BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042571
(936 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 98/146 (67%), Gaps = 3/146 (2%)
Query: 793 KARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSY 852
K K+ + RS IH GL I+A + VIEY G +IR +D RE Y+ GIG Y
Sbjct: 48 KTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGC-Y 106
Query: 853 LFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYN 912
+FR+DD VVDAT G ARFINHSC PNCY++VI+++GQK I I+A R I GEE+TY+
Sbjct: 107 MFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYD 166
Query: 913 YKFPLEE--KKIPCYCGSKKCHGSLN 936
YKFP+E+ K+PC CG+KKC LN
Sbjct: 167 YKFPIEDASNKLPCNCGAKKCRKFLN 192
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 82/139 (58%), Gaps = 6/139 (4%)
Query: 800 RFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSS-YLFRLDD 858
RF R++ WG+ EP++A F+IEY+GE++ + + R E+ S Y LD
Sbjct: 78 RF-RAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQ--EFRNRMIEQYHNHSDHYCLNLDS 134
Query: 859 GYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPL- 917
G V+D+ + G ARFINHSC+PNC + SV G +I +YA + + AG E+TY+Y F
Sbjct: 135 GMVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSF 194
Query: 918 -EEKKIPCYCGSKKCHGSL 935
EK+ C CG +KC G +
Sbjct: 195 NVEKQQLCKCGFEKCRGII 213
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 11/147 (7%)
Query: 800 RFQRSKIHD----------WGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIG 849
RFQR + D WGL A + + + FV+EY GE++ K R Y +
Sbjct: 110 RFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNI 169
Query: 850 SSYLFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEI 909
Y L + ++DAT++G +RF+NHSC PNC T+ +V GQ ++ + + + +G E+
Sbjct: 170 HYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSEL 229
Query: 910 TYNYKFPLEEKKIP-CYCGSKKCHGSL 935
T++Y+F K+ C+CGS C G L
Sbjct: 230 TFDYQFQRYGKEAQKCFCGSANCRGYL 256
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 93.2 bits (230), Expect = 6e-19, Method: Composition-based stats.
Identities = 54/139 (38%), Positives = 73/139 (52%), Gaps = 11/139 (7%)
Query: 803 RSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRY-----EKMGIGSSYLFRLD 857
R+ WGL I+ +FV EYVGELI D ECR ++ I + Y+ LD
Sbjct: 98 RTLQRGWGLRTKTDIKKGEFVNEYVGELI-----DEEECRARIRYAQEHDITNFYMLTLD 152
Query: 858 DGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFP- 916
++DA +G ARF+NH C PNC T+ SV G ++ ++A I AG E+T+NY
Sbjct: 153 KDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLEC 212
Query: 917 LEEKKIPCYCGSKKCHGSL 935
L K C CG+ C G L
Sbjct: 213 LGNGKTVCKCGAPNCSGFL 231
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 57/150 (38%), Positives = 79/150 (52%), Gaps = 19/150 (12%)
Query: 796 KKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFR 855
K RL+ R+ WG+ AL+ I F+ EYVGELI +D+RE SYLF
Sbjct: 125 KVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVRE--------DDSYLFD 176
Query: 856 LD--DG--YVVDATKRGGIARFINHSCNPNCYTKVISVEGQK----KIFIYAKRHIAAGE 907
LD DG Y +DA G I+RFINH C+PN + + Q +I ++ R I GE
Sbjct: 177 LDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGE 236
Query: 908 EITYNYK---FPLEEKKIPCYCGSKKCHGS 934
E+ ++Y + ++ K C CGS+KC S
Sbjct: 237 ELGFDYGDRFWDIKSKYFTCQCGSEKCKHS 266
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 79/150 (52%), Gaps = 19/150 (12%)
Query: 796 KKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFR 855
K RL+ R+ WG+ AL+ I F+ EYVGELI +D+RE SYLF
Sbjct: 127 KVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVRE--------DDSYLFD 178
Query: 856 LD--DG--YVVDATKRGGIARFINHSCNPNCYTKVISVEGQK----KIFIYAKRHIAAGE 907
LD DG Y +DA G I+RFINH C+PN + + Q +I ++ R I GE
Sbjct: 179 LDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGE 238
Query: 908 EITYNYK---FPLEEKKIPCYCGSKKCHGS 934
E+ ++Y + ++ K C CGS+KC S
Sbjct: 239 ELGFDYGDRFWDIKSKYFTCQCGSEKCKHS 268
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 86.7 bits (213), Expect = 6e-17, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 19/150 (12%)
Query: 796 KKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFR 855
+ RL+ R++ WG+ +L+ I FV EYVGELI +D+RE SYLF
Sbjct: 120 RARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVRE--------EDSYLFD 171
Query: 856 LD--DG--YVVDATKRGGIARFINHSCNPNCYTKVISVEGQK----KIFIYAKRHIAAGE 907
LD DG Y +DA G ++RFINH C PN + + Q +I ++ R I AGE
Sbjct: 172 LDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGE 231
Query: 908 EITYNYK---FPLEEKKIPCYCGSKKCHGS 934
++ ++Y + ++ K C CGS KC S
Sbjct: 232 QLGFDYGERFWDIKGKLFSCRCGSPKCRHS 261
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 19/150 (12%)
Query: 796 KKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFR 855
+ RL+ R++ WG+ +L+ I FV EYVGELI +D+RE SYLF
Sbjct: 146 RARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVRE--------EDSYLFD 197
Query: 856 LD--DG--YVVDATKRGGIARFINHSCNPNCYTKVISVEGQK----KIFIYAKRHIAAGE 907
LD DG Y +DA G ++RFINH C PN + + Q +I ++ R I AGE
Sbjct: 198 LDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGE 257
Query: 908 EITYNYK---FPLEEKKIPCYCGSKKCHGS 934
++ ++Y + ++ K C CGS KC S
Sbjct: 258 QLGFDYGERFWDIKGKLFSCRCGSPKCRHS 287
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 19/150 (12%)
Query: 796 KKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFR 855
+ RL+ R++ WG+ +L+ I FV EYVGELI +D+RE SYLF
Sbjct: 144 RARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVRE--------EDSYLFD 195
Query: 856 LD--DG--YVVDATKRGGIARFINHSCNPNCYTKVISVEGQK----KIFIYAKRHIAAGE 907
LD DG Y +DA G ++RFINH C PN + + Q +I ++ R I AGE
Sbjct: 196 LDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGE 255
Query: 908 EITYNYK---FPLEEKKIPCYCGSKKCHGS 934
++ ++Y + ++ K C CGS KC S
Sbjct: 256 QLGFDYGERFWDIKGKLFSCRCGSPKCRHS 285
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 24/158 (15%)
Query: 801 FQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLD--- 857
F+ S WG+ L I+ FV+EYVGE+I + ++ R Y+ GI +YLF LD
Sbjct: 145 FRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGI--TYLFDLDYES 202
Query: 858 DGYVVDATKRGGIARFINHSCNPNCYTKVISVEG----QKKIFIYAKRHIAAGEEITYNY 913
D + VDA + G ++ F+NHSC+PN + ++ +I +++ R I AGEE+T++Y
Sbjct: 203 DEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDY 262
Query: 914 KF--------------PLEEK-KIPCYCGSKKCHGSLN 936
+ P +++ + C CG+ C G LN
Sbjct: 263 QMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYLN 300
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 78/150 (52%), Gaps = 19/150 (12%)
Query: 796 KKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFR 855
+ RL+ R++ WG+ +L+ I FV EYVGELI +D+RE SYLF
Sbjct: 145 RARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVRE--------EDSYLFD 196
Query: 856 LD--DG--YVVDATKRGGIARFINHSCNPNCYTKVISVEGQK----KIFIYAKRHIAAGE 907
LD DG Y +DA G ++RFINH C PN + + Q +I ++ R I AGE
Sbjct: 197 LDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGE 256
Query: 908 EITYNYK---FPLEEKKIPCYCGSKKCHGS 934
++ ++ + ++ K C CGS KC S
Sbjct: 257 QLGFDAGERFWDIKGKLFSCRCGSPKCRHS 286
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 810 GLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEK---MGIGSSYLFRLDDGYVVDATK 866
G++A + DFV+EY G+LI + + RE Y + G Y L Y VDAT+
Sbjct: 42 GVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATR 101
Query: 867 RGG-IARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
+ R INHS + NC TK+ ++G + + A R IAAGEE+ Y+Y
Sbjct: 102 ETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 149
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 810 GLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEK---MGIGSSYLFRLDDGYVVDATK 866
G++A + DFV+EY G+LI + + RE Y + G Y L Y VDAT+
Sbjct: 44 GVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATR 103
Query: 867 RGG-IARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
+ R INHS NC TK+ ++G + + A R IAAGEE+ Y+Y
Sbjct: 104 ETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 151
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 810 GLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEK---MGIGSSYLFRLDDGYVVDATK 866
G++A + DFV+EY G+LI + + RE Y + G Y L Y VDAT+
Sbjct: 38 GVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATR 97
Query: 867 RGG-IARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
+ R INHS NC TK+ ++G + + A R IAAGEE+ Y+Y
Sbjct: 98 ETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 145
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 27/171 (15%)
Query: 790 SQVKARKKRLRFQRSKIH--DWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMG 847
++V + + FQ K H WGL LE I FV EY GE+ L S+++ + +
Sbjct: 117 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEV--LGFSEVQRRIHLQTK 174
Query: 848 IGSSYLFRLDD----GYV----VDATKRGGIARFINHSCNPNCYTKVISVEGQ-KKIFIY 898
S+Y+ + + G V VD T G I RF+NHSC PN + ++ K+ ++
Sbjct: 175 SDSNYIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALF 234
Query: 899 AKRHIAAGEEITYNY------------KFPLEEKKI--PCYCGSKKCHGSL 935
A + I EE++Y+Y K L+ K+ PCYCG+K C L
Sbjct: 235 AAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAFL 285
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 810 GLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEK---MGIGSSYLFRLDDGYVVDATK 866
G++A + DFV+E+ G+LI + + RE Y + G Y L Y VDAT+
Sbjct: 43 GVIATKQFSRGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATR 102
Query: 867 RGG-IARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
+ R INHS NC TK+ ++G + + A R IAAGEE+ Y+Y
Sbjct: 103 ETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 150
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 810 GLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEK---MGIGSSYLFRLDDGYVVDATK 866
G++A + DFV+EY G+LI + + RE Y + G Y L Y VDAT+
Sbjct: 43 GVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATR 102
Query: 867 RGG-IARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
+ R INHS NC TK+ ++G + + A R IAAGEE+ ++Y
Sbjct: 103 ETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDY 150
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 793 KARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSY 852
+ R L ++K WG+ +L A F+ Y+GE+I + R+ Y+ GI +Y
Sbjct: 133 RGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGI--TY 190
Query: 853 LFRLD-----DGYVVDATKRGGIARFINHSCNPN-CYTKVISVEGQKKIF---IYAKRHI 903
LF LD Y VDA G ++RF NHSC+PN + G + I+ +A + I
Sbjct: 191 LFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDI 250
Query: 904 AAGEEITYNYK-----FPLEEKKI----------PCYCGSKKCHGSL 935
EE+T++Y P++ +K C CGS C G L
Sbjct: 251 QPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWL 297
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 69/173 (39%), Gaps = 30/173 (17%)
Query: 793 KARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSY 852
+ R L+ R+K WG+ I+ FV Y+GE+I + +D R Y
Sbjct: 129 RGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVY 188
Query: 853 LFRLD--------------DGYVVDATKRGGIARFINHSCNPNCYTKV-ISVEGQKKIF- 896
LF LD VD G RFINHSC+PN + K I
Sbjct: 189 LFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHD 248
Query: 897 --IYAKRHIAAGEEITYNYKFPL--------EEKKIP----CYCGSKKCHGSL 935
++A + I G E+T++Y L + KI C CG+ KC G L
Sbjct: 249 LALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYL 301
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 869 GIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
G A FINH C PNC K +S G+ + A R I GEEI+ Y
Sbjct: 204 GPAAFINHDCRPNC--KFVST-GRDTACVKALRDIEPGEEISCYY 245
>pdb|3RQ4|A Chain A, Crystal Structure Of Suppressor Of Variegation 4-20
Homolog 2
Length = 247
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 869 GIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYK---FPLEEKKIPCY 925
G A FINH C PNC K + +G + R I G+E+T Y F + + C+
Sbjct: 175 GPAAFINHDCKPNC--KFVPADGNAAC-VKVLRDIEPGDEVTCFYGEGFFGEKNEHCECH 231
Query: 926 CGSKKCHGSL 935
+K G+
Sbjct: 232 TCERKGEGAF 241
>pdb|3U24|A Chain A, The Structure Of A Putative Lipoprotein Of Unknown
Function From Shewanella Oneidensis
Length = 572
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 25/163 (15%)
Query: 402 SLFVDDALQQFLALWCNMKECCEADGNEKAEGASNAHNEHHGDTSTVVDKLK-EGSKRFH 460
S+F DD L+Q + + +A + + AS A NEH + V +LK EG++ F
Sbjct: 183 SVFSDDLLKQVAD--SGLSDAEKALFKTRFDIASKAINEHISWLNAQVSQLKKEGARSFR 240
Query: 461 SSEASTMVEKYTYHRKKKLLRKKFGSPSNCSNSVENAFQTEHVEKSRKQGVAGDVFENAK 520
E +L +KF + + +Q V+K R QG + + K
Sbjct: 241 IGE--------------ELYEQKFAFDIQAGXTAKQLYQKAXVDKDRVQGEXAKITD--K 284
Query: 521 VQPSAVSSKKIGKNK-----LID-ASSKKIGANKFTSVPSKMI 557
+ P ++ K NK LID S+K + + F S K I
Sbjct: 285 LWPKYFTTPKPSDNKIAIRQLIDKLSTKHVKRDDFVSEVRKQI 327
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 873 FINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
+NHSC+PNC V + + A R I GEE+T Y
Sbjct: 239 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 275
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 873 FINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
+NHSC+PNC V + + A R I GEE+T Y
Sbjct: 203 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 239
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 873 FINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
+NHSC+PNC V + + A R I GEE+T Y
Sbjct: 203 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 239
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 873 FINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
+NHSC+PNC V + + A R I GEE+T Y
Sbjct: 204 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 240
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 873 FINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
+NHSC+PNC V + + A R I GEE+T Y
Sbjct: 205 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 241
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 873 FINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913
+NHSC+PNC V + + A R I GEE+T Y
Sbjct: 204 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,066,945
Number of Sequences: 62578
Number of extensions: 1046691
Number of successful extensions: 2338
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2275
Number of HSP's gapped (non-prelim): 38
length of query: 936
length of database: 14,973,337
effective HSP length: 108
effective length of query: 828
effective length of database: 8,214,913
effective search space: 6801947964
effective search space used: 6801947964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)