455666666666666666653
No 250
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.2e-37 Score=340.09 Aligned_cols=261 Identities=25% Similarity=0.382 Sum_probs=199.5
Q ss_pred CCHHHHHHHhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEe
Q 042568 657 VSYKQLIEATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICS 734 (983)
Q Consensus 657 ~~~~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~ 734 (983)
+++.++....++|...+.||+|+||.||+|.+. +++.||||++..... ....+.+|+++++++ +||||+++++++.
T Consensus 14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 91 (326)
T 2x7f_A 14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD--EEEEIKQEINMLKKYSHHRNIATYYGAFI 91 (326)
T ss_dssp --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS--TTHHHHHHHHHHHHHCCSTTBCCEEEEEE
T ss_pred ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc--cHHHHHHHHHHHHhccCCCCeeeeeeEEe
Confidence 334444556788999999999999999999974 688999999865433 357899999999999 8999999999997
Q ss_pred c------CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCC
Q 042568 735 K------PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDL 808 (983)
Q Consensus 735 ~------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~ 808 (983)
. .+..++||||+++|+|.+++.... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++
T Consensus 92 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~ 166 (326)
T 2x7f_A 92 KKNPPGMDDQLWLVMEFCGAGSVTDLIKNTK--GNTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENA 166 (326)
T ss_dssp ECC--CCCCEEEEEEECCTTEEHHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTC
T ss_pred eccCccccceEEEEEEcCCCCcHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCcHHHEEEcCCC
Confidence 6 467899999999999999987543 356899999999999999999999996 99999999999999999
Q ss_pred CEEEccccccccccCCcccccccCCCCccccccCccccccccccccccC-----CCCCCccchhHHHHHHHHHHHhCCCC
Q 042568 809 TALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM-----GKRASTHGDVYSFGVLLLEIVTGRRP 883 (983)
Q Consensus 809 ~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~k~Dv~SlG~il~elltg~~p 883 (983)
.+||+|||++....... .......||+.|+|||.+. +..++.++||||||+++|+|++|+.|
T Consensus 167 ~~kl~Dfg~~~~~~~~~-------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p 233 (326)
T 2x7f_A 167 EVKLVDFGVSAQLDRTV-------------GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPP 233 (326)
T ss_dssp CEEECCCTTTC--------------------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCT
T ss_pred CEEEeeCcCceecCcCc-------------cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCC
Confidence 99999999998654321 1112346999999999987 56788999999999999999999999
Q ss_pred CCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 884 TDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 884 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
|..... . . ..........+. ... ...+.++.+++.+|+..||++||++.|++++
T Consensus 234 ~~~~~~----~-~------------~~~~~~~~~~~~----~~~---~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 287 (326)
T 2x7f_A 234 LCDMHP----M-R------------ALFLIPRNPAPR----LKS---KKWSKKFQSFIESCLVKNHSQRPATEQLMKH 287 (326)
T ss_dssp TTTSCH----H-H------------HHHHHHHSCCCC----CSC---SCSCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred CCCCcH----H-H------------HHHHhhcCcccc----CCc---cccCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 853210 0 0 000001110100 001 1234678899999999999999999999974
No 251
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=331.03 Aligned_cols=255 Identities=25% Similarity=0.357 Sum_probs=198.4
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC---cchhHHHHHHHHHHHhcCCCCccceeeEEe--cCCce
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT---GEITGSFKRECQILKRIRHRNLIRIITICS--KPDFK 739 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~ 739 (983)
.++|.+.+.||+|+||.||+|... +++.||||+++.... ....+.+.+|++++++++||||+++++++. .....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 468999999999999999999964 688999999965431 234578999999999999999999999984 45578
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
++||||++++ +.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+||+|||.+.
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~NIl~~~~~~~kl~dfg~~~ 157 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVP--EKRFPVCQAHGYFCQLIDGLEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAE 157 (305)
T ss_dssp EEEEECCSEE-HHHHHHHST--TCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred EEEehhccCC-HHHHHHhCc--ccccCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEcCCCcEEeecccccc
Confidence 9999999876 666665432 456899999999999999999999996 9999999999999999999999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCC--CCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKR--ASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEW 897 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~ 897 (983)
........ .......||+.|+|||...+.. ++.++||||+|+++|||++|+.||... .....
T Consensus 158 ~~~~~~~~-----------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~ 221 (305)
T 2wtk_C 158 ALHPFAAD-----------DTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD-----NIYKL 221 (305)
T ss_dssp ECCTTCSS-----------CEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHH
T ss_pred ccCccccc-----------cccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCc-----hHHHH
Confidence 76432211 1112346999999999987644 378999999999999999999998632 11111
Q ss_pred HHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 898 VKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
.+....... ..+ .++..++.+++.+|++.||++|||++|++++-.
T Consensus 222 ------------~~~i~~~~~--~~~-------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~ 266 (305)
T 2wtk_C 222 ------------FENIGKGSY--AIP-------GDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSW 266 (305)
T ss_dssp ------------HHHHHHCCC--CCC-------SSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHH
T ss_pred ------------HHHHhcCCC--CCC-------CccCHHHHHHHHHHccCChhhCCCHHHHhcCcc
Confidence 111111111 011 124467889999999999999999999998744
No 252
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=1.9e-36 Score=341.17 Aligned_cols=281 Identities=21% Similarity=0.209 Sum_probs=192.9
Q ss_pred HHHHHHhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCc
Q 042568 660 KQLIEATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDF 738 (983)
Q Consensus 660 ~~l~~~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 738 (983)
.......++|.+.+.||+|+||.||+|... +++.||||++..... ...++.+|++.++.++||||+++++++.....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~ 93 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR--FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGE 93 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT--CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc--ccHHHHHHHHHHHhcCCCCcccHHHhhhcccc
Confidence 345566789999999999999999999975 688999998855432 34567788889999999999999999865433
Q ss_pred -------eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHh--ccCCCCeEeecCCCCCeEeCC-CC
Q 042568 739 -------KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLH--HHSPIKVVHCDLKPSNILLDE-DL 808 (983)
Q Consensus 739 -------~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH--~~~~~~ivH~Dikp~NiLl~~-~~ 808 (983)
.++||||+++ ++.+.+.........+++..+..++.|++.||.||| +.+ |+||||||+||+++. ++
T Consensus 94 ~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~---ivH~Dlkp~NIll~~~~~ 169 (360)
T 3e3p_A 94 RDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN---VCHRDIKPHNVLVNEADG 169 (360)
T ss_dssp SCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTC---CBCSCCCGGGEEEETTTT
T ss_pred ccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCC---eecCcCCHHHEEEeCCCC
Confidence 7899999986 444433322222556899999999999999999999 775 999999999999996 89
Q ss_pred CEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCC-CCccchhHHHHHHHHHHHhCCCCCCcc
Q 042568 809 TALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKR-ASTHGDVYSFGVLLLEIVTGRRPTDVL 887 (983)
Q Consensus 809 ~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~k~Dv~SlG~il~elltg~~p~~~~ 887 (983)
.+||+|||+++....... .....||+.|+|||.+.+.. ++.++|||||||++|||++|+.||...
T Consensus 170 ~~kl~Dfg~a~~~~~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~ 235 (360)
T 3e3p_A 170 TLKLCDFGSAKKLSPSEP--------------NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGD 235 (360)
T ss_dssp EEEECCCTTCBCCCTTSC--------------CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cEEEeeCCCceecCCCCC--------------cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 999999999987653221 12246899999999987654 899999999999999999999998642
Q ss_pred cCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchH--------HHHHHHHHHHhhhcCCCCCCCCCHHHHH
Q 042568 888 FHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWS--------DVVLELIELGLLCTQYNPSTRPSMLDVA 959 (983)
Q Consensus 888 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~l~~~cl~~dP~~RPs~~evl 959 (983)
.. ...+..++.... ....+.....................|. ....++.+++.+|++.||++|||+.|++
T Consensus 236 ~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l 313 (360)
T 3e3p_A 236 NS-AGQLHEIVRVLG-CPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEAL 313 (360)
T ss_dssp SH-HHHHHHHHHHHC-CCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred Ch-HHHHHHHHHHcC-CCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHh
Confidence 11 111222222111 1111111111110000000000001111 2467899999999999999999999999
Q ss_pred HHH
Q 042568 960 HEM 962 (983)
Q Consensus 960 ~~L 962 (983)
++-
T Consensus 314 ~hp 316 (360)
T 3e3p_A 314 CHP 316 (360)
T ss_dssp TSG
T ss_pred cCc
Confidence 863
No 253
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=1.2e-36 Score=367.75 Aligned_cols=251 Identities=22% Similarity=0.299 Sum_probs=204.6
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeeccc--CcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCcee
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTT--TGEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKA 740 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 740 (983)
..++|...++||+|+||.||+|+.. +++.||||+++... .....+.+..|.+++..+ +||+|+++++++.+.+..+
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 3467889999999999999999965 57889999997542 223457788999999988 7999999999999999999
Q ss_pred EEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccc
Q 042568 741 LVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKL 820 (983)
Q Consensus 741 lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~ 820 (983)
+||||+++|+|.+++... ..+++..++.++.||+.||+|||+.+ |+||||||+|||++.++.+||+|||+|+.
T Consensus 419 lV~E~~~gg~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~g---IiHrDLKp~NILl~~~g~ikL~DFGla~~ 491 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQV----GRFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKE 491 (674)
T ss_dssp EEEECCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHTS---EECCCCCSTTEEECSSSCEEECCCTTCEE
T ss_pred EEEeCcCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhCC---eEeccCChhhEEEcCCCcEEEeecceeec
Confidence 999999999999998753 45899999999999999999999996 99999999999999999999999999985
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHh
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~ 900 (983)
..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||... ..
T Consensus 492 ~~~~~-------------~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~-----~~------ 547 (674)
T 3pfq_A 492 NIWDG-------------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-----DE------ 547 (674)
T ss_dssp CCCTT-------------CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS-----SH------
T ss_pred cccCC-------------cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC-----CH------
Confidence 43211 1123457999999999999999999999999999999999999998632 11
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCH-----HHHHHH
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSM-----LDVAHE 961 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~-----~evl~~ 961 (983)
.+..+....... ..| .....++.+++.+|++.||++||++ +||++|
T Consensus 548 ------~~~~~~i~~~~~--~~p-------~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h 598 (674)
T 3pfq_A 548 ------DELFQSIMEHNV--AYP-------KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH 598 (674)
T ss_dssp ------HHHHHHHHSSCC--CCC-------TTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSS
T ss_pred ------HHHHHHHHhCCC--CCC-------ccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcC
Confidence 112222221111 111 1245678999999999999999998 777754
No 254
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=1.3e-36 Score=333.02 Aligned_cols=273 Identities=25% Similarity=0.323 Sum_probs=201.0
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
++|...+.||+|+||.||+|+.. +++.||||.+..... ......+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57888999999999999999975 689999999865432 2235778999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|++ ++|.+++.... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||.++.....
T Consensus 83 ~~~-~~L~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~ 156 (299)
T 2r3i_A 83 FLH-QDLKKFMDASA--LTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVP 156 (299)
T ss_dssp CCS-EEHHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECSTTHHHHHCCC
T ss_pred ccc-CCHHHHHHhhh--ccCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHeEEcCCCCEEECcchhhhhccCC
Confidence 998 59988886543 345899999999999999999999996 999999999999999999999999999876432
Q ss_pred cccccccCCCCccccccCccccccccccccccCCCC-CCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKR-ASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
.. ......||+.|+|||.+.+.. ++.++||||||+++|+|++|+.||..... ...+.........
T Consensus 157 ~~-------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-~~~~~~~~~~~~~ 222 (299)
T 2r3i_A 157 VR-------------TYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE-IDQLFRIFRTLGT 222 (299)
T ss_dssp SB-------------CTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCC
T ss_pred cc-------------ccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccH-HHHHHHHHHHhCC
Confidence 11 112246899999999988765 78999999999999999999999864211 0111111111100
Q ss_pred C-C-CcHHHHHHHhhcCCCCCccccc----cchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 904 H-R-LDPIVEKAIAKYAPQHMPIYYN----KVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 904 ~-~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
. . ..+.... ... .....+.... ........++.+++.+|++.||++|||+.|++++
T Consensus 223 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~h 284 (299)
T 2r3i_A 223 PDEVVWPGVTS-MPD-YKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH 284 (299)
T ss_dssp CCTTTSTTGGG-STT-CCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CchhhhhHhhc-Ccc-cchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 0 0 0000000 000 0000000000 1112245678999999999999999999999985
No 255
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=1.7e-37 Score=350.79 Aligned_cols=254 Identities=11% Similarity=0.020 Sum_probs=182.1
Q ss_pred CCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhc--CCCCcccee-------eEEec
Q 042568 668 GFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRI--RHRNLIRII-------TICSK 735 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l--~h~niv~l~-------~~~~~ 735 (983)
.|...+.||+|+||.||+|.+. +++.||||++..... ....+.+.+|+++++.+ +||||++++ +++..
T Consensus 63 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~ 142 (371)
T 3q60_A 63 KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAV 142 (371)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEE
T ss_pred eeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheec
Confidence 4778899999999999999965 788999999977543 23456788886665555 599988755 44433
Q ss_pred C-----------------CceeEEEecccCcccccccccccCcCCCCCHHHH------HHHHHHHHHHHHHHhccCCCCe
Q 042568 736 P-----------------DFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQL------VKICSDVAEGVAYLHHHSPIKV 792 (983)
Q Consensus 736 ~-----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~------~~i~~~ia~aL~~LH~~~~~~i 792 (983)
+ ...++||||++ |+|.+++.... ..+++..+ ..++.|+++||+|||+++ |
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~---~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~---i 215 (371)
T 3q60_A 143 QSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD---FVYVFRGDEGILALHILTAQLIRLAANLQSKG---L 215 (371)
T ss_dssp TTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH---HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT---E
T ss_pred CCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc---cccchhhhhhhhhHHHHHHHHHHHHHHHHHCC---C
Confidence 2 23799999999 89999997542 22345555 778899999999999996 9
Q ss_pred EeecCCCCCeEeCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCC--CCCCccchhHHH
Q 042568 793 VHCDLKPSNILLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG--KRASTHGDVYSF 870 (983)
Q Consensus 793 vH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~k~Dv~Sl 870 (983)
+||||||+|||++.++.+||+|||+|+...... ....||+.|+|||++.+ ..++.++|||||
T Consensus 216 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~----------------~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSl 279 (371)
T 3q60_A 216 VHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRG----------------PASSVPVTYAPREFLNASTATFTHALNAWQL 279 (371)
T ss_dssp EETTCSGGGEEECTTSCEEECCGGGEEETTCEE----------------EGGGSCGGGCCHHHHTCSEEECCHHHHHHHH
T ss_pred ccCcCCHHHEEECCCCCEEEEecceeeecCCCc----------------cCccCCcCCcChhhccCCCCCcCccccHHHH
Confidence 999999999999999999999999998654211 12357799999999987 779999999999
Q ss_pred HHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCC
Q 042568 871 GVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPS 950 (983)
Q Consensus 871 G~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~ 950 (983)
||++|||++|+.||.......... +.... ....... ......+..++.++.+++.+|++.||+
T Consensus 280 G~il~elltg~~Pf~~~~~~~~~~-------~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~li~~~L~~dP~ 342 (371)
T 3q60_A 280 GLSIYRVWCLFLPFGLVTPGIKGS-------WKRPS-------LRVPGTD---SLAFGSCTPLPDFVKTLIGRFLNFDRR 342 (371)
T ss_dssp HHHHHHHHHSSCSTTBCCTTCTTC-------CCBCC-------TTSCCCC---SCCCTTSSCCCHHHHHHHHHHTCSSTT
T ss_pred HHHHHHHHhCCCCCCCcCcccccc-------hhhhh-------hhhcccc---ccchhhccCCCHHHHHHHHHHcCCChh
Confidence 999999999999997543221100 00000 0000000 000011123567899999999999999
Q ss_pred CCCCHHHHHHH
Q 042568 951 TRPSMLDVAHE 961 (983)
Q Consensus 951 ~RPs~~evl~~ 961 (983)
+|||+.|++++
T Consensus 343 ~Rpt~~e~l~h 353 (371)
T 3q60_A 343 RRLLPLEAMET 353 (371)
T ss_dssp TCCCHHHHTTS
T ss_pred hCCCHHHHhcC
Confidence 99999999864
No 256
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.1e-36 Score=361.05 Aligned_cols=351 Identities=22% Similarity=0.226 Sum_probs=228.6
Q ss_pred CccccCCCCCCCCCCcc----eeeEEECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCC
Q 042568 50 PEHALESWNSTDVHVCN----WSGVKCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLI 125 (983)
Q Consensus 50 ~~~~l~sw~~~~~~~c~----w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (983)
....+++|... .+||. |.++.|+. .++...... .....-..+++++.|++++|.++...+..+++++
T Consensus 5 ~~~~l~~~~~~-~~C~~~~~~~~c~~~~~------~i~~~~~~~--~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~ 75 (597)
T 3oja_B 5 QRYNVKPRQPE-YKCIDSNLQYDCVFYDV------HIDMQTQDV--YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75 (597)
T ss_dssp ------CCCSE-ECCCCC--CCSEEECSC------EECSSCCCC--EESCSSGGGCCCSEEEESSCEESEECTHHHHHCC
T ss_pred ccccccCCCCC-CcCcccCcCceeEecCc------eeccccccc--ccCcccccCCCceEEEeeCCCCCCcCHHHHccCC
Confidence 34467889863 45663 66666642 111111111 1112233578899999999999855555678899
Q ss_pred CCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccce
Q 042568 126 RLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRF 205 (983)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~ 205 (983)
+|++|+|++|.|++..|..|+.+++|++|+|++|.+++..|..+ ..+++|++|+|++|.++ .+|...|..+++|++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH---cCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCE
Confidence 99999999999998888899999999999999999986555444 37888999999999888 567677778899999
Q ss_pred eecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCcc
Q 042568 206 LLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQ 285 (983)
Q Consensus 206 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~ 285 (983)
|+|++|.+++..|..|+++++|++|+|++|.+++ ++ +..+++|+.|++++|.+.. +...++|+
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~-------------l~~~~~L~ 214 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLST-------------LAIPIAVE 214 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCCSE-------------EECCTTCS
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCcccc-------------ccCCchhh
Confidence 9999999998888889999999999999998874 44 3557778888888776643 22334566
Q ss_pred EEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCC
Q 042568 286 ELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNN 365 (983)
Q Consensus 286 ~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 365 (983)
+|++++|.++...+. + .++|+.|+|++|.+++ +..+..+++|+.|+|++|
T Consensus 215 ~L~ls~n~l~~~~~~--------------------------~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N 264 (597)
T 3oja_B 215 ELDASHNSINVVRGP--------------------------V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 264 (597)
T ss_dssp EEECCSSCCCEEECS--------------------------C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSS
T ss_pred eeeccCCcccccccc--------------------------c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCC
Confidence 666666655432211 1 1345555555555553 234555555555555555
Q ss_pred cccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCc
Q 042568 366 SLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPS 445 (983)
Q Consensus 366 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 445 (983)
.+.+.+|..|+.+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++..
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~-- 340 (597)
T 3oja_B 265 ELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK-- 340 (597)
T ss_dssp CCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred ccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--
Confidence 5555555555555666666666666553 3444555566666666666665 45555566666666666666665432
Q ss_pred cccCCCccceeccccCCCCCC
Q 042568 446 DVAGLRSLKLYLNLSSNHLDG 466 (983)
Q Consensus 446 ~~~~l~~L~~~L~l~~N~l~~ 466 (983)
+..+++|+. |++++|.+++
T Consensus 341 -~~~~~~L~~-L~l~~N~~~~ 359 (597)
T 3oja_B 341 -LSTHHTLKN-LTLSHNDWDC 359 (597)
T ss_dssp -CCTTCCCSE-EECCSSCEEH
T ss_pred -hhhcCCCCE-EEeeCCCCCC
Confidence 344555554 6666666653
No 257
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=339.08 Aligned_cols=272 Identities=19% Similarity=0.217 Sum_probs=189.9
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcC-CCCccceeeEEe--------c
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIR-HRNLIRIITICS--------K 735 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~--------~ 735 (983)
..+|.+.++||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.++++++ ||||+++++++. .
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~ 105 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNE-EEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG 105 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESS-HHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCc-hHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence 347888999999999999999964 68899999985443 334677899999999996 999999999984 3
Q ss_pred CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccc
Q 042568 736 PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADF 815 (983)
Q Consensus 736 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Df 815 (983)
....++||||++ |+|.+++..... ...+++..++.++.|+++||+|||+.++ +|+||||||+||+++.++.+||+||
T Consensus 106 ~~~~~lv~e~~~-g~L~~~l~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~~-~ivH~Dikp~NIl~~~~~~~kl~Df 182 (337)
T 3ll6_A 106 QAEFLLLTELCK-GQLVEFLKKMES-RGPLSCDTVLKIFYQTCRAVQHMHRQKP-PIIHRDLKVENLLLSNQGTIKLCDF 182 (337)
T ss_dssp SEEEEEEEECCS-EEHHHHHHHHHT-TCSCCHHHHHHHHHHHHHHHHHHHTSSS-CCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred CceEEEEEEecC-CCHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCC-CEEEccCCcccEEECCCCCEEEecC
Confidence 345789999996 688888764322 3469999999999999999999999842 3999999999999999999999999
Q ss_pred cccccccCCcccccccCCCCccccccCcccccccccccccc---CCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCC
Q 042568 816 GIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYG---MGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGS 892 (983)
Q Consensus 816 gla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~---~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~ 892 (983)
|+++............ .............||+.|+|||.+ .+..++.++||||||+++|||++|+.||.....
T Consensus 183 g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~--- 258 (337)
T 3ll6_A 183 GSATTISHYPDYSWSA-QRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAK--- 258 (337)
T ss_dssp TTCBCCSSCC--------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC--------
T ss_pred ccceeccccCcccccc-cccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhH---
Confidence 9998775432211000 000000111234699999999998 566789999999999999999999999853210
Q ss_pred chHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcC
Q 042568 893 SLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLS 970 (983)
Q Consensus 893 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~ 970 (983)
... .... .....+ ......+.+++.+|++.||++|||++|++++|+++.+...
T Consensus 259 --~~~------------~~~~----~~~~~~-------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~ 311 (337)
T 3ll6_A 259 --LRI------------VNGK----YSIPPH-------DTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN 311 (337)
T ss_dssp -------------------------CCCCTT-------CCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred --HHh------------hcCc----ccCCcc-------cccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence 000 0000 000000 1122457889999999999999999999999999976543
No 258
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=1.2e-36 Score=334.02 Aligned_cols=253 Identities=21% Similarity=0.333 Sum_probs=198.2
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|.+.+.||+|+||.||+|... +++.||+|++..... ...+++.+|++++++++||||+++++++...+..++|||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSE-EELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC-----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCH-HHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 457888999999999999999976 588999999865433 346789999999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|+++++|.+++... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||++......
T Consensus 97 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 170 (302)
T 2j7t_A 97 FCPGGAVDAIMLEL---DRGLTEPQIQVVCRQMLEALNFLHSKR---IIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT 170 (302)
T ss_dssp CCTTEEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH
T ss_pred eCCCCcHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEECCCCCEEEEECCCCcccccc
Confidence 99999999988643 345899999999999999999999996 999999999999999999999999997643211
Q ss_pred cccccccCCCCccccccCcccccccccccccc-----CCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYG-----MGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
. .......||+.|+|||.+ .+..++.++||||||+++|+|++|+.||..... .
T Consensus 171 ~-------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~---- 228 (302)
T 2j7t_A 171 L-------------QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP-----M---- 228 (302)
T ss_dssp H-------------HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCH-----H----
T ss_pred c-------------cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCH-----H----
Confidence 1 111224699999999987 466789999999999999999999999864211 0
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
...........+. .. .....+.++.+++.+|++.||++|||+.|++++
T Consensus 229 --------~~~~~~~~~~~~~-~~-----~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 276 (302)
T 2j7t_A 229 --------RVLLKIAKSDPPT-LL-----TPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH 276 (302)
T ss_dssp --------HHHHHHHHSCCCC-CS-----SGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred --------HHHHHHhccCCcc-cC-----CccccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 1111111111110 00 012245678899999999999999999999875
No 259
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=3e-36 Score=340.39 Aligned_cols=273 Identities=21% Similarity=0.199 Sum_probs=195.5
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCC------
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPD------ 737 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 737 (983)
.++|...+.||+|+||.||+|... +++.||||++..... ....+++.+|+++++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 357888999999999999999965 688899999975432 234567889999999999999999999997655
Q ss_pred ceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccc
Q 042568 738 FKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGI 817 (983)
Q Consensus 738 ~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgl 817 (983)
..++||||+++ +|.+.+. ..+++..+..++.|+++||+|||+.+ |+||||||+||+++.++.+||+|||+
T Consensus 104 ~~~lv~e~~~~-~l~~~~~------~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 173 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQ------MELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGL 173 (371)
T ss_dssp EEEEEEECCSE-EHHHHHH------SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCCCC
T ss_pred ceEEEEEcCCC-CHHHHHh------hccCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEEEeec
Confidence 67999999975 6777664 24889999999999999999999996 99999999999999999999999999
Q ss_pred cccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHH
Q 042568 818 AKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEW 897 (983)
Q Consensus 818 a~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~ 897 (983)
++...... ......||+.|+|||.+.+..++.++||||+||++|||++|+.||..... ...+...
T Consensus 174 a~~~~~~~--------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~i 238 (371)
T 2xrw_A 174 ARTAGTSF--------------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH-IDQWNKV 238 (371)
T ss_dssp ------------------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHH
T ss_pred cccccccc--------------ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHH
Confidence 98654211 11234799999999999999999999999999999999999999864211 0011111
Q ss_pred HHhhCC------CCCcHHHHHHHhhcCCCC-----------CccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH
Q 042568 898 VKRHYP------HRLDPIVEKAIAKYAPQH-----------MPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAH 960 (983)
Q Consensus 898 ~~~~~~------~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~ 960 (983)
+..... ..+.+.+........... ..+...........++.+++.+|++.||++|||++|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 239 IEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp HC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 111000 001111111111110000 000001112334678999999999999999999999998
Q ss_pred HHH
Q 042568 961 EMG 963 (983)
Q Consensus 961 ~L~ 963 (983)
+=.
T Consensus 319 hp~ 321 (371)
T 2xrw_A 319 HPY 321 (371)
T ss_dssp SHH
T ss_pred Ccc
Confidence 653
No 260
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=337.32 Aligned_cols=266 Identities=22% Similarity=0.395 Sum_probs=199.7
Q ss_pred hCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
.++|...+.||+|+||.||+|.... .||+|+++.... ....+.+.+|++++++++||||+++++++...+..++|||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e 109 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS 109 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence 4678899999999999999999753 499999865432 2345678899999999999999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGI 824 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~ 824 (983)
|+++++|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++ ++.+||+|||+++.....
T Consensus 110 ~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~ 182 (319)
T 2y4i_B 110 LCKGRTLYSVVRDA---KIVLDVNKTRQIAQEIVKGMGYLHAKG---ILHKDLKSKNVFYD-NGKVVITDFGLFSISGVL 182 (319)
T ss_dssp CCCSEEHHHHTTSS---CCCCCSHHHHHHHHHHHHHHHHHHHTT---CCCCCCCSTTEEEC---CCEECCCSCCC-----
T ss_pred cccCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChhhEEEe-CCCEEEeecCCccccccc
Confidence 99999999999753 346899999999999999999999996 99999999999998 679999999998765432
Q ss_pred cccccccCCCCccccccCccccccccccccccCC---------CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchH
Q 042568 825 DESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG---------KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLH 895 (983)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---------~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~ 895 (983)
.... .........||+.|+|||.+.+ ..++.++||||||+++|||++|+.||.... ..
T Consensus 183 ~~~~--------~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-----~~ 249 (319)
T 2y4i_B 183 QAGR--------REDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP-----AE 249 (319)
T ss_dssp -------------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC-----HH
T ss_pred cccc--------cccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC-----HH
Confidence 1110 0111223469999999999874 457889999999999999999999986421 11
Q ss_pred HHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcCCC
Q 042568 896 EWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLSSP 972 (983)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~~~ 972 (983)
. ..........+. .. . ..++.++.+++.+|++.||++|||+.|+++.|+++.+.....
T Consensus 250 ~------------~~~~~~~~~~~~-~~---~---~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~~~ 307 (319)
T 2y4i_B 250 A------------IIWQMGTGMKPN-LS---Q---IGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRRL 307 (319)
T ss_dssp H------------HHHHHHTTCCCC-CC---C---SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-------
T ss_pred H------------HHHHhccCCCCC-CC---c---CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhccC
Confidence 1 111111111110 00 0 113356889999999999999999999999999987765443
No 261
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=4.7e-36 Score=336.77 Aligned_cols=268 Identities=20% Similarity=0.287 Sum_probs=200.3
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCc-chhHHHHHHHHHHHhcCCCCccceeeEEecCCc-----
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTG-EITGSFKRECQILKRIRHRNLIRIITICSKPDF----- 738 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 738 (983)
.++|...+.||+|+||.||+|... +|+.||||++...... ...+++.+|+.++++++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 357888999999999999999965 6889999999665433 345788999999999999999999999977654
Q ss_pred -eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccc
Q 042568 739 -KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGI 817 (983)
Q Consensus 739 -~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgl 817 (983)
.++||||++ ++|.+++. ..+++..+..++.|+++||+|||+++ |+||||||+||+++.++.+||+|||+
T Consensus 103 ~~~lv~e~~~-~~l~~~~~------~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~ 172 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMG------LKFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGL 172 (353)
T ss_dssp CCEEEEECCS-EEGGGTTT------SCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTCCEEECSTTC
T ss_pred eEEEEecccc-CCHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEeECCCCcEEEeeccc
Confidence 499999998 58887764 24899999999999999999999996 99999999999999999999999999
Q ss_pred cccccCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHH
Q 042568 818 AKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHE 896 (983)
Q Consensus 818 a~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~ 896 (983)
++..... .....||+.|+|||.+.+ ..++.++||||+|+++|||++|+.||..... ...+..
T Consensus 173 ~~~~~~~----------------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-~~~~~~ 235 (353)
T 3coi_A 173 ARHADAE----------------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY-LDQLTQ 235 (353)
T ss_dssp TTC------------------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCH-HHHHHH
T ss_pred ccCCCCC----------------ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHH
Confidence 9764321 112468999999999887 6789999999999999999999999864211 011111
Q ss_pred HHHhhC-C------CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 897 WVKRHY-P------HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 897 ~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.....- + ..........+...... ........+.....++.+++.+|++.||++|||++|++++
T Consensus 236 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 306 (353)
T 3coi_A 236 ILKVTGVPGTEFVQKLNDKAAKSYIQSLPQT-PRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 306 (353)
T ss_dssp HHHHHCBCCHHHHTTCSCHHHHHHHHTSCBC-SSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHHhCCCCHHHHHHHhhHHHHHHHHhCcCC-CCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 111100 0 00111111112111111 1111112233456789999999999999999999999976
No 262
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=3.3e-36 Score=329.68 Aligned_cols=253 Identities=25% Similarity=0.345 Sum_probs=203.6
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--------cchhHHHHHHHHHHHhcC-CCCccceeeEEec
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--------GEITGSFKRECQILKRIR-HRNLIRIITICSK 735 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--------~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~ 735 (983)
.++|...+.||+|+||.||+|... +++.||||+++.... ....+.+.+|++++++++ ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 468889999999999999999975 688899999965431 123467889999999995 9999999999999
Q ss_pred CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccc
Q 042568 736 PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADF 815 (983)
Q Consensus 736 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Df 815 (983)
....++||||+++++|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+||
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~----~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~df 168 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTE----KVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDF 168 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCC
T ss_pred CCeEEEEEeccCCCcHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEcCCCcEEEecc
Confidence 9999999999999999999874 345899999999999999999999996 999999999999999999999999
Q ss_pred cccccccCCcccccccCCCCccccccCccccccccccccccC------CCCCCccchhHHHHHHHHHHHhCCCCCCcccC
Q 042568 816 GIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM------GKRASTHGDVYSFGVLLLEIVTGRRPTDVLFH 889 (983)
Q Consensus 816 gla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~ 889 (983)
|.+........ .....||+.|+|||.+. ...++.++||||||+++|||++|+.||....
T Consensus 169 g~~~~~~~~~~--------------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~- 233 (298)
T 1phk_A 169 GFSCQLDPGEK--------------LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK- 233 (298)
T ss_dssp TTCEECCTTCC--------------BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS-
T ss_pred cchhhcCCCcc--------------cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCcc-
Confidence 99987643221 12246899999999875 4567899999999999999999999985321
Q ss_pred CCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 890 DGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 890 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.. .............. ...+...+.++.+++.+|++.||++|||+.|++++
T Consensus 234 ----~~------------~~~~~~~~~~~~~~-----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 284 (298)
T 1phk_A 234 ----QM------------LMLRMIMSGNYQFG-----SPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH 284 (298)
T ss_dssp ----HH------------HHHHHHHHTCCCCC-----TTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred ----HH------------HHHHHHhcCCcccC-----cccccccCHHHHHHHHHHccCCcccCCCHHHHHhC
Confidence 01 11111111111110 11223456789999999999999999999999874
No 263
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=1.7e-36 Score=346.47 Aligned_cols=271 Identities=19% Similarity=0.246 Sum_probs=199.6
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcC--------CCCccceeeEEe--
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIR--------HRNLIRIITICS-- 734 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~-- 734 (983)
.++|.+.++||+|+||.||+|+.. +++.||||+++.. ....+.+.+|++++++++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~ 113 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA--EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS 113 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC--CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec
Confidence 368999999999999999999964 6788999998643 234578899999999996 788999999987
Q ss_pred --cCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhcc-CCCCeEeecCCCCCeEeCCCC---
Q 042568 735 --KPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHH-SPIKVVHCDLKPSNILLDEDL--- 808 (983)
Q Consensus 735 --~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~-~~~~ivH~Dikp~NiLl~~~~--- 808 (983)
.....++||||+. +++.+++.... ...+++..++.++.|+++||+|||++ + |+||||||+|||++.++
T Consensus 114 ~~~~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~i~~qi~~aL~~lH~~~g---ivHrDikp~NIll~~~~~~~ 187 (397)
T 1wak_A 114 GVNGTHICMVFEVLG-HHLLKWIIKSN--YQGLPLPCVKKIIQQVLQGLDYLHTKCR---IIHTDIKPENILLSVNEQYI 187 (397)
T ss_dssp ETTEEEEEEEECCCC-CBHHHHHHHTT--TSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECCCCSGGGEEECCCHHHH
T ss_pred CCCCceEEEEEeccC-ccHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHeeEeccchhh
Confidence 5567899999995 55555554322 34699999999999999999999998 6 99999999999999775
Q ss_pred ----------------------------------------------CEEEccccccccccCCcccccccCCCCccccccC
Q 042568 809 ----------------------------------------------TALVADFGIAKLVKGIDESVNCANDSMSFTSTDG 842 (983)
Q Consensus 809 ----------------------------------------------~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~ 842 (983)
.+||+|||+|+..... ..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----------------~~ 251 (397)
T 1wak_A 188 RRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----------------FT 251 (397)
T ss_dssp HHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----------------SC
T ss_pred hhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----------------Cc
Confidence 8999999999865421 12
Q ss_pred ccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCc-----hHHHHHhhCCCCCcHHHHHHH-h-
Q 042568 843 LLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSS-----LHEWVKRHYPHRLDPIVEKAI-A- 915 (983)
Q Consensus 843 ~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~-~- 915 (983)
...||+.|+|||++.+..++.++|||||||++|||++|+.||......... +...... ........+.... .
T Consensus 252 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~ 330 (397)
T 1wak_A 252 EDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIEL-LGKVPRKLIVAGKYSK 330 (397)
T ss_dssp SCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHH-HCSCCHHHHHHCTTGG
T ss_pred cCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHh-cCCCChHHhhcccccc
Confidence 246899999999999999999999999999999999999999753322111 1111110 0000000000000 0
Q ss_pred hcCC--CCCccc--------------cccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 916 KYAP--QHMPIY--------------YNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 916 ~~~~--~~~~~~--------------~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.... ...... ......+...++.+++.+|++.||++|||++|++++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 392 (397)
T 1wak_A 331 EFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH 392 (397)
T ss_dssp GTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred cccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence 0000 000000 001124567889999999999999999999999875
No 264
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=3.1e-36 Score=336.37 Aligned_cols=267 Identities=19% Similarity=0.271 Sum_probs=202.3
Q ss_pred CCCCCCCccccCCcEeEEEEEE-C-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCC------ccceeeEEecCCc
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-Q-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRN------LIRIITICSKPDF 738 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~ 738 (983)
++|.+.+.||+|+||.||+|.. . +++.||||+++.. ....+.+.+|+++++.++|++ ++++++++...+.
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV--DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS--HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC--CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 5788899999999999999986 3 5788999998643 234577889999999987654 9999999999999
Q ss_pred eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC------------
Q 042568 739 KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE------------ 806 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~------------ 806 (983)
.++||||+ +++|.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~~~~~~ 165 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENG--FLPFRLDHIRKMAYQICKSVNFLHSNK---LTHTDLKPENILFVQSDYTEAYNPKIK 165 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCCCEEEEEC----
T ss_pred EEEEEcCC-CCCHHHHHHhcC--CCCCcHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeccccccccCCccc
Confidence 99999999 789999887543 346899999999999999999999996 999999999999987
Q ss_pred -------CCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh
Q 042568 807 -------DLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT 879 (983)
Q Consensus 807 -------~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt 879 (983)
++.+||+|||+++..... .....||+.|+|||.+.+..++.++||||||+++|||++
T Consensus 166 ~~~~~~~~~~~kl~Dfg~~~~~~~~----------------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~ 229 (339)
T 1z57_A 166 RDERTLINPDIKVVDFGSATYDDEH----------------HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYL 229 (339)
T ss_dssp CEEEEESCCCEEECCCSSCEETTSC----------------CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCceEeeCcccccCccc----------------cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHh
Confidence 678999999999864321 122468999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCCchHHHHHhhCCCCCcHHHH----------------------HHHhhcCCCCCccccccchHHHHHHH
Q 042568 880 GRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVE----------------------KAIAKYAPQHMPIYYNKVWSDVVLEL 937 (983)
Q Consensus 880 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l 937 (983)
|+.||.... .......+............. ......... .. ...........++
T Consensus 230 g~~pf~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l 305 (339)
T 1z57_A 230 GFTVFPTHD--SKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKP-LK-EFMLSQDVEHERL 305 (339)
T ss_dssp SSCSCCCSC--HHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCC-GG-GGCSCCSHHHHHH
T ss_pred CCCCCCCCC--hHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcc-hh-hhcccchhhHHHH
Confidence 999986421 111111111111111011100 000000000 00 0001123467889
Q ss_pred HHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 938 IELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 938 ~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.+++.+|++.||++|||++|++++
T Consensus 306 ~~li~~~L~~dP~~Rpt~~ell~h 329 (339)
T 1z57_A 306 FDLIQKMLEYDPAKRITLREALKH 329 (339)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred HHHHHHHhCcCcccccCHHHHhcC
Confidence 999999999999999999999976
No 265
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=2.2e-36 Score=364.31 Aligned_cols=259 Identities=22% Similarity=0.382 Sum_probs=205.5
Q ss_pred hCCCCCCCccccCCcEeEEEEEECC----CcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeE
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQD----NTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~~----~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 741 (983)
.++|...+.||+|+||.||+|.+.. +..||||.++........+.+.+|+.++++++||||+++++++. .+..++
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~l 467 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 467 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEE
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEE
Confidence 3567778899999999999999742 45699999876555556688999999999999999999999985 456899
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
||||+++|+|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+|||++.++.+||+|||+++..
T Consensus 468 v~E~~~~g~L~~~l~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDikp~NILl~~~~~vkL~DFG~a~~~ 541 (656)
T 2j0j_A 468 IMELCTLGELRSFLQVR---KFSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYM 541 (656)
T ss_dssp EEECCTTCBHHHHHHHT---TTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCCCCSC
T ss_pred EEEcCCCCcHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchHhEEEeCCCCEEEEecCCCeec
Confidence 99999999999998743 345899999999999999999999996 999999999999999999999999999876
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHHHHHh
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHEWVKR 900 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~~~~~ 900 (983)
..... .......||+.|+|||.+.+..++.++||||||+++|||++ |+.||.... ..+
T Consensus 542 ~~~~~------------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~-----~~~---- 600 (656)
T 2j0j_A 542 EDSTY------------YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK-----NND---- 600 (656)
T ss_dssp CC----------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-----HHH----
T ss_pred CCCcc------------eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCC-----HHH----
Confidence 43221 11122357889999999998899999999999999999997 999986421 111
Q ss_pred hCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhh
Q 042568 901 HYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQY 968 (983)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~ 968 (983)
........ .....+ ..++.++.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 601 --------~~~~i~~~-~~~~~~-------~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 601 --------VIGRIENG-ERLPMP-------PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp --------HHHHHHHT-CCCCCC-------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHcC-CCCCCC-------ccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 11111111 111111 22456889999999999999999999999999998643
No 266
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=333.48 Aligned_cols=274 Identities=19% Similarity=0.259 Sum_probs=195.7
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEe----------
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICS---------- 734 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~---------- 734 (983)
.++|...+.||+|+||.||+|... +++.||||++.... ....+++.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 88 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTD-PQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDV 88 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCS-HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC--
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCC-hHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccc
Confidence 357888999999999999999976 48899999986543 335678899999999999999999999873
Q ss_pred ----cCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeC-CCCC
Q 042568 735 ----KPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLD-EDLT 809 (983)
Q Consensus 735 ----~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~-~~~~ 809 (983)
.....++||||++ |+|.+++. ...+++..++.++.|+++||+|||+++ |+||||||+||+++ +++.
T Consensus 89 ~~~~~~~~~~lv~e~~~-~~L~~~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~ 159 (320)
T 2i6l_A 89 GSLTELNSVYIVQEYME-TDLANVLE-----QGPLLEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANLFINTEDLV 159 (320)
T ss_dssp --CCSCSEEEEEEECCS-EEHHHHHT-----TCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTTE
T ss_pred ccccccCceeEEeeccC-CCHHHHhh-----cCCccHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCe
Confidence 3457799999998 69998886 345899999999999999999999996 99999999999997 5679
Q ss_pred EEEccccccccccCCcccccccCCCCccccccCccccccccccccccCC-CCCCccchhHHHHHHHHHHHhCCCCCCccc
Q 042568 810 ALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-KRASTHGDVYSFGVLLLEIVTGRRPTDVLF 888 (983)
Q Consensus 810 ~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~k~Dv~SlG~il~elltg~~p~~~~~ 888 (983)
+||+|||+++........ ........||..|+|||.+.+ ..++.++||||||+++|||++|+.||....
T Consensus 160 ~kl~Dfg~~~~~~~~~~~----------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 229 (320)
T 2i6l_A 160 LKIGDFGLARIMDPHYSH----------KGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAH 229 (320)
T ss_dssp EEECCCTTCBCC------------------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred EEEccCccccccCCCccc----------ccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCC
Confidence 999999999876432111 011223468999999998765 678999999999999999999999986421
Q ss_pred CCCCchHHHHHhhCCCCCcHHHHHHHhh-------cCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 889 HDGSSLHEWVKRHYPHRLDPIVEKAIAK-------YAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 889 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
. ......+....+....+........ ..... .......+...+.++.+++.+|++.||++|||++|++++
T Consensus 230 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (320)
T 2i6l_A 230 E--LEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEP-HKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH 306 (320)
T ss_dssp H--HHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSC-CCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred H--HHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCC-CCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence 1 1111111122221111111111100 00000 000011112356789999999999999999999999986
Q ss_pred H
Q 042568 962 M 962 (983)
Q Consensus 962 L 962 (983)
-
T Consensus 307 p 307 (320)
T 2i6l_A 307 P 307 (320)
T ss_dssp H
T ss_pred c
Confidence 3
No 267
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=1.6e-36 Score=336.83 Aligned_cols=259 Identities=22% Similarity=0.243 Sum_probs=181.6
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHH-HHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQ-ILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
++|...+.||+|+||.||+|... +++.||||+++.........++.+|+. +++.++||||+++++++...+..++|||
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e 101 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME 101 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence 57888999999999999999975 688999999976654444556667776 6777899999999999999999999999
Q ss_pred cccCccccccccccc-CcCCCCCHHHHHHHHHHHHHHHHHHhcc-CCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 745 LMSNGSLENHLYPSH-GLSHGLDLIQLVKICSDVAEGVAYLHHH-SPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~-~~~~~l~~~~~~~i~~~ia~aL~~LH~~-~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
|+++ +|.+++.... .....+++..+..++.|+++||.|||+. + |+||||||+||+++.++.+||+|||+++...
T Consensus 102 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~---ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~ 177 (327)
T 3aln_A 102 LMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK---IIHRDIKPSNILLDRSGNIKLCDFGISGQLV 177 (327)
T ss_dssp CCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHS---CCCSCCCGGGEEEETTTEEEECCCSSSCC--
T ss_pred ecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCC---EeECCCCHHHEEEcCCCCEEEccCCCceecc
Confidence 9985 7776664311 1145689999999999999999999998 6 9999999999999999999999999998664
Q ss_pred CCcccccccCCCCccccccCcccccccccccccc----CCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHH
Q 042568 823 GIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYG----MGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWV 898 (983)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~ 898 (983)
.... .....||+.|+|||.+ .+..++.++||||||+++|||++|+.||....... +.+
T Consensus 178 ~~~~--------------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~----~~~ 239 (327)
T 3aln_A 178 DSIA--------------KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF----DQL 239 (327)
T ss_dssp ------------------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------
T ss_pred cccc--------------cccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH----HHH
Confidence 3211 1123699999999998 45678999999999999999999999986421110 000
Q ss_pred HhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 899 KRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
. .......+......+.....++.+++.+|++.||++|||+.|++++-.
T Consensus 240 ~----------------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~ 288 (327)
T 3aln_A 240 T----------------QVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPF 288 (327)
T ss_dssp C----------------CCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHH
T ss_pred H----------------HHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhChH
Confidence 0 000000111111111234567899999999999999999999997543
No 268
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=5.6e-36 Score=330.30 Aligned_cols=257 Identities=22% Similarity=0.331 Sum_probs=198.0
Q ss_pred HHhCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccC-cchhHHHHHHHHHHHhcC--CCCccceeeEEecCCcee
Q 042568 664 EATGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTT-GEITGSFKRECQILKRIR--HRNLIRIITICSKPDFKA 740 (983)
Q Consensus 664 ~~~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~ 740 (983)
...++|.+.+.||+|+||.||+|...+++.||||++..... ....+.+.+|++++++++ ||||+++++++...+..+
T Consensus 25 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~ 104 (313)
T 3cek_A 25 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY 104 (313)
T ss_dssp ETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEE
T ss_pred eccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEE
Confidence 34567889999999999999999988899999999976543 334678999999999997 599999999999999999
Q ss_pred EEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEcccccccc
Q 042568 741 LVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKL 820 (983)
Q Consensus 741 lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~ 820 (983)
+||| +.+++|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+||++++ +.+||+|||+++.
T Consensus 105 lv~e-~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~ 175 (313)
T 3cek_A 105 MVME-CGNIDLNSWLKKK----KSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIVD-GMLKLIDFGIANQ 175 (313)
T ss_dssp EEEC-CCSEEHHHHHHHC----SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEET-TEEEECCCSSSCC
T ss_pred EEEe-cCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEEEC-CeEEEeecccccc
Confidence 9999 5678999998753 46899999999999999999999996 999999999999964 8999999999987
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccCC-----------CCCCccchhHHHHHHHHHHHhCCCCCCcccC
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-----------KRASTHGDVYSFGVLLLEIVTGRRPTDVLFH 889 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~k~Dv~SlG~il~elltg~~p~~~~~~ 889 (983)
....... .......||+.|+|||.+.+ ..++.++||||||+++|||++|+.||.....
T Consensus 176 ~~~~~~~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~ 244 (313)
T 3cek_A 176 MQPDTTS-----------VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN 244 (313)
T ss_dssp -------------------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCS
T ss_pred ccCcccc-----------ccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 6532211 11123469999999999875 4688899999999999999999999864211
Q ss_pred CCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 890 DGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 890 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
. .. .....+........+. ....++.+++.+|++.||++||+++|++++-.
T Consensus 245 ~---~~-------------~~~~~~~~~~~~~~~~-------~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~ 295 (313)
T 3cek_A 245 Q---IS-------------KLHAIIDPNHEIEFPD-------IPEKDLQDVLKCCLKRDPKQRISIPELLAHPY 295 (313)
T ss_dssp H---HH-------------HHHHHHCTTSCCCCCC-------CSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred H---HH-------------HHHHHHhcccccCCcc-------cchHHHHHHHHHHccCCcccCcCHHHHhcCcc
Confidence 1 00 1111111111111111 12457889999999999999999999998754
No 269
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=343.27 Aligned_cols=279 Identities=21% Similarity=0.252 Sum_probs=184.2
Q ss_pred CCCC-CCccccCCcEeEEEEEEC---CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEe--cCCceeE
Q 042568 668 GFCP-SSLIGSGRFGHVYKGVLQ---DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICS--KPDFKAL 741 (983)
Q Consensus 668 ~f~~-~~~iG~G~~g~Vy~~~~~---~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~~l 741 (983)
.|.+ .++||+|+||.||+|++. +++.||||++..... ...+.+|++++++++||||+++++++. .....++
T Consensus 21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI---SMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC---CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC---CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 3444 568999999999999965 577899999964432 357889999999999999999999994 4678899
Q ss_pred EEecccCcccccccccccC-----cCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe----CCCCCEEE
Q 042568 742 VLPLMSNGSLENHLYPSHG-----LSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL----DEDLTALV 812 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~-----~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl----~~~~~~kl 812 (983)
||||+++ +|.+++..... ....+++..++.|+.|++.||+|||+.+ |+||||||+|||+ +.++.+||
T Consensus 98 v~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl 173 (405)
T 3rgf_A 98 LFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKI 173 (405)
T ss_dssp EEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred EEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeCCCcCHHHeEEecCCCCCCcEEE
Confidence 9999975 77766643221 1235899999999999999999999996 9999999999999 77899999
Q ss_pred ccccccccccCCcccccccCCCCccccccCccccccccccccccCCC-CCCccchhHHHHHHHHHHHhCCCCCCcccCCC
Q 042568 813 ADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGK-RASTHGDVYSFGVLLLEIVTGRRPTDVLFHDG 891 (983)
Q Consensus 813 ~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~ 891 (983)
+|||+|+........ ........||+.|+|||++.+. .++.++||||+||++|||++|+.||.....+.
T Consensus 174 ~Dfg~a~~~~~~~~~----------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~ 243 (405)
T 3rgf_A 174 ADMGFARLFNSPLKP----------LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDI 243 (405)
T ss_dssp CCTTCCC--------------------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC---
T ss_pred EECCCceecCCCCcc----------cccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccc
Confidence 999999876532111 0122335799999999998874 58999999999999999999999996432210
Q ss_pred --------CchHHHHHhhC-CCC--CcHH-----HHHHHhhcCCCCCcc-----ccccchHHHHHHHHHHHhhhcCCCCC
Q 042568 892 --------SSLHEWVKRHY-PHR--LDPI-----VEKAIAKYAPQHMPI-----YYNKVWSDVVLELIELGLLCTQYNPS 950 (983)
Q Consensus 892 --------~~l~~~~~~~~-~~~--~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~l~~~cl~~dP~ 950 (983)
..+..++...- +.. .... ............... ...........++.+|+.+|++.||+
T Consensus 244 ~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~ 323 (405)
T 3rgf_A 244 KTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPI 323 (405)
T ss_dssp ---CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGG
T ss_pred cccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcc
Confidence 01111111100 000 0000 000000000000000 00000000145688999999999999
Q ss_pred CCCCHHHHHHHHH
Q 042568 951 TRPSMLDVAHEMG 963 (983)
Q Consensus 951 ~RPs~~evl~~L~ 963 (983)
+|||++|+++|=.
T Consensus 324 ~R~ta~e~L~hp~ 336 (405)
T 3rgf_A 324 KRITSEQAMQDPY 336 (405)
T ss_dssp GSCCHHHHHTSGG
T ss_pred cCCCHHHHhcChh
Confidence 9999999998754
No 270
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=6.4e-36 Score=325.43 Aligned_cols=253 Identities=25% Similarity=0.384 Sum_probs=203.2
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC-cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEE
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT-GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 742 (983)
..++|.+.+.||+|+||.||+|... +++.||||++..... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 99 (287)
T 2wei_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (287)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence 3467899999999999999999975 688999999865432 33467899999999999999999999999999999999
Q ss_pred EecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCC---CCEEEccccccc
Q 042568 743 LPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDED---LTALVADFGIAK 819 (983)
Q Consensus 743 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~---~~~kl~Dfgla~ 819 (983)
+||+++++|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+||+++.+ +.+||+|||+++
T Consensus 100 ~e~~~~~~L~~~l~~~----~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~ 172 (287)
T 2wei_A 100 GELYTGGELFDEIIKR----KRFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLST 172 (287)
T ss_dssp ECCCCSCBHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred EEccCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChhhEEEecCCCcccEEEeccCcce
Confidence 9999999998887643 35899999999999999999999996 9999999999999754 479999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
...... ......||+.|+|||.+.+. ++.++||||||+++|+|++|+.||.... ..+
T Consensus 173 ~~~~~~--------------~~~~~~~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~-----~~~--- 229 (287)
T 2wei_A 173 CFQQNT--------------KMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKN-----EYD--- 229 (287)
T ss_dssp TBCCCS--------------SCSCHHHHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHH---
T ss_pred eecCCC--------------ccccccCcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCCCCCCCCC-----HHH---
Confidence 654321 11224689999999988764 8899999999999999999999986421 111
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
..............+ .+...+.++.+++.+|++.||++|||+.|++++
T Consensus 230 ---------~~~~~~~~~~~~~~~-----~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 277 (287)
T 2wei_A 230 ---------ILKRVETGKYAFDLP-----QWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (287)
T ss_dssp ---------HHHHHHHCCCCCCSG-----GGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred ---------HHHHHHcCCCCCCch-----hhhhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence 111111111111111 123355788999999999999999999999985
No 271
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=4.8e-36 Score=332.99 Aligned_cols=275 Identities=22% Similarity=0.280 Sum_probs=202.8
Q ss_pred HhCCCCCCCccccCCcEeEEEEEE--CCCcEEEEEEeecccCc-chhHHHHHHHHHHHhc---CCCCccceeeEEe----
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVL--QDNTRIAVKVLDLTTTG-EITGSFKRECQILKRI---RHRNLIRIITICS---- 734 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~--~~~~~vAvK~~~~~~~~-~~~~~~~~E~~~l~~l---~h~niv~l~~~~~---- 734 (983)
+.++|.+.+.||+|+||.||+|.. .+++.||||+++..... .....+.+|+++++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 457899999999999999999997 36788999998654322 2345677888888777 8999999999986
Q ss_pred -cCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEc
Q 042568 735 -KPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVA 813 (983)
Q Consensus 735 -~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~ 813 (983)
.....++||||++ |+|.+++.... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++.+||+
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~g---i~H~dlkp~Nili~~~~~~kl~ 162 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVP--EPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLA 162 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSC--TTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEEC
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHHHeEEcCCCCEEEe
Confidence 5567899999998 59999887543 345899999999999999999999996 9999999999999999999999
Q ss_pred cccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCc
Q 042568 814 DFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSS 893 (983)
Q Consensus 814 Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~ 893 (983)
|||+++...... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||..... ...
T Consensus 163 Dfg~~~~~~~~~--------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~ 227 (326)
T 1blx_A 163 DFGLARIYSFQM--------------ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD-VDQ 227 (326)
T ss_dssp SCCSCCCCCGGG--------------GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHH
T ss_pred cCcccccccCCC--------------CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCH-HHH
Confidence 999998654221 11234689999999999999999999999999999999999999864211 011
Q ss_pred hHHHHHhhCCCCCcHHHHHHH---hhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 894 LHEWVKRHYPHRLDPIVEKAI---AKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 894 l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
+...+.......... ..... ...............+.+.+.++.+++.+|++.||++|||+.|++++
T Consensus 228 ~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 297 (326)
T 1blx_A 228 LGKILDVIGLPGEED-WPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH 297 (326)
T ss_dssp HHHHHHHHCCCCGGG-SCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHcCCCCccc-CccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 111111100000000 00000 00000000001111223456788999999999999999999999975
No 272
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5e-36 Score=329.81 Aligned_cols=258 Identities=31% Similarity=0.511 Sum_probs=202.5
Q ss_pred cccEEeccccccCC--CCCcccccCCCCcEEEeeC-CcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhh
Q 042568 332 NLTLLNLSSNLLNG--TIPHELCLMSKLERVYLSN-NSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRL 408 (983)
Q Consensus 332 ~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 408 (983)
+++.|+|++|.+++ .+|..+..+++|++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..|.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555666666655 5555666666666666663 66666666666666666666666666666666666666666666
Q ss_pred cccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCC-ccceeccccCCCCCCCCccccccccccccccccccc
Q 042568 409 LLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLR-SLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNN 487 (983)
Q Consensus 409 ~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 487 (983)
++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ .|+. |++++|++++.+|..+..+. |+.|+|++|+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~-L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS-MTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE-EECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE-EECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 6666666666777777777777777777777777777777776 6774 77777777777777787776 8889999999
Q ss_pred cccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCCC
Q 042568 488 LSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISNK 567 (983)
Q Consensus 488 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~ 567 (983)
+++.+|..|..+++|+.|+|++|++++.+|. +..+++|+.|+|++|++++.+|..|..+++|++|++++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9888888999999999999999999977766 788999999999999999999999999999999999999999999998
Q ss_pred CCCcccccccccCCcCccCCCCCcccc
Q 042568 568 GAFSSLTIASFQGNDGLCGEIKGLQTC 594 (983)
Q Consensus 568 ~~~~~~~~~~~~~N~~lc~~~~~~~~c 594 (983)
+.++.+..+.+.+|+++||.|. +.|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~--~~C 312 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPL--PAC 312 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTS--SCC
T ss_pred ccccccChHHhcCCCCccCCCC--CCC
Confidence 8999999999999999999874 356
No 273
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=5.3e-36 Score=345.06 Aligned_cols=256 Identities=22% Similarity=0.290 Sum_probs=187.5
Q ss_pred CCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeEEEecc
Q 042568 668 GFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKALVLPLM 746 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~ 746 (983)
.|...++||+|+||+||.+...+|+.||||++... ..+.+.+|+++++++ +||||+++++++...+..++||||+
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~----~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~ 91 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID----FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC 91 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG----GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecC
Confidence 34456789999999998777778999999998543 245678999999987 8999999999999999999999999
Q ss_pred cCcccccccccccCcCCC---CCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCC-------------CCE
Q 042568 747 SNGSLENHLYPSHGLSHG---LDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDED-------------LTA 810 (983)
Q Consensus 747 ~~gsL~~~l~~~~~~~~~---l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~-------------~~~ 810 (983)
+ |+|.+++......... .++..++.++.||++||+|||+.+ |+||||||+|||++.+ +.+
T Consensus 92 ~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~ 167 (434)
T 2rio_A 92 N-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK---IIHRDLKPQNILVSTSSRFTADQQTGAENLRI 167 (434)
T ss_dssp S-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEECCHHHHSCCTTCCCSCEE
T ss_pred C-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCcccccccccCCCceEE
Confidence 6 6999998754322111 133456789999999999999996 9999999999999654 489
Q ss_pred EEccccccccccCCcccccccCCCCccccccCccccccccccccccCC-------CCCCccchhHHHHHHHHHHHh-CCC
Q 042568 811 LVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG-------KRASTHGDVYSFGVLLLEIVT-GRR 882 (983)
Q Consensus 811 kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~k~Dv~SlG~il~ellt-g~~ 882 (983)
||+|||+++......... ........||+.|+|||++.+ ..++.++|||||||++|||++ |+.
T Consensus 168 kL~DFG~a~~~~~~~~~~---------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~ 238 (434)
T 2rio_A 168 LISDFGLCKKLDSGQSSF---------RTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKH 238 (434)
T ss_dssp EECCCTTCEECCC-----------------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCC
T ss_pred EEcccccceecCCCCccc---------eeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCC
Confidence 999999998775432110 111233579999999999876 678999999999999999999 999
Q ss_pred CCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 883 PTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 883 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
||..... ....++. ..... +..........+.++.+++.+|++.||++|||+.|++++
T Consensus 239 Pf~~~~~---~~~~i~~----------------~~~~~--~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h 296 (434)
T 2rio_A 239 PFGDKYS---RESNIIR----------------GIFSL--DEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRH 296 (434)
T ss_dssp TTCSTTT---HHHHHHH----------------TCCCC--CCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred CCCCchh---hHHHHhc----------------CCCCc--ccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHhC
Confidence 9853211 0111111 11110 000111124567889999999999999999999999863
No 274
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=5.6e-36 Score=333.25 Aligned_cols=255 Identities=21% Similarity=0.305 Sum_probs=175.3
Q ss_pred hCCCCCCC-ccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHH-HHHhcCCCCccceeeEEec----CCc
Q 042568 666 TGGFCPSS-LIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQ-ILKRIRHRNLIRIITICSK----PDF 738 (983)
Q Consensus 666 ~~~f~~~~-~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~----~~~ 738 (983)
.++|.+.+ +||+|+||.||+|... +++.||||++... ....+|+. .++.++||||+++++++.. ...
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 100 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS------PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRC 100 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc------HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCce
Confidence 46787744 6999999999999976 6899999998542 22233333 4566799999999999865 445
Q ss_pred eeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC---CCCEEEccc
Q 042568 739 KALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE---DLTALVADF 815 (983)
Q Consensus 739 ~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~---~~~~kl~Df 815 (983)
.++||||+++|+|.+++.... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++. ++.+||+||
T Consensus 101 ~~lv~e~~~gg~L~~~l~~~~--~~~l~~~~~~~i~~ql~~~l~~LH~~~---ivH~dlkp~NIll~~~~~~~~~kl~Df 175 (336)
T 3fhr_A 101 LLIIMECMEGGELFSRIQERG--DQAFTEREAAEIMRDIGTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDF 175 (336)
T ss_dssp EEEEEECCTTEEHHHHHHTC---CCCCBHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCC
T ss_pred EEEEEeccCCCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEEecCCCceEEEecc
Confidence 799999999999999997543 346999999999999999999999996 999999999999986 455999999
Q ss_pred cccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchH
Q 042568 816 GIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLH 895 (983)
Q Consensus 816 gla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~ 895 (983)
|+++...... .....||+.|+|||++.+..++.++||||+|+++|+|++|+.||........ .
T Consensus 176 g~~~~~~~~~---------------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~ 238 (336)
T 3fhr_A 176 GFAKETTQNA---------------LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAI--S 238 (336)
T ss_dssp TTCEEC-------------------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------
T ss_pred ccceeccccc---------------cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhh--h
Confidence 9998654211 1234689999999999888899999999999999999999999864321110 0
Q ss_pred HHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHH
Q 042568 896 EWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGR 964 (983)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~ 964 (983)
......+.... ...+ ...+..++.++.+++.+|++.||++|||++|++++-.-
T Consensus 239 ------------~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~ 291 (336)
T 3fhr_A 239 ------------PGMKRRIRLGQ-YGFP---NPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWI 291 (336)
T ss_dssp -------------------------CCC---TTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHH
T ss_pred ------------hhHHHhhhccc-cccC---chhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccc
Confidence 00000000000 0000 11123456789999999999999999999999986553
No 275
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=3.9e-36 Score=332.32 Aligned_cols=242 Identities=26% Similarity=0.358 Sum_probs=197.9
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcc-----hhHHHHHHHHHHHhcC--CCCccceeeEEecCC
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGE-----ITGSFKRECQILKRIR--HRNLIRIITICSKPD 737 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~-----~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~ 737 (983)
.++|...+.||+|+||.||+|... +++.||||++....... ...++.+|++++++++ |+||+++++++...+
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~ 121 (320)
T 3a99_A 42 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD 121 (320)
T ss_dssp TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCC
Confidence 467889999999999999999964 68889999997654321 2356788999999996 599999999999999
Q ss_pred ceeEEEecccC-cccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeC-CCCCEEEccc
Q 042568 738 FKALVLPLMSN-GSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLD-EDLTALVADF 815 (983)
Q Consensus 738 ~~~lv~e~~~~-gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~-~~~~~kl~Df 815 (983)
..++|+||+.+ ++|.+++.. ...+++..++.++.|+++||+|||+.+ |+||||||+||+++ +++.+||+||
T Consensus 122 ~~~lv~e~~~~~~~L~~~l~~----~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~kL~Df 194 (320)
T 3a99_A 122 SFVLILERPEPVQDLFDFITE----RGALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDF 194 (320)
T ss_dssp EEEEEEECCSSEEEHHHHHHH----HCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCC
T ss_pred cEEEEEEcCCCCccHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHHHCC---cEeCCCCHHHEEEeCCCCCEEEeeC
Confidence 99999999986 899998875 345899999999999999999999996 99999999999999 7899999999
Q ss_pred cccccccCCcccccccCCCCccccccCccccccccccccccCCCCC-CccchhHHHHHHHHHHHhCCCCCCcccCCCCch
Q 042568 816 GIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRA-STHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSL 894 (983)
Q Consensus 816 gla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l 894 (983)
|+++...... .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||....
T Consensus 195 g~~~~~~~~~---------------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~------ 253 (320)
T 3a99_A 195 GSGALLKDTV---------------YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------ 253 (320)
T ss_dssp TTCEECCSSC---------------BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------
T ss_pred cccccccccc---------------ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh------
Confidence 9998764321 112469999999999887665 688999999999999999999986310
Q ss_pred HHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 895 HEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
.... .... .+ ...+.++.+++.+|++.||++|||++|++++
T Consensus 254 -~~~~----------------~~~~--~~-------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 294 (320)
T 3a99_A 254 -EIIR----------------GQVF--FR-------QRVSSECQHLIRWCLALRPSDRPTFEEIQNH 294 (320)
T ss_dssp -HHHH----------------CCCC--CS-------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred -hhhc----------------cccc--cc-------ccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 1100 0000 00 1134678899999999999999999999975
No 276
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=2.1e-35 Score=334.90 Aligned_cols=200 Identities=24% Similarity=0.339 Sum_probs=169.1
Q ss_pred HhCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcC-CC-----CccceeeEEecCC
Q 042568 665 ATGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIR-HR-----NLIRIITICSKPD 737 (983)
Q Consensus 665 ~~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~~ 737 (983)
..++|.+.+.||+|+||.||+|... +++.||||+++.. .....++.+|+++++.++ |+ +|+++++++...+
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~ 129 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK--KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN 129 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS--HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc--HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence 3578999999999999999999965 6788999999643 234567888999999885 55 4999999999999
Q ss_pred ceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeC--CCCCEEEccc
Q 042568 738 FKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLD--EDLTALVADF 815 (983)
Q Consensus 738 ~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~--~~~~~kl~Df 815 (983)
..++||||++ |+|.+++.... ...+++..++.++.|++.||+|||.+. .+|+||||||+|||++ .++.+||+||
T Consensus 130 ~~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~~-~~ivHrDlkp~NIll~~~~~~~~kL~DF 205 (382)
T 2vx3_A 130 HLCLVFEMLS-YNLYDLLRNTN--FRGVSLNLTRKFAQQMCTALLFLATPE-LSIIHCDLKPENILLCNPKRSAIKIVDF 205 (382)
T ss_dssp EEEEEEECCC-CBHHHHHHHTT--TSCCCHHHHHHHHHHHHHHHHHHTSTT-TCEECCCCSGGGEEESSTTSCCEEECCC
T ss_pred ceEEEEecCC-CCHHHHHhhcC--cCCCCHHHHHHHHHHHHHHHHHhccCC-CCEEcCCCCcccEEEecCCCCcEEEEec
Confidence 9999999996 59999887543 345899999999999999999999521 1499999999999994 5788999999
Q ss_pred cccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCc
Q 042568 816 GIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDV 886 (983)
Q Consensus 816 gla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~ 886 (983)
|+|+..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 206 G~a~~~~~~----------------~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~ 260 (382)
T 2vx3_A 206 GSSCQLGQR----------------IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG 260 (382)
T ss_dssp TTCEETTCC----------------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred cCceecccc----------------cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999866421 1224789999999999999999999999999999999999999864
No 277
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=8.3e-36 Score=327.24 Aligned_cols=264 Identities=20% Similarity=0.313 Sum_probs=192.2
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEec---------
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSK--------- 735 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--------- 735 (983)
.++|...+.||+|+||.||+|+.. +++.||||.+... ....+.+.+|++++++++||||+++++++..
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 82 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT--EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT 82 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc--HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence 457888999999999999999964 7889999998643 2345788999999999999999999998854
Q ss_pred ----CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEE
Q 042568 736 ----PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTAL 811 (983)
Q Consensus 736 ----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~k 811 (983)
....++||||+++|+|.+++... ...+++..++.++.|+++||+|||+++ |+||||||+||+++.++.+|
T Consensus 83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dlkp~Nil~~~~~~~k 156 (303)
T 1zy4_A 83 AVKKKSTLFIQMEYCENGTLYDLIHSE---NLNQQRDEYWRLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNVK 156 (303)
T ss_dssp ---CEEEEEEEEECCCSCBHHHHHHHS---CGGGCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEE
T ss_pred ccccCCceEEEEecCCCCCHHHhhhcc---ccccchHHHHHHHHHHHHHHHHHHhCC---eecccCCHHhEEEcCCCCEE
Confidence 34678999999999999999753 345788999999999999999999996 99999999999999999999
Q ss_pred EccccccccccCCcccccccCCC-CccccccCccccccccccccccCCC-CCCccchhHHHHHHHHHHHhCCCCCCcccC
Q 042568 812 VADFGIAKLVKGIDESVNCANDS-MSFTSTDGLLCGSVGYIAPEYGMGK-RASTHGDVYSFGVLLLEIVTGRRPTDVLFH 889 (983)
Q Consensus 812 l~Dfgla~~~~~~~~~~~~~~~~-~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~k~Dv~SlG~il~elltg~~p~~~~~~ 889 (983)
|+|||.++............... ...........||+.|+|||.+.+. .++.++||||+|+++|||++ ||....
T Consensus 157 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~- 232 (303)
T 1zy4_A 157 IGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM- 232 (303)
T ss_dssp ECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH-
T ss_pred EeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCch-
Confidence 99999998765322110000000 0001122335799999999998864 68999999999999999998 543210
Q ss_pred CCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 890 DGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 890 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
..... ... +..... ..+.. .....+..+.+++.+|++.||++|||+.|++++
T Consensus 233 ---~~~~~------------~~~-~~~~~~-~~~~~---~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 284 (303)
T 1zy4_A 233 ---ERVNI------------LKK-LRSVSI-EFPPD---FDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS 284 (303)
T ss_dssp ---HHHHH------------HHH-HHSTTC-CCCTT---CCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred ---hHHHH------------HHh-cccccc-ccCcc---ccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence 00011 111 111110 11111 112345678899999999999999999999975
No 278
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=8.8e-36 Score=337.52 Aligned_cols=271 Identities=17% Similarity=0.272 Sum_probs=198.7
Q ss_pred CCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHHHhcC-----------CCCccceeeEEe
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQILKRIR-----------HRNLIRIITICS 734 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~~ 734 (983)
++|...+.||+|+||.||+|.. .+++.||||++.... ...+.+.+|++++++++ ||||+++++++.
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK--VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc--cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 5788899999999999999996 468889999986432 23567889999999886 899999999987
Q ss_pred cCC----ceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhcc-CCCCeEeecCCCCCeEeC----
Q 042568 735 KPD----FKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHH-SPIKVVHCDLKPSNILLD---- 805 (983)
Q Consensus 735 ~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~-~~~~ivH~Dikp~NiLl~---- 805 (983)
..+ ..++||||+ +++|.+++.... ...+++..++.++.|++.||+|||++ + |+||||||+|||++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~~i~~qi~~aL~~lH~~~~---ivH~Dikp~NIll~~~~~ 170 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYE--HRGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDS 170 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTT--TSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEEEET
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhh--ccCCcHHHHHHHHHHHHHHHHHHHhcCC---EEecCCChHHeEEeccCC
Confidence 544 779999999 889999887543 34589999999999999999999997 6 99999999999994
Q ss_pred --CCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCC
Q 042568 806 --EDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRP 883 (983)
Q Consensus 806 --~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p 883 (983)
..+.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.|
T Consensus 171 ~~~~~~~kl~Dfg~a~~~~~~----------------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p 234 (373)
T 1q8y_A 171 PENLIQIKIADLGNACWYDEH----------------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFL 234 (373)
T ss_dssp TTTEEEEEECCCTTCEETTBC----------------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCC
T ss_pred CcCcceEEEcccccccccCCC----------------CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCC
Confidence 4458999999999866421 1124689999999999999999999999999999999999999
Q ss_pred CCcccCCC-----CchHHHHHhhCCCCCcHHHHHHH--hhc-CCC----C---Cc--------cccccchHHHHHHHHHH
Q 042568 884 TDVLFHDG-----SSLHEWVKRHYPHRLDPIVEKAI--AKY-APQ----H---MP--------IYYNKVWSDVVLELIEL 940 (983)
Q Consensus 884 ~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~~----~---~~--------~~~~~~~~~~~~~l~~l 940 (983)
|....... ..+...+... ............ ... ... . .. ............++.++
T Consensus 235 f~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 313 (373)
T 1q8y_A 235 FEPDEGHSYTKDDDHIAQIIELL-GELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDF 313 (373)
T ss_dssp C---------CHHHHHHHHHHHH-CSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCCCcccccCChHHHHHHHHHhc-CCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHH
Confidence 97432211 0111111110 000000000000 000 000 0 00 00001124577889999
Q ss_pred HhhhcCCCCCCCCCHHHHHHHH
Q 042568 941 GLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 941 ~~~cl~~dP~~RPs~~evl~~L 962 (983)
+.+|++.||++|||++|++++-
T Consensus 314 i~~~L~~dP~~Rpt~~ell~hp 335 (373)
T 1q8y_A 314 LSPMLQLDPRKRADAGGLVNHP 335 (373)
T ss_dssp HGGGGCSSTTTCBCHHHHHTCG
T ss_pred HHHHhccCccccCCHHHHhhCh
Confidence 9999999999999999999864
No 279
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=1.9e-35 Score=332.40 Aligned_cols=268 Identities=18% Similarity=0.256 Sum_probs=199.3
Q ss_pred hCCCCCCCccccCCcEeEEEEEEC-CC-cEEEEEEeecccCcchhHHHHHHHHHHHhcCCCC------ccceeeEEecCC
Q 042568 666 TGGFCPSSLIGSGRFGHVYKGVLQ-DN-TRIAVKVLDLTTTGEITGSFKRECQILKRIRHRN------LIRIITICSKPD 737 (983)
Q Consensus 666 ~~~f~~~~~iG~G~~g~Vy~~~~~-~~-~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~ 737 (983)
.++|.+.+.||+|+||.||+|... ++ +.||||+++.. ....+.+.+|++++++++|++ ++.+++++...+
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV--GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG 95 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc--ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC
Confidence 367889999999999999999965 34 68999998643 234577889999999997765 899999999999
Q ss_pred ceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe-------------
Q 042568 738 FKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL------------- 804 (983)
Q Consensus 738 ~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl------------- 804 (983)
..++||||+ ++++.+++.... ...+++..++.++.|+++||+|||+++ |+||||||+|||+
T Consensus 96 ~~~lv~e~~-~~~l~~~l~~~~--~~~~~~~~~~~i~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~ 169 (355)
T 2eu9_A 96 HMCIAFELL-GKNTFEFLKENN--FQPYPLPHVRHMAYQLCHALRFLHENQ---LTHTDLKPENILFVNSEFETLYNEHK 169 (355)
T ss_dssp EEEEEEECC-CCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEESCCCEEEEECCC-
T ss_pred eEEEEEecc-CCChHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEecccccccccccc
Confidence 999999999 556666665432 346899999999999999999999996 9999999999999
Q ss_pred ------CCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHH
Q 042568 805 ------DEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIV 878 (983)
Q Consensus 805 ------~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~ell 878 (983)
+.++.+||+|||+++..... .....||+.|+|||.+.+..++.++||||||+++|||+
T Consensus 170 ~~~~~~~~~~~~kl~Dfg~~~~~~~~----------------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~ 233 (355)
T 2eu9_A 170 SCEEKSVKNTSIRVADFGSATFDHEH----------------HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYY 233 (355)
T ss_dssp CCCEEEESCCCEEECCCTTCEETTSC----------------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcEEEeecCcccccccc----------------ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHH
Confidence 56789999999999864321 12246999999999999999999999999999999999
Q ss_pred hCCCCCCcccCCCCchHHHHHhhCCCCCcHHHH----------------------HHHhhcCCCCCccccccchHHHHHH
Q 042568 879 TGRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVE----------------------KAIAKYAPQHMPIYYNKVWSDVVLE 936 (983)
Q Consensus 879 tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (983)
+|+.||..... ......+............. +......... +. ..........+
T Consensus 234 ~g~~pf~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~ 309 (355)
T 2eu9_A 234 RGFTLFQTHEN--REHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPL-KS-YMLQDSLEHVQ 309 (355)
T ss_dssp HSSCSCCCSSH--HHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCG-GG-GCSCCSHHHHH
T ss_pred hCCCCCCCCCH--HHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcc-cc-cccccchhHHH
Confidence 99999864211 11111111111111011100 0000000000 00 00011335678
Q ss_pred HHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 937 LIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 937 l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
+.+++.+|++.||++|||+.|++++
T Consensus 310 l~~li~~~L~~dP~~Rpt~~e~l~h 334 (355)
T 2eu9_A 310 LFDLMRRMLEFDPAQRITLAEALLH 334 (355)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred HHHHHHHHhcCChhhCcCHHHHhcC
Confidence 9999999999999999999999875
No 280
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=327.23 Aligned_cols=247 Identities=24% Similarity=0.319 Sum_probs=191.5
Q ss_pred HHHHhCCCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCc-----chhHHHHHHHHHHHhc----CCCCccceee
Q 042568 662 LIEATGGFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTG-----EITGSFKRECQILKRI----RHRNLIRIIT 731 (983)
Q Consensus 662 l~~~~~~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~-----~~~~~~~~E~~~l~~l----~h~niv~l~~ 731 (983)
.....++|...+.||+|+||.||+|.. .+++.||||+++..... .....+.+|+++++++ +||||+++++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~ 105 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD 105 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence 334567899999999999999999986 46889999999654322 1234567799999999 8999999999
Q ss_pred EEecCCceeEEEec-ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeC-CCCC
Q 042568 732 ICSKPDFKALVLPL-MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLD-EDLT 809 (983)
Q Consensus 732 ~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~-~~~~ 809 (983)
++...+..++|+|| +.+++|.+++... ..+++..++.++.|+++||+|||+.+ |+||||||+||+++ .++.
T Consensus 106 ~~~~~~~~~~v~e~~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~ 178 (312)
T 2iwi_A 106 WFETQEGFMLVLERPLPAQDLFDYITEK----GPLGEGPSRCFFGQVVAAIQHCHSRG---VVHRDIKDENILIDLRRGC 178 (312)
T ss_dssp EC-----CEEEEECCSSEEEHHHHHHHH----CSCCHHHHHHHHHHHHHHHHHHHHHT---EECCCCSGGGEEEETTTTE
T ss_pred EEecCCeEEEEEEecCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChhhEEEeCCCCe
Confidence 99999999999999 7899999998753 35899999999999999999999996 99999999999999 8899
Q ss_pred EEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCC-ccchhHHHHHHHHHHHhCCCCCCccc
Q 042568 810 ALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRAS-THGDVYSFGVLLLEIVTGRRPTDVLF 888 (983)
Q Consensus 810 ~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~k~Dv~SlG~il~elltg~~p~~~~~ 888 (983)
+||+|||+++...... .....||..|+|||++.+..+. .++||||+|+++|||++|+.||...
T Consensus 179 ~kl~dfg~~~~~~~~~---------------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~- 242 (312)
T 2iwi_A 179 AKLIDFGSGALLHDEP---------------YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD- 242 (312)
T ss_dssp EEECCCSSCEECCSSC---------------BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH-
T ss_pred EEEEEcchhhhcccCc---------------ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh-
Confidence 9999999998765321 1224689999999998776654 5899999999999999999998631
Q ss_pred CCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHH
Q 042568 889 HDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEM 962 (983)
Q Consensus 889 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L 962 (983)
..... ... ..+ .....++.+++.+|++.||++|||++|++++-
T Consensus 243 ------~~~~~----------------~~~--~~~-------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~~ 285 (312)
T 2iwi_A 243 ------QEILE----------------AEL--HFP-------AHVSPDCCALIRRCLAPKPSSRPSLEEILLDP 285 (312)
T ss_dssp ------HHHHH----------------TCC--CCC-------TTSCHHHHHHHHHHTCSSTTTSCCHHHHHHST
T ss_pred ------HHHhh----------------hcc--CCc-------ccCCHHHHHHHHHHccCChhhCcCHHHHhcCh
Confidence 01000 000 011 12346788999999999999999999999854
No 281
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-34 Score=330.06 Aligned_cols=336 Identities=22% Similarity=0.234 Sum_probs=212.5
Q ss_pred cccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCccccccc
Q 042568 199 ELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASL 278 (983)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 278 (983)
.++++++|++++|.++...+..|..+++|++|+|++|.++ .++...+..+++|++|+|++|.+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l---------------- 105 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAI---------------- 105 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCC----------------
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCC----------------
Confidence 4566666666666666555555666666666666666665 44444455555555555555554
Q ss_pred CCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCc
Q 042568 279 ANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLE 358 (983)
Q Consensus 279 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 358 (983)
++..|..+..+ ++|++|+|++|.++...+..+.++++|++|++++|++++..|..+..+++|+
T Consensus 106 ----------------~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 106 ----------------RYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp ----------------CCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred ----------------CcCCHHHhcCC-CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 44444444444 2455555555555532223345556666666666666555555555566666
Q ss_pred EEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCcc
Q 042568 359 RVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNK 438 (983)
Q Consensus 359 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 438 (983)
+|++++|.+++. .+..+++|+.|++++|.+++ +...++|+.|++++|.++. +|.. ..++|+.|++++|+
T Consensus 169 ~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~ 237 (390)
T 3o6n_A 169 NLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV-VRGP--VNVELTILKLQHNN 237 (390)
T ss_dssp EEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCE-EECC--CCSSCCEEECCSSC
T ss_pred EEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeee-cccc--ccccccEEECCCCC
Confidence 666666665543 24445566666666666553 2233456666666666653 2322 23567777777777
Q ss_pred ccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccc
Q 042568 439 ISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPV 518 (983)
Q Consensus 439 l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 518 (983)
+++. ..+..+++|+. |++++|.+++..|..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|.
T Consensus 238 l~~~--~~l~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~ 312 (390)
T 3o6n_A 238 LTDT--AWLLNYPGLVE-VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312 (390)
T ss_dssp CCCC--GGGGGCTTCSE-EECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred Cccc--HHHcCCCCccE-EECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCc
Confidence 7643 45666777775 777777777777777777777778888888777 35666677888888888888888 4666
Q ss_pred cccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCCCCCCcccccccccCCcCccCCC
Q 042568 519 SVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISNKGAFSSLTIASFQGNDGLCGEI 588 (983)
Q Consensus 519 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~N~~lc~~~ 588 (983)
.+..+++|+.|++++|++++ +| +..+++|+.|++++|++++.... ..+..+....+.+++..|..+
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred cccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 77788888888888888874 44 67788899999999998875322 233445556677888888765
No 282
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=323.27 Aligned_cols=252 Identities=23% Similarity=0.271 Sum_probs=179.7
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHH-HHHHHHHHHhcCCCCccceeeEEecCCceeEEEe
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGS-FKRECQILKRIRHRNLIRIITICSKPDFKALVLP 744 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~-~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 744 (983)
++|...+.||+|+||.||+|... +++.||||++......+...+ +.++..+++.++||||+++++++...+..++|||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e 104 (318)
T 2dyl_A 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAME 104 (318)
T ss_dssp GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEe
Confidence 46778899999999999999975 689999999976654433333 4445556788899999999999999999999999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhcc-CCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHH-SPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~-~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
|+ ++.+....... ...+++..++.++.|+++||+|||+. + |+||||||+||+++.++.+||+|||+++....
T Consensus 105 ~~-~~~~~~l~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~ 177 (318)
T 2dyl_A 105 LM-GTCAEKLKKRM---QGPIPERILGKMTVAIVKALYYLKEKHG---VIHRDVKPSNILLDERGQIKLCDFGISGRLVD 177 (318)
T ss_dssp CC-SEEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred cc-CCcHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHhhCC---EEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence 99 44554444321 35689999999999999999999985 5 99999999999999999999999999976543
Q ss_pred CcccccccCCCCccccccCccccccccccccccC-----CCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHH
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM-----GKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWV 898 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~ 898 (983)
... .....||+.|+|||.+. +..++.++||||||+++|||++|+.||.....+
T Consensus 178 ~~~--------------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-------- 235 (318)
T 2dyl_A 178 DKA--------------KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTD-------- 235 (318)
T ss_dssp -----------------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSH--------
T ss_pred Ccc--------------ccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCcc--------
Confidence 211 12246899999999984 456889999999999999999999998642111
Q ss_pred HhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 899 KRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
............. ..+. ....+.++.+++.+|++.||++||+++|++++
T Consensus 236 --------~~~~~~~~~~~~~-~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 284 (318)
T 2dyl_A 236 --------FEVLTKVLQEEPP-LLPG-----HMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH 284 (318)
T ss_dssp --------HHHHHHHHHSCCC-CCCS-----SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred --------HHHHHHHhccCCC-CCCc-----cCCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 1111111211111 1110 11244678899999999999999999999975
No 283
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=337.94 Aligned_cols=251 Identities=24% Similarity=0.346 Sum_probs=186.0
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeEEEec
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~ 745 (983)
.+|...++||+|+||+||.....+++.||||++.... ...+.+|+++++++ +||||+++++++......++||||
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~----~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~ 99 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPEC----FSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL 99 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTT----EEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHH----HHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence 4578889999999999766556679999999985432 23467899999999 899999999999999999999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC-----CCCEEEcccccccc
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE-----DLTALVADFGIAKL 820 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~-----~~~~kl~Dfgla~~ 820 (983)
++ |+|.+++.... ....+..++.++.|+++||+|||+.+ |+||||||+||+++. ...+||+|||+|+.
T Consensus 100 ~~-g~L~~~l~~~~---~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~ 172 (432)
T 3p23_A 100 CA-ATLQEYVEQKD---FAHLGLEPITLLQQTTSGLAHLHSLN---IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK 172 (432)
T ss_dssp CS-EEHHHHHHSSS---CCCCSSCHHHHHHHHHHHHHHHHHTT---CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEEC
T ss_pred CC-CCHHHHHHhcC---CCccchhHHHHHHHHHHHHHHHHHCc---CEeCCCCHHHEEEecCCCCCceeEEEecccceee
Confidence 97 59999887543 23444566789999999999999996 999999999999943 34688999999987
Q ss_pred ccCCcccccccCCCCccccccCccccccccccccccC---CCCCCccchhHHHHHHHHHHHh-CCCCCCcccCCCCchHH
Q 042568 821 VKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGM---GKRASTHGDVYSFGVLLLEIVT-GRRPTDVLFHDGSSLHE 896 (983)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~k~Dv~SlG~il~ellt-g~~p~~~~~~~~~~l~~ 896 (983)
....... ........||+.|+|||++. ...++.++||||+||++|||++ |+.||..... ..
T Consensus 173 ~~~~~~~----------~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~---~~-- 237 (432)
T 3p23_A 173 LAVGRHS----------FSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ---RQ-- 237 (432)
T ss_dssp C----------------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT---HH--
T ss_pred ccCCCcc----------eeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH---HH--
Confidence 6533211 01123357999999999987 4567889999999999999999 8999853210 00
Q ss_pred HHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHH
Q 042568 897 WVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~ 961 (983)
............. .........+.+++.+|++.||++|||++|+++|
T Consensus 238 -------------~~~~~~~~~~~~~-----~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~h 284 (432)
T 3p23_A 238 -------------ANILLGACSLDCL-----HPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKH 284 (432)
T ss_dssp -------------HHHHTTCCCCTTS-----CTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred -------------HHHHhccCCcccc-----CccccccHHHHHHHHHHHhCCHhhCCCHHHHHhC
Confidence 0000100000000 0112345668899999999999999999999953
No 284
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=1.3e-35 Score=349.89 Aligned_cols=278 Identities=22% Similarity=0.306 Sum_probs=203.9
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEec------CCce
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSK------PDFK 739 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~~ 739 (983)
++|.+.+.||+|+||.||+|.+. +|+.||||++.........+++.+|++++++++||||+++++++.. .+..
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~ 93 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP 93 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence 68999999999999999999964 6889999998766555567789999999999999999999998755 6677
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCC---EEEcccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLT---ALVADFG 816 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~---~kl~Dfg 816 (983)
++||||+++|+|.+++..... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++.++. +||+|||
T Consensus 94 ~LVmEy~~ggsL~~~L~~~~~-~~~lse~~i~~I~~QLl~aL~yLHs~g---IVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 94 LLAMEYCEGGDLRKYLNQFEN-CCGLKEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp CCEEECCSSCBHHHHHHSSSC-TTCCCSSHHHHHHHHHHHHHHHHHHTT---BCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred EEEEEeCCCCCHHHHHHhccc-CCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEeecCCCceeEEEcccc
Confidence 999999999999999875432 345889999999999999999999996 999999999999997665 9999999
Q ss_pred ccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHH
Q 042568 817 IAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHE 896 (983)
Q Consensus 817 la~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~ 896 (983)
.++....... .....||+.|+|||.+.+..++.++||||+|+++|||++|+.||.... ....
T Consensus 170 ~a~~~~~~~~--------------~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~----~~~~ 231 (676)
T 3qa8_A 170 YAKELDQGEL--------------CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNW----QPVQ 231 (676)
T ss_dssp CCCBTTSCCC--------------CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSC----HHHH
T ss_pred cccccccccc--------------cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCccc----chhh
Confidence 9987643221 123479999999999999999999999999999999999999986421 1111
Q ss_pred HHHhhCCCCCcH-HHHHHHhhc--CCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHH-----HHHHHHHhHh
Q 042568 897 WVKRHYPHRLDP-IVEKAIAKY--APQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLD-----VAHEMGRLKQ 967 (983)
Q Consensus 897 ~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~e-----vl~~L~~~~~ 967 (983)
|........... ......... .....+ .........+..+.+++.+|++.||++|||+.| ..+.++.+.+
T Consensus 232 ~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp-~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~ 309 (676)
T 3qa8_A 232 WHGKVREKSNEHIVVYDDLTGAVKFSSVLP-TPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILS 309 (676)
T ss_dssp SSTTCC------CCSCCCCSSSCCCCSSSC-CSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHC
T ss_pred hhhhhhcccchhhhhhhhhccccccccccC-CchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHh
Confidence 111100000000 000000000 000000 111123446788999999999999999999988 4456665543
No 285
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-34 Score=347.15 Aligned_cols=336 Identities=22% Similarity=0.231 Sum_probs=222.9
Q ss_pred cccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCccccccc
Q 042568 199 ELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASL 278 (983)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 278 (983)
.+.+++.|++++|.+....+..|.++++|++|+|++|.++ .++...+..+++|++|+|++|.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~----------------- 110 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA----------------- 110 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSC-----------------
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCc-----------------
Confidence 4566777777777776665666667777777777777776 3444444555555555555554
Q ss_pred CCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCc
Q 042568 279 ANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLE 358 (983)
Q Consensus 279 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 358 (983)
+++..|..++.+ ++|++|+|++|.+++..+..|+++++|++|+|++|.+++..|..++.+++|+
T Consensus 111 ---------------l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 111 ---------------IRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp ---------------CCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred ---------------CCCCCHHHHcCC-CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 444444444444 3455555555555533333445666666666666666655555566666666
Q ss_pred EEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCcc
Q 042568 359 RVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNK 438 (983)
Q Consensus 359 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 438 (983)
+|+|++|.+++.. ++.+++|+.|++++|.+++ +...++|+.|++++|.++. +|..+ .++|+.|+|++|.
T Consensus 175 ~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~ 243 (597)
T 3oja_B 175 NLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNN 243 (597)
T ss_dssp EEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSC
T ss_pred EEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCC
Confidence 6666666665432 4445566666666666653 2333456666666666653 22222 2567777777777
Q ss_pred ccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccc
Q 042568 439 ISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPV 518 (983)
Q Consensus 439 l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 518 (983)
+++ +..+..+++|+. |+|++|.+++.+|..|..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|.
T Consensus 244 l~~--~~~l~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~ 318 (597)
T 3oja_B 244 LTD--TAWLLNYPGLVE-VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER 318 (597)
T ss_dssp CCC--CGGGGGCTTCSE-EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred CCC--ChhhccCCCCCE-EECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCc
Confidence 775 356677777775 7777777777777778888888888888888874 5777777888999999999888 5777
Q ss_pred cccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccCCCCCCcccccccccCCcCccCCC
Q 042568 519 SVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNISNKGAFSSLTIASFQGNDGLCGEI 588 (983)
Q Consensus 519 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~N~~lc~~~ 588 (983)
.+..+++|+.|+|++|++++. | +..+++|+.|++++|++++.... ..+..+....+.+++..|+.+
T Consensus 319 ~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp GHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred ccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 788888999999999998744 3 66788999999999999876432 234556666788999999875
No 286
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1e-34 Score=321.31 Aligned_cols=280 Identities=19% Similarity=0.256 Sum_probs=181.1
Q ss_pred cccHHhHHHHHHHHHhccCCCccccCCCC---CCCCCCcceeeEEECC--------CCCeEEEEEcccCCcccccccccc
Q 042568 30 DQIIRDRASLVTFMSSIISAPEHALESWN---STDVHVCNWSGVKCNN--------SRNKVVELDLSARSIYGTISPALA 98 (983)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~~l~sw~---~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~l~g~~~~~l~ 98 (983)
.+..+|++||++||+++..||.+.+++|. ....++|.|.|+.|+. ...+|+.|+|+++++. .+|+.++
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 45678999999999999878888889994 3356799999999953 3457888888888887 7788888
Q ss_pred cCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCccc
Q 042568 99 NLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSL 178 (983)
Q Consensus 99 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L 178 (983)
++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..|+++++|++|+|++|++.+.+|..+..
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~------- 172 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS------- 172 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE-------
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh-------
Confidence 8888888888888888 78888888888888888888888 77888888888888888888777777765531
Q ss_pred ceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEcc
Q 042568 179 QYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLS 258 (983)
Q Consensus 179 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 258 (983)
+.+. ..+..+++|++|+|++|+++ .+|..++++++|++|+|++|+++ .+|.. +.
T Consensus 173 -------~~~~-----~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~----------- 226 (328)
T 4fcg_A 173 -------TDAS-----GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IH----------- 226 (328)
T ss_dssp -------EC-C-----CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGG-GG-----------
T ss_pred -------ccch-----hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchh-hc-----------
Confidence 0000 12234555555555555555 45555555555555555555554 23322 12
Q ss_pred ccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEec
Q 042568 259 YNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNL 338 (983)
Q Consensus 259 ~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 338 (983)
.+++ |++|+|++|.+.+.+|..++.+++|++|+|
T Consensus 227 ---------------------~l~~-------------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 227 ---------------------HLPK-------------------------LEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp ---------------------GCTT-------------------------CCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred ---------------------cCCC-------------------------CCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 2223 333333333333344444555555555555
Q ss_pred cccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccc
Q 042568 339 SSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKL 391 (983)
Q Consensus 339 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 391 (983)
++|++.+.+|..+..+++|++|+|++|.+.+.+|..++++++|+.+++..|.+
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 55555555555555555555555555555555555555555555555554444
No 287
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.6e-34 Score=352.06 Aligned_cols=239 Identities=21% Similarity=0.313 Sum_probs=193.9
Q ss_pred CCCCCCCccccCCcEeEEEEEEC--CCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCccceeeEEecCCc-----e
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ--DNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNLIRIITICSKPDF-----K 739 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-----~ 739 (983)
++|.+.+.||+|+||.||+|.+. +++.||||++......+....+.+|++++++++||||+++++++...+. .
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 67889999999999999999975 5889999998765555556789999999999999999999999987665 6
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
++||||+++++|.+++.. .+++..++.|+.||++||+|||+++ |+||||||+|||++.+ .+||+|||+++
T Consensus 160 ~lv~E~~~g~~L~~~~~~------~l~~~~~~~~~~qi~~aL~~lH~~g---iiHrDlkp~NIll~~~-~~kl~DFG~a~ 229 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKGQ------KLPVAEAIAYLLEILPALSYLHSIG---LVYNDLKPENIMLTEE-QLKLIDLGAVS 229 (681)
T ss_dssp EEEEECCCCEECC----C------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSS-CEEECCCTTCE
T ss_pred EEEEEeCCCCcHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHCC---CeecccChHHeEEeCC-cEEEEecccch
Confidence 999999999999887642 5899999999999999999999996 9999999999999986 99999999998
Q ss_pred cccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHH
Q 042568 820 LVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVK 899 (983)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~ 899 (983)
..... ....||++|+|||++.+.. +.++|||||||++|+|++|..||.....+..
T Consensus 230 ~~~~~-----------------~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~------- 284 (681)
T 2pzi_A 230 RINSF-----------------GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDGL------- 284 (681)
T ss_dssp ETTCC-----------------SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSSC-------
T ss_pred hcccC-----------------CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccccc-------
Confidence 65421 2246999999999987654 8899999999999999999988754221110
Q ss_pred hhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCC-HHHHHHHHHHh
Q 042568 900 RHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPS-MLDVAHEMGRL 965 (983)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-~~evl~~L~~~ 965 (983)
+. ..........+.+++.+|++.||++||+ ++++.+.+..+
T Consensus 285 ---~~----------------------~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 326 (681)
T 2pzi_A 285 ---PE----------------------DDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGV 326 (681)
T ss_dssp ---CT----------------------TCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred ---cc----------------------cccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHH
Confidence 00 0001123467889999999999999995 55666666654
No 288
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.5e-33 Score=310.54 Aligned_cols=305 Identities=23% Similarity=0.383 Sum_probs=164.2
Q ss_pred cccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCccccccc
Q 042568 199 ELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASL 278 (983)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 278 (983)
.+++|++|++++|.+.. +| .+..+++|++|++++|+++ .++. +..+++|++|+|++|.+... ..+
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~----------~~~ 106 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI----------SAL 106 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC----------GGG
T ss_pred hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc----------hHH
Confidence 44555555555555542 22 2555555666666666555 3333 45555555555555554321 124
Q ss_pred CCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCc
Q 042568 279 ANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLE 358 (983)
Q Consensus 279 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 358 (983)
..+++|++|++++|++++..+ +..+++|++|++++|.....++ .+..+++|+
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~---------------------------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~ 158 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP---------------------------LANLTKMYSLNLGANHNLSDLS-PLSNMTGLN 158 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG---------------------------GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCC
T ss_pred cCCCcCCEEECcCCcccCchh---------------------------hccCCceeEEECCCCCCccccc-chhhCCCCc
Confidence 444555555555555443211 3333344444444443222221 244444444
Q ss_pred EEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCcc
Q 042568 359 RVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNK 438 (983)
Q Consensus 359 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 438 (983)
+|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|+
T Consensus 159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232 (347)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred EEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc
Confidence 44444444443222 4444445555555554443222 4445555555555555543222 4555555555555555
Q ss_pred ccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccc
Q 042568 439 ISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPV 518 (983)
Q Consensus 439 l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 518 (983)
+++..+ +..+++|+. |++++|.+++. ..+..+++|+.|++++|++++. +.+..+++|+.|++++|++++..|.
T Consensus 233 l~~~~~--~~~l~~L~~-L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 233 ITDLSP--LANLSQLTW-LEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCCCGG--GTTCTTCCE-EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred cCCCcc--hhcCCCCCE-EECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 553322 455555553 55555555542 3456666677777777777643 3467777788888888888777777
Q ss_pred cccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccc
Q 042568 519 SVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFS 561 (983)
Q Consensus 519 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 561 (983)
.+..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77778888888888888876555 777888888888888765
No 289
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=9.8e-34 Score=307.07 Aligned_cols=235 Identities=14% Similarity=0.128 Sum_probs=184.2
Q ss_pred CCCCCCCccccCCcEeEEEEEEC-CCcEEEEEEeecccC--cchhHHHHHHHHHHHhcCCCCccceeeEEecCCceeEEE
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT--GEITGSFKRECQILKRIRHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 743 (983)
++|.+.+.||+|+||.||+|... +++.||||++..... .+..+++.+|++++++++||||+++++++...+..++||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 67999999999999999999975 588999999976543 234578999999999999999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||+++++|.+++.. .....++.+|+.|+++||+|||+++ |+||||||+||+++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~------~~~~~~~~~i~~ql~~aL~~lH~~g---ivH~Dikp~NIll~~~g~~kl~~~~------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADT------SPSPVGAIRAMQSLAAAADAAHRAG---VALSIDHPSRVRVSIDGDVVLAYPA------- 174 (286)
T ss_dssp ECCCEEEHHHHHTT------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEETTSCEEECSCC-------
T ss_pred EecCCCCHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHCC---CccCCCCcccEEEcCCCCEEEEecc-------
Confidence 99999999999853 1355678899999999999999996 9999999999999999999997443
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYP 903 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~ 903 (983)
|++| ++.++|||||||++|||++|+.||........ +.... ....
T Consensus 175 --------------------------~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~-~~~~~-~~~~ 219 (286)
T 3uqc_A 175 --------------------------TMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSG-LAPAE-RDTA 219 (286)
T ss_dssp --------------------------CCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCC-SEECC-BCTT
T ss_pred --------------------------ccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchh-hHHHH-HHhc
Confidence 3332 67899999999999999999999975322110 00000 0000
Q ss_pred CCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHhHhhcC
Q 042568 904 HRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMGRLKQYLS 970 (983)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~~~~~~~~ 970 (983)
... ........+++.++.+++.+||+.||++| |+.|+++.|+++.....
T Consensus 220 ~~~-----------------~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~ 268 (286)
T 3uqc_A 220 GQP-----------------IEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVAD 268 (286)
T ss_dssp SCB-----------------CCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC---
T ss_pred cCC-----------------CChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCC
Confidence 000 00001112345678999999999999999 99999999999875443
No 290
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.1e-32 Score=308.76 Aligned_cols=305 Identities=22% Similarity=0.332 Sum_probs=247.2
Q ss_pred hhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCc
Q 042568 221 LANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPS 300 (983)
Q Consensus 221 l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 300 (983)
+..+++|++|++++|.++ .++. +..+++|++|++++|++ ++..+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i--------------------------------~~~~~- 83 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQI--------------------------------TDISP- 83 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCC--------------------------------CCCGG-
T ss_pred chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCcc--------------------------------ccchh-
Confidence 455666777777776665 3432 44555555555555544 32211
Q ss_pred cccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCC
Q 042568 301 IIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPH 380 (983)
Q Consensus 301 ~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 380 (983)
+..+ ++|++|++++|.+++ + +.+..+++|++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++
T Consensus 84 -~~~l-~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~ 156 (347)
T 4fmz_A 84 -LSNL-VKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTG 156 (347)
T ss_dssp -GTTC-TTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTT
T ss_pred -hhcC-CcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCC
Confidence 3333 356666666666653 2 3578899999999999999855 33 8899999999999997665544 4999999
Q ss_pred CcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceecccc
Q 042568 381 LGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLS 460 (983)
Q Consensus 381 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~ 460 (983)
|+.|++++|++.+..+ +..+++|+.|++++|.+++ ++. +..+++|+.|++++|++++..+ +..+++|+. |+++
T Consensus 157 L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~-L~l~ 229 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNS-LKIG 229 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCE-EECC
T ss_pred CcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCE-EEcc
Confidence 9999999999986554 8899999999999999985 444 8899999999999999996655 888999996 9999
Q ss_pred CCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCc
Q 042568 461 SNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEI 540 (983)
Q Consensus 461 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 540 (983)
+|++++..+ +..+++|+.|++++|.+++ + +.+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..
T Consensus 230 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 230 NNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGG
T ss_pred CCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcC
Confidence 999996554 8999999999999999985 3 5689999999999999999974 45889999999999999999999
Q ss_pred CccccCCCCcceEeccCCccccccCCCCCCcccccccccCCc
Q 042568 541 PQSFQASPTLKQLNFSFNKFSGNISNKGAFSSLTIASFQGND 582 (983)
Q Consensus 541 p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~N~ 582 (983)
|..|..+++|++|++++|++++.+| ...+..+..+++.+|+
T Consensus 304 ~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp HHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred hhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 9999999999999999999999888 6778888899999886
No 291
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=3e-34 Score=319.74 Aligned_cols=244 Identities=16% Similarity=0.214 Sum_probs=187.2
Q ss_pred CCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccC-------cchhHHHHHHHHHHHhcC---------CCCcccee
Q 042568 667 GGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTT-------GEITGSFKRECQILKRIR---------HRNLIRII 730 (983)
Q Consensus 667 ~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~-------~~~~~~~~~E~~~l~~l~---------h~niv~l~ 730 (983)
++|...+.||+|+||.||+|+. +|+.||||+++.... ....+.+.+|++++++++ ||||+++.
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~ 98 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN 98 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence 4677899999999999999998 589999999976532 223478999999999986 66666666
Q ss_pred eEE-----------------ec-------------CCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHH
Q 042568 731 TIC-----------------SK-------------PDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEG 780 (983)
Q Consensus 731 ~~~-----------------~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~a 780 (983)
+.+ .. .+..++||||+++|++.+.+. ...+++..++.++.|+++|
T Consensus 99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~-----~~~~~~~~~~~i~~qi~~a 173 (336)
T 2vuw_A 99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMR-----TKLSSLATAKSILHQLTAS 173 (336)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGT-----TTCCCHHHHHHHHHHHHHH
T ss_pred ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHH-----hcCCCHHHHHHHHHHHHHH
Confidence 553 22 678899999999998777664 2458999999999999999
Q ss_pred HHHHh-ccCCCCeEeecCCCCCeEeCCCC--------------------CEEEccccccccccCCcccccccCCCCcccc
Q 042568 781 VAYLH-HHSPIKVVHCDLKPSNILLDEDL--------------------TALVADFGIAKLVKGIDESVNCANDSMSFTS 839 (983)
Q Consensus 781 L~~LH-~~~~~~ivH~Dikp~NiLl~~~~--------------------~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~ 839 (983)
|+||| +.+ |+||||||+|||++.++ .+||+|||+|+....
T Consensus 174 L~~lH~~~~---ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~---------------- 234 (336)
T 2vuw_A 174 LAVAEASLR---FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD---------------- 234 (336)
T ss_dssp HHHHHHHHC---CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET----------------
T ss_pred HHHHHHhCC---EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC----------------
Confidence 99999 886 99999999999999887 899999999986542
Q ss_pred ccCccccccccccccccCCCCCCccchhHHHHHH-HHHHHhCCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcC
Q 042568 840 TDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVL-LLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYA 918 (983)
Q Consensus 840 ~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~i-l~elltg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 918 (983)
...+||+.|+|||++.+.. +.++||||+|++ .+++++|..||... .|.. ...+.......
T Consensus 235 --~~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~--------~~~~--------~~~~~~~~~~~ 295 (336)
T 2vuw_A 235 --GIVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV--------LWLH--------YLTDKMLKQMT 295 (336)
T ss_dssp --TEEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH--------HHHH--------HHHHHHHHTCC
T ss_pred --CcEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcch--------hhhh--------HHHHhhhhhhc
Confidence 1247999999999998876 899999998777 78899999997421 0100 11112221111
Q ss_pred CCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHH-HH
Q 042568 919 PQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVA-HE 961 (983)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl-~~ 961 (983)
.. .......+...+.++.+++.+|++.| |++|++ +|
T Consensus 296 ~~--~~~~~~~~~~~s~~~~dli~~~L~~d-----sa~e~l~~H 332 (336)
T 2vuw_A 296 FK--TKCNTPAMKQIKRKIQEFHRTMLNFS-----SATDLLCQH 332 (336)
T ss_dssp CS--SCCCSHHHHHHHHHHHHHHHHGGGSS-----SHHHHHHHC
T ss_pred cC--cccchhhhhhcCHHHHHHHHHHhccC-----CHHHHHhcC
Confidence 11 11112235678889999999999976 899988 54
No 292
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=1.3e-33 Score=309.05 Aligned_cols=233 Identities=20% Similarity=0.309 Sum_probs=179.3
Q ss_pred CCCCCC-CccccCCcEeEEEEEE-CCCcEEEEEEeecccCcchhHHHHHHHHHH-HhcCCCCccceeeEEec----CCce
Q 042568 667 GGFCPS-SLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTGEITGSFKRECQIL-KRIRHRNLIRIITICSK----PDFK 739 (983)
Q Consensus 667 ~~f~~~-~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~~~ 739 (983)
++|... ++||+|+||.||+|.. .+++.||||++.. ...+.+|++++ +..+||||+++++++.. ....
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 90 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence 456665 7799999999999996 4688999999852 35678899988 55699999999999876 6678
Q ss_pred eEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC---CCCEEEcccc
Q 042568 740 ALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE---DLTALVADFG 816 (983)
Q Consensus 740 ~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~---~~~~kl~Dfg 816 (983)
++||||+++|+|.+++.... ...+++..++.++.|+++||+|||+.+ |+||||||+||+++. ++.+||+|||
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~kl~Dfg 165 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDRG--DQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFG 165 (299)
T ss_dssp EEEECCCCSCBHHHHHHHCT--TCCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCT
T ss_pred EEEEeecCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEecCCCCCcEEEeccc
Confidence 99999999999999997543 346999999999999999999999996 999999999999998 7899999999
Q ss_pred ccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCCCCcccCCCCchHH
Q 042568 817 IAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHE 896 (983)
Q Consensus 817 la~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~ 896 (983)
++.... +..++.++||||+||++|||++|+.||........
T Consensus 166 ~a~~~~-----------------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~---- 206 (299)
T 3m2w_A 166 FAKETT-----------------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI---- 206 (299)
T ss_dssp TCEECT-----------------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC----------
T ss_pred cccccc-----------------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh----
Confidence 986432 12356789999999999999999999864221100
Q ss_pred HHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 042568 897 WVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLCTQYNPSTRPSMLDVAHEMG 963 (983)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~evl~~L~ 963 (983)
... .... .... ........+..++.++.+++.+|++.||++|||++|++++-.
T Consensus 207 -~~~-~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp~ 259 (299)
T 3m2w_A 207 -SPG-MKTR-----------IRMG-QYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPW 259 (299)
T ss_dssp --CC-SCCS-----------SCTT-CCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred -hHH-HHHH-----------Hhhc-cccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcChh
Confidence 000 0000 0000 000001112235678999999999999999999999998654
No 293
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=1.9e-34 Score=329.82 Aligned_cols=243 Identities=16% Similarity=0.121 Sum_probs=178.8
Q ss_pred CCCCCCccccCCcEeEEEEEE-CCCcEEEEEEeecccCc--chhHHHHHHHHHHHhcCC-CCccce---------eeE--
Q 042568 668 GFCPSSLIGSGRFGHVYKGVL-QDNTRIAVKVLDLTTTG--EITGSFKRECQILKRIRH-RNLIRI---------ITI-- 732 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~-~~~~~vAvK~~~~~~~~--~~~~~~~~E~~~l~~l~h-~niv~l---------~~~-- 732 (983)
.|...++||+|+||.||+|.+ .+|+.||||++...... ...+.+.+|+.+++.++| +|.... .+.
T Consensus 79 ~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
T 3dzo_A 79 TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVK 158 (413)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEE
T ss_pred eEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcc
Confidence 466678999999999999995 47899999998743322 236789999999999987 322111 111
Q ss_pred ----------Eec-----CCceeEEEecccCcccccccccc---cCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEe
Q 042568 733 ----------CSK-----PDFKALVLPLMSNGSLENHLYPS---HGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVH 794 (983)
Q Consensus 733 ----------~~~-----~~~~~lv~e~~~~gsL~~~l~~~---~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH 794 (983)
+.. ....+++|+++ +++|.+++... ......+++..++.++.|+++||+|||+++ |+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---iiH 234 (413)
T 3dzo_A 159 DPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG---LVH 234 (413)
T ss_dssp CCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT---EEC
T ss_pred cCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccc
Confidence 111 12346666665 57898887421 112345788899999999999999999996 999
Q ss_pred ecCCCCCeEeCCCCCEEEccccccccccCCcccccccCCCCccccccCcccccccccccccc----------CCCCCCcc
Q 042568 795 CDLKPSNILLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYG----------MGKRASTH 864 (983)
Q Consensus 795 ~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~k 864 (983)
|||||+|||++.++.+||+|||+++..... .....| +.|+|||++ .+..++.+
T Consensus 235 rDiKp~NILl~~~~~~kL~DFG~a~~~~~~----------------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~ 297 (413)
T 3dzo_A 235 TYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----------------AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFA 297 (413)
T ss_dssp SCCCGGGEEECTTCCEEECCGGGCEETTEE----------------ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHH
T ss_pred CCcccceEEEecCCeEEEEeccceeecCCc----------------cccCCC-CceeCchhhhccccccccccCcCCCch
Confidence 999999999999999999999998865421 122467 999999998 56678899
Q ss_pred chhHHHHHHHHHHHhCCCCCCcccCCCCchHHHHHhhCCCCCcHHHHHHHhhcCCCCCccccccchHHHHHHHHHHHhhh
Q 042568 865 GDVYSFGVLLLEIVTGRRPTDVLFHDGSSLHEWVKRHYPHRLDPIVEKAIAKYAPQHMPIYYNKVWSDVVLELIELGLLC 944 (983)
Q Consensus 865 ~Dv~SlG~il~elltg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c 944 (983)
+|||||||++|||++|+.||........ ... .... +...+.++.+++.+|
T Consensus 298 ~DvwSlGvil~elltg~~Pf~~~~~~~~-------------~~~--------~~~~---------~~~~~~~~~~li~~~ 347 (413)
T 3dzo_A 298 FDTWTLGLAIYWIWCADLPNTDDAALGG-------------SEW--------IFRS---------CKNIPQPVRALLEGF 347 (413)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCTTGGGSC-------------SGG--------GGSS---------CCCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCCCCCCcchhhh-------------HHH--------HHhh---------cccCCHHHHHHHHHH
Confidence 9999999999999999999864321100 000 0000 012346789999999
Q ss_pred cCCCCCCCCCHHHHHHH
Q 042568 945 TQYNPSTRPSMLDVAHE 961 (983)
Q Consensus 945 l~~dP~~RPs~~evl~~ 961 (983)
|+.||++||++.|++++
T Consensus 348 l~~dP~~Rpt~~~~l~~ 364 (413)
T 3dzo_A 348 LRYPKEDRLLPLQAMET 364 (413)
T ss_dssp TCSSGGGSCCHHHHTTS
T ss_pred ccCChhhCcCHHHHHhC
Confidence 99999999999888754
No 294
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=9.5e-32 Score=298.87 Aligned_cols=268 Identities=24% Similarity=0.294 Sum_probs=200.8
Q ss_pred CCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEE
Q 042568 282 SNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVY 361 (983)
Q Consensus 282 ~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 361 (983)
+++++|++++|++++..|..+..+ ++|++|+|++|.+++..|..+.++++|++|++++|+++ .+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGL-QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCC-CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 355666666666665555566665 36777777777777666777777788888888888877 4555443 6788888
Q ss_pred eeCCcccCCCCCCCCCCCCCcEEEccCcccc--CcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccc
Q 042568 362 LSNNSLSGEIPSAFGDIPHLGLLDLSKNKLS--GSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKI 439 (983)
Q Consensus 362 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 439 (983)
+++|.+.+..+..|..+++|+.|++++|+++ +..|..+..+ +|+.|++++|.+++ +|..+. ++|+.|++++|++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 8888888666667788888888888888885 3667777777 88888888888874 555443 6788888888888
Q ss_pred cCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCccccccccc
Q 042568 440 SGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVS 519 (983)
Q Consensus 440 ~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 519 (983)
++..+..+..+++|+. |++++|++++..|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..
T Consensus 206 ~~~~~~~l~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYR-LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCCTTSSTTCTTCSC-CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CccCHHHhcCCCCCCE-EECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 8777778888888885 888888888777778888888888888888888 77888888888888888888888776666
Q ss_pred ccCC------CCccEEecCCcccc--CCcCccccCCCCcceEeccCCc
Q 042568 520 VGQL------PYLKQFDVSSNRLF--GEIPQSFQASPTLKQLNFSFNK 559 (983)
Q Consensus 520 ~~~l------~~L~~L~ls~N~l~--~~~p~~~~~l~~L~~l~l~~N~ 559 (983)
|... ..|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6543 56888888888876 5667788888888888888874
No 295
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=4.2e-36 Score=350.48 Aligned_cols=357 Identities=19% Similarity=0.189 Sum_probs=221.3
Q ss_pred ccceeecccccccCCCCCcccccccccceeecccCcccc----ccchhhhccCCcceecccccccccccchhhhcCCC--
Q 042568 177 SLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVG----QVPQALANSSKLEWLDLESNMFSGELPSEIISKMP-- 250 (983)
Q Consensus 177 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-- 250 (983)
+|++|+|++|+++.......+..+++|++|+|++|++++ .++..+..+++|++|+|++|.+++..+..+...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 344444444444322222224466777777777777764 34666777788888888888876544445555555
Q ss_pred --CccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCcccccc----ccCeeEEEccCcccccc--
Q 042568 251 --QLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDL----STNLVQIHLDCNLIYGK-- 322 (983)
Q Consensus 251 --~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l----~~~L~~L~L~~N~l~~~-- 322 (983)
+|++|+|++|++.... ...++..+..+++|++|++++|.+++..+..+... .++|++|++++|.+++.
T Consensus 84 ~~~L~~L~L~~n~i~~~~----~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAG----CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCCCCEEECTTSCCBGGG----HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred CCceeEEEccCCCCCHHH----HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 6888888888765321 22345667777888888888888775444433321 23577788888777753
Q ss_pred --CCCCCCCCCcccEEeccccccCCCCCccccc-----CCCCcEEEeeCCcccCC----CCCCCCCCCCCcEEEccCccc
Q 042568 323 --IPPHISNLVNLTLLNLSSNLLNGTIPHELCL-----MSKLERVYLSNNSLSGE----IPSAFGDIPHLGLLDLSKNKL 391 (983)
Q Consensus 323 --~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l 391 (983)
++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|+.|+|++|++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 2445556677888888888776544443332 55788888888877753 355566677788888888877
Q ss_pred cCcC-----cccccCcccchhhcccCccCCCC----CcccccCCCCCCEEEccCccccCcCCccccC-----CCccceec
Q 042568 392 SGSI-----PDSFANLSQLRRLLLYGNHLSGT----IPSSLGKCVNLEILDLSHNKISGIIPSDVAG-----LRSLKLYL 457 (983)
Q Consensus 392 ~~~~-----~~~~~~l~~L~~L~l~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~~L 457 (983)
++.. +..+..+++|+.|++++|.+++. ++..+..+++|+.|++++|++++..+..+.. .++|+. |
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~-L 318 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES-L 318 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE-E
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee-e
Confidence 6432 22233567777777777777643 4566666777778888777776443333322 245664 6
Q ss_pred cccCCCCCCC----CccccccccccccccccccccccCCCccccc-----ccccceEEeCCCcccc----cccccccCCC
Q 042568 458 NLSSNHLDGP----LPLELSKMDMVLAIDLSFNNLSGSIPPQLGS-----CIALESLNLSGNSLEG----LLPVSVGQLP 524 (983)
Q Consensus 458 ~l~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~ 524 (983)
++++|.+++. ++..+..+++|+.|||++|++++..+..+.. .++|+.|+|++|++++ .+|..+..++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 7777766654 3445555566666666666666544444432 4466666666666664 4555666666
Q ss_pred CccEEecCCccccC
Q 042568 525 YLKQFDVSSNRLFG 538 (983)
Q Consensus 525 ~L~~L~ls~N~l~~ 538 (983)
+|+.|++++|++++
T Consensus 399 ~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 399 SLRELDLSNNCLGD 412 (461)
T ss_dssp CCCEEECCSSSCCH
T ss_pred CccEEECCCCCCCH
Confidence 66666666666653
No 296
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=7.1e-32 Score=299.88 Aligned_cols=285 Identities=22% Similarity=0.313 Sum_probs=173.9
Q ss_pred EEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCc
Q 042568 80 VELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNN 159 (983)
Q Consensus 80 ~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N 159 (983)
+.++++++++. .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|+|++..|..|+++++|++|+|++|
T Consensus 36 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 34455555665 5665553 67888888888888666777888888888888888888777888888888888888888
Q ss_pred ccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccc--cccchhhhccCCcceeccccccc
Q 042568 160 KLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLV--GQVPQALANSSKLEWLDLESNMF 237 (983)
Q Consensus 160 ~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l 237 (983)
+++ .+|..++ ++|++|++++|.++ .+|...+..+++|++|++++|.++ +..|..+..+ +|++|++++|++
T Consensus 113 ~l~-~l~~~~~-----~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 113 HLV-EIPPNLP-----SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCC-SCCSSCC-----TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred cCC-ccCcccc-----ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 887 5665442 44555555555544 233333344444444444444442 1333333333 344444444333
Q ss_pred ccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCc
Q 042568 238 SGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCN 317 (983)
Q Consensus 238 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N 317 (983)
+ + +|..+. ++|++|++++|
T Consensus 185 ~---------------------------------------------------------~-l~~~~~---~~L~~L~l~~n 203 (332)
T 2ft3_A 185 T---------------------------------------------------------G-IPKDLP---ETLNELHLDHN 203 (332)
T ss_dssp S---------------------------------------------------------S-CCSSSC---SSCSCCBCCSS
T ss_pred C---------------------------------------------------------c-cCcccc---CCCCEEECCCC
Confidence 3 2 222211 34556666666
Q ss_pred cccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcc
Q 042568 318 LIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPD 397 (983)
Q Consensus 318 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 397 (983)
.+++..|..+..+++|++|+|++|++++..+..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|+|++..+.
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence 666555666777777777777777777666667777777777777777777 5666677777777777777777766555
Q ss_pred cccCc------ccchhhcccCccCC--CCCcccccCCCCCCEEEccCc
Q 042568 398 SFANL------SQLRRLLLYGNHLS--GTIPSSLGKCVNLEILDLSHN 437 (983)
Q Consensus 398 ~~~~l------~~L~~L~l~~N~l~--~~~p~~l~~l~~L~~L~Ls~N 437 (983)
.|... .+|+.|++++|.+. +..|..|..+++|+.|++++|
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred HccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 55442 34555555555554 344455555555555555555
No 297
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2.3e-31 Score=295.64 Aligned_cols=246 Identities=22% Similarity=0.307 Sum_probs=154.4
Q ss_pred cccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCccccc
Q 042568 84 LSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVG 163 (983)
Q Consensus 84 l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~ 163 (983)
++++++. .+|..+. +.|++|+|++|.+++..+..|+++++|++|+|++|++++..|..|+++++|++|+|++|+++
T Consensus 38 ~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~- 113 (330)
T 1xku_A 38 CSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113 (330)
T ss_dssp CTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-
T ss_pred ecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-
Confidence 3344444 4554443 57889999999998776778899999999999999998777888999999999999999887
Q ss_pred ccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceeccccccccc-ccc
Q 042568 164 EIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSG-ELP 242 (983)
Q Consensus 164 ~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~~ 242 (983)
.+|..++ ++|++|++++|++++..+..|.++++|++|++++|.++. .+.
T Consensus 114 ~l~~~~~------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 114 ELPEKMP------------------------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp BCCSSCC------------------------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred ccChhhc------------------------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 5665432 455666666666665666666666777777777766642 122
Q ss_pred hhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCcccccc
Q 042568 243 SEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGK 322 (983)
Q Consensus 243 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~ 322 (983)
...+..+++|++|++++|.+.. +|..+. ++|++|++++|.+++.
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~---------------------------------l~~~~~---~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITT---------------------------------IPQGLP---PSLTELHLDGNKITKV 207 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCS---------------------------------CCSSCC---TTCSEEECTTSCCCEE
T ss_pred hhhccCCCCcCEEECCCCcccc---------------------------------CCcccc---ccCCEEECCCCcCCcc
Confidence 2334455555555555554432 111111 2455555555555544
Q ss_pred CCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCccccc
Q 042568 323 IPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFA 400 (983)
Q Consensus 323 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 400 (983)
.|..+..+++|++|+|++|++++..+..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|+|++..+..|+
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 4555555566666666666666555555566666666666666665 4555566666666666666666655444443
No 298
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.9e-31 Score=292.92 Aligned_cols=268 Identities=22% Similarity=0.272 Sum_probs=175.4
Q ss_pred CccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEe
Q 042568 283 NFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYL 362 (983)
Q Consensus 283 ~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 362 (983)
++++|++++|++++..+..+..+ ++|++|+|++|.+++..|..+..+++|++|++++|+++ .+|..+. ++|++|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCCEeChhhhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 34445555555554444445444 35666666666666555666666666777777666666 3444433 56677777
Q ss_pred eCCcccCCCCCCCCCCCCCcEEEccCccccC--cCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCcccc
Q 042568 363 SNNSLSGEIPSAFGDIPHLGLLDLSKNKLSG--SIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKIS 440 (983)
Q Consensus 363 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 440 (983)
++|.+.+..+..|..+++|+.|++++|++.. ..+..|.++++|+.|++++|.++ .+|..+. ++|+.|++++|+++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence 7777766666666667777777777776642 55666667777777777777776 3454433 66777777777777
Q ss_pred CcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccc
Q 042568 441 GIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSV 520 (983)
Q Consensus 441 ~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 520 (983)
+..|..+..+++|+. |++++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus 206 ~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 206 KVDAASLKGLNNLAK-LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp EECTGGGTTCTTCCE-EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred ccCHHHhcCCCCCCE-EECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 666777777777775 777777777666667777777777777777777 677777777777777777777776666555
Q ss_pred cCC------CCccEEecCCccccC--CcCccccCCCCcceEeccCCc
Q 042568 521 GQL------PYLKQFDVSSNRLFG--EIPQSFQASPTLKQLNFSFNK 559 (983)
Q Consensus 521 ~~l------~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~l~l~~N~ 559 (983)
... ..|+.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 432 567777788877752 445677777777778777774
No 299
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=9.6e-36 Score=347.44 Aligned_cols=395 Identities=21% Similarity=0.180 Sum_probs=196.0
Q ss_pred CCCcEEeCcCCcCCCCCcc-ccCCCCCCCEEeccCccCCC----CchhhhcccccccEEeccCcccccccCCcccccCCC
Q 042568 101 SSLIVLDLSKNFFQGHIPA-ELGSLIRLKQLSLSWNSLQG----KIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSS 175 (983)
Q Consensus 101 ~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l 175 (983)
++|++|||++|+++..... .+..+++|++|+|++|.+++ .++..+..+++|++|+|++|++++..+..++ ..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~--~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL--QGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH--HTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH--HHH
Confidence 4566777777776643322 25667777777777777763 3456666777777777777777643332222 011
Q ss_pred cccceeecccccccCCCCCcccccccccceeecccCcccc----ccchhhhccCCcceecccccccccccchhh----hc
Q 042568 176 TSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVG----QVPQALANSSKLEWLDLESNMFSGELPSEI----IS 247 (983)
Q Consensus 176 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~----~~ 247 (983)
+. ..++|++|+|++|+++. .+|..+..+++|++|+|++|.+++..+..+ ..
T Consensus 81 ~~---------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 139 (461)
T 1z7x_W 81 QT---------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139 (461)
T ss_dssp CS---------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred hh---------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence 10 00135555555555542 335555666666666666666543222211 22
Q ss_pred CCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccc----cccCeeEEEccCcccccc-
Q 042568 248 KMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGD----LSTNLVQIHLDCNLIYGK- 322 (983)
Q Consensus 248 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~----l~~~L~~L~L~~N~l~~~- 322 (983)
..++|++|+|++|++.... ...++..+..+++|++|++++|.+++..+..+.. ..++|++|++++|.+++.
T Consensus 140 ~~~~L~~L~L~~n~l~~~~----~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAAS----CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp TTCCCCEEECTTSCCBGGG----HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred CCCcceEEECCCCCCCHHH----HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 2345555665555543311 1122333444556666666666655433222221 012444444444444431
Q ss_pred ---CCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCc----C
Q 042568 323 ---IPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGS----I 395 (983)
Q Consensus 323 ---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~ 395 (983)
++..+..+++|++|++++|.+++.....+. +..+..+++|+.|+|++|++++. +
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 233333444455555555544322110000 11122334444444444444322 2
Q ss_pred cccccCcccchhhcccCccCCCCCccccc-----CCCCCCEEEccCccccCc----CCccccCCCccceeccccCCCCCC
Q 042568 396 PDSFANLSQLRRLLLYGNHLSGTIPSSLG-----KCVNLEILDLSHNKISGI----IPSDVAGLRSLKLYLNLSSNHLDG 466 (983)
Q Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~~L~l~~N~l~~ 466 (983)
+..+..+++|+.|++++|.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|+. |++++|.+++
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~-L~Ls~n~i~~ 355 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE-LQISNNRLED 355 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE-EECCSSBCHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE-EEccCCcccc
Confidence 33333344444444444444322222221 123555555555555543 2344444555554 6666665554
Q ss_pred CCcccccc-----cccccccccccccccc----CCCcccccccccceEEeCCCccccccccccc-----CCCCccEEecC
Q 042568 467 PLPLELSK-----MDMVLAIDLSFNNLSG----SIPPQLGSCIALESLNLSGNSLEGLLPVSVG-----QLPYLKQFDVS 532 (983)
Q Consensus 467 ~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~ls 532 (983)
..+..+.. .++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++.-...+. ...+|+.|++.
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~ 435 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 435 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeec
Confidence 43333332 4577777888887775 6677777788888888888888754221111 23457777777
Q ss_pred CccccCCcCc
Q 042568 533 SNRLFGEIPQ 542 (983)
Q Consensus 533 ~N~l~~~~p~ 542 (983)
+|.+....+.
T Consensus 436 ~~~~~~~~~~ 445 (461)
T 1z7x_W 436 DIYWSEEMED 445 (461)
T ss_dssp TCCCCHHHHH
T ss_pred ccccCHHHHH
Confidence 7666544443
No 300
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=8.7e-33 Score=333.21 Aligned_cols=437 Identities=14% Similarity=0.114 Sum_probs=251.0
Q ss_pred CcceeeEEECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcC---CCCCccccC------------CCCCCC
Q 042568 64 VCNWSGVKCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFF---QGHIPAELG------------SLIRLK 128 (983)
Q Consensus 64 ~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l---~~~~p~~~~------------~l~~L~ 128 (983)
|++|.++.+.. . ..+.+.. .....++..+..+++|++|+|+++.. .+.+|..++ .+++|+
T Consensus 41 ck~W~~~~~~~-~---~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 115 (592)
T 3ogk_B 41 CRRWFKIDSET-R---EHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115 (592)
T ss_dssp CHHHHHHHHHH-C---CEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred hHHHHHhhhcc-c---cEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCC
Confidence 45799985432 1 1222222 22334455678899999999988532 135555444 789999
Q ss_pred EEeccCccCCCCchhhhccc--ccccEEeccCcccccccCCccc-ccCCCcccceeecccccccCCCCC---cccccccc
Q 042568 129 QLSLSWNSLQGKIPSQLGSL--HQLEYLDLGNNKLVGEIPIPIF-CSNSSTSLQYIDLSNNSLTGEIPL---KNECELRN 202 (983)
Q Consensus 129 ~L~Ls~n~l~~~~p~~~~~L--~~L~~L~Ls~N~l~~~~p~~~~-~~~~l~~L~~L~Ls~N~l~~~ip~---~~~~~l~~ 202 (983)
+|+|++|.+++..+..++.+ ++|++|+|++|.-. .+..+. ....+++|++|+|++|.+++.-.. .....+++
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 99999999998888888775 55999999998721 111111 113578999999999988754211 13346789
Q ss_pred cceeecccCccc----cccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCccccccc
Q 042568 203 LRFLLLWSNRLV----GQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASL 278 (983)
Q Consensus 203 L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 278 (983)
|++|++++|.++ +.++..+.++++|++|+|++|.+.+ +| ..+..+++|++|+++.+... ......+..+
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l 266 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNED-----IGMPEKYMNL 266 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCC-----TTCTTSSSCC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccc-----cchHHHHHHh
Confidence 999999999987 3455667788999999999999884 55 56788899999999863221 1112334556
Q ss_pred CCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCC-CCCCCCCcccEEeccccccCCCCCcccccCCCC
Q 042568 279 ANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIP-PHISNLVNLTLLNLSSNLLNGTIPHELCLMSKL 357 (983)
Q Consensus 279 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 357 (983)
..+++|+.|+++++.. +.+|..+..+ ++|++|+|++|.+++... ..+..+++|++|+++++...+.++.....+++|
T Consensus 267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGP-NEMPILFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCTTCCEEEETTCCT-TTGGGGGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred hccccccccCccccch-hHHHHHHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 6777888888777533 2444444444 357777777666554322 224556666666666322222223333455666
Q ss_pred cEEEeeC-----------CcccCCC-CCCCCCCCCCcEEEccCccccCcCcccccC-cccchhhccc----CccCCCC--
Q 042568 358 ERVYLSN-----------NSLSGEI-PSAFGDIPHLGLLDLSKNKLSGSIPDSFAN-LSQLRRLLLY----GNHLSGT-- 418 (983)
Q Consensus 358 ~~L~L~~-----------N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~l~----~N~l~~~-- 418 (983)
++|+|++ |.+++.. +..+..+++|+.|+++.|++++..+..++. +++|+.|+++ .|.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 6666662 3443221 111223555666666555555544444443 4555555553 4444432
Q ss_pred ---CcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccc-ccccccccccccccccc-CCC
Q 042568 419 ---IPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELS-KMDMVLAIDLSFNNLSG-SIP 493 (983)
Q Consensus 419 ---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p 493 (983)
++..+..+++|+.|++++|. +.+++..+..+. .+++|+.|+|++|++++ .++
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~-----------------------~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQ-----------------------GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCG-----------------------GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCC-----------------------CCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 12223445555555554321 112222222222 13445555555555543 223
Q ss_pred cccccccccceEEeCCCccccc-ccccccCCCCccEEecCCccccCC
Q 042568 494 PQLGSCIALESLNLSGNSLEGL-LPVSVGQLPYLKQFDVSSNRLFGE 539 (983)
Q Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~ 539 (983)
..+..+++|+.|+|++|++++. ++..+..+++|+.|+|++|++++.
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 3334555566666666655433 222334455666666666665543
No 301
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.4e-29 Score=277.91 Aligned_cols=287 Identities=21% Similarity=0.266 Sum_probs=189.6
Q ss_pred CCCcceeeEEECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCC--
Q 042568 62 VHVCNWSGVKCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQG-- 139 (983)
Q Consensus 62 ~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-- 139 (983)
.+.|.|.+|.|+.. +++ .+|..+. ++|++|+|++|.++...+..|+++++|++|+|++|.++.
T Consensus 4 ~C~C~~~~l~c~~~------------~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 68 (306)
T 2z66_A 4 RCSCSGTEIRCNSK------------GLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68 (306)
T ss_dssp TCEEETTEEECCSS------------CCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred CCeeCCCEEEcCCC------------Ccc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence 34588999999753 233 4454332 689999999999994444457999999999999999983
Q ss_pred CchhhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccch
Q 042568 140 KIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQ 219 (983)
Q Consensus 140 ~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~ 219 (983)
..|..+..+++|++|+|++|.++ .+|..+. .+++|++|++++|.+++..+...+..+++|++|++++|++.+..|.
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 144 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSCSEE-EEEEEEE---TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT
T ss_pred CcccccccccccCEEECCCCccc-cChhhcC---CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh
Confidence 34778888999999999999998 5665543 5667777777777666443334455566666666666666655555
Q ss_pred hhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCC
Q 042568 220 ALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIP 299 (983)
Q Consensus 220 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 299 (983)
.+.++++|++|+|++|.+++...... +..++
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------------------~~~l~----------------- 175 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQENFLPDI--------------------------------FTELR----------------- 175 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSC--------------------------------CTTCT-----------------
T ss_pred hcccCcCCCEEECCCCccccccchhH--------------------------------HhhCc-----------------
Confidence 56556666666666665543111111 22222
Q ss_pred ccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCC
Q 042568 300 SIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIP 379 (983)
Q Consensus 300 ~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 379 (983)
+|++|++++|.+++..|..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+.+..|..+..++
T Consensus 176 --------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 176 --------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp --------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred --------CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 344455555555555566677777888888888888876666777888888888888888888888888874
Q ss_pred -CCcEEEccCccccCcCc--ccccCcccchhhcccCccCCCCCccccc
Q 042568 380 -HLGLLDLSKNKLSGSIP--DSFANLSQLRRLLLYGNHLSGTIPSSLG 424 (983)
Q Consensus 380 -~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~p~~l~ 424 (983)
+|+.|+|++|++++..+ .....+...+.+.+..+.+....|..+.
T Consensus 248 ~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 248 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp TTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred ccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 78888888888875422 1112233444444555555544444443
No 302
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-31 Score=313.13 Aligned_cols=218 Identities=23% Similarity=0.257 Sum_probs=133.7
Q ss_pred CCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhh
Q 042568 329 NLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRL 408 (983)
Q Consensus 329 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 408 (983)
.+++|++|+|++|.+++..|..++.+++|++|+|++|.+++..| |+.+++|+.|+|++|+|++..+ .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34466666666666666555666666666666666666665544 6666666666666666654322 2566666
Q ss_pred cccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccc-cccccccccccccc
Q 042568 409 LLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELS-KMDMVLAIDLSFNN 487 (983)
Q Consensus 409 ~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~ 487 (983)
++++|.+++..+. .+++|+.|+|++|++++..|..+..+++|+. |+|++|.+++.+|..+. .+++|+.|+|++|.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY-LDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEE-EECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCE-EECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 6666666644332 2455666666666666666666666666664 66666666666665554 56666666666666
Q ss_pred cccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccc
Q 042568 488 LSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFS 561 (983)
Q Consensus 488 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 561 (983)
|++. |. +..+++|+.|+|++|+|++.+| .+..+++|+.|+|++|+|+ .+|..+..+++|+.|++++|++.
T Consensus 181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 181 IYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred cccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 6644 22 2346666666666666665333 3666666666777766666 35666666666666666666665
No 303
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.5e-30 Score=285.70 Aligned_cols=280 Identities=19% Similarity=0.195 Sum_probs=210.8
Q ss_pred CCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEE
Q 042568 281 SSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERV 360 (983)
Q Consensus 281 l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 360 (983)
++.....++++|+++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|++++..|..+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 344445677777776 3455433 467888888888876666677888888888888888887777778888888888
Q ss_pred EeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCc-ccccCcccchhhcccCc-cCCCCCcccccCCCCCCEEEccCcc
Q 042568 361 YLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIP-DSFANLSQLRRLLLYGN-HLSGTIPSSLGKCVNLEILDLSHNK 438 (983)
Q Consensus 361 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~ 438 (983)
+|++|.+++..+..|+.+++|++|+|++|++++..+ ..|.++++|+.|++++| .+++..+..|..+++|+.|++++|+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 888888886555557788888888888888875444 46778888888888887 4665556677888888888888888
Q ss_pred ccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccc---cccccceEEeCCCcccc-
Q 042568 439 ISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLG---SCIALESLNLSGNSLEG- 514 (983)
Q Consensus 439 l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~- 514 (983)
+++..|..+..+++|+. |++++|+++...+..+..+++|+.|+|++|++++..+..+. ....++.++|++|.+++
T Consensus 186 l~~~~~~~l~~l~~L~~-L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSH-LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp CCEECTTTTTTCSEEEE-EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred cCccCHHHHhccccCCe-ecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 88777888888888885 88888888644333455678888888888888866555443 35667888888888876
Q ss_pred ---cccccccCCCCccEEecCCccccCCcCcc-ccCCCCcceEeccCCccccccCC
Q 042568 515 ---LLPVSVGQLPYLKQFDVSSNRLFGEIPQS-FQASPTLKQLNFSFNKFSGNISN 566 (983)
Q Consensus 515 ---~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~l~l~~N~l~~~~~~ 566 (983)
.+|..+..+++|+.|++++|+++ .+|.. |.++++|++|++++|++++.+|.
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 46778889999999999999998 66665 58999999999999999987764
No 304
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-29 Score=278.77 Aligned_cols=251 Identities=26% Similarity=0.278 Sum_probs=147.9
Q ss_pred cEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCC--CCcccccCCCCcEEEe
Q 042568 285 QELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGT--IPHELCLMSKLERVYL 362 (983)
Q Consensus 285 ~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L 362 (983)
+.+++++++++ .+|..+ +++|++|+|++|.++...+..|.++++|++|+|++|+++.. .|..+..+++|++|+|
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46777777776 344432 24566777777776643333456666677777776666522 2444555566666666
Q ss_pred eCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCc
Q 042568 363 SNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGI 442 (983)
Q Consensus 363 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 442 (983)
++|.+. .+|..+..+++|+.|++++|++++..+ +..+..+++|++|++++|++++.
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCcc
Confidence 666655 234445555555555555555554332 02344444555555555555544
Q ss_pred CCccccCCCccceeccccCCCCCC-CCccccccccccccccccccccccCCCcccccccccceEEeCCCccccccccccc
Q 042568 443 IPSDVAGLRSLKLYLNLSSNHLDG-PLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVG 521 (983)
Q Consensus 443 ~p~~~~~l~~L~~~L~l~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 521 (983)
.+..+..+++|+. |++++|.+++ .+|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+.
T Consensus 142 ~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 142 FNGIFNGLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp STTTTTTCTTCCE-EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred chhhcccCcCCCE-EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 4444555555553 5555555544 3455555666666666666666655566666666677777777777665555666
Q ss_pred CCCCccEEecCCccccCCcCccccCCC-CcceEeccCCcccccc
Q 042568 522 QLPYLKQFDVSSNRLFGEIPQSFQASP-TLKQLNFSFNKFSGNI 564 (983)
Q Consensus 522 ~l~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~l~l~~N~l~~~~ 564 (983)
.+++|+.|++++|++++..|..+..++ +|++|++++|++++..
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 677777777777777766666666664 6777777777776543
No 305
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=2e-29 Score=299.52 Aligned_cols=293 Identities=25% Similarity=0.308 Sum_probs=175.2
Q ss_pred cccCCCCCCCCCCcceeeEEEC------CCCCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCC
Q 042568 52 HALESWNSTDVHVCNWSGVKCN------NSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLI 125 (983)
Q Consensus 52 ~~l~sw~~~~~~~c~w~gv~c~------~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (983)
...++|.. +.+||.|+|..|. .....++.|++++++++ .+|..+. ++|++|+|++|.|+ .+|. .++
T Consensus 10 ~~w~~W~~-~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~ 81 (622)
T 3g06_A 10 AVWSAWRR-AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPP 81 (622)
T ss_dssp CHHHHHHH-TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCT
T ss_pred HHHHHHHh-cCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCC
Confidence 44567765 3568999764331 11224677777777776 6666554 67777777777777 4555 467
Q ss_pred CCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccce
Q 042568 126 RLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRF 205 (983)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~ 205 (983)
+|++|+|++|+|+ .+|. .+++|++|+|++|+++ .+|. .+++|+.|++++|++++ +|. .+++|++
T Consensus 82 ~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~------~l~~L~~L~L~~N~l~~-lp~----~l~~L~~ 145 (622)
T 3g06_A 82 ELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA------LPSGLCKLWIFGNQLTS-LPV----LPPGLQE 145 (622)
T ss_dssp TCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC------CCTTCCEEECCSSCCSC-CCC----CCTTCCE
T ss_pred CCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC------CCCCcCEEECCCCCCCc-CCC----CCCCCCE
Confidence 7777777777777 4555 5677777777777776 3443 24566667777666663 442 2356666
Q ss_pred eecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCcc
Q 042568 206 LLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQ 285 (983)
Q Consensus 206 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~ 285 (983)
|+|++|++++ +|. .+.+|+.|++++|+++ .+| ..+++|+.|+|++|.
T Consensus 146 L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~------------------------ 192 (622)
T 3g06_A 146 LSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQ------------------------ 192 (622)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSC------------------------
T ss_pred EECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCC------------------------
Confidence 6666666653 232 2345566666666665 344 234455555555554
Q ss_pred EEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCC
Q 042568 286 ELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNN 365 (983)
Q Consensus 286 ~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 365 (983)
+++ +|.. .++|+.|++++|.++ .+|.. +++|++|+|++|++++ +| ..+++|+.|+|++|
T Consensus 193 --------l~~-l~~~----~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 193 --------LAS-LPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGN 251 (622)
T ss_dssp --------CSC-CCCC----CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS
T ss_pred --------CCC-CCCc----cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCC
Confidence 442 2221 134555555555555 23332 3556666666666664 34 34466667777777
Q ss_pred cccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCC
Q 042568 366 SLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCV 427 (983)
Q Consensus 366 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~ 427 (983)
.|+. +|. .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|.+++..|..+..++
T Consensus 252 ~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 252 RLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 6663 343 4566777777777776 5566677777777777777777766666555443
No 306
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1e-28 Score=273.16 Aligned_cols=235 Identities=20% Similarity=0.282 Sum_probs=176.9
Q ss_pred cCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEc
Q 042568 307 TNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDL 386 (983)
Q Consensus 307 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 386 (983)
..++.|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++.+++|+.|+|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 35677777777776 66666777777777777777777 66666777777777777777776 55666777777777777
Q ss_pred cCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCC
Q 042568 387 SKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDG 466 (983)
Q Consensus 387 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~ 466 (983)
++|++.+.+|..+... ..+..|..+++|++|+|++|+++ .+|..+..+++|+. |++++|++++
T Consensus 158 ~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~-L~L~~N~l~~ 220 (328)
T 4fcg_A 158 RACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS-LKIRNSPLSA 220 (328)
T ss_dssp EEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE-EEEESSCCCC
T ss_pred CCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE-EEccCCCCCc
Confidence 7766666666654431 11123455777888888888777 67777777777775 8888888874
Q ss_pred CCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccC
Q 042568 467 PLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQA 546 (983)
Q Consensus 467 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~ 546 (983)
+|..+..+++|+.|+|++|++.+.+|..++.+++|+.|+|++|++.+.+|..+..+++|+.|+|++|++.+.+|..+.+
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred -CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 5556888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCcceEeccCCcccc
Q 042568 547 SPTLKQLNFSFNKFSG 562 (983)
Q Consensus 547 l~~L~~l~l~~N~l~~ 562 (983)
+++|+.+++..|.+..
T Consensus 300 L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 300 LPANCIILVPPHLQAQ 315 (328)
T ss_dssp SCTTCEEECCGGGSCC
T ss_pred ccCceEEeCCHHHHHH
Confidence 8888888888776643
No 307
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.7e-28 Score=281.89 Aligned_cols=250 Identities=21% Similarity=0.208 Sum_probs=146.6
Q ss_pred ccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEee
Q 042568 284 FQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLS 363 (983)
Q Consensus 284 L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 363 (983)
...++.++++++ .+|..+ ++++++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 455666666665 344332 2455666666666665555556666666666666666655555555555555555555
Q ss_pred CCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcC
Q 042568 364 NNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGII 443 (983)
Q Consensus 364 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 443 (983)
+|.+++..+..|..+++|+.|+|++|+++...+..|.++++|+.|++++| |.+....
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~-----------------------~~l~~i~ 188 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL-----------------------KKLEYIS 188 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC-----------------------TTCCEEC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC-----------------------CCccccC
Confidence 55555555555555555555555555555444444555555555555542 2222222
Q ss_pred CccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCC
Q 042568 444 PSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQL 523 (983)
Q Consensus 444 p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 523 (983)
+..+.++++|+. |+|++|++++. | .+..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+
T Consensus 189 ~~~~~~l~~L~~-L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 189 EGAFEGLFNLKY-LNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp TTTTTTCTTCCE-EECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhccCCCCCCE-EECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 223444444443 44444444432 2 24555666666677777766666677777777777777777777667777777
Q ss_pred CCccEEecCCccccCCcCccccCCCCcceEeccCCccccc
Q 042568 524 PYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGN 563 (983)
Q Consensus 524 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 563 (983)
++|+.|+|++|+|++..+..|..+++|+.|++++|++.+.
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 7777777777777765556667777777777777776543
No 308
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.6e-28 Score=266.62 Aligned_cols=224 Identities=27% Similarity=0.277 Sum_probs=124.4
Q ss_pred cEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeC
Q 042568 285 QELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSN 364 (983)
Q Consensus 285 ~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 364 (983)
+++++++++++. +|..+ +++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 455666666652 33322 24566666666666655555666666666666666666655566666666666666666
Q ss_pred Cc-ccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcC
Q 042568 365 NS-LSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGII 443 (983)
Q Consensus 365 N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 443 (983)
|. +....|..|..+++|++|+|++|++++..|..|.++++|+.|++++|.+++..+..|..+++|+.|+|++|++++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 65 55555566666666666666666666555555666666666666666665444444555556666666666555444
Q ss_pred CccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCccc
Q 042568 444 PSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLE 513 (983)
Q Consensus 444 p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 513 (983)
+..+..+++|+. |++++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++.
T Consensus 170 ~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDR-LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCE-EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCE-EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 444555555553 555555554444444444444444444444444333333444444444444444443
No 309
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.5e-28 Score=280.18 Aligned_cols=248 Identities=23% Similarity=0.231 Sum_probs=158.1
Q ss_pred ccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEee
Q 042568 284 FQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLS 363 (983)
Q Consensus 284 L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 363 (983)
...++.++++++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456777777666 3454332 456667777777766666666666777777777776665555666666666666666
Q ss_pred CCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCcc-CCCCCcccccCCCCCCEEEccCccccCc
Q 042568 364 NNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNH-LSGTIPSSLGKCVNLEILDLSHNKISGI 442 (983)
Q Consensus 364 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 442 (983)
+|.+++..+..|..+++|+.|+|++|+++...+..|.++++|+.|++++|+ +....+..|..+++|++|+|++|+++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS--
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc--
Confidence 666665555566666666666666666665555555555555555555532 22222224445555555555555544
Q ss_pred CCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccC
Q 042568 443 IPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQ 522 (983)
Q Consensus 443 ~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 522 (983)
.+| .+..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..
T Consensus 199 ------------------------~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 199 ------------------------EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp ------------------------SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred ------------------------ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 122 2455556666777777777666777777777777777777777777777777
Q ss_pred CCCccEEecCCccccCCcCccccCCCCcceEeccCCcccc
Q 042568 523 LPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSG 562 (983)
Q Consensus 523 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 562 (983)
+++|+.|+|++|+|++..+..|..+++|+.|+|++|++.+
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 7777777777777776666667777777777777777654
No 310
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.3e-28 Score=265.37 Aligned_cols=227 Identities=21% Similarity=0.206 Sum_probs=131.4
Q ss_pred eEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCc
Q 042568 310 VQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKN 389 (983)
Q Consensus 310 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 389 (983)
+.++++++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45677777766 445433 356777777777776655556666666777777776666666666666666666666666
Q ss_pred c-ccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCC
Q 042568 390 K-LSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPL 468 (983)
Q Consensus 390 ~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~ 468 (983)
+ +....|..|..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+. |++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH-LFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE-EECCCCcccccC
Confidence 5 55555556666666666666666666555555566666666666666665444444555555553 555555554333
Q ss_pred ccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCC
Q 042568 469 PLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASP 548 (983)
Q Consensus 469 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~ 548 (983)
+. .|..+++|+.|+|++|++++..|..+..+++|+.|++++|++++..|..+..++
T Consensus 170 ~~------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 170 ER------------------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TT------------------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HH------------------------HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 33 444455555555555555554455555555555555555555544444455555
Q ss_pred CcceEeccCCcccccc
Q 042568 549 TLKQLNFSFNKFSGNI 564 (983)
Q Consensus 549 ~L~~l~l~~N~l~~~~ 564 (983)
+|++|++++|++.+..
T Consensus 226 ~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TCCEEECCSSCEECSG
T ss_pred ccCEEeccCCCccCCC
Confidence 5555555555555443
No 311
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=276.02 Aligned_cols=273 Identities=21% Similarity=0.234 Sum_probs=237.9
Q ss_pred eEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCc
Q 042568 310 VQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKN 389 (983)
Q Consensus 310 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 389 (983)
...++++|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 34 ~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 45889999998 6777665 58999999999999777778999999999999999999988999999999999999999
Q ss_pred cccCcCcccccCcccchhhcccCccCCCCCc-ccccCCCCCCEEEccCc-cccCcCCccccCCCccceeccccCCCCCCC
Q 042568 390 KLSGSIPDSFANLSQLRRLLLYGNHLSGTIP-SSLGKCVNLEILDLSHN-KISGIIPSDVAGLRSLKLYLNLSSNHLDGP 467 (983)
Q Consensus 390 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p-~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~ 467 (983)
++++..+..|+++++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|+. |++++|++++.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~-L~l~~n~l~~~ 189 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE-LEIDASDLQSY 189 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE-EEEEETTCCEE
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE-EECCCCCcCcc
Confidence 9997767779999999999999999995444 47899999999999999 577777888999999996 99999999999
Q ss_pred CccccccccccccccccccccccCCCcc-cccccccceEEeCCCccccccccccc---CCCCccEEecCCccccC----C
Q 042568 468 LPLELSKMDMVLAIDLSFNNLSGSIPPQ-LGSCIALESLNLSGNSLEGLLPVSVG---QLPYLKQFDVSSNRLFG----E 539 (983)
Q Consensus 468 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~ls~N~l~~----~ 539 (983)
.|..+..+++|+.|++++|++. .+|.. +..+++|+.|++++|++++..+..+. ....++.+++++|.+++ .
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 9999999999999999999997 45554 45689999999999999987665543 35678888999888876 4
Q ss_pred cCccccCCCCcceEeccCCccccccCCC-CCCcccccccccCCcCccCC
Q 042568 540 IPQSFQASPTLKQLNFSFNKFSGNISNK-GAFSSLTIASFQGNDGLCGE 587 (983)
Q Consensus 540 ~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~~N~~lc~~ 587 (983)
+|..+..+++|++|++++|+++..++.. ..+..+..+.+.+|++.|..
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 7889999999999999999999766553 67889999999999998863
No 312
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4e-31 Score=318.70 Aligned_cols=413 Identities=14% Similarity=0.090 Sum_probs=254.2
Q ss_pred CccccCCCCCCCEEeccCccC---CCCchhhhc------------ccccccEEeccCcccccccCCcccccCCCc-ccce
Q 042568 117 IPAELGSLIRLKQLSLSWNSL---QGKIPSQLG------------SLHQLEYLDLGNNKLVGEIPIPIFCSNSST-SLQY 180 (983)
Q Consensus 117 ~p~~~~~l~~L~~L~Ls~n~l---~~~~p~~~~------------~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~-~L~~ 180 (983)
.+..+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+.. ..+ +|++
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~--~~~~~L~~ 142 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAK--ARADDLET 142 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHH--HHGGGCCE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHH--hccccCcE
Confidence 344456667777777766432 123332222 5566666666666665433333220 012 2555
Q ss_pred eecccccccCCCCCcccccccccceeecccCcccc-ccchhhhccCCcceeccccccccccc---chhhhcCCCCccEEE
Q 042568 181 IDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVG-QVPQALANSSKLEWLDLESNMFSGEL---PSEIISKMPQLQFLY 256 (983)
Q Consensus 181 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~ 256 (983)
|+|++|.- ++. .++....++++|++|+|++|.+++.- -..++..+++|++|+
T Consensus 143 L~L~~~~~------------------------~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~ 198 (592)
T 3ogk_B 143 LKLDKCSG------------------------FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198 (592)
T ss_dssp EEEESCEE------------------------EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEE
T ss_pred EECcCCCC------------------------cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEE
Confidence 55544431 110 11222234455555555555544321 112334455555555
Q ss_pred ccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCcccc---ccCCCCCCCCCcc
Q 042568 257 LSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIY---GKIPPHISNLVNL 333 (983)
Q Consensus 257 Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~---~~~p~~l~~l~~L 333 (983)
|++|.+.... ...+...+.++++|++|++++|.+.+ +|..+..+ ++|++|+++.+... +..+..+..+++|
T Consensus 199 L~~n~~~~~~----~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 199 FYMTEFAKIS----PKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA-ANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CTTCCCSSCC----HHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC-TTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred eeccCCCccC----HHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh-hHHHhhcccccccccchHHHHHHhhccccc
Confidence 5555543111 11222333445666666666666654 44445444 45666666643222 2344566777888
Q ss_pred cEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCC-CCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccC
Q 042568 334 TLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIP-SAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYG 412 (983)
Q Consensus 334 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 412 (983)
+.|+++++.. +.+|..+..+++|++|+|++|.+++... ..+..+++|+.|+|+++...+.++..+..+++|+.|++++
T Consensus 273 ~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 273 CRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp CEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 8888887543 3567777778888888888888664333 2357788888888883332223344445678888888883
Q ss_pred -----------ccCCCC-CcccccCCCCCCEEEccCccccCcCCccccC-CCccceecccc----CCCCCCC-----Ccc
Q 042568 413 -----------NHLSGT-IPSSLGKCVNLEILDLSHNKISGIIPSDVAG-LRSLKLYLNLS----SNHLDGP-----LPL 470 (983)
Q Consensus 413 -----------N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~~L~l~----~N~l~~~-----~p~ 470 (983)
|.+++. ++..+..+++|++|+++.|++++..+..+.. +++|+. |+++ .|.+++. ++.
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~-L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD-FRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCE-EEEEECSCCSCCSSCCCHHHHHH
T ss_pred CccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcE-EEEeecCCCccccCchHHHHHHH
Confidence 555532 2223455889999999888888776666655 778885 8885 7778764 444
Q ss_pred cccccccccccccccc--ccccCCCccccc-ccccceEEeCCCcccc-cccccccCCCCccEEecCCccccCC-cCcccc
Q 042568 471 ELSKMDMVLAIDLSFN--NLSGSIPPQLGS-CIALESLNLSGNSLEG-LLPVSVGQLPYLKQFDVSSNRLFGE-IPQSFQ 545 (983)
Q Consensus 471 ~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~ 545 (983)
.+.++++|+.|+|++| .+++..+..++. +++|+.|+|++|++++ .++..+..+++|+.|++++|++++. ++..+.
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 5778999999999854 477666666654 8899999999999987 3556668899999999999998755 455566
Q ss_pred CCCCcceEeccCCccccc
Q 042568 546 ASPTLKQLNFSFNKFSGN 563 (983)
Q Consensus 546 ~l~~L~~l~l~~N~l~~~ 563 (983)
.+++|++|++++|+++..
T Consensus 511 ~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HCSSCCEEEEESCBCCTT
T ss_pred hcCccCeeECcCCcCCHH
Confidence 899999999999998754
No 313
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.1e-29 Score=275.64 Aligned_cols=255 Identities=23% Similarity=0.253 Sum_probs=161.9
Q ss_pred cccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccC-CCCchhhhc-------ccccccEEeccCcccccccCCc
Q 042568 97 LANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSL-QGKIPSQLG-------SLHQLEYLDLGNNKLVGEIPIP 168 (983)
Q Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~-------~L~~L~~L~Ls~N~l~~~~p~~ 168 (983)
++..++|++|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++|++|+|++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34455666666666666 555555443 66666666666 334555554 5666666666666666666655
Q ss_pred ccccCCCcccceeecccccccCCCCCcccccc-----cccceeecccCccccccchhhhccCCcceeccccccccccc--
Q 042568 169 IFCSNSSTSLQYIDLSNNSLTGEIPLKNECEL-----RNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGEL-- 241 (983)
Q Consensus 169 ~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-- 241 (983)
++ ...+++|++|+|++|++++. | ..+..+ ++|++|+|++|++++..|..|+++++|++|+|++|++.+.+
T Consensus 115 ~~-~~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 115 LL-EATGPDLNILNLRNVSWATR-D-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp SS-SCCSCCCSEEEEESCBCSSS-S-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HH-HhcCCCccEEEccCCCCcch-h-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 42 23566666666666666654 3 333344 67777777777777666677777777777777777765442
Q ss_pred chh-hhcCCCCccEEEccccccccCCCCCCCcccc-cccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccc
Q 042568 242 PSE-IISKMPQLQFLYLSYNDFVSHDGNTNLEPFF-ASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLI 319 (983)
Q Consensus 242 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l 319 (983)
+.. .+..+++|++|+|++|++... ...+ ..+..+++|++|++++|++++..|.......++|++|+|++|.+
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETP------SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCH------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred HHHHHhccCCCCCEEECCCCcCcch------HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 222 236677777777777766421 1111 12345677777777777777766433333235788888888888
Q ss_pred cccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccC
Q 042568 320 YGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSG 369 (983)
Q Consensus 320 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 369 (983)
+ .+|..+. ++|++|+|++|++++. |. +..+++|++|+|++|.+++
T Consensus 266 ~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 266 K-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp S-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred C-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7 6677666 7788888888888755 55 7778888888888888774
No 314
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.9e-27 Score=275.92 Aligned_cols=248 Identities=25% Similarity=0.270 Sum_probs=186.0
Q ss_pred CccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCC
Q 042568 251 QLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNL 330 (983)
Q Consensus 251 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l 330 (983)
..+.++.+++.++.++ ..+. +++++|+|++|++++..|..+..+ ++|++|+|++|.+++..|..|..+
T Consensus 55 ~~~~v~c~~~~l~~iP---------~~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l 122 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVP---------QGIP--SNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNGL 122 (452)
T ss_dssp SSCEEECCSSCCSSCC---------SCCC--TTCSEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCcEEEECCCCcCccC---------CCCC--CCccEEECcCCcCceECHHHcCCC-CCCCEEECCCCccCCcChhhccCc
Confidence 4578888888776543 2222 689999999999999889989888 589999999999999989999999
Q ss_pred CcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCc-cccCcCcccccCcccchhhc
Q 042568 331 VNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKN-KLSGSIPDSFANLSQLRRLL 409 (983)
Q Consensus 331 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 409 (983)
++|++|+|++|++++..+..+..+++|++|+|++|.+....+..|..+++|+.|+|++| .+....+..|.++++|+.|+
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 99999999999999877788999999999999999999888889999999999999994 55544445677788888888
Q ss_pred ccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccc
Q 042568 410 LYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLS 489 (983)
Q Consensus 410 l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 489 (983)
|++|++++ +| .+..+++|+.|+|++|++++..|..|.++++|+. |++++|++++..|..|..+++|+.|+|++|+|+
T Consensus 203 L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 203 LGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK-LWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp CTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE-EECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCE-EEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 88888774 34 3666777777777777777666666666666664 666666665555555555555555555555555
Q ss_pred cCCCcccccccccceEEeCCCccc
Q 042568 490 GSIPPQLGSCIALESLNLSGNSLE 513 (983)
Q Consensus 490 ~~~p~~~~~l~~L~~L~Ls~N~l~ 513 (983)
+..+..|..+++|+.|+|++|++.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccChHHhccccCCCEEEccCCCcC
Confidence 433444444455555555555443
No 315
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.8e-29 Score=277.67 Aligned_cols=223 Identities=25% Similarity=0.285 Sum_probs=148.9
Q ss_pred ccEEeccccccC-CCCCcccc-------cCCCCcEEEeeCCcccCCCCCCC--CCCCCCcEEEccCccccCcCcccccCc
Q 042568 333 LTLLNLSSNLLN-GTIPHELC-------LMSKLERVYLSNNSLSGEIPSAF--GDIPHLGLLDLSKNKLSGSIPDSFANL 402 (983)
Q Consensus 333 L~~L~Ls~N~l~-~~~p~~l~-------~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l 402 (983)
|+.|+|++|+++ +.+|..+. .+++|++|+|++|.+++.+|..+ +.+++|+.|+|++|++++. |..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 455555555552 23343333 45666666666666666566554 6666666666666666655 5555555
Q ss_pred -----ccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCc--CCccc--cCCCccceeccccCCCCCC--CCc-c
Q 042568 403 -----SQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGI--IPSDV--AGLRSLKLYLNLSSNHLDG--PLP-L 470 (983)
Q Consensus 403 -----~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~~L~l~~N~l~~--~~p-~ 470 (983)
++|++|++++|++++..|..|+.+++|++|+|++|++.+. .|..+ ..+++|+. |++++|++++ .++ .
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV-LALRNAGMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCE-EECTTSCCCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCE-EECCCCcCcchHHHHHH
Confidence 6666666666666666656666677777777777766544 22233 56666764 7777777763 122 2
Q ss_pred ccccccccccccccccccccCCC-cccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCC
Q 042568 471 ELSKMDMVLAIDLSFNNLSGSIP-PQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPT 549 (983)
Q Consensus 471 ~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 549 (983)
.+..+++|+.|||++|++++.+| ..+..+++|+.|+|++|+|+ .+|..+. ++|+.|+|++|+|++. |. +..+++
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 34566788888888888887665 45566788888888888888 6777666 7888888888888855 66 888888
Q ss_pred cceEeccCCcccc
Q 042568 550 LKQLNFSFNKFSG 562 (983)
Q Consensus 550 L~~l~l~~N~l~~ 562 (983)
|++|++++|++++
T Consensus 298 L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 298 VGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECTTCTTTC
T ss_pred CCEEeccCCCCCC
Confidence 9999999988875
No 316
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=274.18 Aligned_cols=248 Identities=27% Similarity=0.300 Sum_probs=202.7
Q ss_pred CccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCC
Q 042568 251 QLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNL 330 (983)
Q Consensus 251 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l 330 (983)
..+.++.+++.+..++ ..+. ++++.|+|++|++++..+..+..+ ++|++|+|++|.+++..+..|.++
T Consensus 44 ~~~~v~c~~~~l~~iP---------~~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l 111 (440)
T 3zyj_A 44 QFSKVICVRKNLREVP---------DGIS--TNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGL 111 (440)
T ss_dssp TSCEEECCSCCCSSCC---------SCCC--TTCSEEECCSCCCCEECTTTTSSC-SSCCEEECCSSCCCEECGGGGTTC
T ss_pred CCCEEEeCCCCcCcCC---------CCCC--CCCcEEEccCCcCCeeCHHHhhCC-CCCCEEECCCCcCCccChhhccCC
Confidence 4678888888776543 2332 689999999999998888888888 589999999999998888899999
Q ss_pred CcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCc-cccCcCcccccCcccchhhc
Q 042568 331 VNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKN-KLSGSIPDSFANLSQLRRLL 409 (983)
Q Consensus 331 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 409 (983)
++|++|+|++|+++...+..+..+++|++|+|++|.+....+..|..+++|+.|+|++| .+....+..|.++++|+.|+
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 99999999999999777778999999999999999999888889999999999999995 55545556899999999999
Q ss_pred ccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccc
Q 042568 410 LYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLS 489 (983)
Q Consensus 410 l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 489 (983)
|++|.++ .+| .+..+++|+.|+|++|++++..|..|.++++|+. |+|++|++++..|..|.++++|+.|||++|+|+
T Consensus 192 L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 192 LAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK-LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp CTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE-EECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred CCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCE-EECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 9999998 566 4788889999999999998877888888887775 777777777666666666666666666666666
Q ss_pred cCCCcccccccccceEEeCCCccc
Q 042568 490 GSIPPQLGSCIALESLNLSGNSLE 513 (983)
Q Consensus 490 ~~~p~~~~~l~~L~~L~Ls~N~l~ 513 (983)
+..+..|..+++|+.|+|++|++.
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhHhccccCCCEEEcCCCCcc
Confidence 554555556666666666666654
No 317
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.3e-28 Score=269.36 Aligned_cols=270 Identities=24% Similarity=0.250 Sum_probs=180.8
Q ss_pred CeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEec
Q 042568 77 NKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDL 156 (983)
Q Consensus 77 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~L 156 (983)
.+....+++.+.+...+...+..+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..| ++.+++|++|+|
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 345666666666655555555666778888888888877666778888888888888888875444 777888888888
Q ss_pred cCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccc
Q 042568 157 GNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNM 236 (983)
Q Consensus 157 s~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 236 (983)
++|++++ +| ..++|++|++++|.+++..+. .+++|++|++++|++++..|..++.+++|++|+|++|+
T Consensus 88 s~n~l~~-l~-------~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 88 NNNYVQE-LL-------VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp CSSEEEE-EE-------ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred cCCcccc-cc-------CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 8887763 22 236677777777777643321 35666777777777766666666666666666666666
Q ss_pred cccccchhhhcCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccC
Q 042568 237 FSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDC 316 (983)
Q Consensus 237 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~ 316 (983)
+++..+..+...+++|++|+|++|.+
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l------------------------------------------------------ 181 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFI------------------------------------------------------ 181 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCC------------------------------------------------------
T ss_pred CCcccHHHHhhccCcCCEEECCCCcC------------------------------------------------------
Confidence 66433333333344444444444332
Q ss_pred ccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCcccc-CcC
Q 042568 317 NLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLS-GSI 395 (983)
Q Consensus 317 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~ 395 (983)
++. | ....+++|++|+|++|++++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|++. +.+
T Consensus 182 ---~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 182 ---YDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp ---CEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred ---ccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCH
Confidence 211 1 11235667777777777774 3445777788888888888887 46777888899999999999998 778
Q ss_pred cccccCcccchhhcccC-ccCCCCCcc
Q 042568 396 PDSFANLSQLRRLLLYG-NHLSGTIPS 421 (983)
Q Consensus 396 ~~~~~~l~~L~~L~l~~-N~l~~~~p~ 421 (983)
|..+..+++|+.|++++ +.++|..|.
T Consensus 255 ~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhccccceEEECCCchhccCCchh
Confidence 88888999999999984 456555443
No 318
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.6e-26 Score=274.57 Aligned_cols=269 Identities=25% Similarity=0.326 Sum_probs=148.1
Q ss_pred CCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCcccce
Q 042568 101 SSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQY 180 (983)
Q Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~ 180 (983)
..+++|++++|.++ .+|..+. ++|++|+|++|+|+ .+|. .+++|++|+|++|+++ .+|. .+++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~------~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV------LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC------CCTTCCE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC------CCCCCCE
Confidence 46889999999998 7887776 78999999999988 6666 5788888888888887 4554 3456666
Q ss_pred eecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEcccc
Q 042568 181 IDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYN 260 (983)
Q Consensus 181 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 260 (983)
|+|++|.+++ +|. .+++| ++|++++|+++ .+|.. +++|++|+|++|
T Consensus 106 L~Ls~N~l~~-l~~----~l~~L------------------------~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N 151 (622)
T 3g06_A 106 LSIFSNPLTH-LPA----LPSGL------------------------CKLWIFGNQLT-SLPVL----PPGLQELSVSDN 151 (622)
T ss_dssp EEECSCCCCC-CCC----CCTTC------------------------CEEECCSSCCS-CCCCC----CTTCCEEECCSS
T ss_pred EECcCCcCCC-CCC----CCCCc------------------------CEEECCCCCCC-cCCCC----CCCCCEEECcCC
Confidence 6666666553 222 23444 44444444444 23321 234444444444
Q ss_pred ccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccc
Q 042568 261 DFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSS 340 (983)
Q Consensus 261 ~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 340 (983)
++..++. ..++|+.|++++|++++ +| ...++|+.|++++|.+++ +|.. +++|+.|++++
T Consensus 152 ~l~~l~~------------~~~~L~~L~L~~N~l~~-l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~ 210 (622)
T 3g06_A 152 QLASLPA------------LPSELCKLWAYNNQLTS-LP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYN 210 (622)
T ss_dssp CCSCCCC------------CCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred cCCCcCC------------ccCCCCEEECCCCCCCC-Cc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcC
Confidence 4332110 11334444444444442 22 112345555555555542 2322 23444555555
Q ss_pred cccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCc
Q 042568 341 NLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIP 420 (983)
Q Consensus 341 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 420 (983)
|.++ .+| . .+++|+.|+|++|+|++ +| ..+++|+.|++++|.|+ .+|
T Consensus 211 N~l~-~l~------------------------~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp 257 (622)
T 3g06_A 211 NRLT-SLP------------------------A---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLP 257 (622)
T ss_dssp SCCS-SCC------------------------C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCC
T ss_pred Cccc-ccC------------------------C---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCC
Confidence 5444 222 2 12445555555555553 33 23345555555555555 344
Q ss_pred ccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCcccccccc
Q 042568 421 SSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMD 476 (983)
Q Consensus 421 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~ 476 (983)
. .+++|+.|+|++|+|+ .+|..+..+++|+. |+|++|.+++.+|..+..++
T Consensus 258 ~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~-L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETT-VNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCE-EECCSCCCCHHHHHHHHHHH
T ss_pred c---ccccCcEEeCCCCCCC-cCCHHHhhccccCE-EEecCCCCCCcCHHHHHhcc
Confidence 3 3455666666666666 45666666666664 66666666666665555443
No 319
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3e-28 Score=268.46 Aligned_cols=249 Identities=24% Similarity=0.192 Sum_probs=147.0
Q ss_pred cccccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCccccc
Q 042568 197 ECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFA 276 (983)
Q Consensus 197 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 276 (983)
+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+ +..+++|++|+|++|++...
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l----------- 95 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQEL----------- 95 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEE-----------
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccc-----------
Confidence 3456678888888888887777788888888888888888875433 67777777877777776432
Q ss_pred ccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccc-cCC
Q 042568 277 SLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELC-LMS 355 (983)
Q Consensus 277 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~ 355 (983)
...++|++|++++|++++..+..+ ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+. .++
T Consensus 96 --~~~~~L~~L~l~~n~l~~~~~~~~----~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 96 --LVGPSIETLHAANNNISRVSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp --EECTTCCEEECCSSCCSEEEECCC----SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred --cCCCCcCEEECCCCccCCcCcccc----CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 223566777777776665443321 3466666666666655555666666666666666666655444442 455
Q ss_pred CCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEcc
Q 042568 356 KLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLS 435 (983)
Q Consensus 356 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls 435 (983)
+|++|+|++|.+++..+ ...+++|+.|+|++|++++ +|..+..+++|+.|+|+
T Consensus 170 ~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-------------------------l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 170 TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-------------------------MGPEFQSAAGVTWISLR 222 (317)
T ss_dssp TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-------------------------ECGGGGGGTTCSEEECT
T ss_pred cCCEEECCCCcCccccc--ccccccCCEEECCCCcCCc-------------------------chhhhcccCcccEEECc
Confidence 56666666665554311 2224555555555555543 22234444555555555
Q ss_pred CccccCcCCccccCCCccceeccccCCCCC-CCCcccccccccccccccc-ccccccCCCc
Q 042568 436 HNKISGIIPSDVAGLRSLKLYLNLSSNHLD-GPLPLELSKMDMVLAIDLS-FNNLSGSIPP 494 (983)
Q Consensus 436 ~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~-~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~ 494 (983)
+|+++ .+|..+..+++|+. |++++|.++ +.+|.++..++.|+.|+++ .+.+.|..|.
T Consensus 223 ~N~l~-~l~~~~~~l~~L~~-L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 223 NNKLV-LIEKALRFSQNLEH-FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TSCCC-EECTTCCCCTTCCE-EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCccc-chhhHhhcCCCCCE-EEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 55554 23444455555553 555555555 4455566666666667766 3345555444
No 320
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=1.1e-27 Score=282.94 Aligned_cols=185 Identities=16% Similarity=0.052 Sum_probs=130.5
Q ss_pred cccCCcEeEEEEE-ECCCcEEEEEEeecccC---------cchhHHHHHHHHHHHhc-CCCCccceeeEEecCCceeEEE
Q 042568 675 IGSGRFGHVYKGV-LQDNTRIAVKVLDLTTT---------GEITGSFKRECQILKRI-RHRNLIRIITICSKPDFKALVL 743 (983)
Q Consensus 675 iG~G~~g~Vy~~~-~~~~~~vAvK~~~~~~~---------~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 743 (983)
.+.|+.|.+..++ .-.|+.||||++..... +...++|.+|+++|+++ .|+||+++++++.+....||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 5667777666655 33588999999965421 12346799999999999 7999999999999999999999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccC
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKG 823 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~ 823 (983)
||++|++|.+++... .+++.. +|+.||++||+|+|++| ||||||||+|||+++++.+||+|||+|+....
T Consensus 322 Eyv~G~~L~d~i~~~----~~l~~~---~I~~QIl~AL~ylH~~G---IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~ 391 (569)
T 4azs_A 322 EKLPGRLLSDMLAAG----EEIDRE---KILGSLLRSLAALEKQG---FWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ 391 (569)
T ss_dssp ECCCSEEHHHHHHTT----CCCCHH---HHHHHHHHHHHHHHHTT---CEESCCCGGGEEECTTSCEEECCCTTEESCC-
T ss_pred ecCCCCcHHHHHHhC----CCCCHH---HHHHHHHHHHHHHHHCC---ceeccCchHhEEECCCCCEEEeecccCeeCCC
Confidence 999999999999753 345543 58999999999999997 99999999999999999999999999986643
Q ss_pred CcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCC
Q 042568 824 IDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRP 883 (983)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p 883 (983)
.. ......+||++|||||++.+. +..++|+||+|++.+++.++..|
T Consensus 392 ~~-------------~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 392 DC-------------SWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp ---------------CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred CC-------------ccccCceechhhccHHHhCCC-CCCcccccccccchhhhccccch
Confidence 21 122346899999999998764 56789999999998888766554
No 321
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.6e-30 Score=313.51 Aligned_cols=465 Identities=12% Similarity=0.089 Sum_probs=249.9
Q ss_pred CcceeeEEECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCC---CCcc------------ccCCCCCCC
Q 042568 64 VCNWSGVKCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQG---HIPA------------ELGSLIRLK 128 (983)
Q Consensus 64 ~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~---~~p~------------~~~~l~~L~ 128 (983)
|++|.++.. .....+++..+... .....+..+++|++|+|++|.... ..|. ....+++|+
T Consensus 34 ck~W~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~ 108 (594)
T 2p1m_B 34 CKSWYEIER----WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108 (594)
T ss_dssp CHHHHHHHH----HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred HHHHHHhhh----hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC
Confidence 557988821 12345555544321 222356788999999999975321 2222 234678999
Q ss_pred EEeccCccCCCCchhhhc-ccccccEEeccCc-ccccc-cCCcccccCCCcccceeecccccccCCCCC---cccccccc
Q 042568 129 QLSLSWNSLQGKIPSQLG-SLHQLEYLDLGNN-KLVGE-IPIPIFCSNSSTSLQYIDLSNNSLTGEIPL---KNECELRN 202 (983)
Q Consensus 129 ~L~Ls~n~l~~~~p~~~~-~L~~L~~L~Ls~N-~l~~~-~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~---~~~~~l~~ 202 (983)
+|+|++|.+++..+..+. .+++|++|+|++| .++.. ++. +. ..+++|++|+|++|.+++..+. .....+++
T Consensus 109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~--~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IA--ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HH--HHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HH--HhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 999999999987787776 6899999999999 55432 222 21 3578999999999987754321 12235678
Q ss_pred cceeecccCc--ccc-ccchhhhccCCcceeccccc-ccccccchhhhcCCCCccEEEccccccccCCCCCCCccccccc
Q 042568 203 LRFLLLWSNR--LVG-QVPQALANSSKLEWLDLESN-MFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASL 278 (983)
Q Consensus 203 L~~L~L~~N~--l~~-~~p~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 278 (983)
|++|++++|. +.. .++..+.++++|++|+|++| .+. .++ ..+..+++|++|+++.+...- ....+..+...+
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~-~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~~l 261 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLA-TLLQRAPQLEELGTGGYTAEV--RPDVYSGLSVAL 261 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHH-HHHHHCTTCSEEECSBCCCCC--CHHHHHHHHHHH
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHH-HHHhcCCcceEcccccccCcc--chhhHHHHHHHH
Confidence 9999999886 321 12223355689999999988 454 344 456778899999876553100 001122233456
Q ss_pred CCCCCccEE-EccCCcccccCCccccccccCeeEEEccCccccccCC-CCCCCCCcccEEeccccccCCC-CCcccccCC
Q 042568 279 ANSSNFQEL-ELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIP-PHISNLVNLTLLNLSSNLLNGT-IPHELCLMS 355 (983)
Q Consensus 279 ~~l~~L~~L-~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~ 355 (983)
.++++|+.| .+.+... +.++..+..+ ++|++|+|++|.+++... ..+..+++|++|++++| ++.. ++.....++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~-~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYLPAVYSVC-SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGGGGGHHHH-TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred hcCCCcccccCCcccch-hhHHHHHHhh-CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 677777777 3333222 1233322222 356666666666543221 12345556666666655 3211 111122355
Q ss_pred CCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCccccc-CcccchhhcccCccCCCCCccccc-CCCCCCEEE
Q 042568 356 KLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFA-NLSQLRRLLLYGNHLSGTIPSSLG-KCVNLEILD 433 (983)
Q Consensus 356 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~p~~l~-~l~~L~~L~ 433 (983)
+|++|+++++.-.| ..+.|.+++.....+. .+++|+.|.++.|.+++..+..+. .+++|+.|+
T Consensus 339 ~L~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~ 403 (594)
T 2p1m_B 339 DLRELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFR 403 (594)
T ss_dssp TCCEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeE
Confidence 55666553321000 0012222222111121 244444444444444433333332 345555555
Q ss_pred cc--C----ccccCcC-----CccccCCCccceeccccCCCCCCCCcccccc-ccccccccccccccccCCCccc-cccc
Q 042568 434 LS--H----NKISGII-----PSDVAGLRSLKLYLNLSSNHLDGPLPLELSK-MDMVLAIDLSFNNLSGSIPPQL-GSCI 500 (983)
Q Consensus 434 Ls--~----N~l~~~~-----p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~ 500 (983)
++ + |.+++.. +..+..+++|+. |++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..++
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~-L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR-LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE-EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred eecccCCCcccccCCchhhHHHHHHhhCCCccE-EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence 55 2 3333111 111334445553 55544 444333333333 5566666666666654444444 4566
Q ss_pred ccceEEeCCCcccccccc-cccCCCCccEEecCCccccCCcCccc-cCCCCcceEeccCCcc
Q 042568 501 ALESLNLSGNSLEGLLPV-SVGQLPYLKQFDVSSNRLFGEIPQSF-QASPTLKQLNFSFNKF 560 (983)
Q Consensus 501 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~l~l~~N~l 560 (983)
+|+.|+|++|++++.... .+..+++|+.|++++|+++......+ ..+++|+...+..+..
T Consensus 482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 777777777777543333 23446677777777776643323333 3456666555555543
No 322
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-27 Score=276.81 Aligned_cols=233 Identities=22% Similarity=0.262 Sum_probs=137.5
Q ss_pred eeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccC
Q 042568 309 LVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSK 388 (983)
Q Consensus 309 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 388 (983)
|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.|++..+ .++|+.|+|++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~ 108 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN 108 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcC
Confidence 4444444444444333444444444444444444443332 4444444444444444443221 14455555555
Q ss_pred ccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCcccc-CCCccceeccccCCCCCCC
Q 042568 389 NKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVA-GLRSLKLYLNLSSNHLDGP 467 (983)
Q Consensus 389 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~L~l~~N~l~~~ 467 (983)
|.+++..+.. +++|+.|+|++|.+++..|..++.+++|+.|+|++|++++.+|..+. .+++|+. |+|++|.|++.
T Consensus 109 N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~-L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH-LNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE-EECTTSCCCEE
T ss_pred CcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE-EecCCCccccc
Confidence 5555433322 34455555555555554455555555555555555555555555543 4555553 55666655543
Q ss_pred CccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCcccc-CCcCccccC
Q 042568 468 LPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLF-GEIPQSFQA 546 (983)
Q Consensus 468 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~ 546 (983)
.+ +..+++|+.|+|++|+|++ +|+.+..+++|+.|+|++|+|++ +|..+..+++|+.|++++|++. +.+|..+..
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 22 2246677788888888875 44558888888888888888885 6777888888999999999887 677788888
Q ss_pred CCCcceEecc
Q 042568 547 SPTLKQLNFS 556 (983)
Q Consensus 547 l~~L~~l~l~ 556 (983)
++.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 8888877775
No 323
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.9e-25 Score=241.00 Aligned_cols=228 Identities=22% Similarity=0.254 Sum_probs=138.6
Q ss_pred EEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccc
Q 042568 312 IHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKL 391 (983)
Q Consensus 312 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 391 (983)
++..+..+. .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 444444444 4454442 3566666666666655555566666666666666666655555566666666666666666
Q ss_pred cCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccc
Q 042568 392 SGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLE 471 (983)
Q Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~ 471 (983)
++..+..|.++++|+.|++++|.+++..+..+..+++|++|++++|++++. .+|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~l~~~ 144 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF------------------------KLPEY 144 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC------------------------CCCGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee------------------------cCchh
Confidence 555555555555555555555555544443445555555555555554432 23555
Q ss_pred cccccccccccccccccccCCCcccccccccc----eEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCC
Q 042568 472 LSKMDMVLAIDLSFNNLSGSIPPQLGSCIALE----SLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQAS 547 (983)
Q Consensus 472 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l 547 (983)
+..+++|+.|+|++|++++..+..+..+.+|+ .|++++|++++..+..+. ..+|+.|++++|++++..+..|..+
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccc
Confidence 55555666666666666655555565555555 778888888765554444 3478888888888886656667888
Q ss_pred CCcceEeccCCccccccCCC
Q 042568 548 PTLKQLNFSFNKFSGNISNK 567 (983)
Q Consensus 548 ~~L~~l~l~~N~l~~~~~~~ 567 (983)
++|++|++++|++++..+..
T Consensus 224 ~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CSCCEEECCSSCBCCCTTTT
T ss_pred ccccEEEccCCcccccCCch
Confidence 88888888888888776643
No 324
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.1e-25 Score=237.71 Aligned_cols=231 Identities=24% Similarity=0.256 Sum_probs=187.8
Q ss_pred cEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeC
Q 042568 285 QELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSN 364 (983)
Q Consensus 285 ~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 364 (983)
..++.++.+++ .+|..+ +.+|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|+|++
T Consensus 10 ~~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 10 ITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp TEEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence 35677777776 455543 46799999999999988888999999999999999999988788899999999999999
Q ss_pred CcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCC-CcccccCCCCCCEEEccCccccCcC
Q 042568 365 NSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGT-IPSSLGKCVNLEILDLSHNKISGII 443 (983)
Q Consensus 365 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~ 443 (983)
|.+++..+..|..+++|+.|++++|++.+..+..+..+++|+.|++++|.+++. +|..+..+++|+.|++++|++++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 999999889999999999999999999988887899999999999999999864 6899999999999999999998776
Q ss_pred CccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCC
Q 042568 444 PSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQL 523 (983)
Q Consensus 444 p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 523 (983)
+..+..+..++. +++ .|++++|++++..+..+. ..+|+.|+|++|++++..+..+..+
T Consensus 166 ~~~~~~l~~L~~-l~l--------------------~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 166 CTDLRVLHQMPL-LNL--------------------SLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp GGGGHHHHTCTT-CCE--------------------EEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred HHHhhhhhhccc-cce--------------------eeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccc
Confidence 666655554442 110 466666666644343333 3478888888888886666667778
Q ss_pred CCccEEecCCccccCCcC
Q 042568 524 PYLKQFDVSSNRLFGEIP 541 (983)
Q Consensus 524 ~~L~~L~ls~N~l~~~~p 541 (983)
++|+.|++++|++++..|
T Consensus 224 ~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CSCCEEECCSSCBCCCTT
T ss_pred ccccEEEccCCcccccCC
Confidence 888888888888876543
No 325
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.3e-28 Score=294.70 Aligned_cols=422 Identities=15% Similarity=0.104 Sum_probs=269.4
Q ss_pred eEEEEEcccCCccccc---------------ccccccCCCCcEEeCcCCcCCCCCccccC-CCCCCCEEeccCc-cCCCC
Q 042568 78 KVVELDLSARSIYGTI---------------SPALANLSSLIVLDLSKNFFQGHIPAELG-SLIRLKQLSLSWN-SLQGK 140 (983)
Q Consensus 78 ~v~~l~l~~~~l~g~~---------------~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n-~l~~~ 140 (983)
++..|+++++.....+ +.....+++|++|+|++|.+++..+..+. .+++|++|+|++| .++..
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 146 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH
Confidence 4788888876432111 12245788999999999999987777775 6899999999999 66532
Q ss_pred -chhhhcccccccEEeccCcccccccCCccccc-CCCcccceeecccccccCCCCCccc----ccccccceeecccC-cc
Q 042568 141 -IPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCS-NSSTSLQYIDLSNNSLTGEIPLKNE----CELRNLRFLLLWSN-RL 213 (983)
Q Consensus 141 -~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~-~~l~~L~~L~Ls~N~l~~~ip~~~~----~~l~~L~~L~L~~N-~l 213 (983)
++..+.++++|++|+|++|.+++..+..+..+ ..+++|++|++++|. +.++...+ ..+++|++|++++| .+
T Consensus 147 ~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 55666689999999999999886554444322 367899999999997 23332222 34699999999999 44
Q ss_pred ccccchhhhccCCcceecc-------cccccccccchhhhcCCCCccEE-EccccccccCCCCCCCcccccccCCCCCcc
Q 042568 214 VGQVPQALANSSKLEWLDL-------ESNMFSGELPSEIISKMPQLQFL-YLSYNDFVSHDGNTNLEPFFASLANSSNFQ 285 (983)
Q Consensus 214 ~~~~p~~l~~l~~L~~L~L-------s~N~l~~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~ 285 (983)
.+ +|..+..+++|++|++ +.|.+. .++. .+..+++|+.| .+..... ..+...+..+++|+
T Consensus 225 ~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~---------~~l~~~~~~~~~L~ 292 (594)
T 2p1m_B 225 EK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVP---------AYLPAVYSVCSRLT 292 (594)
T ss_dssp HH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCG---------GGGGGGHHHHTTCC
T ss_pred HH-HHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccch---------hhHHHHHHhhCCCC
Confidence 54 8899999999999994 455565 3444 46889999999 3433221 12233344678999
Q ss_pred EEEccCCcccccCCcc-ccccccCeeEEEccCcccccc-CCCCCCCCCcccEEeccc---------cccCCCCCcccc-c
Q 042568 286 ELELAGNNLGGMIPSI-IGDLSTNLVQIHLDCNLIYGK-IPPHISNLVNLTLLNLSS---------NLLNGTIPHELC-L 353 (983)
Q Consensus 286 ~L~L~~n~l~~~~p~~-~~~l~~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~---------N~l~~~~p~~l~-~ 353 (983)
+|++++|.+++..... +..+ ++|++|++++| +.+. ++.....+++|++|++++ +.+++.....+. .
T Consensus 293 ~L~L~~~~l~~~~l~~~~~~~-~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~ 370 (594)
T 2p1m_B 293 TLNLSYATVQSYDLVKLLCQC-PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370 (594)
T ss_dssp EEECTTCCCCHHHHHHHHTTC-TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH
T ss_pred EEEccCCCCCHHHHHHHHhcC-CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh
Confidence 9999999987543333 3344 68999999998 4432 222233578999999954 444433222232 3
Q ss_pred CCCCcEEEeeCCcccCCCCCCCC-CCCCCcEEEcc--C----ccccCcCcccccCcccchhhcccCccCCCCCcccccCC
Q 042568 354 MSKLERVYLSNNSLSGEIPSAFG-DIPHLGLLDLS--K----NKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKC 426 (983)
Q Consensus 354 l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l 426 (983)
+++|+.|.++.|.+++..+..+. .+++|+.|+|+ + |.+++...+ ..++..+..+
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~-------------------~~~~~l~~~~ 431 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD-------------------IGFGAIVEHC 431 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH-------------------HHHHHHHHHC
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh-------------------hHHHHHHhhC
Confidence 67777777777777654443343 36667777776 2 333311100 0011123445
Q ss_pred CCCCEEEccCccccCcCCccccC-CCccceeccccCCCCCCCCcccc-ccccccccccccccccccCCCc-ccccccccc
Q 042568 427 VNLEILDLSHNKISGIIPSDVAG-LRSLKLYLNLSSNHLDGPLPLEL-SKMDMVLAIDLSFNNLSGSIPP-QLGSCIALE 503 (983)
Q Consensus 427 ~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~~L~l~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~ 503 (983)
++|+.|+|++ .+++..+..+.. +++|+. |++++|.+++..+..+ ..+++|+.|+|++|.+++..+. .+..+++|+
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~-L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEM-LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHHCTTCCE-EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCccEEeecC-cccHHHHHHHHHhchhccE-eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 5566666655 444333333333 555554 6666666654434333 4567777777777777544333 334577888
Q ss_pred eEEeCCCcccccccccc-cCCCCccEEecCCccc
Q 042568 504 SLNLSGNSLEGLLPVSV-GQLPYLKQFDVSSNRL 536 (983)
Q Consensus 504 ~L~Ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~l 536 (983)
.|++++|+++......+ ..+++|+...+..+.-
T Consensus 510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp EEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 88888888754433334 4567777766666543
No 326
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=7.9e-24 Score=227.37 Aligned_cols=205 Identities=25% Similarity=0.305 Sum_probs=124.8
Q ss_pred cccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhccc
Q 042568 332 NLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLY 411 (983)
Q Consensus 332 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 411 (983)
+.+.+++++|+++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|+++...+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4566777777776 3454332 456666666666665555566666666666666666654444444555555555555
Q ss_pred CccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccC
Q 042568 412 GNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGS 491 (983)
Q Consensus 412 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 491 (983)
+|.+++..+..|..+++|++|++++| ++++..|..|..+++|++|+|++|+|++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n-------------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRN-------------------------QLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSS-------------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCC-------------------------ccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 55555433344444444555555444 44444444455555666666666666644
Q ss_pred CCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCcccccc
Q 042568 492 IPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNI 564 (983)
Q Consensus 492 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 564 (983)
.+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 4445666777777777777777666666777777777777777777555556777777777777777766543
No 327
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.6e-23 Score=224.92 Aligned_cols=203 Identities=25% Similarity=0.288 Sum_probs=158.9
Q ss_pred cCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEc
Q 042568 307 TNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDL 386 (983)
Q Consensus 307 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 386 (983)
...+.+++++|.++ .+|..+. ++|++|+|++|++++..+..+..+++|++|+|++|.++...+..|..+++|++|+|
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35778999999998 5777664 68999999999999877778999999999999999999877778899999999999
Q ss_pred cCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCC
Q 042568 387 SKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDG 466 (983)
Q Consensus 387 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~ 466 (983)
++|++++..+..|..+++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+. |++++|++++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE-LRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce-eEecCCcCcE
Confidence 999999888888999999999999999999888888999999999999999998766666777777775 7777766665
Q ss_pred CCccccccccccccccccccccccCCCcccccccccceEEeCCCccc
Q 042568 467 PLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLE 513 (983)
Q Consensus 467 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 513 (983)
..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 44444555555555555555555333333444444444444444443
No 328
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.91 E-value=4.6e-25 Score=259.16 Aligned_cols=193 Identities=17% Similarity=0.157 Sum_probs=147.7
Q ss_pred CCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCc-------chhHHHHHHHHHHHhcCCCCccceeeEEecCCceeE
Q 042568 669 FCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTG-------EITGSFKRECQILKRIRHRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 669 f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~-------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 741 (983)
+...++||+|+||.||+|.. .++.+|+|........ ...+++.+|++++++++||||+++..++...+..++
T Consensus 338 ~~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~l 416 (540)
T 3en9_A 338 KIPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRI 416 (540)
T ss_dssp ----------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEE
T ss_pred CCCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEE
Confidence 34567899999999999954 4788999986432211 124568999999999999999977777777788899
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
||||+++++|.+++.. +..++.|+++||+|||+++ |+||||||+|||++. .+||+|||+|+..
T Consensus 417 VmE~~~ggsL~~~l~~------------~~~i~~qi~~aL~~LH~~g---IiHrDiKp~NILl~~--~~kL~DFGla~~~ 479 (540)
T 3en9_A 417 MMSYINGKLAKDVIED------------NLDIAYKIGEIVGKLHKND---VIHNDLTTSNFIFDK--DLYIIDFGLGKIS 479 (540)
T ss_dssp EEECCCSEEHHHHSTT------------CTHHHHHHHHHHHHHHHTT---EECTTCCTTSEEESS--SEEECCCTTCEEC
T ss_pred EEECCCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHCc---CccCCCCHHHEEECC--eEEEEECccCEEC
Confidence 9999999999999874 4689999999999999996 999999999999999 9999999999987
Q ss_pred cCCcccccccCCCCccccccCccccccccccccccCC--CCCCccchhHHHHHHHHHHHhCCCCCC
Q 042568 822 KGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMG--KRASTHGDVYSFGVLLLEIVTGRRPTD 885 (983)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~k~Dv~SlG~il~elltg~~p~~ 885 (983)
........ ..........||+.|||||++.. ..|+..+|+||..+-..+-+.++.+|.
T Consensus 480 ~~~~~~~~------~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 480 NLDEDKAV------DLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp CCHHHHHH------HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred CCcccccc------chhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 54321100 00001234689999999999987 567888999999999999998888763
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.6e-24 Score=230.22 Aligned_cols=163 Identities=23% Similarity=0.269 Sum_probs=65.8
Q ss_pred CCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccc
Q 042568 375 FGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLK 454 (983)
Q Consensus 375 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 454 (983)
+..+++|++|+|++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 33344444444444444433333333334444444444444333333344444444444444444433333333333333
Q ss_pred eeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCc
Q 042568 455 LYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSN 534 (983)
Q Consensus 455 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 534 (983)
. |++++|++++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++.+. +++|+.|+++.|
T Consensus 161 ~-L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n 232 (272)
T 3rfs_A 161 E-LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN 232 (272)
T ss_dssp E-EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHH
T ss_pred E-EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHH
Confidence 2 33333333333333333333444444444444433333344444444444444444321 223444444444
Q ss_pred cccCCcCcccc
Q 042568 535 RLFGEIPQSFQ 545 (983)
Q Consensus 535 ~l~~~~p~~~~ 545 (983)
+++|.+|.+++
T Consensus 233 ~~~g~ip~~~~ 243 (272)
T 3rfs_A 233 KHSGVVRNSAG 243 (272)
T ss_dssp HTGGGBBCTTS
T ss_pred hCCCcccCccc
Confidence 44444444433
No 330
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=9.8e-24 Score=228.61 Aligned_cols=178 Identities=26% Similarity=0.254 Sum_probs=108.3
Q ss_pred CCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccc
Q 042568 380 HLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNL 459 (983)
Q Consensus 380 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l 459 (983)
+++.|+|++|++++..+..|.++++|+.|+|++|.+++. +.. ..+++|++|++++|+++ .+|..+..+++|+. |++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~-L~l 107 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTV-LDV 107 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCE-EEC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCE-EEC
Confidence 444444444444444444444455555555555554422 221 45555666666666665 44555555666654 666
Q ss_pred cCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCC
Q 042568 460 SSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGE 539 (983)
Q Consensus 460 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 539 (983)
++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++|+|+ .
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 666666555556666666666677777666555555666777777777777777655555667777777777777776 6
Q ss_pred cCccccCCCCcceEeccCCcccc
Q 042568 540 IPQSFQASPTLKQLNFSFNKFSG 562 (983)
Q Consensus 540 ~p~~~~~l~~L~~l~l~~N~l~~ 562 (983)
+|..+..+++|+.+++++|++.+
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCC
T ss_pred cChhhcccccCCeEEeCCCCccC
Confidence 67666667777777777776654
No 331
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=4.9e-25 Score=247.63 Aligned_cols=264 Identities=19% Similarity=0.182 Sum_probs=123.6
Q ss_pred EeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCch----hhhcccc-cccEEeccCcccccccCCcccc-cCC-Cccc
Q 042568 106 LDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIP----SQLGSLH-QLEYLDLGNNKLVGEIPIPIFC-SNS-STSL 178 (983)
Q Consensus 106 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~L~-~L~~L~Ls~N~l~~~~p~~~~~-~~~-l~~L 178 (983)
++|+.|+++|.+|..+...++|++|+|++|.|++..+ ..|.+++ +|++|+|++|++++..+..+.. +.. .++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4455555555555555555555555555555554444 4455555 5555555555555333322220 000 0333
Q ss_pred ceeecccccccCCCCCc---ccccc-cccceeecccCccccccchhhhc-----cCCcceecccccccccccchhhhcCC
Q 042568 179 QYIDLSNNSLTGEIPLK---NECEL-RNLRFLLLWSNRLVGQVPQALAN-----SSKLEWLDLESNMFSGELPSEIISKM 249 (983)
Q Consensus 179 ~~L~Ls~N~l~~~ip~~---~~~~l-~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~~~~~~~~~~l 249 (983)
++|+|++|.+++..+.. .+..+ ++|++|+|++|++++..+..+.. .++|++|+|++|++++..+.
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~------ 156 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD------ 156 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH------
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH------
Confidence 33333333333211110 11122 55666666666665555544433 14555666665555532111
Q ss_pred CCccEEEccccccccCCCCCCCcccccccCCCC-CccEEEccCCcccccCCccccc----cccCeeEEEccCcccccc--
Q 042568 250 PQLQFLYLSYNDFVSHDGNTNLEPFFASLANSS-NFQELELAGNNLGGMIPSIIGD----LSTNLVQIHLDCNLIYGK-- 322 (983)
Q Consensus 250 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~----l~~~L~~L~L~~N~l~~~-- 322 (983)
.+...+...+ +|++|+|++|++++..+..+.. .+++|++|+|++|.+++.
T Consensus 157 -----------------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~ 213 (362)
T 3goz_A 157 -----------------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY 213 (362)
T ss_dssp -----------------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred -----------------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH
Confidence 1122222222 4444444444444333322221 112455555555554431
Q ss_pred --CCCCCCC-CCcccEEeccccccCCCCC----cccccCCCCcEEEeeCCcccCC-------CCCCCCCCCCCcEEEccC
Q 042568 323 --IPPHISN-LVNLTLLNLSSNLLNGTIP----HELCLMSKLERVYLSNNSLSGE-------IPSAFGDIPHLGLLDLSK 388 (983)
Q Consensus 323 --~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~-------~p~~~~~l~~L~~L~Ls~ 388 (983)
++..+.. .++|++|+|++|.+++..+ ..+..+++|++|+|++|.+.+. ++..+..+++|+.||+++
T Consensus 214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 2223333 2356666666666654433 2234456666666666664432 234566777777777777
Q ss_pred ccccCcCccc
Q 042568 389 NKLSGSIPDS 398 (983)
Q Consensus 389 N~l~~~~~~~ 398 (983)
|++.+..+..
T Consensus 294 N~l~~~~~~~ 303 (362)
T 3goz_A 294 KEIHPSHSIP 303 (362)
T ss_dssp CBCCGGGCHH
T ss_pred CcCCCcchHH
Confidence 7776554433
No 332
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.3e-23 Score=225.95 Aligned_cols=204 Identities=25% Similarity=0.249 Sum_probs=121.6
Q ss_pred eeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccC
Q 042568 309 LVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSK 388 (983)
Q Consensus 309 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 388 (983)
|+.|++++|.++. .+.+..+++|++|++++|.+++. ..+..+++|++|+|++|.+++..+..|+.+++|++|+|++
T Consensus 43 L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 43 IDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp CCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred eeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 4444444444431 12345555666666666665542 2455566666666666666655555566666666666666
Q ss_pred ccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCC
Q 042568 389 NKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPL 468 (983)
Q Consensus 389 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~ 468 (983)
|++++..+..|+.+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+. |++++|++++..
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~ 197 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD-LRLYQNQLKSVP 197 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSCCC
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE-EECCCCcCCccC
Confidence 6666555555666666666666666666555555566666666666666666555555566666664 666666666655
Q ss_pred ccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCC
Q 042568 469 PLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLP 524 (983)
Q Consensus 469 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 524 (983)
|..+..+++|+.|+|++|.+.+. +++|+.|+++.|.++|.+|.+++.+.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 55566666666666666666543 33466666677777777776666544
No 333
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.4e-23 Score=225.53 Aligned_cols=201 Identities=23% Similarity=0.201 Sum_probs=110.0
Q ss_pred CCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhc
Q 042568 330 LVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLL 409 (983)
Q Consensus 330 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 409 (983)
+++++++++++|.++ .+|..+. ++++.|+|++|.+++..|..|..+++|+.|+|++|+|++..+ .+.+++|+.|+
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence 334444444444444 2232221 344444444444444444444444444444444444443222 14445555555
Q ss_pred ccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccc
Q 042568 410 LYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLS 489 (983)
Q Consensus 410 l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 489 (983)
+++|+++ .+|..+..+++|++|++++|++++..|..|..+++|+. |+|++|++++..+..|..+++|+.|+|++|+|+
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE-LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE-EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE-EECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 5555554 44555555555666666666665555555555666654 666666666555555566666666666666666
Q ss_pred cCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccC
Q 042568 490 GSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFG 538 (983)
Q Consensus 490 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 538 (983)
+..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++..
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 444445566777777777777776 466666666677777777777653
No 334
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2.1e-23 Score=221.44 Aligned_cols=191 Identities=26% Similarity=0.355 Sum_probs=156.5
Q ss_pred CCcceeeEEECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCch
Q 042568 63 HVCNWSGVKCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIP 142 (983)
Q Consensus 63 ~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 142 (983)
+||.|.|++|... .+.++++++++. .+|..+. +.|++|+|++|.+++..|..|+++++|++|+|++|.|++..|
T Consensus 3 ~Cp~~~gC~C~~~---~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNEG---KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEGG---GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCCC---CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 4889999999643 346889999887 6776665 689999999999998888899999999999999999998888
Q ss_pred hhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhh
Q 042568 143 SQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALA 222 (983)
Q Consensus 143 ~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 222 (983)
..|..+++|++|+|++|+++ .+|...+ ..+++|++|+|++|.++ .+|...+..+++|++|+|++|++++..+..|+
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 152 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLA-SLPLGVF--DHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCC-CCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred hHhccCCcCCEEECCCCccc-ccChhHh--cccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcC
Confidence 88999999999999999998 4444333 47788888888888888 55656667788888888888888877777888
Q ss_pred ccCCcceecccccccccccchhhhcCCCCccEEEcccccccc
Q 042568 223 NSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVS 264 (983)
Q Consensus 223 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 264 (983)
.+++|++|+|++|+++ .++...+..+++|++|+|++|.+..
T Consensus 153 ~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 8888888888888887 5666666777777777777777654
No 335
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=230.75 Aligned_cols=224 Identities=23% Similarity=0.222 Sum_probs=176.3
Q ss_pred cccEEeccccccCCCCCc---ccccCCCCcEEEeeCCcccCCCCCCC--CCCCCCcEEEccCccccCcCc----ccccCc
Q 042568 332 NLTLLNLSSNLLNGTIPH---ELCLMSKLERVYLSNNSLSGEIPSAF--GDIPHLGLLDLSKNKLSGSIP----DSFANL 402 (983)
Q Consensus 332 ~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~----~~~~~l 402 (983)
.++.|.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|+|++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355666666555421100 12234668888898888888888887 888899999999999887555 345678
Q ss_pred ccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCc--C--CccccCCCccceeccccCCCCCCCCcc----cccc
Q 042568 403 SQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGI--I--PSDVAGLRSLKLYLNLSSNHLDGPLPL----ELSK 474 (983)
Q Consensus 403 ~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~~L~l~~N~l~~~~p~----~~~~ 474 (983)
++|++|+|++|.+++..|..|..+++|++|+|++|++.+. + +..+..+++|+. |+|++|+++. +|. .+..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~-L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN-LALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS-CBCCSSCCCC-HHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE-EECCCCCCCc-hHHHHHHHHhc
Confidence 8999999999999888888899999999999999998652 2 233467888986 9999999973 333 2578
Q ss_pred ccccccccccccccccCCCcccccc---cccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcc
Q 042568 475 MDMVLAIDLSFNNLSGSIPPQLGSC---IALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLK 551 (983)
Q Consensus 475 l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 551 (983)
+++|++|||++|+|++..|..+..+ ++|+.|+|++|+|+ .+|..+. ++|+.|+|++|+|++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8999999999999998888888777 69999999999999 6777764 7999999999999953 44 67889999
Q ss_pred eEeccCCcccc
Q 042568 552 QLNFSFNKFSG 562 (983)
Q Consensus 552 ~l~l~~N~l~~ 562 (983)
.|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999874
No 336
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=227.62 Aligned_cols=226 Identities=20% Similarity=0.248 Sum_probs=154.6
Q ss_pred CccEEEccCCcccccCCcc---ccccccCeeEEEccCccccccCCCCC--CCCCcccEEeccccccCCCCC----ccccc
Q 042568 283 NFQELELAGNNLGGMIPSI---IGDLSTNLVQIHLDCNLIYGKIPPHI--SNLVNLTLLNLSSNLLNGTIP----HELCL 353 (983)
Q Consensus 283 ~L~~L~L~~n~l~~~~p~~---~~~l~~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~l~~ 353 (983)
.++.+.++++.++...-.. .... ++|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4556666666554211110 1111 358899999999998888888 889999999999999997655 34567
Q ss_pred CCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCc--C--cccccCcccchhhcccCccCCCCCcc----cccC
Q 042568 354 MSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGS--I--PDSFANLSQLRRLLLYGNHLSGTIPS----SLGK 425 (983)
Q Consensus 354 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~--~~~~~~l~~L~~L~l~~N~l~~~~p~----~l~~ 425 (983)
+++|++|+|++|.+.+..|..|+.+++|++|+|++|++.+. + +..+..+++|++|+|++|+++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 89999999999999988889999999999999999998652 2 223467888888888888886 3343 2467
Q ss_pred CCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceE
Q 042568 426 CVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESL 505 (983)
Q Consensus 426 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 505 (983)
+++|++|+|++|++++..|..+..+. .+++|++|+|++|+|+ .+|..+. ++|+.|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~----------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCM----------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCC----------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred CCCCCEEECCCCCCCccchhhHHhcc----------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence 78888888888888876666655442 0123444455555554 4444443 456666
Q ss_pred EeCCCcccccccccccCCCCccEEecCCcccc
Q 042568 506 NLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLF 537 (983)
Q Consensus 506 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 537 (983)
+|++|+|++. |. +..+++|+.|+|++|+++
T Consensus 278 ~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 278 DLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp ECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred ECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 6666666643 22 455566666666666664
No 337
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=9.3e-25 Score=243.04 Aligned_cols=163 Identities=19% Similarity=0.229 Sum_probs=111.7
Q ss_pred CcceeeEEECCCCCeEEEEEcccCCcccccccccccC--CCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCC-
Q 042568 64 VCNWSGVKCNNSRNKVVELDLSARSIYGTISPALANL--SSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGK- 140 (983)
Q Consensus 64 ~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~- 140 (983)
|..|.++.|+.. .++.+|++++.+. +..+..+ +.++.|++++|.+++..|. +..+++|++|+|++|.+++.
T Consensus 36 c~~W~~~~~~~~--~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 36 CKRWYRLASDES--LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp CHHHHHHHTCST--TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHhcCch--hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 567999988643 4778999988776 4566777 8999999999999876655 66789999999999998865
Q ss_pred chhhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccC-cccc-ccc
Q 042568 141 IPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSN-RLVG-QVP 218 (983)
Q Consensus 141 ~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~-~~p 218 (983)
+|..+..+++|++|+|++|++++..|..+. .+++|++|+|++| .+++ .++
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~----------------------------~~~~L~~L~L~~~~~l~~~~l~ 161 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLA----------------------------KNSNLVRLNLSGCSGFSEFALQ 161 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHT----------------------------TCTTCSEEECTTCBSCCHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHh----------------------------cCCCCCEEECCCCCCCCHHHHH
Confidence 888889999999999999988765555443 3445555555555 3443 244
Q ss_pred hhhhccCCcceeccccc-ccccccchhhhcCCC-CccEEEcccc
Q 042568 219 QALANSSKLEWLDLESN-MFSGELPSEIISKMP-QLQFLYLSYN 260 (983)
Q Consensus 219 ~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~-~L~~L~Ls~N 260 (983)
..+.++++|++|+|++| .+++......+..++ +|++|+|++|
T Consensus 162 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 55566666666666666 555321122334444 5555555544
No 338
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=4.7e-25 Score=247.78 Aligned_cols=250 Identities=22% Similarity=0.159 Sum_probs=142.1
Q ss_pred EccCccccccCCCCCCCCCcccEEeccccccCCCCC----cccccCC-CCcEEEeeCCcccCCCCCCCCCC-----CCCc
Q 042568 313 HLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIP----HELCLMS-KLERVYLSNNSLSGEIPSAFGDI-----PHLG 382 (983)
Q Consensus 313 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~L~ 382 (983)
++++|.++|.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 344444444444444444445555555555554433 3444444 55555555555554444444433 5555
Q ss_pred EEEccCccccCcCcccccCc-----ccchhhcccCccCCCCCccccc----C-CCCCCEEEccCccccCcCC----cccc
Q 042568 383 LLDLSKNKLSGSIPDSFANL-----SQLRRLLLYGNHLSGTIPSSLG----K-CVNLEILDLSHNKISGIIP----SDVA 448 (983)
Q Consensus 383 ~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~l~~N~l~~~~p~~l~----~-l~~L~~L~Ls~N~l~~~~p----~~~~ 448 (983)
+|+|++|++++..+..++.. ++|+.|+|++|.+++..+..+. . .++|++|+|++|++++..+ ..+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 55555555554444433322 5556666666665544443322 2 2466666666666664322 2223
Q ss_pred CCC-ccceeccccCCCCCCCCccccccc-----cccccccccccccccC----CCccccc-ccccceEEeCCCccccccc
Q 042568 449 GLR-SLKLYLNLSSNHLDGPLPLELSKM-----DMVLAIDLSFNNLSGS----IPPQLGS-CIALESLNLSGNSLEGLLP 517 (983)
Q Consensus 449 ~l~-~L~~~L~l~~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~p 517 (983)
..+ +|+. |+|++|++++..+..+... ++|+.|||++|.|++. ++..+.. .++|+.|+|++|++++..+
T Consensus 164 ~~~~~L~~-L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 164 AIPANVNS-LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp TSCTTCCE-EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred cCCccccE-eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 333 5664 6777777666555444433 4777777777777752 3444544 3478888888888876544
Q ss_pred ----ccccCCCCccEEecCCccccCC-------cCccccCCCCcceEeccCCccccc
Q 042568 518 ----VSVGQLPYLKQFDVSSNRLFGE-------IPQSFQASPTLKQLNFSFNKFSGN 563 (983)
Q Consensus 518 ----~~~~~l~~L~~L~ls~N~l~~~-------~p~~~~~l~~L~~l~l~~N~l~~~ 563 (983)
..+..+++|+.|+|++|++.+. ++..+.++++|+.|++++|++...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3346667888888888875432 334677788888888888887654
No 339
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=7.5e-23 Score=215.51 Aligned_cols=199 Identities=18% Similarity=0.229 Sum_probs=109.9
Q ss_pred cccEEeccccccCCCCCcccccCCCCcEEEeeCCc-ccCCCCCCCCCCCCCcEEEccC-ccccCcCcccccCcccchhhc
Q 042568 332 NLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNS-LSGEIPSAFGDIPHLGLLDLSK-NKLSGSIPDSFANLSQLRRLL 409 (983)
Q Consensus 332 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~ 409 (983)
+|++|++++|++++..+..+..+++|++|++++|. +++..+..|.++++|++|+|++ |++++..+..|.++++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55566666665554444455555555555555554 5544444555555555555555 555544444444455555555
Q ss_pred ccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCC-CCCCCCccccccccccc-cccccccc
Q 042568 410 LYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSN-HLDGPLPLELSKMDMVL-AIDLSFNN 487 (983)
Q Consensus 410 l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~ 487 (983)
+++|.+++ +|. |..+++|+ .|+. |++++| .+++..+..|.++++|+ .|++++|+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~---------------------~L~~-L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTD---------------------IFFI-LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCC---------------------SEEE-EEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred CCCCCCcc-ccc-cccccccc---------------------cccE-EECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 55554442 333 44444443 0013 555555 55544444555566666 66666666
Q ss_pred cccCCCcccccccccceEEeCCCc-ccccccccccCC-CCccEEecCCccccCCcCccccCCCCcceEeccCC
Q 042568 488 LSGSIPPQLGSCIALESLNLSGNS-LEGLLPVSVGQL-PYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFN 558 (983)
Q Consensus 488 l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N 558 (983)
++ .+|......++|+.|+|++|+ +++..+..|..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 168 l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 168 FT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred Cc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 66 444433333667777777774 776556667777 77777777777776 44443 4666777777665
No 340
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.1e-22 Score=214.32 Aligned_cols=187 Identities=19% Similarity=0.209 Sum_probs=140.7
Q ss_pred ccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccc-cCCCCCcccccCCCCcEEEeeC-CcccCCC
Q 042568 294 LGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNL-LNGTIPHELCLMSKLERVYLSN-NSLSGEI 371 (983)
Q Consensus 294 l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~ 371 (983)
++ .+|. ++.+|++|++++|++++..+..|..+++|++|++++|+ ++...+..+..+++|++|++++ |.+++..
T Consensus 23 l~-~ip~----~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQ-RIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CS-SCCC----CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred cc-ccCC----CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 44 4565 34589999999999998877799999999999999997 8877777899999999999999 9999888
Q ss_pred CCCCCCCCCCcEEEccCccccCcCcccccCcccch---hhcccCc-cCCCCCcccccCCCCCC-EEEccCccccCcCCcc
Q 042568 372 PSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLR---RLLLYGN-HLSGTIPSSLGKCVNLE-ILDLSHNKISGIIPSD 446 (983)
Q Consensus 372 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---~L~l~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~ 446 (983)
+..|.++++|+.|++++|++++ +|. |..+++|+ .|++++| .+++..+..|..+++|+ .|++++|+++ .+|..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~ 174 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh
Confidence 8899999999999999999996 665 88888887 8888888 88866666788888888 8888888887 44433
Q ss_pred ccCCCccceeccccCCC-CCCCCccccccc-cccccccccccccc
Q 042568 447 VAGLRSLKLYLNLSSNH-LDGPLPLELSKM-DMVLAIDLSFNNLS 489 (983)
Q Consensus 447 ~~~l~~L~~~L~l~~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~ 489 (983)
....++|+. |++++|+ +++..+..|..+ ++|+.|||++|+++
T Consensus 175 ~~~~~~L~~-L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 175 AFNGTKLDA-VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTTTCEEEE-EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred hcCCCCCCE-EEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 222245553 5555552 443333334444 44444444444443
No 341
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.8e-25 Score=252.24 Aligned_cols=188 Identities=20% Similarity=0.212 Sum_probs=128.9
Q ss_pred CCCCCCcEEEccCccccC----cCcccccCcccchhhcccCccCCCCCccc----ccCC---------CCCCEEEccCcc
Q 042568 376 GDIPHLGLLDLSKNKLSG----SIPDSFANLSQLRRLLLYGNHLSGTIPSS----LGKC---------VNLEILDLSHNK 438 (983)
Q Consensus 376 ~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~p~~----l~~l---------~~L~~L~Ls~N~ 438 (983)
..+++|+.|+|++|++++ .+|..+..+++|+.|+|++|.+++..+.. +..+ ++|++|+|++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 344444445555544443 23444444455555555555443222222 2222 677777777777
Q ss_pred cc-CcCC---ccccCCCccceeccccCCCCC--C---CCccccccccccccccccccccc----cCCCcccccccccceE
Q 042568 439 IS-GIIP---SDVAGLRSLKLYLNLSSNHLD--G---PLPLELSKMDMVLAIDLSFNNLS----GSIPPQLGSCIALESL 505 (983)
Q Consensus 439 l~-~~~p---~~~~~l~~L~~~L~l~~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L 505 (983)
++ +.+| ..+..+++|+. |++++|+++ | ..|..+..+++|+.|+|++|.++ +.+|..+..+++|+.|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~-L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHT-VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCE-EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCE-EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 76 3334 34556677775 788888776 2 34447788888999999999886 5778888889999999
Q ss_pred EeCCCccccc----ccccc--cCCCCccEEecCCccccC----CcCccc-cCCCCcceEeccCCcccccc
Q 042568 506 NLSGNSLEGL----LPVSV--GQLPYLKQFDVSSNRLFG----EIPQSF-QASPTLKQLNFSFNKFSGNI 564 (983)
Q Consensus 506 ~Ls~N~l~~~----~p~~~--~~l~~L~~L~ls~N~l~~----~~p~~~-~~l~~L~~l~l~~N~l~~~~ 564 (983)
+|++|++++. +|..+ +.+++|+.|+|++|++++ .+|..+ .++++|++|++++|++++..
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 9999999876 56666 448999999999999987 488877 66899999999999987544
No 342
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=7.9e-25 Score=248.47 Aligned_cols=252 Identities=18% Similarity=0.233 Sum_probs=125.5
Q ss_pred CCccccCCCCCCCEEeccCccCCCCch----hhhcccccccEEeccCc---ccccccCCcccccCCCcccceeecccccc
Q 042568 116 HIPAELGSLIRLKQLSLSWNSLQGKIP----SQLGSLHQLEYLDLGNN---KLVGEIPIPIFCSNSSTSLQYIDLSNNSL 188 (983)
Q Consensus 116 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~L~~L~~L~Ls~N---~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l 188 (983)
.++..+..+++|++|+|++|.|++..+ ..|.++++|++|+|++| ++++.+|..+..+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l---------------- 86 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL---------------- 86 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH----------------
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH----------------
Confidence 466677777888888888888876533 34667788888888875 3444444433100
Q ss_pred cCCCCCcccccccccceeecccCcccc----ccchhhhccCCcceecccccccccccchhh---hcCC---------CCc
Q 042568 189 TGEIPLKNECELRNLRFLLLWSNRLVG----QVPQALANSSKLEWLDLESNMFSGELPSEI---ISKM---------PQL 252 (983)
Q Consensus 189 ~~~ip~~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l---------~~L 252 (983)
...+..+++|++|+|++|++++ .+|..+..+++|++|+|++|.+++..+..+ +..+ ++|
T Consensus 87 -----~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 87 -----LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp -----HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred -----HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC
Confidence 0112345666666666666655 355566666666666666666653222111 1122 555
Q ss_pred cEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccc-----cCCccccccccCeeEEEccCcccc----ccC
Q 042568 253 QFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGG-----MIPSIIGDLSTNLVQIHLDCNLIY----GKI 323 (983)
Q Consensus 253 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~~L~~L~L~~N~l~----~~~ 323 (983)
++|+|++|++... .+..+...+..+++|++|+|++|+++. ..|..+..+ ++|++|+|++|.++ +.+
T Consensus 162 ~~L~L~~n~l~~~----~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 162 RSIICGRNRLENG----SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp CEEECCSSCCTGG----GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHH
T ss_pred cEEECCCCCCCcH----HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHH
Confidence 5666655554311 111122334444555555555555541 112123222 23444444444443 233
Q ss_pred CCCCCCCCcccEEeccccccCCC----CCcccc--cCCCCcEEEeeCCcccC----CCCCCC-CCCCCCcEEEccCcccc
Q 042568 324 PPHISNLVNLTLLNLSSNLLNGT----IPHELC--LMSKLERVYLSNNSLSG----EIPSAF-GDIPHLGLLDLSKNKLS 392 (983)
Q Consensus 324 p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~--~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~ 392 (983)
|..+..+++|++|+|++|.+++. +|..+. .+++|++|+|++|.+++ .+|..+ .++++|+.|+|++|+++
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 44444445555555555554433 233331 24445555555554443 233333 33444444444444444
Q ss_pred C
Q 042568 393 G 393 (983)
Q Consensus 393 ~ 393 (983)
+
T Consensus 317 ~ 317 (386)
T 2ca6_A 317 E 317 (386)
T ss_dssp T
T ss_pred c
Confidence 3
No 343
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=9.3e-22 Score=208.70 Aligned_cols=180 Identities=21% Similarity=0.237 Sum_probs=102.8
Q ss_pred CCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEcc
Q 042568 356 KLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLS 435 (983)
Q Consensus 356 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls 435 (983)
..++++++++.++ .+|..+. ++|+.|+|++|++++..+..|.++++|+.|+|++|.+++..|..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666766666 3444333 456666666666666555556666666666666666665555555555566666666
Q ss_pred CccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCccccc
Q 042568 436 HNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGL 515 (983)
Q Consensus 436 ~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 515 (983)
+|++++..+..+..+++ |+.|+|++|+|++..+..|..+++|+.|+|++|+|++.
T Consensus 92 ~n~l~~~~~~~~~~l~~-------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQ-------------------------LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCCCCCTTTTTTCTT-------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccChhHhcccCC-------------------------CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 66555444444444444 44555555555533334445555555555666655554
Q ss_pred ccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccc
Q 042568 516 LPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGN 563 (983)
Q Consensus 516 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 563 (983)
.+..+..+++|+.|+|++|++++..|..|..+++|++|++++|++++.
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 444555566666666666666655555566666666666666666554
No 344
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=6.7e-22 Score=216.42 Aligned_cols=206 Identities=21% Similarity=0.347 Sum_probs=121.3
Q ss_pred EccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCcccc
Q 042568 313 HLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLS 392 (983)
Q Consensus 313 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 392 (983)
.+..+.+.+.+ .+..+++|++|++++|.++. +| .+..+++|++|+|++|.+.+..+ +..+++|+.|+|++|+++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence 34444444322 24457778888888888774 44 57777788888888887775444 777777777777777776
Q ss_pred CcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCcccc
Q 042568 393 GSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLEL 472 (983)
Q Consensus 393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~ 472 (983)
+. ..+..+++|+.|++++|.+++ ++. +..+++|+.|++++|++++..+ +..+++|+. |++++|++++..+ +
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~-L~l~~n~l~~~~~--l 169 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQY-LSIGNAQVSDLTP--L 169 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE-EECCSSCCCCCGG--G
T ss_pred Cc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccE-EEccCCcCCCChh--h
Confidence 43 246667777777777777764 332 6666677777777776664332 555555554 5555555554222 4
Q ss_pred ccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCcccc
Q 042568 473 SKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLF 537 (983)
Q Consensus 473 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 537 (983)
..+++|+.|+|++|++++ +|. +..+++|+.|+|++|++++..| +..+++|+.|++++|+++
T Consensus 170 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred cCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 555555555555555542 222 4445555555555555553332 444455555555555544
No 345
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=6.7e-24 Score=236.07 Aligned_cols=254 Identities=20% Similarity=0.245 Sum_probs=141.7
Q ss_pred CCccEEEccCCcccccCCcccccc-ccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCC-CCcccccCCCCcE
Q 042568 282 SNFQELELAGNNLGGMIPSIIGDL-STNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGT-IPHELCLMSKLER 359 (983)
Q Consensus 282 ~~L~~L~L~~n~l~~~~p~~~~~l-~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~ 359 (983)
..++.+++++|.+. +..+..+ ..+++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34677777777765 2333332 13566777777776655443 44566666666666666544 5555555666666
Q ss_pred EEeeCCcccCCCCCCCCCCCCCcEEEccCc-cccCc-CcccccCcccchhhcccCc-cCCCC-CcccccCCC-CCCEEEc
Q 042568 360 VYLSNNSLSGEIPSAFGDIPHLGLLDLSKN-KLSGS-IPDSFANLSQLRRLLLYGN-HLSGT-IPSSLGKCV-NLEILDL 434 (983)
Q Consensus 360 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~-~p~~l~~l~-~L~~L~L 434 (983)
|+|++|.+++..|..++.+++|+.|+|++| .+++. ++..+.++++|+.|++++| .+++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 666666655555555555555666666655 44431 3333444455555555555 44422 233344444 4444444
Q ss_pred cCccccCcCCccccCCCccceeccccCCCCC-CCCccccccccccccccccccc-cccCCCcccccccccceEEeCCCc-
Q 042568 435 SHNKISGIIPSDVAGLRSLKLYLNLSSNHLD-GPLPLELSKMDMVLAIDLSFNN-LSGSIPPQLGSCIALESLNLSGNS- 511 (983)
Q Consensus 435 s~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~- 511 (983)
++|.+ .++ +.+|..+..+++|+.|+|++|. +++..+..+..+++|+.|++++|.
T Consensus 203 ~~~~~-----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 203 SGYRK-----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp CSCGG-----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CCCcc-----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 44421 232 2344455566666666666666 555566666677777777777774
Q ss_pred ccccccccccCCCCccEEecCCccccCCcCccccCC-CCcceEeccCCccccccCC
Q 042568 512 LEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQAS-PTLKQLNFSFNKFSGNISN 566 (983)
Q Consensus 512 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l-~~L~~l~l~~N~l~~~~~~ 566 (983)
++......+..+++|+.|++++| ++. ..+..+ ..++.|++++|++++..|.
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence 22222224666777777777777 332 233333 2356666777777776654
No 346
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.6e-22 Score=237.32 Aligned_cols=208 Identities=25% Similarity=0.363 Sum_probs=155.1
Q ss_pred cCCCCCCCCCCc-----ceeeE-EECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCC
Q 042568 54 LESWNSTDVHVC-----NWSGV-KCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRL 127 (983)
Q Consensus 54 l~sw~~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (983)
+.+|.. +.++| .|.|+ .|.. ++++.|+|+++++.+ +|+.+. ++|++|+|++|.|+ .+| +.+++|
T Consensus 33 l~~W~~-~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L 102 (571)
T 3cvr_A 33 WDKWEK-QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASL 102 (571)
T ss_dssp HHHHHT-TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred HHHHhc-cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCC
Confidence 456654 34567 79999 7864 368999999999986 777663 88999999999998 777 567899
Q ss_pred CEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceee
Q 042568 128 KQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLL 207 (983)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~ 207 (983)
++|+|++|+|++ +|. +.+ +|++|+|++|++++ +|. .+++|++|+|++|.+++ +|. .+++|++|+
T Consensus 103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~------~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~ 166 (571)
T 3cvr_A 103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE------LPALLEYINADNNQLTM-LPE----LPTSLEVLS 166 (571)
T ss_dssp CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC------CCTTCCEEECCSSCCSC-CCC----CCTTCCEEE
T ss_pred CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC------cCccccEEeCCCCccCc-CCC----cCCCcCEEE
Confidence 999999999996 777 765 89999999999985 665 36889999999999885 664 568889999
Q ss_pred cccCccccccchhhhccCCcceecccccccccccchhhhcCCCCc-------cEEEccccccccCCCCCCCcccccccCC
Q 042568 208 LWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQL-------QFLYLSYNDFVSHDGNTNLEPFFASLAN 280 (983)
Q Consensus 208 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 280 (983)
|++|+|++ +|. |. ++|++|+|++|+|+ .+|. + .. +| ++|+|++|+|+. ++..+..
T Consensus 167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~-~~--~L~~~~~~L~~L~Ls~N~l~~---------lp~~l~~ 228 (571)
T 3cvr_A 167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V-PV--RNHHSEETEIFFRCRENRITH---------IPENILS 228 (571)
T ss_dssp CCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C-C----------CCEEEECCSSCCCC---------CCGGGGG
T ss_pred CCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H-HH--hhhcccccceEEecCCCccee---------cCHHHhc
Confidence 99998886 565 65 78888999988887 6776 3 22 45 677777766643 2234445
Q ss_pred CCCccEEEccCCcccccCCcccccc
Q 042568 281 SSNFQELELAGNNLGGMIPSIIGDL 305 (983)
Q Consensus 281 l~~L~~L~L~~n~l~~~~p~~~~~l 305 (983)
+++|++|+|++|.+++.+|..+..+
T Consensus 229 l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 229 LDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 6666666666666666655555543
No 347
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.4e-21 Score=213.92 Aligned_cols=190 Identities=23% Similarity=0.345 Sum_probs=113.1
Q ss_pred CeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEcc
Q 042568 308 NLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLS 387 (983)
Q Consensus 308 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 387 (983)
+|++|++++|.+.. +| .+..+++|++|++++|++++..+ +..+++|++|+|++|.+++. + .+..+++|+.|+|+
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECC
Confidence 56666666666653 33 45666666666666666664333 66666666666666666642 2 46666666666666
Q ss_pred CccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCC
Q 042568 388 KNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGP 467 (983)
Q Consensus 388 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~ 467 (983)
+|++++. + .+..+++|+.|++++|.+++. +. +..+++|+.|++++|++++..+ +..+++|+. |++++|++++.
T Consensus 116 ~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~-L~l~~n~l~~~ 188 (308)
T 1h6u_A 116 STQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT-LKADDNKISDI 188 (308)
T ss_dssp TSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE-EECCSSCCCCC
T ss_pred CCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCE-EECCCCccCcC
Confidence 6666643 2 266666666666666666633 22 5666666666666666664332 566666664 66666666643
Q ss_pred CccccccccccccccccccccccCCCcccccccccceEEeCCCcccc
Q 042568 468 LPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEG 514 (983)
Q Consensus 468 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 514 (983)
.+ +..+++|+.|+|++|++++.. .+..+++|+.|+|++|++++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 33 566666666666666666433 25666666666666666653
No 348
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=2e-21 Score=217.00 Aligned_cols=242 Identities=18% Similarity=0.216 Sum_probs=120.6
Q ss_pred cEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeC
Q 042568 285 QELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSN 364 (983)
Q Consensus 285 ~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 364 (983)
++++.++++++ .+|..+ ++++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~--------------- 72 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA--------------- 72 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT---------------
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh---------------
Confidence 45556666665 334332 23455555555555533333445555555555555554433332
Q ss_pred CcccCCCCCCCCCCCCCcE-EEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccC-ccccCc
Q 042568 365 NSLSGEIPSAFGDIPHLGL-LDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSH-NKISGI 442 (983)
Q Consensus 365 N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ 442 (983)
.+|.++++|.. ++++.|+++...|..|..+++|+.|++++|+++...+..+....++..|++.+ |++...
T Consensus 73 --------~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 73 --------DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp --------TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred --------hHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence 23444444332 33334444444444444444444444444444433333334444455555533 344433
Q ss_pred CCccccCCC-ccceeccccCCCCCCCCccccccccccccccccc-cccccCCC-cccccccccceEEeCCCccccccccc
Q 042568 443 IPSDVAGLR-SLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSF-NNLSGSIP-PQLGSCIALESLNLSGNSLEGLLPVS 519 (983)
Q Consensus 443 ~p~~~~~l~-~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~ 519 (983)
.+..|..+. .++ .|+|++|+|+. +|.......+|+.|++++ |.++ .+| ..|..+++|+.|+|++|+|+...+..
T Consensus 145 ~~~~f~~~~~~l~-~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~ 221 (350)
T 4ay9_X 145 ERNSFVGLSFESV-ILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG 221 (350)
T ss_dssp CTTSSTTSBSSCE-EEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS
T ss_pred cccchhhcchhhh-hhccccccccC-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh
Confidence 334444443 233 36666666653 333333344566677764 4444 454 35677777777777777777544444
Q ss_pred ccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCcc
Q 042568 520 VGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKF 560 (983)
Q Consensus 520 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l 560 (983)
+.+ |+.|.+.++.-...+| .+.++++|+.+++.++.-
T Consensus 222 ~~~---L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 222 LEN---LKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp CTT---CCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred hcc---chHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence 443 4444433333233666 367777787777765543
No 349
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.86 E-value=6.8e-22 Score=212.68 Aligned_cols=139 Identities=19% Similarity=0.243 Sum_probs=112.3
Q ss_pred HHHHhCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCc-----------------chhHHHHHHHHHHHhcCCC
Q 042568 662 LIEATGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTG-----------------EITGSFKRECQILKRIRHR 724 (983)
Q Consensus 662 l~~~~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~-----------------~~~~~~~~E~~~l~~l~h~ 724 (983)
+......|...+.||+|+||.||+|.+.+|+.||||.++..... .....+.+|++++++++
T Consensus 85 ~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-- 162 (282)
T 1zar_A 85 LVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-- 162 (282)
T ss_dssp HHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--
Confidence 33444556677999999999999999977999999998643211 12457899999999999
Q ss_pred CccceeeEEecCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEe
Q 042568 725 NLIRIITICSKPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILL 804 (983)
Q Consensus 725 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl 804 (983)
| +++.+++.. +..++||||+++|+|.+ +.. .....++.|+++||+|||+.+ |+||||||+|||+
T Consensus 163 ~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~----------~~~~~i~~qi~~~l~~lH~~g---iiHrDlkp~NILl 226 (282)
T 1zar_A 163 G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV----------ENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLV 226 (282)
T ss_dssp T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC----------SCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEE
T ss_pred C-CCcCeEEec-cceEEEEEecCCCcHHH-cch----------hhHHHHHHHHHHHHHHHHHCC---CEeCCCCHHHEEE
Confidence 4 666665543 55699999999999988 431 124579999999999999996 9999999999999
Q ss_pred CCCCCEEEccccccc
Q 042568 805 DEDLTALVADFGIAK 819 (983)
Q Consensus 805 ~~~~~~kl~Dfgla~ 819 (983)
+ ++.+||+|||+|+
T Consensus 227 ~-~~~vkl~DFG~a~ 240 (282)
T 1zar_A 227 S-EEGIWIIDFPQSV 240 (282)
T ss_dssp E-TTEEEECCCTTCE
T ss_pred E-CCcEEEEECCCCe
Confidence 9 9999999999986
No 350
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=5.9e-21 Score=213.13 Aligned_cols=199 Identities=20% Similarity=0.167 Sum_probs=129.5
Q ss_pred cEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCC-CCCCCC
Q 042568 253 QFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPP-HISNLV 331 (983)
Q Consensus 253 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~-~l~~l~ 331 (983)
++++.++++++.++ ..+ .+++++|+|++|+|+...+..|..+ ++|++|+|++|.+.+.+|. .|.+++
T Consensus 12 ~~v~C~~~~Lt~iP---------~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~Ls~N~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 12 RVFLCQESKVTEIP---------SDL--PRNAIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLP 79 (350)
T ss_dssp TEEEEESTTCCSCC---------TTC--CTTCSEEEEESCCCSEECTTSSTTC-TTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred CEEEecCCCCCccC---------cCc--CCCCCEEEccCCcCCCcCHHHHcCC-CCCCEEECcCCCCCCccChhHhhcch
Confidence 67888888877643 223 2589999999999996656677777 5899999999999776665 578888
Q ss_pred cccE-EeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccC-ccccCcCcccccCcc-cchhh
Q 042568 332 NLTL-LNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSK-NKLSGSIPDSFANLS-QLRRL 408 (983)
Q Consensus 332 ~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~-~L~~L 408 (983)
++++ +.++.|+++...|..|..+++|++|++++|.+....+..+....++..|++.+ |++....+..|..+. .++.|
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 8775 66677889877778888888888888888888877776777777777888765 456544444454443 34455
Q ss_pred cccCccCCCCCcccccCCCCCCEEEccC-ccccCcCCccccCCCccceeccccCCCCC
Q 042568 409 LLYGNHLSGTIPSSLGKCVNLEILDLSH-NKISGIIPSDVAGLRSLKLYLNLSSNHLD 465 (983)
Q Consensus 409 ~l~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~~L~l~~N~l~ 465 (983)
+|++|+|+ .+|.......+|+.|++++ |.++...+..|..+++|+. |++++|+|+
T Consensus 160 ~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~-LdLs~N~l~ 215 (350)
T 4ay9_X 160 WLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI-LDISRTRIH 215 (350)
T ss_dssp ECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSE-EECTTSCCC
T ss_pred cccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccch-hhcCCCCcC
Confidence 55555554 2333333334444444442 3333222223344444443 444444444
No 351
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=3.2e-21 Score=226.16 Aligned_cols=188 Identities=23% Similarity=0.345 Sum_probs=107.8
Q ss_pred CeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEcc
Q 042568 308 NLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLS 387 (983)
Q Consensus 308 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 387 (983)
+|+.|+|++|.+++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|+|++|.|++ +|. +.. +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 57777777777765 565553 56777777777776 455 345666666666666665 444 443 66666666
Q ss_pred CccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCC
Q 042568 388 KNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGP 467 (983)
Q Consensus 388 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~ 467 (983)
+|+|++ +|. .+++|+.|+|++|.|++ +|. .+++|+.|+|++|+|++ +|. +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l-------------------- 178 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L-------------------- 178 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C--------------------
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h--------------------
Confidence 666664 333 34555555555555553 333 34455555555555553 333 3
Q ss_pred CccccccccccccccccccccccCCCccccccccc-------ceEEeCCCcccccccccccCCCCccEEecCCccccCCc
Q 042568 468 LPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIAL-------ESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEI 540 (983)
Q Consensus 468 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 540 (983)
. ++|+.|+|++|+|+ .+|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+
T Consensus 179 -----~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 179 -----P--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp -----C--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred -----h--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 2 44445555555554 4444 332 44 66666666666 35666666666666666666666666
Q ss_pred CccccCCC
Q 042568 541 PQSFQASP 548 (983)
Q Consensus 541 p~~~~~l~ 548 (983)
|..|..++
T Consensus 247 p~~l~~l~ 254 (571)
T 3cvr_A 247 RESLSQQT 254 (571)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 66665543
No 352
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2e-20 Score=192.35 Aligned_cols=160 Identities=26% Similarity=0.304 Sum_probs=76.1
Q ss_pred cccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhccc
Q 042568 332 NLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLY 411 (983)
Q Consensus 332 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 411 (983)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444444444444444444444444445555555555555544444444444455555555
Q ss_pred CccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccC
Q 042568 412 GNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGS 491 (983)
Q Consensus 412 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 491 (983)
+|.+++..+..|..+++|+.|++++|++++..+..+..+++|+. |++++|.+.+. ++.|++|+++.|+++|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~-L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY-IWLHDNPWDCT-------CPGIRYLSEWINKHSGV 180 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE-EECCSCCBCCC-------TTTTHHHHHHHHHCTTT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE-EEecCCCeecC-------CCCHHHHHHHHHhCCce
Confidence 55554433334445555555555555555444434444444543 55555544322 22345555555555555
Q ss_pred CCcccccc
Q 042568 492 IPPQLGSC 499 (983)
Q Consensus 492 ~p~~~~~l 499 (983)
+|..++.+
T Consensus 181 ip~~~~~l 188 (208)
T 2o6s_A 181 VRNSAGSV 188 (208)
T ss_dssp BBCTTSSB
T ss_pred eeccCccc
Confidence 55544443
No 353
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.2e-20 Score=194.02 Aligned_cols=181 Identities=20% Similarity=0.210 Sum_probs=103.7
Q ss_pred cEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCc
Q 042568 334 TLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGN 413 (983)
Q Consensus 334 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 413 (983)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555555555 334332 346677777777776655556666666777777666666555555555666666666666
Q ss_pred cCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCC
Q 042568 414 HLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIP 493 (983)
Q Consensus 414 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 493 (983)
.+++..+..|..+++|++|++++|++++..+..+ ..+++|+.|+|++|++++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------------------------~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF-------------------------DKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-------------------------TTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh-------------------------ccCCcCCEEECCCCccceeCH
Confidence 6654444445555555555555555554444444 444455555555555554444
Q ss_pred cccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCC
Q 042568 494 PQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPT 549 (983)
Q Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 549 (983)
..|..+++|+.|++++|.+.+ .+++|+.|+++.|+++|.+|.+++.++.
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 445556666666666665553 2345666666666666666666665543
No 354
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=5.9e-21 Score=232.61 Aligned_cols=232 Identities=21% Similarity=0.194 Sum_probs=82.0
Q ss_pred ccHHhHHHHHHHHHhccCCCccccCCCCCCCCCCcceeeEEECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcC
Q 042568 31 QIIRDRASLVTFMSSIISAPEHALESWNSTDVHVCNWSGVKCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSK 110 (983)
Q Consensus 31 ~~~~~~~~ll~~k~~~~~~~~~~l~sw~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~ 110 (983)
....++++|+++..+...+....-..|.......+.|.+++++. .+++.|+|.++++.. ++.. .|+.++|+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~ 200 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQA-----LLQHKKLSQ 200 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhh-----HhhcCccCc
Confidence 34568999999998875443344457866556678899998875 569999999988875 3332 244455555
Q ss_pred CcCCC---------CCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCccccee
Q 042568 111 NFFQG---------HIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYI 181 (983)
Q Consensus 111 n~l~~---------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L 181 (983)
|.|.+ ..|..+..+.+|+.|+|++|.|. .+|..+.++++|++|+|++|+|+ .+|..+
T Consensus 201 ~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~------------ 266 (727)
T 4b8c_D 201 YSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI------------ 266 (727)
T ss_dssp ---------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG------------
T ss_pred ccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh------------
Confidence 55442 23444455555555555555554 44444445555555555555554 444333
Q ss_pred ecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccc
Q 042568 182 DLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYND 261 (983)
Q Consensus 182 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 261 (983)
..+++|++|+|++|+|+ .+|..|+++++|++|+|++|.|+ .+|..
T Consensus 267 ----------------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~----------------- 311 (727)
T 4b8c_D 267 ----------------KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE----------------- 311 (727)
T ss_dssp ----------------GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS-----------------
T ss_pred ----------------hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh-----------------
Confidence 34444555555555544 34445555555555555555553 34332
Q ss_pred cccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEecccc
Q 042568 262 FVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSN 341 (983)
Q Consensus 262 l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 341 (983)
+.++++|++|+|++|.+++.+|..+......+..++|++|.+++.+|.. |+.|++++|
T Consensus 312 ----------------~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 312 ----------------FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp ----------------TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred ----------------hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 2333444444444444455555554443222334556666666665543 344555554
No 355
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=8.3e-20 Score=189.12 Aligned_cols=155 Identities=20% Similarity=0.188 Sum_probs=102.7
Q ss_pred hhcccCccCCCCCcccccCCCCCCEEEccCccccCcCC-ccccCCCccceeccccCCCCCCCCccccccccccccccccc
Q 042568 407 RLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIP-SDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSF 485 (983)
Q Consensus 407 ~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~ 485 (983)
.+++++|.++ .+|..+. +.++.|+|++|+|++..| ..|..+++|+. |+|++|+|++..+..|.++++|++|+|++
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~-L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRK-INFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCE-EECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCE-EECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4444444444 3343332 234566666666665433 33556666664 66666666655555666667777777777
Q ss_pred cccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccC
Q 042568 486 NNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNIS 565 (983)
Q Consensus 486 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 565 (983)
|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|++|++++|++++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77776666667777777777777777777777777777777788888887777667777777888888888888776554
No 356
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=6.2e-19 Score=183.81 Aligned_cols=157 Identities=29% Similarity=0.343 Sum_probs=103.3
Q ss_pred CCCcceeeEEECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCc
Q 042568 62 VHVCNWSGVKCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKI 141 (983)
Q Consensus 62 ~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 141 (983)
.+.|+|.+|.|+.. ++. .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|+|+...
T Consensus 16 ~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 80 (229)
T 3e6j_A 16 QCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80 (229)
T ss_dssp TCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC
Confidence 56899999999753 222 4555443 78999999999999888888999999999999999998666
Q ss_pred hhhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhh
Q 042568 142 PSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQAL 221 (983)
Q Consensus 142 p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l 221 (983)
+..|+.+++|++|+|++|+++ .+|...+ ..+++|++|+|++|+++ .+|.. +..+++|++|+|++|+|++..+..|
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~--~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLT-VLPSAVF--DRLVHLKELFMCCNKLT-ELPRG-IERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTT--TTCTTCCEEECCSSCCC-SCCTT-GGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred hhhcccCCCcCEEECCCCcCC-ccChhHh--CcchhhCeEeccCCccc-ccCcc-cccCCCCCEEECCCCcCCccCHHHH
Confidence 667888999999999999888 3443332 24555555555555555 33322 2344455555555555544444444
Q ss_pred hccCCcceecccccccc
Q 042568 222 ANSSKLEWLDLESNMFS 238 (983)
Q Consensus 222 ~~l~~L~~L~Ls~N~l~ 238 (983)
..+++|++|+|++|.+.
T Consensus 156 ~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECTTSCBC
T ss_pred hCCCCCCEEEeeCCCcc
Confidence 44444445555444444
No 357
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.9e-19 Score=186.34 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=110.2
Q ss_pred hhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCcccccccccccccccccc
Q 042568 407 RLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFN 486 (983)
Q Consensus 407 ~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N 486 (983)
.+++++|.++ .+|..+. ++|+.|+|++|+|++..+..|..+++|+. |+|++|++++..|..|.++++|++|+|++|
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~-L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRR-IDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCE-EECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCE-EECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4455555555 4444333 45677777777777666666667777774 777777777666777777777777777777
Q ss_pred ccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCcccccc
Q 042568 487 NLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNI 564 (983)
Q Consensus 487 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 564 (983)
+|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 777544455677788888888888888777778888888888888888888766677888888888888888887643
No 358
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.7e-19 Score=212.42 Aligned_cols=190 Identities=26% Similarity=0.376 Sum_probs=110.3
Q ss_pred CccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEe
Q 042568 283 NFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYL 362 (983)
Q Consensus 283 ~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 362 (983)
.+..+.++.+.+.+.++ +..+ .+|+.|++++|.+.. +| .+..+++|+.|+|++|++++..| +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHH-TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hhcC-CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34445556665554333 2223 356667777776653 22 46666777777777777665433 666666777777
Q ss_pred eCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCc
Q 042568 363 SNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGI 442 (983)
Q Consensus 363 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 442 (983)
++|.+.+ +| .+..+++|+.|+|++|++++. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|+|++.
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 7776664 22 566666666666666666642 3456666666666666666643 4456666666666666666654
Q ss_pred CCccccCCCccceeccccCCCCCCCCcccccccccccccccccccccc
Q 042568 443 IPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSG 490 (983)
Q Consensus 443 ~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 490 (983)
.| +..+++|+. |+|++|+|++. ..+..+++|+.|+|++|++++
T Consensus 169 ~~--l~~l~~L~~-L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 VP--LAGLTKLQN-LYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GG--GTTCTTCCE-EECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred hh--hccCCCCCE-EECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 44 555555554 66666655542 235555555555555555553
No 359
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=4.7e-19 Score=210.32 Aligned_cols=197 Identities=23% Similarity=0.331 Sum_probs=135.7
Q ss_pred cccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccccccccCCCCCCCccccccc
Q 042568 199 ELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSYNDFVSHDGNTNLEPFFASL 278 (983)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 278 (983)
.+.++..+.++.+.+.+..+ +..+.+|+.|+|++|.++ .++. +..+++|++|+|++|++.... .+
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~----------~l 83 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK----------PL 83 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCG----------GG
T ss_pred HHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCCh----------hh
Confidence 45567777777777775544 567788888888888876 4442 455666666666666553311 13
Q ss_pred CCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCc
Q 042568 279 ANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLE 358 (983)
Q Consensus 279 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 358 (983)
..++ +|+.|+|++|.+.+ ++.+..+++|+.|+|++|++++. ..+..+++|+
T Consensus 84 ~~l~-------------------------~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 134 (605)
T 1m9s_A 84 TNLK-------------------------NLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 134 (605)
T ss_dssp GGCT-------------------------TCCEEECCSSCCCC--CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCS
T ss_pred ccCC-------------------------CCCEEECcCCCCCC--ChhhccCCCCCEEEecCCCCCCC--ccccCCCccC
Confidence 3333 45555555555543 23567777888888888888753 3577788888
Q ss_pred EEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCcc
Q 042568 359 RVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNK 438 (983)
Q Consensus 359 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 438 (983)
.|+|++|.+++. ..+..+++|+.|+|++|+|++..| +..+++|+.|+|++|.|++ +| .+..+++|+.|+|++|+
T Consensus 135 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEE
T ss_pred EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCc
Confidence 888888888764 467788888888888888886655 7788888888888888875 33 57888888888888888
Q ss_pred ccCcCCc
Q 042568 439 ISGIIPS 445 (983)
Q Consensus 439 l~~~~p~ 445 (983)
+.+....
T Consensus 209 l~~~p~~ 215 (605)
T 1m9s_A 209 CLNKPIN 215 (605)
T ss_dssp EECCCCC
T ss_pred CcCCccc
Confidence 8754333
No 360
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.7e-19 Score=195.52 Aligned_cols=170 Identities=25% Similarity=0.388 Sum_probs=77.1
Q ss_pred CCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhh
Q 042568 329 NLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRL 408 (983)
Q Consensus 329 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 408 (983)
.+++|+.|++++|.++.. + .+..+++|++|+|++|.+++..+ +..+++|+.|+|++|++++
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--------------- 104 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--------------- 104 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---------------
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC---------------
Confidence 445555555555555422 2 24444555555555555543322 4444444444444444442
Q ss_pred cccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCcccccccccccccccccccc
Q 042568 409 LLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNL 488 (983)
Q Consensus 409 ~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 488 (983)
+| .+..+++|+.|++++|++++. ..+..+++|+. |++++|++++. ..+..+++|+.|+|++|++
T Consensus 105 ----------~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~-L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 105 ----------LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLES-LYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp ----------GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCE-EECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred ----------Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCE-EEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 11 244445555555555555432 22333444442 44444444332 2344444444444444444
Q ss_pred ccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCcccc
Q 042568 489 SGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLF 537 (983)
Q Consensus 489 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 537 (983)
++..| +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 43222 4445555555555555543 22 2444555555555555544
No 361
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=1.6e-21 Score=230.23 Aligned_cols=204 Identities=24% Similarity=0.232 Sum_probs=110.7
Q ss_pred CCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchh
Q 042568 328 SNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRR 407 (983)
Q Consensus 328 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 407 (983)
...++|+.|+|++|+++ .+|..++.+++|+.|++++|......|. .+..+.+.+..|..++++++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhccc
Confidence 44566666777777666 5566666666666666655431100000 00111234455666666777777
Q ss_pred hc-ccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCcccccccccccccccccc
Q 042568 408 LL-LYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFN 486 (983)
Q Consensus 408 L~-l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N 486 (983)
|+ ++.|.+. .|+.+.+++|.++...+. .|+. |+|++|.|++ +|. ++.+++|+.|+|++|
T Consensus 414 L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~~------~L~~-L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 414 VDPMRAAYLD-----------DLRSKFLLENSVLKMEYA------DVRV-LHLAHKDLTV-LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HCGGGHHHHH-----------HHHHHHHHHHHHHHHHHT------TCSE-EECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred Ccchhhcccc-----------hhhhhhhhcccccccCcc------CceE-EEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence 66 5555432 233444455554432111 2343 5555555554 343 555555666666666
Q ss_pred ccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCc-CccccCCCCcceEeccCCccccccC
Q 042568 487 NLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEI-PQSFQASPTLKQLNFSFNKFSGNIS 565 (983)
Q Consensus 487 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~~ 565 (983)
+|+ .+|..|+.+++|+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.+ |..|..+++|+.|+|++|++++.+|
T Consensus 474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 474 RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 665 555566666666666666666664 44 5556666666666666665554 5566666666666666666665555
Q ss_pred C
Q 042568 566 N 566 (983)
Q Consensus 566 ~ 566 (983)
.
T Consensus 551 ~ 551 (567)
T 1dce_A 551 I 551 (567)
T ss_dssp C
T ss_pred H
Confidence 3
No 362
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=5.6e-19 Score=197.93 Aligned_cols=176 Identities=26% Similarity=0.279 Sum_probs=92.6
Q ss_pred cEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCccccc-CcccchhhcccCccCCCCCcccccCCCCCCEEEccC
Q 042568 358 ERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFA-NLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSH 436 (983)
Q Consensus 358 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~ 436 (983)
+.+++++|.++. +|..+. +.++.|+|++|+|++..+..|. ++++|+.|+|++|+|++..+..|..+++|+.|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666663 444332 2355666666666554444444 455555555555555544444444455555555555
Q ss_pred ccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccc
Q 042568 437 NKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLL 516 (983)
Q Consensus 437 N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 516 (983)
|+|++. .+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..
T Consensus 98 N~l~~~-------------------------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 98 NHLHTL-------------------------DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp SCCCEE-------------------------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CcCCcC-------------------------CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 544433 3334444444555555555555444555555566666666666665433
Q ss_pred cccc---cCCCCccEEecCCccccCCcCccccCCCCc--ceEeccCCccc
Q 042568 517 PVSV---GQLPYLKQFDVSSNRLFGEIPQSFQASPTL--KQLNFSFNKFS 561 (983)
Q Consensus 517 p~~~---~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L--~~l~l~~N~l~ 561 (983)
+..+ ..+++|+.|+|++|+|++..+..|..++.+ +.|+|++|++.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 3333 456666777777776664444556666553 55666655554
No 363
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=178.91 Aligned_cols=153 Identities=23% Similarity=0.285 Sum_probs=91.7
Q ss_pred cEEEccCCcccccCCccccccccCeeEEEccCccccccCC-CCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEee
Q 042568 285 QELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIP-PHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLS 363 (983)
Q Consensus 285 ~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 363 (983)
+++++++|+++. +|..+. ..+++|+|++|.+++..| ..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~-iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCccc-CccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 356666666653 444332 345566666666665543 235566666666666666665555556666666666666
Q ss_pred CCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccC
Q 042568 364 NNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISG 441 (983)
Q Consensus 364 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 441 (983)
+|.+++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 666665555556666666666666666665556666666666666666666665555556666666666666666554
No 364
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.1e-18 Score=189.13 Aligned_cols=168 Identities=29% Similarity=0.392 Sum_probs=130.9
Q ss_pred cCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEc
Q 042568 307 TNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDL 386 (983)
Q Consensus 307 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 386 (983)
++|+.|++++|.+.+. + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++. | .+..+++|+.|+|
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence 5799999999999854 3 58899999999999999997654 89999999999999999863 3 4899999999999
Q ss_pred cCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCC
Q 042568 387 SKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDG 466 (983)
Q Consensus 387 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~ 466 (983)
++|++++. +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+. |++++|.+++
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~-L~L~~N~i~~ 192 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN-LYLSKNHISD 192 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE-EECCSSCCCB
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE-EECCCCcCCC
Confidence 99999864 4577888888888888888754 567788888888888888876544 666677764 7777776664
Q ss_pred CCccccccccccccccccccccc
Q 042568 467 PLPLELSKMDMVLAIDLSFNNLS 489 (983)
Q Consensus 467 ~~p~~~~~l~~L~~L~Ls~N~l~ 489 (983)
. | .+..+++|+.|++++|+++
T Consensus 193 l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 L-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp C-G-GGTTCTTCSEEEEEEEEEE
T ss_pred C-h-hhccCCCCCEEECcCCccc
Confidence 2 2 2555555555555555555
No 365
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=1.1e-20 Score=223.05 Aligned_cols=202 Identities=20% Similarity=0.168 Sum_probs=120.8
Q ss_pred cccccceeecccCccccccchhhhccCCcceecccccc-------------cccccchhhhcCCCCccEEE-cccccccc
Q 042568 199 ELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNM-------------FSGELPSEIISKMPQLQFLY-LSYNDFVS 264 (983)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-------------l~~~~~~~~~~~l~~L~~L~-Ls~N~l~~ 264 (983)
..++|+.|+|++|+++ .+|..++++++|+.|++++|. +.+. ++..+..+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhcccc-
Confidence 5677777788888776 678888888888888887664 3322 234455666666666 5555432
Q ss_pred CCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccC
Q 042568 265 HDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLN 344 (983)
Q Consensus 265 ~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 344 (983)
+|+.+.+++|.+++..+ ..|+.|+|++|.|++ +|. ++.+++|+.|+|++|+|+
T Consensus 424 ------------------~L~~l~l~~n~i~~l~~-------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 424 ------------------DLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp ------------------HHHHHHHHHHHHHHHHH-------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred ------------------hhhhhhhhcccccccCc-------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence 23444455555543211 135666666666664 454 666666666666666666
Q ss_pred CCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcC-cccccCcccchhhcccCccCCCCCcc--
Q 042568 345 GTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSI-PDSFANLSQLRRLLLYGNHLSGTIPS-- 421 (983)
Q Consensus 345 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~p~-- 421 (983)
.+|..++.+++|+.|+|++|.|++ +| .++.+++|+.|+|++|+|++.. |..|+.+++|+.|+|++|.+++..|.
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 556666666666666666666664 44 5666666666666666666554 55666666666666666666543332
Q ss_pred -cccCCCCCCEEE
Q 042568 422 -SLGKCVNLEILD 433 (983)
Q Consensus 422 -~l~~l~~L~~L~ 433 (983)
.+..+++|+.|+
T Consensus 554 ~l~~~lp~L~~L~ 566 (567)
T 1dce_A 554 RLAEMLPSVSSIL 566 (567)
T ss_dssp HHHHHCTTCSEEE
T ss_pred HHHHHCcccCccC
Confidence 122355555554
No 366
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=3.3e-18 Score=177.01 Aligned_cols=153 Identities=24% Similarity=0.315 Sum_probs=110.0
Q ss_pred cEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeC
Q 042568 285 QELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSN 364 (983)
Q Consensus 285 ~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 364 (983)
+.+++++++++ .+|..+. .+++.|+|++|.|++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45677777776 3454332 4677777777777766666777777777777777777776677777777777777777
Q ss_pred CcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccC
Q 042568 365 NSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISG 441 (983)
Q Consensus 365 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 441 (983)
|.|+...+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 77776666667777777777777777777777777777777777777777776666667777777777777777653
No 367
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.1e-18 Score=195.68 Aligned_cols=129 Identities=29% Similarity=0.326 Sum_probs=77.2
Q ss_pred eEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccc-cCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccC
Q 042568 310 VQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELC-LMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSK 388 (983)
Q Consensus 310 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 388 (983)
+.+++++|.++ .+|..+. ..++.|+|++|+|++..+..+. .+++|++|+|++|.|++..+..|..+++|+.|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45677777666 3555443 3466666666666655555555 666666666666666665556666666666666666
Q ss_pred ccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccC
Q 042568 389 NKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISG 441 (983)
Q Consensus 389 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 441 (983)
|+|++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 66665555555555555555555555555445555555555555555555553
No 368
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=3.7e-18 Score=177.93 Aligned_cols=153 Identities=22% Similarity=0.257 Sum_probs=91.4
Q ss_pred hcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccc
Q 042568 408 LLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNN 487 (983)
Q Consensus 408 L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 487 (983)
++.+++.++ .+|..+. ++|++|+|++|++++..|..+..+++|+. |+|++|+|++..+..|..+++|+.|+|++|+
T Consensus 24 v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~-L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 24 VDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKE-LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcE-EECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 444444443 3333222 45555555555555555555555555554 5555555554444455666666666666666
Q ss_pred cccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccC
Q 042568 488 LSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNIS 565 (983)
Q Consensus 488 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 565 (983)
|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+..+
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 66544555566666677777777666 556666666777777777777765555566667777777777777665544
No 369
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=2.1e-19 Score=218.89 Aligned_cols=183 Identities=23% Similarity=0.280 Sum_probs=76.0
Q ss_pred cCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccC
Q 042568 322 KIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFAN 401 (983)
Q Consensus 322 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 401 (983)
..|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|+++++|+.|+|++|+|+ .+|..|++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34455555666666666666665 44544555555555555555555 45555555555555555555555 44555555
Q ss_pred cccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccc
Q 042568 402 LSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAI 481 (983)
Q Consensus 402 l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L 481 (983)
+++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|+|++.+|..+..+... +..|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~------------------------~~~l 346 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT------------------------GLIF 346 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH------------------------HHHH
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh------------------------hhHH
Confidence 555555555555554 445555555555555555555555555444333211 1224
Q ss_pred cccccccccCCCcccccccccceEEeCCC--------cccccccccccCCCCccEEecCCccccC
Q 042568 482 DLSFNNLSGSIPPQLGSCIALESLNLSGN--------SLEGLLPVSVGQLPYLKQFDVSSNRLFG 538 (983)
Q Consensus 482 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 538 (983)
+|++|.++|.+|.. |+.|++++| .|.+..+..+..+..+....+++|-+.+
T Consensus 347 ~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 347 YLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp HHHHCCCCCCCCCC-----------------------------------------------CCCG
T ss_pred hhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 45555555444432 223334433 3444455555666777777888887654
No 370
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=5.9e-18 Score=171.15 Aligned_cols=109 Identities=23% Similarity=0.319 Sum_probs=56.9
Q ss_pred ccccCCCCCCCCcc-ccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCcc
Q 042568 457 LNLSSNHLDGPLPL-ELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNR 535 (983)
Q Consensus 457 L~l~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~ 535 (983)
|++++|+|++..+. .|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+
T Consensus 34 L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp EECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 44444444433332 24445555555555555554445555555555555555555555555555555555555555555
Q ss_pred ccCCcCccccCCCCcceEeccCCccccccC
Q 042568 536 LFGEIPQSFQASPTLKQLNFSFNKFSGNIS 565 (983)
Q Consensus 536 l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 565 (983)
+++.+|..|..+++|++|++++|++++..+
T Consensus 114 l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 555555555555555555555555554443
No 371
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.8e-18 Score=191.33 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=43.9
Q ss_pred CCCccccc--------ccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEccc
Q 042568 192 IPLKNECE--------LRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYLSY 259 (983)
Q Consensus 192 ip~~~~~~--------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 259 (983)
||...|.+ +++|+.|+|.+ .++.+.+.+|.++++|+.|++++|.++ .++...|..+.++..+.++.
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTC
T ss_pred cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcc
Confidence 44555556 77777777777 666666667777777777777777776 66666666666666665554
No 372
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.72 E-value=4.5e-18 Score=180.65 Aligned_cols=137 Identities=22% Similarity=0.264 Sum_probs=104.8
Q ss_pred CCCCCccccCCcEeEEEEEE-CCCcE--EEEEEeecccCc-----------------------chhHHHHHHHHHHHhcC
Q 042568 669 FCPSSLIGSGRFGHVYKGVL-QDNTR--IAVKVLDLTTTG-----------------------EITGSFKRECQILKRIR 722 (983)
Q Consensus 669 f~~~~~iG~G~~g~Vy~~~~-~~~~~--vAvK~~~~~~~~-----------------------~~~~~~~~E~~~l~~l~ 722 (983)
|.+.+.||+|+||.||+|.. .+|+. ||||+++..... .....+.+|++++++++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999997 67888 999987543211 01236889999999999
Q ss_pred CCCc--cceeeEEecCCceeEEEecccC-c----ccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHh-ccCCCCeEe
Q 042568 723 HRNL--IRIITICSKPDFKALVLPLMSN-G----SLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLH-HHSPIKVVH 794 (983)
Q Consensus 723 h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH-~~~~~~ivH 794 (983)
|+++ ..++++ ...++||||+.+ | +|.+.... .++..+..++.|+++|+.||| +.+ |+|
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-------~~~~~~~~i~~qi~~~l~~lH~~~g---ivH 194 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-------LKELDVEGIFNDVVENVKRLYQEAE---LVH 194 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-------GGGSCHHHHHHHHHHHHHHHHHTSC---EEC
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-------cChHHHHHHHHHHHHHHHHHHHHCC---EEe
Confidence 8864 344432 356899999942 4 44433221 223457889999999999999 885 999
Q ss_pred ecCCCCCeEeCCCCCEEEccccccccc
Q 042568 795 CDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 795 ~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
|||||+|||++. .++|+|||+|...
T Consensus 195 rDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 195 ADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp SSCSTTSEEESS--SEEECCCTTCEET
T ss_pred CCCCHHHEEEcC--cEEEEECcccccC
Confidence 999999999998 9999999999754
No 373
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=2.2e-18 Score=183.56 Aligned_cols=166 Identities=25% Similarity=0.339 Sum_probs=76.8
Q ss_pred CeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEcc
Q 042568 308 NLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLS 387 (983)
Q Consensus 308 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 387 (983)
++..++++.|.+++.. .+..+++|++|++++|+++ .++ .+..+++|++|+|++|.+++..+ +..+++|+.|+|+
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3445555555555322 3455555666666666555 233 45555555555555555554333 5555555555555
Q ss_pred CccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCC
Q 042568 388 KNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGP 467 (983)
Q Consensus 388 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~ 467 (983)
+|++++. |. +.. ++|+.|++++|++++ ++ .+..+++|+.|++++|++++. + .+..+++|+. |++++|++++.
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~-L~L~~N~i~~~ 165 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEV-LDLHGNEITNT 165 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCE-EECTTSCCCBC
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCE-EECCCCcCcch
Confidence 5555532 21 111 444444444444442 22 244444444444444444432 1 2333444442 44444444332
Q ss_pred Cccccccccccccccccccccc
Q 042568 468 LPLELSKMDMVLAIDLSFNNLS 489 (983)
Q Consensus 468 ~p~~~~~l~~L~~L~Ls~N~l~ 489 (983)
..+..+++|+.|++++|.++
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCccc
Confidence 23333333333333333333
No 374
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=5.2e-18 Score=180.71 Aligned_cols=169 Identities=16% Similarity=0.231 Sum_probs=88.0
Q ss_pred CCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEc
Q 042568 355 SKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDL 434 (983)
Q Consensus 355 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~L 434 (983)
.++..+++++|.+++.. .+..+++|+.|++++|+++. ++ .+..+++|+.|++++|++++. +. +..+++|+.|+|
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEEC
Confidence 33444455555555322 34445555555555555542 22 344455555555555555432 22 444555555555
Q ss_pred cCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccc
Q 042568 435 SHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEG 514 (983)
Q Consensus 435 s~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 514 (983)
++|++++. | .. .. .+|+.|+|++|++++ +| .+..+++|+.|+|++|++++
T Consensus 93 ~~N~l~~l-~-------------------------~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 93 NRNRLKNL-N-------------------------GI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CSSCCSCC-T-------------------------TC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB
T ss_pred CCCccCCc-C-------------------------cc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC
Confidence 55554432 2 11 11 455555555555553 22 35566666666666666664
Q ss_pred cccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccc
Q 042568 515 LLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGN 563 (983)
Q Consensus 515 ~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 563 (983)
. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 3 2 455666666666666666644 4566666666666666666554
No 375
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.6e-17 Score=168.94 Aligned_cols=151 Identities=17% Similarity=0.254 Sum_probs=80.4
Q ss_pred cccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccc
Q 042568 402 LSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAI 481 (983)
Q Consensus 402 l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L 481 (983)
+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|+. |++++|++++..|..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLER-LRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCE-EEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCE-EEeECCccCcccChhhcCCCCCCEE
Confidence 334444444444443 233 3444444444444444333 1123444444443 5555555544444555555555566
Q ss_pred cccccccccCCCcccccccccceEEeCCCc-ccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCcc
Q 042568 482 DLSFNNLSGSIPPQLGSCIALESLNLSGNS-LEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKF 560 (983)
Q Consensus 482 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l 560 (983)
+|++|++++..|..++.+++|+.|++++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 666666655556666666666666666666 44 344 46666677777777777663 33 566677777777777766
Q ss_pred c
Q 042568 561 S 561 (983)
Q Consensus 561 ~ 561 (983)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 376
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=7.9e-18 Score=186.07 Aligned_cols=298 Identities=17% Similarity=0.179 Sum_probs=172.2
Q ss_pred ccccccccc--CCCCcEEeCcCCcCCCCCccccCC-CCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCC
Q 042568 91 GTISPALAN--LSSLIVLDLSKNFFQGHIPAELGS-LIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPI 167 (983)
Q Consensus 91 g~~~~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~ 167 (983)
|+++..+.. +.+|+.|.++++ +.+.--..+.. +++|+.|||++|+|. .....-+.++.+..+++..|. +|.
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~~~----I~~ 86 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMANF----VPA 86 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECTTE----ECT
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecCccccccccccccccccc----cCH
Confidence 444444443 778888988864 22111112333 788999999999998 111112233345666666663 444
Q ss_pred cccccCC--------CcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccc-
Q 042568 168 PIFCSNS--------STSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFS- 238 (983)
Q Consensus 168 ~~~~~~~--------l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~- 238 (983)
..| .. +++|+.|+|.+ .++ .|+...|..+++|+.|++++|.+..+.+.+|.++.++.++.+..+...
T Consensus 87 ~aF--~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~ 162 (329)
T 3sb4_A 87 YAF--SNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR 162 (329)
T ss_dssp TTT--EEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred HHh--cccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence 444 45 89999999999 776 788889999999999999999998888899999888888887764321
Q ss_pred --cccchhhhcCCCCcc-EEEccccccccCCCCCCCcc-cccccCCCCCccEEEccCCcccccCCccccccccCeeEEEc
Q 042568 239 --GELPSEIISKMPQLQ-FLYLSYNDFVSHDGNTNLEP-FFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHL 314 (983)
Q Consensus 239 --~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L 314 (983)
..+....|..+..|+ .+.+....- +.. ++..-....+++.+.+.++-.. .....+.
T Consensus 163 ~~~~i~~~~f~~~~~L~~~i~~~~~~~--------l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~----------- 222 (329)
T 3sb4_A 163 FKNRWEHFAFIEGEPLETTIQVGAMGK--------LEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIR----------- 222 (329)
T ss_dssp TSTTTTTSCEEESCCCEEEEEECTTCC--------HHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHH-----------
T ss_pred ccccccccccccccccceeEEecCCCc--------HHHHHhhcccCccccceEEEeeeecH-HHHHHHH-----------
Confidence 122333344455555 333332210 000 0000011223333333322110 0000000
Q ss_pred cCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCc-EEEccCccccC
Q 042568 315 DCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLG-LLDLSKNKLSG 393 (983)
Q Consensus 315 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~ 393 (983)
..+++|+.|+|++|+++.+.+..|.++++|+.|+|.+| +..+.+.+|.++++|+ .|++.+ .++.
T Consensus 223 -------------~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~ 287 (329)
T 3sb4_A 223 -------------DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA 287 (329)
T ss_dssp -------------HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE
T ss_pred -------------HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE
Confidence 12455666666666665444455666666666666665 5555555666666666 666666 5554
Q ss_pred cCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEE
Q 042568 394 SIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILD 433 (983)
Q Consensus 394 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~ 433 (983)
+.+.+|.++++|+.|++++|.++...+..|.++++|+.++
T Consensus 288 I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5556666666666666666666655555666666666665
No 377
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=2.7e-17 Score=167.22 Aligned_cols=154 Identities=23% Similarity=0.317 Sum_probs=88.3
Q ss_pred ccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCE
Q 042568 352 CLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEI 431 (983)
Q Consensus 352 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~ 431 (983)
..+++|++|++++|.+. .+| .+..+++|+.|++++|.++. +..+..++ +|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~------------------------~L~~ 92 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLS------------------------NLER 92 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCT------------------------TCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCC------------------------CCCE
Confidence 45667777777777776 344 46666666666666665532 22344444 4555
Q ss_pred EEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCc
Q 042568 432 LDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNS 511 (983)
Q Consensus 432 L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 511 (983)
|++++|++++..|..+..+++|+. |++++|++++..|..+..+++|+.|+|++|++.+.+| .+..+++|+.|++++|+
T Consensus 93 L~l~~n~l~~~~~~~l~~l~~L~~-L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 93 LRIMGKDVTSDKIPNLSGLTSLTL-LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp EEEECTTCBGGGSCCCTTCTTCCE-EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred EEeECCccCcccChhhcCCCCCCE-EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence 555555554444444455555553 5555555554445555555566666666665222444 46666777777777777
Q ss_pred ccccccccccCCCCccEEecCCcccc
Q 042568 512 LEGLLPVSVGQLPYLKQFDVSSNRLF 537 (983)
Q Consensus 512 l~~~~p~~~~~l~~L~~L~ls~N~l~ 537 (983)
+++ ++ .+..+++|+.|++++|++.
T Consensus 171 i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 171 VHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CcC-hH-HhccCCCCCEEEeeCcccC
Confidence 764 33 5666777777777777764
No 378
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=4.5e-17 Score=164.62 Aligned_cols=175 Identities=19% Similarity=0.215 Sum_probs=107.6
Q ss_pred hhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCc-cccCCCccceeccccCCCCCCCCcccccccccccccccc
Q 042568 406 RRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPS-DVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLS 484 (983)
Q Consensus 406 ~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls 484 (983)
+.+++++|.++ .+|..+.. +|+.|++++|++++..+. .+..+++|+. |+|++|+|++..|..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVK-LELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCE-EECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCE-EECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 34455555554 44443322 566666666666654443 3566666664 6666666666666667777777777777
Q ss_pred ccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccccCCcCcc-ccCCCCcceEeccCCccccc
Q 042568 485 FNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQS-FQASPTLKQLNFSFNKFSGN 563 (983)
Q Consensus 485 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~l~l~~N~l~~~ 563 (983)
+|+|++..|..|..+++|+.|+|++|+|++.+|..+..+++|+.|+|++|++++..+.. +.. .++...+..+...+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCG 164 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCC
Confidence 77777666666777777888888888887777777777888888888888877665521 111 122223334444333
Q ss_pred cCCCCCCcccccccccCCcCccCCC
Q 042568 564 ISNKGAFSSLTIASFQGNDGLCGEI 588 (983)
Q Consensus 564 ~~~~~~~~~~~~~~~~~N~~lc~~~ 588 (983)
.|. .+......++..+...|..+
T Consensus 165 ~P~--~l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 165 APS--KVRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp SST--TTTTSBGGGSCTTTCCCCCC
T ss_pred CCh--HHcCCChhhCcHhhcCcCCC
Confidence 332 34555556666676667654
No 379
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=1.7e-16 Score=156.81 Aligned_cols=134 Identities=22% Similarity=0.211 Sum_probs=74.3
Q ss_pred CCCCcEEeCcCCcCC-CCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCccc
Q 042568 100 LSSLIVLDLSKNFFQ-GHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSL 178 (983)
Q Consensus 100 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L 178 (983)
.++|++|+|++|.++ +.+|..+..+++|++|+|++|.|++. ..++.+++|++|+|++|++++.+|..+. .+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE---KLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH---HCTTC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh---hCCCC
Confidence 356666666666666 56666666666666666666666643 5566666666666666666644443321 24444
Q ss_pred ceeecccccccCCCCCcccccccccceeecccCccccccc---hhhhccCCcceecccccccc
Q 042568 179 QYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVP---QALANSSKLEWLDLESNMFS 238 (983)
Q Consensus 179 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~ 238 (983)
++|+|++|.+++..+...+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 4444444444432111334455555555555555554433 34555555555555555554
No 380
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=157.22 Aligned_cols=130 Identities=23% Similarity=0.303 Sum_probs=95.4
Q ss_pred CEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCC
Q 042568 430 EILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSG 509 (983)
Q Consensus 430 ~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 509 (983)
+.+++++|+++ .+|..+. +.++. |++++|+|+ .+|..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~-L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTE-LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCE-EECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCE-EECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666665 3444332 34554 677777776 5566777777777788888888766667788888888888888
Q ss_pred CcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCcccccc
Q 042568 510 NSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNI 564 (983)
Q Consensus 510 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 564 (983)
|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 8888777778888888888888888888555567888888888888888887644
No 381
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=4.5e-16 Score=150.34 Aligned_cols=128 Identities=23% Similarity=0.260 Sum_probs=70.8
Q ss_pred CCCCcEEeCcCCcCC-CCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccCCCccc
Q 042568 100 LSSLIVLDLSKNFFQ-GHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSL 178 (983)
Q Consensus 100 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L 178 (983)
.++|++|++++|.++ +.+|..+..+++|++|+|++|.+++. ..++.+++|++|+|++|++++.+|..+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~--------- 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA--------- 84 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH---------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh---------
Confidence 356667777777766 56666666677777777777776643 556666666666666666664344322
Q ss_pred ceeecccccccCCCCCcccccccccceeecccCccccc-cchhhhccCCcceecccccccccccch---hhhcCCCCccE
Q 042568 179 QYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQ-VPQALANSSKLEWLDLESNMFSGELPS---EIISKMPQLQF 254 (983)
Q Consensus 179 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~ 254 (983)
..+++|++|++++|++++. .+..++.+++|++|++++|++++ +|. ..+..+++|++
T Consensus 85 -------------------~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 85 -------------------EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTY 144 (149)
T ss_dssp -------------------HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCE
T ss_pred -------------------hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCccc
Confidence 1234444444444444432 22445555555555555555542 222 34455555555
Q ss_pred EEcc
Q 042568 255 LYLS 258 (983)
Q Consensus 255 L~Ls 258 (983)
|+++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 5544
No 382
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=8.8e-16 Score=151.61 Aligned_cols=136 Identities=24% Similarity=0.212 Sum_probs=107.1
Q ss_pred CCCCEEEccCcccc-CcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceE
Q 042568 427 VNLEILDLSHNKIS-GIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESL 505 (983)
Q Consensus 427 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 505 (983)
++|+.|++++|+++ +.+|..+..+++|+. |++++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~-L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEF-LSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCE-EEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCE-EeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 56778888888877 667777777777775 88888887765 677788888888888888887778777778888888
Q ss_pred EeCCCcccccc-cccccCCCCccEEecCCccccCCcC---ccccCCCCcceEeccCCccccccC
Q 042568 506 NLSGNSLEGLL-PVSVGQLPYLKQFDVSSNRLFGEIP---QSFQASPTLKQLNFSFNKFSGNIS 565 (983)
Q Consensus 506 ~Ls~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~l~l~~N~l~~~~~ 565 (983)
+|++|++++.. +..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+...+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 88888888643 2678888889999999998885544 478888899999999888765543
No 383
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.59 E-value=5.9e-16 Score=169.93 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=101.1
Q ss_pred CCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCc-------------chhH--------HHHHHHHHHHhcCCCCc
Q 042568 668 GFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTG-------------EITG--------SFKRECQILKRIRHRNL 726 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~-------------~~~~--------~~~~E~~~l~~l~h~ni 726 (983)
-|.+...||+|+||.||+|...+|+.||||+++..... .... ...+|...+.++.+.++
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 37788999999999999999989999999987532110 0011 12346667777755544
Q ss_pred cceeeEEecCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCC
Q 042568 727 IRIITICSKPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDE 806 (983)
Q Consensus 727 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~ 806 (983)
....-+.. ...++||||++|+++.++... .....++.|++.++.|||+.| ||||||||.|||+++
T Consensus 176 ~vp~p~~~--~~~~LVME~i~G~~L~~l~~~----------~~~~~l~~qll~~l~~lH~~g---IVHrDLKp~NILl~~ 240 (397)
T 4gyi_A 176 PVPEPIAQ--SRHTIVMSLVDALPMRQVSSV----------PDPASLYADLIALILRLAKHG---LIHGDFNEFNILIRE 240 (397)
T ss_dssp SCCCEEEE--ETTEEEEECCSCEEGGGCCCC----------SCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEEE
T ss_pred CCCeeeec--cCceEEEEecCCccHhhhccc----------HHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeC
Confidence 32221211 133799999999888765431 124568899999999999986 999999999999987
Q ss_pred CC----------CEEEccccccccc
Q 042568 807 DL----------TALVADFGIAKLV 821 (983)
Q Consensus 807 ~~----------~~kl~Dfgla~~~ 821 (983)
++ .+.|+||+-+...
T Consensus 241 dgd~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 241 EKDAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp EECSSCTTSEEEEEEECCCTTCEET
T ss_pred CCCcccccccccceEEEEeCCcccC
Confidence 76 3899999987643
No 384
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=4.8e-15 Score=149.65 Aligned_cols=127 Identities=28% Similarity=0.326 Sum_probs=96.1
Q ss_pred EEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCcc
Q 042568 311 QIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNK 390 (983)
Q Consensus 311 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 390 (983)
.+++++|.++ .+|..+. ++|++|+|++|+++ .+|..+..+++|++|+|++|.|++..+..|.++++|+.|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4566666665 4555443 46778888888877 566777888888888888888887777778888888888888888
Q ss_pred ccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccC
Q 042568 391 LSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISG 441 (983)
Q Consensus 391 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 441 (983)
|++..|..|..+++|+.|+|++|.|++..+..|..+++|+.|+|++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 887777778888888888888888876555567788888888888888764
No 385
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.2e-15 Score=147.34 Aligned_cols=128 Identities=23% Similarity=0.296 Sum_probs=86.5
Q ss_pred CCCCEEEccCcccc-CcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceE
Q 042568 427 VNLEILDLSHNKIS-GIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESL 505 (983)
Q Consensus 427 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 505 (983)
++|+.|++++|.++ +.+|..+..+++|+. |++++|.+++. ..+..+++|+.|+|++|++++.+|..+..+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEF-LSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCE-EECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcE-EECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34555666666655 455555555556654 66666666544 556666677777777777776677777777778888
Q ss_pred EeCCCccccc-ccccccCCCCccEEecCCccccCCcC---ccccCCCCcceEeccC
Q 042568 506 NLSGNSLEGL-LPVSVGQLPYLKQFDVSSNRLFGEIP---QSFQASPTLKQLNFSF 557 (983)
Q Consensus 506 ~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~l~l~~ 557 (983)
++++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888887763 34677778888888888888875544 4677788888887763
No 386
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=5.8e-15 Score=147.05 Aligned_cols=132 Identities=19% Similarity=0.216 Sum_probs=85.0
Q ss_pred CEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCC
Q 042568 430 EILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSG 509 (983)
Q Consensus 430 ~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 509 (983)
+.+++++|+++ .+|..+ .++++. |++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATR-LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSE-EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcE-EEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 44555555555 233222 134443 56666666555555556666666677777777655455567777777777777
Q ss_pred CcccccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCccccccC
Q 042568 510 NSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSGNIS 565 (983)
Q Consensus 510 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 565 (983)
|++++..+..+..+++|+.|++++|++++..+..|..+++|++|++++|++++.+|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77776666667777777777777777775555556777778888888887777655
No 387
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=9.6e-15 Score=145.46 Aligned_cols=129 Identities=24% Similarity=0.287 Sum_probs=72.6
Q ss_pred EEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCcc
Q 042568 311 QIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNK 390 (983)
Q Consensus 311 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 390 (983)
.+++++|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|+.|+|++|+
T Consensus 11 ~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4444444444 2333222 455666666666654444445556666666666666665555555666666666666666
Q ss_pred ccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCc
Q 042568 391 LSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGI 442 (983)
Q Consensus 391 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 442 (983)
+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 6655555555666666666666666544444455566666666666666543
No 388
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.1e-16 Score=162.86 Aligned_cols=156 Identities=26% Similarity=0.326 Sum_probs=104.2
Q ss_pred cccCCCCcEEeCcCCcCCCCCcc------ccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCccc
Q 042568 97 LANLSSLIVLDLSKNFFQGHIPA------ELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIF 170 (983)
Q Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~ 170 (983)
+.....++.++++.+.++|.+|. .++.+++|++|+|++|.|++ +| .++.+++|++|+|++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44555666666666666666665 67777777777777777774 55 6777777777777777776 5554332
Q ss_pred ccCCCcccceeecccccccCCCCCcccccccccceeecccCccccccc-hhhhccCCcceecccccccccccch------
Q 042568 171 CSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVP-QALANSSKLEWLDLESNMFSGELPS------ 243 (983)
Q Consensus 171 ~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~------ 243 (983)
.+++|++|+|++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 91 ---~~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 91 ---VADTLEELWISYNQIAS-LS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp ---HHHHCSEEEEEEEECCC-HH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred ---cCCcCCEEECcCCcCCc-CC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 45667777777777664 33 35577788888888888775433 4677888888888888888755443
Q ss_pred ---hhhcCCCCccEEEccccccc
Q 042568 244 ---EIISKMPQLQFLYLSYNDFV 263 (983)
Q Consensus 244 ---~~~~~l~~L~~L~Ls~N~l~ 263 (983)
..+..+++|++|+ +|.+.
T Consensus 165 ~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHhCCCcEEEC--CcccC
Confidence 2456677777765 44443
No 389
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=8.5e-14 Score=156.95 Aligned_cols=238 Identities=13% Similarity=0.131 Sum_probs=102.4
Q ss_pred cceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCccEEEc
Q 042568 178 LQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQFLYL 257 (983)
Q Consensus 178 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 257 (983)
|+.+.+..| ++ .|+...|.+ .+|+.+.+.. .++.+.+.+|.++++|+.++|++|+++ .++...|. ..+|+.+.|
T Consensus 137 L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 137 IAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEEC
T ss_pred ccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEe
Confidence 444444433 22 334444433 2455555543 444444455555555555555555555 45555444 345555555
Q ss_pred cccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEe
Q 042568 258 SYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLN 337 (983)
Q Consensus 258 s~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 337 (983)
..+ +..+.. .+|.++++|+.+++..| ++..-...|.. ++|+.+.+ .+.++...+..|.++++|+.++
T Consensus 211 p~~-l~~I~~--------~aF~~~~~L~~l~l~~~-l~~I~~~aF~~--~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 211 PVT-LKEIGS--------QAFLKTSQLKTIEIPEN-VSTIGQEAFRE--SGITTVKL-PNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CTT-CCEECT--------TTTTTCTTCCCEECCTT-CCEECTTTTTT--CCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred CCc-hheehh--------hHhhCCCCCCEEecCCC-ccCcccccccc--CCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence 432 322221 23444455555555442 22222222222 24444444 2333333344555555555555
Q ss_pred ccccccC-----CCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccC
Q 042568 338 LSSNLLN-----GTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYG 412 (983)
Q Consensus 338 Ls~N~l~-----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 412 (983)
+.+|.+. ...+..|.++++|+.++|.+ .+..+...+|.++++|+.++|..| ++.+...+|.++ +|+.+.+.+
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence 5554443 12233344444444444442 233333444444444444444332 333333444444 444444444
Q ss_pred ccCCCCCcccccCCC-CCCEEEccCc
Q 042568 413 NHLSGTIPSSLGKCV-NLEILDLSHN 437 (983)
Q Consensus 413 N~l~~~~p~~l~~l~-~L~~L~Ls~N 437 (983)
|.+....+..|..++ +++.|++..+
T Consensus 355 n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 355 TTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCCcccccccccCCCCCccEEEeCHH
Confidence 444333333333332 3444444433
No 390
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=1.7e-16 Score=161.30 Aligned_cols=154 Identities=20% Similarity=0.296 Sum_probs=114.7
Q ss_pred cCcccchhhcccCccCCCCCcc------cccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccc
Q 042568 400 ANLSQLRRLLLYGNHLSGTIPS------SLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELS 473 (983)
Q Consensus 400 ~~l~~L~~L~l~~N~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~ 473 (983)
.....++.++++.|.++|..|. .+..+++|++|++++|++++ +| .+..+++|+. |++++|+++ .+|..+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~-L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRI-LSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCE-EEEEEEEEC-SCSSHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCE-EECCCCCcc-cccchhh
Confidence 3445666666666666666665 77888888888888888875 55 7777777875 888888887 5677777
Q ss_pred cccccccccccccccccCCCcccccccccceEEeCCCccccccc-ccccCCCCccEEecCCccccCCcCcc---------
Q 042568 474 KMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLP-VSVGQLPYLKQFDVSSNRLFGEIPQS--------- 543 (983)
Q Consensus 474 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~--------- 543 (983)
.+++|+.|+|++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|..
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 77888888888888885 45 57788888888888888885333 46778888888888888887766653
Q ss_pred -ccCCCCcceEeccCCccc
Q 042568 544 -FQASPTLKQLNFSFNKFS 561 (983)
Q Consensus 544 -~~~l~~L~~l~l~~N~l~ 561 (983)
+..+++|+.|| +|+++
T Consensus 169 ~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHCSSCSEEC--CGGGT
T ss_pred HHHhCCCcEEEC--CcccC
Confidence 77788888776 55554
No 391
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.9e-14 Score=143.19 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=81.5
Q ss_pred cccccCCCCcEEeCcCCcCCCCCccccCCCC-CCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccC
Q 042568 95 PALANLSSLIVLDLSKNFFQGHIPAELGSLI-RLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSN 173 (983)
Q Consensus 95 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~ 173 (983)
+.+.++++|++|+|++|.++ .+|. +..+. +|++|+|++|.|++ + ..|+.+++|++|+|++|+++ .+|..++ .
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~--~ 85 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGLD--Q 85 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCC-EECSCHH--H
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCccc-ccCcchh--h
Confidence 34566777778888888777 4443 44444 77778887777774 3 56777777777777777776 3444332 2
Q ss_pred CCcccceeecccccccCCCCC-cccccccccceeecccCccccccch----hhhccCCcceecccccccc
Q 042568 174 SSTSLQYIDLSNNSLTGEIPL-KNECELRNLRFLLLWSNRLVGQVPQ----ALANSSKLEWLDLESNMFS 238 (983)
Q Consensus 174 ~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~ 238 (983)
.+++|++|+|++|.++ .+|. ..+..+++|++|++++|.++. +|. .+..+++|++||+++|.+.
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 4555666666666554 2332 344455566666666666552 333 2555666666666665554
No 392
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.51 E-value=1.7e-13 Score=154.44 Aligned_cols=241 Identities=12% Similarity=0.115 Sum_probs=125.8
Q ss_pred CccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEe
Q 042568 283 NFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYL 362 (983)
Q Consensus 283 ~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 362 (983)
+|+.+.+..+ ++..-...|.+ .+|+.+.+.. .+....+..|.++++|+.+++++|+++......|. ..+|+.+.|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~--~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN--STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT--CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC--CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 4666665544 43333333333 2355555543 33333344455555555555555555432222333 344555555
Q ss_pred eCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCccCCCCCcccccCCCCCCEEEccCccccCc
Q 042568 363 SNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGI 442 (983)
Q Consensus 363 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 442 (983)
.++ +..+...+|.++++|+.++|..| ++.+...+|.+ .+|+.+.+ .|.++.+
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-------------------------~~L~~i~l-p~~i~~I 262 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-------------------------SGITTVKL-PNGVTNI 262 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-------------------------CCCSEEEE-ETTCCEE
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-------------------------CCccEEEe-CCCccEE
Confidence 422 33344444555555555555443 23233333433 34444444 2333333
Q ss_pred CCccccCCCccceeccccCCCCC-----CCCccccccccccccccccccccccCCCcccccccccceEEeCCCccccccc
Q 042568 443 IPSDVAGLRSLKLYLNLSSNHLD-----GPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLP 517 (983)
Q Consensus 443 ~p~~~~~l~~L~~~L~l~~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 517 (983)
.+..|.++.+|+. +++.+|.+. ...+..|.++.+|+.++|. |.++..-...|.++.+|+.++|..| ++.+-+
T Consensus 263 ~~~aF~~c~~L~~-l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 263 ASRAFYYCPELAE-VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp CTTTTTTCTTCCE-EEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred ChhHhhCCCCCCE-EEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 3444444444443 444444432 2344566667777777776 3455444556777777888777544 665566
Q ss_pred ccccCCCCccEEecCCccccCCcCccccCCC-CcceEeccCCcc
Q 042568 518 VSVGQLPYLKQFDVSSNRLFGEIPQSFQASP-TLKQLNFSFNKF 560 (983)
Q Consensus 518 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~l~l~~N~l 560 (983)
..|.++ +|+.+++++|.+....+..|..++ .++.|++..|.+
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 677777 788888888777655556677664 567777766554
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=2.7e-14 Score=142.02 Aligned_cols=133 Identities=18% Similarity=0.142 Sum_probs=88.3
Q ss_pred ccCCCCCCEEEccCccccCcCCccccCCC-ccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccc
Q 042568 423 LGKCVNLEILDLSHNKISGIIPSDVAGLR-SLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIA 501 (983)
Q Consensus 423 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 501 (983)
+.++++|+.|++++|+++. +|. +..+. +|+. |++++|.+++. ..+..+++|+.|+|++|+|++..|..+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~-L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDA-IDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSE-EECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCE-EECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3445555666666665553 333 23332 5553 66666666543 45666677777777777777544444577788
Q ss_pred cceEEeCCCcccccccc--cccCCCCccEEecCCccccCCcCcc----ccCCCCcceEeccCCcccc
Q 042568 502 LESLNLSGNSLEGLLPV--SVGQLPYLKQFDVSSNRLFGEIPQS----FQASPTLKQLNFSFNKFSG 562 (983)
Q Consensus 502 L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~----~~~l~~L~~l~l~~N~l~~ 562 (983)
|+.|+|++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|++|++++|....
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 888888888886 4554 6778888888888888887 55654 7888888888888887653
No 394
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.44 E-value=2.9e-12 Score=145.13 Aligned_cols=311 Identities=13% Similarity=0.069 Sum_probs=157.4
Q ss_pred ccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhcccccccEEeccCcccccccCCcccccC
Q 042568 94 SPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSN 173 (983)
Q Consensus 94 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~ 173 (983)
..++.++++|+.+.|.. .++..-..+|.++++|+.++|..+ ++..-..+|.++++|+.+.+..+ +. .+....| .
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF--~ 137 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAF--K 137 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTT--T
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceee--e
Confidence 34688888899888875 366444567888889999988755 55455667888888888777655 32 3333333 2
Q ss_pred CCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCCcc
Q 042568 174 SSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQLQ 253 (983)
Q Consensus 174 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 253 (983)
....+......... .+....|..+++|+.+.+.++. ..+...+|.++.+|+.+++..| ++ .++...+..+..|+
T Consensus 138 ~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 138 GCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLE 211 (394)
T ss_dssp TCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCC
T ss_pred cccccccccCcccc---ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccc
Confidence 23222222222221 3445566777778888776553 3355667777778888877766 43 56666677777777
Q ss_pred EEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCCcc
Q 042568 254 FLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLVNL 333 (983)
Q Consensus 254 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~~L 333 (983)
.+.+..+.... ........+|+.+.+..+ ++..-...+... ..++.+.+..+... .....|..+..+
T Consensus 212 ~i~~~~~~~~i----------~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~-~~l~~~~~~~~~~~-i~~~~F~~~~~l 278 (394)
T 4fs7_A 212 NMEFPNSLYYL----------GDFALSKTGVKNIIIPDS-FTELGKSVFYGC-TDLESISIQNNKLR-IGGSLFYNCSGL 278 (394)
T ss_dssp BCCCCTTCCEE----------CTTTTTTCCCCEEEECTT-CCEECSSTTTTC-SSCCEEEECCTTCE-ECSCTTTTCTTC
T ss_pred eeecCCCceEe----------ehhhcccCCCceEEECCC-ceeccccccccc-ccceeEEcCCCcce-eecccccccccc
Confidence 76665543211 111223345555554332 111111111111 23444444433222 233344444444
Q ss_pred cEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCc
Q 042568 334 TLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGN 413 (983)
Q Consensus 334 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 413 (983)
+.+....+.+. ...+..+.+|+.+.+.++ +..+...+|.++++|+.++|.++ ++.+...+|.++++|+.+.+..|
T Consensus 279 ~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 279 KKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 44444433221 123344444444444433 33333344444444444444322 33233344444444444444333
Q ss_pred cCCCCCcccccCCCCCCEEEcc
Q 042568 414 HLSGTIPSSLGKCVNLEILDLS 435 (983)
Q Consensus 414 ~l~~~~p~~l~~l~~L~~L~Ls 435 (983)
++..-..+|.++++|+.+++.
T Consensus 354 -l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 354 -LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp -CCEECTTTBTTCTTCCEEEEE
T ss_pred -ccEehHHHhhCCCCCCEEEEC
Confidence 332223344444444444443
No 395
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=1.5e-12 Score=147.42 Aligned_cols=60 Identities=10% Similarity=-0.009 Sum_probs=32.1
Q ss_pred CCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceeccccc
Q 042568 173 NSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESN 235 (983)
Q Consensus 173 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 235 (983)
.++++|+.+.+..+ ++ .|+...|.++++|+.+++.++ ++.+...+|.++++|+.+.+..+
T Consensus 68 ~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 68 QGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM 127 (394)
T ss_dssp TTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred hCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence 34556666666533 33 455555555666666666543 44344455555566655555433
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=3e-13 Score=133.40 Aligned_cols=106 Identities=20% Similarity=0.224 Sum_probs=65.8
Q ss_pred ccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccc
Q 042568 457 LNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRL 536 (983)
Q Consensus 457 L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 536 (983)
+++++|.++. +|..+. ++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|
T Consensus 14 l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 14 VDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 4444454442 333332 4556666666666655566666666666777777776665555566677777777777777
Q ss_pred cCCcCccccCCCCcceEeccCCccccccC
Q 042568 537 FGEIPQSFQASPTLKQLNFSFNKFSGNIS 565 (983)
Q Consensus 537 ~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 565 (983)
++..|..|..+++|++|+|++|++++..+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 65555566677777777777777665544
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=4.7e-13 Score=132.44 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=70.0
Q ss_pred ccccCCCCCCCCccccccccccccccccccccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCccc
Q 042568 457 LNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRL 536 (983)
Q Consensus 457 L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 536 (983)
+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|
T Consensus 17 l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 17 VNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 555555554 3444433 5566667777777666666677777777777777777765555567777777777777777
Q ss_pred cCCcCccccCCCCcceEeccCCccccccC
Q 042568 537 FGEIPQSFQASPTLKQLNFSFNKFSGNIS 565 (983)
Q Consensus 537 ~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 565 (983)
++..+..|..+++|++|+|++|++.+.++
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 75444557777777777777777765544
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=7.6e-13 Score=130.49 Aligned_cols=105 Identities=25% Similarity=0.341 Sum_probs=65.0
Q ss_pred cEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCc
Q 042568 334 TLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGN 413 (983)
Q Consensus 334 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 413 (983)
+.+++++|.++ .+|..+ .++|++|+|++|.|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45555555555 344433 255666666666666666666666666666666666666555555666666666666666
Q ss_pred cCCCCCcccccCCCCCCEEEccCccccC
Q 042568 414 HLSGTIPSSLGKCVNLEILDLSHNKISG 441 (983)
Q Consensus 414 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 441 (983)
+|++..+..|..+++|+.|+|++|++++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 6665555556667777777777777664
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=1.6e-12 Score=128.54 Aligned_cols=104 Identities=27% Similarity=0.378 Sum_probs=59.5
Q ss_pred cEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhcccCc
Q 042568 334 TLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLYGN 413 (983)
Q Consensus 334 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 413 (983)
+.+++++|+++ .+|..+. ++|++|+|++|.|++..|..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555554 3343332 45555555555555555555666666666666666666544444556666666666666
Q ss_pred cCCCCCcccccCCCCCCEEEccCcccc
Q 042568 414 HLSGTIPSSLGKCVNLEILDLSHNKIS 440 (983)
Q Consensus 414 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 440 (983)
+|++..+..|..+++|+.|+|++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666444444666666666666666666
No 400
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=3.8e-12 Score=141.53 Aligned_cols=109 Identities=22% Similarity=0.266 Sum_probs=90.1
Q ss_pred cceeeEEECCCCCeEEEEEcccCCcccccccccccCCCCcEEeCcC-CcCCCCCccccCCCCCCCEEeccCccCCCCchh
Q 042568 65 CNWSGVKCNNSRNKVVELDLSARSIYGTISPALANLSSLIVLDLSK-NFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPS 143 (983)
Q Consensus 65 c~w~gv~c~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 143 (983)
|.|.+|.|++. +++. .+|. +..+++|++|+|++ |.|++..|..|++|++|++|+|++|+|++..|.
T Consensus 8 C~~~~v~~~~~-----------n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 74 (347)
T 2ifg_A 8 HGSSGLRCTRD-----------GALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74 (347)
T ss_dssp SSSSCEECCSS-----------CCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred ccCCEEEcCCC-----------CCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH
Confidence 88888887542 1565 4788 99999999999996 999987778999999999999999999998899
Q ss_pred hhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccC
Q 042568 144 QLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTG 190 (983)
Q Consensus 144 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~ 190 (983)
.|++|++|++|||++|+|+ .+|..++ ..++ |+.|+|++|.+..
T Consensus 75 ~~~~l~~L~~L~l~~N~l~-~~~~~~~--~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSFNALE-SLSWKTV--QGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp GGGSCSCCCEEECCSSCCS-CCCSTTT--CSCC-CCEEECCSSCCCC
T ss_pred HhcCCcCCCEEeCCCCccc-eeCHHHc--ccCC-ceEEEeeCCCccC
Confidence 9999999999999999998 5666554 2233 7777777777763
No 401
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=1.1e-13 Score=154.51 Aligned_cols=168 Identities=20% Similarity=0.108 Sum_probs=76.6
Q ss_pred CCCcEEeCcCCcCCCCCcccc----C-CCCCCCEEeccCccCCCCchhhh-cccccccEEeccCcccccccCCcccccCC
Q 042568 101 SSLIVLDLSKNFFQGHIPAEL----G-SLIRLKQLSLSWNSLQGKIPSQL-GSLHQLEYLDLGNNKLVGEIPIPIFCSNS 174 (983)
Q Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~----~-~l~~L~~L~Ls~n~l~~~~p~~~-~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~ 174 (983)
++|++|+|++|.++......+ . ..++|++|+|++|.|+......+ ..+++|++|+|++|.++......+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~--- 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD--- 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH---
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH---
Confidence 456666666666654322222 1 12456666666666653322222 23455666666666554221111110
Q ss_pred CcccceeecccccccCCCCCccc-ccccccceeecccCcccc----ccchhhhccCCcceecccccccccccc---hhhh
Q 042568 175 STSLQYIDLSNNSLTGEIPLKNE-CELRNLRFLLLWSNRLVG----QVPQALANSSKLEWLDLESNMFSGELP---SEII 246 (983)
Q Consensus 175 l~~L~~L~Ls~N~l~~~ip~~~~-~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~ 246 (983)
.+ ...++|++|+|++|.|+. .++..+..+++|++|+|++|.|++.-. ...+
T Consensus 149 ---------------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L 207 (372)
T 3un9_A 149 ---------------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207 (372)
T ss_dssp ---------------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred ---------------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence 00 123445555555555543 223334555566666666666542110 1223
Q ss_pred cCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccc
Q 042568 247 SKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGG 296 (983)
Q Consensus 247 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 296 (983)
...++|++|+|++|.|.... ...+...+..+++|++|+|++|.+++
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g----~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTA----ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHH----HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCeEECCCCCCCHHH----HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 44455555555555543211 11222333344555555555555543
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=4.2e-13 Score=149.78 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=76.8
Q ss_pred CeEEEEEcccCCccccccccccc-----CCCCcEEeCcCCcCCCCCcccc-CCCCCCCEEeccCccCCCCchhhhc----
Q 042568 77 NKVVELDLSARSIYGTISPALAN-----LSSLIVLDLSKNFFQGHIPAEL-GSLIRLKQLSLSWNSLQGKIPSQLG---- 146 (983)
Q Consensus 77 ~~v~~l~l~~~~l~g~~~~~l~~-----l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~---- 146 (983)
..++.|+|++|.++......+.. .++|++|+|++|.++......+ ..+++|++|+|++|.|+......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 35889999999998654444333 3799999999999985433333 3567899999999999865555553
Q ss_pred -ccccccEEeccCcccccccCCccc-ccCCCcccceeeccccccc
Q 042568 147 -SLHQLEYLDLGNNKLVGEIPIPIF-CSNSSTSLQYIDLSNNSLT 189 (983)
Q Consensus 147 -~L~~L~~L~Ls~N~l~~~~p~~~~-~~~~l~~L~~L~Ls~N~l~ 189 (983)
..++|++|+|++|.|+......+. .+..+++|++|+|++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 457899999999998732111111 1123455666666666554
No 403
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=1.1e-11 Score=137.79 Aligned_cols=103 Identities=20% Similarity=0.173 Sum_probs=54.3
Q ss_pred ccccCC-CCCCCCccccccccccccccccc-cccccCCCcccccccccceEEeCCCcccccccccccCCCCccEEecCCc
Q 042568 457 LNLSSN-HLDGPLPLELSKMDMVLAIDLSF-NNLSGSIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSN 534 (983)
Q Consensus 457 L~l~~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 534 (983)
++++++ +|++ +|. +..+++|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|++..|..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 444444 4442 444 55555555555553 5555444455555555555555555555555555555555555555555
Q ss_pred cccCCcCccccCCCCcceEeccCCcccc
Q 042568 535 RLFGEIPQSFQASPTLKQLNFSFNKFSG 562 (983)
Q Consensus 535 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 562 (983)
+|++..|..|..++ |+.|+|.+|+|.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 55543333444333 5555555555554
No 404
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.16 E-value=1.5e-09 Score=122.80 Aligned_cols=308 Identities=13% Similarity=0.156 Sum_probs=143.3
Q ss_pred ccccCC-CCcEEeCcCCcCCCCCccccCCCCCCCEEeccCcc---CCCCchhhhcccccccEEeccCcccccccCCcccc
Q 042568 96 ALANLS-SLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNS---LQGKIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFC 171 (983)
Q Consensus 96 ~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~ 171 (983)
++.+.. .|+.+.+..+ ++..-..+|.++++|+.+.++.|. ++..-..+|..+.+|+.+.+..+ ++ .++...+
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF- 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAF- 133 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTT-
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhh-
Confidence 455553 4666666543 443344566666666666666553 44333455666666666555443 22 2333222
Q ss_pred cCCCcccceeecccccccCCCCCcccccccccceeecccCccccccchhhhccCCcceecccccccccccchhhhcCCCC
Q 042568 172 SNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMFSGELPSEIISKMPQ 251 (983)
Q Consensus 172 ~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 251 (983)
..+.+|+.+.+..+.- .++...|....+|+.+.+..+ ++.+...+|.+ .+|+.+.+..+-. .+....+..+..
T Consensus 134 -~~c~~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~--~i~~~af~~c~~ 206 (394)
T 4gt6_A 134 -HHCEELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT--RIGTNAFSECFA 206 (394)
T ss_dssp -TTCTTCCEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC--EECTTTTTTCTT
T ss_pred -hhhcccccccccceee--eecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc--ccccchhhhccc
Confidence 3445555555543221 334444444555555555433 22233333332 3444444443322 223333444444
Q ss_pred ccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCcccccCCccccccccCeeEEEccCccccccCCCCCCCCC
Q 042568 252 LQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNNLGGMIPSIIGDLSTNLVQIHLDCNLIYGKIPPHISNLV 331 (983)
Q Consensus 252 L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~l~~l~ 331 (983)
++......+.....+... +. ........... .+. ...+..+.+. +.+.......|.++.
T Consensus 207 l~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~-------~~~-----~~~~~~~~ip-~~v~~i~~~aF~~c~ 265 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVL-----YE---KSANGDYALIR-------YPS-----QREDPAFKIP-NGVARIETHAFDSCA 265 (394)
T ss_dssp CCEEEECCSSSCBSSSCE-----EE---ECTTSCEEEEE-------CCT-----TCCCSEEECC-TTEEEECTTTTTTCS
T ss_pred cceeccccccccccccee-----ec---ccccccccccc-------ccc-----ccccceEEcC-CcceEcccceeeecc
Confidence 444443333222111100 00 00000000000 000 0111222221 122223344566667
Q ss_pred cccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhccc
Q 042568 332 NLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLY 411 (983)
Q Consensus 332 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 411 (983)
+|+.+.+.++..+ .....|.+++.|+.+.+. +.+..+...+|.++.+|+.++|..+ ++.+...+|.++++|+.+.+.
T Consensus 266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp SCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 7777777655433 444556666777777764 3444455566677777777777654 444445566666666666665
Q ss_pred CccCCCCCcccccCCCCCCEEEccCccc
Q 042568 412 GNHLSGTIPSSLGKCVNLEILDLSHNKI 439 (983)
Q Consensus 412 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 439 (983)
.+ ++..-..+|.++++|+.+++.+|..
T Consensus 343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 343 SS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred cc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 43 4434445666666666666666543
No 405
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.14 E-value=1.9e-09 Score=121.81 Aligned_cols=108 Identities=18% Similarity=0.290 Sum_probs=50.5
Q ss_pred cccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccc
Q 042568 422 SLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIA 501 (983)
Q Consensus 422 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 501 (983)
.|.++++|+.+.+. +.++.+....|.++.+|+. +++..+ ++..-..+|.++.+|+.+.|..+ ++..-...|.++.+
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~-i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKS-IDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCE-EECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCE-EEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 34444444444443 2233233344444445543 444432 33333445666666666666433 44233456777777
Q ss_pred cceEEeCCCcccccccccccCCCCccEEecCCccc
Q 042568 502 LESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRL 536 (983)
Q Consensus 502 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 536 (983)
|+.+++.+|.... ..+....+|+.+.+..|.+
T Consensus 359 L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 359 LNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 7777777765432 3455666777777666644
No 406
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.13 E-value=1.3e-10 Score=123.49 Aligned_cols=146 Identities=16% Similarity=0.128 Sum_probs=113.8
Q ss_pred HHHhCCCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcC-CCCccceeeEEecCCceeE
Q 042568 663 IEATGGFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIR-HRNLIRIITICSKPDFKAL 741 (983)
Q Consensus 663 ~~~~~~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~l 741 (983)
...-++|......+.|+.+.||++... ++.+++|+...... .....+.+|+++++.+. +..+.++++++...+..++
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~-~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~l 87 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYK-GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNL 87 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGT-TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEE
T ss_pred HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccC-CCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEE
Confidence 334457877888888999999999865 68899999864321 12356899999999995 6778899999988888999
Q ss_pred EEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhcc----------------------------------
Q 042568 742 VLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHH---------------------------------- 787 (983)
Q Consensus 742 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~---------------------------------- 787 (983)
||||++|.++.+.+.. ......++.+++++++.||+.
T Consensus 88 v~e~i~G~~l~~~~~~---------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (263)
T 3tm0_A 88 LMSEADGVLCSEEYED---------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENW 158 (263)
T ss_dssp EEECCSSEEHHHHCCT---------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGG
T ss_pred EEEecCCeehhhccCC---------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccc
Confidence 9999999998775321 112347889999999999981
Q ss_pred ----------------------CCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 788 ----------------------SPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 788 ----------------------~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
.+..++|+|++|.||+++++..+.|+||+.+.
T Consensus 159 ~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 159 EEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp STTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred cccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 11348999999999999876566799999875
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.06 E-value=2.3e-10 Score=121.56 Aligned_cols=137 Identities=16% Similarity=0.107 Sum_probs=102.2
Q ss_pred CCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCC--ccceeeEEecCCceeEEEec
Q 042568 668 GFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRN--LIRIITICSKPDFKALVLPL 745 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~ 745 (983)
++....+.+.|..+.||++...+|+.+++|+.... ....+.+|+++++.+++.+ +.+++++....+..++||||
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~----~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~ 96 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG----ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGE 96 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC----TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEEC
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc----cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEe
Confidence 34433333456669999998777888999997543 2356889999999996545 45688888887788999999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccC-------------------------------------
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHS------------------------------------- 788 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~------------------------------------- 788 (983)
++|.++. ... .+ ...++.++++.++.||+..
T Consensus 97 i~G~~l~--~~~-------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (264)
T 1nd4_A 97 VPGQDLL--SSH-------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQG 164 (264)
T ss_dssp CSSEETT--TSC-------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTT
T ss_pred cCCcccC--cCc-------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccC
Confidence 9998884 221 11 2367788888888888743
Q ss_pred ------------------CCCeEeecCCCCCeEeCCCCCEEEcccccccc
Q 042568 789 ------------------PIKVVHCDLKPSNILLDEDLTALVADFGIAKL 820 (983)
Q Consensus 789 ------------------~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~ 820 (983)
+..++|+|++|.||+++++..+.|+|||.+..
T Consensus 165 ~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 165 LAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp CCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred ccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 11299999999999998776677999998753
No 408
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.96 E-value=2.5e-09 Score=119.20 Aligned_cols=143 Identities=13% Similarity=0.225 Sum_probs=107.8
Q ss_pred CCccccCCcEeEEEEEECCCcEEEEEEee--cccCcchhHHHHHHHHHHHhcC--CCCccceeeEEecC---CceeEEEe
Q 042568 672 SSLIGSGRFGHVYKGVLQDNTRIAVKVLD--LTTTGEITGSFKRECQILKRIR--HRNLIRIITICSKP---DFKALVLP 744 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~--~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~e 744 (983)
.+.++.|.++.||+.... +..+++|+.. ..........+.+|+++++.++ +..+.+++.++.+. +..++|||
T Consensus 43 ~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 567899999999999876 4678888875 3222123457889999999997 45578889888766 44799999
Q ss_pred cccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccC------------------------------------
Q 042568 745 LMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHS------------------------------------ 788 (983)
Q Consensus 745 ~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~------------------------------------ 788 (983)
|++|..+.+.. ...++...+..++.+++++|+.||+..
T Consensus 122 ~v~G~~l~~~~------~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (359)
T 3dxp_A 122 FVSGRVLWDQS------LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIP 195 (359)
T ss_dssp CCCCBCCCCTT------CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCH
T ss_pred ecCCeecCCCc------cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCCh
Confidence 99998875422 123678888999999999999999721
Q ss_pred -------------------CCCeEeecCCCCCeEeCCCCC--EEEccccccccc
Q 042568 789 -------------------PIKVVHCDLKPSNILLDEDLT--ALVADFGIAKLV 821 (983)
Q Consensus 789 -------------------~~~ivH~Dikp~NiLl~~~~~--~kl~Dfgla~~~ 821 (983)
+..++|+|++|.||+++.++. +.|+||+.+..-
T Consensus 196 ~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g 249 (359)
T 3dxp_A 196 AMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG 249 (359)
T ss_dssp HHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred HHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence 246999999999999997753 689999998754
No 409
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.93 E-value=1.7e-11 Score=128.21 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=48.2
Q ss_pred CcceeeEEECCCCCeEEEEEccc---CCccccccc-ccccCCCCcEEeCcCCcCCCCCcc-ccCCCCCCCE--EeccCcc
Q 042568 64 VCNWSGVKCNNSRNKVVELDLSA---RSIYGTISP-ALANLSSLIVLDLSKNFFQGHIPA-ELGSLIRLKQ--LSLSWNS 136 (983)
Q Consensus 64 ~c~w~gv~c~~~~~~v~~l~l~~---~~l~g~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~--L~Ls~n~ 136 (983)
.|.|.|+.|+....+|+.+...+ ..+.|.+.+ .+..++. .|...+|.-++.++- .+...+.|+. ++++.|.
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~ 154 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNR 154 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTS
T ss_pred HHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCCH
Confidence 58899999997666776666554 334444432 2222222 222333333322221 1333334444 5555553
Q ss_pred CCCCchh----hhcccccccEEeccCccccc
Q 042568 137 LQGKIPS----QLGSLHQLEYLDLGNNKLVG 163 (983)
Q Consensus 137 l~~~~p~----~~~~L~~L~~L~Ls~N~l~~ 163 (983)
.. .++. ...++++|++|+|++|+|++
T Consensus 155 ~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~ 184 (267)
T 3rw6_A 155 RS-CMAATLRIIEENIPELLSLNLSNNRLYR 184 (267)
T ss_dssp HH-HHHHHHHHHHHHCTTCCEEECTTSCCCC
T ss_pred HH-HHHHHHHHHHhhCCCCCEEECCCCCCCC
Confidence 32 2222 22455666666666666664
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=5.4e-10 Score=123.46 Aligned_cols=212 Identities=11% Similarity=0.101 Sum_probs=99.4
Q ss_pred CeEEEEEcccCCccc-c-------cccccccCCCCcEEeCcCCcCC---------CCCccccCCCCCCCEEeccCccCCC
Q 042568 77 NKVVELDLSARSIYG-T-------ISPALANLSSLIVLDLSKNFFQ---------GHIPAELGSLIRLKQLSLSWNSLQG 139 (983)
Q Consensus 77 ~~v~~l~l~~~~l~g-~-------~~~~l~~l~~L~~L~Ls~n~l~---------~~~p~~~~~l~~L~~L~Ls~n~l~~ 139 (983)
.+|+.|.+...+..| . +..++..+++|+.|.+..+... +.++..+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 467777777665543 2 2345667788888888665331 123344455667777777666211
Q ss_pred CchhhhcccccccEEeccCcccccccCCcccccCCCcccceeeccc--ccccCCCCCcccccccccceeecccCcccccc
Q 042568 140 KIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSN--NSLTGEIPLKNECELRNLRFLLLWSNRLVGQV 217 (983)
Q Consensus 140 ~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~--N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~ 217 (983)
.++. +. +++|++|+|..|.+.......+ +...+++|++|+|+. |...+... +.+ +
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l-~~~~lp~L~~L~L~~~~~~~~~~~~-------------------~~~-l 242 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDI-LGSDLPNLEKLVLYVGVEDYGFDGD-------------------MNV-F 242 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHH-HHSBCTTCCEEEEECBCGGGTCCSC-------------------GGG-T
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHH-HHccCCCCcEEEEeccccccccchh-------------------HHH-H
Confidence 2222 32 5666666666665542211111 112455555555542 11111100 000 0
Q ss_pred chhh--hccCCcceecccccccccccchhhh--cCCCCccEEEccccccccCCCCCCCcccccccCCCCCccEEEccCCc
Q 042568 218 PQAL--ANSSKLEWLDLESNMFSGELPSEII--SKMPQLQFLYLSYNDFVSHDGNTNLEPFFASLANSSNFQELELAGNN 293 (983)
Q Consensus 218 p~~l--~~l~~L~~L~Ls~N~l~~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 293 (983)
...+ ..+++|++|+|++|.+.+..+..++ ..+++|++|+|+.|.+.... ...++..+.++++|+.|+|++|.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G----~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG----ARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH----HHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH----HHHHHhhcccCCcceEEECCCCc
Confidence 0011 1244555555555555432222222 13555666666665543311 11222333455677777777776
Q ss_pred ccccCCccccccccCeeEEEccCcc
Q 042568 294 LGGMIPSIIGDLSTNLVQIHLDCNL 318 (983)
Q Consensus 294 l~~~~p~~~~~l~~~L~~L~L~~N~ 318 (983)
++...-..+... -...++++.++
T Consensus 319 i~d~~~~~l~~a--lg~~~~~~~~~ 341 (362)
T 2ra8_A 319 LSDEMKKELQKS--LPMKIDVSDSQ 341 (362)
T ss_dssp CCHHHHHHHHHH--CCSEEECCSBC
T ss_pred CCHHHHHHHHHH--cCCEEEecCCc
Confidence 664332222221 02446666665
No 411
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.85 E-value=1.3e-09 Score=118.44 Aligned_cols=198 Identities=16% Similarity=0.134 Sum_probs=125.0
Q ss_pred CCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcC-CCC--ccceeeEEecCC---ceeEEEec
Q 042568 672 SSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIR-HRN--LIRIITICSKPD---FKALVLPL 745 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e~ 745 (983)
.+.++.|....||++. +.+++|+.... .....+.+|+++++.+. +.. +.+++.+..... ..|+||||
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~---~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~ 97 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS---RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTK 97 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH---HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEEC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc---chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcc
Confidence 4568999999999873 56899986422 34577899999999984 333 344555443333 34889999
Q ss_pred ccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 042568 746 MSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHH-------------------------------------- 787 (983)
Q Consensus 746 ~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~-------------------------------------- 787 (983)
++|.++.+... ..++..++..++.++++.++.||+.
T Consensus 98 i~G~~l~~~~~------~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (304)
T 3sg8_A 98 IKGVPLTPLLL------NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMK 171 (304)
T ss_dssp CCCEECCHHHH------HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred cCCeECCcccc------ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHH
Confidence 99988865332 2366777888888888888888851
Q ss_pred -----------------CCCCeEeecCCCCCeEeCC--CCCEEEccccccccccCCcccccccCCCCccc-cccCccccc
Q 042568 788 -----------------SPIKVVHCDLKPSNILLDE--DLTALVADFGIAKLVKGIDESVNCANDSMSFT-STDGLLCGS 847 (983)
Q Consensus 788 -----------------~~~~ivH~Dikp~NiLl~~--~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~-~~~~~~~gt 847 (983)
.+..++|+|++|.||++++ ...+.|+||+.+..-.+..+-.........+. .........
T Consensus 172 ~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~ 251 (304)
T 3sg8_A 172 KVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNH 251 (304)
T ss_dssp HHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHH
Confidence 1235899999999999998 45678999999876443211100000000000 000001111
Q ss_pred ccccc-ccccCCCCCCccchhHHHHHHHHHHHhCCCCC
Q 042568 848 VGYIA-PEYGMGKRASTHGDVYSFGVLLLEIVTGRRPT 884 (983)
Q Consensus 848 ~~y~a-PE~~~~~~~~~k~Dv~SlG~il~elltg~~p~ 884 (983)
.++.. |+.... .....+.|++|.++|.+.+|+.+|
T Consensus 252 Y~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 252 YKHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp HTCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence 11222 222111 122368999999999999998775
No 412
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.78 E-value=2.4e-07 Score=103.95 Aligned_cols=121 Identities=15% Similarity=0.146 Sum_probs=59.2
Q ss_pred cccCCCCCCEEEccCccccCcCCccccCCCccceeccccCCCCCCCCccccccccccccccccccccccCCCcccccccc
Q 042568 422 SLGKCVNLEILDLSHNKISGIIPSDVAGLRSLKLYLNLSSNHLDGPLPLELSKMDMVLAIDLSFNNLSGSIPPQLGSCIA 501 (983)
Q Consensus 422 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 501 (983)
.|..+..|+.+.+..+ ++......|.++..|+. +.+..+ ++......|.++.+|+.+++.++.++..-...|.++.+
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~-i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT-LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE-EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcc-cccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 3344444444444433 22233333444444443 444322 33233344555555556666555555333455666666
Q ss_pred cceEEeCCCcccccccccccCCCCccEEecCCccccCCcCccccCC
Q 042568 502 LESLNLSGNSLEGLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQAS 547 (983)
Q Consensus 502 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l 547 (983)
|+.+.|..+ ++.+-...|.++.+|+.+.+..+ ++..-..+|.+.
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 666666543 55444556666677776666544 432223445444
No 413
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=3.3e-09 Score=117.11 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=96.8
Q ss_pred eEEEEEcccCCc---------ccccccccccCCCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCccCCCCchhhhc--
Q 042568 78 KVVELDLSARSI---------YGTISPALANLSSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNSLQGKIPSQLG-- 146 (983)
Q Consensus 78 ~v~~l~l~~~~l---------~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-- 146 (983)
++..|.+..... .+.+.+.+..+++|+.|+|++|.-. .+|. +. +++|++|+|..|.+.......+.
T Consensus 140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHc
Confidence 567777654322 2245566788999999999988311 3443 43 88999999999998755555555
Q ss_pred ccccccEEeccC--cccccccCC----cccccCCCcccceeecccccccCCCCCccc--ccccccceeecccCcccccc-
Q 042568 147 SLHQLEYLDLGN--NKLVGEIPI----PIFCSNSSTSLQYIDLSNNSLTGEIPLKNE--CELRNLRFLLLWSNRLVGQV- 217 (983)
Q Consensus 147 ~L~~L~~L~Ls~--N~l~~~~p~----~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~--~~l~~L~~L~L~~N~l~~~~- 217 (983)
.+++|++|+|+. |...|.... .+.....+++|++|+|++|.+.+..+...+ ..+++|++|+|+.|.+.+..
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 789999999964 322221100 011112456777777777776543221111 13567777777777766532
Q ss_pred ---chhhhccCCcceecccccccc
Q 042568 218 ---PQALANSSKLEWLDLESNMFS 238 (983)
Q Consensus 218 ---p~~l~~l~~L~~L~Ls~N~l~ 238 (983)
+..+..+++|+.|+|++|.++
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHhhcccCCcceEEECCCCcCC
Confidence 333345567777777777665
No 414
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.74 E-value=3.6e-07 Score=102.47 Aligned_cols=126 Identities=14% Similarity=0.145 Sum_probs=61.6
Q ss_pred CCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeCCcccCCCCCCCCCCCCCcEEEccCccccCcCcccccCccc
Q 042568 325 PHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSNNSLSGEIPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQ 404 (983)
Q Consensus 325 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 404 (983)
..+....+|+.+.+..+ ++......+..+..|+.+.+..+ ++.+...+|.+..+|+.+.+..+ +.......|.++++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 34444455555555433 22233344555555555555544 33344455555556666655433 33333445555555
Q ss_pred chhhcccCccCCCCCcccccCCCCCCEEEccCccccCcCCccccCCCccc
Q 042568 405 LRRLLLYGNHLSGTIPSSLGKCVNLEILDLSHNKISGIIPSDVAGLRSLK 454 (983)
Q Consensus 405 L~~L~l~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 454 (983)
|+.+.+.++.++..-...|.++.+|+.++|..+ ++.+-...|.++.+|+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 555555555554333445555555555555433 3323334444445444
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=4.2e-09 Score=105.01 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=73.7
Q ss_pred cccccccccCCCCcEEeCcCC-cCCCC----CccccCCCCCCCEEeccCccCCCC----chhhhcccccccEEeccCccc
Q 042568 91 GTISPALANLSSLIVLDLSKN-FFQGH----IPAELGSLIRLKQLSLSWNSLQGK----IPSQLGSLHQLEYLDLGNNKL 161 (983)
Q Consensus 91 g~~~~~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~L~~L~~L~Ls~N~l 161 (983)
..+...+...+.|++|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 345566777888888888888 77642 344566677888888888887642 344455556777777777777
Q ss_pred ccccCCcccccCCCcccceeecccccccCCCCCcccccccccceeec--ccCccccc----cchhhhccCCcceeccccc
Q 042568 162 VGEIPIPIFCSNSSTSLQYIDLSNNSLTGEIPLKNECELRNLRFLLL--WSNRLVGQ----VPQALANSSKLEWLDLESN 235 (983)
Q Consensus 162 ~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~Ls~N 235 (983)
....-..+. ..+...++|++|+| ++|.|... +...+...++|++|+|++|
T Consensus 106 ~~~g~~~l~------------------------~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 106 SGSGILALV------------------------EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CHHHHHHHH------------------------HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CHHHHHHHH------------------------HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 632111111 11223445666666 55655533 2334444466666666666
Q ss_pred ccc
Q 042568 236 MFS 238 (983)
Q Consensus 236 ~l~ 238 (983)
.+.
T Consensus 162 ~i~ 164 (185)
T 1io0_A 162 QQG 164 (185)
T ss_dssp SHH
T ss_pred CCC
Confidence 664
No 416
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.48 E-value=4.2e-07 Score=99.27 Aligned_cols=138 Identities=18% Similarity=0.188 Sum_probs=102.7
Q ss_pred CCCCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCC--C--CccceeeEEecCCceeEEE
Q 042568 668 GFCPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRH--R--NLIRIITICSKPDFKALVL 743 (983)
Q Consensus 668 ~f~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h--~--niv~l~~~~~~~~~~~lv~ 743 (983)
.....+.++.|....||+. ++.+++|+... ......+.+|.++++.+.+ . .+.+++++ +..++||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~---~~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvm 106 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKR---DSVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIM 106 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESS---HHHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCc---HHHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEE
Confidence 4455678999999999998 67789997632 2224568999999999976 1 23455544 5679999
Q ss_pred ecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCC----------------------------------
Q 042568 744 PLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSP---------------------------------- 789 (983)
Q Consensus 744 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~---------------------------------- 789 (983)
||++|.++.+... ..++..++..++.++++.++.||+...
T Consensus 107 e~i~G~~l~~~~~------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (320)
T 3r70_A 107 KYIKGERITYEQY------HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQL 180 (320)
T ss_dssp ECCCCBCCCHHHH------TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eecCCcccccccc------ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccc
Confidence 9999988864321 235667777888888888888884321
Q ss_pred --------------------------CCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 790 --------------------------IKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 790 --------------------------~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
..++|+|++|.||+++.+..+.|+||+.+..-.
T Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~~ 239 (320)
T 3r70_A 181 LTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVGD 239 (320)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEEC
T ss_pred ccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccCC
Confidence 235999999999999986667999999987543
No 417
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=5.7e-08 Score=96.68 Aligned_cols=122 Identities=12% Similarity=0.111 Sum_probs=67.7
Q ss_pred CccccCCCCCCCEEeccCc-cCCC----CchhhhcccccccEEeccCcccccccCCcccccCCCcccceeecccccccCC
Q 042568 117 IPAELGSLIRLKQLSLSWN-SLQG----KIPSQLGSLHQLEYLDLGNNKLVGEIPIPIFCSNSSTSLQYIDLSNNSLTGE 191 (983)
Q Consensus 117 ~p~~~~~l~~L~~L~Ls~n-~l~~----~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~Ls~N~l~~~ 191 (983)
+...+...++|++|+|++| .|.. .+...+...++|++|+|++|.+.......+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~--------------------- 86 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA--------------------- 86 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH---------------------
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH---------------------
Confidence 3445667778888888887 7763 2344555567777777777777532111111
Q ss_pred CCCcccccccccceeecccCccccc----cchhhhccCCcceecc--cccccccccc---hhhhcCCCCccEEEcccccc
Q 042568 192 IPLKNECELRNLRFLLLWSNRLVGQ----VPQALANSSKLEWLDL--ESNMFSGELP---SEIISKMPQLQFLYLSYNDF 262 (983)
Q Consensus 192 ip~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~~~---~~~~~~l~~L~~L~Ls~N~l 262 (983)
..+...++|++|+|++|.|... +..++...++|++|+| ++|.|+..-. ...+...++|++|+|++|.+
T Consensus 87 ---~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 87 ---EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp ---HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred ---HHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 1122345666677777766543 3455566667777777 6677753211 11223334455555554443
No 418
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=7.3e-08 Score=100.73 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=42.9
Q ss_pred ccccccccccccccccc--CCCcccccccccceEEeCCCcccccccccccCCC--CccEEecCCccccCCcCc-------
Q 042568 474 KMDMVLAIDLSFNNLSG--SIPPQLGSCIALESLNLSGNSLEGLLPVSVGQLP--YLKQFDVSSNRLFGEIPQ------- 542 (983)
Q Consensus 474 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~ls~N~l~~~~p~------- 542 (983)
++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34555566666666654 3344555566666666666666643 2233333 566666666666655442
Q ss_pred cccCCCCcceEe
Q 042568 543 SFQASPTLKQLN 554 (983)
Q Consensus 543 ~~~~l~~L~~l~ 554 (983)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245556665554
No 419
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.28 E-value=3.2e-06 Score=91.47 Aligned_cols=136 Identities=16% Similarity=0.117 Sum_probs=95.9
Q ss_pred CCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCC---CccceeeEEe-cCCceeEEEeccc
Q 042568 672 SSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHR---NLIRIITICS-KPDFKALVLPLMS 747 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~ 747 (983)
.+.++.|....||+. ++.++||+.. .......+.+|.++++.+.+. .+.+++.++. ..+..++||||++
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~---~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~ 96 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK---SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQ 96 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES---SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCC
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC---CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccC
Confidence 356788999999998 6778898852 223457889999999999753 3556677764 4456789999999
Q ss_pred CcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhcc----------------------------------------
Q 042568 748 NGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHH---------------------------------------- 787 (983)
Q Consensus 748 ~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~---------------------------------------- 787 (983)
|.++.+... ..++......++.++++.|+.||+.
T Consensus 97 G~~l~~~~~------~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (306)
T 3tdw_A 97 GQILGEDGM------AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRD 170 (306)
T ss_dssp SEECHHHHH------TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred CeECchhhh------hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 988865321 1234445555556666666555532
Q ss_pred -----------------CCCCeEeecCCCCCeEeCC---CCCE-EEcccccccc
Q 042568 788 -----------------SPIKVVHCDLKPSNILLDE---DLTA-LVADFGIAKL 820 (983)
Q Consensus 788 -----------------~~~~ivH~Dikp~NiLl~~---~~~~-kl~Dfgla~~ 820 (983)
.+..++|+|++|.||+++. ++.+ .|+||+.+..
T Consensus 171 ~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 171 YLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2235799999999999997 4554 7999998864
No 420
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.26 E-value=3.7e-06 Score=89.82 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=60.8
Q ss_pred CCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCC---CccceeeEEecCCceeEEEecccC
Q 042568 672 SSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHR---NLIRIITICSKPDFKALVLPLMSN 748 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~~~~ 748 (983)
.+.|+.|.++.||++...+|+.++||+..... ......|.+|++.++.+++. .+.+++++. ..++||||+++
T Consensus 20 ~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~-~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g 94 (288)
T 3d1u_A 20 VAERGHSHRWHLYRVELADGTPLFVKALPDDA-PALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE 94 (288)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEEEECCTTC-CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred eeeeCCcchhheEEEEeCCCCeEEEEecCCCC-cchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEeccc
Confidence 56799999999999998889999999964322 22346789999999999865 577888764 36999999999
Q ss_pred cccc
Q 042568 749 GSLE 752 (983)
Q Consensus 749 gsL~ 752 (983)
+++.
T Consensus 95 ~~~~ 98 (288)
T 3d1u_A 95 RPPT 98 (288)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 421
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.21 E-value=3.5e-06 Score=89.48 Aligned_cols=134 Identities=18% Similarity=0.116 Sum_probs=97.2
Q ss_pred ccccCCcE-eEEEEEEC-CCcEEEEEEeecccCcchhHHHHHHHHHHHhcC-CCCccceeeEEecCCceeEEEecccCcc
Q 042568 674 LIGSGRFG-HVYKGVLQ-DNTRIAVKVLDLTTTGEITGSFKRECQILKRIR-HRNLIRIITICSKPDFKALVLPLMSNGS 750 (983)
Q Consensus 674 ~iG~G~~g-~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gs 750 (983)
.+..|..+ .||+.... ++..+++|+-... ....+.+|.++++.+. +--+.++++++...+..++|||+++|.+
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~----~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~ 106 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS----VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKT 106 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH----HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC----CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcc
Confidence 34556555 68998754 4667999986432 3466888999999884 3336788899988899999999999987
Q ss_pred cccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhcc-------------------------------------------
Q 042568 751 LENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHH------------------------------------------- 787 (983)
Q Consensus 751 L~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~------------------------------------------- 787 (983)
+.+..... ......+..++++.|+.||..
T Consensus 107 ~~~~~~~~--------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (272)
T 4gkh_A 107 AFQVLEEY--------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQ 178 (272)
T ss_dssp HHHHHHHC--------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHH
T ss_pred ccccccCC--------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHH
Confidence 76644321 122345667777777777741
Q ss_pred ------------CCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 788 ------------SPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 788 ------------~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
.+..++|+|+.+.||+++.++.+-|+||+.+.
T Consensus 179 ~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 179 VWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 11237899999999999987777799999875
No 422
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.11 E-value=8.4e-06 Score=90.42 Aligned_cols=82 Identities=7% Similarity=0.007 Sum_probs=57.9
Q ss_pred Ccc-ccCCcEeEEEEEEC-------CCcEEEEEEeecccC--cchhHHHHHHHHHHHhcC-C--CCccceeeEEecC---
Q 042568 673 SLI-GSGRFGHVYKGVLQ-------DNTRIAVKVLDLTTT--GEITGSFKRECQILKRIR-H--RNLIRIITICSKP--- 736 (983)
Q Consensus 673 ~~i-G~G~~g~Vy~~~~~-------~~~~vAvK~~~~~~~--~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~--- 736 (983)
+.| +.|....+|+.... +++.+++|+...... ......+.+|+++++.+. + -.+.+++.++...
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 557 88989999998764 266789998643320 001256788999999884 3 3567788887655
Q ss_pred CceeEEEecccCcccccc
Q 042568 737 DFKALVLPLMSNGSLENH 754 (983)
Q Consensus 737 ~~~~lv~e~~~~gsL~~~ 754 (983)
+..++||||++|..+.+.
T Consensus 106 g~~~~v~e~l~G~~l~~~ 123 (357)
T 3ats_A 106 GTPFFLMDYVEGVVPPDV 123 (357)
T ss_dssp SSCEEEEECCCCBCCCBT
T ss_pred CCceEEEEecCCCChhhc
Confidence 356899999999887653
No 423
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.09 E-value=1.1e-05 Score=89.39 Aligned_cols=145 Identities=10% Similarity=0.119 Sum_probs=91.3
Q ss_pred CCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCC--ccceeeEEecC-CceeEEEeccc
Q 042568 671 PSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRN--LIRIITICSKP-DFKALVLPLMS 747 (983)
Q Consensus 671 ~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~-~~~~lv~e~~~ 747 (983)
..+.++.|....+|+... +++.+++|+.... ..+.+|+.+++.+.... +.++++++... +..++||||++
T Consensus 45 ~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~------~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~ 117 (362)
T 3ovc_A 45 DLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA------DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQ 117 (362)
T ss_dssp EEEEEEECSSEEEEEEEE-TTEEEEEEEESCC------HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCC
T ss_pred eEEECCCCCcceEEEEEE-CCcEEEEEeCCch------hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecC
Confidence 356688999999999886 4788999987321 35889999999986543 45677776654 56799999999
Q ss_pred Cccccccc------------------ccccCcC--------C-----CCCHHHH---------------------HHHHH
Q 042568 748 NGSLENHL------------------YPSHGLS--------H-----GLDLIQL---------------------VKICS 775 (983)
Q Consensus 748 ~gsL~~~l------------------~~~~~~~--------~-----~l~~~~~---------------------~~i~~ 775 (983)
|.++.+.- +...... . .-.|... .....
T Consensus 118 G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (362)
T 3ovc_A 118 GVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVAQ 197 (362)
T ss_dssp SEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccchH
Confidence 87765320 0000000 0 0011111 01111
Q ss_pred HHHHHHHHHhcc-CCCCeEeecCCCCCeEeCCCCCEEEcccccccccc
Q 042568 776 DVAEGVAYLHHH-SPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVK 822 (983)
Q Consensus 776 ~ia~aL~~LH~~-~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~ 822 (983)
.+....+++... .++.++|+|+.|.||++++++.+.|+||+.+..-.
T Consensus 198 ~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~gd 245 (362)
T 3ovc_A 198 ALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFGD 245 (362)
T ss_dssp HHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEEC
T ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccCC
Confidence 122222233211 11358999999999999887778899999987543
No 424
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=7.1e-06 Score=79.31 Aligned_cols=62 Identities=8% Similarity=0.100 Sum_probs=43.0
Q ss_pred CCCcEEeCcCCcCCCCCccccCCCCCCCEEeccCcc-CCCCchhhhccc----ccccEEeccCcc-cc
Q 042568 101 SSLIVLDLSKNFFQGHIPAELGSLIRLKQLSLSWNS-LQGKIPSQLGSL----HQLEYLDLGNNK-LV 162 (983)
Q Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~L----~~L~~L~Ls~N~-l~ 162 (983)
..|++|||++|.++..--..+..+++|++|+|++|. |++.--..++.+ ++|++|+|++|. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 467788888877776655667778888888888874 665444555554 367888887774 55
No 425
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.72 E-value=7.4e-05 Score=82.13 Aligned_cols=141 Identities=13% Similarity=0.080 Sum_probs=80.9
Q ss_pred CccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCC--CCccceee------EEecCCceeEEEe
Q 042568 673 SLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRH--RNLIRIIT------ICSKPDFKALVLP 744 (983)
Q Consensus 673 ~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~------~~~~~~~~~lv~e 744 (983)
+.|+.|..+.||++...+| .+++|+.... ..++..|+++++.+.. -.+.+++. +....+..+++||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~-----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~ 111 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP-----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD 111 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC-----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC-----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence 3466677899999987654 5899988642 2344556666666631 12333333 1123556789999
Q ss_pred cccCccccc--------------ccccccC-c--C-------CCCCHHHH------------------------------
Q 042568 745 LMSNGSLEN--------------HLYPSHG-L--S-------HGLDLIQL------------------------------ 770 (983)
Q Consensus 745 ~~~~gsL~~--------------~l~~~~~-~--~-------~~l~~~~~------------------------------ 770 (983)
|++|..+.. .++.... . . ..-.|...
T Consensus 112 ~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 191 (346)
T 2q83_A 112 WIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQE 191 (346)
T ss_dssp CCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred eecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 999876531 0111000 0 0 01123211
Q ss_pred -HHHHHHHHHHHHHHhc----------cCCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 771 -VKICSDVAEGVAYLHH----------HSPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 771 -~~i~~~ia~aL~~LH~----------~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
..+..++.+++++|++ ..+..++|+|+++.||+++.++.+.|+||+.+.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 192 IDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 1111224445666653 123469999999999999888899999999875
No 426
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.72 E-value=0.0001 Score=82.81 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=50.8
Q ss_pred CCccccCCcEeEEEEEEC-CCcEEEEEEeecccC------cchhHHHHHHHHHHHhcCC--CC-ccceeeEEecCCceeE
Q 042568 672 SSLIGSGRFGHVYKGVLQ-DNTRIAVKVLDLTTT------GEITGSFKRECQILKRIRH--RN-LIRIITICSKPDFKAL 741 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~-~~~~vAvK~~~~~~~------~~~~~~~~~E~~~l~~l~h--~n-iv~l~~~~~~~~~~~l 741 (983)
.+.+|.|..+.||++... +++.|+||....... .....++..|.++++.+.. +. +.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 457899999999999754 467899997642211 1234567889999998843 33 3455544 3455689
Q ss_pred EEecccCc
Q 042568 742 VLPLMSNG 749 (983)
Q Consensus 742 v~e~~~~g 749 (983)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999864
No 427
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=1.1e-05 Score=78.02 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=70.5
Q ss_pred CeEEEEEcccCCcccccccccccCCCCcEEeCcCC-cCCCCCccccCCC----CCCCEEeccCcc-CCCCchhhhccccc
Q 042568 77 NKVVELDLSARSIYGTISPALANLSSLIVLDLSKN-FFQGHIPAELGSL----IRLKQLSLSWNS-LQGKIPSQLGSLHQ 150 (983)
Q Consensus 77 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l----~~L~~L~Ls~n~-l~~~~p~~~~~L~~ 150 (983)
-+++.||++++.++..--..+.++++|++|+|++| .+++.--..++.+ ++|++|+|++|. |+..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 36999999999988766677899999999999999 4886555566665 479999999985 88766677889999
Q ss_pred ccEEeccCcc
Q 042568 151 LEYLDLGNNK 160 (983)
Q Consensus 151 L~~L~Ls~N~ 160 (983)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 428
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.69 E-value=9.5e-06 Score=79.97 Aligned_cols=72 Identities=11% Similarity=0.121 Sum_probs=48.0
Q ss_pred ccccccccCCCCcEEeCcCC-cCCCC----CccccCCCCCCCEEeccCccCCC----CchhhhcccccccEEeccCcccc
Q 042568 92 TISPALANLSSLIVLDLSKN-FFQGH----IPAELGSLIRLKQLSLSWNSLQG----KIPSQLGSLHQLEYLDLGNNKLV 162 (983)
Q Consensus 92 ~~~~~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~L~~L~~L~Ls~N~l~ 162 (983)
.+...+.+-+.|++|+|++| .|... +-+.+..-+.|++|+|++|.|.. .+...+..-+.|++|+|++|.|.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34445666778888888875 66532 34456666778888888888773 34444555567777777777776
Q ss_pred c
Q 042568 163 G 163 (983)
Q Consensus 163 ~ 163 (983)
.
T Consensus 112 ~ 112 (197)
T 1pgv_A 112 P 112 (197)
T ss_dssp H
T ss_pred H
Confidence 3
No 429
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.61 E-value=0.00027 Score=75.93 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=93.0
Q ss_pred CCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcC---CCCccceeeEEecCCceeEEEecccC
Q 042568 672 SSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIR---HRNLIRIITICSKPDFKALVLPLMSN 748 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~ 748 (983)
.+.|+.|....+|+.... ++.+++|+.... ....+.+|.+.++.+. ...+.++++++...+..++||||+++
T Consensus 41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~----~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G 115 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLINDE-VQTVFVKINERS----YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK 115 (312)
T ss_dssp EEEECCSSSSEEEEEESS-SCEEEEEEEEGG----GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred eEEeCCccceeeeEEEEC-CCeEEEEeCCcc----cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence 456899999999999864 678899987532 2567889999999884 35688899988888889999999998
Q ss_pred ccccc-----------ccccccC---c---------------CCCCCHHHHH---HHHH----------------HHHHH
Q 042568 749 GSLEN-----------HLYPSHG---L---------------SHGLDLIQLV---KICS----------------DVAEG 780 (983)
Q Consensus 749 gsL~~-----------~l~~~~~---~---------------~~~l~~~~~~---~i~~----------------~ia~a 780 (983)
..+.. .++.... . ...-+|.... ++.. .+++.
T Consensus 116 ~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~ 195 (312)
T 3jr1_A 116 SKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQI 195 (312)
T ss_dssp CCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 76532 1221110 0 0012455432 1111 11111
Q ss_pred -HHHHhc-cCCCCeEeecCCCCCeEeCCCCCEEEcccc
Q 042568 781 -VAYLHH-HSPIKVVHCDLKPSNILLDEDLTALVADFG 816 (983)
Q Consensus 781 -L~~LH~-~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfg 816 (983)
...|.. ..++.++|+|+.+.|++++.++ +.|.||+
T Consensus 196 l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 196 VADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 223422 2345799999999999999887 8899984
No 430
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.36 E-value=0.00048 Score=73.49 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=56.2
Q ss_pred CCCCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCC---CccceeeEEecCCceeEEEecc
Q 042568 670 CPSSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHR---NLIRIITICSKPDFKALVLPLM 746 (983)
Q Consensus 670 ~~~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~~ 746 (983)
...+.+|.|..+.||+....+|+.|+||+..... ......|.+|++.|+.+... -+.+++++. ..++||||+
T Consensus 18 ~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~-~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~l 92 (288)
T 3f7w_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDA-PALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWV 92 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTC-CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECC
T ss_pred EEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCC-cchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEee
Confidence 3456789999999999999999999999865332 22345688999999998422 344555543 348899999
Q ss_pred cCccc
Q 042568 747 SNGSL 751 (983)
Q Consensus 747 ~~gsL 751 (983)
+++..
T Consensus 93 ~~~~~ 97 (288)
T 3f7w_A 93 DERPP 97 (288)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87654
No 431
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.27 E-value=0.00098 Score=72.32 Aligned_cols=160 Identities=13% Similarity=0.136 Sum_probs=89.7
Q ss_pred CCCHHHHHHHhCCCCCC-----CccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCC--ccc
Q 042568 656 RVSYKQLIEATGGFCPS-----SLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRN--LIR 728 (983)
Q Consensus 656 ~~~~~~l~~~~~~f~~~-----~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~ 728 (983)
.++.+++......|... +.|+.|....+|+....+| .+++|+..... ....+..|+++++.+.... +.+
T Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~---~~~~l~~e~~~l~~L~~~g~~vP~ 81 (322)
T 2ppq_A 6 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV---EKNDLPFFLGLMQHLAAKGLSCPL 81 (322)
T ss_dssp CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC------CCHHHHHHHHHHHHHHTTCCCCC
T ss_pred cCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC---CHHHHHHHHHHHHHHHHCCCCCCc
Confidence 35556666655556542 3466788899999987655 68899885421 2345667888888774222 233
Q ss_pred eeeE------EecCCceeEEEecccCcccccc--------------ccccc-CcCCC----C---CHHHHHH--------
Q 042568 729 IITI------CSKPDFKALVLPLMSNGSLENH--------------LYPSH-GLSHG----L---DLIQLVK-------- 772 (983)
Q Consensus 729 l~~~------~~~~~~~~lv~e~~~~gsL~~~--------------l~~~~-~~~~~----l---~~~~~~~-------- 772 (983)
++.. ....+..+++++|++|..+... ++... ....+ . .|.....
T Consensus 82 ~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 161 (322)
T 2ppq_A 82 PLPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADE 161 (322)
T ss_dssp BCCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGG
T ss_pred ccCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHh
Confidence 3321 1123456899999998765321 11100 00000 1 1222110
Q ss_pred ----HHHHHHHHHHHHhcc----CCCCeEeecCCCCCeEeCCCCCEEEccccccc
Q 042568 773 ----ICSDVAEGVAYLHHH----SPIKVVHCDLKPSNILLDEDLTALVADFGIAK 819 (983)
Q Consensus 773 ----i~~~ia~aL~~LH~~----~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~ 819 (983)
+...+.+.+++++.. .+..++|+|+.+.||+++++..+.|+||+.+.
T Consensus 162 ~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 162 VEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp TSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 011234445555421 23468999999999999987666899999875
No 432
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.23 E-value=0.00089 Score=75.69 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=48.7
Q ss_pred CCeEeecCCCCCeEeCCCCCEEEccccccccccCCcccccccCCCCccccccCcccc--ccccccccccCCC---CCCcc
Q 042568 790 IKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCG--SVGYIAPEYGMGK---RASTH 864 (983)
Q Consensus 790 ~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~---~~~~k 864 (983)
..++|+|++|.|||++.++ ++++||+.+..-.+..+- ....+ ...|.+|+..... .....
T Consensus 232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dl--------------a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 296 (420)
T 2pyw_A 232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDI--------------GAYLGNLILAFFAQDGHATQENDRKEYK 296 (420)
T ss_dssp CEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHH--------------HHHHHHHHHHHHHGGGGCCSSCCSHHHH
T ss_pred CeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHH--------------HHHHHHHHHHHHhcccccccccchHHHH
Confidence 3599999999999999876 999999998754321110 00011 1346666654321 11233
Q ss_pred chhHHHHHHHHHHHhCC
Q 042568 865 GDVYSFGVLLLEIVTGR 881 (983)
Q Consensus 865 ~Dv~SlG~il~elltg~ 881 (983)
.+++.....+|+.++++
T Consensus 297 ~~~~~~~~~~~~~y~~~ 313 (420)
T 2pyw_A 297 QWILRTIEQTWNLFNKR 313 (420)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56668888888887764
No 433
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.21 E-value=0.0012 Score=70.94 Aligned_cols=72 Identities=8% Similarity=0.097 Sum_probs=47.4
Q ss_pred CCccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCc-cceeeEEecCCceeEEEecc-cCc
Q 042568 672 SSLIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNL-IRIITICSKPDFKALVLPLM-SNG 749 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~g 749 (983)
.+.|+.|....+|+. +.+++|+....... .....+|+.+++.+....+ .++++++ ++..++++||+ ++.
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~--~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~ 93 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE--YINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQ 93 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC------CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccc--eeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCc
Confidence 677899999999999 56889987543211 1234568888888853333 3555543 44458899999 665
Q ss_pred ccc
Q 042568 750 SLE 752 (983)
Q Consensus 750 sL~ 752 (983)
++.
T Consensus 94 ~l~ 96 (301)
T 3dxq_A 94 TMS 96 (301)
T ss_dssp ECC
T ss_pred cCC
Confidence 553
No 434
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.20 E-value=0.00014 Score=71.65 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=30.6
Q ss_pred cccCCCCCCCEEeccCc-cCCC----CchhhhcccccccEEeccCccccc
Q 042568 119 AELGSLIRLKQLSLSWN-SLQG----KIPSQLGSLHQLEYLDLGNNKLVG 163 (983)
Q Consensus 119 ~~~~~l~~L~~L~Ls~n-~l~~----~~p~~~~~L~~L~~L~Ls~N~l~~ 163 (983)
..+.+-+.|++|+|++| .|.. .+...+..-+.|++|+|++|+|..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence 34456677888888875 7753 244556666778888888887763
No 435
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=97.02 E-value=0.0023 Score=72.31 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=51.7
Q ss_pred CCccccCCcEeEEEEEECC--------CcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCc-cceeeEEecCCceeEE
Q 042568 672 SSLIGSGRFGHVYKGVLQD--------NTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNL-IRIITICSKPDFKALV 742 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~~--------~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv 742 (983)
.+.|+.|....||++...+ ++.+++|+..... ....+.+|..+++.+...++ .++++.+.. .+|
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~---~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v 150 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE---TESHLVAESVIFTLLSERHLGPKLYGIFSG----GRL 150 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC---CHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC---cHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEE
Confidence 3567888899999998753 4789999884321 12456689999998854344 566766542 489
Q ss_pred EecccCcccc
Q 042568 743 LPLMSNGSLE 752 (983)
Q Consensus 743 ~e~~~~gsL~ 752 (983)
+||++|.++.
T Consensus 151 ~e~l~G~~l~ 160 (429)
T 1nw1_A 151 EEYIPSRPLS 160 (429)
T ss_dssp ECCCCEEECC
T ss_pred EEEeCCcccC
Confidence 9999876654
No 436
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=97.00 E-value=0.0026 Score=70.19 Aligned_cols=143 Identities=12% Similarity=0.196 Sum_probs=85.4
Q ss_pred CCccccCCcEeEEEEEEC--------CCcEEEEEEeecccCcchhHHHHHHHHHHHhcC-CCCccceeeEEecCCceeEE
Q 042568 672 SSLIGSGRFGHVYKGVLQ--------DNTRIAVKVLDLTTTGEITGSFKRECQILKRIR-HRNLIRIITICSKPDFKALV 742 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~--------~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv 742 (983)
.+.+..|-...+|++... +++.+++|+..... .......+|.++++.+. +.-..++++++.. .+|
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~--~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v 128 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL--QGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRL 128 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC-----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEE
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc--chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccE
Confidence 356777888999999864 24789999863221 13456678999999884 3333566666543 389
Q ss_pred EecccCcccccc-c----------------cccc-CcCCCCC--HHHHHHHHHHHHH-------------------HHHH
Q 042568 743 LPLMSNGSLENH-L----------------YPSH-GLSHGLD--LIQLVKICSDVAE-------------------GVAY 783 (983)
Q Consensus 743 ~e~~~~gsL~~~-l----------------~~~~-~~~~~l~--~~~~~~i~~~ia~-------------------aL~~ 783 (983)
|||++|.++..- + +... ...+... |.++.++..++.. .+++
T Consensus 129 ~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (379)
T 3feg_A 129 EQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGN 208 (379)
T ss_dssp EECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHH
T ss_pred EEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHH
Confidence 999998766421 1 1100 0111122 4455555544422 2233
Q ss_pred Hh----c-cCCCCeEeecCCCCCeEeCCC----CCEEEcccccccc
Q 042568 784 LH----H-HSPIKVVHCDLKPSNILLDED----LTALVADFGIAKL 820 (983)
Q Consensus 784 LH----~-~~~~~ivH~Dikp~NiLl~~~----~~~kl~Dfgla~~ 820 (983)
|. . ..+..++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 209 L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 209 LRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 32 2 223468999999999999876 7899999998864
No 437
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.95 E-value=0.0075 Score=65.43 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=82.3
Q ss_pred ccccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCC--ccceeeE-----EecCCceeEEEecc
Q 042568 674 LIGSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRN--LIRIITI-----CSKPDFKALVLPLM 746 (983)
Q Consensus 674 ~iG~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~-----~~~~~~~~lv~e~~ 746 (983)
.++ |....||+....+|+.+++|....... ....+..|.++++.+.... +.+++.. ....+..++++||+
T Consensus 33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~--~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 33 PLN-SYENRVYQFQDEDRRRFVVKFYRPERW--TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEC-CSSSEEEEECCTTCCCEEEEEECTTTS--CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred eec-CcccceEEEEcCCCCEEEEEEcCCCCC--CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence 466 888899998877777899999853321 2456778888888884222 3444442 11234557899999
Q ss_pred cCcccccc--------------ccccc---C--cCCCCCHHHH----------------------HHHHHHHHHHHHHHh
Q 042568 747 SNGSLENH--------------LYPSH---G--LSHGLDLIQL----------------------VKICSDVAEGVAYLH 785 (983)
Q Consensus 747 ~~gsL~~~--------------l~~~~---~--~~~~l~~~~~----------------------~~i~~~ia~aL~~LH 785 (983)
+|..+... ++... . .....++... ...+..++..+.-..
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 98665320 11000 0 0111222211 011111222222221
Q ss_pred c-cCCCCeEeecCCCCCeEeCCCCCEEEcccccccc
Q 042568 786 H-HSPIKVVHCDLKPSNILLDEDLTALVADFGIAKL 820 (983)
Q Consensus 786 ~-~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~ 820 (983)
. ..+..++|+|+++.||+++ + .+.|+||+.+..
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 1 1233588999999999999 4 899999998764
No 438
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.93 E-value=0.002 Score=70.29 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=73.9
Q ss_pred CccccCCcEe-EEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCCC--CccceeeEEecCCceeEEEecccCc
Q 042568 673 SLIGSGRFGH-VYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRHR--NLIRIITICSKPDFKALVLPLMSNG 749 (983)
Q Consensus 673 ~~iG~G~~g~-Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l~~~~~~~~~~~lv~e~~~~g 749 (983)
+.|+.|+... +|+....+++.+++|...... ...+..|+++++.+... .+.+++.+.... -+++||++.+.
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~----~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~--g~ll~e~l~~~ 97 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE----GGDTQPFVDLAQYLRNLDISAPEIYAEEHAR--GLLLIEDLGDA 97 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTT----TCCSHHHHHHHHHHHHTTCBCCCEEEEETTT--TEEEECCCCSC
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCC----CccccHHHHHHHHHHhCCCCCCceeeecCCC--CEEEEeeCCCc
Confidence 4565565554 677765446777777653321 13345677887777432 345666664333 37899999776
Q ss_pred cccccccccc---------------------Cc-CCCCCHHHHH-------HH-------------HHHHHHHHHHHh--
Q 042568 750 SLENHLYPSH---------------------GL-SHGLDLIQLV-------KI-------------CSDVAEGVAYLH-- 785 (983)
Q Consensus 750 sL~~~l~~~~---------------------~~-~~~l~~~~~~-------~i-------------~~~ia~aL~~LH-- 785 (983)
++.+++.... .. ...++..... .+ ...+.+.++.+.
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~ 177 (333)
T 3csv_A 98 LFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSA 177 (333)
T ss_dssp BHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 5543332110 00 0112211110 00 001112222221
Q ss_pred -ccCCCCeEeecCCCCCeEeCCC----CCEEEccccccccc
Q 042568 786 -HHSPIKVVHCDLKPSNILLDED----LTALVADFGIAKLV 821 (983)
Q Consensus 786 -~~~~~~ivH~Dikp~NiLl~~~----~~~kl~Dfgla~~~ 821 (983)
...+..++|||+.+.||+++.+ +.+.|+||+.+..-
T Consensus 178 ~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 178 QLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp HCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred cccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 1223469999999999999875 67899999988743
No 439
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.68 E-value=0.0036 Score=69.26 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=46.1
Q ss_pred CCccccCCcEeEEEEEECC---------CcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCC-ccceeeEEecCCceeE
Q 042568 672 SSLIGSGRFGHVYKGVLQD---------NTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRN-LIRIITICSKPDFKAL 741 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~~---------~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~l 741 (983)
.+.++.|....+|+....+ ++.+++|+...... .......|.++++.+...+ ..++++... -++
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~--~~~~~~~E~~~l~~L~~~g~~P~~~~~~~----~~~ 111 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD--ELYNTISEFEVYKTMSKYKIAPQLLNTFN----GGR 111 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG--GTSCHHHHHHHHHHHHHTTSSCCEEEEET----TEE
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc--ceecHHHHHHHHHHHHhcCCCCceEEecC----CcE
Confidence 3457788889999998764 26788988743221 1123467888988885434 346665542 378
Q ss_pred EEecccCccc
Q 042568 742 VLPLMSNGSL 751 (983)
Q Consensus 742 v~e~~~~gsL 751 (983)
||||++|.++
T Consensus 112 v~e~i~G~~l 121 (369)
T 3c5i_A 112 IEEWLYGDPL 121 (369)
T ss_dssp EEECCCSEEC
T ss_pred EEEEecCCcC
Confidence 9999998655
No 440
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.63 E-value=0.01 Score=67.18 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=49.8
Q ss_pred CCccccCCcEeEEEEEECC-CcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCCc-cceeeEEecCCceeEEEecccCc
Q 042568 672 SSLIGSGRFGHVYKGVLQD-NTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRNL-IRIITICSKPDFKALVLPLMSNG 749 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~~-~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~g 749 (983)
.+.|+.|-...+|++...+ +..+++|+...... . .-...+|..+++.+...++ .++++++. + ..|+||++|.
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~-~-~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~ 186 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTD-E-IINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGY 186 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CC-S-CSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChh-h-hcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCc
Confidence 3568888899999999765 47788998743221 1 1123689999999965555 46676663 2 4699999986
Q ss_pred ccc
Q 042568 750 SLE 752 (983)
Q Consensus 750 sL~ 752 (983)
++.
T Consensus 187 ~l~ 189 (458)
T 2qg7_A 187 ALS 189 (458)
T ss_dssp ECC
T ss_pred cCC
Confidence 664
No 441
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.49 E-value=0.013 Score=63.86 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=44.0
Q ss_pred ccCCcEeEEEEEECCCcEEEEEEeecccCcchhHHHHHHHHHHHhcCC---CCccceeeE------EecCCceeEEEecc
Q 042568 676 GSGRFGHVYKGVLQDNTRIAVKVLDLTTTGEITGSFKRECQILKRIRH---RNLIRIITI------CSKPDFKALVLPLM 746 (983)
Q Consensus 676 G~G~~g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~l~~~------~~~~~~~~lv~e~~ 746 (983)
|.|....||+....+| .+++|+...... ..|+++++.+.. |.+.+++.. ....+..+++|+|+
T Consensus 32 G~g~~N~vy~v~~~~g-~~vLK~~~~~~~-------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i 103 (339)
T 3i1a_A 32 GADTNAFAYQADSESK-SYFIKLKYGYHD-------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFI 103 (339)
T ss_dssp TSCSSCEEEEEECSSC-EEEEEEEECSSC-------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECC
T ss_pred cCccccceEEEEeCCC-CEEEEEecCccc-------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEecc
Confidence 3344689999987766 899998754321 356666666632 224444432 23346678999999
Q ss_pred cCccc
Q 042568 747 SNGSL 751 (983)
Q Consensus 747 ~~gsL 751 (983)
+|..+
T Consensus 104 ~G~~~ 108 (339)
T 3i1a_A 104 HAPNG 108 (339)
T ss_dssp CCCBT
T ss_pred CCCcC
Confidence 98766
No 442
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.39 E-value=0.0046 Score=56.73 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=35.5
Q ss_pred eEEeCCCccc-ccccccccCCCCccEEecCCccccCCcCccccCCCCcceEeccCCcccc
Q 042568 504 SLNLSGNSLE-GLLPVSVGQLPYLKQFDVSSNRLFGEIPQSFQASPTLKQLNFSFNKFSG 562 (983)
Q Consensus 504 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 562 (983)
.++.+++.|+ ..+|..+ .++|+.|+|++|+|+..-+..|..+++|+.|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5566666665 2344332 2357777777777775445567777777777777776653
No 443
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.33 E-value=0.0051 Score=56.46 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=15.5
Q ss_pred cceeecccCccccccchhhhccCCcceeccccccc
Q 042568 203 LRFLLLWSNRLVGQVPQALANSSKLEWLDLESNMF 237 (983)
Q Consensus 203 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 237 (983)
|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433334444444444444444444
No 444
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.13 E-value=0.014 Score=57.50 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=66.8
Q ss_pred cccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCCeEeCCCCCEEEccccccccccCCcccc
Q 042568 749 GSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLVKGIDESV 828 (983)
Q Consensus 749 gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~~~~~~~~ 828 (983)
-||.+.|... ..+++++++|.++.|.+++|.-.-.+.. + ..+=+.|..|++..+|.+...+ +.+.
T Consensus 33 vSL~eIL~~~---~~PlsEEqaWALc~Qc~~~L~~~~~~~~-~-~~~i~~~~~i~l~~dG~V~f~~-~~s~--------- 97 (229)
T 2yle_A 33 LSLEEILRLY---NQPINEEQAWAVCYQCCGSLRAAARRRQ-P-RHRVRSAAQIRVWRDGAVTLAP-AADD--------- 97 (229)
T ss_dssp EEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCCSGGGEEEETTSCEEECC-C------------
T ss_pred ccHHHHHHHc---CCCcCHHHHHHHHHHHHHHHHhhhhccc-C-CceecCCcceEEecCCceeccc-cccc---------
Confidence 3777777654 5689999999999999999877621100 1 1222457889999999988764 2111
Q ss_pred cccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCCCC
Q 042568 829 NCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGRRP 883 (983)
Q Consensus 829 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~~p 883 (983)
.....+.|||... ...+.+.-|||+|+++|.-+--..|
T Consensus 98 ----------------~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 ----------------AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp -------------------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred ----------------ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 0122455888764 3557888999999999999975555
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=95.90 E-value=0.037 Score=61.17 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=85.2
Q ss_pred CCccccCCcEeEEEEEECC--------CcEEEEEEeecccCc----------chh-------HHHHHHHHHHHhcC-CCC
Q 042568 672 SSLIGSGRFGHVYKGVLQD--------NTRIAVKVLDLTTTG----------EIT-------GSFKRECQILKRIR-HRN 725 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~~--------~~~vAvK~~~~~~~~----------~~~-------~~~~~E~~~l~~l~-h~n 725 (983)
.+.|..|-...+|++...+ .+.|.+++.-..... ..+ +....|.++++.+. +.-
T Consensus 57 v~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi 136 (401)
T 3f2s_A 57 ISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSL 136 (401)
T ss_dssp EEEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTS
T ss_pred EEEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCC
Confidence 3457778889999998754 367888887432210 001 12335888988885 444
Q ss_pred ccceeeEEecCCceeEEEecccCccccccc-c----------------ccc-CcCCCCC--HHHHHHHHHHHH-------
Q 042568 726 LIRIITICSKPDFKALVLPLMSNGSLENHL-Y----------------PSH-GLSHGLD--LIQLVKICSDVA------- 778 (983)
Q Consensus 726 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l-~----------------~~~-~~~~~l~--~~~~~~i~~~ia------- 778 (983)
..++++++.. .+|+||++|-+|..-- . ... ....... +..+.++..++.
T Consensus 137 ~Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~ 212 (401)
T 3f2s_A 137 GPKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEE 212 (401)
T ss_dssp SCCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSH
T ss_pred CCeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcch
Confidence 5567776643 3899999976664211 0 000 0112222 334444443332
Q ss_pred ---------------HHHH----HHhc-cCCCCeEeecCCCCCeEeCCC------CCEEEcccccccc
Q 042568 779 ---------------EGVA----YLHH-HSPIKVVHCDLKPSNILLDED------LTALVADFGIAKL 820 (983)
Q Consensus 779 ---------------~aL~----~LH~-~~~~~ivH~Dikp~NiLl~~~------~~~kl~Dfgla~~ 820 (983)
+.+. ++.. ..+..++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 213 ~~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 213 SRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 1122 2322 223358899999999999876 7899999998763
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=95.28 E-value=0.088 Score=58.76 Aligned_cols=143 Identities=14% Similarity=0.150 Sum_probs=86.7
Q ss_pred CCccccCCcEeEEEEEECC--------CcEEEEEEeecccCcchhHHHHHHHHHHHhcCCCC-ccceeeEEecCCceeEE
Q 042568 672 SSLIGSGRFGHVYKGVLQD--------NTRIAVKVLDLTTTGEITGSFKRECQILKRIRHRN-LIRIITICSKPDFKALV 742 (983)
Q Consensus 672 ~~~iG~G~~g~Vy~~~~~~--------~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lv 742 (983)
.+.+..|-...+|+....+ ++.+++|+..... +..-...+|.++++.+...+ ..++++.+. -+.|
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t--~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I 148 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV--GKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRI 148 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC---CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc--chhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEE
Confidence 3457778889999998763 5789999864322 11223467999998885333 345565442 3789
Q ss_pred EecccCcccccc-cc----------------cccC---------cCCCCCHHHHHHHHHHHH------------------
Q 042568 743 LPLMSNGSLENH-LY----------------PSHG---------LSHGLDLIQLVKICSDVA------------------ 778 (983)
Q Consensus 743 ~e~~~~gsL~~~-l~----------------~~~~---------~~~~l~~~~~~~i~~~ia------------------ 778 (983)
+||++|.++..- +. .... ...+.-|..+.++..++-
T Consensus 149 ~efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l 228 (424)
T 3mes_A 149 EEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSKI 228 (424)
T ss_dssp EECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHH
T ss_pred EEEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhccccHHHH
Confidence 999998765321 10 0000 011122444444443322
Q ss_pred -HHHHHHh---------------------ccCCCCeEeecCCCCCeEeCCCCCEEEccccccccc
Q 042568 779 -EGVAYLH---------------------HHSPIKVVHCDLKPSNILLDEDLTALVADFGIAKLV 821 (983)
Q Consensus 779 -~aL~~LH---------------------~~~~~~ivH~Dikp~NiLl~~~~~~kl~Dfgla~~~ 821 (983)
+.+.+|. ...+..++|+|+.+.||+ +.++.+.++||..|..-
T Consensus 229 ~~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~~ 292 (424)
T 3mes_A 229 LEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSAIN 292 (424)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCEEE
T ss_pred HHHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCCcC
Confidence 2233332 112345889999999999 88889999999988743
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=92.86 E-value=0.055 Score=60.33 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=25.4
Q ss_pred CeEeecCCCCCeEe------CCCCCEEEcccccccc
Q 042568 791 KVVHCDLKPSNILL------DEDLTALVADFGIAKL 820 (983)
Q Consensus 791 ~ivH~Dikp~NiLl------~~~~~~kl~Dfgla~~ 820 (983)
.++|+|+.+.||++ +++..++++||..|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 36799999999999 4567899999998864
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=84.43 E-value=3.6 Score=40.53 Aligned_cols=123 Identities=10% Similarity=0.093 Sum_probs=82.1
Q ss_pred CCCCccceeeEEecCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCeEeecCCCCC
Q 042568 722 RHRNLIRIITICSKPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVAYLHHHSPIKVVHCDLKPSN 801 (983)
Q Consensus 722 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~ivH~Dikp~N 801 (983)
.||+.+.. .+-...+...+.|+.-+ ....+-. -+.++...+++++.+|+....+++.. +|-=+.|+|
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~--~~~~f~~-----ik~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~N 109 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDIND--NHTPFDN-----IKSFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDE 109 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCT--TSEEGGG-----GGGSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGG
T ss_pred cCCcccce-EEEEcccEEEEEEEcCc--ccCCHHH-----HHhcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecce
Confidence 57888866 45555565555555443 2222222 23478889999999999988666543 677899999
Q ss_pred eEeCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhCC
Q 042568 802 ILLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTGR 881 (983)
Q Consensus 802 iLl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg~ 881 (983)
|+++.++.+++.=.|+...+ +|. ..++..=.-.+=+++..+++++
T Consensus 110 L~f~~~~~p~i~~RGik~~l------------------------------~P~-----~~~ee~fL~qyKAliiall~~K 154 (215)
T 4ann_A 110 LFFTRDGLPIAKTRGLQNVV------------------------------DPL-----PVSEAEFLTRYKALVICAFNEK 154 (215)
T ss_dssp EEECTTSCEEESCCEETTTB------------------------------SCC-----CCCHHHHHHHHHHHHHHHHCTT
T ss_pred EEEcCCCCEEEEEccCccCC------------------------------CCC-----CCCHHHHHHHHHHHHHHHHcCC
Confidence 99999999999877764433 222 1122223445778899999999
Q ss_pred CCCCcccCCCC
Q 042568 882 RPTDVLFHDGS 892 (983)
Q Consensus 882 ~p~~~~~~~~~ 892 (983)
..|+....+..
T Consensus 155 ~~Fe~l~~G~l 165 (215)
T 4ann_A 155 QSFDALVEGNL 165 (215)
T ss_dssp CCHHHHHHSCG
T ss_pred CCHHHHHcChH
Confidence 99876554443
No 449
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=83.86 E-value=1.6 Score=30.69 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=4.1
Q ss_pred HHHhhhhhhc
Q 042568 620 FGNFLVLRSK 629 (983)
Q Consensus 620 ~~~~~~~~~~ 629 (983)
+.+++++|++
T Consensus 29 ~~~~~~~RRr 38 (44)
T 2ks1_B 29 LGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3334444443
No 450
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=78.68 E-value=4.4 Score=28.41 Aligned_cols=10 Identities=20% Similarity=0.192 Sum_probs=4.3
Q ss_pred HHHhhhhhhc
Q 042568 620 FGNFLVLRSK 629 (983)
Q Consensus 620 ~~~~~~~~~~ 629 (983)
..+++++|+|
T Consensus 28 ~~~~~~~RRR 37 (44)
T 2l2t_A 28 LTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3344444444
No 451
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=73.59 E-value=0.5 Score=53.43 Aligned_cols=61 Identities=7% Similarity=0.025 Sum_probs=17.8
Q ss_pred CCCccccCCcEeEEEEEECC-CcEEEE------EEeeccc-CcchhHHHHHHHHHHHhcCCCCccceeeEEe
Q 042568 671 PSSLIGSGRFGHVYKGVLQD-NTRIAV------KVLDLTT-TGEITGSFKRECQILKRIRHRNLIRIITICS 734 (983)
Q Consensus 671 ~~~~iG~G~~g~Vy~~~~~~-~~~vAv------K~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 734 (983)
..+.+| ||.||+|.+.. ..+||| |..+... ..+....|.+|..+++..+|||+++.+++..
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 356676 99999999764 357888 6554322 2233456888999999999999999988764
No 452
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=66.97 E-value=12 Score=36.98 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=75.8
Q ss_pred CCCCccceeeEEecCCceeEEEecccCcccccccccccCcCCCCCHHHHHHHHHHHHHHHH-HHhccCCCCeEeecCCCC
Q 042568 722 RHRNLIRIITICSKPDFKALVLPLMSNGSLENHLYPSHGLSHGLDLIQLVKICSDVAEGVA-YLHHHSPIKVVHCDLKPS 800 (983)
Q Consensus 722 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~-~LH~~~~~~ivH~Dikp~ 800 (983)
.||++ -...-...+...+.|+.-+++.=...+ ..++...+++++.+++.... +++. -+|-=+.|+
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i-------~~~~~~eKlrll~nl~~L~~~~~~~-----r~tf~l~P~ 113 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAI-------RKTTLLSRIRAAIHLVSKVKHHSAR-----RLIFIVCPE 113 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHH-------HTSCHHHHHHHHHHHHHHHSSCCSS-----SEECCCCGG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHH-------HhcCHHHHHHHHHHHHHHHHHhhhC-----ceeEEEeCc
Confidence 57887 344445666666666554322111112 34788899999999998776 5554 367789999
Q ss_pred CeEeCCCCCEEEccccccccccCCcccccccCCCCccccccCccccccccccccccCCCCCCccchhHHHHHHHHHHHhC
Q 042568 801 NILLDEDLTALVADFGIAKLVKGIDESVNCANDSMSFTSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVTG 880 (983)
Q Consensus 801 NiLl~~~~~~kl~Dfgla~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~k~Dv~SlG~il~elltg 880 (983)
||++|.++.+++.-.|+-..+ +|.- .++..=.-.+=+++..++.+
T Consensus 114 NL~f~~~~~p~i~hRGi~~~l------------------------------pP~e-----~~ee~fl~qyKali~all~~ 158 (219)
T 4ano_A 114 NLMFNRALEPFFLHVGVKESL------------------------------PPDE-----WDDERLLREVKATVLALTEG 158 (219)
T ss_dssp GEEECTTCCEEESCCEETTTB------------------------------SSCS-----CCHHHHHHHHHHHHHHHTTC
T ss_pred eEEEeCCCcEEEEEcCCcccC------------------------------CCCC-----CCHHHHHHHHHHHHHHHHcC
Confidence 999999999999877764332 3321 12222233477888889998
Q ss_pred CCCCCc
Q 042568 881 RRPTDV 886 (983)
Q Consensus 881 ~~p~~~ 886 (983)
+..|+.
T Consensus 159 K~~Fe~ 164 (219)
T 4ano_A 159 EYRFDE 164 (219)
T ss_dssp SSCHHH
T ss_pred CCCHHH
Confidence 888754
No 453
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=62.00 E-value=13 Score=26.06 Aligned_cols=7 Identities=0% Similarity=0.354 Sum_probs=2.8
Q ss_pred hhhhhhc
Q 042568 623 FLVLRSK 629 (983)
Q Consensus 623 ~~~~~~~ 629 (983)
++++|||
T Consensus 32 ~~~~RRR 38 (44)
T 2jwa_A 32 GILIKRR 38 (44)
T ss_dssp HHHHHHH
T ss_pred Hhheehh
Confidence 3333443
No 454
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=31.21 E-value=49 Score=22.38 Aligned_cols=11 Identities=27% Similarity=0.274 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 042568 611 LFAMSLLFIFG 621 (983)
Q Consensus 611 ~~~~~~l~~~~ 621 (983)
++++.+++.+.
T Consensus 21 v~gv~li~~l~ 31 (38)
T 2k1k_A 21 LLGAALLLGIL 31 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 455
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.62 E-value=2.5e+02 Score=23.44 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=19.8
Q ss_pred CCCCCCCCcccEEeccccccCCCCCcccccCCCCcEEEeeC
Q 042568 324 PPHISNLVNLTLLNLSSNLLNGTIPHELCLMSKLERVYLSN 364 (983)
Q Consensus 324 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 364 (983)
...|.++++|+.+.|..+ ++.+....|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555665555543 2323344455555555555443
No 456
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.59 E-value=1.2e+02 Score=25.39 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCcEEEccCccccCcCcccccCcccchhhccc
Q 042568 371 IPSAFGDIPHLGLLDLSKNKLSGSIPDSFANLSQLRRLLLY 411 (983)
Q Consensus 371 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 411 (983)
...+|.++++|+.+.|-.+ ++.+...+|.++.+|+.+.+.
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3344444444444444433 222334445555555555443
No 457
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=20.01 E-value=22 Score=19.94 Aligned_cols=8 Identities=38% Similarity=1.502 Sum_probs=6.4
Q ss_pred CcceeeEE
Q 042568 64 VCNWSGVK 71 (983)
Q Consensus 64 ~c~w~gv~ 71 (983)
.|+|+|..
T Consensus 7 acswrgle 14 (23)
T 3ox7_P 7 ACSWRGLE 14 (26)
T ss_pred ccccccch
Confidence 59999874
Done!