BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042573
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 128/310 (41%), Gaps = 46/310 (14%)
Query: 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSXXXXXXXXXXXXXXXXQFTGRIPGSIGDLQKL 61
+P ++G+LS +L L + N L G IP TG IP + + L
Sbjct: 434 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 62 QRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSG 121
+ L N+ GEIP IG L +LAIL + N G+IP+ LG C++LI LDL+ N +G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 122 TIPT-----------------------------EVIGLPSFSIYLNLSQNQLN------- 145
TIP E G + + + QLN
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 146 ---------GPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNI 196
G F ++ + +S N LSG IP +GS L L + N G+I
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 197 PSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAI 256
P LRG+ LDLS N L GRIP+ L +++LS N+ G +P G F
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732
Query: 257 SLDGNDNLCG 266
N LCG
Sbjct: 733 KFLNNPGLCG 742
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 129/272 (47%), Gaps = 10/272 (3%)
Query: 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSXXXXXXXXXXXXXXXXQFTGRIP-GSIGDLQK 60
+P+ + L L ++ N +G +P F+G +P ++ ++
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 61 LQRLWLKGNKFWGEIPSSIGNLT-SLAILDFAENMLEGSIPSSLGKCQN----LILLDLS 115
L+ L L N+F GE+P S+ NL+ SL LD + N G I +L CQN L L L
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQ 402
Query: 116 KNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSS 175
N +G IP + + L+LS N L+G +PS+ G L L + L N L GEIP
Sbjct: 403 NNGFTGKIPPTLSNCSEL-VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 176 LGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNL 235
L LE L+++ N G IPS S+ + + LS N L+G IPK+ L L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 236 SFNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 267
S N F G +P + + S I LD N NL G
Sbjct: 522 SNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNG 552
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 114/244 (46%), Gaps = 38/244 (15%)
Query: 46 QFTGRIPGSIGDLQKLQRLWLKGNKFWGE------IPSSIGNLTSLAILDFAENMLEGSI 99
F G++ G + L L+ L L N G + G L LAI + N + G +
Sbjct: 139 DFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDV 194
Query: 100 PSSLGKCQNLILLDLSKNNLSGTIP----------------------TEVIGLPSFSIYL 137
+ +C NL LD+S NN S IP + I + L
Sbjct: 195 --DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 138 NLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSL-GSCIRLEQLVMNGNFFRGNI 196
N+S NQ GP+P LK+L +SL+ENK +GEIP L G+C L L ++GN F G +
Sbjct: 253 NISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 197 PSSFSSLRGIEKLDLSRNNLSGRIP-KYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSA 255
P F S +E L LS NN SG +P L+ L+LSFN F GE+P ++S
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 256 ISLD 259
++LD
Sbjct: 371 LTLD 374
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 122/284 (42%), Gaps = 56/284 (19%)
Query: 46 QFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILD---------------- 89
F+ IP +GD LQ L + GNK G+ +I T L +L+
Sbjct: 211 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK 269
Query: 90 ------FAENMLEGSIPSSL-GKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQN 142
AEN G IP L G C L LDLS N+ G +P G S L LS N
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSN 328
Query: 143 QLNGPLPSNFGI-LKNLGVISLSENKLSGEIPSSLGS----------------------- 178
+G LP + + ++ L V+ LS N+ SGE+P SL +
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 179 CIR----LEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLN 234
C L++L + N F G IP + S+ + L LS N LSG IP + L+ L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 235 LSFNHFEGEVPIKGVFSNS-SAISLDGNDNLCGGISDLHLSTCS 277
L N EGE+P + ++ + + LD ND L G I LS C+
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFND-LTGEIPS-GLSNCT 490
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 13/147 (8%)
Query: 105 KCQ-NLILLDLSKNNLSGTIPT-EVIGLPSFSIYLNLSQNQLNGPLPSNFGI-LKNLGVI 161
KC +L LDLS+N+LSG + T +G S +LN+S N L+ P + G+ L +L V+
Sbjct: 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 162 SLSENKLSGEIPSSLG-----SCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNL 216
LS N +SG + +G C L+ L ++GN G++ S +E LD+S NN
Sbjct: 157 DLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNF 212
Query: 217 SGRIPKYFENFLFLQKLNLSFNHFEGE 243
S IP + + LQ L++S N G+
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGD 238
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 128/310 (41%), Gaps = 46/310 (14%)
Query: 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSXXXXXXXXXXXXXXXXQFTGRIPGSIGDLQKL 61
+P ++G+LS +L L + N L G IP TG IP + + L
Sbjct: 431 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 62 QRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSG 121
+ L N+ GEIP IG L +LAIL + N G+IP+ LG C++LI LDL+ N +G
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 122 TIPT-----------------------------EVIGLPSFSIYLNLSQNQLN------- 145
TIP E G + + + QLN
Sbjct: 550 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 146 ---------GPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNI 196
G F ++ + +S N LSG IP +GS L L + N G+I
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 197 PSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAI 256
P LRG+ LDLS N L GRIP+ L +++LS N+ G +P G F
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 729
Query: 257 SLDGNDNLCG 266
N LCG
Sbjct: 730 KFLNNPGLCG 739
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 129/272 (47%), Gaps = 10/272 (3%)
Query: 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSXXXXXXXXXXXXXXXXQFTGRIP-GSIGDLQK 60
+P+ + L L ++ N +G +P F+G +P ++ ++
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 61 LQRLWLKGNKFWGEIPSSIGNLT-SLAILDFAENMLEGSIPSSLGKCQN----LILLDLS 115
L+ L L N+F GE+P S+ NL+ SL LD + N G I +L CQN L L L
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQ 399
Query: 116 KNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSS 175
N +G IP + + L+LS N L+G +PS+ G L L + L N L GEIP
Sbjct: 400 NNGFTGKIPPTLSNCSEL-VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 176 LGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNL 235
L LE L+++ N G IPS S+ + + LS N L+G IPK+ L L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 236 SFNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 267
S N F G +P + + S I LD N NL G
Sbjct: 519 SNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNG 549
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 114/244 (46%), Gaps = 38/244 (15%)
Query: 46 QFTGRIPGSIGDLQKLQRLWLKGNKFWGE------IPSSIGNLTSLAILDFAENMLEGSI 99
F G++ G + L L+ L L N G + G L LAI + N + G +
Sbjct: 136 DFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDV 191
Query: 100 PSSLGKCQNLILLDLSKNNLSGTIP----------------------TEVIGLPSFSIYL 137
+ +C NL LD+S NN S IP + I + L
Sbjct: 192 --DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 249
Query: 138 NLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSL-GSCIRLEQLVMNGNFFRGNI 196
N+S NQ GP+P LK+L +SL+ENK +GEIP L G+C L L ++GN F G +
Sbjct: 250 NISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 307
Query: 197 PSSFSSLRGIEKLDLSRNNLSGRIP-KYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSA 255
P F S +E L LS NN SG +P L+ L+LSFN F GE+P ++S
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 256 ISLD 259
++LD
Sbjct: 368 LTLD 371
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 122/283 (43%), Gaps = 56/283 (19%)
Query: 47 FTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILD----------------- 89
F+ IP +GD LQ L + GNK G+ +I T L +L+
Sbjct: 209 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS 267
Query: 90 -----FAENMLEGSIPSSL-GKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQ 143
AEN G IP L G C L LDLS N+ G +P G S L LS N
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNN 326
Query: 144 LNGPLPSNFGI-LKNLGVISLSENKLSGEIPSSLGS-----------------------C 179
+G LP + + ++ L V+ LS N+ SGE+P SL + C
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 180 IR----LEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNL 235
L++L + N F G IP + S+ + L LS N LSG IP + L+ L L
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 236 SFNHFEGEVPIKGVFSNS-SAISLDGNDNLCGGISDLHLSTCS 277
N EGE+P + ++ + + LD ND L G I LS C+
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFND-LTGEIPS-GLSNCT 487
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 13/147 (8%)
Query: 105 KCQ-NLILLDLSKNNLSGTIPT-EVIGLPSFSIYLNLSQNQLNGPLPSNFGI-LKNLGVI 161
KC +L LDLS+N+LSG + T +G S +LN+S N L+ P + G+ L +L V+
Sbjct: 94 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 162 SLSENKLSGEIPSSLG-----SCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNL 216
LS N +SG + +G C L+ L ++GN G++ S +E LD+S NN
Sbjct: 154 DLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNF 209
Query: 217 SGRIPKYFENFLFLQKLNLSFNHFEGE 243
S IP + + LQ L++S N G+
Sbjct: 210 STGIP-FLGDCSALQHLDISGNKLSGD 235
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 8/223 (3%)
Query: 47 FTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKC 106
G IP +I L +L L++ G IP + + +L LDF+ N L G++P S+
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 107 QNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSEN 166
NL+ + N +SG IP + +S+N+L G +P F L NL + LS N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207
Query: 167 KLSGEIPSSLGSCIRLEQLVMNGN---FFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKY 223
L G+ GS +++ + N F G + S + + LDL N + G +P+
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQG 263
Query: 224 FENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGNDNLCG 266
FL LN+SFN+ GE+P G + N LCG
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 5/159 (3%)
Query: 112 LDLSKNNLSGT--IPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLS 169
LDLS NL IP+ + LP + N L GP+P L L + ++ +S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 170 GEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENF-L 228
G IP L L L + N G +P S SSL + + N +SG IP + +F
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 229 FLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 267
+ +S N G++P F+N + +D + N+ G
Sbjct: 175 LFTSMTISRNRLTGKIP--PTFANLNLAFVDLSRNMLEG 211
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 51/172 (29%)
Query: 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSXXXXXXXXXXXXXXXXQFTGRIPGSIGDLQKL 61
+P++ G+ S ++++ N+L TG+IP + +L
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRL------------------------TGKIPPTFANL--- 197
Query: 62 QRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSG 121
+LA +D + NMLEG G +N + L+KN+L+
Sbjct: 198 ----------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235
Query: 122 TIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIP 173
+ +GL L+L N++ G LP LK L +++S N L GEIP
Sbjct: 236 DL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 12/189 (6%)
Query: 58 LQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENML--EGSIPSSLGKCQNLILLDLS 115
L+ L+RL NK G S +L SL LD + N L +G S +L LDLS
Sbjct: 324 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 116 KNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGI---LKNLGVISLSENKLSGEI 172
N + T+ + +GL +L+ + L S F + L+NL + +S
Sbjct: 382 FNGVI-TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 173 PSSLGSCIRLEQLVMNGNFFRGN-IPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQ 231
LE L M GN F+ N +P F+ LR + LDLS+ L P F + LQ
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 232 KLNLSFNHF 240
LN+S N+F
Sbjct: 498 VLNMSHNNF 506
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Query: 82 LTSLAILDFAE-NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140
L L LDF N+ + S S +NLI LD+S + GL S + L ++
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV-LKMA 453
Query: 141 QNQLN-GPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSS 199
N LP F L+NL + LS+ +L P++ S L+ L M+ N F
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 200 FSSLRGIEKLDLSRNNLSGRIPKYFENF 227
+ L ++ LD S N++ + ++F
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHF 541
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 12/189 (6%)
Query: 58 LQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENML--EGSIPSSLGKCQNLILLDLS 115
L+ L+RL NK G S +L SL LD + N L +G S +L LDLS
Sbjct: 348 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405
Query: 116 KNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGI---LKNLGVISLSENKLSGEI 172
N + T+ + +GL +L+ + L S F + L+NL + +S
Sbjct: 406 FNGVI-TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAF 461
Query: 173 PSSLGSCIRLEQLVMNGNFFRGN-IPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQ 231
LE L M GN F+ N +P F+ LR + LDLS+ L P F + LQ
Sbjct: 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521
Query: 232 KLNLSFNHF 240
LN+S N+F
Sbjct: 522 VLNMSHNNF 530
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 82 LTSLAILDFAE-NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140
L L LDF N+ + S S +NLI LD+S + GL S + L ++
Sbjct: 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV-LKMA 477
Query: 141 QNQLN-GPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSS 199
N LP F L+NL + LS+ +L P++ S L+ L M+ N F
Sbjct: 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537
Query: 200 FSSLRGIEKLDLSRNNLSGRIPKYFENF-LFLQKLNLSFNHF 240
+ L ++ LD S N++ + ++F L LNL+ N F
Sbjct: 538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 6/166 (3%)
Query: 112 LDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGE 171
LDL L+ GL + +LNL NQL F L LG + L+ N+L+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLT-WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 172 IPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQ 231
+L++L + GN + F L +++L L+ N L F+ LQ
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 232 KLNLSFNHFEGEVPIKGVFS---NSSAISLDGNDNLCGGISDLHLS 274
L+LS N + VP G F I+L GN C L+LS
Sbjct: 159 TLSLSTNQLQS-VP-HGAFDRLGKLQTITLFGNQFDCSRCETLYLS 202
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 6/166 (3%)
Query: 112 LDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGE 171
LDL L+ GL + +LNL NQL F L LG + L+ N+L+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLT-WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 172 IPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQ 231
+L++L + GN + F L +++L L+ N L F+ LQ
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 232 KLNLSFNHFEGEVPIKGVFS---NSSAISLDGNDNLCGGISDLHLS 274
L+LS N + VP G F I+L GN C L+LS
Sbjct: 159 TLSLSTNQLQS-VP-HGAFDRLGKLQTITLFGNQFDCSRCEILYLS 202
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 79/184 (42%), Gaps = 10/184 (5%)
Query: 63 RLWLKGNKFWGEIPSSIGNLTSLAILDFAENML--EGSIPSSLGKCQNLILLDLSKNNLS 120
RL L+ NK LT L L + N L +G S +L LDLS N +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 121 GTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGI---LKNLGVISLSENKLSGEIPSSLG 177
T+ + +GL +L+ + L S F + L+NL + +S
Sbjct: 92 -TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 178 SCIRLEQLVMNGNFFRGN-IPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLS 236
LE L M GN F+ N +P F+ LR + LDLS+ L P F + LQ LN+S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 237 FNHF 240
N+F
Sbjct: 208 HNNF 211
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 82 LTSLAILDFAE-NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140
L L LDF N+ + S S +NLI LD+S + GL S + L ++
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV-LKMA 158
Query: 141 QNQLN-GPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSS 199
N LP F L+NL + LS+ +L P++ S L+ L M+ N F
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
Query: 200 FSSLRGIEKLDLSRNNLSGRIPKYFENF-LFLQKLNLSFNHF 240
+ L ++ LD S N++ + ++F L LNL+ N F
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 23/147 (15%)
Query: 122 TIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSC-- 179
++PT G+PS + L L N+L F L L +SLS N LS + G C
Sbjct: 21 SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK-----GCCSQ 72
Query: 180 -------IRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQK 232
++ L NG + S+F L +E LD +NL + F FL L+
Sbjct: 73 SDFGTTSLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRN 127
Query: 233 L-NLSFNHFEGEVPIKGVFSNSSAISL 258
L L +H V G+F+ S++ +
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEV 154
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 92/205 (44%), Gaps = 14/205 (6%)
Query: 58 LQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENML--EGSIPSSLGKCQNLILLDLS 115
L+ L+RL NK G S +L SL LD + N L +G S +L LDLS
Sbjct: 324 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 116 KNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGI---LKNLGVISLSENKLSGEI 172
N + T+ + +GL +L+ + L S F + L+NL + +S
Sbjct: 382 FNGVI-TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 173 PSSLGSCIRLEQLVMNGNFFRGN-IPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQ 231
LE L M GN F+ N +P F+ LR + LDLS+ L P F + LQ
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 232 KLNLSFNHFEGEVPIKGVFSNSSAI 256
LN++ N + VP G+F +++
Sbjct: 498 VLNMASNQLKS-VP-DGIFDRLTSL 520
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 3/143 (2%)
Query: 82 LTSLAILDFAE-NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140
L L LDF N+ + S S +NLI LD+S + GL S + L ++
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV-LKMA 453
Query: 141 QNQLN-GPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSS 199
N LP F L+NL + LS+ +L P++ S L+ L M N +
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Query: 200 FSSLRGIEKLDLSRNNLSGRIPK 222
F L ++K+ L N P+
Sbjct: 514 FDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 324 PSALLASVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382
P L + R S L A+D FS +N++G G FG VYKG L TLVAVK L E
Sbjct: 18 PEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADG---TLVAVKRLKEE 73
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 7/194 (3%)
Query: 62 QRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKN-NLS 120
QR++L GN+ +S + +L IL N L G ++ L LDLS N L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 121 GTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCI 180
PT GL L+L + L P F L L + L +N L ++
Sbjct: 94 VVDPTTFRGLGHLHT-LHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLG 152
Query: 181 RLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENF-----LFLQKLNL 235
L L ++GN +F L +++L L +N+++ P F + L+L NL
Sbjct: 153 NLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Query: 236 SFNHFEGEVPIKGV 249
S E VP++ +
Sbjct: 213 SMLPAEVLVPLRSL 226
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 122 TIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIR 181
+PT G+P+ S + L N+++ ++F +NL ++ L N L+G ++
Sbjct: 24 AVPT---GIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTL 80
Query: 182 LEQLVMNGNF-FRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHF 240
LEQL ++ N R P++F L + L L R L P F LQ L L N+
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL 140
Query: 241 EG 242
+
Sbjct: 141 QA 142
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 51 IPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLI 110
I +I L RL+L GN E+P+ I NL++L +LD + N L S+P+ LG C L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLK 296
Query: 111 LLDLSKNNLSGTIPTE 126
+N+ T+P E
Sbjct: 297 YFYFF-DNMVTTLPWE 311
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 136 YLNLSQNQLNG----PLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNF 191
Y L++ LNG LP+ L NL V+ LS N+L+ +P+ LGSC +L+ N
Sbjct: 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNM 304
Query: 192 FRGNIPSSFSSLRGIEKLDLSRNNLSGRIPK 222
+P F +L ++ L + N L + K
Sbjct: 305 V-TTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 123 IPTEVIGLPSFSIYLNLSQNQLNGPLPSN--FGILKNLGVISLSENKLSGEIPSSLGSCI 180
IP ++ P + L L+ N+L G + S+ FG L +L + L N+L+G P++
Sbjct: 23 IPRDI---PLHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 181 RLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHF 240
+++L + N + F L ++ L+L N +S +P FE+ L LNL+ N F
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Query: 241 EGEVPIKGVFSNSSAISLDGNDNLCGGISDL 271
+ SL+G CG S +
Sbjct: 139 NCNCHLAWFAEWLRKKSLNGGAARCGAPSKV 169
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 153 GILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLS 212
G+ + + + LS N+++ S L C+ L+ LV+ N SFSSL +E LDLS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 213 RNNLSGRIPKYFENFLFLQKLNL 235
N LS +F+ L LNL
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNL 131
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 153 GILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLS 212
G+ + + + LS N+++ S L C+ L+ LV+ N SFSSL +E LDLS
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 213 RNNLSGRIPKYFENFLFLQKLNL 235
N LS +F+ L LNL
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNL 105
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 324 PSALLASVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383
P L + R S L A+D F +N++G G FG VYKG L LVAVK L E
Sbjct: 10 PEVHLGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADG---XLVAVKRLKEER 66
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 22/157 (14%)
Query: 74 EIPSSIGNLTSL--------AILDFAENML-----EGSIPSSLGKCQNLILLDLSKNNLS 120
E+ NLT+L IL +EN+L +P + NL +L+K +
Sbjct: 14 EVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73
Query: 121 GTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCI 180
GT+P V+G L+LS NQL LP L L V+ +S N+L+ +L
Sbjct: 74 GTLP--VLGT------LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 181 RLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLS 217
L++L + GN + P + +EKL L+ NNL+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 86 AILDFAENML-----EGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140
IL +EN+L +P + NL +L+K + GT+P V+G L+LS
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP--VLG------TLDLS 85
Query: 141 QNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSF 200
NQL LP L L V+ +S N+L+ +L L++L + GN + P
Sbjct: 86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 201 SSLRGIEKLDLSRNNLS 217
+ +EKL L+ NNL+
Sbjct: 145 TPTPKLEKLSLANNNLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 86 AILDFAENML-----EGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140
IL +EN+L +P + NL +L+K + GT+P V+G L+LS
Sbjct: 35 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP--VLG------TLDLS 86
Query: 141 QNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSF 200
NQL LP L L V+ +S N+L+ +L L++L + GN + P
Sbjct: 87 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 145
Query: 201 SSLRGIEKLDLSRNNLS 217
+ +EKL L+ NNL+
Sbjct: 146 TPTPKLEKLSLANNNLT 162
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 22/157 (14%)
Query: 74 EIPSSIGNLTSL--------AILDFAENML-----EGSIPSSLGKCQNLILLDLSKNNLS 120
E+ NLT+L IL +EN+L +P + NL +L+K +
Sbjct: 14 EVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73
Query: 121 GTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCI 180
GT+P V+G L+LS NQL LP L L V+ +S N+L+ +L
Sbjct: 74 GTLP--VLG------TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 181 RLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLS 217
L++L + GN + P + +EKL L+ NNL+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 22/157 (14%)
Query: 74 EIPSSIGNLTSL--------AILDFAENML-----EGSIPSSLGKCQNLILLDLSKNNLS 120
E+ NLT+L IL +EN+L +P + NL +L+K +
Sbjct: 14 EVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73
Query: 121 GTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCI 180
GT+P V+G L+LS NQL LP L L V+ +S N+L+ +L
Sbjct: 74 GTLP--VLG------TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 181 RLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLS 217
L++L + GN + P + +EKL L+ NNL+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 9/194 (4%)
Query: 51 IPGSI-GDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGK-CQN 108
IP +I D +KL L+ NK + LT L +L +N L+ ++P+ + K +N
Sbjct: 31 IPSNIPADTKKLD---LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 109 LILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKL 168
L L ++ N L +P V L L +NQL P F L L +SL N+L
Sbjct: 87 LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 169 SGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPK-YFENF 227
L++L + N + +F L ++ L L N L R+P+ F++
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSL 204
Query: 228 LFLQKLNLSFNHFE 241
L+ L L N ++
Sbjct: 205 EKLKMLQLQENPWD 218
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 8/154 (5%)
Query: 112 LDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSN-FGILKNLGVISLSENKLSG 170
LDL N LS ++P++ + L L+ N+L LP+ F LKNL + +++NKL
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQA 99
Query: 171 EIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFL 230
+ L +L ++ N + P F SL + L L N L F+ L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 231 QKLNLSFNHFEGEVPIKGVFSNSS---AISLDGN 261
++L L N + VP +G F + + LD N
Sbjct: 160 KELRLYNNQLK-RVP-EGAFDKLTELKTLKLDNN 191
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 86 AILDFAENML-----EGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140
IL +EN+L +P + NL +L+K + GT+P V+G L+LS
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP--VLGT------LDLS 85
Query: 141 QNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSF 200
NQL LP L L V+ +S N+L+ +L L++L + GN + P
Sbjct: 86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 201 SSLRGIEKLDLSRNNLS 217
+ +EKL L+ N+L+
Sbjct: 145 TPTPKLEKLSLANNDLT 161
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 22/208 (10%)
Query: 58 LQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKN 117
LQ + WL W + + N TS+ LD + N + S+ +
Sbjct: 192 LQDMNEYWLG----WEKCGNPFKN-TSITTLDLSGNGFKESMAKRFF------------D 234
Query: 118 NLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGV--ISLSENKLSGEIPSS 175
++GT +I S+++ + P F L+ GV LS++K+ + S
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294
Query: 176 LGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNL 235
LEQL + N ++F L + KL+LS+N L + FEN L+ L+L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 236 SFNHFE--GEVPIKGVFSNSSAISLDGN 261
S+NH G+ G+ N ++LD N
Sbjct: 355 SYNHIRALGDQSFLGL-PNLKELALDTN 381
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 137 LNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCI-RLEQLVMNGNFFRGN 195
L L+QN++N + F L +L ++LS+N L G I S + + +LE L ++ N R
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRAL 362
Query: 196 IPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVP 245
SF L +++L L N L F+ LQK+ L N ++ P
Sbjct: 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 138 NLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIP 197
+LS++++ L S F +L ++L++N+++ ++ L +L ++ NF G+I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339
Query: 198 SS-FSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAI 256
S F +L +E LDLS N++ + F L++L L N + VP G+F +++
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VP-DGIFDRLTSL 397
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 128 IGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVM 187
+G+P+ S + L N+++ ++F +NL ++ L N L+ ++ LEQL +
Sbjct: 27 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 86
Query: 188 NGNF-FRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEG 242
+ N R P++F L + L L R L P F LQ L L N +
Sbjct: 87 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 142
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 128 IGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVM 187
+G+P+ S + L N+++ ++F +NL ++ L N L+ ++ LEQL +
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 188 NGNF-FRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEG 242
+ N R P++F L + L L R L P F LQ L L N +
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 26/189 (13%)
Query: 52 PGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLIL 111
PG+ L KL+RL+L N+ E+P + +L L EN + S +I+
Sbjct: 93 PGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 112 LDLSKNNLSGT----------------------IPTEVIGLPSFSIYLNLSQNQLNGPLP 149
++L N L + I T GLP L+L N++
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 150 SNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKL 209
++ L NL + LS N +S SL + L +L +N N +P + + I+ +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 210 DLSRNNLSG 218
L NN+S
Sbjct: 269 YLHNNNISA 277
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 130 LPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNG 189
LP + L+L N++ +F LKNL + L NK+S P + ++LE+L ++
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 190 NFFR---GNIPSSFSSLR 204
N + +P + LR
Sbjct: 110 NQLKELPEKMPKTLQELR 127
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 26/189 (13%)
Query: 52 PGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLIL 111
PG+ L KL+RL+L N+ E+P + +L L EN + S +I+
Sbjct: 93 PGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 112 LDLSKNNLSGT----------------------IPTEVIGLPSFSIYLNLSQNQLNGPLP 149
++L N L + I T GLP L+L N++
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 150 SNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKL 209
++ L NL + LS N +S SL + L +L +N N +P + + I+ +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 210 DLSRNNLSG 218
L NN+S
Sbjct: 269 YLHNNNISA 277
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 130 LPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNG 189
LP + L+L N++ +F LKNL + L NK+S P + ++LE+L ++
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 190 NFFR---GNIPSSFSSLR 204
N + +P + LR
Sbjct: 110 NQLKELPEKMPKTLQELR 127
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 86 AILDFAENML-----EGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140
IL +EN+L +P + NL +L+K + GT+P V+G L+LS
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP--VLGT------LDLS 85
Query: 141 QNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSF 200
NQL LP L L V+ +S N+L+ +L L++L + GN + P
Sbjct: 86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 201 SSLRGIEKLDLSRNNLS 217
+ +EKL L+ N L+
Sbjct: 145 TPTPKLEKLSLANNQLT 161
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
Query: 13 LGKLSVAENQLFGNIPSXXXXXXXXXXXXXXXXQFTGRIPGSIGDLQKLQRLWLKGNKFW 72
LG L ++ NQL ++P + T G++ L +LQ L+LKGN+
Sbjct: 79 LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 73 GEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIG 129
P + L L A N L L +NL L L +N+L TIP G
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 86 AILDFAENML-----EGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140
IL +EN+L +P + NL +L+K + GT+P V+G L+LS
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP--VLGT------LDLS 85
Query: 141 QNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSF 200
NQL LP L L V+ +S N+L+ +L L++L + GN + P
Sbjct: 86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 201 SSLRGIEKLDLSRNNLS 217
+ +EKL L+ N L+
Sbjct: 145 TPTPKLEKLSLANNQLT 161
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
Query: 13 LGKLSVAENQLFGNIPSXXXXXXXXXXXXXXXXQFTGRIPGSIGDLQKLQRLWLKGNKFW 72
LG L ++ NQL ++P + T G++ L +LQ L+LKGN+
Sbjct: 79 LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 73 GEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIG 129
P + L L A N L L +NL L L +N+L TIP G
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 86 AILDFAENML-----EGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140
IL +EN+L +P + NL +L+K + GT+P V+G L+LS
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP--VLG------TLDLS 85
Query: 141 QNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSF 200
NQL LP L L V+ +S N+L+ +L L++L + GN + P
Sbjct: 86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 201 SSLRGIEKLDLSRNNLS 217
+ +EKL L+ N L+
Sbjct: 145 TPTPKLEKLSLANNQLT 161
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
Query: 13 LGKLSVAENQLFGNIPSXXXXXXXXXXXXXXXXQFTGRIPGSIGDLQKLQRLWLKGNKFW 72
LG L ++ NQL ++P + T G++ L +LQ L+LKGN+
Sbjct: 79 LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 73 GEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIG 129
P + L L A N L L +NL L L +N+L TIP G
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 333 RVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
RV E LF D IG GSFG VYKGI H + +VA+K+++L
Sbjct: 14 RVDPEELFTKLDR------IGKGSFGEVYKGIDNHT--KEVVAIKIIDL 54
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 111 LLDLSKNNLSGT----IPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSEN 166
LLDLS NNLS PT + L S L LS N LN F + NL + LS N
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHS----LLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 167 KLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIP 221
L LE L++ N ++F + ++KL LS+N +S R P
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 86 AILDFAENML-----EGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140
IL +EN+L +P + NL +L+K + GT+P V+G L+LS
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP--VLG------TLDLS 85
Query: 141 QNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSF 200
NQL LP L L V+ +S N+L+ +L L++L + GN + P
Sbjct: 86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 201 SSLRGIEKLDLSRNNLS 217
+ +EKL L+ N L+
Sbjct: 145 TPTPKLEKLSLANNQLT 161
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
Query: 13 LGKLSVAENQLFGNIPSXXXXXXXXXXXXXXXXQFTGRIPGSIGDLQKLQRLWLKGNKFW 72
LG L ++ NQL ++P + T G++ L +LQ L+LKGN+
Sbjct: 79 LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 73 GEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIG 129
P + L L A N L L +NL L L +N+L TIP G
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 3/124 (2%)
Query: 122 TIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIR 181
++PT G+PS + L L N+L F L L +SLS+N++ +
Sbjct: 21 SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 182 LEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFE 241
L L ++ N + F L +++L L N L F+ LQK+ L N ++
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137
Query: 242 GEVP 245
P
Sbjct: 138 CSCP 141
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 313 QSKSKREPATPP-SALLASVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHE 371
Q + EP TP A ++LR+ E FK ++G+G+FG+VYKG+ + +
Sbjct: 23 QERELVEPLTPSGEAPNQALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEK 76
Query: 372 TLVAVKVLNLEHGGASK 388
+ V ++ L + K
Sbjct: 77 VKIPVAIMELREATSPK 93
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 96 EGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGIL 155
+ S +L CQN+ L ++P G+P+ L L+ NQ+ P F L
Sbjct: 9 QCSCDQTLVNCQNIRL---------ASVPA---GIPTDKQRLWLNNNQITKLEPGVFDHL 56
Query: 156 KNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN- 214
NL + + NKL+ +L QL +N N + +F +L+ + + L N
Sbjct: 57 VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
Query: 215 -NLSGRIPKYFENFL 228
+ R Y N++
Sbjct: 117 WDCECRDIMYLRNWV 131
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 153 GILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLS 212
GI + + L+ N+++ P + L+QL N N F L + +LDL+
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 213 RNNLSGRIPK-YFENFLFLQKLNLSFNHFEGEV 244
N+L IP+ F+N L + L N ++ E
Sbjct: 90 DNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCEC 121
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 46 QFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSI-GNLTSLAILDFAENMLEGSIP 100
Q T PG L LQ+L+ NK IP+ + LT L LD +N L+ SIP
Sbjct: 44 QITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDNHLK-SIP 97
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 62 QRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSG 121
QRLWL N+ P +L +L L F N L K L LDL+ N+L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK- 94
Query: 122 TIP 124
+IP
Sbjct: 95 SIP 97
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGI---LTHDDHETLVAVKVLN 380
A + ++ +G GSFG VY+G+ + D+ ET VA+K +N
Sbjct: 8 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 49
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 333 RVSYENLFKATDGFSLENLIGAGSFGSVYKGIL 365
RV +L +AT+ F + LIG G FG VYKG+L
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVL 60
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGI---LTHDDHETLVAVKVLN 380
A + ++ +G GSFG VY+G+ + D+ ET VA+K +N
Sbjct: 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 64
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 333 RVSYENLFKATDGFSLENLIGAGSFGSVYKGIL 365
RV +L +AT+ F + LIG G FG VYKG+L
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVL 60
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGI---LTHDDHETLVAVKVLN 380
A + ++ +G GSFG VY+G+ + D+ ET VA+K +N
Sbjct: 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 64
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGI---LTHDDHETLVAVKVLN 380
A + ++ +G GSFG VY+G+ + D+ ET VA+K +N
Sbjct: 10 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 51
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGI---LTHDDHETLVAVKVLN 380
A + ++ +G GSFG VY+G+ + D+ ET VA+K +N
Sbjct: 10 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 51
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGI---LTHDDHETLVAVKVLN 380
A + ++ +G GSFG VY+G+ + D+ ET VA+K +N
Sbjct: 17 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 58
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGI---LTHDDHETLVAVKVLN 380
A + ++ +G GSFG VY+G+ + D+ ET VA+K +N
Sbjct: 16 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 57
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGI---LTHDDHETLVAVKVLN 380
A + ++ +G GSFG VY+G+ + D+ ET VA+K +N
Sbjct: 14 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 55
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGI---LTHDDHETLVAVKVLN 380
A + ++ +G GSFG VY+G+ + D+ ET VA+K +N
Sbjct: 13 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 54
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGI---LTHDDHETLVAVKVLN 380
A + ++ +G GSFG VY+G+ + D+ ET VA+K +N
Sbjct: 16 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 57
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGI---LTHDDHETLVAVKVLN 380
A + ++ +G GSFG VY+G+ + D+ ET VA+K +N
Sbjct: 17 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 58
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGI---LTHDDHETLVAVKVLN 380
A + ++ +G GSFG VY+G+ + D+ ET VA+K +N
Sbjct: 45 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 86
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 157 NLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNL 216
NLG+ +L + IP+ L + +RLE+L ++GN P SF L + KL L +
Sbjct: 162 NLGMCNLKD------IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 217 SGRIPKYFENFLFLQKLNLSFNHF 240
+ F++ L++LNLS N+
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNL 238
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 130 LPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNG 189
+P + YLNL +N + F L++L ++ LS+N + + L L +
Sbjct: 33 IPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFD 92
Query: 190 NFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKY-FENFLFLQKLNL 235
N +F L + +L L RNN IP Y F L++L+L
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWL-RNNPIESIPSYAFNRVPSLRRLDL 138
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 136 YLNLSQNQLNGPLPSN-FGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRG 194
YL L+ NQL LP+ F L NL + L EN+L L L + N +
Sbjct: 89 YLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS 147
Query: 195 NIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSS 254
F L + +LDL N L F+ L++L+L+ N + VP GVF +
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VP-DGVFDRLT 205
Query: 255 AIS 257
+++
Sbjct: 206 SLT 208
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 5/161 (3%)
Query: 55 IGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSL-GKCQNLILLD 113
I L ++ L L GNK +I S++ LT+L L N L+ S+P+ + K NL L
Sbjct: 59 IQYLPNVRYLALGGNKL-HDI-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 114 LSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIP 173
L +N L ++P V + YL L NQL F L NL + L N+L
Sbjct: 116 LVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Query: 174 SSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN 214
+L+QL +N N + F L + + L N
Sbjct: 175 GVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Query: 54 SIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLD 113
++ +L L L L GN+ LT+L L EN L+ K NL L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 114 LSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKL 168
L N L ++P V + L+L NQL F L L +SL++N+L
Sbjct: 140 LYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 157 NLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNL 216
NLG+ +L + IP+ L + +RLE+L ++GN P SF L + KL L +
Sbjct: 162 NLGMCNLKD------IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 217 SGRIPKYFENFLFLQKLNLSFNHF 240
+ F++ L++LNLS N+
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNL 238
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 129 GLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMN 188
+P + YLNL +N + F L++L ++ LS+N + + L L +
Sbjct: 32 SIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELF 91
Query: 189 GNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKY-FENFLFLQKLNL 235
N +F L + +L L RNN IP Y F L++L+L
Sbjct: 92 DNRLTTVPTQAFEYLSKLRELWL-RNNPIESIPSYAFNRVPSLRRLDL 138
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 53 GSIGDLQKLQRLWLKGNKFWGEIPSSIGN-LTSLAILDFAENMLEGSIPSSL-GKCQNLI 110
G +L L +L+L GNK +P+ + N LTSL L+ + N L+ S+P+ + K L
Sbjct: 46 GVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLK 103
Query: 111 LLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSG 170
L L+ N L ++P V + L L QNQL F L +L I L +N
Sbjct: 104 ELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162
Query: 171 EIP 173
P
Sbjct: 163 TCP 165
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 112 LDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSN-FGILKNLGVISLSENKLSG 170
LDL N+L ++P V + L L N+L LP+ F L +L ++LS N+L
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 171 EIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFL 230
+L++L +N N + F L ++ L L +N L F+ L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 231 QKLNLSFNHFEGEVP 245
Q + L N ++ P
Sbjct: 151 QYIWLHDNPWDCTCP 165
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 12/156 (7%)
Query: 122 TIPTEVIGLPSFSIYLNLSQNQLNGPLPSN-FGILKNLGVISLSENKLSGEIPSSLGSCI 180
++PT G+P+ + YL+L N L LP+ F L +L + L NKL
Sbjct: 21 SVPT---GIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 181 RLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHF 240
L L ++ N + F L +++L L+ N L F+ L+ L L N
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 241 EGEVPIKGVFSNSSA---ISLDGN--DNLCGGISDL 271
+ VP GVF ++ I L N D C GI L
Sbjct: 137 K-SVP-DGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 170
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
+ +IGAG FG VYKG+L + V V + L+ G K
Sbjct: 49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEK 88
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%)
Query: 129 GLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMN 188
G+P+ + L+L +N++ F +L + L+EN +S P + + L L +
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88
Query: 189 GNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFN 238
N + F+ L + KLD+S N + + F++ L+ L + N
Sbjct: 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 152 FGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDL 211
F L NL ++L+ L EIP+ L I+L++L ++GN P SF L ++KL +
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 212 SRNNLSGRIPKYFENFLFLQKLNLSFNHF 240
++ + F+N L ++NL+ N+
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 32/186 (17%)
Query: 74 EIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSF 133
E+P I T+ +L+ EN ++ +S ++L +L LS+N++ GL +
Sbjct: 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 134 SIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSG-------EIPS----SLGSCIRL 182
+ L L N+L F L L + L N + IPS LG RL
Sbjct: 115 NT-LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173
Query: 183 EQLVMNGNFFRG---------------NIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENF 227
+ F G IP + + L +++LDLS N+LS P F+
Sbjct: 174 SYISEGA--FEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 228 LFLQKL 233
+ LQKL
Sbjct: 231 MHLQKL 236
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 88 LDFAENMLEGSIPSSLGKCQNLILLDLSKNNLS-----GTIPTEVIGLPSFSIYLNLSQN 142
LDF+ N+L ++ + G L L L N L + T++ L L++SQN
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ----LDISQN 384
Query: 143 QLN-GPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFS 201
++ + K+L +++S N L+ I L R++ L ++ N + IP
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIKS-IPKQVV 441
Query: 202 SLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVP 245
L +++L+++ N L F+ LQK+ L N ++ P
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 39/168 (23%)
Query: 111 LLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSG 170
L+D SKN L +P + L + LN+SQN ++ S+ L L ++ +S N++
Sbjct: 4 LVDRSKNGLIH-VPKD---LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58
Query: 171 EIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFL 230
++ + F+ N + +E LDLS N L + + L
Sbjct: 59 ---------------YLDISVFKFN--------QELEYLDLSHNKL---VKISCHPTVNL 92
Query: 231 QKLNLSFNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISDLHLSTCSI 278
+ L+LSFN F+ +PI F N S + G+S HL S+
Sbjct: 93 KHLDLSFNAFDA-LPICKEFGNMSQLKF-------LGLSTTHLEKSSV 132
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 24/114 (21%)
Query: 129 GLPSFSIYLNLSQNQLNGPLPSNFG------------------------ILKNLGVISLS 164
LPS LNL+ NQL P+NF IL L V++L
Sbjct: 22 DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 165 ENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSG 218
N+LS + C L +L + N + F + + + KLDLS N LS
Sbjct: 82 HNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 319 EPATPP-SALLASVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETL---V 374
EP TP +A + LR+ E K ++G+G+FG+VYKGI + ET+ V
Sbjct: 18 EPLTPSGTAPNQAQLRILKETELKRV------KVLGSGAFGTVYKGIWVPEG-ETVKIPV 70
Query: 375 AVKVLN 380
A+K+LN
Sbjct: 71 AIKILN 76
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 1/144 (0%)
Query: 54 SIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLD 113
++ +L L L L GN+ LT+L L EN L+ K NL L+
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 114 LSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIP 173
L+ N L ++P V + L+LS NQL F L L + L +N+L
Sbjct: 140 LAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 174 SSLGSCIRLEQLVMNGNFFRGNIP 197
L+ + ++ N + P
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 1/145 (0%)
Query: 101 SSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGV 160
S+L + NL L L+ N L ++P V + L L +NQL F L NL
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 161 ISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRI 220
++L+ N+L L +L ++ N + F L ++ L L +N L
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 221 PKYFENFLFLQKLNLSFNHFEGEVP 245
F+ LQ + L N ++ P
Sbjct: 198 DGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 153 GILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLS 212
G+ + + LS NK++ L +C L+ L++ + +F SL +E LDLS
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 213 RNNLSGRIPKYFENFLFLQKLNLSFNHFE 241
N+LS +F L+ LNL N ++
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 84 SLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQ 143
S+ +L+ + NML GS+ L + +LDL NN +IP +V L + LN++ NQ
Sbjct: 429 SILVLNLSSNMLTGSVFRCLPP--KVKVLDL-HNNRIMSIPKDVTHLQALQ-ELNVASNQ 484
Query: 144 LNGPLPSNFGILKNLGVISLSENKLSGEIP 173
L F L +L I L +N P
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 89 DFAENMLEGS----IPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQL 144
D E L+G+ +P L ++L L+DLS N +S T+ + + + L LS N+L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL 90
Query: 145 NGPLPSNFGILKNLGVISLSENKLS 169
P F LK+L ++SL N +S
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 182 LEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFE 241
+ +L ++GN F +P S+ + + +DLS N +S + F N L L LS+N
Sbjct: 33 VTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 242 GEVPIKGV--FSNSSAISLDGND 262
+P + + +SL GND
Sbjct: 92 C-IPPRTFDGLKSLRLLSLHGND 113
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 153 GILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLS 212
G+ + + LS NK++ L +C L+ L++ + +F SL +E LDLS
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 213 RNNLSGRIPKYFENFLFLQKLNLSFNHFE 241
N+LS +F L+ LNL N ++
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 32 IGSGSFGTVYKGKWHGD-----VAVKMLNV 56
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 32 IGSGSFGTVYKGKWHGD-----VAVKMLNV 56
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 20 IGSGSFGTVYKGKWHGD-----VAVKMLNV 44
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 44 IGSGSFGTVYKGKWHGD-----VAVKMLNV 68
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 36 IGSGSFGTVYKGKWHGD-----VAVKMLNV 60
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 43 IGSGSFGTVYKGKWHGD-----VAVKMLNV 67
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 44 IGSGSFGTVYKGKWHGD-----VAVKMLNV 68
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
D L LIG G +G+VYKG L E VAVKV +
Sbjct: 13 DNLKLLELIGRGRYGAVYKGSLD----ERPVAVKVFSF 46
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 21 IGSGSFGTVYKGKWHGD-----VAVKMLNV 45
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 16 IGSGSFGTVYKGKWHGD-----VAVKMLNV 40
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 18 IGSGSFGTVYKGKWHGD-----VAVKMLNV 42
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 21 IGSGSFGTVYKGKWHGD-----VAVKMLNV 45
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 16 IGSGSFGTVYKGKWHGD-----VAVKMLNV 40
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG+GSFG+VYKG D VAVK+LN+
Sbjct: 16 IGSGSFGTVYKGKWHGD-----VAVKMLNV 40
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
F L L+G G++G VYKG H L A+KV+++
Sbjct: 26 FELVELVGNGTYGQVYKG--RHVKTGQLAAIKVMDV 59
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 11 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 63
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 17 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 69
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 10 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 62
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 10 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 62
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 9 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 61
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 8 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 60
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 9 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 61
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 9 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 61
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 11 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 63
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 10 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 62
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 9 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 61
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 129 GLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMN 188
G+PS + YLNL +N + F L +L V+ L N + + L L +
Sbjct: 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131
Query: 189 GNFFRGNIPS-SFSSLRGIEKLDLSRNNLSGRIPKY-FENFLFLQKLNL 235
N+ IPS +F L + +L L RNN IP Y F L +L+L
Sbjct: 132 DNWLTV-IPSGAFEYLSKLRELWL-RNNPIESIPSYAFNRVPSLMRLDL 178
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 182 LEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFN 238
LE+L M+GN F P SF L ++KL + + +S F+ L +LNL+ N
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 32 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 84
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 14 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 66
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 14 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 66
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 7 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 59
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 7 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 59
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 4/34 (11%)
Query: 350 NLIGAGSFGSVYKGILTHDDHETL---VAVKVLN 380
++G+G+FG+VYKGI + ET+ VA+K+LN
Sbjct: 21 KVLGSGAFGTVYKGIWVPEG-ETVKIPVAIKILN 53
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 7 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 59
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 10 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 62
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 7 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 59
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 9 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 61
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 13 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 65
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 8 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 60
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 7 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 59
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 4 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 56
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGASK 388
++LR+ E FK ++G+G+FG+VYKG+ + + + V + L + K
Sbjct: 1 ALLRILKETEFKKI------KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPK 53
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 348 LENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
L IG+GSFG+VYKG D VAVK+L +
Sbjct: 40 LSTRIGSGSFGTVYKGKWHGD-----VAVKILKV 68
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 350 NLIGAGSFGSVYKGILTHDDH--ETLVAVKVLN 380
++G+G+FG+VYKGI D + VA+KVL
Sbjct: 23 KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLR 55
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 338 NLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
N+ + F+ IG GSFG V+KGI + + +VA+K+++L
Sbjct: 17 NIADPEELFTKLERIGKGSFGEVFKGI--DNRTQQVVAIKIIDL 58
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 58 LQKLQRLWLKGNKF-WGEI--PSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDL 114
L LQ L L+GN F G I +S+ L L IL + L + + + +DL
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 115 SKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKL 168
S N L+ + + L IYLNL+ N ++ LPS IL I+L +N L
Sbjct: 508 SHNRLTSSSIEALSHLKG--IYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 25/194 (12%)
Query: 49 GRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPS-SLGKCQ 107
+P + L L++L L NKF S N SL L N + + L +
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 108 NLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENK 167
NL LDLS +++ S NL QL L +L ++LS N+
Sbjct: 351 NLRELDLSHDDIET------------SDCCNL---QLRN--------LSHLQSLNLSYNE 387
Query: 168 LSGEIPSSLGSCIRLEQLVMNGNFFR-GNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFEN 226
+ C +LE L + + + S F +L ++ L+LS + L + F+
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447
Query: 227 FLFLQKLNLSFNHF 240
LQ LNL NHF
Sbjct: 448 LPALQHLNLQGNHF 461
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 337 ENL-FKATDG---FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
ENL F++ D F+ IG GSFG V+KGI + + +VA+K+++L
Sbjct: 16 ENLYFQSMDPEELFTKLEKIGKGSFGEVFKGI--DNRTQKVVAIKIIDL 62
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382
F + +G GS+GSVYK I H + +VA+K + +E
Sbjct: 31 FDVLEKLGEGSYGSVYKAI--HKETGQIVAIKQVPVE 65
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG GSFG V+KGI + + +VA+K+++L
Sbjct: 15 IGKGSFGEVFKGI--DNRTQKVVAIKIIDL 42
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG GSFG V+KGI + + +VA+K+++L
Sbjct: 30 IGKGSFGEVFKGI--DNRTQKVVAIKIIDL 57
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
IG GSFG V+KGI + + +VA+K+++L
Sbjct: 15 IGKGSFGEVFKGI--DNRTQKVVAIKIIDL 42
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 129 GLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSL-GSCIRLEQLVM 187
G+P+ + L L NQ+ P F L NL + L N+L G +P + S +L L +
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL 95
Query: 188 NGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK 247
N + F L +++L + N L+ +P+ E L L L N + +P
Sbjct: 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IP-H 152
Query: 248 GVFSNSSAIS 257
G F S+++
Sbjct: 153 GAFDRLSSLT 162
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 46 QFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSI-GNLTSLAILDFAENMLEGSIPSSL- 103
Q T PG L L+ L+L N+ G +P + +LT L +LD N L +PS++
Sbjct: 51 QITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVF 108
Query: 104 GKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQL 144
+ +L L + N L+ +P + L + +L L QNQL
Sbjct: 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLT-HLALDQNQL 147
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 123 IPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRL 182
IPT LP + L QN + P F K L I LS N++S P + L
Sbjct: 26 IPT---NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 183 EQLVMNGN 190
LV+ GN
Sbjct: 83 NSLVLYGN 90
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 152 FGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDL 211
F LK+L V++L+ NK++ + L+ L ++ N S+F L + +DL
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 212 SRNNLSGRIPKYFENFLFLQKLNLSFN-----HFEGEVP 245
+N+++ + F+ LQ L+L N HF +P
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 121 GTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCI 180
++PT G+P+ + L L N++ P F L L + L N+L+
Sbjct: 22 ASVPT---GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 181 RLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN 214
+L QL +N N + +F +LR + + L N
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 123 IPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRL 182
IPT LP + L QN + P F K L I LS N++S P + L
Sbjct: 26 IPT---NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 183 EQLVMNGN 190
LV+ GN
Sbjct: 83 NSLVLYGN 90
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 112 LDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGE 171
+D S +L+ ++PT G+P+ + L L NQ+ P F L L + L N+L+
Sbjct: 22 VDCSGKSLA-SVPT---GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 77
Query: 172 IPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN 214
+L QL +N N + +F +L+ + + L N
Sbjct: 78 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 112 LDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGE 171
+D S +L+ ++PT G+P+ + L L NQ+ P F L L + L N+L+
Sbjct: 14 VDCSGKSLA-SVPT---GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 172 IPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN 214
+L QL +N N + +F +L+ + + L N
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGILTHDDHETL-VAVK 377
A + L ++G G FG VY+G+ T+ E + VAVK
Sbjct: 22 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVK 58
>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147
pdb|3NIE|B Chain B, Crystal Structure Of Pf11_0147
Length = 429
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 341 KATDGFSLENLIGAGSFGSVYKGILTHDDHETL-VAVKVLN 380
K D + +++LIG GS+G VY L +D + VA+K +N
Sbjct: 25 KVPDNYEIKHLIGRGSYGYVY---LAYDKNANKNVAIKKVN 62
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGILTHDDHETL-VAVK 377
A + L ++G G FG VY+G+ T+ E + VAVK
Sbjct: 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVK 46
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGILTHDDHETL-VAVK 377
A + L ++G G FG VY+G+ T+ E + VAVK
Sbjct: 6 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVK 42
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 332 LRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETL-VAVKVLN 380
L+ E++ F+L ++G G FGSV + L +D + VAVK+L
Sbjct: 11 LKEKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLK 60
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 55 IGDLQKLQRLWLKGNKFWG------EIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQN 108
+ L L+ L LKGN F + ++G+L L + ++ SLGK +
Sbjct: 442 LAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSH 501
Query: 109 LILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKL 168
+ DLS N+L+ + L IYLNL+ N +N P IL I+LS N L
Sbjct: 502 V---DLSHNSLTCDSIDSLSHLKG--IYLNLAANSINIISPRLLPILSQQSTINLSHNPL 556
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
A + E IG G FG V+KG L D +++VA+K L L
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKD--KSVVAIKSLIL 54
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
A + E IG G FG V+KG L D +++VA+K L L
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKD--KSVVAIKSLIL 54
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 342 ATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381
A + E IG G FG V+KG L D +++VA+K L L
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKD--KSVVAIKSLIL 54
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 3/143 (2%)
Query: 79 IGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLN 138
+ NL L L+ + N G + +C L LLD++ +L P LN
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 139 LSQNQLNGPLPSNFGILKNLGVISLSENKL-SGEIPSS--LGSCIRLEQLVMNGNFFRGN 195
LS L+ L++L ++L N G I + L LE L+++
Sbjct: 431 LSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSI 490
Query: 196 IPSSFSSLRGIEKLDLSRNNLSG 218
+F LR + LDLS N+L+G
Sbjct: 491 DQQAFHGLRNVNHLDLSHNSLTG 513
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 348 LENLIGAGSFGSVYKGILTHDDHETL-VAVKVLNLE 382
L ++G G FGSV +G L +D +L VAVK + L+
Sbjct: 38 LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLD 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,611,104
Number of Sequences: 62578
Number of extensions: 417967
Number of successful extensions: 1765
Number of sequences better than 100.0: 160
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 311
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)