Query 042573
Match_columns 388
No_of_seqs 316 out of 4276
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 07:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-41 2.3E-46 347.9 28.5 368 3-382 349-726 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.3E-31 7.2E-36 271.0 20.6 261 2-265 300-585 (968)
3 KOG4194 Membrane glycoprotein 99.9 5E-29 1.1E-33 222.0 0.6 254 7-263 146-428 (873)
4 KOG4194 Membrane glycoprotein 99.9 6.2E-28 1.4E-32 215.1 2.9 259 2-262 117-403 (873)
5 KOG0444 Cytoskeletal regulator 99.9 6.5E-27 1.4E-31 210.5 -0.9 259 2-268 95-379 (1255)
6 KOG4237 Extracellular matrix p 99.9 1.3E-25 2.8E-30 191.5 -3.9 240 8-247 64-365 (498)
7 KOG0444 Cytoskeletal regulator 99.9 1.3E-24 2.9E-29 195.8 -3.0 232 2-241 47-304 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 1.2E-24 2.6E-29 186.1 -7.2 248 3-263 61-309 (565)
9 KOG0472 Leucine-rich repeat pr 99.9 8.7E-24 1.9E-28 180.9 -5.5 255 1-264 197-541 (565)
10 KOG4237 Extracellular matrix p 99.8 1.2E-21 2.6E-26 167.4 -0.8 231 35-266 67-361 (498)
11 PLN03210 Resistant to P. syrin 99.8 1.2E-18 2.6E-23 179.5 19.0 247 2-261 580-856 (1153)
12 PLN03210 Resistant to P. syrin 99.8 2E-18 4.3E-23 177.8 20.1 248 2-260 604-902 (1153)
13 KOG0618 Serine/threonine phosp 99.8 2.4E-21 5.3E-26 181.8 -3.9 240 13-262 221-487 (1081)
14 KOG0617 Ras suppressor protein 99.8 8.2E-21 1.8E-25 144.5 -1.9 164 31-201 29-193 (264)
15 PRK15370 E3 ubiquitin-protein 99.8 2E-18 4.4E-23 167.1 10.5 226 10-264 198-428 (754)
16 KOG0618 Serine/threonine phosp 99.8 2.2E-20 4.8E-25 175.5 -3.4 225 9-240 239-488 (1081)
17 KOG0617 Ras suppressor protein 99.8 1.9E-20 4E-25 142.5 -4.1 165 5-177 28-193 (264)
18 PRK15387 E3 ubiquitin-protein 99.7 1.3E-17 2.8E-22 160.7 13.3 213 2-245 216-462 (788)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.8E-19 3.9E-24 161.7 -0.8 237 5-243 18-293 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 1E-17 2.2E-22 162.3 9.4 212 2-242 214-429 (754)
21 cd00116 LRR_RI Leucine-rich re 99.7 4.2E-19 9.1E-24 159.4 -1.0 247 15-262 2-289 (319)
22 PRK15387 E3 ubiquitin-protein 99.7 1.1E-15 2.3E-20 147.6 14.3 221 13-264 203-458 (788)
23 PLN03150 hypothetical protein; 99.5 6.5E-14 1.4E-18 135.3 10.6 117 158-277 420-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 9.2E-15 2E-19 131.3 -2.9 194 39-243 54-249 (722)
25 PLN03150 hypothetical protein; 99.4 2E-12 4.4E-17 125.0 11.6 111 135-245 421-532 (623)
26 KOG3207 Beta-tubulin folding c 99.4 5.4E-14 1.2E-18 122.6 0.2 210 32-243 118-341 (505)
27 KOG0532 Leucine-rich repeat (L 99.3 5.8E-14 1.3E-18 126.3 -3.1 178 2-190 90-270 (722)
28 COG4886 Leucine-rich repeat (L 99.3 2.6E-12 5.6E-17 118.7 7.4 198 39-246 97-295 (394)
29 COG4886 Leucine-rich repeat (L 99.3 3.6E-12 7.9E-17 117.7 7.0 201 15-225 97-298 (394)
30 KOG1909 Ran GTPase-activating 99.2 6.8E-13 1.5E-17 112.7 -3.0 228 13-241 32-311 (382)
31 KOG3207 Beta-tubulin folding c 99.2 1.3E-12 2.9E-17 114.0 -1.4 210 8-219 119-341 (505)
32 KOG1259 Nischarin, modulator o 99.2 4.3E-12 9.3E-17 105.9 0.6 134 104-244 281-415 (490)
33 PF14580 LRR_9: Leucine-rich r 99.1 3.3E-11 7.2E-16 95.9 4.4 84 152-236 60-148 (175)
34 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.8E-16 103.1 1.5 204 9-220 180-415 (490)
35 PF14580 LRR_9: Leucine-rich r 99.1 4.1E-11 8.9E-16 95.4 3.8 83 33-120 17-101 (175)
36 PF13855 LRR_8: Leucine rich r 99.1 1.4E-10 3E-15 76.0 3.6 58 13-70 3-60 (61)
37 PF13855 LRR_8: Leucine rich r 99.0 2.4E-10 5.1E-15 74.9 3.8 60 35-94 1-60 (61)
38 KOG4658 Apoptotic ATPase [Sign 99.0 1.7E-10 3.6E-15 114.4 4.3 226 13-241 547-807 (889)
39 KOG0531 Protein phosphatase 1, 99.0 7.4E-11 1.6E-15 109.3 0.5 215 13-241 74-290 (414)
40 KOG1187 Serine/threonine prote 99.0 9E-10 2E-14 99.3 5.7 53 330-385 61-113 (361)
41 KOG1909 Ran GTPase-activating 98.9 1.3E-10 2.9E-15 99.0 -2.6 210 5-217 53-311 (382)
42 KOG0531 Protein phosphatase 1, 98.9 3.8E-10 8.2E-15 104.6 -0.3 223 6-243 91-320 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.8 7.4E-10 1.6E-14 109.9 1.3 200 12-218 524-731 (889)
44 KOG0196 Tyrosine kinase, EPH ( 98.8 5.5E-09 1.2E-13 98.1 4.0 59 330-388 606-674 (996)
45 KOG2982 Uncharacterized conser 98.7 4.8E-09 1E-13 87.8 1.3 90 6-95 66-158 (418)
46 KOG1859 Leucine-rich repeat pr 98.7 1.1E-10 2.4E-15 108.5 -9.8 181 52-243 102-294 (1096)
47 KOG1859 Leucine-rich repeat pr 98.6 1.6E-09 3.4E-14 101.0 -4.4 126 135-266 167-294 (1096)
48 KOG2982 Uncharacterized conser 98.5 2.2E-08 4.7E-13 84.0 0.3 213 32-245 42-266 (418)
49 KOG2120 SCF ubiquitin ligase, 98.5 9.1E-10 2E-14 92.1 -8.4 177 36-214 186-373 (419)
50 KOG2120 SCF ubiquitin ligase, 98.4 2.2E-09 4.8E-14 89.8 -7.3 180 10-192 184-375 (419)
51 KOG4579 Leucine-rich repeat (L 98.4 1.3E-08 2.8E-13 75.4 -3.1 106 137-245 58-163 (177)
52 KOG3653 Transforming growth fa 98.3 1.2E-06 2.6E-11 78.2 4.9 30 349-382 215-244 (534)
53 KOG4579 Leucine-rich repeat (L 98.2 4.3E-08 9.4E-13 72.7 -4.2 105 13-120 29-136 (177)
54 KOG1644 U2-associated snRNP A' 98.1 4.5E-06 9.8E-11 66.4 5.4 103 135-239 45-151 (233)
55 COG5238 RNA1 Ran GTPase-activa 98.1 8.3E-07 1.8E-11 73.7 0.5 42 79-120 88-133 (388)
56 PRK15386 type III secretion pr 98.0 2E-05 4.3E-10 71.0 8.1 57 31-93 48-104 (426)
57 PF12799 LRR_4: Leucine Rich r 98.0 4.2E-06 9.2E-11 50.1 2.3 35 13-48 3-37 (44)
58 KOG1644 U2-associated snRNP A' 98.0 9.2E-06 2E-10 64.7 4.6 125 13-142 21-150 (233)
59 PF13306 LRR_5: Leucine rich r 97.9 3.3E-05 7.1E-10 59.1 6.9 98 13-115 14-111 (129)
60 PF13306 LRR_5: Leucine rich r 97.9 3.9E-05 8.5E-10 58.7 7.1 126 27-159 4-129 (129)
61 COG5238 RNA1 Ran GTPase-activa 97.9 4.8E-06 1E-10 69.3 1.5 141 101-242 86-256 (388)
62 PRK15386 type III secretion pr 97.8 6.8E-05 1.5E-09 67.6 8.0 136 56-215 49-188 (426)
63 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.7E-10 47.0 3.3 36 205-241 2-37 (44)
64 KOG1025 Epidermal growth facto 97.8 0.00015 3.2E-09 69.7 9.7 37 348-384 700-738 (1177)
65 KOG2052 Activin A type IB rece 97.6 0.00029 6.3E-09 63.0 8.7 30 348-381 215-244 (513)
66 KOG3665 ZYG-1-like serine/thre 97.6 2.2E-05 4.7E-10 76.7 1.5 104 13-118 124-231 (699)
67 KOG0193 Serine/threonine prote 97.6 4E-05 8.6E-10 70.9 2.4 41 332-384 387-427 (678)
68 KOG2123 Uncharacterized conser 97.5 7.7E-06 1.7E-10 68.4 -2.2 96 135-234 22-123 (388)
69 KOG3665 ZYG-1-like serine/thre 97.5 3.6E-05 7.8E-10 75.2 1.4 132 35-169 122-263 (699)
70 KOG2739 Leucine-rich acidic nu 97.3 0.00011 2.3E-09 61.2 1.2 108 27-139 35-150 (260)
71 KOG2123 Uncharacterized conser 97.2 6.7E-06 1.5E-10 68.7 -5.9 97 13-113 21-123 (388)
72 PLN03224 probable serine/threo 97.1 0.00044 9.6E-09 65.3 3.5 41 342-382 143-197 (507)
73 KOG2739 Leucine-rich acidic nu 97.0 0.00048 1E-08 57.4 2.6 110 51-165 35-152 (260)
74 KOG0658 Glycogen synthase kina 97.0 0.00078 1.7E-08 58.8 3.7 37 346-384 26-62 (364)
75 KOG1026 Nerve growth factor re 96.7 0.00053 1.2E-08 66.2 0.6 40 346-385 488-530 (774)
76 PLN03225 Serine/threonine-prot 96.7 0.0033 7.1E-08 60.9 6.0 40 342-381 130-171 (566)
77 KOG0580 Serine/threonine prote 96.4 0.0034 7.3E-08 51.8 3.5 38 343-382 21-58 (281)
78 PTZ00284 protein kinase; Provi 96.2 0.0034 7.3E-08 59.6 3.0 43 337-381 122-164 (467)
79 PRK09188 serine/threonine prot 96.2 0.0059 1.3E-07 55.3 4.4 39 342-381 16-54 (365)
80 PF00560 LRR_1: Leucine Rich R 96.1 0.0032 6.9E-08 31.2 1.2 20 13-33 2-21 (22)
81 KOG1095 Protein tyrosine kinas 96.1 0.0032 6.9E-08 63.3 2.0 38 349-386 697-737 (1025)
82 KOG0577 Serine/threonine prote 96.0 0.0027 5.8E-08 59.2 1.2 39 346-386 28-66 (948)
83 KOG0663 Protein kinase PITSLRE 95.9 0.0029 6.3E-08 54.8 0.9 38 344-383 76-113 (419)
84 KOG0194 Protein tyrosine kinas 95.7 0.01 2.3E-07 55.0 3.7 33 349-381 162-196 (474)
85 KOG0192 Tyrosine kinase specif 95.7 0.0082 1.8E-07 54.3 2.9 31 350-383 47-77 (362)
86 PF00560 LRR_1: Leucine Rich R 95.6 0.0057 1.2E-07 30.3 1.0 10 62-71 3-12 (22)
87 cd05104 PTKc_Kit Catalytic dom 95.6 0.0095 2.1E-07 54.8 3.1 39 344-382 35-76 (375)
88 KOG1947 Leucine rich repeat pr 95.6 0.001 2.2E-08 63.3 -3.5 14 178-191 360-373 (482)
89 PTZ00036 glycogen synthase kin 95.6 0.013 2.9E-07 55.1 3.9 38 343-382 65-102 (440)
90 KOG0605 NDR and related serine 95.5 0.011 2.5E-07 54.4 3.2 39 342-382 139-177 (550)
91 cd06639 STKc_myosinIIIB Cataly 95.3 0.014 3E-07 51.5 2.9 46 334-381 12-57 (291)
92 PF14575 EphA2_TM: Ephrin type 95.2 0.0098 2.1E-07 40.1 1.4 20 330-349 53-72 (75)
93 KOG0694 Serine/threonine prote 95.2 0.022 4.8E-07 54.1 3.9 39 343-383 367-405 (694)
94 cd05106 PTKc_CSF-1R Catalytic 95.1 0.017 3.6E-07 53.1 2.9 39 344-382 38-79 (374)
95 KOG1094 Discoidin domain recep 95.1 0.045 9.8E-07 51.3 5.5 32 350-384 544-575 (807)
96 cd06638 STKc_myosinIIIA Cataly 95.0 0.016 3.4E-07 50.9 2.5 47 334-382 8-54 (286)
97 cd05622 STKc_ROCK1 Catalytic d 95.0 0.022 4.7E-07 52.3 3.3 44 336-381 35-78 (371)
98 cd05621 STKc_ROCK2 Catalytic d 94.9 0.023 4.9E-07 52.1 3.4 42 338-381 37-78 (370)
99 cd05105 PTKc_PDGFR_alpha Catal 94.9 0.023 4.9E-07 52.7 3.3 40 343-382 36-78 (400)
100 PTZ00283 serine/threonine prot 94.9 0.018 3.9E-07 55.0 2.6 39 341-382 29-68 (496)
101 KOG0600 Cdc2-related protein k 94.9 0.013 2.7E-07 53.8 1.4 31 350-383 123-154 (560)
102 PTZ00426 cAMP-dependent protei 94.8 0.027 5.8E-07 51.0 3.6 36 345-381 31-66 (340)
103 cd05107 PTKc_PDGFR_beta Cataly 94.8 0.025 5.5E-07 52.4 3.4 39 344-382 37-78 (401)
104 KOG0199 ACK and related non-re 94.8 0.02 4.3E-07 54.8 2.6 34 350-384 116-151 (1039)
105 cd05596 STKc_ROCK Catalytic do 94.8 0.018 3.9E-07 52.9 2.3 38 342-381 41-78 (370)
106 PHA02988 hypothetical protein; 94.8 0.04 8.6E-07 48.4 4.3 44 331-383 12-55 (283)
107 KOG1947 Leucine rich repeat pr 94.7 0.0027 5.8E-08 60.4 -3.5 31 200-230 358-389 (482)
108 PTZ00263 protein kinase A cata 94.6 0.034 7.4E-07 50.1 3.6 37 344-382 18-54 (329)
109 smart00090 RIO RIO-like kinase 94.3 0.055 1.2E-06 46.1 4.0 34 346-382 30-65 (237)
110 KOG4257 Focal adhesion tyrosin 94.3 0.018 3.9E-07 54.3 1.1 39 345-384 390-431 (974)
111 PLN00034 mitogen-activated pro 94.3 0.041 8.8E-07 50.1 3.4 32 349-382 79-110 (353)
112 TIGR01982 UbiB 2-polyprenylphe 94.1 0.051 1.1E-06 50.9 3.6 31 349-382 122-152 (437)
113 KOG4341 F-box protein containi 93.9 0.0027 5.8E-08 56.6 -4.7 63 7-70 161-227 (483)
114 KOG4308 LRR-containing protein 93.9 0.00023 5E-09 66.6 -12.1 180 61-241 89-303 (478)
115 KOG4236 Serine/threonine prote 93.8 0.044 9.6E-07 50.7 2.6 33 349-383 569-601 (888)
116 KOG0591 NIMA (never in mitosis 93.8 0.0094 2E-07 50.6 -1.5 31 350-383 25-56 (375)
117 KOG0197 Tyrosine kinases [Sign 93.7 0.058 1.3E-06 49.7 3.2 42 332-383 201-242 (468)
118 cd07876 STKc_JNK2 Catalytic do 93.7 0.076 1.6E-06 48.5 3.9 37 344-382 21-57 (359)
119 KOG4308 LRR-containing protein 93.5 0.00045 9.6E-09 64.7 -11.0 108 13-120 89-217 (478)
120 KOG0473 Leucine-rich repeat pr 93.5 0.0018 3.9E-08 53.1 -6.1 89 29-120 36-124 (326)
121 PF08693 SKG6: Transmembrane a 93.5 0.046 9.9E-07 31.3 1.3 30 286-315 9-38 (40)
122 PHA03209 serine/threonine kina 93.4 0.1 2.2E-06 47.6 4.3 37 343-381 65-101 (357)
123 cd07875 STKc_JNK1 Catalytic do 93.3 0.11 2.3E-06 47.5 4.3 38 343-382 23-60 (364)
124 cd06635 STKc_TAO1 Catalytic do 93.2 0.1 2.2E-06 46.6 4.0 35 346-382 27-61 (317)
125 PRK09605 bifunctional UGMP fam 93.1 0.16 3.5E-06 49.1 5.3 29 340-368 329-357 (535)
126 KOG1006 Mitogen-activated prot 93.1 0.03 6.6E-07 47.2 0.3 43 333-384 60-102 (361)
127 PF03109 ABC1: ABC1 family; I 93.0 0.025 5.4E-07 42.3 -0.3 32 349-383 16-47 (119)
128 cd05055 PTKc_PDGFR Catalytic d 93.0 0.1 2.2E-06 46.4 3.5 39 344-382 35-76 (302)
129 KOG0473 Leucine-rich repeat pr 92.9 0.002 4.3E-08 52.9 -6.7 88 54-145 37-124 (326)
130 KOG1035 eIF-2alpha kinase GCN2 92.7 0.032 6.9E-07 56.7 -0.1 36 344-382 479-515 (1351)
131 PF13504 LRR_7: Leucine rich r 92.5 0.075 1.6E-06 24.3 1.1 7 15-21 5-11 (17)
132 PHA03207 serine/threonine kina 92.2 0.16 3.5E-06 47.0 3.8 38 345-382 93-130 (392)
133 cd06633 STKc_TAO3 Catalytic do 92.1 0.21 4.6E-06 44.5 4.5 35 346-382 23-57 (313)
134 cd06656 STKc_PAK3 Catalytic do 92.0 0.19 4E-06 44.5 3.9 36 344-382 19-55 (297)
135 smart00370 LRR Leucine-rich re 91.7 0.18 3.9E-06 25.9 2.1 21 204-224 2-22 (26)
136 smart00369 LRR_TYP Leucine-ric 91.7 0.18 3.9E-06 25.9 2.1 21 204-224 2-22 (26)
137 PRK04750 ubiB putative ubiquin 91.5 0.19 4.1E-06 48.1 3.5 34 345-382 121-155 (537)
138 KOG0575 Polo-like serine/threo 91.4 0.21 4.5E-06 47.1 3.6 34 346-382 20-54 (592)
139 KOG0598 Ribosomal protein S6 k 91.3 0.1 2.3E-06 46.0 1.5 39 343-383 24-62 (357)
140 smart00370 LRR Leucine-rich re 91.2 0.18 4E-06 25.9 1.9 14 35-48 2-15 (26)
141 smart00369 LRR_TYP Leucine-ric 91.2 0.18 4E-06 25.9 1.9 14 35-48 2-15 (26)
142 KOG4258 Insulin/growth factor 91.1 0.097 2.1E-06 51.1 1.2 31 334-365 985-1015(1025)
143 KOG0667 Dual-specificity tyros 91.1 0.22 4.8E-06 47.3 3.5 32 349-382 191-222 (586)
144 PHA03212 serine/threonine kina 91.0 0.22 4.9E-06 46.0 3.5 36 344-381 92-127 (391)
145 cd06659 STKc_PAK6 Catalytic do 91.0 0.19 4.1E-06 44.4 3.0 31 350-382 27-57 (297)
146 PHA03211 serine/threonine kina 91.0 0.23 4.9E-06 47.0 3.5 35 343-379 168-202 (461)
147 KOG4278 Protein tyrosine kinas 90.7 0.11 2.3E-06 49.4 1.1 45 337-383 260-304 (1157)
148 cd06654 STKc_PAK1 Catalytic do 90.7 0.38 8.1E-06 42.5 4.5 37 345-383 21-57 (296)
149 KOG0032 Ca2+/calmodulin-depend 90.3 0.33 7.2E-06 44.5 3.9 33 349-383 40-72 (382)
150 cd06647 STKc_PAK_I Catalytic d 90.3 0.38 8.2E-06 42.4 4.2 36 344-382 19-55 (293)
151 TIGR00864 PCC polycystin catio 90.3 0.18 3.8E-06 56.1 2.4 38 210-247 1-38 (2740)
152 cd06614 STKc_PAK Catalytic dom 89.7 0.39 8.4E-06 42.1 3.8 41 341-383 16-56 (286)
153 KOG3864 Uncharacterized conser 89.7 0.031 6.7E-07 45.1 -2.8 80 37-116 103-185 (221)
154 KOG1166 Mitotic checkpoint ser 89.6 0.17 3.8E-06 51.3 1.6 40 338-380 692-731 (974)
155 cd06655 STKc_PAK2 Catalytic do 89.3 0.4 8.7E-06 42.3 3.6 37 345-383 20-56 (296)
156 KOG1027 Serine/threonine prote 89.3 0.1 2.2E-06 51.0 -0.2 36 344-383 509-545 (903)
157 KOG1024 Receptor-like protein 89.2 0.79 1.7E-05 41.2 5.1 39 343-381 283-324 (563)
158 cd05098 PTKc_FGFR1 Catalytic d 89.1 0.32 7E-06 43.1 2.8 38 345-382 19-61 (307)
159 cd06648 STKc_PAK_II Catalytic 89.0 0.41 8.9E-06 42.0 3.4 34 346-381 21-54 (285)
160 KOG1167 Serine/threonine prote 89.0 0.14 3E-06 46.0 0.3 37 344-381 36-74 (418)
161 PF13516 LRR_6: Leucine Rich r 88.8 0.14 3.1E-06 25.7 0.2 17 204-220 2-18 (24)
162 cd06657 STKc_PAK4 Catalytic do 88.8 0.38 8.1E-06 42.4 3.0 30 350-381 26-55 (292)
163 cd06658 STKc_PAK5 Catalytic do 88.7 0.4 8.7E-06 42.2 3.2 31 350-382 28-58 (292)
164 KOG0581 Mitogen-activated prot 88.6 0.76 1.6E-05 40.8 4.6 41 333-382 75-115 (364)
165 KOG1989 ARK protein kinase fam 88.2 0.49 1.1E-05 46.5 3.5 34 347-382 40-73 (738)
166 KOG0664 Nemo-like MAPK-related 87.9 0.21 4.5E-06 42.4 0.7 34 345-380 54-87 (449)
167 PF02439 Adeno_E3_CR2: Adenovi 87.4 0.95 2.1E-05 25.5 2.9 9 290-298 8-16 (38)
168 KOG0660 Mitogen-activated prot 86.7 0.5 1.1E-05 41.8 2.4 33 346-380 24-56 (359)
169 KOG0615 Serine/threonine prote 86.6 0.71 1.5E-05 41.7 3.3 33 349-383 177-209 (475)
170 KOG0200 Fibroblast/platelet-de 85.9 0.53 1.2E-05 46.3 2.4 44 342-385 294-342 (609)
171 KOG0592 3-phosphoinositide-dep 85.4 0.37 8E-06 45.0 1.0 42 340-383 69-110 (604)
172 COG2112 Predicted Ser/Thr prot 85.2 0.96 2.1E-05 36.2 3.0 31 349-383 27-57 (201)
173 KOG4341 F-box protein containi 85.1 0.39 8.4E-06 43.4 1.0 131 12-143 295-437 (483)
174 KOG3864 Uncharacterized conser 84.9 0.2 4.4E-06 40.6 -0.8 34 204-237 151-185 (221)
175 KOG1165 Casein kinase (serine/ 84.6 0.75 1.6E-05 40.5 2.5 31 345-378 29-60 (449)
176 PHA03210 serine/threonine kina 84.4 0.43 9.3E-06 45.8 1.1 24 344-367 148-171 (501)
177 PRK10359 lipopolysaccharide co 84.1 0.92 2E-05 38.3 2.7 36 344-383 31-66 (232)
178 KOG0582 Ste20-like serine/thre 84.0 0.99 2.1E-05 41.3 3.0 37 346-384 28-64 (516)
179 KOG0986 G protein-coupled rece 83.5 0.17 3.7E-06 46.2 -1.9 37 344-382 185-221 (591)
180 KOG1164 Casein kinase (serine/ 83.2 1.7 3.8E-05 38.9 4.4 37 345-382 19-55 (322)
181 KOG0574 STE20-like serine/thre 83.1 0.11 2.4E-06 44.6 -3.1 31 350-382 39-69 (502)
182 COG0661 AarF Predicted unusual 82.7 0.82 1.8E-05 43.6 2.1 31 350-383 131-161 (517)
183 KOG0696 Serine/threonine prote 82.2 0.65 1.4E-05 42.0 1.1 37 345-383 350-386 (683)
184 KOG0610 Putative serine/threon 82.0 0.46 1E-05 42.9 0.2 32 350-383 83-114 (459)
185 KOG4721 Serine/threonine prote 81.3 0.33 7.2E-06 45.7 -1.0 29 350-382 130-158 (904)
186 KOG0983 Mitogen-activated prot 79.1 1.8 3.8E-05 37.2 2.6 31 350-382 98-128 (391)
187 cd06636 STKc_MAP4K4_6 Catalyti 79.0 1.3 2.9E-05 38.5 2.1 34 334-367 6-39 (282)
188 KOG0984 Mitogen-activated prot 78.6 0.87 1.9E-05 37.3 0.7 41 340-382 42-82 (282)
189 PF01102 Glycophorin_A: Glycop 78.4 1.9 4.1E-05 32.1 2.4 20 289-308 65-84 (122)
190 PTZ00267 NIMA-related protein 78.3 2.2 4.9E-05 40.6 3.5 35 346-381 69-103 (478)
191 KOG0666 Cyclin C-dependent kin 77.7 0.7 1.5E-05 40.2 -0.0 38 346-383 26-65 (438)
192 smart00365 LRR_SD22 Leucine-ri 77.6 2.2 4.7E-05 22.0 1.7 14 83-96 2-15 (26)
193 KOG0578 p21-activated serine/t 77.5 2.7 5.8E-05 39.6 3.6 37 346-384 275-311 (550)
194 KOG0585 Ca2+/calmodulin-depend 77.4 2.5 5.5E-05 39.1 3.3 38 343-382 96-133 (576)
195 KOG1151 Tousled-like protein k 77.2 0.42 9.1E-06 43.6 -1.6 28 350-379 469-496 (775)
196 KOG1152 Signal transduction se 75.1 2.9 6.2E-05 39.9 3.1 36 346-383 563-598 (772)
197 KOG0612 Rho-associated, coiled 72.9 0.77 1.7E-05 47.0 -1.1 44 336-381 67-110 (1317)
198 PF08374 Protocadherin: Protoc 72.5 4.4 9.6E-05 33.1 3.2 9 287-295 36-44 (221)
199 smart00368 LRR_RI Leucine rich 71.4 2.8 6E-05 22.0 1.3 15 204-218 2-16 (28)
200 cd07877 STKc_p38alpha_MAPK14 C 71.3 5.2 0.00011 36.2 3.9 33 334-366 7-39 (345)
201 smart00364 LRR_BAC Leucine-ric 69.2 3.9 8.4E-05 21.1 1.4 14 204-217 2-15 (26)
202 KOG0616 cAMP-dependent protein 68.1 3.9 8.4E-05 35.6 2.1 35 346-382 46-80 (355)
203 PF05454 DAG1: Dystroglycan (D 67.4 1.8 3.8E-05 37.7 0.0 7 335-341 195-201 (290)
204 PF06365 CD34_antigen: CD34/Po 66.7 12 0.00026 30.7 4.5 29 288-316 101-129 (202)
205 PF04478 Mid2: Mid2 like cell 66.6 5 0.00011 31.0 2.2 11 344-354 112-122 (154)
206 KOG0690 Serine/threonine prote 66.0 2.4 5.2E-05 37.3 0.5 38 344-383 168-205 (516)
207 PF12191 stn_TNFRSF12A: Tumour 65.7 3.5 7.5E-05 30.5 1.2 9 275-283 66-74 (129)
208 PF02009 Rifin_STEVOR: Rifin/s 65.3 4 8.7E-05 35.8 1.8 15 303-317 272-286 (299)
209 KOG4242 Predicted myosin-I-bin 63.6 30 0.00066 32.4 6.9 36 206-241 415-453 (553)
210 PF05568 ASFV_J13L: African sw 63.4 6.2 0.00014 29.8 2.2 6 275-280 16-21 (189)
211 cd07874 STKc_JNK3 Catalytic do 62.3 4.5 9.8E-05 36.7 1.7 24 343-366 16-39 (355)
212 KOG0198 MEKK and related serin 60.5 5.9 0.00013 35.2 1.9 23 345-367 18-40 (313)
213 PF08114 PMP1_2: ATPase proteo 60.3 13 0.00028 21.3 2.5 10 306-315 27-36 (43)
214 KOG4279 Serine/threonine prote 60.2 9.5 0.00021 37.6 3.3 30 351-382 582-611 (1226)
215 KOG3763 mRNA export factor TAP 58.8 4.4 9.4E-05 38.3 0.9 65 179-243 217-285 (585)
216 PHA03265 envelope glycoprotein 58.7 7.6 0.00016 34.3 2.2 15 302-316 362-376 (402)
217 KOG0587 Traf2- and Nck-interac 56.4 8.4 0.00018 38.7 2.4 49 335-386 10-59 (953)
218 KOG2345 Serine/threonine prote 55.9 3.6 7.8E-05 34.8 -0.1 35 346-383 23-58 (302)
219 KOG3763 mRNA export factor TAP 55.3 6.3 0.00014 37.4 1.3 66 154-219 216-285 (585)
220 PF05393 Hum_adeno_E3A: Human 50.8 25 0.00054 24.2 3.2 8 308-315 51-58 (94)
221 KOG1235 Predicted unusual prot 50.7 15 0.00032 35.3 3.0 49 330-382 136-196 (538)
222 PF12877 DUF3827: Domain of un 50.3 29 0.00063 33.7 4.7 11 288-298 269-279 (684)
223 KOG0611 Predicted serine/threo 49.8 6 0.00013 36.0 0.3 32 350-383 59-90 (668)
224 TIGR01477 RIFIN variant surfac 49.5 14 0.00029 33.1 2.4 29 289-317 311-340 (353)
225 PRK01723 3-deoxy-D-manno-octul 48.3 29 0.00063 29.5 4.2 29 349-381 36-65 (239)
226 PTZ00046 rifin; Provisional 47.6 15 0.00033 32.9 2.4 29 289-317 316-345 (358)
227 PF05545 FixQ: Cbb3-type cytoc 46.5 28 0.0006 21.1 2.8 8 307-314 26-33 (49)
228 cd07850 STKc_JNK Catalytic dom 46.0 12 0.00025 34.0 1.6 23 344-366 16-38 (353)
229 KOG0579 Ste20-like serine/thre 44.7 5.3 0.00012 38.7 -0.9 30 350-381 38-67 (1187)
230 smart00367 LRR_CC Leucine-rich 44.6 16 0.00035 18.4 1.3 11 59-69 2-12 (26)
231 KOG0586 Serine/threonine prote 43.6 28 0.0006 33.6 3.5 39 343-383 55-93 (596)
232 PF15050 SCIMP: SCIMP protein 43.5 25 0.00055 25.7 2.5 12 304-315 25-36 (133)
233 PF13095 FTA2: Kinetochore Sim 42.9 28 0.00061 28.8 3.1 31 344-378 37-68 (207)
234 PF01299 Lamp: Lysosome-associ 41.3 19 0.00042 32.0 2.1 10 308-317 291-300 (306)
235 KOG0695 Serine/threonine prote 41.2 9 0.0002 33.9 0.0 39 343-383 249-287 (593)
236 KOG4717 Serine/threonine prote 40.4 12 0.00026 35.4 0.7 32 347-382 21-54 (864)
237 PF05725 FNIP: FNIP Repeat; I 39.5 38 0.00083 19.8 2.6 10 9-18 10-19 (44)
238 PF07204 Orthoreo_P10: Orthore 38.9 25 0.00053 24.6 1.8 15 300-314 53-67 (98)
239 KOG0671 LAMMER dual specificit 38.8 8.7 0.00019 34.6 -0.4 35 346-382 91-125 (415)
240 PF13908 Shisa: Wnt and FGF in 38.7 28 0.0006 28.1 2.5 10 287-296 77-86 (179)
241 KOG1033 eIF-2alpha kinase PEK/ 36.7 7.4 0.00016 36.6 -1.2 37 343-381 48-84 (516)
242 PF05961 Chordopox_A13L: Chord 35.4 96 0.0021 20.2 3.9 8 308-315 19-26 (68)
243 TIGR01478 STEVOR variant surfa 35.2 40 0.00086 29.2 2.9 25 293-317 262-286 (295)
244 PHA03099 epidermal growth fact 34.0 58 0.0013 24.3 3.2 16 263-278 67-82 (139)
245 PTZ00370 STEVOR; Provisional 33.6 42 0.00092 29.1 2.8 25 293-317 258-282 (296)
246 PF12301 CD99L2: CD99 antigen 33.2 50 0.0011 26.3 3.0 30 286-315 112-141 (169)
247 PF15345 TMEM51: Transmembrane 33.2 62 0.0013 27.1 3.6 8 335-342 126-133 (233)
248 PF15102 TMEM154: TMEM154 prot 32.7 45 0.00097 25.7 2.6 11 307-317 80-90 (146)
249 KOG1290 Serine/threonine prote 32.7 52 0.0011 31.1 3.4 32 349-382 83-114 (590)
250 KOG0596 Dual specificity; seri 30.6 11 0.00024 35.9 -1.1 31 349-382 366-396 (677)
251 PF15176 LRR19-TM: Leucine-ric 30.1 67 0.0014 22.9 2.8 14 285-298 14-27 (102)
252 KOG0583 Serine/threonine prote 29.9 33 0.00072 31.5 1.8 22 344-365 17-38 (370)
253 PF14610 DUF4448: Protein of u 29.4 33 0.00072 27.9 1.6 9 308-316 177-185 (189)
254 COG0478 RIO-like serine/threon 28.9 72 0.0016 27.9 3.4 32 350-384 97-128 (304)
255 PF08374 Protocadherin: Protoc 28.7 1E+02 0.0022 25.6 4.0 15 284-298 37-51 (221)
256 PF14914 LRRC37AB_C: LRRC37A/B 28.4 68 0.0015 24.7 2.8 12 304-315 137-148 (154)
257 PF12768 Rax2: Cortical protei 28.0 89 0.0019 27.4 4.0 27 289-315 231-257 (281)
258 KOG4645 MAPKKK (MAP kinase kin 27.7 25 0.00054 37.4 0.7 37 343-381 1234-1270(1509)
259 TIGR00864 PCC polycystin catio 27.2 38 0.00081 39.2 1.9 32 17-48 1-32 (2740)
260 KOG1345 Serine/threonine kinas 27.1 37 0.00079 29.5 1.4 35 345-381 25-59 (378)
261 KOG0670 U4/U6-associated splic 26.9 56 0.0012 31.2 2.7 29 352-382 440-468 (752)
262 PHA03390 pk1 serine/threonine- 26.8 42 0.00091 28.8 1.9 17 350-366 22-38 (267)
263 PF06697 DUF1191: Protein of u 26.4 60 0.0013 28.2 2.6 19 286-304 211-229 (278)
264 PF10873 DUF2668: Protein of u 26.4 98 0.0021 23.7 3.4 12 287-298 63-74 (155)
265 PHA03049 IMV membrane protein; 25.3 1.9E+02 0.0041 18.8 3.9 7 309-315 20-26 (68)
266 KOG0668 Casein kinase II, alph 24.9 13 0.00027 31.3 -1.6 32 349-383 43-75 (338)
267 PF03302 VSP: Giardia variant- 24.1 59 0.0013 30.2 2.3 9 286-294 364-372 (397)
268 KOG0669 Cyclin T-dependent kin 23.9 8 0.00017 32.9 -2.9 29 350-379 23-51 (376)
269 PF11770 GAPT: GRB2-binding ad 23.0 46 0.001 25.6 1.1 10 304-313 23-32 (158)
270 KOG0584 Serine/threonine prote 22.7 38 0.00083 32.8 0.8 17 349-365 45-61 (632)
271 KOG0607 MAP kinase-interacting 22.1 38 0.00082 30.2 0.6 40 335-382 74-114 (463)
272 PF07010 Endomucin: Endomucin; 21.5 89 0.0019 26.0 2.5 10 373-382 238-247 (259)
273 PF02480 Herpes_gE: Alphaherpe 20.3 34 0.00074 32.1 0.0 12 287-298 354-365 (439)
274 PF09919 DUF2149: Uncharacteri 20.2 91 0.002 22.0 2.1 20 352-376 70-90 (92)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-41 Score=347.94 Aligned_cols=368 Identities=34% Similarity=0.515 Sum_probs=247.7
Q ss_pred ChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCC
Q 042573 3 PEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNL 82 (388)
Q Consensus 3 p~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 82 (388)
|..++.+++ |+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+++..|..|..+
T Consensus 349 p~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 349 PKNLGKHNN-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred ChHHhCCCC-CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence 334444433 4444444444444444444444445555555555544555555556666666666666665666666666
Q ss_pred CCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEE
Q 042573 83 TSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVIS 162 (388)
Q Consensus 83 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 162 (388)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ ....+ +.|++++|++++..|..+.++++|+.|+
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L-~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 505 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRL-ENLDLSRNQFSGAVPRKLGSLSELMQLK 505 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccc-eEEECcCCccCCccChhhhhhhccCEEE
Confidence 666666666666666666666666667777776666665555433 34556 7888888888888888899999999999
Q ss_pred cccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcc
Q 042573 163 LSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEG 242 (388)
Q Consensus 163 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~ 242 (388)
+++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+.+|+.+++++|++.+
T Consensus 506 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCCCCccccccCCCCCcCCCCCCCCCCCCccccccccccceeehhhhHHHHHHHHHHHHHHHHhhcccCCC-C-
Q 042573 243 EVPIKGVFSNSSAISLDGNDNLCGGISDLHLSTCSIKESKQSRRSLKLIIPVVTVILLVTGMSCFIITSWQSKSKRE-P- 320 (388)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~- 320 (388)
.+|..+.+..+....+.+|+..|+..+....++|..... ....+.+++++++++ ++++++++++++++++++.. .
T Consensus 586 ~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 662 (968)
T PLN00113 586 SLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRK--TPSWWFYITCTLGAF-LVLALVAFGFVFIRGRNNLELKR 662 (968)
T ss_pred eCCCcchhcccChhhhcCCccccCCccccCCCCCccccc--cceeeeehhHHHHHH-HHHHHHHHHHHHHHhhhcccccc
Confidence 999888888888888899999998765545556753211 112222222222222 22222222223333222111 0
Q ss_pred -CCCchhhh------hcccccCHHHHHHhhcCCCcCceeecCCCceEEEEEeC-CCCceeEEEEEEeecC
Q 042573 321 -ATPPSALL------ASVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILT-HDDHETLVAVKVLNLE 382 (388)
Q Consensus 321 -~~~~~~~~------~~~~~~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~-~g~~~~~vavK~l~~~ 382 (388)
........ .....++++++. ..|..+++||+|+||.||+|+.. +| . .||||+++..
T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~-~--~vavK~~~~~ 726 (968)
T PLN00113 663 VENEDGTWELQFFDSKVSKSITINDIL---SSLKEENVISRGKKGASYKGKSIKNG-M--QFVVKEINDV 726 (968)
T ss_pred cccccccccccccccccchhhhHHHHH---hhCCcccEEccCCCeeEEEEEECCCC-c--EEEEEEccCC
Confidence 00000000 011234555554 45778899999999999999984 44 3 8999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=3.3e-31 Score=270.95 Aligned_cols=261 Identities=38% Similarity=0.580 Sum_probs=182.8
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
+|..+.++++ |++|++++|.+++..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+..
T Consensus 300 ~p~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 300 IPELVIQLQN-LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CChhHcCCCC-CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 4556666665 777777777777666666777777777777777766666666666666667766666666555555555
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCC------------------------cCCCcCChhhhccCcccceE
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKN------------------------NLSGTIPTEVIGLPSFSIYL 137 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n------------------------~~~~~~~~~~~~~~~l~~~L 137 (388)
+++|+.|+++.|.+.+.+|..+..+++|+.|++++| .+.+..+..+..++.+ +.|
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L 457 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL-QML 457 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC-cEE
Confidence 555555555555555444444444445555555444 4444444444444554 555
Q ss_pred EccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCc
Q 042573 138 NLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLS 217 (388)
Q Consensus 138 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 217 (388)
++++|.+.+..|..+ ..++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++
T Consensus 458 ~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 458 SLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred ECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence 555555554444433 3356777777777777777888888899999999999999889999999999999999999999
Q ss_pred cccchhhhcCCCCcEEEcccccCcccCCCC-CcCCCCccccccCCCCCc
Q 042573 218 GRIPKYFENFLFLQKLNLSFNHFEGEVPIK-GVFSNSSAISLDGNDNLC 265 (388)
Q Consensus 218 ~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~~~~~c 265 (388)
+.+|..+..+++|+.|++++|++++.+|.. ..+..+..+++.+|+..+
T Consensus 537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999999887753 446677888888887544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=5e-29 Score=222.04 Aligned_cols=254 Identities=24% Similarity=0.274 Sum_probs=115.4
Q ss_pred hhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCC
Q 042573 7 GNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLA 86 (388)
Q Consensus 7 ~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 86 (388)
..+|. |+.|||+.|.|+.+.-.+|..-.++++|+|++|+|+..-.+.|.++.+|.+|.|+.|++++..+..|.++++|+
T Consensus 146 ~~l~a-lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 146 SALPA-LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred HhHhh-hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence 33443 44444444444433333444444455555555555444444444444555555555555444444454455555
Q ss_pred EEeccCCcccccCCcCCCCCCCCC------------------------EEeCCCCcCCCcCChhhhccCcccceEEccCc
Q 042573 87 ILDFAENMLEGSIPSSLGKCQNLI------------------------LLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQN 142 (388)
Q Consensus 87 ~L~l~~n~l~~~~~~~~~~l~~L~------------------------~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n 142 (388)
.|+|..|++....-..|..+++|+ +|+|..|++...-...+++++.| +.|+++.|
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L-~~L~lS~N 303 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL-EQLDLSYN 303 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh-hhhccchh
Confidence 555555544422223333333333 33333333333333333444444 44444444
Q ss_pred cCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccc-
Q 042573 143 QLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIP- 221 (388)
Q Consensus 143 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 221 (388)
.+...-++.+...++|++|+|+.|+|+...+..|..+.+|++|+|++|.+......+|..+++|++|||++|.++..+.
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 4444444444444444455555555444444444445555555555555444444444455555555555555543322
Q ss_pred --hhhhcCCCCcEEEcccccCcccCCCC--CcCCCCccccccCCCC
Q 042573 222 --KYFENFLFLQKLNLSFNHFEGEVPIK--GVFSNSSAISLDGNDN 263 (388)
Q Consensus 222 --~~l~~l~~L~~l~l~~n~~~~~~~~~--~~~~~~~~~~~~~~~~ 263 (388)
..|.++++|++|++.+|++.. ++.. .-+..+..+++.+|+.
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~-I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKS-IPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred chhhhccchhhhheeecCceeee-cchhhhccCcccceecCCCCcc
Confidence 234445555555555555542 2211 2234445555555543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=6.2e-28 Score=215.08 Aligned_cols=259 Identities=24% Similarity=0.230 Sum_probs=187.6
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||....... +|+.|+|.+|.|+..-...++.++.|+.|||+.|.|+.+....|..-.++++|+|++|+|++.-...|..
T Consensus 117 IP~f~~~sg-hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 117 IPRFGHESG-HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred ccccccccc-ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccc
Confidence 455444443 3777888888777776677778888888888888888555567777788999999999998877888888
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEE
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVI 161 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L 161 (388)
+.+|.+|.|+.|.++...+..|+.+++|+.|+|..|.+.-..-..|.+++++ +.|.+..|.+.....+.|-.+.++++|
T Consensus 196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl-~nlklqrN~I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL-QNLKLQRNDISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh-hhhhhhhcCcccccCcceeeeccccee
Confidence 8999999999999987777788889999999999998874445567777777 777777777776666777777777777
Q ss_pred EcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcC--------------
Q 042573 162 SLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENF-------------- 227 (388)
Q Consensus 162 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-------------- 227 (388)
+|..|+++..-..++.++..|+.|+++.|.+..+.++.+..+++|+.|+|++|+|+...+..|..+
T Consensus 275 ~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 275 NLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred ecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 777777776555666677777777777777776677777777777777777777766655555444
Q ss_pred ----------CCCcEEEcccccCcccCCCC----CcCCCCccccccCCC
Q 042573 228 ----------LFLQKLNLSFNHFEGEVPIK----GVFSNSSAISLDGND 262 (388)
Q Consensus 228 ----------~~L~~l~l~~n~~~~~~~~~----~~~~~~~~~~~~~~~ 262 (388)
.+|++||++.|.+...+... .-++.+..+.+.+|.
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence 45555555555555443322 124455666666664
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=6.5e-27 Score=210.48 Aligned_cols=259 Identities=29% Similarity=0.363 Sum_probs=212.3
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||..++.+.. |+.|||++|+++ ..|..+.+.+++-.|+|++|+|..+...-|.++..|-.|+|++|++. .+|+-+..
T Consensus 95 iP~diF~l~d-Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR 171 (1255)
T KOG0444|consen 95 IPTDIFRLKD-LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR 171 (1255)
T ss_pred CCchhccccc-ceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence 7999999987 999999999998 68888999999999999999998555556778999999999999987 66777888
Q ss_pred CCCCCEEeccCCccc-------------------------ccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccce
Q 042573 82 LTSLAILDFAENMLE-------------------------GSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIY 136 (388)
Q Consensus 82 l~~L~~L~l~~n~l~-------------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~ 136 (388)
+..|++|.|++|.+. ..+|.++..+.+|..++++.|++. ..|+.+..++++ +.
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L-rr 249 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL-RR 249 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh-he
Confidence 889999999988653 135667777778888888888887 778888888888 78
Q ss_pred EEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccc-cCCccCcCCCCCCEEECCCCc
Q 042573 137 LNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRG-NIPSSFSSLRGIEKLDLSRNN 215 (388)
Q Consensus 137 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 215 (388)
|++++|.++ .+......+.+|++|+|+.|+++ .+|..+..++.|+.|++.+|+++- -+|..++.+.+|+.+..++|.
T Consensus 250 LNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 250 LNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred eccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 888888887 44445566678888888888887 778888888888888888888763 268888888888888888888
Q ss_pred CccccchhhhcCCCCcEEEcccccCcccCCCCCcCCCCccccccCCCCCcCCC
Q 042573 216 LSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGNDNLCGGI 268 (388)
Q Consensus 216 l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 268 (388)
+. ..|+.+..|+.|+.|.++.|.+-.-......++.+..+++..||.+.-+|
T Consensus 328 LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 328 LE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 87 78888999999999999999887554455667788888999998776443
No 6
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=1.3e-25 Score=191.51 Aligned_cols=240 Identities=25% Similarity=0.315 Sum_probs=168.0
Q ss_pred hccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEccc-CcccccCCcCccCCCCCC
Q 042573 8 NLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKG-NKFWGEIPSSIGNLTSLA 86 (388)
Q Consensus 8 ~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~ 86 (388)
++|....+++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+-|++|.++++|..|.+.+ |+|+......|.++..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 3455577788888888877777888888888888888888877778888887777666655 666644444555555555
Q ss_pred EEeccCCcccccCCc------------------------CCCCCCCCCEEeCCCCcCC------------CcCChhhhcc
Q 042573 87 ILDFAENMLEGSIPS------------------------SLGKCQNLILLDLSKNNLS------------GTIPTEVIGL 130 (388)
Q Consensus 87 ~L~l~~n~l~~~~~~------------------------~~~~l~~L~~L~l~~n~~~------------~~~~~~~~~~ 130 (388)
.|.+.-|.+.....+ +|..+..++.+++..|.+. ...+.++.+.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 555555444433333 4555555555555544411 0011111111
Q ss_pred Cccc---------------------ceE--Ecc-CccCcCCCC-cccccCCCCCEEEcccCcccccCChhhcccccccee
Q 042573 131 PSFS---------------------IYL--NLS-QNQLNGPLP-SNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQL 185 (388)
Q Consensus 131 ~~l~---------------------~~L--~l~-~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 185 (388)
.... +.+ .+. .+......| ..|..+++|+.|+|++|.++.+-+..|.++..+++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 0000 000 011 111222222 358899999999999999999999999999999999
Q ss_pred cccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC
Q 042573 186 VMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK 247 (388)
Q Consensus 186 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~ 247 (388)
+|..|++.......|.++..|+.|+|.+|+|+...|.+|..+..|.++++-.|+|.|.|...
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 99999998777788899999999999999999999999999999999999999999988754
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.3e-24 Score=195.75 Aligned_cols=232 Identities=31% Similarity=0.419 Sum_probs=138.6
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccc-cCCCccccCCCCCCEEEcccCcccccCCcCcc
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFT-GRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIG 80 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 80 (388)
+|++++.+.+ |++|.+.+|++... -.-++.++.|+.+++.+|++. .-+|..+..+..|+.|+|+.|+++ ..|..+.
T Consensus 47 vPeEL~~lqk-LEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE 123 (1255)
T KOG0444|consen 47 VPEELSRLQK-LEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE 123 (1255)
T ss_pred ChHHHHHHhh-hhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh
Confidence 6888888876 88888888887743 234566677777777766653 124444556667777777777665 5666666
Q ss_pred CCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCC-------------
Q 042573 81 NLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGP------------- 147 (388)
Q Consensus 81 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~------------- 147 (388)
.-.++-.|+|++|+|..+....|.++..|-.|+|++|++. .+|..+..+..+ ++|.+++|.+...
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~L-qtL~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSML-QTLKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhh-hhhhcCCChhhHHHHhcCccchhhhh
Confidence 6666667777777766554455666666666677666665 556666666666 5666666655422
Q ss_pred ------------CCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCc
Q 042573 148 ------------LPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNN 215 (388)
Q Consensus 148 ------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 215 (388)
+|..+..+.+|..+|++.|.+. ..|..+..+++|+.|+|++|.++ .+........+|++|++++|+
T Consensus 202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccch
Confidence 3333444444555555555554 44555555555555555555554 222222233445555555555
Q ss_pred CccccchhhhcCCCCcEEEcccccCc
Q 042573 216 LSGRIPKYFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 216 l~~~~~~~l~~l~~L~~l~l~~n~~~ 241 (388)
++ ..|.++..++.|+.|.+.+|+++
T Consensus 280 Lt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 280 LT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred hc-cchHHHhhhHHHHHHHhccCccc
Confidence 55 45556666666666666666544
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.2e-24 Score=186.12 Aligned_cols=248 Identities=29% Similarity=0.458 Sum_probs=206.9
Q ss_pred ChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCC
Q 042573 3 PEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNL 82 (388)
Q Consensus 3 p~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 82 (388)
-..+.+++. |.+|++.+|+++ ..|.++..+..++.++.++|++. .+|..+..+.+|.++++++|.+. ..++.++.+
T Consensus 61 ~~dl~nL~~-l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~ 136 (565)
T KOG0472|consen 61 REDLKNLAC-LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRL 136 (565)
T ss_pred cHhhhcccc-eeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHH
Confidence 345667776 888888888887 56667788888888888888887 77888888888999999999887 677778888
Q ss_pred CCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEE
Q 042573 83 TSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVIS 162 (388)
Q Consensus 83 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 162 (388)
-.|+.++..+|+++ ..|..+.++.+|..+++.+|++. ..|.....|..+ +.++...|-++ .+|..++.+.+|..|+
T Consensus 137 ~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L-~~ld~~~N~L~-tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 137 LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRL-KHLDCNSNLLE-TLPPELGGLESLELLY 212 (565)
T ss_pred hhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHH-Hhcccchhhhh-cCChhhcchhhhHHHH
Confidence 89999999999988 57888888899999999999998 455555558888 89999888887 7788899999999999
Q ss_pred cccCcccccCChhhccccccceecccCccccccCCccC-cCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCc
Q 042573 163 LSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSF-SSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 163 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~ 241 (388)
|..|++. ..| .|.++..|.+++++.|++. .+|.+. .+++++..||+++|+++ ..|..+.-+.+|..||+++|.++
T Consensus 213 L~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 213 LRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred hhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc
Confidence 9999998 666 6899999999999999998 555544 48999999999999999 77888888999999999999999
Q ss_pred ccCCCCCcCCCCccccccCCCC
Q 042573 242 GEVPIKGVFSNSSAISLDGNDN 263 (388)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~ 263 (388)
+-.+..+.+ .+..+.+.|||.
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cCCcccccc-eeeehhhcCCch
Confidence 877766666 667777777763
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=8.7e-24 Score=180.88 Aligned_cols=255 Identities=33% Similarity=0.468 Sum_probs=183.5
Q ss_pred CCChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccc-cCCCCCCEEEcccCcccccCCcCc
Q 042573 1 MLPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSI-GDLQKLQRLWLKGNKFWGEIPSSI 79 (388)
Q Consensus 1 ~ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~ 79 (388)
+||..++.+.+ |..|+|.+|++. ..| .|.++..|.+|.++.|.|. .+|... .++++|..|||+.|++. ..|+.+
T Consensus 197 tlP~~lg~l~~-L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~ 271 (565)
T KOG0472|consen 197 TLPPELGGLES-LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI 271 (565)
T ss_pred cCChhhcchhh-hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH
Confidence 47888888876 888888888887 445 5777888888888888777 555444 37788888888888876 778888
Q ss_pred cCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCC---------------------------------------
Q 042573 80 GNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLS--------------------------------------- 120 (388)
Q Consensus 80 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--------------------------------------- 120 (388)
..+.+|++||+++|.++ .+|..++++ +|+.|.+.+|.+.
T Consensus 272 clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 88888888888888888 467777777 7777777777532
Q ss_pred -------------------------CcCChhhhccCc--ccceEEccCccCc-----------------------CCCCc
Q 042573 121 -------------------------GTIPTEVIGLPS--FSIYLNLSQNQLN-----------------------GPLPS 150 (388)
Q Consensus 121 -------------------------~~~~~~~~~~~~--l~~~L~l~~n~~~-----------------------~~~~~ 150 (388)
..+|.+++.... .....+++.|++. +..|.
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~ 429 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL 429 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH
Confidence 012222221111 1134455555543 13444
Q ss_pred ccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCC
Q 042573 151 NFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFL 230 (388)
Q Consensus 151 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 230 (388)
.+..+++|..|+|++|.+. .+|..++.+..|+.|+++.|++. .+|..+..+..++.+-.++|++....+..+..+.+|
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 5566778888888887776 66777777777888888888776 666666666666777777777876667778888899
Q ss_pred cEEEcccccCcccCCCCCcCCCCccccccCCCCC
Q 042573 231 QKLNLSFNHFEGEVPIKGVFSNSSAISLDGNDNL 264 (388)
Q Consensus 231 ~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (388)
..||+.+|.+....|..+.+.++..+.+.+||..
T Consensus 508 ~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 9999999999877777788888999999888854
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=1.2e-21 Score=167.44 Aligned_cols=231 Identities=23% Similarity=0.262 Sum_probs=197.7
Q ss_pred CCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC-CcccccCCcCCCCCCCCCEEe
Q 042573 35 VNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE-NMLEGSIPSSLGKCQNLILLD 113 (388)
Q Consensus 35 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 113 (388)
+....++|..|.|+.+.+++|..+++|+.|+|+.|.|+.+.|.+|..+.+|.+|-+.+ |+|+......|.++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4678999999999988889999999999999999999999999999999998887776 999987778899999999999
Q ss_pred CCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCccc--------------------c---
Q 042573 114 LSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLS--------------------G--- 170 (388)
Q Consensus 114 l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~--------------------~--- 170 (388)
+.-|++.......+..++.+ ..|.+.+|.+......+|..+.+++.+.+..|.+- |
T Consensus 147 lNan~i~Cir~~al~dL~~l-~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSL-SLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhc-chhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 99999998888889999998 88999999988665567888888888887766510 0
Q ss_pred --------------------------------------cCC-hhhccccccceecccCccccccCCccCcCCCCCCEEEC
Q 042573 171 --------------------------------------EIP-SSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDL 211 (388)
Q Consensus 171 --------------------------------------~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 211 (388)
..| ..|..+++|+.|++++|.++.+-+.+|.....+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 001 12556789999999999999999999999999999999
Q ss_pred CCCcCccccchhhhcCCCCcEEEcccccCcccCCCC-CcCCCCccccccCCCCCcC
Q 042573 212 SRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK-GVFSNSSAISLDGNDNLCG 266 (388)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~~~~~c~ 266 (388)
.+|++.......|.++..|+.|++.+|++++.-|.. .....+..+.+-.||+.|.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 999999888889999999999999999999877643 2344566777888998884
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=1.2e-18 Score=179.51 Aligned_cols=247 Identities=26% Similarity=0.310 Sum_probs=156.3
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
+|.++..+|++|+.|.+.++.+. .+|..| .+.+|+.|++.+|.+. .++..+..+++|+.|+|+++...+.+|. +..
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-ccc
Confidence 56677777777888888777766 455555 4577888888888776 5666677788888888887654445553 677
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEE
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVI 161 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L 161 (388)
+++|++|+|++|.....+|..+.++++|+.|++++|.....+|..+ .++.| +.|++++|......|.. ..+|+.|
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL-~~L~Lsgc~~L~~~p~~---~~nL~~L 730 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL-YRLNLSGCSRLKSFPDI---STNISWL 730 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC-CEEeCCCCCCccccccc---cCCcCee
Confidence 7888888888776655777778888888888888765444566544 56666 77777777554444422 3466777
Q ss_pred EcccCcccccCChhh------------------------------ccccccceecccCccccccCCccCcCCCCCCEEEC
Q 042573 162 SLSENKLSGEIPSSL------------------------------GSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDL 211 (388)
Q Consensus 162 ~L~~n~l~~~~~~~~------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 211 (388)
++++|.+. .+|..+ ...++|+.|++++|.....+|..+.++++|+.|++
T Consensus 731 ~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 731 DLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred ecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 77777665 333221 11245666666666555556666666777777777
Q ss_pred CCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCCCCccccccCC
Q 042573 212 SRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGN 261 (388)
Q Consensus 212 ~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 261 (388)
++|.....+|..+ .+++|+.|++++|.....+|. ...++..+++.+|
T Consensus 810 s~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n 856 (1153)
T PLN03210 810 ENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRT 856 (1153)
T ss_pred CCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCC
Confidence 7664443445443 466677777776654333332 1234444444443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=2e-18 Score=177.84 Aligned_cols=248 Identities=23% Similarity=0.267 Sum_probs=144.3
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
+|..+ .. .+|++|++.+|.+. .++..+..+++|++|+|+++.....+|. +..+++|++|+|++|.....+|..+.+
T Consensus 604 lP~~f-~~-~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 604 MPSNF-RP-ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred CCCcC-Cc-cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhc
Confidence 45554 23 45888888888877 4566677888888888887754445553 677888888888887766677777888
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhh---------------------------------
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVI--------------------------------- 128 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--------------------------------- 128 (388)
+++|+.|++++|.....+|..+ ++++|+.|++++|.....+|....
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMK 758 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccc
Confidence 8888888888765444555544 566666666666543222221100
Q ss_pred -----------------ccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCcc
Q 042573 129 -----------------GLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNF 191 (388)
Q Consensus 129 -----------------~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 191 (388)
..+.+ +.|++++|.....+|..++++++|+.|++++|..-+.+|..+ .+++|+.|++++|.
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL-~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSL-TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred hhhccccccccchhhhhccccc-hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 01122 444555554444455555555555555555553322344333 44555555555543
Q ss_pred ccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEccccc-CcccCCCCCcCCCCccccccC
Q 042573 192 FRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNH-FEGEVPIKGVFSNSSAISLDG 260 (388)
Q Consensus 192 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~~~~~ 260 (388)
....+|.. ..+|+.|+|++|.+. .+|.++..+++|+.|++++|+ +.........+..+..+.+.+
T Consensus 837 ~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 837 RLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred cccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 33233322 245677777777776 456677778888888887754 333222223334444444433
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=2.4e-21 Score=181.83 Aligned_cols=240 Identities=29% Similarity=0.355 Sum_probs=137.5
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
|+.|+.++|.++...+. ..-.+|+++++++|+++ .+|+++..+.+|+.|....|.+. .+|..+....+|+.|.+.+
T Consensus 221 l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred hheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhh
Confidence 56666666666532221 12246667777777666 45566666667777766666663 5555555555555555555
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhh--------------------------hccCcccceEEccCccCcC
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEV--------------------------IGLPSFSIYLNLSQNQLNG 146 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------------------------~~~~~l~~~L~l~~n~~~~ 146 (388)
|.+. -+|.....+..|++|+|..|++. .+|+.+ ..++.+ +.|.+.+|.+++
T Consensus 297 nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~L-q~LylanN~Ltd 373 (1081)
T KOG0618|consen 297 NELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAAL-QELYLANNHLTD 373 (1081)
T ss_pred hhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHH-HHHHHhcCcccc
Confidence 5555 34444555555555555555554 222221 112223 566677777776
Q ss_pred CCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhc
Q 042573 147 PLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFEN 226 (388)
Q Consensus 147 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 226 (388)
.....+-++.+|+.|+|++|++.......+..++.|++|+|++|+++ .+|.++..++.|++|...+|++. ..| .+..
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 66666667777777777777776444455666777777777777776 45565566666666666666665 334 4555
Q ss_pred CCCCcEEEcccccCcccC-CCCCcCCCCccccccCCC
Q 042573 227 FLFLQKLNLSFNHFEGEV-PIKGVFSNSSAISLDGND 262 (388)
Q Consensus 227 l~~L~~l~l~~n~~~~~~-~~~~~~~~~~~~~~~~~~ 262 (388)
++.|+.+|++.|.++... +.....++++.+++++|.
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 556666666666555432 211112455555555554
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.78 E-value=8.2e-21 Score=144.46 Aligned_cols=164 Identities=34% Similarity=0.575 Sum_probs=138.9
Q ss_pred ccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCC
Q 042573 31 LTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLI 110 (388)
Q Consensus 31 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 110 (388)
+-++.+.+.|.|++|+++ ..|..++.+.+|+.|++.+|++. .+|..++.+++|+.|+++.|++. ..|..|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345677888999999998 66777889999999999999887 78888999999999999999888 7889999999999
Q ss_pred EEeCCCCcCC-CcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccC
Q 042573 111 LLDLSKNNLS-GTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNG 189 (388)
Q Consensus 111 ~L~l~~n~~~-~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 189 (388)
.|++.+|++. ..+|..|+.+..+ .-|++++|.+. ..|..++++++|+.|.+.+|.+- .+|..++.+.+|++|++++
T Consensus 106 vldltynnl~e~~lpgnff~m~tl-ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTL-RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHH-HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 9999988876 3577888888888 88999999988 77788899999999999999887 6788888889999999999
Q ss_pred ccccccCCccCc
Q 042573 190 NFFRGNIPSSFS 201 (388)
Q Consensus 190 n~l~~~~~~~~~ 201 (388)
|+++ .+|..++
T Consensus 183 nrl~-vlppel~ 193 (264)
T KOG0617|consen 183 NRLT-VLPPELA 193 (264)
T ss_pred ceee-ecChhhh
Confidence 9887 5554443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2e-18 Score=167.11 Aligned_cols=226 Identities=27% Similarity=0.414 Sum_probs=152.3
Q ss_pred cccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEe
Q 042573 10 STRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILD 89 (388)
Q Consensus 10 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 89 (388)
|++|+.|+|++|+++. +|..+. ++|++|++++|.++ .+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|+
T Consensus 198 p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 198 PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 3458899999998884 454443 58899999999887 4565443 47889999998887 5565553 4789999
Q ss_pred ccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCccc
Q 042573 90 FAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLS 169 (388)
Q Consensus 90 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 169 (388)
+++|++. .+|..+. ++|+.|++++|+++ .+|..+. ..+ +.|++++|.++. +|..+ .++|+.|++++|.++
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL-~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGI-THLNVQSNSLTA-LPETL--PPGLKTLEAGENALT 338 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhH-HHHHhcCCcccc-CCccc--cccceeccccCCccc
Confidence 9998888 4566554 57899999998887 4554332 234 778888888874 34322 257888888888887
Q ss_pred ccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC--
Q 042573 170 GEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK-- 247 (388)
Q Consensus 170 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~-- 247 (388)
+ +|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.++.. |..+. ..|+.|++++|+++. +|..
T Consensus 339 ~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L-P~~l~--~sL~~LdLs~N~L~~-LP~sl~ 408 (754)
T PRK15370 339 S-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL-PENLP--AALQIMQASRNNLVR-LPESLP 408 (754)
T ss_pred c-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC-CHhHH--HHHHHHhhccCCccc-CchhHH
Confidence 4 454442 57888888888877 4555443 6788888888888743 43333 257777788887763 2211
Q ss_pred ---CcCCCCccccccCCCCC
Q 042573 248 ---GVFSNSSAISLDGNDNL 264 (388)
Q Consensus 248 ---~~~~~~~~~~~~~~~~~ 264 (388)
...+.+..+.+.+|+..
T Consensus 409 ~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 409 HFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHhhcCCCccEEEeeCCCcc
Confidence 12234455666666643
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=2.2e-20 Score=175.49 Aligned_cols=225 Identities=28% Similarity=0.309 Sum_probs=173.7
Q ss_pred ccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEE
Q 042573 9 LSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAIL 88 (388)
Q Consensus 9 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 88 (388)
.|.+|+++++++|++++ +|..+..+.+|+.+.+.+|.+. .+|..+....+|+.|.+.+|.+. -+|+....+..|++|
T Consensus 239 ~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 34567888888888774 4577777788888888888775 56666666677777777777765 455556667777777
Q ss_pred eccCCcccccCCc-----------------------C--CCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCcc
Q 042573 89 DFAENMLEGSIPS-----------------------S--LGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQ 143 (388)
Q Consensus 89 ~l~~n~l~~~~~~-----------------------~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~ 143 (388)
+|..|++....+. . =..++.|+.|++.+|.+++..-..+.++..| +.|+++.|+
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL-KVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL-KVLHLSYNR 394 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce-eeeeecccc
Confidence 7777766522110 1 1234567888888898887777778888888 999999999
Q ss_pred CcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchh
Q 042573 144 LNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKY 223 (388)
Q Consensus 144 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 223 (388)
+.......+.+++.|++|+|++|+++ .+|..+..++.|++|...+|++. .+| .+..++.|+.+|++.|+++...-..
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh
Confidence 99666667899999999999999998 77788999999999999999998 677 7888999999999999998654333
Q ss_pred hhcCCCCcEEEcccccC
Q 042573 224 FENFLFLQKLNLSFNHF 240 (388)
Q Consensus 224 l~~l~~L~~l~l~~n~~ 240 (388)
....++|++||+++|..
T Consensus 472 ~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 472 ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hCCCcccceeeccCCcc
Confidence 33448999999999985
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1.9e-20 Score=142.55 Aligned_cols=165 Identities=31% Similarity=0.512 Sum_probs=148.5
Q ss_pred hhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCC
Q 042573 5 AVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTS 84 (388)
Q Consensus 5 ~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 84 (388)
+++++.. ++.|.|++|+++ .+|..++.+.+|+.|++.+|++. .+|..++.+++|+.|++.-|++. .+|..|+.++.
T Consensus 28 gLf~~s~-ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSN-ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred cccchhh-hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 4566665 899999999999 56667999999999999999998 78889999999999999999887 89999999999
Q ss_pred CCEEeccCCccc-ccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEc
Q 042573 85 LAILDFAENMLE-GSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISL 163 (388)
Q Consensus 85 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 163 (388)
|+.|||.+|++. ..+|..|-.|..|+.|+++.|.+. .+|..++.++.+ +.|.+.+|.+. ..|..++.+..|++|.+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l-qil~lrdndll-~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL-QILSLRDNDLL-SLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce-eEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence 999999999986 357899999999999999999998 889999999999 89999999998 78889999999999999
Q ss_pred ccCcccccCChhhc
Q 042573 164 SENKLSGEIPSSLG 177 (388)
Q Consensus 164 ~~n~l~~~~~~~~~ 177 (388)
.+|+++ .+|..++
T Consensus 181 qgnrl~-vlppel~ 193 (264)
T KOG0617|consen 181 QGNRLT-VLPPELA 193 (264)
T ss_pred ccceee-ecChhhh
Confidence 999998 5555443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=1.3e-17 Score=160.72 Aligned_cols=213 Identities=25% Similarity=0.362 Sum_probs=111.3
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCc--
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSI-- 79 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-- 79 (388)
||..+. .+|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. .++|+.|++++|.+.. +|..+
T Consensus 216 LP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~~-Lp~lp~~ 283 (788)
T PRK15387 216 LPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLTH-LPALPSG 283 (788)
T ss_pred CCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchhh-hhhchhh
Confidence 565554 247777777777774 333 2467777777777776 33432 2344455554444431 11110
Q ss_pred ---------------cCCCCCCEEeccCCcccccCCcCCCC----------------C-CCCCEEeCCCCcCCCcCChhh
Q 042573 80 ---------------GNLTSLAILDFAENMLEGSIPSSLGK----------------C-QNLILLDLSKNNLSGTIPTEV 127 (388)
Q Consensus 80 ---------------~~l~~L~~L~l~~n~l~~~~~~~~~~----------------l-~~L~~L~l~~n~~~~~~~~~~ 127 (388)
..+++|+.|++++|.+.. +|..... + .+|+.|++++|+++ .+|..
T Consensus 284 L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l- 360 (788)
T PRK15387 284 LCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL- 360 (788)
T ss_pred cCEEECcCCccccccccccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC-
Confidence 012456666666666553 2221110 0 13334444444433 12211
Q ss_pred hccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCC
Q 042573 128 IGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIE 207 (388)
Q Consensus 128 ~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 207 (388)
...+ ..|++++|.++. +|. .+.+|+.|++++|.+++ +|.. .++|+.|++++|.++. +|.. +.+|+
T Consensus 361 --p~~L-~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~ 425 (788)
T PRK15387 361 --PSEL-YKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLL 425 (788)
T ss_pred --Cccc-ceehhhcccccc-Ccc---cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhh
Confidence 1112 333444444432 221 12356666666666653 3322 2456677777777663 4432 24567
Q ss_pred EEECCCCcCccccchhhhcCCCCcEEEcccccCcccCC
Q 042573 208 KLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 208 ~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~ 245 (388)
.|++++|+++ .+|..+..+++|+.+++++|++++..+
T Consensus 426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 7777777777 567777778888888888888886543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=1.8e-19 Score=161.75 Aligned_cols=237 Identities=24% Similarity=0.224 Sum_probs=174.7
Q ss_pred hhhhccccccEEEeecCceeec----CcccccCCCCCCEEECcCCcccc------CCCccccCCCCCCEEEcccCccccc
Q 042573 5 AVGNLSTRLGKLSVAENQLFGN----IPSGLTNLVNLELLDLGDNQFTG------RIPGSIGDLQKLQRLWLKGNKFWGE 74 (388)
Q Consensus 5 ~~~~l~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~~L~~L~L~~n~~~~~ 74 (388)
-+..+.. |++|+++++.++.. ++..+...++|++++++++.+.. .++..+..+++|++|++++|.+.+.
T Consensus 18 ~~~~l~~-L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 18 LLPKLLC-LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHhh-ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3455665 99999999998643 45556788889999999988762 2234567788999999999998765
Q ss_pred CCcCccCCCC---CCEEeccCCcccc----cCCcCCCCC-CCCCEEeCCCCcCCCc----CChhhhccCcccceEEccCc
Q 042573 75 IPSSIGNLTS---LAILDFAENMLEG----SIPSSLGKC-QNLILLDLSKNNLSGT----IPTEVIGLPSFSIYLNLSQN 142 (388)
Q Consensus 75 ~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~~~~l~~~L~l~~n 142 (388)
.+..+..+.+ |++|++++|.+.. .+...+..+ ++|+.|++++|.+++. ....+..+..+ +.|++++|
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L-~~L~l~~n 175 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL-KELNLANN 175 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc-CEEECcCC
Confidence 5555555554 9999999998873 223345566 8999999999998743 23345566677 89999999
Q ss_pred cCcCC----CCcccccCCCCCEEEcccCcccccC----ChhhccccccceecccCccccccCCccCc-----CCCCCCEE
Q 042573 143 QLNGP----LPSNFGILKNLGVISLSENKLSGEI----PSSLGSCIRLEQLVMNGNFFRGNIPSSFS-----SLRGIEKL 209 (388)
Q Consensus 143 ~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L 209 (388)
.+++. .+..+...++|+.|++++|.+++.. ...+..+++|+.|++++|.+++.....+. ..+.|++|
T Consensus 176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence 98853 2233455679999999999986432 33456778999999999988753222221 24789999
Q ss_pred ECCCCcCccc----cchhhhcCCCCcEEEcccccCccc
Q 042573 210 DLSRNNLSGR----IPKYFENFLFLQKLNLSFNHFEGE 243 (388)
Q Consensus 210 ~l~~n~l~~~----~~~~l~~l~~L~~l~l~~n~~~~~ 243 (388)
++++|.+++. ....+..+++|+.+++++|.+...
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 9999999732 334556678999999999999854
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1e-17 Score=162.26 Aligned_cols=212 Identities=26% Similarity=0.444 Sum_probs=163.6
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||..++ .+|++|++++|.++. +|..+. .+|+.|+|++|.+. .+|..+. .+|+.|++++|.+. .+|..+.
T Consensus 214 LP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~- 282 (754)
T PRK15370 214 LPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP- 282 (754)
T ss_pred CChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC-
Confidence 455443 359999999999984 565553 47999999999998 6676653 58999999999998 5666553
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEE
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVI 161 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L 161 (388)
++|+.|++++|+++. +|..+. ++|+.|++++|.++ .+|..+. +.+ +.|++++|.++. +|..+. ++|+.|
T Consensus 283 -~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL-~~L~Ls~N~Lt~-LP~~l~--~sL~~L 351 (754)
T PRK15370 283 -EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP--PGL-KTLEAGENALTS-LPASLP--PELQVL 351 (754)
T ss_pred -CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc--ccc-eeccccCCcccc-CChhhc--CcccEE
Confidence 589999999999984 555443 47899999999998 4554332 456 899999999985 555443 689999
Q ss_pred EcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhh----hcCCCCcEEEccc
Q 042573 162 SLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYF----ENFLFLQKLNLSF 237 (388)
Q Consensus 162 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~l~l~~ 237 (388)
++++|.++ .+|..+ .++|+.|++++|.++ .+|..+. ..|+.|++++|+++ ..|..+ ..++.+..+++.+
T Consensus 352 ~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 352 DVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred ECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeC
Confidence 99999998 566554 368999999999998 4565544 47999999999998 444433 4457889999999
Q ss_pred ccCcc
Q 042573 238 NHFEG 242 (388)
Q Consensus 238 n~~~~ 242 (388)
|+++.
T Consensus 425 Npls~ 429 (754)
T PRK15370 425 NPFSE 429 (754)
T ss_pred CCccH
Confidence 99863
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=4.2e-19 Score=159.39 Aligned_cols=247 Identities=23% Similarity=0.293 Sum_probs=168.6
Q ss_pred EEEeecCceee-cCcccccCCCCCCEEECcCCccccC----CCccccCCCCCCEEEcccCcccc------cCCcCccCCC
Q 042573 15 KLSVAENQLFG-NIPSGLTNLVNLELLDLGDNQFTGR----IPGSIGDLQKLQRLWLKGNKFWG------EIPSSIGNLT 83 (388)
Q Consensus 15 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~------~~~~~~~~l~ 83 (388)
.|+|..+.+++ .....|..+.+|++|+++++.++.. ++..+...++|++|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46777777763 3445567778899999999987422 44456677789999998887652 2334567788
Q ss_pred CCCEEeccCCcccccCCcCCCCCC---CCCEEeCCCCcCCCc----CChhhhcc-CcccceEEccCccCcCC----CCcc
Q 042573 84 SLAILDFAENMLEGSIPSSLGKCQ---NLILLDLSKNNLSGT----IPTEVIGL-PSFSIYLNLSQNQLNGP----LPSN 151 (388)
Q Consensus 84 ~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l~~n~~~~~----~~~~~~~~-~~l~~~L~l~~n~~~~~----~~~~ 151 (388)
+|+.|++++|.+....+..+..+. +|+.|++++|++.+. +...+..+ +.+ +.|++++|.+++. ....
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL-EKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCc-eEEEcCCCcCCchHHHHHHHH
Confidence 999999999988754444444444 499999999887631 22334455 666 8999999988743 3344
Q ss_pred cccCCCCCEEEcccCccccc----CChhhccccccceecccCcccccc----CCccCcCCCCCCEEECCCCcCccccchh
Q 042573 152 FGILKNLGVISLSENKLSGE----IPSSLGSCIRLEQLVMNGNFFRGN----IPSSFSSLRGIEKLDLSRNNLSGRIPKY 223 (388)
Q Consensus 152 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 223 (388)
+..+.+|++|++++|.+++. ++..+..+++|+.|++++|.+.+. +...+..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 56677899999999988742 223344556899999999987643 3345567788999999999888643333
Q ss_pred hh-c----CCCCcEEEcccccCcc--cC---CCCCcCCCCccccccCCC
Q 042573 224 FE-N----FLFLQKLNLSFNHFEG--EV---PIKGVFSNSSAISLDGND 262 (388)
Q Consensus 224 l~-~----l~~L~~l~l~~n~~~~--~~---~~~~~~~~~~~~~~~~~~ 262 (388)
+. . .+.|+++++++|.++. .. .....++.+..++++.|.
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 32 2 3689999999998862 11 111233566777776665
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=1.1e-15 Score=147.59 Aligned_cols=221 Identities=26% Similarity=0.350 Sum_probs=121.2
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|.++. +|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 678999999998 5676665 58999999999998 4664 35889999999999984 4532 34566666666
Q ss_pred CcccccCCcCCC-----------------CCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccC
Q 042573 93 NMLEGSIPSSLG-----------------KCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGIL 155 (388)
Q Consensus 93 n~l~~~~~~~~~-----------------~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l 155 (388)
|.+.. +|..+. ..++|+.|++++|++.. +|... ..+ ..|++++|.+++ +|. ..
T Consensus 272 N~L~~-Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~lp---~~L-~~L~Ls~N~L~~-LP~---lp 341 (788)
T PRK15387 272 NPLTH-LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALP---SEL-CKLWAYNNQLTS-LPT---LP 341 (788)
T ss_pred Cchhh-hhhchhhcCEEECcCCccccccccccccceeECCCCcccc-CCCCc---ccc-cccccccCcccc-ccc---cc
Confidence 65542 222110 12456666666666653 22211 112 334444444432 221 11
Q ss_pred CCCCEEEcccCcccccCChhhc-----------------cccccceecccCccccccCCccCcCCCCCCEEECCCCcCcc
Q 042573 156 KNLGVISLSENKLSGEIPSSLG-----------------SCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSG 218 (388)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~~~~~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 218 (388)
.+|+.|+|++|.+++ +|.... ...+|+.|++++|.++. +|.. .++|+.|++++|+++.
T Consensus 342 ~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 342 SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS 416 (788)
T ss_pred cccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC
Confidence 356666666666653 222110 01234444444444442 2221 1345555555555553
Q ss_pred ccchhhhcCCCCcEEEcccccCcccCCC-CCcCCCCccccccCCCCC
Q 042573 219 RIPKYFENFLFLQKLNLSFNHFEGEVPI-KGVFSNSSAISLDGNDNL 264 (388)
Q Consensus 219 ~~~~~l~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (388)
+|..+ .+|+.|++++|.++ .+|. ...+..+..+++.+|+..
T Consensus 417 -IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 417 -LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred -CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 23221 24555666666665 2332 234556677788888743
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=6.5e-14 Score=135.25 Aligned_cols=117 Identities=33% Similarity=0.588 Sum_probs=101.8
Q ss_pred CCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEccc
Q 042573 158 LGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSF 237 (388)
Q Consensus 158 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~ 237 (388)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCC--CcCCCCccccccCCCCCcCCCCCCCCCCCC
Q 042573 238 NHFEGEVPIK--GVFSNSSAISLDGNDNLCGGISDLHLSTCS 277 (388)
Q Consensus 238 n~~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~~~~~~~~c~ 277 (388)
|.++|.+|.. ........+.+.+|+..|+.+. ...|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~---l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG---LRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCC---CCCCc
Confidence 9999998853 1223445678889999998543 34565
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.41 E-value=9.2e-15 Score=131.31 Aligned_cols=194 Identities=31% Similarity=0.473 Sum_probs=141.5
Q ss_pred EEECcCCccccCCCcc-c-cCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCC
Q 042573 39 LLDLGDNQFTGRIPGS-I-GDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSK 116 (388)
Q Consensus 39 ~L~l~~n~~~~~~~~~-~-~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 116 (388)
.|.|++-++. .+|.. + ..+..-...+|+.|++. .+|..+..+..|+.+.|++|.+. .+|..+.++..|++++|+.
T Consensus 54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence 3445555554 33321 1 23444556778888776 67777777778888888888777 5677788888888888888
Q ss_pred CcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccC
Q 042573 117 NNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNI 196 (388)
Q Consensus 117 n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 196 (388)
|+++ ..|..++.++- +.|-+++|+++ ..|..++....|..||.+.|.+. .+|..+.++.+|+.|++..|++. .+
T Consensus 131 NqlS-~lp~~lC~lpL--kvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~l 204 (722)
T KOG0532|consen 131 NQLS-HLPDGLCDLPL--KVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DL 204 (722)
T ss_pred chhh-cCChhhhcCcc--eeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hC
Confidence 8887 67777777763 56777888887 66667777778888888888887 66777888888888888888887 55
Q ss_pred CccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCccc
Q 042573 197 PSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGE 243 (388)
Q Consensus 197 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~ 243 (388)
|..+..+ .|..||++.|+++ .+|-.|..|..|+.|-|.+|+++..
T Consensus 205 p~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 205 PEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred CHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 6666543 4788888888887 6677788888888888888888743
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.39 E-value=2e-12 Score=125.01 Aligned_cols=111 Identities=36% Similarity=0.521 Sum_probs=103.0
Q ss_pred ceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCC
Q 042573 135 IYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN 214 (388)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 214 (388)
+.|++++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+|++|
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccchhhhcC-CCCcEEEcccccCcccCC
Q 042573 215 NLSGRIPKYFENF-LFLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 215 ~l~~~~~~~l~~l-~~L~~l~l~~n~~~~~~~ 245 (388)
.+++.+|..+... .++..+++.+|+..|.+|
T Consensus 501 ~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 501 SLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999888764 467889999999877655
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.4e-14 Score=122.59 Aligned_cols=210 Identities=23% Similarity=0.214 Sum_probs=150.2
Q ss_pred cCCCCCCEEECcCCccccCCC--ccccCCCCCCEEEcccCccccc--CCcCccCCCCCCEEeccCCcccccCCc-CCCCC
Q 042573 32 TNLVNLELLDLGDNQFTGRIP--GSIGDLQKLQRLWLKGNKFWGE--IPSSIGNLTSLAILDFAENMLEGSIPS-SLGKC 106 (388)
Q Consensus 32 ~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l 106 (388)
+++..|+.+.|.++.+. ..+ .....|++++.|+|+.|-+... +.....++++|+.|+++.|.+...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46778999999998876 333 3456789999999999876532 223456899999999999987632211 12356
Q ss_pred CCCCEEeCCCCcCCCc-CChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccC-Chhhccccccce
Q 042573 107 QNLILLDLSKNNLSGT-IPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEI-PSSLGSCIRLEQ 184 (388)
Q Consensus 107 ~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 184 (388)
++|+.|.++.|+++.. +......+|.+ +.|++..|............+..|+.|+|++|.+-... -.....++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl-~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSL-EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcH-HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 8899999999988722 22334577888 88999998533344444556778999999999885322 134567899999
Q ss_pred ecccCcccccc-CCcc-----CcCCCCCCEEECCCCcCcccc-chhhhcCCCCcEEEcccccCccc
Q 042573 185 LVMNGNFFRGN-IPSS-----FSSLRGIEKLDLSRNNLSGRI-PKYFENFLFLQKLNLSFNHFEGE 243 (388)
Q Consensus 185 L~l~~n~l~~~-~~~~-----~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~l~l~~n~~~~~ 243 (388)
|+++.+++++. .|+. ...+++|++|++..|++.... -..+..+++|+.+.+..|+++..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 99999998765 3333 356799999999999996432 24566778888888888888754
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=5.8e-14 Score=126.27 Aligned_cols=178 Identities=33% Similarity=0.532 Sum_probs=136.4
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
+|..+..+-. |+.+.|++|.+. .+|.++.++..|.+|+|+.|+++ .+|..+..|+ |+.|.+++|+++ .+|+.++.
T Consensus 90 lp~~~~~f~~-Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~ 164 (722)
T KOG0532|consen 90 LPEEACAFVS-LESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGL 164 (722)
T ss_pred CchHHHHHHH-HHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccccc
Confidence 5666666664 888888888887 56777888888888888888887 6777777766 888888888886 77777888
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEE
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVI 161 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L 161 (388)
+..|..|+.+.|.+. .+|..+..+.+|+.|.+..|++. .+|.++..++ | ..||++.|++. .+|..|.+|..|++|
T Consensus 165 ~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-L-i~lDfScNkis-~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-L-IRLDFSCNKIS-YLPVDFRKMRHLQVL 239 (722)
T ss_pred chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-e-eeeecccCcee-ecchhhhhhhhheee
Confidence 888888888888887 56777888888888888888887 6777777444 4 68888888888 677888888888888
Q ss_pred EcccCcccccCChhhcccc---ccceecccCc
Q 042573 162 SLSENKLSGEIPSSLGSCI---RLEQLVMNGN 190 (388)
Q Consensus 162 ~L~~n~l~~~~~~~~~~l~---~L~~L~l~~n 190 (388)
.|.+|.++ ..|..+...- =.++|+..-+
T Consensus 240 ~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 240 QLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 88888887 5555554322 2445666555
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=2.6e-12 Score=118.72 Aligned_cols=198 Identities=34% Similarity=0.488 Sum_probs=148.0
Q ss_pred EEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCC-CCCEEeccCCcccccCCcCCCCCCCCCEEeCCCC
Q 042573 39 LLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLT-SLAILDFAENMLEGSIPSSLGKCQNLILLDLSKN 117 (388)
Q Consensus 39 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 117 (388)
.+++..+.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 5777777764 23334455677888999988887 5555566664 8999999999888 45567788899999999999
Q ss_pred cCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCC
Q 042573 118 NLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIP 197 (388)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 197 (388)
++. .++......+.+ ..|++++|.+. .+|.....+..|++|.+++|.+. ..+..+..+..+..+.+.+|++. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L-~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNL-NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhh-hheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 887 566555567777 78899999888 44544445566899999998543 44555777888888888888886 336
Q ss_pred ccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCC
Q 042573 198 SSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPI 246 (388)
Q Consensus 198 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~ 246 (388)
..+..++.++.|++++|.++.... +..+.+++.+++++|.+....+.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 677788889999999999985544 77888899999999888765543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=3.6e-12 Score=117.74 Aligned_cols=201 Identities=39% Similarity=0.506 Sum_probs=157.0
Q ss_pred EEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCC-CCCEEEcccCcccccCCcCccCCCCCCEEeccCC
Q 042573 15 KLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQ-KLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAEN 93 (388)
Q Consensus 15 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 93 (388)
.+++..+.+.... ..+..++.++.|++.+|.+. .++.....+. +|+.|+++.|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4677777764332 23456688999999999998 5666666664 9999999999987 55567889999999999999
Q ss_pred cccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCC
Q 042573 94 MLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIP 173 (388)
Q Consensus 94 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 173 (388)
++. .++......++|+.|++++|++. .+|........+ +++.+++|... ..+..+.++.++..+.+..|++. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L-~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL-EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhh-hhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 998 45555557899999999999998 666654444446 88999999644 34456788888999999999887 446
Q ss_pred hhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhh
Q 042573 174 SSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFE 225 (388)
Q Consensus 174 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 225 (388)
..+..+++++.|++++|.++.... +..+..++.|++++|.+....+....
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhc
Confidence 677888899999999999985544 78889999999999999876665443
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=6.8e-13 Score=112.73 Aligned_cols=228 Identities=22% Similarity=0.251 Sum_probs=136.8
Q ss_pred ccEEEeecCceeec----CcccccCCCCCCEEECcCCc---cccCCCc-------cccCCCCCCEEEcccCcccccCCcC
Q 042573 13 LGKLSVAENQLFGN----IPSGLTNLVNLELLDLGDNQ---FTGRIPG-------SIGDLQKLQRLWLKGNKFWGEIPSS 78 (388)
Q Consensus 13 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~---~~~~~~~-------~~~~l~~L~~L~L~~n~~~~~~~~~ 78 (388)
+++|+|++|.+... +...+.+-++|+..++++-- ....+|. .+.++++|++|+|+.|-+....+..
T Consensus 32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~ 111 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG 111 (382)
T ss_pred eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence 77888888877542 33445666777777777531 1112222 3456678888888888665333332
Q ss_pred ----ccCCCCCCEEeccCCccccc-------------CCcCCCCCCCCCEEeCCCCcCCCcCC----hhhhccCcccceE
Q 042573 79 ----IGNLTSLAILDFAENMLEGS-------------IPSSLGKCQNLILLDLSKNNLSGTIP----TEVIGLPSFSIYL 137 (388)
Q Consensus 79 ----~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~l~~~L 137 (388)
+..+..|++|.|.+|.+.-. ......+-+.|+++...+|++..... ..+...+.+ +.+
T Consensus 112 l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l-eev 190 (382)
T KOG1909|consen 112 LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL-EEV 190 (382)
T ss_pred HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc-ceE
Confidence 34567788888877766511 12233445677888877777653211 234445555 777
Q ss_pred EccCccCcCC----CCcccccCCCCCEEEcccCcccc----cCChhhccccccceecccCccccccCCccC-----cCCC
Q 042573 138 NLSQNQLNGP----LPSNFGILKNLGVISLSENKLSG----EIPSSLGSCIRLEQLVMNGNFFRGNIPSSF-----SSLR 204 (388)
Q Consensus 138 ~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~ 204 (388)
.+..|.+... ....|..+++|+.|||.+|.++. .+...+..+++|++|++++|.+......++ ...|
T Consensus 191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p 270 (382)
T KOG1909|consen 191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP 270 (382)
T ss_pred EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence 7777766422 23446677778888888877752 223445566777777777777654422222 1357
Q ss_pred CCCEEECCCCcCccc----cchhhhcCCCCcEEEcccccCc
Q 042573 205 GIEKLDLSRNNLSGR----IPKYFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 205 ~L~~L~l~~n~l~~~----~~~~l~~l~~L~~l~l~~n~~~ 241 (388)
+|+.|.+.+|.|+.. +...+...+.|..|++++|.+.
T Consensus 271 ~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 271 SLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred CCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 777777777777643 2223344567777777777773
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.3e-12 Score=114.05 Aligned_cols=210 Identities=24% Similarity=0.205 Sum_probs=151.1
Q ss_pred hccccccEEEeecCceeecCc-ccccCCCCCCEEECcCCccccCCC--ccccCCCCCCEEEcccCcccccCCc-CccCCC
Q 042573 8 NLSTRLGKLSVAENQLFGNIP-SGLTNLVNLELLDLGDNQFTGRIP--GSIGDLQKLQRLWLKGNKFWGEIPS-SIGNLT 83 (388)
Q Consensus 8 ~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~ 83 (388)
++.+ |+++.|.++.+..... .....|++++.|||++|-+....+ .....+++|+.|+|+.|.+.....+ .-..++
T Consensus 119 n~kk-L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKK-LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHh-hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4554 9999999998874432 467889999999999997763322 3456789999999999987632222 223678
Q ss_pred CCCEEeccCCccccc-CCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCC-CcccccCCCCCEE
Q 042573 84 SLAILDFAENMLEGS-IPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPL-PSNFGILKNLGVI 161 (388)
Q Consensus 84 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~-~~~~~~l~~L~~L 161 (388)
+|+.|.|+.|.++.. +......+|+|..|++..|............+..+ +.|+|++|++.... ....+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L-~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL-QELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH-hhccccCCcccccccccccccccchhhh
Confidence 999999999998743 22334678999999999985322333333445556 89999999887432 3456788999999
Q ss_pred EcccCcccccC-Chh-----hccccccceecccCcccccc-CCccCcCCCCCCEEECCCCcCccc
Q 042573 162 SLSENKLSGEI-PSS-----LGSCIRLEQLVMNGNFFRGN-IPSSFSSLRGIEKLDLSRNNLSGR 219 (388)
Q Consensus 162 ~L~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 219 (388)
+++.+.+...- |+. ...+++|+.|++..|.+.+. ....+..+++|+.|.+..|.++..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 99999887432 221 35678999999999998643 334556678899999888888643
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=4.3e-12 Score=105.86 Aligned_cols=134 Identities=29% Similarity=0.274 Sum_probs=89.4
Q ss_pred CCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccc
Q 042573 104 GKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLE 183 (388)
Q Consensus 104 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 183 (388)
.....|+.++|+.|.++ .+.+.+.-.|.+ +.|+++.|.+.... .++.+++|+.|||++|.++ .+..+-..+.+.+
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pki-r~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKL-RRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccce-eEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 33456777788777776 555666666666 77788877776442 3677778888888888776 3333333556777
Q ss_pred eecccCccccccCCccCcCCCCCCEEECCCCcCcccc-chhhhcCCCCcEEEcccccCcccC
Q 042573 184 QLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRI-PKYFENFLFLQKLNLSFNHFEGEV 244 (388)
Q Consensus 184 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~l~l~~n~~~~~~ 244 (388)
.|.+++|.+.+. ..+..+-+|..||+++|+|.... -..++.+|.|+.+.+.+|++.+..
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 788888776532 34455677788888888876442 245667777888888888877543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=3.3e-11 Score=95.92 Aligned_cols=84 Identities=21% Similarity=0.195 Sum_probs=30.3
Q ss_pred cccCCCCCEEEcccCcccccCChhh-ccccccceecccCcccccc-CCccCcCCCCCCEEECCCCcCcccc---chhhhc
Q 042573 152 FGILKNLGVISLSENKLSGEIPSSL-GSCIRLEQLVMNGNFFRGN-IPSSFSSLRGIEKLDLSRNNLSGRI---PKYFEN 226 (388)
Q Consensus 152 ~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~ 226 (388)
+..++.|+.|++++|.|+.. ...+ ..+++|+.|++++|++... .-..+..+++|+.|++.+|.++... ...+..
T Consensus 60 l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~ 138 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK 138 (175)
T ss_dssp ----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH
T ss_pred ccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHH
Confidence 33455566666666666532 2222 2455666666666665432 1234455667777777777666432 224556
Q ss_pred CCCCcEEEcc
Q 042573 227 FLFLQKLNLS 236 (388)
Q Consensus 227 l~~L~~l~l~ 236 (388)
+|+|+.||-.
T Consensus 139 lP~Lk~LD~~ 148 (175)
T PF14580_consen 139 LPSLKVLDGQ 148 (175)
T ss_dssp -TT-SEETTE
T ss_pred cChhheeCCE
Confidence 7777776543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=1.3e-11 Score=103.09 Aligned_cols=204 Identities=24% Similarity=0.262 Sum_probs=145.4
Q ss_pred ccccccEEEeecCc-------e-eecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccc---cCCc
Q 042573 9 LSTRLGKLSVAENQ-------L-FGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWG---EIPS 77 (388)
Q Consensus 9 l~~~L~~L~l~~~~-------~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~---~~~~ 77 (388)
+...|.+|-.+... | ...+|-.+.-+++|+.+.++++.-. .+.+....-|.|+++..++..+.. .+|.
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe 258 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPE 258 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccch
Confidence 33447777765432 1 1123334456678888888887654 233323344677787777654331 1111
Q ss_pred --------------------CccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceE
Q 042573 78 --------------------SIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYL 137 (388)
Q Consensus 78 --------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L 137 (388)
.+..-..|++|||++|.++ .+..++.-.|.++.|+++.|.+.. + ..+..++++ +.|
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L-~~L 334 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQL-QLL 334 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccc-eEe
Confidence 0112246889999999998 677888888999999999999973 3 337888888 899
Q ss_pred EccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCcccccc-CCccCcCCCCCCEEECCCCcC
Q 042573 138 NLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGN-IPSSFSSLRGIEKLDLSRNNL 216 (388)
Q Consensus 138 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l 216 (388)
++++|.++ ...++-.++-+.+.|.|++|.+... ..+..+.+|..|++.+|++... -...++++|.|+.+.|.+|.+
T Consensus 335 DLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 335 DLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 99999998 4445556788999999999998632 3466788999999999999754 346788999999999999999
Q ss_pred cccc
Q 042573 217 SGRI 220 (388)
Q Consensus 217 ~~~~ 220 (388)
.+..
T Consensus 412 ~~~v 415 (490)
T KOG1259|consen 412 AGSV 415 (490)
T ss_pred cccc
Confidence 8554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=4.1e-11 Score=95.40 Aligned_cols=83 Identities=34% Similarity=0.413 Sum_probs=15.3
Q ss_pred CCCCCCEEECcCCccccCCCcccc-CCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCC-CCCCCCC
Q 042573 33 NLVNLELLDLGDNQFTGRIPGSIG-DLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSL-GKCQNLI 110 (388)
Q Consensus 33 ~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~ 110 (388)
+...+++|+|++|.|+ .+. .++ .+.+|+.|+|++|.++.. +.+..+++|++|++++|.++.. ...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 3334555555555554 222 232 344555555555555422 1344455555555555555422 1112 2344555
Q ss_pred EEeCCCCcCC
Q 042573 111 LLDLSKNNLS 120 (388)
Q Consensus 111 ~L~l~~n~~~ 120 (388)
.|++++|++.
T Consensus 92 ~L~L~~N~I~ 101 (175)
T PF14580_consen 92 ELYLSNNKIS 101 (175)
T ss_dssp EEE-TTS---
T ss_pred EEECcCCcCC
Confidence 5555555443
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.06 E-value=1.4e-10 Score=76.03 Aligned_cols=58 Identities=36% Similarity=0.512 Sum_probs=38.8
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCc
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNK 70 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 70 (388)
|++|++++|+++...+..|.++++|++|++++|.+....++.|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 6667777776666655666666666666666666665556666666666666666664
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=2.4e-10 Score=74.94 Aligned_cols=60 Identities=37% Similarity=0.492 Sum_probs=35.5
Q ss_pred CCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCc
Q 042573 35 VNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENM 94 (388)
Q Consensus 35 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 94 (388)
++|++|++++|++..+.+..|.++++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345666666666654445556666666666666666655555556666666666666554
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=1.7e-10 Score=114.39 Aligned_cols=226 Identities=26% Similarity=0.269 Sum_probs=103.3
Q ss_pred ccEEEeecCc--eeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEec
Q 042573 13 LGKLSVAENQ--LFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDF 90 (388)
Q Consensus 13 L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 90 (388)
|++|-+.+|. +.......|..++.|++|||++|.--+.+|..++++-+|++|+++++.+. .+|..+.++..|.+|++
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNL 625 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecc
Confidence 5555555553 33333333555555555555554433355555555555555555555554 55555555555555555
Q ss_pred cCCcccccCCcCCCCCCCCCEEeCCCCcCC--CcCChhhhccCcc-------------------------cceEEccCcc
Q 042573 91 AENMLEGSIPSSLGKCQNLILLDLSKNNLS--GTIPTEVIGLPSF-------------------------SIYLNLSQNQ 143 (388)
Q Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~l-------------------------~~~L~l~~n~ 143 (388)
..+.-...+|.....+.+|++|.+...... ...-..+..+..| .+.+.+.++.
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~ 705 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCS 705 (889)
T ss_pred ccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccc
Confidence 554433333444444555555555332211 0111111111111 1122221211
Q ss_pred CcCCCCcccccCCCCCEEEcccCcccccCChhhc-----c-ccccceecccCccccccCCccCcCCCCCCEEECCCCcCc
Q 042573 144 LNGPLPSNFGILKNLGVISLSENKLSGEIPSSLG-----S-CIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLS 217 (388)
Q Consensus 144 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 217 (388)
.. ..+..+..+.+|+.|.+.++.+......... . ++++..+.+.++... ..+.+....++|+.|++..+...
T Consensus 706 ~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 706 KR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred cc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEeccccc
Confidence 11 2334456667777777777766532221111 1 223333333333221 12222233477788888777666
Q ss_pred cccchhhhcCCCCcEEEcccccCc
Q 042573 218 GRIPKYFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 218 ~~~~~~l~~l~~L~~l~l~~n~~~ 241 (388)
..+.+....+..+..+-+..+.+.
T Consensus 784 e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 784 EDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred ccCCCHHHHhhhcccEEecccccc
Confidence 555555555555555444444444
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.00 E-value=7.4e-11 Score=109.29 Aligned_cols=215 Identities=31% Similarity=0.366 Sum_probs=136.7
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
++.+.+..|.+.. .-..+..+.+|+.|++.+|.|. .+...+..+++|++|++++|.|+... .+..++.|+.|++.+
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheecc
Confidence 6666777777764 2233677788888888888887 33333667888888888888886442 355677788888888
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccC
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEI 172 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 172 (388)
|.+... ..+..+++|+.+++++|.+....+.....+..+ +.+.+.+|.+.... .+..+..+..+++..|.++..-
T Consensus 150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l-~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISL-EELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred Ccchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccch-HHHhccCCchhccc--chHHHHHHHHhhcccccceecc
Confidence 888743 445557888888888888874433103555666 67777777776332 2333344555577777776332
Q ss_pred Chhhcccc--ccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCc
Q 042573 173 PSSLGSCI--RLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 173 ~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~ 241 (388)
+ +..+. .|+.+++++|++. ..+..+..+..+..|++.+|++..... +...+.+..+....|++.
T Consensus 225 ~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 225 G--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA 290 (414)
T ss_pred C--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence 2 12222 3788888888776 333455566777888888887764422 233344555555555544
No 40
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.95 E-value=9e-10 Score=99.28 Aligned_cols=53 Identities=49% Similarity=0.775 Sum_probs=47.9
Q ss_pred cccccCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCCCC
Q 042573 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGG 385 (388)
Q Consensus 330 ~~~~~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~~ 385 (388)
....|+|+|+..||++|+.+++||+||||.||||.+++| . .||||++.....+
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~-~--~vAVK~~~~~~~~ 113 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDG-T--VVAVKRLSSNSGQ 113 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCC-C--EEEEEEecCCCCc
Confidence 556799999999999999999999999999999999987 4 8999999876654
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.87 E-value=1.3e-10 Score=99.00 Aligned_cols=210 Identities=21% Similarity=0.310 Sum_probs=145.3
Q ss_pred hhhhccccccEEEeecCceee----cCc-------ccccCCCCCCEEECcCCccccCCCcc----ccCCCCCCEEEcccC
Q 042573 5 AVGNLSTRLGKLSVAENQLFG----NIP-------SGLTNLVNLELLDLGDNQFTGRIPGS----IGDLQKLQRLWLKGN 69 (388)
Q Consensus 5 ~~~~l~~~L~~L~l~~~~~~~----~~~-------~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~L~~n 69 (388)
.+.+.+. |+..++++- ++| .+| .++..+++|++|+||+|.+...-+.. +..+..|++|.|.+|
T Consensus 53 ~L~~~~~-L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 53 VLASKKE-LREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred HHhhccc-ceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 3445553 777777643 222 222 34567789999999999886443333 456788999999998
Q ss_pred ccccc-------------CCcCccCCCCCCEEeccCCccccc----CCcCCCCCCCCCEEeCCCCcCCCc----CChhhh
Q 042573 70 KFWGE-------------IPSSIGNLTSLAILDFAENMLEGS----IPSSLGKCQNLILLDLSKNNLSGT----IPTEVI 128 (388)
Q Consensus 70 ~~~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~ 128 (388)
.+... ...-...-+.|+.+....|++... +...|...+.|+.+.+.+|.+... ....+.
T Consensus 131 Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~ 210 (382)
T KOG1909|consen 131 GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE 210 (382)
T ss_pred CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH
Confidence 76411 112234567899999999987632 334567778999999999887522 234567
Q ss_pred ccCcccceEEccCccCcCC----CCcccccCCCCCEEEcccCcccccCChhh-----ccccccceecccCcccccc----
Q 042573 129 GLPSFSIYLNLSQNQLNGP----LPSNFGILKNLGVISLSENKLSGEIPSSL-----GSCIRLEQLVMNGNFFRGN---- 195 (388)
Q Consensus 129 ~~~~l~~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~---- 195 (388)
.++.+ +.|++.+|.++.. +..++..+++|+.|++++|.+...-...+ ...|.|+.|.+.+|.++..
T Consensus 211 ~~~~L-evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~ 289 (382)
T KOG1909|consen 211 HCPHL-EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA 289 (382)
T ss_pred hCCcc-eeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence 78888 8999999988743 34556778899999999998864332222 2468999999999988743
Q ss_pred CCccCcCCCCCCEEECCCCcCc
Q 042573 196 IPSSFSSLRGIEKLDLSRNNLS 217 (388)
Q Consensus 196 ~~~~~~~l~~L~~L~l~~n~l~ 217 (388)
+...+...+.|+.|+|++|++.
T Consensus 290 la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcchhhHHhcCCccccc
Confidence 2233445789999999999994
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=3.8e-10 Score=104.58 Aligned_cols=223 Identities=26% Similarity=0.257 Sum_probs=156.6
Q ss_pred hhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCC
Q 042573 6 VGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSL 85 (388)
Q Consensus 6 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 85 (388)
+..+.+ |+.|++.+|.+..+.. .+..+++|++|++++|.|+.+. .+..+..|+.|++++|.++.. ..+..+.+|
T Consensus 91 l~~~~~-l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKS-LEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSL 164 (414)
T ss_pred cccccc-eeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhh
Confidence 455665 9999999999986532 2788999999999999998433 366778899999999998643 356669999
Q ss_pred CEEeccCCcccccCC-cCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCC--CCCEEE
Q 042573 86 AILDFAENMLEGSIP-SSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILK--NLGVIS 162 (388)
Q Consensus 86 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~--~L~~L~ 162 (388)
+.+++++|.+....+ . ...+.+++.+++..|.+.... .+..+..+ ..+++..|.++...+ +..+. .|+.++
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l-~~~~l~~n~i~~~~~--l~~~~~~~L~~l~ 238 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKL-VLLSLLDNKISKLEG--LNELVMLHLRELY 238 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHH-HHhhcccccceeccC--cccchhHHHHHHh
Confidence 999999999985544 2 577889999999999886332 22333333 344777777764322 12222 388999
Q ss_pred cccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCcccc---ch-hhhcCCCCcEEEcccc
Q 042573 163 LSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRI---PK-YFENFLFLQKLNLSFN 238 (388)
Q Consensus 163 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~-~l~~l~~L~~l~l~~n 238 (388)
+++|++. ..+..+..+..+..|++..|++.... .+...+.+..+....+.+.... .. .....+.+..+.+..|
T Consensus 239 l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (414)
T KOG0531|consen 239 LSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELN 315 (414)
T ss_pred cccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccC
Confidence 9999987 33345667788999999999886442 2344566777777777765321 11 1344566777777777
Q ss_pred cCccc
Q 042573 239 HFEGE 243 (388)
Q Consensus 239 ~~~~~ 243 (388)
+....
T Consensus 316 ~~~~~ 320 (414)
T KOG0531|consen 316 PIRKI 320 (414)
T ss_pred ccccc
Confidence 76654
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=7.4e-10 Score=109.85 Aligned_cols=200 Identities=27% Similarity=0.353 Sum_probs=136.4
Q ss_pred cccEEEeecCceeecCcccccCCCCCCEEECcCCc--cccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEe
Q 042573 12 RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQ--FTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILD 89 (388)
Q Consensus 12 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 89 (388)
..+.+.+-+|.+.. ++.. .+++.|++|-+..|. +.......|..++.|+.|||++|.-.+.+|..++.+-+|++|+
T Consensus 524 ~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 37888888888763 3333 345689999999996 5544555688899999999999887789999999999999999
Q ss_pred ccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCc--CCCCcccccCCCCCEEEcccCc
Q 042573 90 FAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLN--GPLPSNFGILKNLGVISLSENK 167 (388)
Q Consensus 90 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~~n~ 167 (388)
+++..+. .+|..+.++..|.+|++..+.-....+.....+..| ++|.+...... ...-..+.++.+|+.+......
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L-r~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL-RVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccc-cEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 9999999 789999999999999999877655566666778888 89988776522 1122234455555555543322
Q ss_pred ccccCChhhccccccc----eecccCccccccCCccCcCCCCCCEEECCCCcCcc
Q 042573 168 LSGEIPSSLGSCIRLE----QLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSG 218 (388)
Q Consensus 168 l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 218 (388)
. .+...+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+..
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 2 1111223333333 2232222222 334455667777788777777653
No 44
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=98.76 E-value=5.5e-09 Score=98.13 Aligned_cols=59 Identities=32% Similarity=0.439 Sum_probs=49.7
Q ss_pred cccccCHHHHHHhhcCCCcC---------ceeecCCCceEEEEEe-CCCCceeEEEEEEeecCCCCCCC
Q 042573 330 SVLRVSYENLFKATDGFSLE---------NLIGAGSFGSVYKGIL-THDDHETLVAVKVLNLEHGGASK 388 (388)
Q Consensus 330 ~~~~~~~~~l~~at~~f~~~---------~~lg~g~fg~vy~g~l-~~g~~~~~vavK~l~~~~~~~~~ 388 (388)
.+..++|+|...|.++|+.| .+||.|.||+||+|+| ..|..+..||||.|+.++++++|
T Consensus 606 YiDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gytekqr 674 (996)
T KOG0196|consen 606 YIDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQR 674 (996)
T ss_pred ecCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHH
Confidence 45689999999999999663 6899999999999999 23446679999999999988764
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=4.8e-09 Score=87.78 Aligned_cols=90 Identities=26% Similarity=0.313 Sum_probs=52.3
Q ss_pred hhhccccccEEEeecCceee--cCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCccc-ccCCcCccCC
Q 042573 6 VGNLSTRLGKLSVAENQLFG--NIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFW-GEIPSSIGNL 82 (388)
Q Consensus 6 ~~~l~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l 82 (388)
|+...+.++++||.+|.|++ .+..-+.++|+|++|+|++|++...+...-....+|+.|.|.+..+. +.....+..+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 33334457777777777763 23333567777777777777776433322134567777777666543 1223345566
Q ss_pred CCCCEEeccCCcc
Q 042573 83 TSLAILDFAENML 95 (388)
Q Consensus 83 ~~L~~L~l~~n~l 95 (388)
|.+++|+++.|++
T Consensus 146 P~vtelHmS~N~~ 158 (418)
T KOG2982|consen 146 PKVTELHMSDNSL 158 (418)
T ss_pred hhhhhhhhccchh
Confidence 7777777777643
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.67 E-value=1.1e-10 Score=108.47 Aligned_cols=181 Identities=26% Similarity=0.265 Sum_probs=112.9
Q ss_pred CccccCCCCCCEEEcccCcccccCCcCccCC-CCCCEEeccCCcccc---cCC---cCCC---CCCCCCEEeCCCCcCCC
Q 042573 52 PGSIGDLQKLQRLWLKGNKFWGEIPSSIGNL-TSLAILDFAENMLEG---SIP---SSLG---KCQNLILLDLSKNNLSG 121 (388)
Q Consensus 52 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~---~~~---~~~~---~l~~L~~L~l~~n~~~~ 121 (388)
|-.+..+..|+.|.|+++.+.. ..++..+ ..|+.|.. +|.++. .+. ..+. ....|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 4455567778888888877653 1111111 12333322 122110 000 1111 1235667777778776
Q ss_pred cCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChh-hccccccceecccCccccccCCccC
Q 042573 122 TIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSS-LGSCIRLEQLVMNGNFFRGNIPSSF 200 (388)
Q Consensus 122 ~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 200 (388)
.....+.-++.+ +.|+|+.|+++... .+..+++|++|||++|.+. .+|.. -.++ .|+.|++.+|.++.. ..+
T Consensus 178 ~mD~SLqll~al-e~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gi 250 (1096)
T KOG1859|consen 178 LMDESLQLLPAL-ESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGI 250 (1096)
T ss_pred hHHHHHHHHHHh-hhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhH
Confidence 555666667777 88888888887553 6778888889999988887 33332 2233 388888888888744 344
Q ss_pred cCCCCCCEEECCCCcCcccc-chhhhcCCCCcEEEcccccCccc
Q 042573 201 SSLRGIEKLDLSRNNLSGRI-PKYFENFLFLQKLNLSFNHFEGE 243 (388)
Q Consensus 201 ~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~l~l~~n~~~~~ 243 (388)
.++.+|+.||+++|.+.+.. -..+..+..|+.|++.+|++.|.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 57788888899888876532 23355566788888888888765
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=1.6e-09 Score=101.01 Aligned_cols=126 Identities=25% Similarity=0.280 Sum_probs=98.2
Q ss_pred ceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCC
Q 042573 135 IYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN 214 (388)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 214 (388)
...+++.|.+. .+...++-++.|+.|+|++|+++... .+..++.|++|+|+.|++. .+|..-..-..|..|.+++|
T Consensus 167 ~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 167 ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeeccc
Confidence 56677888877 56677888899999999999997443 6788999999999999998 44432222245999999999
Q ss_pred cCccccchhhhcCCCCcEEEcccccCcccCC--CCCcCCCCccccccCCCCCcC
Q 042573 215 NLSGRIPKYFENFLFLQKLNLSFNHFEGEVP--IKGVFSNSSAISLDGNDNLCG 266 (388)
Q Consensus 215 ~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~c~ 266 (388)
.++.. ..+..+.+|+.||+++|-+.+.-. ..+.+..+..+.+.|||.-|.
T Consensus 243 ~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 243 ALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred HHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 99854 347788999999999999887533 345667778889999997774
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=2.2e-08 Score=83.96 Aligned_cols=213 Identities=19% Similarity=0.154 Sum_probs=128.4
Q ss_pred cCCCCCCEEECcCCccccCCC-ccc-cCCCCCCEEEcccCcccc--cCCcCccCCCCCCEEeccCCcccccCCcCCCCCC
Q 042573 32 TNLVNLELLDLGDNQFTGRIP-GSI-GDLQKLQRLWLKGNKFWG--EIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQ 107 (388)
Q Consensus 32 ~~l~~L~~L~l~~n~~~~~~~-~~~-~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 107 (388)
.....++.|.+.++.|...-. ..| ..+..++.+||.+|.++. .+..-+.++|.|+.|+|+.|.+...+...=....
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 334456667777776642111 112 246788889999888752 2333457889999999999988743322213556
Q ss_pred CCCEEeCCCCcCCCc-CChhhhccCcccceEEccCccCcCCC--CcccccC-CCCCEEEcccCcccc--cCChhhccccc
Q 042573 108 NLILLDLSKNNLSGT-IPTEVIGLPSFSIYLNLSQNQLNGPL--PSNFGIL-KNLGVISLSENKLSG--EIPSSLGSCIR 181 (388)
Q Consensus 108 ~L~~L~l~~n~~~~~-~~~~~~~~~~l~~~L~l~~n~~~~~~--~~~~~~l-~~L~~L~L~~n~l~~--~~~~~~~~l~~ 181 (388)
+|+.|.|.+..+.-. ....+..+|.+ +.|.++.|.+.... ....... +.+.+|.+..|...- .....-..+|+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~v-telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKV-TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhh-hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 888888877766422 22334556666 67777777443211 1111111 245555555554321 01111123567
Q ss_pred cceecccCcccccc-CCccCcCCCCCCEEECCCCcCcccc-chhhhcCCCCcEEEcccccCcccCC
Q 042573 182 LEQLVMNGNFFRGN-IPSSFSSLRGIEKLDLSRNNLSGRI-PKYFENFLFLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 182 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~l~l~~n~~~~~~~ 245 (388)
+..+.+..|.+.+. .......+|.+..|+|+.|+|.+.. -+.+.+++.|..+.++++++.....
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 77888888877543 2344455677788999999887653 3567888999999999999876543
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=9.1e-10 Score=92.05 Aligned_cols=177 Identities=23% Similarity=0.206 Sum_probs=94.2
Q ss_pred CCCEEECcCCcccc-CCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCccccc--CCcCCCCCCCCCEE
Q 042573 36 NLELLDLGDNQFTG-RIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGS--IPSSLGKCQNLILL 112 (388)
Q Consensus 36 ~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L 112 (388)
+|++|||+...|+. ..-..+..|.+|+.|.|.++++...+...+..-.+|+.|+|+.+.--.. ..-.+.++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777777776652 1223455677777777777777666666677777777777776542211 11235677777778
Q ss_pred eCCCCcCCCcCC-hhhhccCcccceEEccCccCc---CCCCcccccCCCCCEEEcccCc-ccccCChhhccccccceecc
Q 042573 113 DLSKNNLSGTIP-TEVIGLPSFSIYLNLSQNQLN---GPLPSNFGILKNLGVISLSENK-LSGEIPSSLGSCIRLEQLVM 187 (388)
Q Consensus 113 ~l~~n~~~~~~~-~~~~~~~~l~~~L~l~~n~~~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 187 (388)
++++|.+....- ..+.....-++.|+++++.-. ..+..-...+++|..|||++|. ++......|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 887776653221 111121111155555554321 0111112445666667766653 23222233445566666666
Q ss_pred cCccccccCCc---cCcCCCCCCEEECCCC
Q 042573 188 NGNFFRGNIPS---SFSSLRGIEKLDLSRN 214 (388)
Q Consensus 188 ~~n~l~~~~~~---~~~~l~~L~~L~l~~n 214 (388)
+.|.. ++|. .+...|+|.+||+.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66542 2332 2334456666665554
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.2e-09 Score=89.77 Aligned_cols=180 Identities=22% Similarity=0.177 Sum_probs=129.6
Q ss_pred cccccEEEeecCceeecC-cccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCC--cCccCCCCCC
Q 042573 10 STRLGKLSVAENQLFGNI-PSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIP--SSIGNLTSLA 86 (388)
Q Consensus 10 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~ 86 (388)
.+.|++|||+...++-.. -.-++.+..|+.|.|.++++...+...+++-.+|+.|+|+.+.-.+... -.+.+++.|.
T Consensus 184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 345999999999988532 2335788999999999999987777788888999999999875332211 2357899999
Q ss_pred EEeccCCcccccCCcC-CC-CCCCCCEEeCCCCcCC---CcCChhhhccCcccceEEccCccC-cCCCCcccccCCCCCE
Q 042573 87 ILDFAENMLEGSIPSS-LG-KCQNLILLDLSKNNLS---GTIPTEVIGLPSFSIYLNLSQNQL-NGPLPSNFGILKNLGV 160 (388)
Q Consensus 87 ~L~l~~n~l~~~~~~~-~~-~l~~L~~L~l~~n~~~---~~~~~~~~~~~~l~~~L~l~~n~~-~~~~~~~~~~l~~L~~ 160 (388)
+|+|+.+.+....... +. --++|+.|+++++.-. ..+..-...++.+ ..||+++|.. +......|.+++.|++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l-~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNL-VHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCce-eeeccccccccCchHHHHHHhcchhee
Confidence 9999999876432111 11 1268889999875421 1222234677888 8999999854 4334456778899999
Q ss_pred EEcccCcccccCChh---hccccccceecccCccc
Q 042573 161 ISLSENKLSGEIPSS---LGSCIRLEQLVMNGNFF 192 (388)
Q Consensus 161 L~L~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l 192 (388)
|.++.|.. ++|.. +...|+|.+|++.++--
T Consensus 343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 99999974 45544 56778999999988643
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.41 E-value=1.3e-08 Score=75.39 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=50.7
Q ss_pred EEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcC
Q 042573 137 LNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNL 216 (388)
Q Consensus 137 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 216 (388)
.++++|.+....+......+.++.|+|++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+..+|.+
T Consensus 58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred EecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 445555554322222233345555555556555 44555555666666666666554 4444444455555566555555
Q ss_pred ccccchhhhcCCCCcEEEcccccCcccCC
Q 042573 217 SGRIPKYFENFLFLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 217 ~~~~~~~l~~l~~L~~l~l~~n~~~~~~~ 245 (388)
..+.-+ +......-..++.+++|.+.++
T Consensus 136 ~eid~d-l~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 136 AEIDVD-LFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred ccCcHH-HhccccHHHHHhcCCcccccCc
Confidence 522222 2222222223345555554444
No 52
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=98.25 E-value=1.2e-06 Score=78.24 Aligned_cols=30 Identities=47% Similarity=0.732 Sum_probs=25.3
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
..++|+|+||.||||.|.+. .||||.....
T Consensus 215 ~eli~~Grfg~V~KaqL~~~----~VAVKifp~~ 244 (534)
T KOG3653|consen 215 LELIGRGRFGCVWKAQLDNR----LVAVKIFPEQ 244 (534)
T ss_pred HHHhhcCccceeehhhccCc----eeEEEecCHH
Confidence 36799999999999999654 8999988544
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=4.3e-08 Score=72.66 Aligned_cols=105 Identities=23% Similarity=0.288 Sum_probs=58.5
Q ss_pred ccEEEeecCceeec--CcccccCCCCCCEEECcCCccccCCCccc-cCCCCCCEEEcccCcccccCCcCccCCCCCCEEe
Q 042573 13 LGKLSVAENQLFGN--IPSGLTNLVNLELLDLGDNQFTGRIPGSI-GDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILD 89 (388)
Q Consensus 13 L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 89 (388)
+..++|+.|++..+ .+..+....+|...+|++|.+. .+|..| ..++.+++|++.+|.+. .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 44556666655421 1122344455666666666665 333333 34456666666666665 5555566666666666
Q ss_pred ccCCcccccCCcCCCCCCCCCEEeCCCCcCC
Q 042573 90 FAENMLEGSIPSSLGKCQNLILLDLSKNNLS 120 (388)
Q Consensus 90 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 120 (388)
++.|.+. ..|..+..+.+|-.|+..+|...
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 6666665 44555555556666666555554
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.14 E-value=4.5e-06 Score=66.41 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=68.9
Q ss_pred ceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccC-CccCcCCCCCCEEECCC
Q 042573 135 IYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNI-PSSFSSLRGIEKLDLSR 213 (388)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~ 213 (388)
..+++.+|.+... ..|..++.|.+|.+++|+|+.+.|..-.-++.|..|.+.+|.+.... -..+..+|.|++|.+-+
T Consensus 45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 5667777766532 34667777888888888887666655555677888888887765331 23455677888888888
Q ss_pred CcCcccc---chhhhcCCCCcEEEccccc
Q 042573 214 NNLSGRI---PKYFENFLFLQKLNLSFNH 239 (388)
Q Consensus 214 n~l~~~~---~~~l~~l~~L~~l~l~~n~ 239 (388)
|.++... ...+..+|+|+.||++.-.
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhhh
Confidence 8776442 2356677888888876543
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=8.3e-07 Score=73.74 Aligned_cols=42 Identities=21% Similarity=0.420 Sum_probs=23.8
Q ss_pred ccCCCCCCEEeccCCcccccCCc----CCCCCCCCCEEeCCCCcCC
Q 042573 79 IGNLTSLAILDFAENMLEGSIPS----SLGKCQNLILLDLSKNNLS 120 (388)
Q Consensus 79 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~ 120 (388)
+.++++|+..+|++|.+....|. .+++-..|.+|.+++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 34566666666666665544332 2344566666666666554
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=2e-05 Score=71.03 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=32.6
Q ss_pred ccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCC
Q 042573 31 LTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAEN 93 (388)
Q Consensus 31 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 93 (388)
+..+++++.|++++|.+. .+|. + -.+|+.|.++++.-...+|..+ .++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 344567777777777665 3442 1 2347777776654333455433 246677777666
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=4.2e-06 Score=50.08 Aligned_cols=35 Identities=40% Similarity=0.671 Sum_probs=16.8
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccc
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFT 48 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 48 (388)
|++|++++|+++. +|..+.+|++|++|++++|.++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 5555555555553 2333555555555555555544
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.99 E-value=9.2e-06 Score=64.69 Aligned_cols=125 Identities=22% Similarity=0.222 Sum_probs=75.4
Q ss_pred ccEEEeecCceeecCcccc-cCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 13 LGKLSVAENQLFGNIPSGL-TNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
=++++|.+.++..+.- + .-......+||++|.+. .-..|..++.|.+|.|.+|+|+.+.|.--..+++|+.|.|.
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchhh--ccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 3455665555542211 1 11235677777777775 22346677778888888888776666555566778888888
Q ss_pred CCccccc-CCcCCCCCCCCCEEeCCCCcCCCcC---ChhhhccCcccceEEccCc
Q 042573 92 ENMLEGS-IPSSLGKCQNLILLDLSKNNLSGTI---PTEVIGLPSFSIYLNLSQN 142 (388)
Q Consensus 92 ~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~l~~~L~l~~n 142 (388)
+|.+... .-..+..+|.|++|.+-+|.++..- ...++.++.+ +.||+.+-
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l-~~LDF~kV 150 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL-RTLDFQKV 150 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc-eEeehhhh
Confidence 7776522 1234566777888877777765221 1235566676 77776553
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.94 E-value=3.3e-05 Score=59.09 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=35.8
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
|+.+.+.. .+..+...+|.++++|+.+.+.++ +.......|.+++.|+.+.+.. .+.......|..+++|+.+++..
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 55555542 344444445555555555555443 3333334455554555555543 22223333444455555555543
Q ss_pred CcccccCCcCCCCCCCCCEEeCC
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLS 115 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~ 115 (388)
+ +.......|.++ +|+.+.+.
T Consensus 91 ~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 91 N-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T--BEEHTTTTTT--T--EEE-T
T ss_pred c-ccEEchhhhcCC-CceEEEEC
Confidence 3 222223344443 44444443
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.92 E-value=3.9e-05 Score=58.67 Aligned_cols=126 Identities=15% Similarity=0.187 Sum_probs=73.5
Q ss_pred CcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCC
Q 042573 27 IPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKC 106 (388)
Q Consensus 27 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 106 (388)
...+|.++.+|+.+.+.. .+..+....|.++.+|+.+.+..+ +......+|.++.+|+.+.+.. .+.......|..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 346789999999999985 566567788999999999999875 6656667899998999999976 4444556788889
Q ss_pred CCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCC
Q 042573 107 QNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLG 159 (388)
Q Consensus 107 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~ 159 (388)
++|+.+++..+ +.......+... .+ +.+.+.. .+.......|.++++|+
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l-~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NL-KEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T---EEE-TT-B-SS----GGG------
T ss_pred ccccccccCcc-ccEEchhhhcCC-Cc-eEEEECC-CccEECCccccccccCC
Confidence 99999999765 543444556665 77 7888775 45545667788777663
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.89 E-value=4.8e-06 Score=69.35 Aligned_cols=141 Identities=22% Similarity=0.235 Sum_probs=97.8
Q ss_pred cCCCCCCCCCEEeCCCCcCCCcCChhh----hccCcccceEEccCccCcCCCCccc-------------ccCCCCCEEEc
Q 042573 101 SSLGKCQNLILLDLSKNNLSGTIPTEV----IGLPSFSIYLNLSQNQLNGPLPSNF-------------GILKNLGVISL 163 (388)
Q Consensus 101 ~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~~~~l~~~L~l~~n~~~~~~~~~~-------------~~l~~L~~L~L 163 (388)
..+.+||+|+.++|+.|.+....|..+ ...+.+ ..|.+++|.+.-.-...+ .+-|.|+....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l-~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDL-VHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCc-eeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 456789999999999999987777654 345566 889999998753222222 23478999999
Q ss_pred ccCcccccCC----hhhccccccceecccCccccccC-----CccCcCCCCCCEEECCCCcCcccc----chhhhcCCCC
Q 042573 164 SENKLSGEIP----SSLGSCIRLEQLVMNGNFFRGNI-----PSSFSSLRGIEKLDLSRNNLSGRI----PKYFENFLFL 230 (388)
Q Consensus 164 ~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L 230 (388)
..|++..-.. ..+..-..|.++.+..|.+.... -..+..+.+|+.||+.+|-++... ...+..++.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 9998863221 12333457888899988775321 112346788999999999887543 3345667788
Q ss_pred cEEEcccccCcc
Q 042573 231 QKLNLSFNHFEG 242 (388)
Q Consensus 231 ~~l~l~~n~~~~ 242 (388)
+.|.+.+|-++.
T Consensus 245 rEL~lnDClls~ 256 (388)
T COG5238 245 RELRLNDCLLSN 256 (388)
T ss_pred hhccccchhhcc
Confidence 999888887764
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=6.8e-05 Score=67.64 Aligned_cols=136 Identities=15% Similarity=0.226 Sum_probs=79.5
Q ss_pred cCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCC-cCCCcCChhhhccCccc
Q 042573 56 GDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKN-NLSGTIPTEVIGLPSFS 134 (388)
Q Consensus 56 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~l~ 134 (388)
..+.+++.|++++|.++ .+|. -..+|++|.++++.-...+|..+. ++|+.|++++| .+. .+|.. +
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------L- 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPES------V- 114 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccccc------c-
Confidence 34688999999988776 4452 234689999887544335565553 57888888887 443 34432 2
Q ss_pred ceEEccCccCcCCCCcccccC-CCCCEEEcccCccc--ccCChhhccccccceecccCccccccCCccCcCCCCCCEEEC
Q 042573 135 IYLNLSQNQLNGPLPSNFGIL-KNLGVISLSENKLS--GEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDL 211 (388)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 211 (388)
+.|++..+.... +..+ ++|+.|.+.++... ...+.. -.++|+.|.+++|... ..|..+. .+|+.|++
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 666766554431 1222 35667776443211 011111 1246888888877654 3444443 57888888
Q ss_pred CCCc
Q 042573 212 SRNN 215 (388)
Q Consensus 212 ~~n~ 215 (388)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 7663
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=2.2e-05 Score=46.99 Aligned_cols=36 Identities=39% Similarity=0.578 Sum_probs=18.8
Q ss_pred CCCEEECCCCcCccccchhhhcCCCCcEEEcccccCc
Q 042573 205 GIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 205 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~ 241 (388)
+|++|++++|+|+. +|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 45556666665552 3334555666666666666554
No 64
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=97.79 E-value=0.00015 Score=69.71 Aligned_cols=37 Identities=38% Similarity=0.636 Sum_probs=28.1
Q ss_pred cCceeecCCCceEEEEEe-CCCC-ceeEEEEEEeecCCC
Q 042573 348 LENLIGAGSFGSVYKGIL-THDD-HETLVAVKVLNLEHG 384 (388)
Q Consensus 348 ~~~~lg~g~fg~vy~g~l-~~g~-~~~~vavK~l~~~~~ 384 (388)
.+.+||+|+||+||||.+ +.|. ...+||||.+.....
T Consensus 700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~ 738 (1177)
T KOG1025|consen 700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTS 738 (1177)
T ss_pred hhceeccccceeEEeeeEecCCceecceeEEEEeeccCC
Confidence 357899999999999988 5542 223899999976543
No 65
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.64 E-value=0.00029 Score=62.96 Aligned_cols=30 Identities=40% Similarity=0.743 Sum_probs=25.4
Q ss_pred cCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 348 LENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 348 ~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
-...||+|.||+||||.++++ -||||.-..
T Consensus 215 L~e~IGkGRyGEVwrG~wrGe----~VAVKiF~s 244 (513)
T KOG2052|consen 215 LQEIIGKGRFGEVWRGRWRGE----DVAVKIFSS 244 (513)
T ss_pred EEEEecCccccceeeccccCC----ceEEEEecc
Confidence 346799999999999999887 599998753
No 66
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=2.2e-05 Score=76.65 Aligned_cols=104 Identities=24% Similarity=0.345 Sum_probs=47.1
Q ss_pred ccEEEeecCceee-cCcccc-cCCCCCCEEECcCCccccC-CCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEe
Q 042573 13 LGKLSVAENQLFG-NIPSGL-TNLVNLELLDLGDNQFTGR-IPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILD 89 (388)
Q Consensus 13 L~~L~l~~~~~~~-~~~~~~-~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 89 (388)
|++|++++..... .-|..+ .-+|.|+.|.+.+-.+... +-....++++|..||+++++++.. .+++++++|+.|.
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLS 201 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHh
Confidence 5556665543221 111222 2345566666555444211 112233455566666665555422 4455555555555
Q ss_pred ccCCcccc-cCCcCCCCCCCCCEEeCCCCc
Q 042573 90 FAENMLEG-SIPSSLGKCQNLILLDLSKNN 118 (388)
Q Consensus 90 l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 118 (388)
+.+=.+.. ..-..+-++++|+.||++...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 55433331 111123345555666655543
No 67
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=97.56 E-value=4e-05 Score=70.91 Aligned_cols=41 Identities=41% Similarity=0.706 Sum_probs=31.7
Q ss_pred cccCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCCC
Q 042573 332 LRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHG 384 (388)
Q Consensus 332 ~~~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~ 384 (388)
..+.++|+..+ ..||+|.||+||||++.|. ||||.|..+..
T Consensus 387 WeIp~~ev~l~-------~rIGsGsFGtV~Rg~whGd-----VAVK~Lnv~~p 427 (678)
T KOG0193|consen 387 WEIPPEEVLLG-------ERIGSGSFGTVYRGRWHGD-----VAVKLLNVDDP 427 (678)
T ss_pred cccCHHHhhcc-------ceeccccccceeecccccc-----eEEEEEecCCC
Confidence 34555555554 6799999999999999643 99999987654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=7.7e-06 Score=68.37 Aligned_cols=96 Identities=28% Similarity=0.273 Sum_probs=70.5
Q ss_pred ceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccC-CccCcCCCCCCEEECCC
Q 042573 135 IYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNI-PSSFSSLRGIEKLDLSR 213 (388)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~ 213 (388)
+.|+++++.++++ .....|+.|+.|.|+-|+|+.. ..+..|.+|++|+|..|.|.+.- -..+.++|+|+.|.|..
T Consensus 22 kKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 22 KKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 5677777777744 2346788899999999998744 34778889999999999887542 23456789999999998
Q ss_pred CcCccccc-----hhhhcCCCCcEEE
Q 042573 214 NNLSGRIP-----KYFENFLFLQKLN 234 (388)
Q Consensus 214 n~l~~~~~-----~~l~~l~~L~~l~ 234 (388)
|.-.+..+ ..+..+|+|++||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 87655433 2566788888875
No 69
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=3.6e-05 Score=75.15 Aligned_cols=132 Identities=20% Similarity=0.308 Sum_probs=60.7
Q ss_pred CCCCEEECcCCccccC-CCcccc-CCCCCCEEEcccCccccc-CCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCE
Q 042573 35 VNLELLDLGDNQFTGR-IPGSIG-DLQKLQRLWLKGNKFWGE-IPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLIL 111 (388)
Q Consensus 35 ~~L~~L~l~~n~~~~~-~~~~~~-~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 111 (388)
.+|+.|++++...... -+..++ -+|.|+.|.+.+-.+... .-....++++|..||+++.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 3566666655433211 111122 355666666655433211 112234556666666666655532 44555566666
Q ss_pred EeCCCCcCCC-cCChhhhccCcccceEEccCccCcCCC------CcccccCCCCCEEEcccCccc
Q 042573 112 LDLSKNNLSG-TIPTEVIGLPSFSIYLNLSQNQLNGPL------PSNFGILKNLGVISLSENKLS 169 (388)
Q Consensus 112 L~l~~n~~~~-~~~~~~~~~~~l~~~L~l~~n~~~~~~------~~~~~~l~~L~~L~L~~n~l~ 169 (388)
|.+.+-.+.. ..-..++.+..| +.||++........ -+.-..+|+|+.||.++..+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L-~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKL-RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCC-CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 6555443331 112244555555 56666554433211 011123456666666655544
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=0.00011 Score=61.24 Aligned_cols=108 Identities=26% Similarity=0.330 Sum_probs=74.4
Q ss_pred CcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccC--cccccCCcCccCCCCCCEEeccCCcccccCCcC--
Q 042573 27 IPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGN--KFWGEIPSSIGNLTSLAILDFAENMLEGSIPSS-- 102 (388)
Q Consensus 27 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-- 102 (388)
+......+..|+.|++.+..++. + ..|-.+++|++|.++.| .+.+.++-....+++|++|+++.|++.. +++
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 44556667788888888887762 2 24567889999999999 5655555555567999999999999873 333
Q ss_pred -CCCCCCCCEEeCCCCcCCCcCC---hhhhccCcccceEEc
Q 042573 103 -LGKCQNLILLDLSKNNLSGTIP---TEVIGLPSFSIYLNL 139 (388)
Q Consensus 103 -~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~l~~~L~l 139 (388)
+..+.+|..|++.+|..+.... ..|.-++++ ++|+-
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L-~~LD~ 150 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSL-KYLDG 150 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhh-ccccc
Confidence 4566788889998887664221 234455555 56553
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=6.7e-06 Score=68.71 Aligned_cols=97 Identities=26% Similarity=0.184 Sum_probs=71.3
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCC-cCccCCCCCCEEecc
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIP-SSIGNLTSLAILDFA 91 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~ 91 (388)
.+.|++.+|.++++. ....|+.|++|.|+-|+|+..- .|..|.+|++|+|..|.|..... ..+.++++|+.|.|.
T Consensus 21 vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 778899999988652 3467899999999999997433 47789999999999998763221 245788888999888
Q ss_pred CCcccccCCc-----CCCCCCCCCEEe
Q 042573 92 ENMLEGSIPS-----SLGKCQNLILLD 113 (388)
Q Consensus 92 ~n~l~~~~~~-----~~~~l~~L~~L~ 113 (388)
.|.-.+.-+. .+.-+|+|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 8876654332 345567777775
No 72
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=97.07 E-value=0.00044 Score=65.33 Aligned_cols=41 Identities=27% Similarity=0.669 Sum_probs=31.3
Q ss_pred hhcCCCcCceeecCCCceEEEEEeCC--------------CCceeEEEEEEeecC
Q 042573 342 ATDGFSLENLIGAGSFGSVYKGILTH--------------DDHETLVAVKVLNLE 382 (388)
Q Consensus 342 at~~f~~~~~lg~g~fg~vy~g~l~~--------------g~~~~~vavK~l~~~ 382 (388)
..++|...++||+|+||.||+|.+.. ...+..||||++...
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~ 197 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMD 197 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEeccc
Confidence 46789999999999999999997521 112347999998653
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.00048 Score=57.42 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=75.0
Q ss_pred CCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCC--cccccCCcCCCCCCCCCEEeCCCCcCCCcCChh--
Q 042573 51 IPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAEN--MLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTE-- 126 (388)
Q Consensus 51 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-- 126 (388)
+..-...+..|+.|.+.+..+++. ..|-.+++|++|.++.| .+.+.++....++|+|++++++.|++.. .+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 444444567788888877776532 24557889999999999 6666666667778999999999999873 333
Q ss_pred -hhccCcccceEEccCccCcCCCC---cccccCCCCCEEEccc
Q 042573 127 -VIGLPSFSIYLNLSQNQLNGPLP---SNFGILKNLGVISLSE 165 (388)
Q Consensus 127 -~~~~~~l~~~L~l~~n~~~~~~~---~~~~~l~~L~~L~L~~ 165 (388)
+..+.+| ..|++.+|..+.... ..|.-+++|++|+-.+
T Consensus 111 pl~~l~nL-~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 111 PLKELENL-KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcch-hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 3455566 788888887765321 2344456666665443
No 74
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.00078 Score=58.78 Aligned_cols=37 Identities=38% Similarity=0.591 Sum_probs=29.1
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCCC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHG 384 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~ 384 (388)
+...+++|+|+||.||+|++..- +..|||||...+..
T Consensus 26 ~~~~~liG~GsFg~Vyq~~~~e~--~~~vAIKKv~~d~r 62 (364)
T KOG0658|consen 26 YEAVRLIGSGSFGVVYQAKLRET--EEEVAIKKVLQDKR 62 (364)
T ss_pred EEeeEEEeecccceEEEEEEcCC--CceeEEEEecCCCC
Confidence 34468999999999999999543 23899999977654
No 75
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.00053 Score=66.17 Aligned_cols=40 Identities=30% Similarity=0.452 Sum_probs=31.0
Q ss_pred CCcCceeecCCCceEEEEEeCC---CCceeEEEEEEeecCCCC
Q 042573 346 FSLENLIGAGSFGSVYKGILTH---DDHETLVAVKVLNLEHGG 385 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~---g~~~~~vavK~l~~~~~~ 385 (388)
....+.||+|+||.||+|+..+ +.+.+.||||.|++...+
T Consensus 488 i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~ 530 (774)
T KOG1026|consen 488 IVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAEN 530 (774)
T ss_pred eeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccH
Confidence 3334679999999999999844 225569999999987654
No 76
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=96.67 E-value=0.0033 Score=60.86 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=31.4
Q ss_pred hhcCCCcCceeecCCCceEEEEEeCCC--CceeEEEEEEeec
Q 042573 342 ATDGFSLENLIGAGSFGSVYKGILTHD--DHETLVAVKVLNL 381 (388)
Q Consensus 342 at~~f~~~~~lg~g~fg~vy~g~l~~g--~~~~~vavK~l~~ 381 (388)
..++|...+.||+|+||.||+|+..+. ..+..||||++..
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~ 171 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE 171 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence 567888889999999999999998542 0023899999864
No 77
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=0.0034 Score=51.83 Aligned_cols=38 Identities=34% Similarity=0.495 Sum_probs=30.8
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.++|.-++.||+|.||.||.|+..... ..||+|.+-++
T Consensus 21 l~dfeigr~LgkgkFG~vYlarekks~--~IvalKVlfKs 58 (281)
T KOG0580|consen 21 LDDFEIGRPLGKGKFGNVYLAREKKSL--FIVALKVLFKS 58 (281)
T ss_pred hhhccccccccCCccccEeEeeeccCC--cEEEEeeeeHH
Confidence 456777799999999999999996543 38999998544
No 78
>PTZ00284 protein kinase; Provisional
Probab=96.20 E-value=0.0034 Score=59.59 Aligned_cols=43 Identities=28% Similarity=0.464 Sum_probs=33.9
Q ss_pred HHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 337 ENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 337 ~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
+++...+++|...+.||+|+||.||+|+.... +..||||.++.
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~--~~~vAvK~i~~ 164 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKR--KEYCAVKIVRN 164 (467)
T ss_pred CccccCCCcEEEEEEEEeccCEEEEEEEEcCC--CeEEEEEEEec
Confidence 44555677888888999999999999987543 23899999864
No 79
>PRK09188 serine/threonine protein kinase; Provisional
Probab=96.20 E-value=0.0059 Score=55.26 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=29.7
Q ss_pred hhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 342 ATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 342 at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
..++|.....||+|+||.||+|+.... .|+.||||++..
T Consensus 16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~-~~~~vAiK~~~~ 54 (365)
T PRK09188 16 LSARFVETAVLKRDVFSTVERGYFAGD-PGTARAVRRRVS 54 (365)
T ss_pred ccCCceEccEEeecCcEEEEEEEEcCC-CCeEEEEEEecc
Confidence 345677789999999999999987431 123789999754
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.09 E-value=0.0032 Score=31.20 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=11.9
Q ss_pred ccEEEeecCceeecCcccccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTN 33 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~ 33 (388)
|++|+|++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 666777777666 44444543
No 81
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=96.05 E-value=0.0032 Score=63.32 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=29.1
Q ss_pred CceeecCCCceEEEEEeCCCC-c--eeEEEEEEeecCCCCC
Q 042573 349 ENLIGAGSFGSVYKGILTHDD-H--ETLVAVKVLNLEHGGA 386 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~-~--~~~vavK~l~~~~~~~ 386 (388)
.+.||+|.||+||+|++.+-. . ...||||+|.....++
T Consensus 697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~ 737 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQ 737 (1025)
T ss_pred eeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHH
Confidence 467999999999999996531 1 2259999998876554
No 82
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.01 E-value=0.0027 Score=59.20 Aligned_cols=39 Identities=33% Similarity=0.435 Sum_probs=29.6
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCCCCC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHGGA 386 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~~~ 386 (388)
|.+-+.||.|+||.||-++=-. ...+||||++....++.
T Consensus 28 f~dLrEIGHGSFGAVYfArd~~--n~evVAIKKMsySGKQs 66 (948)
T KOG0577|consen 28 FSDLREIGHGSFGAVYFARDVR--NSEVVAIKKMSYSGKQS 66 (948)
T ss_pred HHHHHHhcCCccceeEEeeccC--ccceeeeeecccccccc
Confidence 4555779999999999996532 22389999998876654
No 83
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=95.90 E-value=0.0029 Score=54.80 Aligned_cols=38 Identities=32% Similarity=0.549 Sum_probs=29.1
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++|..-|.|++|.||.||||+=.. ++..||.||++-+.
T Consensus 76 ~efe~lnrI~EGtyGiVYRakdk~--t~eIVALKr~kmek 113 (419)
T KOG0663|consen 76 EEFEKLNRIEEGTYGVVYRAKDKK--TDEIVALKRLKMEK 113 (419)
T ss_pred HHHHHHhhcccCcceeEEEeccCC--cceeEEeeeccccc
Confidence 455556889999999999997632 34599999997553
No 84
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=95.70 E-value=0.01 Score=55.03 Aligned_cols=33 Identities=36% Similarity=0.524 Sum_probs=25.2
Q ss_pred CceeecCCCceEEEEEeCCCCc--eeEEEEEEeec
Q 042573 349 ENLIGAGSFGSVYKGILTHDDH--ETLVAVKVLNL 381 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~--~~~vavK~l~~ 381 (388)
...||+|+||.||+|+|.-+.. ...||||+.+.
T Consensus 162 ~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~ 196 (474)
T KOG0194|consen 162 GKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKG 196 (474)
T ss_pred cceeecccccEEEEEEEEecCCceeeeeEEEeecc
Confidence 4789999999999999944311 11389999986
No 85
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=95.68 E-value=0.0082 Score=54.33 Aligned_cols=31 Identities=42% Similarity=0.763 Sum_probs=25.7
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
..+|+|+||.||+|.+++- + .||||++....
T Consensus 47 ~~iG~G~~g~V~~~~~~g~-~--~vavK~~~~~~ 77 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKWRGT-D--VVAVKIISDPD 77 (362)
T ss_pred hhcccCCceeEEEEEeCCc-e--eEEEEEecchh
Confidence 4599999999999999654 3 49999998654
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.62 E-value=0.0057 Score=30.28 Aligned_cols=10 Identities=40% Similarity=0.534 Sum_probs=3.8
Q ss_pred CEEEcccCcc
Q 042573 62 QRLWLKGNKF 71 (388)
Q Consensus 62 ~~L~L~~n~~ 71 (388)
++|+|++|.+
T Consensus 3 ~~Ldls~n~l 12 (22)
T PF00560_consen 3 EYLDLSGNNL 12 (22)
T ss_dssp SEEEETSSEE
T ss_pred cEEECCCCcC
Confidence 3333333333
No 87
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=95.60 E-value=0.0095 Score=54.76 Aligned_cols=39 Identities=33% Similarity=0.509 Sum_probs=28.4
Q ss_pred cCCCcCceeecCCCceEEEEEeC---CCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILT---HDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~---~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.. ..+.+..||||+++..
T Consensus 35 ~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~ 76 (375)
T cd05104 35 NRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPS 76 (375)
T ss_pred HHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCC
Confidence 34555689999999999999741 1113448999999754
No 88
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.58 E-value=0.001 Score=63.31 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=6.6
Q ss_pred cccccceecccCcc
Q 042573 178 SCIRLEQLVMNGNF 191 (388)
Q Consensus 178 ~l~~L~~L~l~~n~ 191 (388)
.++.++.+.+..+.
T Consensus 360 ~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 360 SCPKLTDLSLSYCG 373 (482)
T ss_pred cCCCcchhhhhhhh
Confidence 34445555444444
No 89
>PTZ00036 glycogen synthase kinase; Provisional
Probab=95.55 E-value=0.013 Score=55.05 Aligned_cols=38 Identities=37% Similarity=0.629 Sum_probs=29.6
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.+.|...+.||+|+||.||+|+..+. +..||||++...
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~--~~~vAiK~i~~~ 102 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDT--SEKVAIKKVLQD 102 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCC--CCEEEEEEEecC
Confidence 34566678999999999999988543 238999998653
No 90
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=95.53 E-value=0.011 Score=54.36 Aligned_cols=39 Identities=31% Similarity=0.491 Sum_probs=32.6
Q ss_pred hhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 342 ATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 342 at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
..++|..-..||+|+||.||.++=.+- |...|.|.|++.
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk~T--g~iyAmK~LkKS 177 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKKDT--GEIYAMKILKKS 177 (550)
T ss_pred CcccchhheeeccccceeEEEEEEccC--CcEEeeecccHH
Confidence 567888889999999999999988652 348999999764
No 91
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=95.27 E-value=0.014 Score=51.49 Aligned_cols=46 Identities=37% Similarity=0.578 Sum_probs=38.0
Q ss_pred cCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 334 VSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 334 ~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
++++++..++++|.....||+|+||.||+++..+. +..+|+|.+..
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~--~~~~aik~~~~ 57 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKD--GSLAAVKILDP 57 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCC--CCEEEEEEecc
Confidence 55677788899999999999999999999988543 23899999864
No 92
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=95.23 E-value=0.0098 Score=40.06 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=15.4
Q ss_pred cccccCHHHHHHhhcCCCcC
Q 042573 330 SVLRVSYENLFKATDGFSLE 349 (388)
Q Consensus 330 ~~~~~~~~~l~~at~~f~~~ 349 (388)
.+...||+|...|..+|+.|
T Consensus 53 YIDP~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 53 YIDPHTYEDPNQAVREFAKE 72 (75)
T ss_dssp ---GGGSSSHHHHHHHCSSB
T ss_pred ecCcccccCHHHHHHHHHhh
Confidence 35679999999999999855
No 93
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.16 E-value=0.022 Score=54.13 Aligned_cols=39 Identities=36% Similarity=0.515 Sum_probs=32.5
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
-++|.-..+||+|.||.|+.+++.+- +...|||.|+++.
T Consensus 367 l~~F~~l~vLGkGsFGkV~lae~k~~--~e~yAIK~LKK~~ 405 (694)
T KOG0694|consen 367 LDDFRLLAVLGRGSFGKVLLAELKGT--NEYYAIKVLKKGD 405 (694)
T ss_pred ccceEEEEEeccCcCceEEEEEEcCC--CcEEEEEEeeccc
Confidence 46777788999999999999999653 3489999998864
No 94
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=95.08 E-value=0.017 Score=53.15 Aligned_cols=39 Identities=33% Similarity=0.537 Sum_probs=28.6
Q ss_pred cCCCcCceeecCCCceEEEEEeC---CCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILT---HDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~---~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.. +...+..||||+++..
T Consensus 38 ~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~ 79 (374)
T cd05106 38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKAS 79 (374)
T ss_pred HHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCC
Confidence 45666789999999999999741 1112347999999754
No 95
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=95.06 E-value=0.045 Score=51.33 Aligned_cols=32 Identities=34% Similarity=0.400 Sum_probs=27.3
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecCCC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHG 384 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~ 384 (388)
..||+|.||+|-.-+..++ . .||||.|+.+..
T Consensus 544 ekiGeGqFGEVhLCeveg~-l--kVAVK~Lr~~a~ 575 (807)
T KOG1094|consen 544 EKIGEGQFGEVHLCEVEGP-L--KVAVKILRPDAT 575 (807)
T ss_pred hhhcCcccceeEEEEecCc-e--EEEEeecCcccc
Confidence 4699999999999999765 3 899999998754
No 96
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=95.03 E-value=0.016 Score=50.93 Aligned_cols=47 Identities=23% Similarity=0.503 Sum_probs=38.0
Q ss_pred cCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 334 VSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 334 ~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.++++.+++++|.....||+|+||.||+++.... |..+|+|.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~--~~~~~ik~~~~~ 54 (286)
T cd06638 8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKN--GSKAAVKILDPI 54 (286)
T ss_pred EEeecCCCcccceeeeeeeccCCCcEEEEEEECCC--CceeEEEeeccc
Confidence 45577778889999889999999999999988543 238999988653
No 97
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=94.95 E-value=0.022 Score=52.31 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 336 YENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 336 ~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
..++....++|...+.||+|+||.||+++.... +..+|+|.+..
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~--~~~~aiK~i~~ 78 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKST--RKVYAMKLLSK 78 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCC--CcEEEEEEEEH
Confidence 455666678888889999999999999988543 23899999864
No 98
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=94.93 E-value=0.023 Score=52.15 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=32.4
Q ss_pred HHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 338 NLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 338 ~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
++....++|...+.||+|+||.||+++.... +..+|+|.+..
T Consensus 37 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~--~~~~aiK~~~~ 78 (370)
T cd05621 37 KLQMKAEDYDVVKVIGRGAFGEVQLVRHKSS--QKVYAMKLLSK 78 (370)
T ss_pred hcCCCHHHCeEEEEEEecCCeEEEEEEECCC--CCEEEEEEEEH
Confidence 3444456777778999999999999998653 23899999864
No 99
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=94.90 E-value=0.023 Score=52.71 Aligned_cols=40 Identities=35% Similarity=0.562 Sum_probs=28.8
Q ss_pred hcCCCcCceeecCCCceEEEEEeCC---CCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTH---DDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~---g~~~~~vavK~l~~~ 382 (388)
.+.|...++||+|+||.||+|+..+ ...+..||||+++..
T Consensus 36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~ 78 (400)
T cd05105 36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPT 78 (400)
T ss_pred ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCC
Confidence 3456666889999999999998632 112236999999754
No 100
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=94.85 E-value=0.018 Score=55.03 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=30.5
Q ss_pred HhhcCCCcCceeecCCCceEEEEEeC-CCCceeEEEEEEeecC
Q 042573 341 KATDGFSLENLIGAGSFGSVYKGILT-HDDHETLVAVKVLNLE 382 (388)
Q Consensus 341 ~at~~f~~~~~lg~g~fg~vy~g~l~-~g~~~~~vavK~l~~~ 382 (388)
...+.|.-.+.||+|+||.||+|+.. +| . .||||++...
T Consensus 29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g-~--~vAvK~i~~~ 68 (496)
T PTZ00283 29 EQAKKYWISRVLGSGATGTVLCAKRVSDG-E--PFAVKVVDME 68 (496)
T ss_pred ccCCCEEEEEEEecCCCEEEEEEEEcCCC-C--EEEEEEEecc
Confidence 33456777789999999999999864 34 3 8999998654
No 101
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=94.85 E-value=0.013 Score=53.75 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=25.0
Q ss_pred ceeecCCCceEEEEEe-CCCCceeEEEEEEeecCC
Q 042573 350 NLIGAGSFGSVYKGIL-THDDHETLVAVKVLNLEH 383 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l-~~g~~~~~vavK~l~~~~ 383 (388)
..||+|.||.||||+= ..| ..||+||++-+.
T Consensus 123 ~kIGeGTyg~VYkAr~~~tg---kivALKKvr~d~ 154 (560)
T KOG0600|consen 123 EKIGEGTYGQVYKARDLETG---KIVALKKVRFDN 154 (560)
T ss_pred HHhcCcchhheeEeeecccC---cEEEEEEeeccc
Confidence 5699999999999965 334 489999997654
No 102
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=94.84 E-value=0.027 Score=51.01 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=28.1
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
+|.....||+|+||.||+|+..+. .+..||||++..
T Consensus 31 ~y~~~~~ig~G~~g~Vy~a~~~~~-~~~~vavK~~~~ 66 (340)
T PTZ00426 31 DFNFIRTLGTGSFGRVILATYKNE-DFPPVAIKRFEK 66 (340)
T ss_pred hcEEEEEEeecCCeEEEEEEEECC-CCeEEEEEEEEH
Confidence 455568899999999999987543 224899999864
No 103
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=94.82 E-value=0.025 Score=52.39 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=28.8
Q ss_pred cCCCcCceeecCCCceEEEEEeCCC---CceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHD---DHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g---~~~~~vavK~l~~~ 382 (388)
+++...+.||+|+||.||+|+..+. ..+..||||+++..
T Consensus 37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~ 78 (401)
T cd05107 37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKST 78 (401)
T ss_pred HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCC
Confidence 3455558899999999999997531 12247999999764
No 104
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=94.80 E-value=0.02 Score=54.81 Aligned_cols=34 Identities=38% Similarity=0.528 Sum_probs=27.9
Q ss_pred ceeecCCCceEEEEEe--CCCCceeEEEEEEeecCCC
Q 042573 350 NLIGAGSFGSVYKGIL--THDDHETLVAVKVLNLEHG 384 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l--~~g~~~~~vavK~l~~~~~ 384 (388)
++||+|.||+|++|.+ ++| +-..||||-|+.+..
T Consensus 116 e~LG~GsFgvV~rg~Wt~psg-k~V~VAVKclr~d~l 151 (1039)
T KOG0199|consen 116 ELLGEGSFGVVKRGTWTQPSG-KHVNVAVKCLRDDSL 151 (1039)
T ss_pred HHhcCcceeeEeeccccCCCC-cEEeEEEEeccCCcc
Confidence 5799999999999988 556 446899999987653
No 105
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=94.79 E-value=0.018 Score=52.86 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=30.2
Q ss_pred hhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 342 ATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 342 at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
..++|...+.||+|+||.||+++-... |..||||.+..
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~--~~~~aiK~~~~ 78 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHKSS--KQVYAMKLLSK 78 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEECCC--CCEEEEEEEEH
Confidence 445677778999999999999988543 23899999864
No 106
>PHA02988 hypothetical protein; Provisional
Probab=94.75 E-value=0.04 Score=48.42 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=32.0
Q ss_pred ccccCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 331 VLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 331 ~~~~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
...++++++.. .....||+|++|.||+|++.+. .||||+++...
T Consensus 12 ~~~i~~~~i~~-----~~~~~i~~g~~~~v~~~~~~~~----~vavK~~~~~~ 55 (283)
T PHA02988 12 IKCIESDDIDK-----YTSVLIKENDQNSIYKGIFNNK----EVIIRTFKKFH 55 (283)
T ss_pred ceecCHHHcCC-----CCCeEEeeCCceEEEEEEECCE----EEEEEeccccc
Confidence 34456666532 3347899999999999999433 79999997653
No 107
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.68 E-value=0.0027 Score=60.44 Aligned_cols=31 Identities=19% Similarity=0.064 Sum_probs=16.2
Q ss_pred CcCCCCCCEEECCCCcCcccc-chhhhcCCCC
Q 042573 200 FSSLRGIEKLDLSRNNLSGRI-PKYFENFLFL 230 (388)
Q Consensus 200 ~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L 230 (388)
...++.++.+.+..+...... ...+.+++.|
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 345666777777666633222 2344445544
No 108
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=94.61 E-value=0.034 Score=50.06 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=28.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+..+. |..||||.++..
T Consensus 18 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~~aiK~~~~~ 54 (329)
T PTZ00263 18 SDFEMGETLGTGSFGRVRIAKHKGT--GEYYAIKCLKKR 54 (329)
T ss_pred hheEEEEEEEecCCeEEEEEEECCC--CCEEEEEEEEHH
Confidence 4456668899999999999998543 238999998643
No 109
>smart00090 RIO RIO-like kinase.
Probab=94.31 E-value=0.055 Score=46.11 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=27.2
Q ss_pred CCcCceeecCCCceEEEEE--eCCCCceeEEEEEEeecC
Q 042573 346 FSLENLIGAGSFGSVYKGI--LTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~--l~~g~~~~~vavK~l~~~ 382 (388)
|.-...||+|+||.||+|+ ..+| . .||||..+..
T Consensus 30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g-~--~vaiK~~~~~ 65 (237)
T smart00090 30 SAIGGCISTGKEANVYHALDFDGSG-K--ERAVKIYRTG 65 (237)
T ss_pred HHhCCeeccCcceeEEEEEecCCCC-c--EEEEEEEEcC
Confidence 4445789999999999998 5555 3 8999998754
No 110
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=94.30 E-value=0.018 Score=54.34 Aligned_cols=39 Identities=41% Similarity=0.649 Sum_probs=29.6
Q ss_pred CCCcCceeecCCCceEEEEEeCC---CCceeEEEEEEeecCCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTH---DDHETLVAVKVLNLEHG 384 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~---g~~~~~vavK~l~~~~~ 384 (388)
.....++||.|.||.||+|+|.+ | ....||||.-+.+.+
T Consensus 390 ~Itl~r~iG~GqFGdVy~gvYt~~~kg-e~iaVAvKtCK~d~t 431 (974)
T KOG4257|consen 390 LITLKRLIGEGQFGDVYKGVYTDPEKG-ERIAVAVKTCKTDCT 431 (974)
T ss_pred hccHHHhhcCCcccceeeeEecccccC-cceeeeeehhccCCC
Confidence 34445789999999999999943 3 445899998877544
No 111
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=94.29 E-value=0.041 Score=50.11 Aligned_cols=32 Identities=41% Similarity=0.464 Sum_probs=25.4
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.+.||+|+||.||+|+.... |..||||.+...
T Consensus 79 ~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~ 110 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIHRPT--GRLYALKVIYGN 110 (353)
T ss_pred hhhccCCCCeEEEEEEECCC--CCEEEEEEEecC
Confidence 36799999999999987532 238999998654
No 112
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=94.08 E-value=0.051 Score=50.88 Aligned_cols=31 Identities=35% Similarity=0.362 Sum_probs=27.0
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++-||.|++|.||+|++.+| + .||||..+.+
T Consensus 122 ~~plasaSigQVh~A~l~~G-~--~VaVKv~rp~ 152 (437)
T TIGR01982 122 EKPLAAASIAQVHRARLVDG-K--EVAVKVLRPG 152 (437)
T ss_pred CcceeeeehhheEEEEecCC-C--EEEEEeeCCC
Confidence 45799999999999999887 4 7999998765
No 113
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.95 E-value=0.0027 Score=56.61 Aligned_cols=63 Identities=17% Similarity=0.073 Sum_probs=38.9
Q ss_pred hhccccccEEEeecCc-eeecCcccc-cCCCCCCEEECcCC-ccccCCCc-cccCCCCCCEEEcccCc
Q 042573 7 GNLSTRLGKLSVAENQ-LFGNIPSGL-TNLVNLELLDLGDN-QFTGRIPG-SIGDLQKLQRLWLKGNK 70 (388)
Q Consensus 7 ~~l~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~n-~~~~~~~~-~~~~l~~L~~L~L~~n~ 70 (388)
.++|+ +++|.+.++. +++..-..+ ..++.|+.|++..| .++...-. ...++++|++|+++++.
T Consensus 161 ~~Cpn-IehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 161 SNCPN-IEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred hhCCc-hhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 35665 8888887775 333222223 56788888888884 33322211 23468888888888875
No 114
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.94 E-value=0.00023 Score=66.57 Aligned_cols=180 Identities=24% Similarity=0.230 Sum_probs=92.6
Q ss_pred CCEEEcccCcccccC----CcCccCCCCCCEEeccCCccccc----CCcCCCCC-CCCCEEeCCCCcCCCcC----Chhh
Q 042573 61 LQRLWLKGNKFWGEI----PSSIGNLTSLAILDFAENMLEGS----IPSSLGKC-QNLILLDLSKNNLSGTI----PTEV 127 (388)
Q Consensus 61 L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~~~~~~----~~~~ 127 (388)
+..|.|.+|.+.... ...+...+.|+.|+++.|.+... +-..+... ..|++|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556666666554322 22344556666666666666521 11122221 34555555555554322 1223
Q ss_pred hccCcccceEEccCccCcC----CCCcccc----cCCCCCEEEcccCcccccC----Chhhccccc-cceecccCccccc
Q 042573 128 IGLPSFSIYLNLSQNQLNG----PLPSNFG----ILKNLGVISLSENKLSGEI----PSSLGSCIR-LEQLVMNGNFFRG 194 (388)
Q Consensus 128 ~~~~~l~~~L~l~~n~~~~----~~~~~~~----~l~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~l~~n~l~~ 194 (388)
.....+ +.++++.|.+.. ..+..+. ...++++|.+++|.++... ...+...++ +..+++..|.+.+
T Consensus 169 ~~~~~l-~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EKNEHL-TELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hcccch-hHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 333333 555666665531 1112222 3556777777777765221 122333444 5667777776653
Q ss_pred c----CCccCcCC-CCCCEEECCCCcCccccch----hhhcCCCCcEEEcccccCc
Q 042573 195 N----IPSSFSSL-RGIEKLDLSRNNLSGRIPK----YFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 195 ~----~~~~~~~l-~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~l~l~~n~~~ 241 (388)
. ....+..+ +.++.++++.|.++..... .+..++.++.+.+++|++.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3 22233334 5667788888877755333 3445566777777777765
No 115
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=93.83 E-value=0.044 Score=50.74 Aligned_cols=33 Identities=36% Similarity=0.628 Sum_probs=26.8
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.+||+|.||+||-|.-+. +|+-||||.+.+.+
T Consensus 569 devLGSGQFG~VYgg~hRk--tGrdVAvKvIdKlr 601 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRK--TGRDVAVKVIDKLR 601 (888)
T ss_pred HhhccCCcceeeecceecc--cCceeeeeeeeccc
Confidence 4689999999999998754 23479999998765
No 116
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=93.80 E-value=0.0094 Score=50.55 Aligned_cols=31 Identities=45% Similarity=0.654 Sum_probs=25.2
Q ss_pred ceeecCCCceEEEEE-eCCCCceeEEEEEEeecCC
Q 042573 350 NLIGAGSFGSVYKGI-LTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~-l~~g~~~~~vavK~l~~~~ 383 (388)
.+||+|.||.|||+. +.+| . .||.|+++-+.
T Consensus 25 ~~IG~GsFg~vykv~~~~~g-~--l~a~K~i~f~~ 56 (375)
T KOG0591|consen 25 KKIGRGSFGEVYKVQCLLDG-K--LVALKKIQFGM 56 (375)
T ss_pred HHHcCCcchheEEeeeccCc-c--hhhhhhcchhh
Confidence 679999999999994 5666 3 89999997553
No 117
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=93.74 E-value=0.058 Score=49.71 Aligned_cols=42 Identities=29% Similarity=0.405 Sum_probs=32.6
Q ss_pred cccCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 332 LRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 332 ~~~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
..+..+++... +.||+|-||+||.|.+.+- + .||||.++.+.
T Consensus 201 wei~r~~l~l~-------~~LG~G~FG~V~~g~~~~~-~--~vavk~ik~~~ 242 (468)
T KOG0197|consen 201 WEIPREELKLI-------RELGSGQFGEVWLGKWNGS-T--KVAVKTIKEGS 242 (468)
T ss_pred eeecHHHHHHH-------HHhcCCccceEEEEEEcCC-C--cccceEEeccc
Confidence 34555565554 6799999999999999665 3 69999998753
No 118
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=93.66 E-value=0.076 Score=48.46 Aligned_cols=37 Identities=30% Similarity=0.232 Sum_probs=29.1
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.|.....||+|+||.||+++-... |..||||++...
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~ 57 (359)
T cd07876 21 KRYQQLKPIGSGAQGIVCAAFDTVL--GINVAVKKLSRP 57 (359)
T ss_pred hceEEEEEeecCCCEEEEEEEEcCC--CceeEEEEeccc
Confidence 5666678999999999999986432 348999999653
No 119
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.48 E-value=0.00045 Score=64.68 Aligned_cols=108 Identities=25% Similarity=0.212 Sum_probs=68.9
Q ss_pred ccEEEeecCceeecC----cccccCCCCCCEEECcCCccccCCC----ccccCC-CCCCEEEcccCccccc----CCcCc
Q 042573 13 LGKLSVAENQLFGNI----PSGLTNLVNLELLDLGDNQFTGRIP----GSIGDL-QKLQRLWLKGNKFWGE----IPSSI 79 (388)
Q Consensus 13 L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l-~~L~~L~L~~n~~~~~----~~~~~ 79 (388)
+..|.|.+|.+.... -..+...+.|+.|++++|.+...-. ..+... ..|++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 677888888877542 3446677889999999998862211 112222 4567778877776633 33455
Q ss_pred cCCCCCCEEeccCCcccc----cCCcC----CCCCCCCCEEeCCCCcCC
Q 042573 80 GNLTSLAILDFAENMLEG----SIPSS----LGKCQNLILLDLSKNNLS 120 (388)
Q Consensus 80 ~~l~~L~~L~l~~n~l~~----~~~~~----~~~l~~L~~L~l~~n~~~ 120 (388)
.....++.++++.|.+.. .++.. +....++++|.+.+|.++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 667888888888887641 12222 334667777888777765
No 120
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.47 E-value=0.0018 Score=53.15 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=68.8
Q ss_pred ccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCC
Q 042573 29 SGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQN 108 (388)
Q Consensus 29 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 108 (388)
..+..+...+.||++.|++. ..-..|+-+..|..|+++.|.+. ..|..+.++..+..+++..|... ..|.++...++
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34566778888888888876 45556777778888888888876 77788888888888888877777 67888888888
Q ss_pred CCEEeCCCCcCC
Q 042573 109 LILLDLSKNNLS 120 (388)
Q Consensus 109 L~~L~l~~n~~~ 120 (388)
++++++..+.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888877643
No 121
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=93.45 E-value=0.046 Score=31.27 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=13.1
Q ss_pred ccceeehhhhHHHHHHHHHHHHHHHHhhcc
Q 042573 286 RSLKLIIPVVTVILLVTGMSCFIITSWQSK 315 (388)
Q Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (388)
....+.++++..++++++++.++++.|+||
T Consensus 9 ~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 9 NTVAIAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred ceEEEEEEEEechHHHHHHHHHHhheEEec
Confidence 344555555444434444443444444443
No 122
>PHA03209 serine/threonine kinase US3; Provisional
Probab=93.40 E-value=0.1 Score=47.64 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=28.9
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
..+|...+.||+|+||.||+|+..+. +..||+|....
T Consensus 65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~--~~~valK~~~~ 101 (357)
T PHA03209 65 SLGYTVIKTLTPGSEGRVFVATKPGQ--PDPVVLKIGQK 101 (357)
T ss_pred hcCcEEEEEecCCCCeEEEEEEECCC--CceEEEEeCCc
Confidence 35677778999999999999998543 23899997543
No 123
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=93.27 E-value=0.11 Score=47.55 Aligned_cols=38 Identities=26% Similarity=0.208 Sum_probs=29.2
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.++|...+.||+|+||.||++.-... +..||||++...
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~ 60 (364)
T cd07875 23 LKRYQNLKPIGSGAQGIVCAAYDAIL--ERNVAIKKLSRP 60 (364)
T ss_pred hcceeEEEEeecCCCeEEEEEEECCC--CcEEEEEEeCcc
Confidence 35677778999999999999976432 237999999753
No 124
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=93.22 E-value=0.1 Score=46.64 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=27.5
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
|...+.||+|+||.||+|+..++.. .||+|++...
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~--~valK~~~~~ 61 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNE--VVAIKKMSYS 61 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCc--EEEEEEEecC
Confidence 4556789999999999998754323 8999998754
No 125
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=93.08 E-value=0.16 Score=49.12 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=22.6
Q ss_pred HHhhcCCCcCceeecCCCceEEEEEeCCC
Q 042573 340 FKATDGFSLENLIGAGSFGSVYKGILTHD 368 (388)
Q Consensus 340 ~~at~~f~~~~~lg~g~fg~vy~g~l~~g 368 (388)
......+...+.||+|+||.||+|++.+.
T Consensus 329 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~ 357 (535)
T PRK09605 329 EEVKRRKIPDHLIGKGAEADIKKGEYLGR 357 (535)
T ss_pred cccccccCccceeccCCcEEEEEEeecCc
Confidence 33344456678999999999999999765
No 126
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=93.08 E-value=0.03 Score=47.19 Aligned_cols=43 Identities=30% Similarity=0.389 Sum_probs=30.5
Q ss_pred ccCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCCC
Q 042573 333 RVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHG 384 (388)
Q Consensus 333 ~~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~ 384 (388)
.|+.++|+.- ..||.|.||+|+|=.-... |+..||||++....
T Consensus 60 ~F~~~~Lqdl-------g~iG~G~fG~V~KM~hk~s--g~~mAVKrIr~~n~ 102 (361)
T KOG1006|consen 60 TFTSDNLQDL-------GEIGNGAFGTVNKMLHKPS--GKLMAVKRIRSNNI 102 (361)
T ss_pred ccccchHHHH-------HHhcCCcchhhhhhhcCcc--CcEEEEEEeeeccc
Confidence 4555555543 4699999999999866432 34899999986543
No 127
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=92.99 E-value=0.025 Score=42.30 Aligned_cols=32 Identities=25% Similarity=0.213 Sum_probs=26.8
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.+=||.|+.|.||+|+|.+| + .||||..+.+.
T Consensus 16 ~~PlasASiaQVh~a~l~~g-~--~VaVKV~rP~i 47 (119)
T PF03109_consen 16 PEPLASASIAQVHRARLKDG-E--EVAVKVQRPGI 47 (119)
T ss_pred cchhhheehhhheeeeeccc-c--hhhhhhcchHH
Confidence 35699999999999999887 4 79999887653
No 128
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=92.97 E-value=0.1 Score=46.36 Aligned_cols=39 Identities=33% Similarity=0.495 Sum_probs=29.1
Q ss_pred cCCCcCceeecCCCceEEEEEeC---CCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILT---HDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~---~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.- ....+..||||+++..
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~ 76 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPT 76 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCcc
Confidence 46777789999999999999751 1113447999988754
No 129
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.88 E-value=0.002 Score=52.92 Aligned_cols=88 Identities=19% Similarity=0.230 Sum_probs=56.0
Q ss_pred cccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcc
Q 042573 54 SIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSF 133 (388)
Q Consensus 54 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l 133 (388)
.+..+...+.||++.|++. ..-..|+.++.|..|+++.|.+. ..|..+..+..++.+++..|..+ ..|..+...+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3445566677777777654 33344666666777777777666 45666666666666666666655 566666666666
Q ss_pred cceEEccCccCc
Q 042573 134 SIYLNLSQNQLN 145 (388)
Q Consensus 134 ~~~L~l~~n~~~ 145 (388)
+++++.++.+.
T Consensus 114 -k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 -KKNEQKKTEFF 124 (326)
T ss_pred -chhhhccCcch
Confidence 66666666654
No 130
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=92.68 E-value=0.032 Score=56.72 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=28.0
Q ss_pred cCCCcCceeecCCCceEEEEEe-CCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGIL-THDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l-~~g~~~~~vavK~l~~~ 382 (388)
.+|.+-.+||+||||.|||++= -|| +.-||||+.-.
T Consensus 479 ~DFEEL~lLGkGGFG~VvkVRNKlDG---r~YAIKKIpl~ 515 (1351)
T KOG1035|consen 479 NDFEELELLGKGGFGSVVKVRNKLDG---REYAIKKIPLK 515 (1351)
T ss_pred hhhHHHHHhcCCCCceEEEEeecccc---hhhhhhhccCc
Confidence 4676678899999999999964 344 37999998643
No 131
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.47 E-value=0.075 Score=24.29 Aligned_cols=7 Identities=29% Similarity=0.582 Sum_probs=2.5
Q ss_pred EEEeecC
Q 042573 15 KLSVAEN 21 (388)
Q Consensus 15 ~L~l~~~ 21 (388)
+|++++|
T Consensus 5 ~L~l~~n 11 (17)
T PF13504_consen 5 TLDLSNN 11 (17)
T ss_dssp EEEETSS
T ss_pred EEECCCC
Confidence 3333333
No 132
>PHA03207 serine/threonine kinase US3; Provisional
Probab=92.15 E-value=0.16 Score=47.00 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=29.1
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.|.....||+|+||.||+++..+...+..||||.+...
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~ 130 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG 130 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc
Confidence 45556789999999999998754334458999998654
No 133
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=92.12 E-value=0.21 Score=44.53 Aligned_cols=35 Identities=40% Similarity=0.572 Sum_probs=26.8
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
|...+.||+|+||.||+|+.... |..||+|++...
T Consensus 23 ~~~~~~lg~g~~g~v~~~~~~~~--~~~v~ik~~~~~ 57 (313)
T cd06633 23 FVGLHEIGHGSFGAVYFATNSHT--NEVVAVKKMSYS 57 (313)
T ss_pred hhcceeeccCCCeEEEEEEECCC--CcEEEEEEEecc
Confidence 34446799999999999987443 238999998754
No 134
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=91.98 E-value=0.19 Score=44.48 Aligned_cols=36 Identities=33% Similarity=0.505 Sum_probs=28.2
Q ss_pred cCCCcCceeecCCCceEEEEEeC-CCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILT-HDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~-~g~~~~~vavK~l~~~ 382 (388)
..|...+.||+|+||.||+|+-. +| + .||+|.+...
T Consensus 19 ~~y~~~~~lg~g~~g~v~~~~~~~~~-~--~vaiK~~~~~ 55 (297)
T cd06656 19 KKYTRFEKIGQGASGTVYTAIDIATG-Q--EVAIKQMNLQ 55 (297)
T ss_pred hhceeeeeeccCCCeEEEEEEECCCC-C--EEEEEEEecC
Confidence 34666688999999999999863 34 3 8999998654
No 135
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.72 E-value=0.18 Score=25.92 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=13.4
Q ss_pred CCCCEEECCCCcCccccchhh
Q 042573 204 RGIEKLDLSRNNLSGRIPKYF 224 (388)
Q Consensus 204 ~~L~~L~l~~n~l~~~~~~~l 224 (388)
++|++|+|++|++....+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 567777777777775544443
No 136
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.72 E-value=0.18 Score=25.92 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=13.4
Q ss_pred CCCCEEECCCCcCccccchhh
Q 042573 204 RGIEKLDLSRNNLSGRIPKYF 224 (388)
Q Consensus 204 ~~L~~L~l~~n~l~~~~~~~l 224 (388)
++|++|+|++|++....+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 567777777777775544443
No 137
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=91.45 E-value=0.19 Score=48.07 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=28.3
Q ss_pred CCCcCceeecCCCceEEEEEeCC-CCceeEEEEEEeecC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTH-DDHETLVAVKVLNLE 382 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~-g~~~~~vavK~l~~~ 382 (388)
+|+. .-+|+|++|.||+|++.+ | + .||||.++++
T Consensus 121 ~fd~-~PlasaSiaQVh~A~l~~~G-~--~VAVKV~rP~ 155 (537)
T PRK04750 121 DFDI-KPLASASIAQVHFARLKDNG-R--EVVVKVLRPD 155 (537)
T ss_pred hcCh-hhhcCCCccEEEEEEECCCC-C--EEEEEEeCcc
Confidence 4554 579999999999999987 6 4 7999999865
No 138
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=91.41 E-value=0.21 Score=47.11 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=27.7
Q ss_pred CCcCceeecCCCceEEEEEe-CCCCceeEEEEEEeecC
Q 042573 346 FSLENLIGAGSFGSVYKGIL-THDDHETLVAVKVLNLE 382 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l-~~g~~~~~vavK~l~~~ 382 (388)
+...++||+|||..||+++- ..| + .||+|.+.+.
T Consensus 20 Y~~g~~LGkGgFA~cYe~~~~~tg-e--~~A~KvVpk~ 54 (592)
T KOG0575|consen 20 YKRGRFLGKGGFARCYEARDLDTG-E--VVAVKVVPKK 54 (592)
T ss_pred eeeeeeeccCcceEEEEEEEcCCC-c--EEEEEEeehH
Confidence 44568999999999999987 545 4 8999998664
No 139
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=91.28 E-value=0.1 Score=45.96 Aligned_cols=39 Identities=33% Similarity=0.564 Sum_probs=32.0
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.++|...++||+|+||.||..+=.+ +++..|.|.|++..
T Consensus 24 ~~dF~~lkviGkG~fGkV~~Vrk~d--t~kiYAmKvl~K~~ 62 (357)
T KOG0598|consen 24 PDDFEILKVIGKGSFGKVFQVRKKD--TGKIYAMKVLKKKK 62 (357)
T ss_pred hhheeeeeeeeccCCceEEEEEEcc--cCceeehhhhhhhH
Confidence 4678888999999999999997753 44589999998754
No 140
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.21 E-value=0.18 Score=25.87 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=6.8
Q ss_pred CCCCEEECcCCccc
Q 042573 35 VNLELLDLGDNQFT 48 (388)
Q Consensus 35 ~~L~~L~l~~n~~~ 48 (388)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555444
No 141
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.21 E-value=0.18 Score=25.87 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=6.8
Q ss_pred CCCCEEECcCCccc
Q 042573 35 VNLELLDLGDNQFT 48 (388)
Q Consensus 35 ~~L~~L~l~~n~~~ 48 (388)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555444
No 142
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=91.07 E-value=0.097 Score=51.09 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=25.0
Q ss_pred cCHHHHHHhhcCCCcCceeecCCCceEEEEEe
Q 042573 334 VSYENLFKATDGFSLENLIGAGSFGSVYKGIL 365 (388)
Q Consensus 334 ~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l 365 (388)
+-.+|.+.+.+ ....+.+|+|+||.||-|.=
T Consensus 985 yv~deWe~~r~-it~~relg~gsfg~Vy~g~~ 1015 (1025)
T KOG4258|consen 985 YVPDEWEVSRE-ITLGRELGQGSFGMVYEGNA 1015 (1025)
T ss_pred CChhHHHHHHH-HhhhhhhccCccceEEEecC
Confidence 45567777665 77789999999999999965
No 143
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=91.07 E-value=0.22 Score=47.25 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=25.3
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
...||+|.||.|-|+.=. + ++..||||.++..
T Consensus 191 ~e~LGkGtFGQVvk~~d~-~-T~e~VAIKIiKN~ 222 (586)
T KOG0667|consen 191 LEVLGKGSFGQVVKAYDH-K-TGEIVAIKIIKNK 222 (586)
T ss_pred EEEecccccceeEEEEec-C-CCcEEEEEeeccC
Confidence 467999999999999543 2 4559999999764
No 144
>PHA03212 serine/threonine kinase US3; Provisional
Probab=91.03 E-value=0.22 Score=46.01 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=27.7
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
++|...+.||+|+||.||+++-... +..||+|+.+.
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~--~~~vaiK~~~~ 127 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKT--CEHVVIKAGQR 127 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCC--CCEEEEechhh
Confidence 4566678899999999999976432 33899997653
No 145
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=91.02 E-value=0.19 Score=44.44 Aligned_cols=31 Identities=39% Similarity=0.438 Sum_probs=24.4
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
..||+|+||.||+|+.... +..||||.+...
T Consensus 27 ~~ig~g~~g~v~~~~~~~~--~~~v~iK~~~~~ 57 (297)
T cd06659 27 IKIGEGSTGIVCIAREKHS--GRQVAVKMMDLR 57 (297)
T ss_pred hhcCCCCceeEEEEEEcCC--CCEEEEEEEEec
Confidence 5699999999999987432 238999998653
No 146
>PHA03211 serine/threonine kinase US3; Provisional
Probab=90.98 E-value=0.23 Score=47.00 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.9
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEe
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVL 379 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l 379 (388)
..+|.....||+|+||.||+|+.... +..||||+.
T Consensus 168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~--~~~vavK~~ 202 (461)
T PHA03211 168 GLGFAIHRALTPGSEGCVFESSHPDY--PQRVVVKAG 202 (461)
T ss_pred cCCeEEEEEEccCCCeEEEEEEECCC--CCEEEEecc
Confidence 34677778999999999999988653 238999964
No 147
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=90.69 E-value=0.11 Score=49.37 Aligned_cols=45 Identities=24% Similarity=0.485 Sum_probs=34.1
Q ss_pred HHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 337 ENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 337 ~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++.+...-++.-.+.||-|.+|.||-|++..= ...||||.|+++.
T Consensus 260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKky--slTvAVKtLKEDt 304 (1157)
T KOG4278|consen 260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKY--SLTVAVKTLKEDT 304 (1157)
T ss_pred chhhccchheeeeeccCCCcccceeeeeeecc--ceeeehhhhhhcc
Confidence 44455455566668899999999999999542 2479999998764
No 148
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=90.65 E-value=0.38 Score=42.51 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=27.9
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.|...+.||+|+||.||+|+-... +..||+|.+....
T Consensus 21 ~y~~~~~lg~g~~~~v~~~~~~~~--~~~v~ik~~~~~~ 57 (296)
T cd06654 21 KYTRFEKIGQGASGTVYTAMDVAT--GQEVAIRQMNLQQ 57 (296)
T ss_pred ceeeEEEecCCCCeEEEEEEECCC--CcEEEEEEEecCC
Confidence 455567899999999999986332 2389999987543
No 149
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=90.32 E-value=0.33 Score=44.46 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=26.7
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.++||+|.||.||+++-... |..+|+|.+.+..
T Consensus 40 ~~~lG~G~Fg~v~~~~~~~t--g~~~A~K~i~k~~ 72 (382)
T KOG0032|consen 40 GRELGRGQFGVVYLCREKST--GKEVACKVIPKRK 72 (382)
T ss_pred hhhhCCCCceEEEEEEecCC--CceeEEEEeehhh
Confidence 37899999999999988652 2389999997654
No 150
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=90.30 E-value=0.38 Score=42.41 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=27.3
Q ss_pred cCCCcCceeecCCCceEEEEEeC-CCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILT-HDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~-~g~~~~~vavK~l~~~ 382 (388)
+.|...+.||+|+||.||+|.-. ++ . .||+|.+...
T Consensus 19 ~~~~~~~~lg~g~~g~v~~~~~~~~~-~--~v~iK~~~~~ 55 (293)
T cd06647 19 KKYTRFEKIGQGASGTVYTAIDVATG-Q--EVAIKQMNLQ 55 (293)
T ss_pred hhceeeeEecCCCCeEEEEEEEcCCC-C--EEEEEEeccc
Confidence 34555678999999999999763 33 3 7999998643
No 151
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=90.30 E-value=0.18 Score=56.09 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=33.4
Q ss_pred ECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC
Q 042573 210 DLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK 247 (388)
Q Consensus 210 ~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~ 247 (388)
||++|+|+.+.+..|..+++|+.|+|++|+|.|+|...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 57889999888888889999999999999999998864
No 152
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=89.72 E-value=0.39 Score=42.08 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=31.5
Q ss_pred HhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 341 KATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 341 ~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.++++|...+.+|+|+||.||+|..... +..||+|++....
T Consensus 16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~--~~~~~iK~~~~~~ 56 (286)
T cd06614 16 DPRELYKNLEKIGEGASGEVYKATDRAT--GKEVAIKKMRLRK 56 (286)
T ss_pred CccccchHhHhccCCCCeEEEEEEEccC--CcEEEEEEEecCc
Confidence 3556677778899999999999998632 2389999987543
No 153
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.70 E-value=0.031 Score=45.11 Aligned_cols=80 Identities=24% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCEEECcCCccccCCCccccCCCCCCEEEcccCcccccC-CcCcc-CCCCCCEEeccCCc-ccccCCcCCCCCCCCCEEe
Q 042573 37 LELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEI-PSSIG-NLTSLAILDFAENM-LEGSIPSSLGKCQNLILLD 113 (388)
Q Consensus 37 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 113 (388)
++.++-+++.|..+--+.+.+++.|+.|.+.+|.-.+.- -+.++ -.++|+.|+++.|. |+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 445555555554332333444455555555544321000 00011 23456666666543 3322223345556666665
Q ss_pred CCC
Q 042573 114 LSK 116 (388)
Q Consensus 114 l~~ 116 (388)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 154
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=89.61 E-value=0.17 Score=51.25 Aligned_cols=40 Identities=35% Similarity=0.557 Sum_probs=30.4
Q ss_pred HHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEee
Q 042573 338 NLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLN 380 (388)
Q Consensus 338 ~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~ 380 (388)
+.+.....|.-..++|+|++|.||+|+=.+| . .||+|.=+
T Consensus 692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~-~--~~alK~e~ 731 (974)
T KOG1166|consen 692 EFEVGGEKFCISKEIGEGSYGSVYVATHSNG-K--LVALKVEK 731 (974)
T ss_pred eeeecceeEEEEeeeccccceEEEEeecCCC-c--EEEEEeec
Confidence 3334445566668899999999999998776 4 89999644
No 155
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=89.32 E-value=0.4 Score=42.33 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=27.8
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.|...+.||.|+||.||+|+-... |..||||.+....
T Consensus 20 ~y~~~~~lg~g~~g~vy~~~~~~~--~~~v~iK~~~~~~ 56 (296)
T cd06655 20 KYTRYEKIGQGASGTVFTAIDVAT--GQEVAIKQINLQK 56 (296)
T ss_pred eEEEEEEEecCCCeEEEEEEEcCC--CcEEEEEEEeccc
Confidence 455567899999999999975332 2389999986543
No 156
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=89.26 E-value=0.1 Score=51.02 Aligned_cols=36 Identities=39% Similarity=0.459 Sum_probs=28.0
Q ss_pred cCCCcCceeecCCCc-eEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFG-SVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg-~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.-|+.+.++|.|.-| .||+|++.+. .|||||+-.+.
T Consensus 509 ~~~~~~eilG~Gs~Gt~Vf~G~ye~R----~VAVKrll~e~ 545 (903)
T KOG1027|consen 509 LFFSPKEILGYGSNGTVVFRGVYEGR----EVAVKRLLEEF 545 (903)
T ss_pred eeeccHHHcccCCCCcEEEEEeeCCc----eehHHHHhhHh
Confidence 356777889999886 6899999544 89999996543
No 157
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=89.19 E-value=0.79 Score=41.25 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=25.2
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCC---ceeEEEEEEeec
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDD---HETLVAVKVLNL 381 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~---~~~~vavK~l~~ 381 (388)
...|...-++-+|.||.||+|.+++.+ +.+.|-||.++.
T Consensus 283 r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~ 324 (563)
T KOG1024|consen 283 RCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQ 324 (563)
T ss_pred hhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHh
Confidence 334555567899999999999886543 112455665543
No 158
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=89.07 E-value=0.32 Score=43.14 Aligned_cols=38 Identities=34% Similarity=0.407 Sum_probs=27.4
Q ss_pred CCCcCceeecCCCceEEEEEeCCCC-----ceeEEEEEEeecC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDD-----HETLVAVKVLNLE 382 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~-----~~~~vavK~l~~~ 382 (388)
+|.-.+.||+|+||.||+++..+.. .+..+|+|.++..
T Consensus 19 ~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~ 61 (307)
T cd05098 19 RLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSD 61 (307)
T ss_pred HeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCC
Confidence 4555678999999999999763210 1236999999764
No 159
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=89.03 E-value=0.41 Score=41.97 Aligned_cols=34 Identities=32% Similarity=0.266 Sum_probs=25.8
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
+..-+.||+|++|.||+|+-... +..||+|+++.
T Consensus 21 ~~~~~~lg~g~~g~v~~~~~~~~--~~~~~iK~~~~ 54 (285)
T cd06648 21 LDNFVKIGEGSTGIVCIATDKST--GRQVAVKKMDL 54 (285)
T ss_pred hhcceEeccCCCeEEEEEEECCC--CCEEEEEEEec
Confidence 33447899999999999986432 23899998864
No 160
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=88.97 E-value=0.14 Score=46.03 Aligned_cols=37 Identities=35% Similarity=0.537 Sum_probs=29.2
Q ss_pred cCCCcCceeecCCCceEEEEEeCC--CCceeEEEEEEeec
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTH--DDHETLVAVKVLNL 381 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~--g~~~~~vavK~l~~ 381 (388)
+.|..++.||+|.|++||++++.. + ....||+|.+..
T Consensus 36 ~~~~~v~kigeGsFssv~~a~~~~~~~-~~~~valk~i~~ 74 (418)
T KOG1167|consen 36 NAYKVVNKIGEGSFSSVYKATDIEQDT-KRRYVALKAIYR 74 (418)
T ss_pred hhhhhhccccccchhhhhhhhHhhhcc-ccceEeeeeccc
Confidence 456778899999999999999854 1 224899999854
No 161
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.79 E-value=0.14 Score=25.73 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=8.4
Q ss_pred CCCCEEECCCCcCcccc
Q 042573 204 RGIEKLDLSRNNLSGRI 220 (388)
Q Consensus 204 ~~L~~L~l~~n~l~~~~ 220 (388)
++|++|+|++|+|++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45666666666655443
No 162
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=88.78 E-value=0.38 Score=42.44 Aligned_cols=30 Identities=40% Similarity=0.479 Sum_probs=23.9
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
..||+|+||.||+|+.... |..||||++..
T Consensus 26 ~~lg~g~~g~v~~~~~~~~--~~~v~iK~~~~ 55 (292)
T cd06657 26 IKIGEGSTGIVCIATVKSS--GKLVAVKKMDL 55 (292)
T ss_pred HHcCCCCCeEEEEEEEcCC--CeEEEEEEecc
Confidence 4699999999999988432 23899998854
No 163
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=88.73 E-value=0.4 Score=42.23 Aligned_cols=31 Identities=39% Similarity=0.419 Sum_probs=24.2
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
..||+|+||.||++..... +..||||++...
T Consensus 28 ~~lg~g~~g~v~~~~~~~~--~~~vaiK~~~~~ 58 (292)
T cd06658 28 IKIGEGSTGIVCIATEKHT--GKQVAVKKMDLR 58 (292)
T ss_pred hcccCCCCeEEEEEEECCC--CCEEEEEEEecc
Confidence 4689999999999987432 238999998653
No 164
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=88.55 E-value=0.76 Score=40.80 Aligned_cols=41 Identities=29% Similarity=0.438 Sum_probs=32.1
Q ss_pred ccCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 333 RVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 333 ~~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.++++|++.. ..||+|.-|+|||+.-... +...|.|.+..+
T Consensus 75 ~i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t--~~i~AlK~I~~~ 115 (364)
T KOG0581|consen 75 GISLSDLERL-------GVLGSGNGGTVYKVRHKPT--GKIYALKVILLN 115 (364)
T ss_pred ccCHHHhhhh-------hhcccCCCcEEEEEEEcCC--CeEEEEEeeccc
Confidence 3667777775 7899999999999988643 348999999543
No 165
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=88.20 E-value=0.49 Score=46.55 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=27.1
Q ss_pred CcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 347 SLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 347 ~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.-++.|.+|||+.||.+...+++ ..+|+||+-..
T Consensus 40 ~V~~vLAEGGFa~VYla~~~~~~--~~~AlKrm~~~ 73 (738)
T KOG1989|consen 40 TVEKVLAEGGFAQVYLAQDVKGG--KKYALKRMYVN 73 (738)
T ss_pred EEEEEEccCCcEEEEEEEecCCC--ceeeeeeeecC
Confidence 33578999999999999996652 37999998543
No 166
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.89 E-value=0.21 Score=42.40 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=25.9
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEee
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLN 380 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~ 380 (388)
+...++-||.|+||+||..+=+. +|..||.|++-
T Consensus 54 Di~PDRPIGYGAFGVVWsVTDPR--dgrrvalkK~p 87 (449)
T KOG0664|consen 54 DIQPDRPIGYGAFGVVWSVTDPR--SGKRVALKKMP 87 (449)
T ss_pred cCCCCCcccccceeEEEeccCCC--CccchhHhhcc
Confidence 34567889999999999887632 23479999884
No 167
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=87.45 E-value=0.95 Score=25.50 Aligned_cols=9 Identities=33% Similarity=0.600 Sum_probs=3.4
Q ss_pred eehhhhHHH
Q 042573 290 LIIPVVTVI 298 (388)
Q Consensus 290 ~~~~i~~~~ 298 (388)
++++++.++
T Consensus 8 IIv~V~vg~ 16 (38)
T PF02439_consen 8 IIVAVVVGM 16 (38)
T ss_pred HHHHHHHHH
Confidence 333443333
No 168
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=86.67 E-value=0.5 Score=41.76 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=25.4
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEee
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLN 380 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~ 380 (388)
+....-||+|++|.|++++-.. +|..||||++.
T Consensus 24 y~~~~~iG~GAyGvVcsA~~~~--t~~~VAIKKi~ 56 (359)
T KOG0660|consen 24 YVLIEPIGRGAYGVVCSAKDKR--TGEKVAIKKIL 56 (359)
T ss_pred ecccccccCcceeeEEEEEEcC--CCCEeehhhhh
Confidence 3334679999999999998743 23489999986
No 169
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=86.64 E-value=0.71 Score=41.71 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=24.9
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.+.||+|+||.|-.|.=.. +|+.||||.+++..
T Consensus 177 ~~~LGsGafg~Vkla~e~~--tgk~vAiKIi~krk 209 (475)
T KOG0615|consen 177 SKTLGSGAFGLVKLAYEKK--TGKQVAIKIINKRK 209 (475)
T ss_pred eeeecCCceeEEEEEEEcc--cCcEEEeeeeehhh
Confidence 3679999999998884422 34589999997653
No 170
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=85.92 E-value=0.53 Score=46.29 Aligned_cols=44 Identities=30% Similarity=0.430 Sum_probs=30.9
Q ss_pred hhcCCCcCceeecCCCceEEEEEeCCCC-----ceeEEEEEEeecCCCC
Q 042573 342 ATDGFSLENLIGAGSFGSVYKGILTHDD-----HETLVAVKVLNLEHGG 385 (388)
Q Consensus 342 at~~f~~~~~lg~g~fg~vy~g~l~~g~-----~~~~vavK~l~~~~~~ 385 (388)
..+++.-.+.+|+|.||.|++|.+.+-. ....||||+++....+
T Consensus 294 ~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~ 342 (609)
T KOG0200|consen 294 PRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS 342 (609)
T ss_pred chhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCc
Confidence 3344444458999999999999873210 1348999999877654
No 171
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=85.41 E-value=0.37 Score=45.00 Aligned_cols=42 Identities=24% Similarity=0.353 Sum_probs=32.6
Q ss_pred HHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 340 FKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 340 ~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
....+||....+||+|+|..||+|+=.+ ++...|||.|.+.+
T Consensus 69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~--t~keYAiKVl~K~~ 110 (604)
T KOG0592|consen 69 KKTPNDFKFGKILGEGSYSTVVLAREKA--TGKEYAIKVLDKRY 110 (604)
T ss_pred cCChhhcchhheeccccceeEEEeeecC--CCceeeHhhhhHHH
Confidence 3445778888999999999999997744 23489999997653
No 172
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=85.15 E-value=0.96 Score=36.22 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=26.0
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
...|++|.+|.||.|.+.++ .||+|.=+.++
T Consensus 27 ~~~L~KG~~s~Vyl~~~~~~----~~a~Kvrr~ds 57 (201)
T COG2112 27 EKELAKGTTSVVYLGEWRGG----EVALKVRRRDS 57 (201)
T ss_pred hhhhhcccccEEEEeeccCc----eEEEEEecCCc
Confidence 36799999999999999877 69999766554
No 173
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=85.12 E-value=0.39 Score=43.42 Aligned_cols=131 Identities=20% Similarity=0.140 Sum_probs=73.3
Q ss_pred cccEEEeecCce-eecCcccc-cCCCCCCEEECcCCcc-ccCCCccc-cCCCCCCEEEcccCccccc--CCcCccCCCCC
Q 042573 12 RLGKLSVAENQL-FGNIPSGL-TNLVNLELLDLGDNQF-TGRIPGSI-GDLQKLQRLWLKGNKFWGE--IPSSIGNLTSL 85 (388)
Q Consensus 12 ~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~L~l~~n~~-~~~~~~~~-~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L 85 (388)
.|+.|+.+++.. ++..-..+ .+.++|+.|.+..++. +..--..+ .++++|+.+++..+..... +...=.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 377777776543 32222222 5677888888888763 21111122 2577888888877754311 22222356788
Q ss_pred CEEeccCCcccccC-----CcCCCCCCCCCEEeCCCCcCC-CcCChhhhccCcccceEEccCcc
Q 042573 86 AILDFAENMLEGSI-----PSSLGKCQNLILLDLSKNNLS-GTIPTEVIGLPSFSIYLNLSQNQ 143 (388)
Q Consensus 86 ~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~l~~~L~l~~n~ 143 (388)
+.|.++++...... ...-..+..|..+.++++... ....+.+...+.+ +.+++.+++
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L-eri~l~~~q 437 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL-ERIELIDCQ 437 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc-ceeeeechh
Confidence 88888877543221 223345667788888877653 1222334555566 666666554
No 174
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.87 E-value=0.2 Score=40.57 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=20.1
Q ss_pred CCCCEEECCCC-cCccccchhhhcCCCCcEEEccc
Q 042573 204 RGIEKLDLSRN-NLSGRIPKYFENFLFLQKLNLSF 237 (388)
Q Consensus 204 ~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~l~l~~ 237 (388)
++|+.|++++| +||+..-.++..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 56666666655 45555455556666666665554
No 175
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=84.65 E-value=0.75 Score=40.46 Aligned_cols=31 Identities=35% Similarity=0.649 Sum_probs=24.2
Q ss_pred CCCcCceeecCCCceEEEEE-eCCCCceeEEEEEE
Q 042573 345 GFSLENLIGAGSFGSVYKGI-LTHDDHETLVAVKV 378 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~-l~~g~~~~~vavK~ 378 (388)
+|.-...||+|.||+.+.|+ |-.+ + +||||-
T Consensus 29 hyrVGkKIGeGsFG~lf~G~Nl~nn-e--~VAIKf 60 (449)
T KOG1165|consen 29 HYRVGKKIGEGSFGVLFLGKNLYNN-E--PVAIKF 60 (449)
T ss_pred cceeccccccCcceeeecccccccC-c--eEEEEe
Confidence 56667899999999999995 3333 3 899993
No 176
>PHA03210 serine/threonine kinase US3; Provisional
Probab=84.44 E-value=0.43 Score=45.78 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=19.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTH 367 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~ 367 (388)
++|.....||+|+||.||+++...
T Consensus 148 ~~Y~ii~~LG~G~fG~Vyl~~~~~ 171 (501)
T PHA03210 148 AHFRVIDDLPAGAFGKIFICALRA 171 (501)
T ss_pred hccEEEeEecCCCCcceEEEEEec
Confidence 456667889999999999998754
No 177
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=84.09 E-value=0.92 Score=38.28 Aligned_cols=36 Identities=8% Similarity=-0.199 Sum_probs=28.6
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.|...+++|.|+||.||...-.++ .+|||.+++..
T Consensus 31 ~~y~~~~~l~~~~f~~v~l~~~~~~----~~iiKvf~~~~ 66 (232)
T PRK10359 31 YNIKTIKVFRNIDDTKVSLIDTDYG----KYILKVFAPKV 66 (232)
T ss_pred CceEEEEEecCCCceEEEEEecCCC----cEEEEEechhc
Confidence 5667778999999999999766433 59999997654
No 178
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.01 E-value=0.99 Score=41.29 Aligned_cols=37 Identities=32% Similarity=0.588 Sum_probs=28.1
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCCC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHG 384 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~ 384 (388)
+.-..+||.|..++||+|+...-.+ .||||++.-+..
T Consensus 28 YeL~e~IG~G~sa~V~~A~c~p~~e--~VAIK~inLEkc 64 (516)
T KOG0582|consen 28 YELQEVIGVGASAVVYLARCIPTNE--VVAIKIINLEKC 64 (516)
T ss_pred eeEEEEEeccceeEeeeeeecccCC--EEEEEEeehhhh
Confidence 3334679999999999998854324 899999976543
No 179
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=83.47 E-value=0.17 Score=46.16 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=29.2
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.|..-++||+||||.||--+.++ +|..-|.|+|.+.
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvra--TGKMYAcKkL~KK 221 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRA--TGKMYACKKLDKK 221 (591)
T ss_pred cceeeeEEEecccccceeEEEEec--chhhHHHHHHHHH
Confidence 567888999999999999887754 3448899888544
No 180
>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=83.17 E-value=1.7 Score=38.91 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=27.0
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.|.-...||+|+||.||.+.=.... ...+|+|.-...
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~-~~~~a~K~e~~~ 55 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEK-NKEYAKKLEKKE 55 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCC-CeeEEEEEEEec
Confidence 5677789999999999999864431 225787766554
No 181
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=83.09 E-value=0.11 Score=44.62 Aligned_cols=31 Identities=32% Similarity=0.570 Sum_probs=24.2
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
..||+|++|.|||+.-+.. |.+||||+.-.+
T Consensus 39 ~KLGEGSYGSV~KAIH~Es--G~v~AIK~VPV~ 69 (502)
T KOG0574|consen 39 GKLGEGSYGSVHKAIHRES--GHVLAIKKVPVD 69 (502)
T ss_pred HHhcCCcchHHHHHHHhcc--CcEEEEEecCcc
Confidence 5699999999999977442 349999987543
No 182
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=82.66 E-value=0.82 Score=43.59 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=26.3
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+=|+.++.|-||+|+|.+| + .||||..+++-
T Consensus 131 ~PiAsASIaQVH~A~L~sG-~--~VAVKVqrPgi 161 (517)
T COG0661 131 EPIASASIAQVHRAVLKSG-E--EVAVKVQRPGI 161 (517)
T ss_pred CchhhhhHhhheeEEecCC-C--EEEEEecCCCh
Confidence 4578999999999999887 4 79999988753
No 183
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.22 E-value=0.65 Score=42.03 Aligned_cols=37 Identities=30% Similarity=0.493 Sum_probs=29.4
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+|.--.+||+|+||.|..|+-.+- ....|||.|+++.
T Consensus 350 DFnFl~VlGKGSFGKVlLaerkgt--dELyAiKiLkKDV 386 (683)
T KOG0696|consen 350 DFNFLMVLGKGSFGKVLLAERKGT--DELYAIKILKKDV 386 (683)
T ss_pred ccceEEEeccCccceeeeecccCc--chhhhhhhhccce
Confidence 566668999999999999977544 2388999998764
No 184
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=81.95 E-value=0.46 Score=42.86 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=27.1
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.||.|..|.||.+++.+- ++..|+|.+.++.
T Consensus 83 k~LG~GdiG~VyL~~l~~t--~~~fAmKVmdK~~ 114 (459)
T KOG0610|consen 83 KRLGCGDIGTVYLVELRGT--NCLFAMKVMDKES 114 (459)
T ss_pred HHcCCCCceeEEEEEecCC--CceEEEEEecHHH
Confidence 6799999999999999764 3589999997654
No 185
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=81.26 E-value=0.33 Score=45.74 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=24.8
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.-||.|+-|.||+|+|.+. .||||+.+..
T Consensus 130 eWlGSGaQGAVF~Grl~ne----tVAVKKV~el 158 (904)
T KOG4721|consen 130 EWLGSGAQGAVFLGRLHNE----TVAVKKVREL 158 (904)
T ss_pred hhhccCcccceeeeeccCc----eehhHHHhhh
Confidence 5589999999999999766 6999998653
No 186
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=79.12 E-value=1.8 Score=37.17 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=25.4
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
..||.|..|.|+|.+++.. |..+|||.+...
T Consensus 98 ~dlGsGtcG~V~k~~~rs~--~~iiAVK~M~rt 128 (391)
T KOG0983|consen 98 GDLGSGTCGQVWKMRFRST--GHIIAVKQMRRT 128 (391)
T ss_pred HhhcCCCccceEEEEEccc--ceEEEEEeeccc
Confidence 4589999999999999653 348999999654
No 187
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=79.05 E-value=1.3 Score=38.52 Aligned_cols=34 Identities=29% Similarity=0.589 Sum_probs=28.3
Q ss_pred cCHHHHHHhhcCCCcCceeecCCCceEEEEEeCC
Q 042573 334 VSYENLFKATDGFSLENLIGAGSFGSVYKGILTH 367 (388)
Q Consensus 334 ~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~ 367 (388)
.++.++..+.+.|.....||+|+||.||+|+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~ 39 (282)
T cd06636 6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVK 39 (282)
T ss_pred hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcC
Confidence 4667777778888888999999999999998843
No 188
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=78.57 E-value=0.87 Score=37.28 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=26.4
Q ss_pred HHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 340 FKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 340 ~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.+.++......||+|++|.|-|-+..- .|+..||||+...
T Consensus 42 eV~ad~L~~i~elGrGayG~vekmrh~~--sg~imAvKri~~t 82 (282)
T KOG0984|consen 42 EVPADDLVGIEELGRGAYGVVEKMRHIQ--SGTIMAVKRIRAT 82 (282)
T ss_pred ccchhhhhhhhhhcCCccchhhheeecc--CCeEEEEeeehhh
Confidence 3333333334569999999886665522 2348999999653
No 189
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.39 E-value=1.9 Score=32.09 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=10.2
Q ss_pred eeehhhhHHHHHHHHHHHHH
Q 042573 289 KLIIPVVTVILLVTGMSCFI 308 (388)
Q Consensus 289 ~~~~~i~~~~~~~~~~~~~~ 308 (388)
.++.+++++++.++++++++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLI 84 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHH
Confidence 45555556655555444443
No 190
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=78.34 E-value=2.2 Score=40.64 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=24.9
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
|...+.||+|+||.||+|.-... .+..||+|.+..
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~-~~~~vv~K~~~~ 103 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSD-PKEKVVAKFVML 103 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCC-CCeEEEEEEccc
Confidence 44457899999999999975332 123788887643
No 191
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=77.73 E-value=0.7 Score=40.23 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=26.9
Q ss_pred CCcCceeecCCCceEEEEEeCCCCc--eeEEEEEEeecCC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDH--ETLVAVKVLNLEH 383 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~--~~~vavK~l~~~~ 383 (388)
|.....||+|.+|.||||+=.++.. ....|+|+.+.+.
T Consensus 26 ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~k 65 (438)
T KOG0666|consen 26 YEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEK 65 (438)
T ss_pred hhccceecccccceeeEeeeccCCcccchhhHHHHHhccC
Confidence 3334569999999999996644322 2368999997764
No 192
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.57 E-value=2.2 Score=22.02 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=7.8
Q ss_pred CCCCEEeccCCccc
Q 042573 83 TSLAILDFAENMLE 96 (388)
Q Consensus 83 ~~L~~L~l~~n~l~ 96 (388)
.+|++|+++.|.++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555554
No 193
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.52 E-value=2.7 Score=39.63 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=26.8
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCCC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHG 384 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~ 384 (388)
|..-..||+|+.|.||.++=... ++.||||++.....
T Consensus 275 y~~~~kigqgaSG~vy~A~~~~~--~~~VaiK~m~l~~Q 311 (550)
T KOG0578|consen 275 YTDFKKIGQGATGGVYVARKIST--KQEVAIKRMDLRKQ 311 (550)
T ss_pred hcchhhhccccccceeeeeeccC--CceEEEEEEEeccC
Confidence 34446799999999999955332 23899999976443
No 194
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=77.35 E-value=2.5 Score=39.14 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=28.3
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
-+.|.-...||+|.||.|-+|.=.. ++..+|||.|.+.
T Consensus 96 lNqy~l~~eiG~G~yGkVkLar~~~--~~~l~AiKil~K~ 133 (576)
T KOG0585|consen 96 LNQYELIKEIGSGQYGKVKLARDEV--DGKLYAIKILPKK 133 (576)
T ss_pred hhheehhhhhcCCccceEEEEeecC--CCcEEEEEeechh
Confidence 3556666789999999998885532 3349999998653
No 195
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=77.22 E-value=0.42 Score=43.58 Aligned_cols=28 Identities=39% Similarity=0.675 Sum_probs=20.4
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEe
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVL 379 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l 379 (388)
++||+|||..|||+-=--. ...||||.=
T Consensus 469 hLLGrGGFSEVyKAFDl~E--qRYvAvKIH 496 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDLTE--QRYVAVKIH 496 (775)
T ss_pred HHhccccHHHHHHhcccch--hheeeEeee
Confidence 4789999999999943211 138999854
No 196
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=75.14 E-value=2.9 Score=39.87 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=28.4
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
|+.-..+|+|+||.|+.++...... .|+||.+.+++
T Consensus 563 yttlq~lG~GAyGkV~lai~K~n~~--eVViK~I~KeR 598 (772)
T KOG1152|consen 563 YTTLQPLGEGAYGKVNLAIHKENNY--EVVIKMIFKER 598 (772)
T ss_pred ceeeeeccccccceEEEeeecccce--EEEeeehhhhh
Confidence 4445679999999999999955433 79999987765
No 197
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=72.90 E-value=0.77 Score=46.97 Aligned_cols=44 Identities=30% Similarity=0.424 Sum_probs=34.2
Q ss_pred HHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 336 YENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 336 ~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
..+++.-.++|.-..+||+|+||.|...+...- +.+-|-|+|++
T Consensus 67 v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t--~~VYAMK~lnK 110 (1317)
T KOG0612|consen 67 VKELRLKAEDFEILKVIGRGAFGEVALVRHKST--EKVYAMKILNK 110 (1317)
T ss_pred HHHHhCCHHhhHHHHHhcccccceeEEEEeecc--ccchhHHHhhH
Confidence 345666667888788999999999999988542 33789999865
No 198
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=72.52 E-value=4.4 Score=33.13 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=3.8
Q ss_pred cceeehhhh
Q 042573 287 SLKLIIPVV 295 (388)
Q Consensus 287 ~~~~~~~i~ 295 (388)
...|+++++
T Consensus 36 ~~~I~iaiV 44 (221)
T PF08374_consen 36 YVKIMIAIV 44 (221)
T ss_pred ceeeeeeee
Confidence 344444443
No 199
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.41 E-value=2.8 Score=21.96 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=9.9
Q ss_pred CCCCEEECCCCcCcc
Q 042573 204 RGIEKLDLSRNNLSG 218 (388)
Q Consensus 204 ~~L~~L~l~~n~l~~ 218 (388)
++|++|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456777777777653
No 200
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=71.32 E-value=5.2 Score=36.17 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=27.0
Q ss_pred cCHHHHHHhhcCCCcCceeecCCCceEEEEEeC
Q 042573 334 VSYENLFKATDGFSLENLIGAGSFGSVYKGILT 366 (388)
Q Consensus 334 ~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~ 366 (388)
....++..+++.|.....||+|+||.||+|...
T Consensus 7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~ 39 (345)
T cd07877 7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDT 39 (345)
T ss_pred hHHHHHhhccCceEEEEEeeecCCeEEEEEEEc
Confidence 344566677888888889999999999999864
No 201
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.17 E-value=3.9 Score=21.07 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=8.4
Q ss_pred CCCCEEECCCCcCc
Q 042573 204 RGIEKLDLSRNNLS 217 (388)
Q Consensus 204 ~~L~~L~l~~n~l~ 217 (388)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 34566666666665
No 202
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=68.10 E-value=3.9 Score=35.57 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=27.0
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
|.....||.|+||.|-..+...+ |..-|.|.|++.
T Consensus 46 fe~~~tlGtGSFGrV~LVr~k~~--g~yYAmKvL~k~ 80 (355)
T KOG0616|consen 46 FERLKTLGTGSFGRVHLVREKHS--GNYYAMKVLDKQ 80 (355)
T ss_pred hhheeeeccCccceEEEEEEccC--CceeehhhcCHH
Confidence 44457899999999999888543 238999999764
No 203
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=67.41 E-value=1.8 Score=37.69 Aligned_cols=7 Identities=14% Similarity=0.021 Sum_probs=0.0
Q ss_pred CHHHHHH
Q 042573 335 SYENLFK 341 (388)
Q Consensus 335 ~~~~l~~ 341 (388)
--+|++.
T Consensus 195 F~dElee 201 (290)
T PF05454_consen 195 FQDELEE 201 (290)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3344443
No 204
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=66.69 E-value=12 Score=30.71 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=13.0
Q ss_pred ceeehhhhHHHHHHHHHHHHHHHHhhccc
Q 042573 288 LKLIIPVVTVILLVTGMSCFIITSWQSKS 316 (388)
Q Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 316 (388)
+.|++.+.+.++++++++...|++|+||.
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRS 129 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhcc
Confidence 34444444433344444444455555554
No 205
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=66.60 E-value=5 Score=30.96 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=5.1
Q ss_pred cCCCcCceeec
Q 042573 344 DGFSLENLIGA 354 (388)
Q Consensus 344 ~~f~~~~~lg~ 354 (388)
++|..+.=||.
T Consensus 112 ~~y~s~splg~ 122 (154)
T PF04478_consen 112 DKYESNSPLGS 122 (154)
T ss_pred cccccCCCCCC
Confidence 44444444554
No 206
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.03 E-value=2.4 Score=37.29 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=28.4
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++|.--.+||+|.||.|...+=.. +|..-|+|.|+++.
T Consensus 168 ~dFdfLKvLGkGTFGKVIL~rEKa--t~k~YAiKIlkKev 205 (516)
T KOG0690|consen 168 EDFDFLKVLGKGTFGKVILCREKA--TGKLYAIKILKKEV 205 (516)
T ss_pred chhhHHHHhcCCccceEEEEeecc--cCceeehhhhhhhh
Confidence 567777899999999998765422 23489999998753
No 207
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=65.67 E-value=3.5 Score=30.46 Aligned_cols=9 Identities=11% Similarity=0.331 Sum_probs=2.8
Q ss_pred CCCcccccc
Q 042573 275 TCSIKESKQ 283 (388)
Q Consensus 275 ~c~~~~~~~ 283 (388)
.|+.....+
T Consensus 66 ~C~a~p~~p 74 (129)
T PF12191_consen 66 GCPAAPPAP 74 (129)
T ss_dssp CHSS-SSS-
T ss_pred CCCCCCCCC
Confidence 344444333
No 208
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=65.31 E-value=4 Score=35.82 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhcccC
Q 042573 303 GMSCFIITSWQSKSK 317 (388)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (388)
.+++++.+++||+++
T Consensus 272 MvIIYLILRYRRKKK 286 (299)
T PF02009_consen 272 MVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHhh
Confidence 333344444444333
No 209
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.59 E-value=30 Score=32.35 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=19.1
Q ss_pred CCEEECCCCcCccccchh---hhcCCCCcEEEcccccCc
Q 042573 206 IEKLDLSRNNLSGRIPKY---FENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 206 L~~L~l~~n~l~~~~~~~---l~~l~~L~~l~l~~n~~~ 241 (388)
+..+.++.|......... +..-+.+.++++++|.+.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 455666666655332222 223345677777776654
No 210
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=63.36 E-value=6.2 Score=29.76 Aligned_cols=6 Identities=17% Similarity=0.279 Sum_probs=2.4
Q ss_pred CCCccc
Q 042573 275 TCSIKE 280 (388)
Q Consensus 275 ~c~~~~ 280 (388)
.|-...
T Consensus 16 ecls~~ 21 (189)
T PF05568_consen 16 ECLSPV 21 (189)
T ss_pred hhcCCC
Confidence 344333
No 211
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=62.32 E-value=4.5 Score=36.70 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=19.6
Q ss_pred hcCCCcCceeecCCCceEEEEEeC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILT 366 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~ 366 (388)
.+.|...+.||+|+||.||++.-.
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~ 39 (355)
T cd07874 16 LKRYQNLKPIGSGAQGIVCAAYDA 39 (355)
T ss_pred hhceeEEEEeeecCCEEEEEEEec
Confidence 356766788999999999999753
No 212
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=60.50 E-value=5.9 Score=35.20 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=18.9
Q ss_pred CCCcCceeecCCCceEEEEEeCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTH 367 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~ 367 (388)
++...+.||+|.||.||.++..+
T Consensus 18 ~~~~~~~lG~Gs~G~V~l~~~~~ 40 (313)
T KOG0198|consen 18 NWSKGKLLGRGSFGSVYLATNKK 40 (313)
T ss_pred hhhhhccccCccceEEEEEEecC
Confidence 34455889999999999999854
No 213
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=60.32 E-value=13 Score=21.32 Aligned_cols=10 Identities=40% Similarity=0.979 Sum_probs=4.2
Q ss_pred HHHHHHhhcc
Q 042573 306 CFIITSWQSK 315 (388)
Q Consensus 306 ~~~~~~~~~~ 315 (388)
.+++..|..|
T Consensus 27 ~~iYRKw~aR 36 (43)
T PF08114_consen 27 LFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 214
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.23 E-value=9.5 Score=37.56 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=23.7
Q ss_pred eeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 351 LIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 351 ~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+||+|.+|+||-|+=.+-+ ..+|||-+-+.
T Consensus 582 VLGKGTYG~VYA~RD~~tq--vrIaIKEIpek 611 (1226)
T KOG4279|consen 582 VLGKGTYGTVYAARDMDTQ--VRIAIKEIPEK 611 (1226)
T ss_pred EeecCceeEEEeeccccce--eEEEeeecccc
Confidence 6999999999999875542 37899988543
No 215
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.85 E-value=4.4 Score=38.35 Aligned_cols=65 Identities=20% Similarity=0.098 Sum_probs=29.7
Q ss_pred ccccceecccCccccccC--CccCcCCCCCCEEECCCCcCccccchhhhcC--CCCcEEEcccccCccc
Q 042573 179 CIRLEQLVMNGNFFRGNI--PSSFSSLRGIEKLDLSRNNLSGRIPKYFENF--LFLQKLNLSFNHFEGE 243 (388)
Q Consensus 179 l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~l~l~~n~~~~~ 243 (388)
.+.+..++|++|++.... ..--...|.|+.|+|++|...-....++..+ ..|++|-+.+|++...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 345555666666554221 0111123666677777662111111122221 2366666777776543
No 216
>PHA03265 envelope glycoprotein D; Provisional
Probab=58.69 E-value=7.6 Score=34.29 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhccc
Q 042573 302 TGMSCFIITSWQSKS 316 (388)
Q Consensus 302 ~~~~~~~~~~~~~~~ 316 (388)
+++.++++++||||+
T Consensus 362 v~vg~il~~~~rr~k 376 (402)
T PHA03265 362 VLVGVILYVCLRRKK 376 (402)
T ss_pred hhhhHHHHHHhhhhh
Confidence 334444455555554
No 217
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=56.37 E-value=8.4 Score=38.70 Aligned_cols=49 Identities=29% Similarity=0.542 Sum_probs=35.7
Q ss_pred CHHHHHHhhcCCCcCceeecCCCceEEEEEe-CCCCceeEEEEEEeecCCCCC
Q 042573 335 SYENLFKATDGFSLENLIGAGSFGSVYKGIL-THDDHETLVAVKVLNLEHGGA 386 (388)
Q Consensus 335 ~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l-~~g~~~~~vavK~l~~~~~~~ 386 (388)
.++.+...++-|.-...||.|.+|.|||++= .+| + .+|||.+......+
T Consensus 10 ~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~-~--~aa~kI~~~~~d~d 59 (953)
T KOG0587|consen 10 DLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTG-Q--LAAIKIMDPTEDEE 59 (953)
T ss_pred chhhCCCCCCccEEEEEEeeccceeEEEEeeeecC-c--eeeeEeecCCcccc
Confidence 4445555667777778899999999999965 334 4 78888887765544
No 218
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=55.86 E-value=3.6 Score=34.83 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=25.6
Q ss_pred CCcCceeecCCCceEEEEE-eCCCCceeEEEEEEeecCC
Q 042573 346 FSLENLIGAGSFGSVYKGI-LTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~-l~~g~~~~~vavK~l~~~~ 383 (388)
|.-.+.+|+|||..||.++ +..+ . .-|+||+.=..
T Consensus 23 yri~~~LgeGGfsfv~LV~~~s~~-~--~YAlKkI~c~~ 58 (302)
T KOG2345|consen 23 YRIQRLLGEGGFSFVDLVKGLSTG-H--LYALKKILCHS 58 (302)
T ss_pred EEEeeeecCCCceeeeeecccCcc-c--chhhheeeccc
Confidence 3334789999999999886 4444 2 78999986433
No 219
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.27 E-value=6.3 Score=37.35 Aligned_cols=66 Identities=21% Similarity=0.089 Sum_probs=33.4
Q ss_pred cCCCCCEEEcccCcccccC--ChhhccccccceecccCc--cccccCCccCcCCCCCCEEECCCCcCccc
Q 042573 154 ILKNLGVISLSENKLSGEI--PSSLGSCIRLEQLVMNGN--FFRGNIPSSFSSLRGIEKLDLSRNNLSGR 219 (388)
Q Consensus 154 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 219 (388)
+.+.+..++|++|++.... ...-...|.|..|+|++| .+.....-.--....|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 3456666777777664221 111233466777777777 32211110111224467777777766543
No 220
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=50.82 E-value=25 Score=24.15 Aligned_cols=8 Identities=0% Similarity=0.110 Sum_probs=3.0
Q ss_pred HHHHhhcc
Q 042573 308 IITSWQSK 315 (388)
Q Consensus 308 ~~~~~~~~ 315 (388)
++.+|++|
T Consensus 51 wfvCC~kR 58 (94)
T PF05393_consen 51 WFVCCKKR 58 (94)
T ss_pred HHHHHHHh
Confidence 33334333
No 221
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=50.70 E-value=15 Score=35.34 Aligned_cols=49 Identities=31% Similarity=0.341 Sum_probs=34.6
Q ss_pred cccccCHHHHHHhh------------cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 330 SVLRVSYENLFKAT------------DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 330 ~~~~~~~~~l~~at------------~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
..++++++|....- ..|+ +.-||.-+.|.||+|++.+| + .||||.-+++
T Consensus 136 ~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~-~~piaaASlaQVhrA~L~~G-~--~VaVKVQ~P~ 196 (538)
T KOG1235|consen 136 QAPPFPWEEAFKIFEEELGAPIEDIFSEFD-EEPIAAASLAQVHRARLKNG-E--DVAVKVQHPG 196 (538)
T ss_pred cCCCCCHHHHHHHHHHHhCCCHHHHHHhcC-cchhhhcchhheEEEEecCC-C--EEEEEecCcC
Confidence 45567777666532 1333 23578889999999999988 4 7999987654
No 222
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=50.30 E-value=29 Score=33.69 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=4.4
Q ss_pred ceeehhhhHHH
Q 042573 288 LKLIIPVVTVI 298 (388)
Q Consensus 288 ~~~~~~i~~~~ 298 (388)
.+|++++++.+
T Consensus 269 lWII~gVlvPv 279 (684)
T PF12877_consen 269 LWIIAGVLVPV 279 (684)
T ss_pred eEEEehHhHHH
Confidence 34444444333
No 223
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=49.82 E-value=6 Score=36.01 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=24.5
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
..||+|.+|.|-++.=... |..||||.++++.
T Consensus 59 etLGkGTYGKVk~A~e~~s--gR~VAiKsIrKdk 90 (668)
T KOG0611|consen 59 ETLGKGTYGKVKLAYEHKS--GREVAIKSIRKDK 90 (668)
T ss_pred HHhcCCcccceeehhhccC--CcEeehhhhhhhh
Confidence 4599999999999855322 3389999998764
No 224
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=49.47 E-value=14 Score=33.13 Aligned_cols=29 Identities=17% Similarity=0.503 Sum_probs=12.2
Q ss_pred eeehhhhHHHHHHH-HHHHHHHHHhhcccC
Q 042573 289 KLIIPVVTVILLVT-GMSCFIITSWQSKSK 317 (388)
Q Consensus 289 ~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~ 317 (388)
.++.+++++++.++ .+++++..++||+++
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 44444443333333 333444444454443
No 225
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=48.26 E-value=29 Score=29.52 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=23.8
Q ss_pred Cceee-cCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 349 ENLIG-AGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 349 ~~~lg-~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
..+|| .||.|+||+....++ .+|||+...
T Consensus 36 ~~~lg~~~g~gtv~~v~~~~~----~~vlk~~~r 65 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQTPGV----NWVLRHYRR 65 (239)
T ss_pred CceeecCCCCccEEEEEeCCc----eEEEEEeeE
Confidence 46898 899999999999765 589997753
No 226
>PTZ00046 rifin; Provisional
Probab=47.64 E-value=15 Score=32.93 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=12.5
Q ss_pred eeehhhhHHHHHHHH-HHHHHHHHhhcccC
Q 042573 289 KLIIPVVTVILLVTG-MSCFIITSWQSKSK 317 (388)
Q Consensus 289 ~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~ 317 (388)
.++.+++++++.+++ +++++..++||+++
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 444444444433333 34444444454443
No 227
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=46.49 E-value=28 Score=21.06 Aligned_cols=8 Identities=13% Similarity=-0.039 Sum_probs=3.1
Q ss_pred HHHHHhhc
Q 042573 307 FIITSWQS 314 (388)
Q Consensus 307 ~~~~~~~~ 314 (388)
+++.++++
T Consensus 26 ~~w~~~~~ 33 (49)
T PF05545_consen 26 VIWAYRPR 33 (49)
T ss_pred HHHHHccc
Confidence 34444333
No 228
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=46.00 E-value=12 Score=33.97 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.1
Q ss_pred cCCCcCceeecCCCceEEEEEeC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILT 366 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~ 366 (388)
+.|...+.||+|+||.||+|+-.
T Consensus 16 ~~y~~~~~lg~g~~g~V~~~~~~ 38 (353)
T cd07850 16 KRYQNLKPIGSGAQGIVCAAYDT 38 (353)
T ss_pred cceEEEEEeccCCCEEEEEEEEC
Confidence 45666788999999999999863
No 229
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.68 E-value=5.3 Score=38.66 Aligned_cols=30 Identities=37% Similarity=0.654 Sum_probs=21.6
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
-.||.|+||.|||++-.+ .+...|-|.+.-
T Consensus 38 GELGDGAFGKVyKA~nke--t~~lAAaKvIet 67 (1187)
T KOG0579|consen 38 GELGDGAFGKVYKAVNKE--TKLLAAAKVIET 67 (1187)
T ss_pred hhhcCccchhhhhhhccc--chhhhhhhhhcc
Confidence 358999999999998753 233567776643
No 230
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=44.55 E-value=16 Score=18.44 Aligned_cols=11 Identities=36% Similarity=0.432 Sum_probs=5.0
Q ss_pred CCCCEEEcccC
Q 042573 59 QKLQRLWLKGN 69 (388)
Q Consensus 59 ~~L~~L~L~~n 69 (388)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 231
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=43.58 E-value=28 Score=33.56 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=29.6
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.++.-...||+|.|+.|..|+-..- |..||||-+++..
T Consensus 55 vg~y~i~~tig~g~f~~V~La~~~~t--~~~VaiK~idkt~ 93 (596)
T KOG0586|consen 55 VGLYVIIKTIGKGNFAKVKLARHILT--GTEVAIKIIDKTQ 93 (596)
T ss_pred ccceeeeeeeccceeEEEEeeEecCC--CceEEEEEehhcc
Confidence 45666678899999999999976432 2379999887654
No 232
>PF15050 SCIMP: SCIMP protein
Probab=43.49 E-value=25 Score=25.74 Aligned_cols=12 Identities=17% Similarity=0.650 Sum_probs=4.9
Q ss_pred HHHHHHHHhhcc
Q 042573 304 MSCFIITSWQSK 315 (388)
Q Consensus 304 ~~~~~~~~~~~~ 315 (388)
++.+++++|..|
T Consensus 25 lIlyCvcR~~lR 36 (133)
T PF15050_consen 25 LILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 233
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=42.86 E-value=28 Score=28.78 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=26.2
Q ss_pred cCCCcCceeecCCC-ceEEEEEeCCCCceeEEEEEE
Q 042573 344 DGFSLENLIGAGSF-GSVYKGILTHDDHETLVAVKV 378 (388)
Q Consensus 344 ~~f~~~~~lg~g~f-g~vy~g~l~~g~~~~~vavK~ 378 (388)
.+|..-..||.|.- |.|||.++.+. ..|+|.
T Consensus 37 ~~I~flefLg~g~~~~~V~kv~I~g~----~YALKl 68 (207)
T PF13095_consen 37 DDIEFLEFLGHGSHDGYVFKVEIDGR----IYALKL 68 (207)
T ss_pred CcEeeeeecCCCCceeEEEEEEECCe----EEEEEE
Confidence 56666688999999 99999999654 799998
No 234
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=41.29 E-value=19 Score=31.98 Aligned_cols=10 Identities=10% Similarity=0.012 Sum_probs=3.9
Q ss_pred HHHHhhcccC
Q 042573 308 IITSWQSKSK 317 (388)
Q Consensus 308 ~~~~~~~~~~ 317 (388)
.|++.|||.+
T Consensus 291 aYli~Rrr~~ 300 (306)
T PF01299_consen 291 AYLIGRRRSR 300 (306)
T ss_pred hheeEecccc
Confidence 3333444433
No 235
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.24 E-value=9 Score=33.91 Aligned_cols=39 Identities=33% Similarity=0.477 Sum_probs=31.1
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
-++|.--++||+|++..|..+++..-++ ..|+|.++++-
T Consensus 249 l~df~ll~vigrgsyakvl~~~~~~t~q--iyamkvvkkel 287 (593)
T KOG0695|consen 249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQ--IYAMKVVKKEL 287 (593)
T ss_pred cccceeeeeecCcchhhhhheehcccce--eeehhhHHHHh
Confidence 3567778899999999999999955433 78999887664
No 236
>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.44 E-value=12 Score=35.40 Aligned_cols=32 Identities=38% Similarity=0.538 Sum_probs=23.4
Q ss_pred CcCceeecCCCceEEEE--EeCCCCceeEEEEEEeecC
Q 042573 347 SLENLIGAGSFGSVYKG--ILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 347 ~~~~~lg~g~fg~vy~g--~l~~g~~~~~vavK~l~~~ 382 (388)
+-+.-||+|.|.+|-.+ ++.+ ..||||.+.+-
T Consensus 21 DLekTlG~GHFAVVKLArHVFTG----ekVAVKviDKT 54 (864)
T KOG4717|consen 21 DLEKTLGRGHFAVVKLARHVFTG----EKVAVKVIDKT 54 (864)
T ss_pred hhhhhhcCCceehhhhhhhhccc----ceeEEEEeccc
Confidence 33456999999999766 4443 37999988654
No 237
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=39.50 E-value=38 Score=19.82 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=5.2
Q ss_pred ccccccEEEe
Q 042573 9 LSTRLGKLSV 18 (388)
Q Consensus 9 l~~~L~~L~l 18 (388)
+|.++++|.+
T Consensus 10 iP~~l~~L~~ 19 (44)
T PF05725_consen 10 IPSSLKSLIF 19 (44)
T ss_pred eCCCCeEEEE
Confidence 4444555555
No 238
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=38.92 E-value=25 Score=24.57 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhhc
Q 042573 300 LVTGMSCFIITSWQS 314 (388)
Q Consensus 300 ~~~~~~~~~~~~~~~ 314 (388)
+++++++++++++.|
T Consensus 53 LilIii~Lv~CC~~K 67 (98)
T PF07204_consen 53 LILIIIALVCCCRAK 67 (98)
T ss_pred hHHHHHHHHHHhhhh
Confidence 333333334343333
No 239
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=38.85 E-value=8.7 Score=34.65 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=24.6
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
|.-...+|+|.||.|..-.=+.- +..||||.++..
T Consensus 91 y~i~~~lGeGtFGkV~ec~D~~~--~~~vAlKIik~V 125 (415)
T KOG0671|consen 91 YEIVDLLGEGTFGKVVECWDRET--KEHVALKIIKNV 125 (415)
T ss_pred eehhhhhcCCcccceEEEeecCC--CceehHHHHHHH
Confidence 34446799999999977644322 348999988654
No 240
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=38.67 E-value=28 Score=28.13 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.6
Q ss_pred cceeehhhhH
Q 042573 287 SLKLIIPVVT 296 (388)
Q Consensus 287 ~~~~~~~i~~ 296 (388)
.+.+++++++
T Consensus 77 ~~~iivgvi~ 86 (179)
T PF13908_consen 77 ITGIIVGVIC 86 (179)
T ss_pred eeeeeeehhh
Confidence 3445554443
No 241
>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]
Probab=36.68 E-value=7.4 Score=36.57 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=28.4
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
.++|....++|+||||+|+.+....+. .--|||||.-
T Consensus 48 a~~~e~~~~~~~~g~~~~~~~~n~~d~--~~~avkritl 84 (516)
T KOG1033|consen 48 ANDFEPGQCLGRGGFGVVFSAQNKADE--NKYAVKRITL 84 (516)
T ss_pred hccccccccccccCccccCCccccccc--hhhHHHHhcc
Confidence 467888899999999999998774431 2469998853
No 242
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=35.41 E-value=96 Score=20.23 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=3.0
Q ss_pred HHHHhhcc
Q 042573 308 IITSWQSK 315 (388)
Q Consensus 308 ~~~~~~~~ 315 (388)
++..++|+
T Consensus 19 lY~iYnr~ 26 (68)
T PF05961_consen 19 LYGIYNRK 26 (68)
T ss_pred HHHHHhcc
Confidence 33333333
No 243
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=35.17 E-value=40 Score=29.16 Aligned_cols=25 Identities=12% Similarity=0.450 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcccC
Q 042573 293 PVVTVILLVTGMSCFIITSWQSKSK 317 (388)
Q Consensus 293 ~i~~~~~~~~~~~~~~~~~~~~~~~ 317 (388)
+|++.++++++++.++.+.|-.|||
T Consensus 262 giaalvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555566667888954444
No 244
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=33.95 E-value=58 Score=24.33 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=8.5
Q ss_pred CCcCCCCCCCCCCCCc
Q 042573 263 NLCGGISDLHLSTCSI 278 (388)
Q Consensus 263 ~~c~~~~~~~~~~c~~ 278 (388)
..|..........|..
T Consensus 67 ~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 67 MYCRCSHGYTGIRCQH 82 (139)
T ss_pred ceeECCCCcccccccc
Confidence 3455555555566654
No 245
>PTZ00370 STEVOR; Provisional
Probab=33.63 E-value=42 Score=29.06 Aligned_cols=25 Identities=16% Similarity=0.487 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcccC
Q 042573 293 PVVTVILLVTGMSCFIITSWQSKSK 317 (388)
Q Consensus 293 ~i~~~~~~~~~~~~~~~~~~~~~~~ 317 (388)
+|++.++++++++.++.+.|-.|||
T Consensus 258 giaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555566667888954444
No 246
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=33.23 E-value=50 Score=26.33 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=14.2
Q ss_pred ccceeehhhhHHHHHHHHHHHHHHHHhhcc
Q 042573 286 RSLKLIIPVVTVILLVTGMSCFIITSWQSK 315 (388)
Q Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (388)
....+|.+|+.++++.++-++--|+.+++|
T Consensus 112 ~~~g~IaGIvsav~valvGAvsSyiaYqkK 141 (169)
T PF12301_consen 112 AEAGTIAGIVSAVVVALVGAVSSYIAYQKK 141 (169)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 344666666655544433333334444443
No 247
>PF15345 TMEM51: Transmembrane protein 51
Probab=33.18 E-value=62 Score=27.10 Aligned_cols=8 Identities=38% Similarity=0.762 Sum_probs=5.1
Q ss_pred CHHHHHHh
Q 042573 335 SYENLFKA 342 (388)
Q Consensus 335 ~~~~l~~a 342 (388)
+|+|++..
T Consensus 126 SYEEvv~s 133 (233)
T PF15345_consen 126 SYEEVVNS 133 (233)
T ss_pred ChHHHHhc
Confidence 67776654
No 248
>PF15102 TMEM154: TMEM154 protein family
Probab=32.75 E-value=45 Score=25.70 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=6.4
Q ss_pred HHHHHhhcccC
Q 042573 307 FIITSWQSKSK 317 (388)
Q Consensus 307 ~~~~~~~~~~~ 317 (388)
+++.+||.|+.
T Consensus 80 ~~~kRkr~K~~ 90 (146)
T PF15102_consen 80 IYYKRKRTKQE 90 (146)
T ss_pred eEEeecccCCC
Confidence 34567776554
No 249
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.69 E-value=52 Score=31.11 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=24.2
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.+.||=|.|.+||.+-=.-+.+ .||+|..+..
T Consensus 83 ~rKLGWGHFSTVWLawDtq~~r--~VAlKVvKSA 114 (590)
T KOG1290|consen 83 QRKLGWGHFSTVWLAWDTQNKR--YVALKVVKSA 114 (590)
T ss_pred EEeccccccceeEEEeeccCCe--EEEEEEEehh
Confidence 4689999999999994432223 8999988754
No 250
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=30.64 E-value=11 Score=35.89 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.5
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
...||+||...|||..-.|. + .+|+|+....
T Consensus 366 lk~iG~GGSSkV~kV~~s~~-~--iyalkkv~~~ 396 (677)
T KOG0596|consen 366 LKQIGSGGSSKVFKVLNSDK-Q--IYALKKVVLL 396 (677)
T ss_pred HHhhcCCCcceeeeeecCCC-c--chhhhHHHHh
Confidence 35699999999999977665 3 6899887544
No 251
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=30.07 E-value=67 Score=22.89 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=7.6
Q ss_pred cccceeehhhhHHH
Q 042573 285 RRSLKLIIPVVTVI 298 (388)
Q Consensus 285 ~~~~~~~~~i~~~~ 298 (388)
...|...+++++++
T Consensus 14 g~sW~~LVGVv~~a 27 (102)
T PF15176_consen 14 GRSWPFLVGVVVTA 27 (102)
T ss_pred CcccHhHHHHHHHH
Confidence 34555566655444
No 252
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.90 E-value=33 Score=31.46 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=17.9
Q ss_pred cCCCcCceeecCCCceEEEEEe
Q 042573 344 DGFSLENLIGAGSFGSVYKGIL 365 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l 365 (388)
+.+.-.+.||+|+||.||.|+-
T Consensus 17 g~y~~~~~lG~GsfgkV~~a~~ 38 (370)
T KOG0583|consen 17 GKYELGRTLGSGSFGKVKLAKH 38 (370)
T ss_pred CceeeeeeecCCCCeeEEEeee
Confidence 4455568899999999999965
No 253
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=29.36 E-value=33 Score=27.95 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=3.5
Q ss_pred HHHHhhccc
Q 042573 308 IITSWQSKS 316 (388)
Q Consensus 308 ~~~~~~~~~ 316 (388)
+++.|.|++
T Consensus 177 ~~~~~~R~~ 185 (189)
T PF14610_consen 177 GFFFWNRKK 185 (189)
T ss_pred hhheeeccc
Confidence 333344433
No 254
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=28.90 E-value=72 Score=27.90 Aligned_cols=32 Identities=34% Similarity=0.373 Sum_probs=26.1
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecCCC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHG 384 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~ 384 (388)
+.||-|.=+.||.|..+.| . .+|||-=+.+++
T Consensus 97 ~~IGvGKEsdVY~~~~~~g-~--~~~vKfHR~Grt 128 (304)
T COG0478 97 TKIGVGKESDVYVAIDPKG-R--KVAVKFHRLGRT 128 (304)
T ss_pred cccccCccceEEEEECCCC-C--EEEEEEeecCch
Confidence 7899999999999999877 4 799996555444
No 255
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=28.68 E-value=1e+02 Score=25.59 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=9.3
Q ss_pred ccccceeehhhhHHH
Q 042573 284 SRRSLKLIIPVVTVI 298 (388)
Q Consensus 284 ~~~~~~~~~~i~~~~ 298 (388)
..-..+++.++++++
T Consensus 37 ~~I~iaiVAG~~tVI 51 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVI 51 (221)
T ss_pred eeeeeeeecchhhhH
Confidence 445566777776655
No 256
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=28.38 E-value=68 Score=24.68 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=4.6
Q ss_pred HHHHHHHHhhcc
Q 042573 304 MSCFIITSWQSK 315 (388)
Q Consensus 304 ~~~~~~~~~~~~ 315 (388)
+.+++.++..|+
T Consensus 137 i~CLiei~shr~ 148 (154)
T PF14914_consen 137 IFCLIEICSHRR 148 (154)
T ss_pred HHHHHHHHhccc
Confidence 333344443333
No 257
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=28.00 E-value=89 Score=27.40 Aligned_cols=27 Identities=4% Similarity=0.110 Sum_probs=11.6
Q ss_pred eeehhhhHHHHHHHHHHHHHHHHhhcc
Q 042573 289 KLIIPVVTVILLVTGMSCFIITSWQSK 315 (388)
Q Consensus 289 ~~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (388)
.|.++++.+.+++++++.+++.+.+||
T Consensus 231 lIslAiALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 231 LISLAIALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred EEehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444443333333
No 258
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=27.73 E-value=25 Score=37.39 Aligned_cols=37 Identities=35% Similarity=0.594 Sum_probs=27.7
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
+..|...+.||.|.||.||-|+=.+- |...|||-++-
T Consensus 1234 ~~rWqrg~~Ig~G~fG~VYtavN~~t--GellAvKEI~i 1270 (1509)
T KOG4645|consen 1234 TFRWQRGNFIGGGTFGKVYTAVNLDT--GELLAVKEIKI 1270 (1509)
T ss_pred eeeeccccccCCcceeeeEEeecCCc--cchhhhhhhhc
Confidence 45566678899999999999976442 33789996643
No 259
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.16 E-value=38 Score=39.19 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=27.9
Q ss_pred EeecCceeecCcccccCCCCCCEEECcCCccc
Q 042573 17 SVAENQLFGNIPSGLTNLVNLELLDLGDNQFT 48 (388)
Q Consensus 17 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 48 (388)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889999888888999999999999998775
No 260
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=27.10 E-value=37 Score=29.51 Aligned_cols=35 Identities=17% Similarity=0.400 Sum_probs=26.7
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
.|.-+..+|+|.||.+..++-++.. +.+|+|-...
T Consensus 25 ~y~I~k~lgeG~FgkIlL~eHr~s~--t~ivlKavp~ 59 (378)
T KOG1345|consen 25 VYTINKQLGEGRFGKILLAEHRQSK--TRIVLKAVPR 59 (378)
T ss_pred hhhHHHHhcccceeeEEeeeccCCc--eEEEeeccCc
Confidence 3455578999999999999887653 4899986644
No 261
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=26.93 E-value=56 Score=31.25 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=22.6
Q ss_pred eecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 352 IGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 352 lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.|+|=|+.|.+|.=... |+.||||.+...
T Consensus 440 ~GkGvFs~Vvra~D~~r--~~~vAiKIIRnN 468 (752)
T KOG0670|consen 440 TGKGVFSTVVRARDQAR--GQEVAIKIIRNN 468 (752)
T ss_pred cccceeeeeeeccccCC--CCeeEEEEeecc
Confidence 58899999999976432 338999999765
No 262
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=26.77 E-value=42 Score=28.83 Aligned_cols=17 Identities=24% Similarity=0.096 Sum_probs=14.5
Q ss_pred ceeecCCCceEEEEEeC
Q 042573 350 NLIGAGSFGSVYKGILT 366 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~ 366 (388)
..+|+|+||.||+++-.
T Consensus 22 ~~lg~g~~g~v~~~~~~ 38 (267)
T PHA03390 22 LKLIDGKFGKVSVLKHK 38 (267)
T ss_pred eeecCCCceEEEEEEEc
Confidence 34999999999999863
No 263
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=26.44 E-value=60 Score=28.19 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=9.5
Q ss_pred ccceeehhhhHHHHHHHHH
Q 042573 286 RSLKLIIPVVTVILLVTGM 304 (388)
Q Consensus 286 ~~~~~~~~i~~~~~~~~~~ 304 (388)
..|.+++++++++++++++
T Consensus 211 ~~W~iv~g~~~G~~~L~ll 229 (278)
T PF06697_consen 211 WWWKIVVGVVGGVVLLGLL 229 (278)
T ss_pred eeEEEEEEehHHHHHHHHH
Confidence 4556666655444443333
No 264
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=26.38 E-value=98 Score=23.73 Aligned_cols=12 Identities=8% Similarity=0.310 Sum_probs=5.8
Q ss_pred cceeehhhhHHH
Q 042573 287 SLKLIIPVVTVI 298 (388)
Q Consensus 287 ~~~~~~~i~~~~ 298 (388)
.+.|+++++.+.
T Consensus 63 IaGIVfgiVfim 74 (155)
T PF10873_consen 63 IAGIVFGIVFIM 74 (155)
T ss_pred eeeeehhhHHHH
Confidence 345555555444
No 265
>PHA03049 IMV membrane protein; Provisional
Probab=25.31 E-value=1.9e+02 Score=18.85 Aligned_cols=7 Identities=14% Similarity=0.216 Sum_probs=2.6
Q ss_pred HHHhhcc
Q 042573 309 ITSWQSK 315 (388)
Q Consensus 309 ~~~~~~~ 315 (388)
+..++|+
T Consensus 20 YgiYnkk 26 (68)
T PHA03049 20 YGIYNKK 26 (68)
T ss_pred HHHHhcc
Confidence 3333333
No 266
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=24.88 E-value=13 Score=31.30 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=24.4
Q ss_pred CceeecCCCceEEEEEe-CCCCceeEEEEEEeecCC
Q 042573 349 ENLIGAGSFGSVYKGIL-THDDHETLVAVKVLNLEH 383 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l-~~g~~~~~vavK~l~~~~ 383 (388)
.+.+|+|.+++|+-|.= .+. + -++||.|+...
T Consensus 43 vrk~GRGKYSEVFeg~~~~~~-e--K~ViKiLKPVk 75 (338)
T KOG0668|consen 43 VRKVGRGKYSEVFEGINITNN-E--KCVIKILKPVK 75 (338)
T ss_pred HHHHcCccHhhHhcccccCCC-c--eEEEeeechHH
Confidence 36799999999999973 222 3 68999998654
No 267
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=24.13 E-value=59 Score=30.21 Aligned_cols=9 Identities=22% Similarity=0.043 Sum_probs=3.4
Q ss_pred ccceeehhh
Q 042573 286 RSLKLIIPV 294 (388)
Q Consensus 286 ~~~~~~~~i 294 (388)
.....|.+|
T Consensus 364 LstgaIaGI 372 (397)
T PF03302_consen 364 LSTGAIAGI 372 (397)
T ss_pred ccccceeee
Confidence 333333333
No 268
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.86 E-value=8 Score=32.91 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=20.0
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEe
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVL 379 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l 379 (388)
.+||+|.||+|++|+-.++.. .+-..|++
T Consensus 23 ~kigqGtfgeVFkAr~~n~~k-kvalkkvl 51 (376)
T KOG0669|consen 23 AKIGQGTFGEVFKARSKNTGK-KVALKKVL 51 (376)
T ss_pred HhcCCchHHHHHHHhhcCccc-hhHHHHHH
Confidence 569999999999998855422 24444444
No 269
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=22.98 E-value=46 Score=25.62 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=3.7
Q ss_pred HHHHHHHHhh
Q 042573 304 MSCFIITSWQ 313 (388)
Q Consensus 304 ~~~~~~~~~~ 313 (388)
+++.+.+.|.
T Consensus 23 l~cgiGcvwh 32 (158)
T PF11770_consen 23 LLCGIGCVWH 32 (158)
T ss_pred HHHhcceEEE
Confidence 3333333343
No 270
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=22.69 E-value=38 Score=32.80 Aligned_cols=17 Identities=35% Similarity=0.808 Sum_probs=14.7
Q ss_pred CceeecCCCceEEEEEe
Q 042573 349 ENLIGAGSFGSVYKGIL 365 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l 365 (388)
..+||+|+|-+||||.=
T Consensus 45 ~evLGrGafKtVYka~D 61 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAFD 61 (632)
T ss_pred hhhcccccceeeeeccc
Confidence 46799999999999944
No 271
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=22.09 E-value=38 Score=30.17 Aligned_cols=40 Identities=28% Similarity=0.601 Sum_probs=26.6
Q ss_pred CHHHHHHhhcCCCcCceeecCCCceEEEEE-eCCCCceeEEEEEEeecC
Q 042573 335 SYENLFKATDGFSLENLIGAGSFGSVYKGI-LTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 335 ~~~~l~~at~~f~~~~~lg~g~fg~vy~g~-l~~g~~~~~vavK~l~~~ 382 (388)
+++|+-+-|. .+||+|+++.|--.+ +..| ..-|||.+.+.
T Consensus 74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~---~EYAVKiidKq 114 (463)
T KOG0607|consen 74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTG---KEYAVKIIDKQ 114 (463)
T ss_pred hHHHHHHhHH-----HHhcCccceeeeeeeeeccc---hhhhhhhhhcC
Confidence 3455555553 679999999986543 2333 26899998765
No 272
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=21.53 E-value=89 Score=26.01 Aligned_cols=10 Identities=40% Similarity=0.614 Sum_probs=4.7
Q ss_pred EEEEEEeecC
Q 042573 373 LVAVKVLNLE 382 (388)
Q Consensus 373 ~vavK~l~~~ 382 (388)
.+.||.+..+
T Consensus 238 lltvkt~s~e 247 (259)
T PF07010_consen 238 LLTVKTISHE 247 (259)
T ss_pred EEEEEecccC
Confidence 3455555443
No 273
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=20.28 E-value=34 Score=32.14 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=0.0
Q ss_pred cceeehhhhHHH
Q 042573 287 SLKLIIPVVTVI 298 (388)
Q Consensus 287 ~~~~~~~i~~~~ 298 (388)
...+++++++++
T Consensus 354 ~l~vVlgvavli 365 (439)
T PF02480_consen 354 LLGVVLGVAVLI 365 (439)
T ss_dssp ------------
T ss_pred hHHHHHHHHHHH
Confidence 335555555444
No 274
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=20.24 E-value=91 Score=22.00 Aligned_cols=20 Identities=35% Similarity=0.775 Sum_probs=14.0
Q ss_pred eecC-CCceEEEEEeCCCCceeEEEE
Q 042573 352 IGAG-SFGSVYKGILTHDDHETLVAV 376 (388)
Q Consensus 352 lg~g-~fg~vy~g~l~~g~~~~~vav 376 (388)
-|+| .-|+||| +.+| . .|-|
T Consensus 70 ~G~G~~~G~aYr--l~~G-k--~I~V 90 (92)
T PF09919_consen 70 SGSGERLGTAYR--LKDG-K--LIYV 90 (92)
T ss_pred CCCCeECeEEEE--cCCc-e--EEEe
Confidence 3556 6799999 8777 3 5554
Done!