Query 042571
Match_columns 936
No_of_seqs 264 out of 1352
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 07:28:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1080 Histone H3 (Lys4) meth 100.0 1.9E-49 4.1E-54 471.1 12.7 748 65-936 105-1005(1005)
2 KOG4442 Clathrin coat binding 100.0 3.7E-36 8E-41 342.4 13.8 141 796-936 119-260 (729)
3 KOG1082 Histone H3 (Lys9) meth 99.9 5.7E-28 1.2E-32 264.1 11.3 238 663-935 63-353 (364)
4 KOG1079 Transcriptional repres 99.9 2.6E-27 5.7E-32 269.3 12.6 176 728-918 528-713 (739)
5 smart00317 SET SET (Su(var)3-9 99.9 6.5E-24 1.4E-28 188.6 14.5 115 799-913 2-116 (116)
6 KOG1083 Putative transcription 99.8 2.7E-20 5.9E-25 218.9 3.1 131 789-920 1170-1300(1306)
7 KOG1085 Predicted methyltransf 99.8 3.5E-18 7.7E-23 181.2 12.8 132 786-917 245-380 (392)
8 COG2940 Proteins containing SE 99.7 3.8E-18 8.2E-23 192.8 1.2 149 787-936 322-480 (480)
9 KOG1141 Predicted histone meth 99.7 6.1E-17 1.3E-21 187.3 6.0 76 860-935 1179-1261(1262)
10 PF00856 SET: SET domain; Int 99.6 2.4E-15 5.1E-20 138.1 8.6 107 808-914 1-162 (162)
11 KOG2589 Histone tail methylase 98.9 1E-09 2.2E-14 120.6 4.7 123 804-933 134-257 (453)
12 KOG1081 Transcription factor N 98.8 7.1E-10 1.5E-14 126.5 0.8 119 812-936 319-437 (463)
13 KOG2461 Transcription factor B 97.6 6.9E-05 1.5E-09 84.9 4.8 110 797-917 28-146 (396)
14 KOG1141 Predicted histone meth 97.1 0.0003 6.4E-09 84.4 2.9 52 789-840 791-842 (1262)
15 smart00508 PostSET Cysteine-ri 95.4 0.0065 1.4E-07 45.1 1.1 16 921-936 2-17 (26)
16 KOG2084 Predicted histone tail 91.3 0.28 6E-06 54.7 5.2 51 873-927 208-270 (482)
17 KOG1337 N-methyltransferase [G 75.8 1.8 3.9E-05 50.4 2.5 42 871-915 237-278 (472)
18 PF05033 Pre-SET: Pre-SET moti 75.0 0.99 2.1E-05 41.6 0.1 55 666-720 3-67 (103)
19 KOG1081 Transcription factor N 54.7 3.2 6.9E-05 48.9 -0.9 129 805-935 121-263 (463)
20 PF11764 N-SET: COMPASS (Compl 46.9 5 0.00011 41.2 -0.8 22 762-783 135-156 (167)
21 smart00468 PreSET N-terminal t 34.8 19 0.0004 33.4 1.0 55 664-718 3-70 (98)
22 PF08666 SAF: SAF domain; Int 31.0 30 0.00065 28.8 1.6 16 896-911 3-18 (63)
23 KOG1338 Uncharacterized conser 29.3 34 0.00074 40.2 2.1 41 869-915 217-260 (466)
24 PF14174 YycC: YycC-like prote 25.3 64 0.0014 28.1 2.5 26 32-57 10-35 (53)
25 PF15485 DUF4643: Domain of un 24.6 32 0.0007 38.3 0.8 9 112-120 195-203 (284)
No 1
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.9e-49 Score=471.13 Aligned_cols=748 Identities=24% Similarity=0.223 Sum_probs=430.8
Q ss_pred eEEEEEeechhHHHHHHHHhhccCcchhhhhhHHHHHHHHHHhHHHHHHhhHhhhhhhhHhHHHHHhccccCCCCcccCC
Q 042571 65 VTIFLIRCVNMKFIHYLLLAQKSGGSIEIFWGSYNIVCKMLFDHCMQVMWNAVFGDRVAEYSSAWRKRKLWSGHPKITGP 144 (936)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~ksvg~i~~f~~~~~~V~~~l~d~~MqvmWnaVfyD~va~y~~~WrKrklws~~~~~~~~ 144 (936)
+-.++-.-.-.++-++.++...|+|+++++....+.|++....++|++||. ...+.-+.||.. |- ....+.+
T Consensus 105 ~ke~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~s~~~~~~~~~~ss~~~~-----~~~~~~s~~~~~--~i-~~~~~~p 176 (1005)
T KOG1080|consen 105 SKEFETEGEILKVNSEFEEVKVSSGSSKLHPSKDSKVFPRKDNPDSSEVSC-----IDYWEASQDRYD--EI-VANDGMP 176 (1005)
T ss_pred cccccCcceeeecccccCCceeccCccccCcccccccCCcCCCCcccccch-----hhhhhcccCccc--ce-eeccCCc
Confidence 333444444556778899999999999999999999999999999999999 233444557776 66 4444467
Q ss_pred CCccchhhcccccCCCCCCCCcccCCC--CCCCCccccccccCcCCcccccccccCCcccccccCccCccccccchhHHH
Q 042571 145 ASDYKDDRKRMEQAPSRHDSSVSDDDC--PPGFGMVEIRTENDVQPYHLSLSVPVGENLSKQKNLSCNDHLLLDDVKCIL 222 (936)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~d~~~~~~d~--~~~fg~~~~~te~~~~~~~~s~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~ 222 (936)
.+.+....+..+++.+..|..++-..+ ++..++..+-. -.+.+++-..||.+-.-.--+.+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~d~---------------~~~~~~~v~as~~~~~~~~~~~~~s 241 (1005)
T KOG1080|consen 177 LKSDASSKGVYKPEEFTVGDLVWAKSGRNEPPWPAIVIDP---------------IRQAPRGVLASCLPVAACVMFFGNS 241 (1005)
T ss_pred CcccccccccccCcccccchhhhcccccCCcccccceeeh---------------hhcchhhhhccCcchhhhheeeecc
Confidence 777788888888776555555543332 33333332222 2344455566666511111133444
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHhhccccccccCCCCccccCCCCCCCCCCCCCccCCCC--Ccccccccccchhcc
Q 042571 223 DGVENELYLSTKATYTEYVEILVEDEVRKVVSASKGINMKEDVVDPSSHDLHTCQCGFADVNG--GMRIDSNETSAEIFS 300 (936)
Q Consensus 223 ~~v~nel~~s~k~~l~~~~~~~i~~ev~~~~~~~~~~~~~e~~~~~~~h~~~~~~~~~~~~~~--~~~~~~~~~~~e~~~ 300 (936)
+...+.+|-.-+..+.+++-.++...-.+.....++....|.-. +.+...|.+ +..+++.++-+ ..
T Consensus 242 ~~~~~~~~~~~r~~m~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----------~~~~~~e~~~~~~~~~~~~~~~--~~ 309 (1005)
T KOG1080|consen 242 GVPTERDYAWVRRGMERPFSRPVRPFQDQTELKREKARSFEQAL----------EEAGLAEQGNWKKDVDDAHLIT--GD 309 (1005)
T ss_pred CCccccchhhhhhccccccchhhhhccccccccccCccchhHHH----------HHhhccccccccccccchhhhc--CC
Confidence 55567778888888888888888888888777777777666422 122223332 22222222111 11
Q ss_pred C-cCchhhhhcCc----cchhhHHhHHHHHHHhhhccCccccccccccccCCCCCCccccccccccccCCCccccccccc
Q 042571 301 S-EDSKSLFQAGK----PLSKDLLSNILACAFKRSFSGFVDNVVDELETDEPSPPGFEDSVRKLVPSCNGKFQFSWSDEF 375 (936)
Q Consensus 301 ~-~~~~~~~~~~~----~~~~~~~s~~~~~~f~~~~~~~~~~~~d~~~~~~~~ppg~e~~~~~~~~~~~~k~~ps~s~~~ 375 (936)
+ .+++.....+. ....+|...++.+.... +++.+.+.+.-+.++.++|||++... .+|+.... ++....++
T Consensus 310 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~v-~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~-~~l~~k~~ 385 (1005)
T KOG1080|consen 310 SSATDSALSEGGPSSFSELQKLHEKGFIKSHSSV-FRKSDKIHVPSTSITKSPPPIAKSAK--KTKALPPA-QGLLCKEC 385 (1005)
T ss_pred CccchhhhhccccccccccccccccCCccccccc-cCCCccccccccccccCCCCchhhcc--ccCccccc-chhhhhhh
Confidence 1 12222222232 22677888888888888 89999999998889999999999885 88999988 99999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccCccccccccccccCCCCCCccchhhcccc
Q 042571 376 TTKMGEYVAIAMCRQKLHAIVVGEWKSLFVDDALQQFLALWCNMKECCEADGNEKAEGASNAHNEHHGDTSTVVDKLKEG 455 (936)
Q Consensus 376 ~p~i~~yv~~a~crq~lh~~v~~~w~slf~~~~~~~~~~s~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~k~~~~ 455 (936)
.+++.-|+..++|++..|-.++.+| .+|. .-++|.--.- .....++.+. .
T Consensus 386 ~~~~~s~~~~g~~~~~~~~~~~~d~-~~~~------~c~~~~~~~~-------------~~~~~~~~~~----------~ 435 (1005)
T KOG1080|consen 386 SDETKSNQTCGICKRIWHSSDSGDW-VRCD------GCDVWIHARC-------------DKISSEKFKY----------S 435 (1005)
T ss_pred hchhhccccccccceecccccccce-eeec------ccccceeecc-------------Cccccccccc----------c
Confidence 9999999999999999999999999 3332 2223322110 0000011111 1
Q ss_pred ccccccccccccccchh-----hhhhhHHHHhhh----------------------------------------------
Q 042571 456 SKRFHSSEASTMVEKYT-----YHRKKKLLRKKF---------------------------------------------- 484 (936)
Q Consensus 456 ~~~~~~~~~~~~~~~~t-----y~rk~k~~rk~~---------------------------------------------- 484 (936)
|.-.+...+++++.+|+ |+++.++.+...
T Consensus 436 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~s~~~~~~~~~~~~~~~~~~~~~k~~~~e~~k~~~~~~~~~k~~~~~ 515 (1005)
T KOG1080|consen 436 SSGMHNYQTLNFPQEYTALNLSYCPKCKLTFDDLSTDLSPAALARVFHMLRYSVKKKKFLSEWERHTGATAKIWKDSSRV 515 (1005)
T ss_pred cccccccccccchhhhhhhhccccchhheecccccccCCcchheeeecccCcchhhhhcccchhhhhccccccccccccc
Confidence 11111112222222222 333332221111
Q ss_pred ------------------------CCCCCCCCc------cch----------h-----hhh--hHHHhhhhcCCCCcccc
Q 042571 485 ------------------------GSPSNCSNS------VEN----------A-----FQT--EHVEKSRKQGVAGDVFE 517 (936)
Q Consensus 485 ------------------------~~~~~~~~~------~e~----------~-----~~~--~~~~k~~~~~~~~~~~~ 517 (936)
..+.+|..- ..+ + .++ -+.....-+|+.-+..+
T Consensus 516 ~~~~~~l~~~~~~~~~~~~~~~~~~~p~s~~~~~~~s~~~~~~~~~~~~~~~l~~~~t~~c~~~~~~~~~~~n~~~~~~~ 595 (1005)
T KOG1080|consen 516 KDELLPLPKWVESRGRSIMNTYNSEKPKSIVLMGKTSVQRMLLELIEKREPRLSKWTTERCAVCRDDEDWEKNVSIICDR 595 (1005)
T ss_pred ccccccchhhhhhccccccccccccCCcchhhhccchhhhhcCcccccchhhhcCCCcccccccccccccccceeeeecc
Confidence 011111100 000 0 000 00001112222222222
Q ss_pred cccccccc-----------ccccccCccccccc----ccccccCCcccC-------------------CCcccccccchh
Q 042571 518 NAKVQPSA-----------VSSKKIGKNKLIDA----SSKKIGANKFTS-------------------VPSKMIGKNKVT 563 (936)
Q Consensus 518 ~~~~~~~~-----------~~~~~~~k~~~~~~----~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 563 (936)
.+..-++- ..-+.--.+..|+- -..+.|+.++|. ++.+|+-++...
T Consensus 596 ~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~g~al~p~d~gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~ 675 (1005)
T KOG1080|consen 596 CTRSVHSECYGNLKSYDGTSWVCDSCETLDIKRSCCLCPVKGGALKPTDEGRWVHVECAWFRPEVCLASPERMEPAVGTF 675 (1005)
T ss_pred ccccCCCcccccCCCCCCCcchhhccccccCCchhhhccccCcccCCCCccchhhhhchhccccccCCCccCCCCccccc
Confidence 22221111 00000111101110 123445555544 222221111111
Q ss_pred hccccccCCccccCCCCCCCCccccccccccceeecccccCcccCCCCCcccccccccCCCccc--ceecc----ccccc
Q 042571 564 AESSASAGSSKVKSKLPSGYSSAKSTISQKVMKVTSAVQRDKVPVPKPSGEMLSTLSADGNDVG--KVVRG----KAHNV 637 (936)
Q Consensus 564 ~~~~~s~~~~~v~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--k~~~~----~~~~~ 637 (936)
+ ++ +.+-+.+... ...-+|.+....+...+-++..+ -+...+. ++.-. ..++.
T Consensus 676 --~--------~p---~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 734 (1005)
T KOG1080|consen 676 --K--------IP---ALSFLKICFI-------HGSCRQCCKCETGSHAMCASRAG-YIMEAVSLEEVSQQTTSYVKEDG 734 (1005)
T ss_pred --c--------cC---ccchhhhccc-------cccccccchhhhcceehhhcCcc-Chhhhhhhhhhhhhhhhhhhhcc
Confidence 0 00 0000000000 11223556666665544444422 1111111 11000 01111
Q ss_pred ccccccccccCCCCCCcchhhhhhhhcccCCcccccccceeccCCccchHhhHHHHhhhhhccCCCcCCCCCCCCCCccc
Q 042571 638 GIEKDSILDSSKSKPNATKESKQKRKRTMDGLELHATKALKVAKGTAKQAASRQVAMKKTKASKSRTSNLCPRSDGCARS 717 (936)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~g~e~~~~~~l~~~~~~~~~~a~k~~~~~k~ks~gck~~~~C~~s~GCARs 717 (936)
+....+.-.-+..-...+...-.+++++.+ |.+...+++..+........-.....+...++|.+.
T Consensus 735 ~~~d~~l~~~~~~~~~~~~~~~~~k~~~~~--------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 800 (1005)
T KOG1080|consen 735 PGPDSVLKVNTPSGKFGAENLSQNKKSRTD--------------GVRLVLTYKEYAPLREIKSRAEPLNRIDFSSEARCR 800 (1005)
T ss_pred CCcccceeecCccccccccchhhhhhcccc--------------ccccccccccccccccchhcccCCcccCcccccccc
Confidence 111111111111111111111222222222 222233332221111112222333444444444433
Q ss_pred CCCCcccccccccCChHHHhhhhCCccccccccCCccccccccCCCCCcccchhhhhhhHHHHhh------hhhHHHHHH
Q 042571 718 SISGWEWHKWSLNASPAERARVRGAQYVHTKYLGPEVNASQWANGKGLSARTNRVKLRNLLAAAE------GAELLKASQ 791 (936)
Q Consensus 718 ~p~G~~~~~w~~~a~~~~r~rvrg~Pcv~~~~l~~E~~~~q~s~~~~~ssR~NRv~qR~ll~~~e------g~dllK~~q 791 (936)
.+. +.|.... .+..++.+........ -.....+|..|+++++... ..++++++|
T Consensus 801 ~~~----r~~~~~~----~~~~~s~~~~~s~~~s------------~~~s~~~rl~q~rl~a~~~~~~~~~~~~~~~~~~ 860 (1005)
T KOG1080|consen 801 SES----RSDNSKS----PLAEESESDITSGGSS------------HDLSAEERLNQFRLSASFTASFILDEAEVLRYNQ 860 (1005)
T ss_pred chh----hcccccc----cccccccccccccccc------------cchhHHhhhHHHHhhhhcccccccchHHHHHHHH
Confidence 311 2122222 2233333332211111 1234567888888887654 478999999
Q ss_pred hhhccccEEEEecCCCcceEEEcccCCCCCEEEEeecEEeehhhhhHHHHHHhhhCCCceeEEEecCCeEEeccccCCcc
Q 042571 792 VKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIA 871 (936)
Q Consensus 792 lkgrkkrLeV~rSpikGwGVFAtedIpkGtfI~EYvGEVIs~eEad~Re~~y~~~g~~ssYlF~Lddd~vIDAt~~GNiA 871 (936)
++.++++|.|++|.+|||||||.++|.+|+||+||+||+|+..+++.|+..|...|++..|+|++|++.||||+++||+|
T Consensus 861 ~~~rkk~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gniA 940 (1005)
T KOG1080|consen 861 LKFRKKYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGNIA 940 (1005)
T ss_pred HhhhhhhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceEEEEEECCeEEEEEEEccCCCCCCeeeeeCCCCCCCCCcceecCCCCCcccCC
Q 042571 872 RFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCYCGSKKCHGSLN 936 (936)
Q Consensus 872 RFINHSC~PNC~~r~V~veg~~RIvIfAlRDIkaGEELTIDYG~d~eekkf~ClCGS~nCRG~LN 936 (936)
|||||||+|||+++++.++|+.+|+|||.|+|.+||||||||.|+.++.+++|+||+++|||+||
T Consensus 941 r~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~kipClCgap~Crg~~n 1005 (1005)
T KOG1080|consen 941 RFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDDKIPCLCGAPNCRGFLN 1005 (1005)
T ss_pred heeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccccccccccccccCCCccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-36 Score=342.40 Aligned_cols=141 Identities=39% Similarity=0.697 Sum_probs=135.6
Q ss_pred cccEEEEecCCCcceEEEcccCCCCCEEEEeecEEeehhhhhHHHHHHhhhCCCceeEEEecCCeEEeccccCCcccccc
Q 042571 796 KKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFIN 875 (936)
Q Consensus 796 kkrLeV~rSpikGwGVFAtedIpkGtfI~EYvGEVIs~eEad~Re~~y~~~g~~ssYlF~Lddd~vIDAt~~GNiARFIN 875 (936)
...++++.+..+||||+|.++|++|+||+||.||||...++..|...|...+..++|+|.+..+.+||||..||+|||||
T Consensus 119 yA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~~~e~IDAT~KGnlaRFiN 198 (729)
T KOG4442|consen 119 YAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMALQGGEYIDATKKGNLARFIN 198 (729)
T ss_pred cCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEecCCceecccccCcHHHhhc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEECCeEEEEEEEccCCCCCCeeeeeCCCCCC-CCCcceecCCCCCcccCC
Q 042571 876 HSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLE-EKKIPCYCGSKKCHGSLN 936 (936)
Q Consensus 876 HSC~PNC~~r~V~veg~~RIvIfAlRDIkaGEELTIDYG~d~e-ekkf~ClCGS~nCRG~LN 936 (936)
|||+|||+++.|.|.+..||+|||.|.|.+||||||||+++.. ....+|+||+++|||||.
T Consensus 199 HSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IG 260 (729)
T KOG4442|consen 199 HSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIG 260 (729)
T ss_pred CCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCcccccccC
Confidence 9999999999999999999999999999999999999999854 467899999999999983
No 3
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=5.7e-28 Score=264.11 Aligned_cols=238 Identities=25% Similarity=0.356 Sum_probs=164.5
Q ss_pred hcccCCccccccccee-ccCCccchHhhHHHHhh---------hhhccCCCcCCCCCCC----CCCcccCCCCccccccc
Q 042571 663 KRTMDGLELHATKALK-VAKGTAKQAASRQVAMK---------KTKASKSRTSNLCPRS----DGCARSSISGWEWHKWS 728 (936)
Q Consensus 663 k~~~~g~e~~~~~~l~-~~~~~~~~~a~k~~~~~---------k~ks~gck~~~~C~~s----~GCARs~p~G~~~~~w~ 728 (936)
...+-|.+.+|+..+. ++..++ ..+.++... -....+|.|...|+.. |.|++.+ |....+
T Consensus 63 ~d~~~~~e~~~v~~~n~id~~~~--~~f~y~~~~~~~~~~~~~~~~~~~c~C~~~~~~~~~~~C~C~~~n--~~~~~~-- 136 (364)
T KOG1082|consen 63 EDIALGSENLPVPLVNRIDEDAP--LYFQYIATEIVDPGELSDCENSTGCRCCSSCSSVLPLTCLCERHN--GGLVAY-- 136 (364)
T ss_pred ccccCccccCceeeeeeccCCcc--ccceeccccccCccccccCccccCCCccCCCCCCCCccccChHhh--CCcccc--
Confidence 3555667777887774 444444 333333222 1234578888777654 5666544 322211
Q ss_pred ccCChHHHhhhhCCccccccccCCccccccccCCCCCcccchhhhhhhHHHHhhhhhHHHHHHhhhccccEEEEecCCCc
Q 042571 729 LNASPAERARVRGAQYVHTKYLGPEVNASQWANGKGLSARTNRVKLRNLLAAAEGAELLKASQVKARKKRLRFQRSKIHD 808 (936)
Q Consensus 729 ~~a~~~~r~rvrg~Pcv~~~~l~~E~~~~q~s~~~~~ssR~NRv~qR~ll~~~eg~dllK~~qlkgrkkrLeV~rSpikG 808 (936)
.............+.+ .||+..| +|...|.||+.|. +.+.+|+|++++.+|
T Consensus 137 -~~~~~~~~~~~~~~~i------~EC~~~C----~C~~~C~nRv~q~------------------g~~~~leIfrt~~kG 187 (364)
T KOG1082|consen 137 -TCDGDCGTLGKFKEPV------FECSVAC----GCHPDCANRVVQK------------------GLQFHLEVFRTPEKG 187 (364)
T ss_pred -ccCCccccccccCccc------cccccCC----CCCCcCcchhhcc------------------ccccceEEEecCCce
Confidence 0000000111111111 2555444 8999999999775 577899999999999
Q ss_pred ceEEEcccCCCCCEEEEeecEEeehhhhhHHHHHHhhhC--CCceeEE---------------------EecCCeEEecc
Q 042571 809 WGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMG--IGSSYLF---------------------RLDDGYVVDAT 865 (936)
Q Consensus 809 wGVFAtedIpkGtfI~EYvGEVIs~eEad~Re~~y~~~g--~~ssYlF---------------------~Lddd~vIDAt 865 (936)
|||++.+.|++|+||+||.||+++..+++.|...+.... ....+.+ .....+.|||.
T Consensus 188 wgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~ 267 (364)
T KOG1082|consen 188 WGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIADREWVDESPVGNTFVAPSLPGGPGRELLIDAK 267 (364)
T ss_pred eeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhhhccccccccccccccccccccCCCcceEEchh
Confidence 999999999999999999999999999887633322211 1111111 12356899999
Q ss_pred ccCCccccccCCCCCCceEEEEEECC----eEEEEEEEccCCCCCCeeeeeCCCCCC------------CCCcceecCCC
Q 042571 866 KRGGIARFINHSCNPNCYTKVISVEG----QKKIFIYAKRHIAAGEEITYNYKFPLE------------EKKIPCYCGSK 929 (936)
Q Consensus 866 ~~GNiARFINHSC~PNC~~r~V~veg----~~RIvIfAlRDIkaGEELTIDYG~d~e------------ekkf~ClCGS~ 929 (936)
..||++|||||||.||+.+..+..++ ..|++|||+++|.||||||||||..+. .....|.||+.
T Consensus 268 ~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~~~~c~c~~~ 347 (364)
T KOG1082|consen 268 PHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYKLLVQDGANIYTPVMKKNCNCGLE 347 (364)
T ss_pred hcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccccccccccccccccccchhhcCCCH
Confidence 99999999999999999999888774 269999999999999999999996632 24568999999
Q ss_pred CCcccC
Q 042571 930 KCHGSL 935 (936)
Q Consensus 930 nCRG~L 935 (936)
.||+.+
T Consensus 348 ~cr~~~ 353 (364)
T KOG1082|consen 348 KCRGLL 353 (364)
T ss_pred HhCccc
Confidence 999986
No 4
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.94 E-value=2.6e-27 Score=269.33 Aligned_cols=176 Identities=33% Similarity=0.591 Sum_probs=144.9
Q ss_pred cccCChHHHhhhhCCccccccccCC---------cccc-ccccCCCCCcccchhhhhhhHHHHhhhhhHHHHHHhhhccc
Q 042571 728 SLNASPAERARVRGAQYVHTKYLGP---------EVNA-SQWANGKGLSARTNRVKLRNLLAAAEGAELLKASQVKARKK 797 (936)
Q Consensus 728 ~~~a~~~~r~rvrg~Pcv~~~~l~~---------E~~~-~q~s~~~~~ssR~NRv~qR~ll~~~eg~dllK~~qlkgrkk 797 (936)
++.+.+.++.++.||.| .++|... ||.+ .|+.|+.+...+.+-+ ..-..+.+.+.++
T Consensus 528 ~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~~~~~d~~~~------------~C~N~~l~~~~qk 594 (739)
T KOG1079|consen 528 FCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGNVDHFDSSKI------------SCKNTNLQRGEQK 594 (739)
T ss_pred cccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCcccccccCcc------------ccccchhhhhhhc
Confidence 45667899999999988 5555443 2221 1222222222221111 1223445668889
Q ss_pred cEEEEecCCCcceEEEcccCCCCCEEEEeecEEeehhhhhHHHHHHhhhCCCceeEEEecCCeEEeccccCCccccccCC
Q 042571 798 RLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHS 877 (936)
Q Consensus 798 rLeV~rSpikGwGVFAtedIpkGtfI~EYvGEVIs~eEad~Re~~y~~~g~~ssYlF~Lddd~vIDAt~~GNiARFINHS 877 (936)
++.++.|.+.|||+|+++.+.+++||.||+||+|++.|+++|.+.|+... .+|+|++..+++|||++.||.+||+|||
T Consensus 595 r~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~--cSflFnln~dyviDs~rkGnk~rFANHS 672 (739)
T KOG1079|consen 595 RVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYM--CSFLFNLNNDYVIDSTRKGNKIRFANHS 672 (739)
T ss_pred ceeechhhccccceeeccccCCCceeeeecceeccchhhhhccccccccc--ceeeeeccccceEeeeeecchhhhccCC
Confidence 99999999999999999999999999999999999999999999999875 5999999999999999999999999999
Q ss_pred CCCCceEEEEEECCeEEEEEEEccCCCCCCeeeeeCCCCCC
Q 042571 878 CNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLE 918 (936)
Q Consensus 878 C~PNC~~r~V~veg~~RIvIfAlRDIkaGEELTIDYG~d~e 918 (936)
-+|||++.++.+.|..||.|||.|+|.+||||||||++.-+
T Consensus 673 ~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs~~ 713 (739)
T KOG1079|consen 673 FNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYSPE 713 (739)
T ss_pred CCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccCcc
Confidence 99999999999999999999999999999999999998754
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.91 E-value=6.5e-24 Score=188.56 Aligned_cols=115 Identities=43% Similarity=0.762 Sum_probs=104.3
Q ss_pred EEEEecCCCcceEEEcccCCCCCEEEEeecEEeehhhhhHHHHHHhhhCCCceeEEEecCCeEEeccccCCccccccCCC
Q 042571 799 LRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSC 878 (936)
Q Consensus 799 LeV~rSpikGwGVFAtedIpkGtfI~EYvGEVIs~eEad~Re~~y~~~g~~ssYlF~Lddd~vIDAt~~GNiARFINHSC 878 (936)
+++.+++.+|+||||+++|++|++|++|.|.++...++..+...+...+....|+|.....++||+...||++|||||||
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~iNHsc 81 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDSDLCIDARRKGNIARFINHSC 81 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCCCEEEeCCccCcHHHeeCCCC
Confidence 56778889999999999999999999999999998888777666666655568999988889999999999999999999
Q ss_pred CCCceEEEEEECCeEEEEEEEccCCCCCCeeeeeC
Q 042571 879 NPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNY 913 (936)
Q Consensus 879 ~PNC~~r~V~veg~~RIvIfAlRDIkaGEELTIDY 913 (936)
.|||.+..+..++..++.|+|+|||++|||||+||
T Consensus 82 ~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 82 EPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 99999998888777799999999999999999999
No 6
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.79 E-value=2.7e-20 Score=218.95 Aligned_cols=131 Identities=35% Similarity=0.566 Sum_probs=114.4
Q ss_pred HHHhhhccccEEEEecCCCcceEEEcccCCCCCEEEEeecEEeehhhhhHHHHHHhhhCCCceeEEEecCCeEEeccccC
Q 042571 789 ASQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRG 868 (936)
Q Consensus 789 ~~qlkgrkkrLeV~rSpikGwGVFAtedIpkGtfI~EYvGEVIs~eEad~Re~~y~~~g~~ssYlF~Lddd~vIDAt~~G 868 (936)
..+..+....|.+++.+..||||.|.++|.+|+||+||+|+|++..+.+.+- .-........|+..++.+.+||+.++|
T Consensus 1170 rm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~m-mtl~~~d~~~~cL~I~p~l~id~~R~~ 1248 (1306)
T KOG1083|consen 1170 RMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRM-MTLYHNDDDHYCLVIDPGLFIDIPRMG 1248 (1306)
T ss_pred HhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccc-cccCCCCCcccccccCccccCChhhcc
Confidence 3445567789999999999999999999999999999999999988777661 111223356889999999999999999
Q ss_pred CccccccCCCCCCceEEEEEECCeEEEEEEEccCCCCCCeeeeeCCCCCCCC
Q 042571 869 GIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEK 920 (936)
Q Consensus 869 NiARFINHSC~PNC~~r~V~veg~~RIvIfAlRDIkaGEELTIDYG~d~eek 920 (936)
|.+|||||+|.|||..+.+.++|..|+++||+|||.+||||||||.+-..++
T Consensus 1249 n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks~~~ 1300 (1306)
T KOG1083|consen 1249 NGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKSFNY 1300 (1306)
T ss_pred ccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccccccCC
Confidence 9999999999999999999999999999999999999999999998765444
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.76 E-value=3.5e-18 Score=181.18 Aligned_cols=132 Identities=32% Similarity=0.491 Sum_probs=116.7
Q ss_pred HHHHHHhhhccccEEEEecCCCcceEEEcccCCCCCEEEEeecEEeehhhhhHHHHHHhhhCCCceeEEEe---cCCeEE
Q 042571 786 LLKASQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRL---DDGYVV 862 (936)
Q Consensus 786 llK~~qlkgrkkrLeV~rSpikGwGVFAtedIpkGtfI~EYvGEVIs~eEad~Re~~y~~~g~~ssYlF~L---ddd~vI 862 (936)
.++...++++...+.+.--.++|.||+|..++.+|+||.||.|.+|.-.++..|+..|........|+|.+ +..|+|
T Consensus 245 ~l~~~vl~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~sk~yCi 324 (392)
T KOG1085|consen 245 ALRDTVLKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHNSKKYCI 324 (392)
T ss_pred HHHHHHHhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeeccCeeeee
Confidence 44555677888888888778899999999999999999999999999999999999998776666666544 567999
Q ss_pred ecccc-CCccccccCCCCCCceEEEEEECCeEEEEEEEccCCCCCCeeeeeCCCCC
Q 042571 863 DATKR-GGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPL 917 (936)
Q Consensus 863 DAt~~-GNiARFINHSC~PNC~~r~V~veg~~RIvIfAlRDIkaGEELTIDYG~d~ 917 (936)
||+.. +-++|.||||-.+||.+.++.+++.+|++++|.|||.+||||+||||.-.
T Consensus 325 DAT~et~~lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRS 380 (392)
T KOG1085|consen 325 DATKETPWLGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRS 380 (392)
T ss_pred ecccccccchhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccc
Confidence 99986 56899999999999999999999999999999999999999999999753
No 8
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.69 E-value=3.8e-18 Score=192.81 Aligned_cols=149 Identities=43% Similarity=0.718 Sum_probs=124.4
Q ss_pred HHHHHhhhccccEEEEecCCCcceEEEcccCCCCCEEEEeecEEeehhhhhHHHHHHhhhCCCceeEEEecC-CeEEecc
Q 042571 787 LKASQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDD-GYVVDAT 865 (936)
Q Consensus 787 lK~~qlkgrkkrLeV~rSpikGwGVFAtedIpkGtfI~EYvGEVIs~eEad~Re~~y~~~g~~ssYlF~Ldd-d~vIDAt 865 (936)
+.......+.....+..+..+|||+||.+.|++|++|.+|.|++++..++..++..+...+. ...++.+.. ..++|+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~ 400 (480)
T COG2940 322 LNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGN-EFSFGLLEDKDKVRDSQ 400 (480)
T ss_pred hhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhcccccccc-ccchhhccccchhhhhh
Confidence 33444566777888999999999999999999999999999999999998888877744332 222333333 7899999
Q ss_pred ccCCccccccCCCCCCceEEEEEECCeEEEEEEEccCCCCCCeeeeeCCCCCCCC---------CcceecCCCCCcccCC
Q 042571 866 KRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEK---------KIPCYCGSKKCHGSLN 936 (936)
Q Consensus 866 ~~GNiARFINHSC~PNC~~r~V~veg~~RIvIfAlRDIkaGEELTIDYG~d~eek---------kf~ClCGS~nCRG~LN 936 (936)
..|+.+|||||||.|||........|..++.++|+|||.+|||||+||+...+.. .+.|.||+..|+++|+
T Consensus 401 ~~g~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (480)
T COG2940 401 KAGDVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHTMS 480 (480)
T ss_pred hcccccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCCCC
Confidence 9999999999999999999876666667999999999999999999999887652 4689999999999986
No 9
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.66 E-value=6.1e-17 Score=187.31 Aligned_cols=76 Identities=34% Similarity=0.844 Sum_probs=70.1
Q ss_pred eEEeccccCCccccccCCCCCCceEEEEEECCe----EEEEEEEccCCCCCCeeeeeCCCCCC---CCCcceecCCCCCc
Q 042571 860 YVVDATKRGGIARFINHSCNPNCYTKVISVEGQ----KKIFIYAKRHIAAGEEITYNYKFPLE---EKKIPCYCGSKKCH 932 (936)
Q Consensus 860 ~vIDAt~~GNiARFINHSC~PNC~~r~V~veg~----~RIvIfAlRDIkaGEELTIDYG~d~e---ekkf~ClCGS~nCR 932 (936)
++|||...||++||+||||.||+.++.|.++.+ +.++|||.+.|++|.||||||++..+ .+...|.||+.+||
T Consensus 1179 yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~Cr 1258 (1262)
T KOG1141|consen 1179 YVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCR 1258 (1262)
T ss_pred EEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhh
Confidence 689999999999999999999999999999865 67999999999999999999998754 35788999999999
Q ss_pred ccC
Q 042571 933 GSL 935 (936)
Q Consensus 933 G~L 935 (936)
|.|
T Consensus 1259 grL 1261 (1262)
T KOG1141|consen 1259 GRL 1261 (1262)
T ss_pred ccc
Confidence 987
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.60 E-value=2.4e-15 Score=138.11 Aligned_cols=107 Identities=22% Similarity=0.203 Sum_probs=75.6
Q ss_pred cceEEEcccCCCCCEEEEeecEEeehhhhhHH-------------------H--------------H-------------
Q 042571 808 DWGLVALEPIEAEDFVIEYVGELIRLKISDIR-------------------E--------------C------------- 841 (936)
Q Consensus 808 GwGVFAtedIpkGtfI~EYvGEVIs~eEad~R-------------------e--------------~------------- 841 (936)
|+||||+++|++|++|++..+.+++....... . .
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999887555331 0 0
Q ss_pred ---------HHhhhCCCceeEEEecCCeEEeccccCCccccccCCCCCCceEEEEEECCeEEEEEEEccCCCCCCeeeee
Q 042571 842 ---------RYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYN 912 (936)
Q Consensus 842 ---------~y~~~g~~ssYlF~Lddd~vIDAt~~GNiARFINHSC~PNC~~r~V~veg~~RIvIfAlRDIkaGEELTID 912 (936)
.....................++.....++.|+||||.|||.+..........+.|+|.|+|++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is 160 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS 160 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence 00000000011122223455667777889999999999999998877678899999999999999999999
Q ss_pred CC
Q 042571 913 YK 914 (936)
Q Consensus 913 YG 914 (936)
||
T Consensus 161 YG 162 (162)
T PF00856_consen 161 YG 162 (162)
T ss_dssp ST
T ss_pred EC
Confidence 98
No 11
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.90 E-value=1e-09 Score=120.65 Aligned_cols=123 Identities=25% Similarity=0.293 Sum_probs=88.1
Q ss_pred cCCCcceEEEcccCCCCCEEEEeecEEeehhhhhHHHHHHhhhCCCceeEEEecCCeEEeccccCCccccccCCCCCCce
Q 042571 804 SKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCNPNCY 883 (936)
Q Consensus 804 SpikGwGVFAtedIpkGtfI~EYvGEVIs~eEad~Re~~y~~~g~~ssYlF~Lddd~vIDAt~~GNiARFINHSC~PNC~ 883 (936)
....|--|.+++.+.+|+-|-..+|.|+...+++.+..... +...+-++.-... -.+...-+.|+||||.|.|||.
T Consensus 134 e~~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~--g~nDFSvmyStRk--~caqLwLGPaafINHDCrpnCk 209 (453)
T KOG2589|consen 134 ESQNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRG--GGNDFSVMYSTRK--RCAQLWLGPAAFINHDCRPNCK 209 (453)
T ss_pred ccCCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhc--cCCceeeeeeccc--chhhheeccHHhhcCCCCCCce
Confidence 33569999999999999999999999987766665532211 1111111111111 1122334689999999999999
Q ss_pred EEEEEECCeEEEEEEEccCCCCCCeeeeeCCCCCC-CCCcceecCCCCCcc
Q 042571 884 TKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLE-EKKIPCYCGSKKCHG 933 (936)
Q Consensus 884 ~r~V~veg~~RIvIfAlRDIkaGEELTIDYG~d~e-ekkf~ClCGS~nCRG 933 (936)
|. ..|..++.|.++|||+||||||.-||..+. ..+..|.|-++.=+|
T Consensus 210 Fv---s~g~~tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC~TCER~g 257 (453)
T KOG2589|consen 210 FV---STGRDTACVKVLRDIEPGEEITCFYGSGFFGENNEECECVTCERRG 257 (453)
T ss_pred ee---cCCCceeeeehhhcCCCCceeEEeecccccCCCCceeEEeeccccc
Confidence 83 346689999999999999999999998754 567889997655555
No 12
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.83 E-value=7.1e-10 Score=126.46 Aligned_cols=119 Identities=34% Similarity=0.573 Sum_probs=103.0
Q ss_pred EEcccCCCCCEEEEeecEEeehhhhhHHHHHHhhhCCCceeEEEecCCeEEeccccCCccccccCCCCCCceEEEEEECC
Q 042571 812 VALEPIEAEDFVIEYVGELIRLKISDIRECRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCNPNCYTKVISVEG 891 (936)
Q Consensus 812 FAtedIpkGtfI~EYvGEVIs~eEad~Re~~y~~~g~~ssYlF~Lddd~vIDAt~~GNiARFINHSC~PNC~~r~V~veg 891 (936)
+|..+|.+| +|+++...+...|............|+..+..+..||+...||..||+||||.|||....+.+.+
T Consensus 319 ~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~ 392 (463)
T KOG1081|consen 319 TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDFYMVFIQKDRIIDAGPKGNYSRFLNHSCQPNVETEKWQVIG 392 (463)
T ss_pred hhHHhhhcc------cCcccchhhheeehhhhhccchhhhhhhhhhcccccccccccchhhhhcccCCCceeechhheec
Confidence 777778887 89999988887777766665555666555555559999999999999999999999999998999
Q ss_pred eEEEEEEEccCCCCCCeeeeeCCCCCCCCCcceecCCCCCcccCC
Q 042571 892 QKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCYCGSKKCHGSLN 936 (936)
Q Consensus 892 ~~RIvIfAlRDIkaGEELTIDYG~d~eekkf~ClCGS~nCRG~LN 936 (936)
..++.++|.+.|++|||||++|...-......|.|++.+|.++++
T Consensus 393 ~t~~~~~a~~~i~~g~e~t~~~n~~~~~~~~~~~~~~e~~~~~~~ 437 (463)
T KOG1081|consen 393 DTRVGLFAPRQIEAGEELTFNYNGNCEGNEKRCCCGSENCTETKG 437 (463)
T ss_pred ccccccccccccccchhhhheeeccccCCcceEeecccccccCCc
Confidence 999999999999999999999999888888899999999998763
No 13
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=97.56 E-value=6.9e-05 Score=84.93 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=79.7
Q ss_pred ccEEEEecCC--CcceEEEcccCCCCCEEEEeecEE-eehhhhhHHHHHHhhhCCCceeEEEec-CCeEEeccc--cCCc
Q 042571 797 KRLRFQRSKI--HDWGLVALEPIEAEDFVIEYVGEL-IRLKISDIRECRYEKMGIGSSYLFRLD-DGYVVDATK--RGGI 870 (936)
Q Consensus 797 krLeV~rSpi--kGwGVFAtedIpkGtfI~EYvGEV-Is~eEad~Re~~y~~~g~~ssYlF~Ld-dd~vIDAt~--~GNi 870 (936)
..|+|..|.+ .|.||++...|++|+-.+=|.|++ +.... . ..+....-++|.-+ .-++||++. ..|+
T Consensus 28 ~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~-----~--~~n~~y~W~I~~~d~~~~~iDg~d~~~sNW 100 (396)
T KOG2461|consen 28 PELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDS-----K--SANNRYMWEIFSSDNGYEYIDGTDEEHSNW 100 (396)
T ss_pred CceEeeccccCCccccccccccccCcccccCccCcccccccc-----c--cccCcceEEEEeCCCceEEeccCChhhcce
Confidence 4567766665 478999999999999999999997 22110 0 01111223344444 237899986 5899
Q ss_pred cccccCCCC---CCceEEEEEECCeEEEEEEEccCCCCCCeeeeeCCCCC
Q 042571 871 ARFINHSCN---PNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPL 917 (936)
Q Consensus 871 ARFINHSC~---PNC~~r~V~veg~~RIvIfAlRDIkaGEELTIDYG~d~ 917 (936)
.||||=+++ -|..+ +.....|.++|+|+|.+||||.+.|+.++
T Consensus 101 mRYV~~Ar~~eeQNL~A----~Q~~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 101 MRYVNSARSEEEQNLLA----FQIGENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred eeeecccCChhhhhHHH----HhccCceEEEecccCCCCCeEEEEeccch
Confidence 999997775 46554 44567899999999999999999998764
No 14
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=97.07 E-value=0.0003 Score=84.36 Aligned_cols=52 Identities=27% Similarity=0.371 Sum_probs=45.2
Q ss_pred HHHhhhccccEEEEecCCCcceEEEcccCCCCCEEEEeecEEeehhhhhHHH
Q 042571 789 ASQVKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRLKISDIRE 840 (936)
Q Consensus 789 ~~qlkgrkkrLeV~rSpikGwGVFAtedIpkGtfI~EYvGEVIs~eEad~Re 840 (936)
...+.|.+.||.+++...+|||++...+|..|.||+.|.|.++++..++.-+
T Consensus 791 rmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~~~sdks~ 842 (1262)
T KOG1141|consen 791 RMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLHQISDKSE 842 (1262)
T ss_pred HHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhhhhchhhh
Confidence 3345678889999999999999999999999999999999999887776543
No 15
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=95.41 E-value=0.0065 Score=45.15 Aligned_cols=16 Identities=50% Similarity=1.250 Sum_probs=14.5
Q ss_pred CcceecCCCCCcccCC
Q 042571 921 KIPCYCGSKKCHGSLN 936 (936)
Q Consensus 921 kf~ClCGS~nCRG~LN 936 (936)
.++|+||+.+|||+||
T Consensus 2 ~~~C~CGs~~CRG~l~ 17 (26)
T smart00508 2 KQPCLCGAPNCRGFLG 17 (26)
T ss_pred CeeeeCCCccccceec
Confidence 4799999999999985
No 16
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=91.26 E-value=0.28 Score=54.66 Aligned_cols=51 Identities=35% Similarity=0.616 Sum_probs=35.1
Q ss_pred cccCCCCCCceEEEEEECCeEEEEEEEccCCCCCC-eeeeeCCCCCCC-----------CCcceecC
Q 042571 873 FINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGE-EITYNYKFPLEE-----------KKIPCYCG 927 (936)
Q Consensus 873 FINHSC~PNC~~r~V~veg~~RIvIfAlRDIkaGE-ELTIDYG~d~ee-----------kkf~ClCG 927 (936)
++||||.||+.. .++ .....+++...+.+++ ||++.|-..... +.|.|.|+
T Consensus 208 ~~~hsC~pn~~~---~~~-~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~ 270 (482)
T KOG2084|consen 208 LFNHSCFPNISV---IFD-GRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCP 270 (482)
T ss_pred hcccCCCCCeEE---EEC-CceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecC
Confidence 899999999872 233 3445555666777776 999999765432 23777775
No 17
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=75.80 E-value=1.8 Score=50.36 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=32.0
Q ss_pred cccccCCCCCCceEEEEEECCeEEEEEEEccCCCCCCeeeeeCCC
Q 042571 871 ARFINHSCNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKF 915 (936)
Q Consensus 871 ARFINHSC~PNC~~r~V~veg~~RIvIfAlRDIkaGEELTIDYG~ 915 (936)
.-+.||+|.+. .. .+......+.+++.++|.+||||+++||.
T Consensus 237 ~D~~NH~~~~~-~~--~~~~~d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 237 IDLLNHSPEVI-KA--GYNQEDEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred HHhhccCchhc-cc--cccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence 34789999992 11 12223348999999999999999999987
No 18
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=75.02 E-value=0.99 Score=41.63 Aligned_cols=55 Identities=9% Similarity=0.061 Sum_probs=29.4
Q ss_pred cCCcccccccceeccCCccchHhhHHHHhh----------hhhccCCCcCCCCCCCCCCcccCCC
Q 042571 666 MDGLELHATKALKVAKGTAKQAASRQVAMK----------KTKASKSRTSNLCPRSDGCARSSIS 720 (936)
Q Consensus 666 ~~g~e~~~~~~l~~~~~~~~~~a~k~~~~~----------k~ks~gck~~~~C~~s~GCARs~p~ 720 (936)
..|.|.+|+.++.-.+..+.|..+.++.+. .....+|+|...|.....|++....
T Consensus 3 s~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~~C~~~~~C~C~~~~ 67 (103)
T PF05033_consen 3 SRGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSGDCSNPSNCECLQRN 67 (103)
T ss_dssp TCTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS-TBGGGTS----SSSSTCTTTSHHHCCT
T ss_pred CCCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCccccccccCccCccCCCCCCCCCCcCcccc
Confidence 467889999988655555445555555333 2223588888888777777666533
No 19
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=54.66 E-value=3.2 Score=48.88 Aligned_cols=129 Identities=15% Similarity=-0.005 Sum_probs=82.8
Q ss_pred CCCcce---EEEcccCCCCCEEEEeecEEeehh--hhhHHHHHHhhhCCCceeEEEec---CCeEEeccccCCccccccC
Q 042571 805 KIHDWG---LVALEPIEAEDFVIEYVGELIRLK--ISDIRECRYEKMGIGSSYLFRLD---DGYVVDATKRGGIARFINH 876 (936)
Q Consensus 805 pikGwG---VFAtedIpkGtfI~EYvGEVIs~e--Ead~Re~~y~~~g~~ssYlF~Ld---dd~vIDAt~~GNiARFINH 876 (936)
+..+|+ ..|.+.+..|++|+.++|+...+. ....+........ . .-.|... .....++...|+..++++|
T Consensus 121 ~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~~~~~~~~-~-~~~f~~~~~~~~~~~~~~~~g~~~~~l~~ 198 (463)
T KOG1081|consen 121 EKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPLLPKGMKH-D-HVNFFGCYAWTHEKRVFPYEGQSSKLIPH 198 (463)
T ss_pred cccccCCcceeeeccccceeEEeEEcCcccccccceecCcccchhhcc-c-cceeccchhhHHHhhhhhccchHHHhhhh
Confidence 344566 778889999999999999987654 2222211100000 0 1111111 1223445558999999999
Q ss_pred CCCCCceEEEEEECCeEEEEEEEccCCCCCCe------eeeeCCCCCCCCCcceecCCCCCcccC
Q 042571 877 SCNPNCYTKVISVEGQKKIFIYAKRHIAAGEE------ITYNYKFPLEEKKIPCYCGSKKCHGSL 935 (936)
Q Consensus 877 SC~PNC~~r~V~veg~~RIvIfAlRDIkaGEE------LTIDYG~d~eekkf~ClCGS~nCRG~L 935 (936)
++.|+-....+......++..++.+.++-+.- .+.+|.....-..+.|.|.+..|+..+
T Consensus 199 ~~~~~s~~~~~~~~~~~r~~~~~~q~~~~~~~~e~k~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 263 (463)
T KOG1081|consen 199 SKKPASTMSEKIKEAKARFGKLKAQWEAGIKQKELKPEEYKRIKVVCPIGDQQIYSAAVSCIKKL 263 (463)
T ss_pred ccccchhhhhhhhcccchhhhcccchhhccchhhcccccccccccccCcCcccccchhhhhhhhc
Confidence 99999877777777888888888888877776 666665544434445666666665544
No 20
>PF11764 N-SET: COMPASS (Complex proteins associated with Set1p) component N; InterPro: IPR024657 The COMPASS complex (complex proteins associated with Set1p) is conserved in yeasts and in other eukaryotes up to humans. The COMPASS complex functions to methylate the fourth lysine of Histone 3 and for the silencing of genes close to the telomeres of chromosomes []. Five domains are conserved in Saccharomyces cerevisiae Set1 and other eukaryotic Set1-related proteins: an amino-terminal RNA-recognition motif (RRM), a semi-conserved central domain, an N-SET domain, the catalytic SET domain, and the C-terminal post-SET domain. This entry represents the N-SET domain, which promotes trimethylation in conjunction with the RRM domain [] and is necessary for binding of the Spp1 component of COMPASS into the complex [].; PDB: 3UVO_B 4ES0_C 3UVN_D 4EWR_C.
Probab=46.94 E-value=5 Score=41.22 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=0.0
Q ss_pred CCCCcccchhhhhhhHHHHhhh
Q 042571 762 GKGLSARTNRVKLRNLLAAAEG 783 (936)
Q Consensus 762 ~~~~ssR~NRv~qR~ll~~~eg 783 (936)
....++|.||+.+|++++.++.
T Consensus 135 ~~~~sSR~nRannRRl~a~i~a 156 (167)
T PF11764_consen 135 QSKSSSRENRANNRRLLADIEA 156 (167)
T ss_dssp ----------------------
T ss_pred ccccchHHHHHHHHHHHHHhcc
Confidence 3556899999999999887654
No 21
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=34.78 E-value=19 Score=33.38 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=33.7
Q ss_pred cccCCcccccccceeccCCccchHhhHHHHhh-----------hhhccCCCcCCCCCCC--CCCcccC
Q 042571 664 RTMDGLELHATKALKVAKGTAKQAASRQVAMK-----------KTKASKSRTSNLCPRS--DGCARSS 718 (936)
Q Consensus 664 ~~~~g~e~~~~~~l~~~~~~~~~~a~k~~~~~-----------k~ks~gck~~~~C~~s--~GCARs~ 718 (936)
+...|.|..|+.++.--+....|..+.++.+. .....||.|...|... |.|++.+
T Consensus 3 Dis~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~~C~~~~~C~C~~~~ 70 (98)
T smart00468 3 DISNGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSGDCSSSNKCECARKN 70 (98)
T ss_pred cccCCccCCCcceEecCCCCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCCCCCCCCcCCcHhhc
Confidence 45678999999999633333334555555432 1224488888888755 5555544
No 22
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=31.03 E-value=30 Score=28.84 Aligned_cols=16 Identities=44% Similarity=0.517 Sum_probs=12.1
Q ss_pred EEEEccCCCCCCeeee
Q 042571 896 FIYAKRHIAAGEEITY 911 (936)
Q Consensus 896 vIfAlRDIkaGEELTI 911 (936)
+++|.|||++|+.|+-
T Consensus 3 vvVA~~di~~G~~i~~ 18 (63)
T PF08666_consen 3 VVVAARDIPAGTVITA 18 (63)
T ss_dssp EEEESSTB-TT-BECT
T ss_pred EEEEeCccCCCCEEcc
Confidence 5789999999999974
No 23
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.27 E-value=34 Score=40.24 Aligned_cols=41 Identities=29% Similarity=0.425 Sum_probs=31.4
Q ss_pred CccccccCC---CCCCceEEEEEECCeEEEEEEEccCCCCCCeeeeeCCC
Q 042571 869 GIARFINHS---CNPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKF 915 (936)
Q Consensus 869 NiARFINHS---C~PNC~~r~V~veg~~RIvIfAlRDIkaGEELTIDYG~ 915 (936)
-++.|+||- |..|..+ +...+-++|.|+|++|+|+.-.||.
T Consensus 217 p~ad~lNhd~~k~nanl~y------~~NcL~mva~r~iekgdev~n~dg~ 260 (466)
T KOG1338|consen 217 PIADFLNHDGLKANANLRY------EDNCLEMVADRNIEKGDEVDNSDGL 260 (466)
T ss_pred chhhhhccchhhcccceec------cCcceeeeecCCCCCcccccccccc
Confidence 367899995 5555433 3456678999999999999999973
No 24
>PF14174 YycC: YycC-like protein
Probab=25.30 E-value=64 Score=28.11 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=23.2
Q ss_pred HHHHHHHhhccchhhhhhhhhHHHHH
Q 042571 32 VAILMAECLKLPVRQIMDVRGAIMLQ 57 (936)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (936)
.|+-+|+-|++|+.|+|-.---|.+|
T Consensus 10 TA~kLs~~L~vPlE~lMHmPqHIL~q 35 (53)
T PF14174_consen 10 TAVKLSKKLGVPLEQLMHMPQHILMQ 35 (53)
T ss_pred HHHHHHHHHCCcHHHHhcCcHHHHHH
Confidence 47788999999999999998888877
No 25
>PF15485 DUF4643: Domain of unknown function (DUF4643)
Probab=24.55 E-value=32 Score=38.32 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=7.9
Q ss_pred HHhhHhhhh
Q 042571 112 VMWNAVFGD 120 (936)
Q Consensus 112 vmWnaVfyD 120 (936)
-|||||+|-
T Consensus 195 kMWDAVLY~ 203 (284)
T PF15485_consen 195 KMWDAVLYQ 203 (284)
T ss_pred HHHHHHHHH
Confidence 599999995
Done!