Query 042573
Match_columns 388
No_of_seqs 316 out of 4276
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 12:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.5E-37 1.2E-41 306.2 24.4 273 2-280 410-752 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 8.1E-37 2.8E-41 271.7 18.7 255 12-269 51-309 (313)
3 3rgz_A Protein brassinosteroid 100.0 1.1E-33 3.7E-38 281.1 23.1 256 13-270 396-722 (768)
4 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-34 6.5E-39 256.4 14.0 239 2-245 68-308 (313)
5 3v47_A TOLL-like receptor 5B a 100.0 1.9E-32 6.6E-37 256.8 22.1 87 157-243 276-362 (455)
6 2id5_A Lingo-1, leucine rich r 100.0 1E-32 3.5E-37 260.2 19.3 260 4-265 50-334 (477)
7 3zyi_A Leucine-rich repeat-con 100.0 1.3E-31 4.5E-36 250.6 22.4 240 2-247 69-309 (452)
8 3v47_A TOLL-like receptor 5B a 100.0 9.3E-32 3.2E-36 252.1 20.3 263 3-267 47-411 (455)
9 3zyj_A Leucine-rich repeat-con 100.0 2.1E-31 7.3E-36 248.3 22.3 240 2-247 58-298 (440)
10 2z66_A Variable lymphocyte rec 100.0 1.5E-32 5.3E-37 243.8 13.5 264 2-270 22-293 (306)
11 2id5_A Lingo-1, leucine rich r 100.0 1.8E-31 6.2E-36 251.6 20.8 257 2-262 26-307 (477)
12 1ozn_A Reticulon 4 receptor; N 100.0 2E-31 7E-36 234.0 18.6 253 14-270 14-267 (285)
13 3t6q_A CD180 antigen; protein- 100.0 6.6E-31 2.2E-35 255.2 20.7 261 2-265 293-561 (606)
14 3o6n_A APL1; leucine-rich repe 100.0 5.2E-30 1.8E-34 235.3 23.7 256 2-265 60-353 (390)
15 3oja_B Anopheles plasmodium-re 100.0 5.3E-30 1.8E-34 247.7 23.8 257 2-266 66-360 (597)
16 4fcg_A Uncharacterized protein 100.0 3.8E-30 1.3E-34 230.0 18.9 224 12-241 82-314 (328)
17 1xku_A Decorin; proteoglycan, 100.0 2.3E-29 7.7E-34 225.8 23.8 248 11-266 52-308 (330)
18 2z80_A TOLL-like receptor 2, v 100.0 3.3E-31 1.1E-35 240.0 11.3 259 2-265 46-315 (353)
19 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-29 7.8E-34 225.9 21.8 246 12-266 55-309 (332)
20 1ozn_A Reticulon 4 receptor; N 100.0 4.9E-30 1.7E-34 225.2 16.7 235 10-246 31-266 (285)
21 4eco_A Uncharacterized protein 100.0 1.7E-30 6E-35 252.5 14.5 255 2-263 198-500 (636)
22 3t6q_A CD180 antigen; protein- 100.0 1.4E-29 4.8E-34 245.8 20.4 241 3-246 318-565 (606)
23 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-29 4.2E-34 254.5 19.0 250 12-266 267-562 (844)
24 3zyi_A Leucine-rich repeat-con 100.0 6.6E-29 2.3E-33 232.3 22.2 249 13-267 56-306 (452)
25 4eco_A Uncharacterized protein 100.0 2.7E-29 9.3E-34 244.1 20.2 226 2-235 291-543 (636)
26 3zyj_A Leucine-rich repeat-con 100.0 7.2E-29 2.5E-33 231.2 22.2 250 12-267 44-295 (440)
27 1xku_A Decorin; proteoglycan, 100.0 6.5E-29 2.2E-33 222.8 21.1 230 4-242 70-307 (330)
28 3oja_B Anopheles plasmodium-re 100.0 1.4E-29 4.8E-34 244.7 17.5 264 3-276 92-392 (597)
29 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-28 5.5E-33 239.6 25.0 95 172-266 486-582 (635)
30 1ziw_A TOLL-like receptor 3; i 100.0 5.9E-29 2E-33 244.6 21.9 260 5-266 324-624 (680)
31 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-29 1.4E-33 242.5 19.8 254 5-266 302-560 (606)
32 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-29 1.5E-33 242.4 19.9 232 8-245 326-562 (606)
33 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-28 4.4E-33 221.0 20.6 249 3-261 71-330 (332)
34 3o6n_A APL1; leucine-rich repe 100.0 1E-28 3.5E-33 226.7 20.0 245 8-261 43-305 (390)
35 2z66_A Variable lymphocyte rec 100.0 8.8E-29 3E-33 219.5 18.5 249 13-266 9-263 (306)
36 4fcg_A Uncharacterized protein 100.0 5.5E-29 1.9E-33 222.5 16.9 212 1-218 95-315 (328)
37 1ziw_A TOLL-like receptor 3; i 100.0 5.6E-28 1.9E-32 237.6 24.6 232 5-238 44-306 (680)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.7E-28 1.6E-32 232.7 22.6 131 129-262 351-484 (562)
39 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-28 8.9E-33 244.9 21.6 119 5-124 43-165 (844)
40 2z62_A TOLL-like receptor 4, v 100.0 8E-28 2.7E-32 210.1 20.7 229 15-248 11-244 (276)
41 2z7x_B TOLL-like receptor 1, v 100.0 6.5E-28 2.2E-32 229.8 21.6 251 4-262 39-455 (520)
42 4g8a_A TOLL-like receptor 4; l 100.0 3.5E-28 1.2E-32 237.2 19.2 98 149-246 487-585 (635)
43 1wwl_A Monocyte differentiatio 100.0 2.3E-29 7.8E-34 223.7 9.8 231 2-242 57-310 (312)
44 4ecn_A Leucine-rich repeat pro 100.0 1.4E-28 4.6E-33 243.8 16.3 253 2-262 440-739 (876)
45 4ecn_A Leucine-rich repeat pro 100.0 1.3E-28 4.3E-33 244.0 15.5 189 51-245 440-661 (876)
46 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-28 1.3E-32 231.4 17.9 114 2-121 15-129 (520)
47 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8E-28 2.7E-32 231.1 20.1 114 2-121 46-160 (562)
48 3oja_A Leucine-rich immune mol 100.0 6.8E-29 2.3E-33 233.5 10.9 227 2-243 22-252 (487)
49 2z81_A CD282 antigen, TOLL-lik 100.0 5.8E-28 2E-32 231.7 17.4 257 2-262 20-421 (549)
50 2z80_A TOLL-like receptor 2, v 100.0 2.4E-28 8.1E-33 221.2 12.9 251 8-263 29-289 (353)
51 2o6q_A Variable lymphocyte rec 100.0 1.4E-26 4.7E-31 201.5 22.6 206 37-246 18-223 (270)
52 2z62_A TOLL-like receptor 4, v 100.0 5.3E-27 1.8E-31 204.9 19.0 214 2-220 22-240 (276)
53 2z63_A TOLL-like receptor 4, v 99.9 2.5E-27 8.6E-32 228.3 18.0 255 2-266 274-533 (570)
54 4fmz_A Internalin; leucine ric 99.9 1.3E-26 4.4E-31 209.4 20.9 238 6-262 84-322 (347)
55 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-27 3.7E-32 213.4 12.9 215 13-242 36-251 (317)
56 2z63_A TOLL-like receptor 4, v 99.9 1.2E-26 4.3E-31 223.5 19.9 184 2-190 22-210 (570)
57 1p9a_G Platelet glycoprotein I 99.9 3.8E-26 1.3E-30 200.4 20.1 207 31-245 6-212 (290)
58 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-27 6.3E-32 211.9 11.9 240 13-266 12-252 (317)
59 3oja_A Leucine-rich immune mol 99.9 6.2E-27 2.1E-31 220.2 15.2 222 33-268 32-254 (487)
60 2z81_A CD282 antigen, TOLL-lik 99.9 7.1E-27 2.4E-31 224.2 14.9 236 3-241 43-423 (549)
61 2o6q_A Variable lymphocyte rec 99.9 1.5E-25 5.2E-30 194.8 21.4 208 8-219 13-220 (270)
62 4fmz_A Internalin; leucine ric 99.9 1.7E-25 5.8E-30 202.0 22.3 234 8-261 42-275 (347)
63 1wwl_A Monocyte differentiatio 99.9 1.3E-26 4.5E-31 205.9 12.6 204 8-219 93-311 (312)
64 1o6v_A Internalin A; bacterial 99.9 2.3E-25 7.7E-30 209.1 21.1 239 6-261 64-341 (466)
65 1o6v_A Internalin A; bacterial 99.9 3E-25 1E-29 208.2 21.0 217 8-242 44-279 (466)
66 3rfs_A Internalin B, repeat mo 99.9 1.5E-25 5.3E-30 195.0 15.2 220 13-246 21-240 (272)
67 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-24 4.8E-29 202.4 22.7 213 4-243 36-248 (457)
68 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-24 8.7E-29 200.6 23.2 235 2-263 57-298 (457)
69 3rfs_A Internalin B, repeat mo 99.9 1E-25 3.4E-30 196.2 12.8 204 36-246 20-223 (272)
70 1p9a_G Platelet glycoprotein I 99.9 8.6E-25 2.9E-29 191.7 18.8 204 6-218 6-209 (290)
71 2xwt_C Thyrotropin receptor; s 99.9 4.7E-25 1.6E-29 188.3 14.7 198 35-239 31-237 (239)
72 2ca6_A RAN GTPase-activating p 99.9 1.8E-26 6.2E-31 211.4 3.1 241 2-244 24-319 (386)
73 2xwt_C Thyrotropin receptor; s 99.9 1.6E-24 5.3E-29 185.0 14.6 196 12-214 32-236 (239)
74 4glp_A Monocyte differentiatio 99.9 1E-24 3.5E-29 193.5 12.2 224 13-242 66-308 (310)
75 3m19_A Variable lymphocyte rec 99.9 2.9E-23 1E-27 178.4 19.2 180 36-243 15-194 (251)
76 4glp_A Monocyte differentiatio 99.9 6.2E-24 2.1E-28 188.5 15.1 202 9-218 90-308 (310)
77 1h6u_A Internalin H; cell adhe 99.9 1.3E-23 4.6E-28 186.0 15.2 209 15-242 23-231 (308)
78 3m19_A Variable lymphocyte rec 99.9 9E-23 3.1E-27 175.4 19.0 180 12-219 15-194 (251)
79 1h6u_A Internalin H; cell adhe 99.9 3.3E-23 1.1E-27 183.4 15.4 196 6-219 37-232 (308)
80 2ast_B S-phase kinase-associat 99.9 7.5E-25 2.6E-29 196.9 2.8 223 11-238 47-282 (336)
81 3goz_A Leucine-rich repeat-con 99.9 1E-24 3.6E-29 197.8 2.2 104 17-120 4-122 (362)
82 3g06_A SSPH2 (leucine-rich rep 99.9 4.9E-22 1.7E-26 190.8 20.6 212 2-244 55-300 (622)
83 1jl5_A Outer protein YOPM; leu 99.9 1.9E-22 6.5E-27 187.8 16.3 234 1-262 25-288 (454)
84 2ast_B S-phase kinase-associat 99.9 1.3E-23 4.5E-28 188.8 7.0 236 5-246 63-311 (336)
85 3goz_A Leucine-rich repeat-con 99.9 4E-24 1.4E-28 193.9 3.1 237 6-243 17-299 (362)
86 4ay9_X Follicle-stimulating ho 99.9 4.9E-22 1.7E-26 179.3 16.7 237 14-258 12-253 (350)
87 1jl5_A Outer protein YOPM; leu 99.9 3.5E-22 1.2E-26 186.1 13.7 232 3-262 5-268 (454)
88 2o6s_A Variable lymphocyte rec 99.9 2.6E-21 8.9E-26 161.4 17.1 182 13-205 9-190 (208)
89 2ca6_A RAN GTPase-activating p 99.9 2.6E-24 8.9E-29 197.0 -1.4 236 26-262 23-314 (386)
90 4ay9_X Follicle-stimulating ho 99.9 2.1E-21 7.1E-26 175.1 17.4 231 1-239 23-257 (350)
91 1z7x_W Ribonuclease inhibitor; 99.9 9E-25 3.1E-29 205.0 -5.6 250 12-262 86-381 (461)
92 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-20 4.3E-25 181.0 21.5 222 12-263 41-296 (622)
93 2o6s_A Variable lymphocyte rec 99.9 2E-21 6.9E-26 162.0 13.6 164 10-181 27-190 (208)
94 1z7x_W Ribonuclease inhibitor; 99.9 8.9E-24 3E-28 198.2 -2.0 259 2-262 105-409 (461)
95 2v9t_B SLIT homolog 2 protein 99.9 1.9E-21 6.7E-26 163.3 11.6 157 62-246 14-170 (220)
96 3cvr_A Invasion plasmid antige 99.9 6.9E-21 2.4E-25 180.6 16.7 187 12-227 60-253 (571)
97 2xot_A Amphoterin-induced prot 99.9 5.1E-21 1.7E-25 173.3 13.8 181 38-246 21-207 (361)
98 2v70_A SLIT-2, SLIT homolog 2 99.9 2.9E-21 9.9E-26 162.2 11.2 138 109-247 34-172 (220)
99 3cvr_A Invasion plasmid antige 99.8 8.1E-20 2.8E-24 173.3 18.3 181 36-245 60-247 (571)
100 2xot_A Amphoterin-induced prot 99.8 3.7E-20 1.3E-24 167.6 15.0 177 13-193 20-202 (361)
101 1m9s_A Internalin B; cell inva 99.8 7.8E-21 2.7E-25 182.2 10.5 190 13-219 23-212 (605)
102 2v9t_B SLIT homolog 2 protein 99.8 1.1E-19 3.9E-24 152.5 15.8 153 13-169 13-165 (220)
103 1h6t_A Internalin B; cell adhe 99.8 2.7E-20 9.2E-25 163.2 12.3 191 13-220 26-216 (291)
104 1h6t_A Internalin B; cell adhe 99.8 6.3E-20 2.1E-24 160.9 14.2 190 36-242 25-214 (291)
105 3e6j_A Variable lymphocyte rec 99.8 1.8E-19 6.3E-24 152.3 15.7 156 61-245 21-176 (229)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-19 6.3E-24 151.2 14.7 154 13-170 13-167 (220)
107 1m9s_A Internalin B; cell inva 99.8 1.6E-19 5.4E-24 173.2 14.9 175 6-196 39-213 (605)
108 3e6j_A Variable lymphocyte rec 99.8 6.4E-19 2.2E-23 148.9 16.8 153 13-170 21-173 (229)
109 4ezg_A Putative uncharacterize 99.8 4.8E-19 1.6E-23 146.2 13.5 153 32-193 41-194 (197)
110 4ezg_A Putative uncharacterize 99.8 9.9E-19 3.4E-23 144.2 12.3 153 56-217 41-194 (197)
111 1xeu_A Internalin C; cellular 99.8 4.7E-19 1.6E-23 152.9 9.8 167 13-219 21-187 (263)
112 1w8a_A SLIT protein; signaling 99.8 5.6E-19 1.9E-23 145.0 9.5 133 86-245 11-143 (192)
113 1dce_A Protein (RAB geranylger 99.8 1.2E-21 4.2E-26 186.7 -9.0 180 32-219 346-548 (567)
114 1xeu_A Internalin C; cellular 99.8 1.2E-18 4.1E-23 150.4 8.7 171 33-243 17-187 (263)
115 3sb4_A Hypothetical leucine ri 99.8 2.4E-18 8.1E-23 153.8 10.7 99 9-115 48-156 (329)
116 4b8c_D Glucose-repressible alc 99.8 8.9E-19 3.1E-23 172.0 7.9 217 13-242 175-405 (727)
117 2wfh_A SLIT homolog 2 protein 99.7 4.7E-18 1.6E-22 139.4 9.8 131 111-246 14-144 (193)
118 1dce_A Protein (RAB geranylger 99.7 4.1E-21 1.4E-25 183.1 -10.6 184 56-247 346-552 (567)
119 1w8a_A SLIT protein; signaling 99.7 3.7E-17 1.3E-21 134.1 13.2 174 62-267 11-186 (192)
120 4b8c_D Glucose-repressible alc 99.7 1.3E-18 4.5E-23 170.9 3.7 181 26-217 215-404 (727)
121 3sb4_A Hypothetical leucine ri 99.7 1.6E-17 5.5E-22 148.4 9.1 225 9-243 24-312 (329)
122 2ell_A Acidic leucine-rich nuc 99.7 4.2E-17 1.4E-21 130.9 9.4 132 35-169 24-160 (168)
123 3ogk_B Coronatine-insensitive 99.7 4.6E-19 1.6E-23 171.4 -2.6 238 2-242 235-527 (592)
124 4fdw_A Leucine rich hypothetic 99.7 1.1E-15 3.9E-20 139.4 18.3 217 13-241 137-358 (401)
125 2ell_A Acidic leucine-rich nuc 99.7 2.4E-16 8.1E-21 126.5 11.9 133 58-193 23-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.7 6.1E-17 2.1E-21 127.2 7.7 107 12-120 18-126 (149)
127 3ogk_B Coronatine-insensitive 99.7 4.8E-18 1.6E-22 164.3 1.2 133 102-236 265-411 (592)
128 2o6r_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 126.1 12.1 111 135-245 31-141 (177)
129 2je0_A Acidic leucine-rich nuc 99.7 3.5E-16 1.2E-20 122.8 11.1 127 59-188 17-148 (149)
130 4fdw_A Leucine rich hypothetic 99.7 1.7E-15 5.8E-20 138.2 17.1 220 12-241 158-383 (401)
131 2wfh_A SLIT homolog 2 protein 99.7 8.8E-16 3E-20 125.9 13.4 127 14-169 13-139 (193)
132 2o6r_A Variable lymphocyte rec 99.6 2.5E-15 8.7E-20 121.5 13.7 130 13-170 9-138 (177)
133 1a9n_A U2A', U2A'; complex (nu 99.6 1.7E-15 5.7E-20 122.4 9.0 109 31-145 15-126 (176)
134 2p1m_B Transport inhibitor res 99.6 1.9E-17 6.4E-22 160.2 -5.7 177 8-188 182-405 (594)
135 1a9n_A U2A', U2A'; complex (nu 99.6 1.2E-14 4.1E-19 117.4 10.4 133 54-193 14-153 (176)
136 2p1m_B Transport inhibitor res 99.6 2E-16 6.9E-21 152.9 -0.4 109 8-117 103-221 (594)
137 3g39_A Variable lymphocyte rec 99.6 2.1E-14 7.1E-19 115.1 10.6 108 135-245 12-119 (170)
138 3g39_A Variable lymphocyte rec 99.5 3.9E-14 1.3E-18 113.5 11.7 108 12-122 10-117 (170)
139 1ds9_A Outer arm dynein; leuci 99.5 4.5E-17 1.5E-21 134.4 -6.2 133 33-171 16-155 (198)
140 1ds9_A Outer arm dynein; leuci 99.5 9.9E-17 3.4E-21 132.3 -4.6 132 102-241 43-185 (198)
141 2r9u_A Variable lymphocyte rec 99.5 5.6E-14 1.9E-18 113.0 10.7 108 135-245 15-122 (174)
142 2r9u_A Variable lymphocyte rec 99.5 9E-14 3.1E-18 111.8 11.8 105 13-120 14-118 (174)
143 2ifg_A High affinity nerve gro 99.4 1.9E-12 6.6E-17 116.3 9.7 92 152-244 27-119 (347)
144 2ifg_A High affinity nerve gro 99.3 4E-12 1.4E-16 114.2 10.2 106 13-121 10-117 (347)
145 3un9_A NLR family member X1; l 99.3 2.2E-14 7.4E-19 129.7 -6.1 158 59-217 101-283 (372)
146 3un9_A NLR family member X1; l 99.3 1.4E-13 4.9E-18 124.3 -2.3 161 82-243 71-254 (372)
147 4gt6_A Cell surface protein; l 99.3 2.8E-10 9.6E-15 104.0 18.7 106 6-114 59-167 (394)
148 4fs7_A Uncharacterized protein 99.2 3.3E-10 1.1E-14 103.5 16.8 201 27-237 154-375 (394)
149 4fs7_A Uncharacterized protein 99.2 5.3E-10 1.8E-14 102.1 16.2 109 5-117 66-195 (394)
150 4gt6_A Cell surface protein; l 99.1 1E-09 3.5E-14 100.2 16.0 229 5-241 82-370 (394)
151 2ra8_A Uncharacterized protein 99.1 3.6E-11 1.2E-15 107.7 4.5 84 154-239 250-341 (362)
152 2ra8_A Uncharacterized protein 99.1 6E-11 2.1E-15 106.3 3.6 83 130-215 251-341 (362)
153 4h09_A Hypothetical leucine ri 98.9 6.3E-08 2.2E-12 87.8 18.8 217 12-237 47-319 (379)
154 4h09_A Hypothetical leucine ri 98.7 3.8E-07 1.3E-11 82.7 17.0 216 13-238 93-343 (379)
155 3rw6_A Nuclear RNA export fact 98.6 5.1E-09 1.8E-13 89.0 -0.1 63 58-121 169-234 (267)
156 1io0_A Tropomodulin; LRR prote 98.6 2.9E-09 9.9E-14 86.2 -1.9 117 28-145 29-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 5.6E-08 1.9E-12 82.6 1.7 64 154-218 168-234 (267)
158 1io0_A Tropomodulin; LRR prote 98.4 9E-08 3.1E-12 77.3 2.2 88 154-241 63-164 (185)
159 3e4g_A ATP synthase subunit S, 98.3 1.1E-07 3.6E-12 75.1 1.0 83 36-118 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 3.5E-07 1.2E-11 72.1 1.3 81 135-215 64-150 (176)
161 3rfe_A Platelet glycoprotein I 97.9 2.8E-05 9.5E-10 58.4 6.5 62 183-246 11-73 (130)
162 2nru_A Interleukin-1 receptor- 97.7 5.5E-05 1.9E-09 66.1 7.1 49 330-382 11-65 (307)
163 3uim_A Brassinosteroid insensi 97.7 2.6E-05 9E-10 68.8 4.8 53 329-384 15-67 (326)
164 4gt4_A Tyrosine-protein kinase 97.7 2.1E-05 7.3E-10 68.6 4.0 34 350-383 32-68 (308)
165 4aoj_A High affinity nerve gro 97.6 3E-05 1E-09 68.4 3.5 38 345-382 42-82 (329)
166 4aw2_A Serine/threonine-protei 97.4 6.9E-05 2.4E-09 68.9 2.7 46 334-381 64-109 (437)
167 3omv_A RAF proto-oncogene seri 97.3 0.00012 4.2E-09 63.6 3.6 35 344-383 36-70 (307)
168 2qkw_B Protein kinase; three-h 97.3 9.4E-05 3.2E-09 65.1 2.4 48 333-383 28-75 (321)
169 2c30_A Serine/threonine-protei 97.2 0.00033 1.1E-08 61.6 5.0 50 331-383 22-82 (321)
170 1pgv_A TMD-1, tropomodulin TMD 97.2 5.8E-05 2E-09 60.6 0.0 112 31-143 37-168 (197)
171 4ase_A Vascular endothelial gr 97.1 0.00025 8.4E-09 63.1 3.5 47 338-384 58-107 (353)
172 4f9c_A Cell division cycle 7-r 97.0 0.00044 1.5E-08 61.8 4.4 40 342-382 19-60 (361)
173 3rfe_A Platelet glycoprotein I 96.9 0.0012 4.3E-08 49.3 5.5 37 60-96 32-68 (130)
174 4fih_A Serine/threonine-protei 96.9 0.00054 1.9E-08 60.5 3.9 37 345-383 75-111 (346)
175 3fpq_A Serine/threonine-protei 96.9 0.00068 2.3E-08 58.4 4.4 33 349-383 31-63 (290)
176 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0005 1.7E-08 55.1 3.2 84 156-239 70-168 (197)
177 3p1a_A MYT1 kinase, membrane-a 96.9 0.0002 6.9E-09 62.7 0.5 37 344-382 57-93 (311)
178 4fie_A Serine/threonine-protei 96.8 0.00094 3.2E-08 60.6 4.6 39 344-384 151-189 (423)
179 4g3f_A NF-kappa-beta-inducing 96.8 0.00053 1.8E-08 60.3 2.5 38 344-383 58-95 (336)
180 3ubd_A Ribosomal protein S6 ki 96.7 0.0007 2.4E-08 58.7 2.7 38 345-382 25-63 (304)
181 3pg1_A Mitogen-activated prote 96.7 0.0014 4.8E-08 58.6 4.7 47 334-383 12-58 (362)
182 3kul_A Ephrin type-A receptor 96.7 0.0018 6.1E-08 57.0 5.3 50 333-382 29-88 (325)
183 4b9d_A Serine/threonine-protei 96.7 0.00096 3.3E-08 59.0 3.4 37 345-383 25-61 (350)
184 4b99_A Mitogen-activated prote 96.6 0.0015 5.1E-08 59.1 4.1 36 345-382 55-90 (398)
185 4aw0_A HPDK1, 3-phosphoinositi 96.6 0.001 3.4E-08 57.9 2.7 37 344-382 32-68 (311)
186 2vd5_A DMPK protein; serine/th 96.5 0.00091 3.1E-08 61.0 2.5 46 334-381 51-96 (412)
187 3vhe_A Vascular endothelial gr 96.5 0.0014 4.9E-08 58.4 3.8 50 334-383 12-64 (359)
188 3v8s_A RHO-associated protein 96.5 0.0013 4.3E-08 59.9 2.9 45 335-381 60-104 (410)
189 3dzo_A Rhoptry kinase domain; 96.4 0.0012 4.1E-08 60.2 2.2 38 341-381 75-113 (413)
190 3e3p_A Protein kinase, putativ 96.3 0.0023 8E-08 57.0 3.8 45 337-383 16-60 (360)
191 1mqb_A Ephrin type-A receptor 96.2 0.0047 1.6E-07 54.4 5.0 50 334-383 25-85 (333)
192 1qcf_A Haematopoetic cell kina 96.2 0.0029 9.8E-08 58.5 3.7 40 341-383 185-224 (454)
193 1zar_A RIO2 kinase; serine kin 96.2 0.0048 1.7E-07 53.0 4.8 45 336-383 82-126 (282)
194 4dc2_A Protein kinase C IOTA t 96.1 0.003 1E-07 57.1 3.6 38 344-383 52-89 (396)
195 3llt_A Serine/threonine kinase 96.1 0.0017 5.8E-08 58.0 1.8 50 330-381 21-70 (360)
196 3v5w_A G-protein coupled recep 96.1 0.0027 9.1E-08 61.0 3.2 37 344-382 189-225 (689)
197 3soc_A Activin receptor type-2 96.1 0.0022 7.5E-08 56.3 2.4 35 344-382 24-58 (322)
198 2clq_A Mitogen-activated prote 96.0 0.0074 2.5E-07 51.9 5.4 37 345-383 23-59 (295)
199 3niz_A Rhodanese family protei 96.0 0.0034 1.2E-07 54.7 3.1 36 345-383 22-57 (311)
200 1luf_A Muscle-specific tyrosin 96.0 0.0034 1.2E-07 55.5 3.1 45 339-383 42-89 (343)
201 2w4o_A Calcium/calmodulin-depe 96.0 0.005 1.7E-07 54.7 4.1 38 343-382 52-89 (349)
202 2x7f_A TRAF2 and NCK-interacti 96.0 0.002 6.7E-08 56.6 1.5 50 332-383 12-61 (326)
203 3rgf_A Cyclin-dependent kinase 96.0 0.0047 1.6E-07 56.1 4.0 34 349-382 26-59 (405)
204 1j1b_A Glycogen synthase kinas 96.0 0.0045 1.5E-07 56.6 3.8 36 346-383 56-91 (420)
205 3l9p_A Anaplastic lymphoma kin 95.9 0.0036 1.2E-07 56.1 3.0 39 344-382 71-112 (367)
206 2qol_A Ephrin receptor; recept 95.9 0.004 1.4E-07 55.9 3.3 40 344-383 45-85 (373)
207 2xir_A Vascular endothelial gr 95.9 0.005 1.7E-07 53.6 3.8 50 334-383 17-69 (316)
208 4f0f_A Serine/threonine-protei 95.9 0.0054 1.8E-07 52.6 3.9 38 344-383 19-56 (287)
209 4fl3_A Tyrosine-protein kinase 95.9 0.005 1.7E-07 59.4 4.0 34 350-383 375-408 (635)
210 2r5t_A Serine/threonine-protei 95.8 0.0049 1.7E-07 55.3 3.5 37 344-382 38-74 (373)
211 3an0_A Dual specificity mitoge 95.8 0.0064 2.2E-07 53.6 4.2 40 342-383 49-88 (340)
212 1rjb_A FL cytokine receptor; k 95.8 0.0054 1.9E-07 54.2 3.7 40 342-382 43-86 (344)
213 1fmk_A C-SRC, P60-SRC, tyrosin 95.8 0.0051 1.8E-07 56.8 3.6 38 343-383 183-220 (452)
214 3p86_A Serine/threonine-protei 95.8 0.005 1.7E-07 53.7 3.2 37 343-383 36-72 (309)
215 3cbl_A C-FES, proto-oncogene t 95.8 0.0045 1.5E-07 55.7 2.9 37 344-382 114-150 (377)
216 3byv_A Rhoptry kinase; malaria 95.8 0.0044 1.5E-07 55.7 2.8 36 344-382 73-109 (377)
217 3gen_A Tyrosine-protein kinase 95.8 0.0046 1.6E-07 52.9 2.9 37 344-383 24-60 (283)
218 2vuw_A Serine/threonine-protei 95.8 0.0034 1.2E-07 55.4 2.1 35 345-383 21-55 (336)
219 3aln_A Dual specificity mitoge 95.8 0.0083 2.8E-07 52.6 4.6 37 344-382 22-58 (327)
220 1xbb_A Tyrosine-protein kinase 95.7 0.0086 2.9E-07 51.5 4.6 39 345-383 17-56 (291)
221 2zmd_A Dual specificity protei 95.7 0.0056 1.9E-07 55.3 3.4 36 345-383 57-92 (390)
222 2ozo_A Tyrosine-protein kinase 95.7 0.0098 3.3E-07 57.2 5.3 33 351-383 343-375 (613)
223 3txo_A PKC-L, NPKC-ETA, protei 95.7 0.0052 1.8E-07 54.7 3.1 38 343-382 22-59 (353)
224 2vx3_A Dual specificity tyrosi 95.7 0.006 2.1E-07 54.9 3.4 39 341-381 51-89 (382)
225 1t46_A HOMO sapiens V-KIT hard 95.7 0.0075 2.6E-07 52.4 4.0 40 344-383 23-65 (313)
226 3op5_A Serine/threonine-protei 95.7 0.004 1.4E-07 55.7 2.2 40 343-382 34-76 (364)
227 3uqc_A Probable conserved tran 95.7 0.0086 3E-07 51.5 4.3 39 344-384 31-69 (286)
228 1p4o_A Insulin-like growth fac 95.7 0.0024 8.3E-08 55.9 0.7 49 334-382 15-66 (322)
229 3e7e_A HBUB1, BUB1A, mitotic c 95.6 0.0042 1.4E-07 55.5 2.2 42 341-382 62-106 (365)
230 3a99_A Proto-oncogene serine/t 95.6 0.0076 2.6E-07 52.7 3.8 39 343-383 42-80 (320)
231 3brb_A Proto-oncogene tyrosine 95.6 0.0041 1.4E-07 54.2 2.0 43 341-383 31-74 (313)
232 3fxz_A Serine/threonine-protei 95.6 0.011 3.8E-07 51.0 4.8 38 344-383 20-57 (297)
233 2h8h_A Proto-oncogene tyrosine 95.6 0.0067 2.3E-07 57.3 3.5 38 343-383 266-303 (535)
234 2ks1_B Epidermal growth factor 95.6 0.024 8.3E-07 32.6 4.4 31 286-316 9-39 (44)
235 4e5w_A Tyrosine-protein kinase 95.6 0.0073 2.5E-07 52.2 3.4 38 346-383 23-62 (302)
236 2psq_A Fibroblast growth facto 95.6 0.0074 2.5E-07 54.1 3.5 39 344-382 81-124 (370)
237 3cek_A Dual specificity protei 95.5 0.0028 9.6E-08 55.3 0.6 44 337-383 21-64 (313)
238 1k9a_A Carboxyl-terminal SRC k 95.5 0.0062 2.1E-07 56.2 2.9 36 344-383 193-228 (450)
239 3kvw_A DYRK2, dual specificity 95.5 0.0086 2.9E-07 54.8 3.9 36 345-382 98-133 (429)
240 2iwi_A Serine/threonine-protei 95.4 0.0092 3.2E-07 51.9 3.7 40 342-383 29-68 (312)
241 3c1x_A Hepatocyte growth facto 95.4 0.011 3.7E-07 53.0 4.2 33 349-382 94-128 (373)
242 3q60_A ROP5B; pseudokinase, tr 95.4 0.0084 2.9E-07 53.7 3.4 38 344-383 62-99 (371)
243 1u5q_A Serine/threonine protei 95.4 0.011 3.8E-07 52.4 4.1 37 345-383 55-91 (348)
244 3mdy_A Bone morphogenetic prot 95.4 0.0058 2E-07 53.8 2.2 36 343-382 36-71 (337)
245 2i0e_A Protein kinase C-beta I 95.4 0.0055 1.9E-07 54.5 2.0 38 343-382 19-56 (353)
246 3dls_A PAS domain-containing s 95.3 0.0083 2.8E-07 52.9 3.0 38 344-383 24-61 (335)
247 1vzo_A Ribosomal protein S6 ki 95.3 0.0082 2.8E-07 53.4 2.9 38 344-381 54-92 (355)
248 3pls_A Macrophage-stimulating 95.3 0.01 3.6E-07 51.1 3.5 35 348-382 25-60 (298)
249 2w1i_A JAK2; chromosomal rearr 95.3 0.011 3.9E-07 51.7 3.8 36 346-382 43-81 (326)
250 3nsz_A CK II alpha, casein kin 95.3 0.011 3.8E-07 51.8 3.6 37 344-382 36-72 (330)
251 3lxl_A Tyrosine-protein kinase 95.3 0.0091 3.1E-07 52.4 3.1 38 345-382 24-63 (327)
252 3is5_A Calcium-dependent prote 95.3 0.01 3.4E-07 50.9 3.3 38 345-384 23-60 (285)
253 3i6u_A CDS1, serine/threonine- 95.3 0.012 4E-07 53.7 3.9 38 343-382 134-171 (419)
254 1wak_A Serine/threonine-protei 95.3 0.012 4E-07 53.1 3.8 36 344-381 37-72 (397)
255 2y7j_A Phosphorylase B kinase 95.2 0.014 4.8E-07 52.1 4.2 38 343-383 93-131 (365)
256 1opk_A P150, C-ABL, proto-onco 95.2 0.007 2.4E-07 56.6 2.3 39 343-383 219-257 (495)
257 3og7_A AKAP9-BRAF fusion prote 95.2 0.011 3.8E-07 50.7 3.4 35 344-383 24-58 (289)
258 2pvf_A Fibroblast growth facto 95.2 0.011 3.6E-07 52.1 3.3 40 344-383 35-79 (334)
259 3a7i_A MST3 kinase, serine/thr 95.2 0.017 5.8E-07 49.9 4.6 38 344-383 22-59 (303)
260 1zth_A RIO1 serine protein kin 95.2 0.016 5.5E-07 48.9 4.2 31 349-382 52-85 (258)
261 3gbz_A Kinase, CMGC CDK; ssgci 95.2 0.012 4E-07 51.8 3.5 39 343-383 33-71 (329)
262 3qup_A Tyrosine-protein kinase 95.2 0.0047 1.6E-07 54.1 0.8 45 338-382 17-62 (323)
263 3uc3_A Serine/threonine-protei 95.1 0.015 5.3E-07 51.8 4.2 38 344-383 20-57 (361)
264 3uto_A Twitchin; kinase, muscl 95.1 0.012 4.2E-07 55.9 3.7 37 344-382 157-193 (573)
265 3lxp_A Non-receptor tyrosine-p 95.1 0.014 4.7E-07 51.0 3.8 37 347-383 34-72 (318)
266 3fhr_A MAP kinase-activated pr 95.1 0.013 4.6E-07 51.6 3.7 36 345-382 29-65 (336)
267 1t4h_A Serine/threonine-protei 95.1 0.019 6.5E-07 49.2 4.6 32 349-382 31-62 (290)
268 4exu_A Mitogen-activated prote 95.1 0.016 5.3E-07 51.9 4.2 37 344-382 42-78 (371)
269 3a62_A Ribosomal protein S6 ki 95.1 0.011 3.6E-07 52.0 2.9 39 344-382 17-56 (327)
270 3tt0_A Basic fibroblast growth 95.1 0.014 4.8E-07 52.4 3.8 40 344-383 69-113 (382)
271 4gyi_A RIO2 kinase; protein ki 95.1 0.016 5.6E-07 51.8 4.1 33 347-382 98-130 (397)
272 3coi_A Mitogen-activated prote 95.1 0.016 5.6E-07 51.3 4.1 37 344-382 24-60 (353)
273 3n9x_A Phosphotransferase; mal 95.1 0.014 4.8E-07 53.5 3.8 37 344-382 26-62 (432)
274 3pfq_A PKC-B, PKC-beta, protei 95.1 0.01 3.6E-07 57.7 3.0 38 343-382 340-377 (674)
275 2qr7_A Ribosomal protein S6 ki 95.0 0.013 4.4E-07 51.8 3.4 38 344-383 22-59 (342)
276 3hko_A Calcium/calmodulin-depe 95.0 0.013 4.3E-07 51.8 3.2 41 340-382 22-62 (345)
277 3lm5_A Serine/threonine-protei 95.0 0.015 5.2E-07 51.0 3.6 32 350-383 35-66 (327)
278 1rdq_E PKA C-alpha, CAMP-depen 95.0 0.013 4.4E-07 52.0 3.2 37 344-382 41-77 (350)
279 3rp9_A Mitogen-activated prote 95.0 0.013 4.6E-07 54.0 3.4 37 344-382 53-89 (458)
280 4aaa_A Cyclin-dependent kinase 95.0 0.013 4.3E-07 51.5 3.1 37 345-383 26-62 (331)
281 3lb7_A RAF proto-oncogene seri 95.0 0.017 5.8E-07 50.1 3.9 34 344-382 36-69 (307)
282 3c4z_A Rhodopsin kinase; Ser/T 94.9 0.013 4.4E-07 55.3 3.2 37 344-382 185-221 (543)
283 1byg_A CSK, protein (C-termina 94.9 0.012 4.2E-07 50.1 2.8 36 344-383 21-56 (278)
284 2yfx_A Tyrosine-protein kinase 94.9 0.012 3.9E-07 51.7 2.7 39 344-382 30-71 (327)
285 2wqm_A Serine/threonine-protei 94.9 0.018 6.1E-07 50.0 3.8 37 344-382 32-68 (310)
286 2y4i_B KSR2, HKSR2, kinase sup 94.9 0.023 7.9E-07 49.4 4.5 37 341-382 30-66 (319)
287 3qyz_A Mitogen-activated prote 94.9 0.017 5.7E-07 51.6 3.6 38 343-382 26-63 (364)
288 1fvr_A Tyrosine-protein kinase 94.9 0.015 5.1E-07 50.9 3.3 39 344-382 25-63 (327)
289 3ll6_A Cyclin G-associated kin 94.8 0.016 5.4E-07 50.9 3.4 37 344-382 28-64 (337)
290 2dyl_A Dual specificity mitoge 94.8 0.014 4.8E-07 50.8 3.0 38 344-383 25-62 (318)
291 4ejn_A RAC-alpha serine/threon 94.8 0.014 4.8E-07 53.7 3.0 37 344-382 148-184 (446)
292 1b6c_B TGF-B superfamily recep 94.8 0.011 3.6E-07 52.2 2.1 36 343-382 41-76 (342)
293 3eqc_A Dual specificity mitoge 94.8 0.019 6.4E-07 51.1 3.7 37 344-382 33-69 (360)
294 4e7w_A Glycogen synthase kinas 94.8 0.014 4.6E-07 52.8 2.8 35 346-383 42-76 (394)
295 2acx_A G protein-coupled recep 94.7 0.014 4.7E-07 55.4 2.7 38 343-382 183-220 (576)
296 2j7t_A Serine/threonine-protei 94.7 0.021 7.2E-07 49.2 3.8 38 344-383 19-56 (302)
297 2xrw_A Mitogen-activated prote 94.7 0.025 8.4E-07 50.6 4.3 37 344-382 25-61 (371)
298 2eu9_A Dual specificity protei 94.7 0.017 5.9E-07 51.0 3.2 37 344-381 19-55 (355)
299 2pml_X PFPK7, Ser/Thr protein 94.7 0.019 6.5E-07 50.7 3.4 35 344-382 31-65 (348)
300 2x4f_A Myosin light chain kina 94.6 0.017 5.7E-07 51.8 3.0 32 349-382 94-125 (373)
301 1cm8_A Phosphorylated MAP kina 94.6 0.017 5.9E-07 51.6 3.1 37 344-382 25-61 (367)
302 3f66_A Hepatocyte growth facto 94.6 0.017 5.9E-07 49.7 2.9 37 346-382 27-64 (298)
303 2fst_X Mitogen-activated prote 94.5 0.019 6.4E-07 51.4 3.1 37 344-382 29-65 (367)
304 1u46_A ACK-1, activated CDC42 94.5 0.0089 3E-07 51.3 1.0 38 344-382 18-57 (291)
305 1q8y_A SR protein kinase; tran 94.5 0.024 8.1E-07 50.6 3.8 37 344-382 19-55 (373)
306 3ttj_A Mitogen-activated prote 94.5 0.024 8.1E-07 52.5 3.9 37 344-382 62-98 (464)
307 3q5i_A Protein kinase; CDPK, m 94.5 0.024 8.2E-07 53.1 3.8 38 344-383 36-73 (504)
308 2h34_A Serine/threonine-protei 94.5 0.023 7.9E-07 49.3 3.5 37 344-382 34-70 (309)
309 3com_A Serine/threonine-protei 94.4 0.023 7.7E-07 49.4 3.4 38 344-383 29-66 (314)
310 2bdw_A Hypothetical protein K1 94.4 0.02 6.9E-07 51.0 3.0 38 344-383 29-66 (362)
311 2jii_A Serine/threonine-protei 94.4 0.016 5.6E-07 51.3 2.4 39 344-382 42-86 (352)
312 1nxk_A MAP kinase-activated pr 94.3 0.036 1.2E-06 50.1 4.4 30 350-381 68-97 (400)
313 2l2t_A Receptor tyrosine-prote 94.3 0.062 2.1E-06 30.8 3.7 30 287-316 9-38 (44)
314 2wei_A Calmodulin-domain prote 94.2 0.022 7.6E-07 48.7 2.8 37 345-383 23-59 (287)
315 1kob_A Twitchin; kinase, intra 94.2 0.03 1E-06 50.4 3.7 37 344-382 51-87 (387)
316 3c0i_A Peripheral plasma membr 94.2 0.03 1E-06 49.7 3.6 34 346-381 26-59 (351)
317 2buj_A Serine/threonine-protei 94.1 0.026 8.9E-07 49.1 3.1 36 344-381 29-64 (317)
318 2owb_A Serine/threonine-protei 94.1 0.023 7.9E-07 50.0 2.7 37 344-382 41-77 (335)
319 3p23_A Serine/threonine-protei 94.0 0.024 8.1E-07 51.9 2.7 37 342-382 22-59 (432)
320 3m2w_A MAP kinase-activated pr 94.0 0.043 1.5E-06 47.2 4.3 31 350-382 24-54 (299)
321 2ivs_A Proto-oncogene tyrosine 94.0 0.028 9.5E-07 48.8 3.0 40 343-382 22-64 (314)
322 2pzi_A Probable serine/threoni 93.9 0.025 8.4E-07 55.2 2.6 38 344-382 80-117 (681)
323 3nyv_A Calmodulin-domain prote 93.8 0.034 1.2E-06 51.7 3.3 36 346-383 28-63 (484)
324 2i1m_A Macrophage colony-stimu 93.7 0.046 1.6E-06 47.9 3.9 44 339-382 41-87 (333)
325 3gni_B Strad alpha; kinase fol 93.7 0.036 1.2E-06 49.8 3.2 38 344-383 25-64 (389)
326 2j0j_A Focal adhesion kinase 1 93.5 0.042 1.5E-06 53.2 3.6 38 345-382 391-429 (656)
327 3lij_A Calcium/calmodulin depe 93.5 0.046 1.6E-06 51.0 3.7 36 346-383 39-74 (494)
328 2v62_A Serine/threonine-protei 93.3 0.027 9.1E-07 49.8 1.6 39 344-382 37-76 (345)
329 3mwu_A Calmodulin-domain prote 93.1 0.06 2E-06 50.1 3.7 34 346-381 24-57 (486)
330 3en9_A Glycoprotease, O-sialog 92.6 0.14 4.9E-06 48.2 5.6 31 347-381 339-369 (540)
331 2jwa_A Receptor tyrosine-prote 91.1 0.28 9.5E-06 28.0 3.5 7 290-296 14-20 (44)
332 2lz0_A Uncharacterized protein 86.9 1.8 6.1E-05 30.1 6.0 45 23-68 8-52 (100)
333 2lz0_A Uncharacterized protein 82.3 4.4 0.00015 28.1 6.4 49 44-93 5-53 (100)
334 2k1k_A Ephrin type-A receptor 78.8 1.8 6.3E-05 23.9 2.7 7 308-314 31-37 (38)
335 1xjd_A Protein kinase C, theta 78.8 1.3 4.5E-05 38.9 3.3 27 341-367 14-40 (345)
336 2k9y_A Ephrin type-A receptor 77.6 1.3 4.5E-05 24.9 2.0 10 289-298 14-23 (41)
337 3mi9_A Cell division protein k 73.2 2 6.9E-05 37.5 3.0 24 344-367 17-40 (351)
338 1phk_A Phosphorylase kinase; g 70.5 2.9 9.8E-05 35.4 3.3 24 344-367 17-40 (298)
339 2l2t_A Receptor tyrosine-prote 69.0 3.5 0.00012 23.5 2.2 30 288-318 14-43 (44)
340 1iij_A ERBB-2 receptor protein 60.8 2 6.7E-05 23.1 0.2 7 290-296 10-16 (35)
341 2y94_A 5'-AMP-activated protei 59.8 5.8 0.0002 36.5 3.3 22 345-366 17-38 (476)
342 2l6w_A Beta-type platelet-deri 60.7 2.4 8.3E-05 23.2 0.0 27 291-317 11-37 (39)
343 2l9u_A Receptor tyrosine-prote 49.8 13 0.00043 19.6 2.1 10 307-316 25-34 (40)
344 3cxl_A N-chimerin; SH2, RHO-GA 31.8 4.8 0.00016 36.9 -2.1 24 357-382 152-181 (463)
345 2l8s_A Integrin alpha-1; trans 28.4 84 0.0029 18.7 3.6 11 288-298 10-20 (54)
346 2olc_A MTR kinase, methylthior 26.4 47 0.0016 29.3 3.5 29 350-380 36-64 (397)
347 1nd4_A Aminoglycoside 3'-phosp 21.5 41 0.0014 27.2 2.0 27 353-382 29-55 (264)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-37 Score=306.16 Aligned_cols=273 Identities=36% Similarity=0.556 Sum_probs=245.7
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
+|..+.++++ |++|++++|.+++..|..|.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..
T Consensus 410 ~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 410 IPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp CCGGGGGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cCHHHhcCCC-CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 6778888886 999999999998888888989999999999999998888888888999999999999998888888999
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcc----------
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSN---------- 151 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~---------- 151 (388)
+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..++.+ +.|++++|.+++.+|..
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~ 567 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAA 567 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCC
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhh
Confidence 9999999999999998889999999999999999999988899999999998 89999999887665543
Q ss_pred ------------------------------------------------------------cccCCCCCEEEcccCccccc
Q 042573 152 ------------------------------------------------------------FGILKNLGVISLSENKLSGE 171 (388)
Q Consensus 152 ------------------------------------------------------------~~~l~~L~~L~L~~n~l~~~ 171 (388)
+..+++|+.|++++|.+++.
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ 647 (768)
T 3rgz_A 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647 (768)
T ss_dssp STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC
T ss_pred hccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc
Confidence 33356789999999999999
Q ss_pred CChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCC
Q 042573 172 IPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFS 251 (388)
Q Consensus 172 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~ 251 (388)
+|..+..+++|+.|++++|.+++.+|..+..+++|+.|||++|++++.+|..+..+++|+.|++++|+++|.+|..+++.
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 727 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCcCCCCCCCCCCCCccc
Q 042573 252 NSSAISLDGNDNLCGGISDLHLSTCSIKE 280 (388)
Q Consensus 252 ~~~~~~~~~~~~~c~~~~~~~~~~c~~~~ 280 (388)
.+....+.+|+.+||.+. ..|....
T Consensus 728 ~~~~~~~~gN~~Lcg~~l----~~C~~~~ 752 (768)
T 3rgz_A 728 TFPPAKFLNNPGLCGYPL----PRCDPSN 752 (768)
T ss_dssp GSCGGGGCSCTEEESTTS----CCCCSCC
T ss_pred cCCHHHhcCCchhcCCCC----cCCCCCc
Confidence 999999999999999753 3676543
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.1e-37 Score=271.73 Aligned_cols=255 Identities=30% Similarity=0.529 Sum_probs=240.5
Q ss_pred cccEEEeecCceee--cCcccccCCCCCCEEECcC-CccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEE
Q 042573 12 RLGKLSVAENQLFG--NIPSGLTNLVNLELLDLGD-NQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAIL 88 (388)
Q Consensus 12 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 88 (388)
++++|+|++|.+++ .+|..|.++++|++|++++ |.+.+.+|..|.++++|++|+|++|.+.+..|..|.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 59999999999998 8899999999999999995 99998999999999999999999999999999999999999999
Q ss_pred eccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccC-cccceEEccCccCcCCCCcccccCCCCCEEEcccCc
Q 042573 89 DFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLP-SFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENK 167 (388)
Q Consensus 89 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 167 (388)
++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ .+ +.|++++|.+++..|..+..+. |+.|++++|.
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF-TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC-CEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC-cEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 9999999999999999999999999999999989999999998 66 9999999999999999999987 9999999999
Q ss_pred ccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC
Q 042573 168 LSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK 247 (388)
Q Consensus 168 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~ 247 (388)
+++..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999866655 778899999999999999999999999999999999999999999988
Q ss_pred CcCCCCccccccCCCCCcCCCC
Q 042573 248 GVFSNSSAISLDGNDNLCGGIS 269 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~c~~~~ 269 (388)
..++.+..+++.+|+..|+.+.
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTS
T ss_pred ccccccChHHhcCCCCccCCCC
Confidence 8889999999999999998643
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-33 Score=281.12 Aligned_cols=256 Identities=34% Similarity=0.512 Sum_probs=189.5
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
|++|++++|.+++.+|..|.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 66666666666666666777777777777777777767777777777777777777777777777777777777777777
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccC
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEI 172 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 172 (388)
|.+++.+|..+.++++|+.|++++|++.+.+|..+..++.+ +.|++++|.+++..|..+..+++|+.|++++|.+++.+
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL-AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC-CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 77777777777777777777777777777777777777777 77777777777777777777777888888777776655
Q ss_pred Chhh----------------------------------------------------------------------cccccc
Q 042573 173 PSSL----------------------------------------------------------------------GSCIRL 182 (388)
Q Consensus 173 ~~~~----------------------------------------------------------------------~~l~~L 182 (388)
|..+ ..+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 5432 223567
Q ss_pred ceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC-CcCCCCccccccCC
Q 042573 183 EQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK-GVFSNSSAISLDGN 261 (388)
Q Consensus 183 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~~ 261 (388)
+.|++++|.+++.+|..+..++.|+.|+|++|++++.+|..+..+++|+.||+++|++++.+|.. ..+..+..++++.|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 77888888888778888888888888888888888888888888888888888888888877743 44566777777766
Q ss_pred CCCcCCCCC
Q 042573 262 DNLCGGISD 270 (388)
Q Consensus 262 ~~~c~~~~~ 270 (388)
. ..|.+|.
T Consensus 715 ~-l~g~iP~ 722 (768)
T 3rgz_A 715 N-LSGPIPE 722 (768)
T ss_dssp E-EEEECCS
T ss_pred c-ccccCCC
Confidence 5 4455443
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-34 Score=256.42 Aligned_cols=239 Identities=29% Similarity=0.471 Sum_probs=223.2
Q ss_pred CChhhhhccccccEEEeec-CceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCcc
Q 042573 2 LPEAVGNLSTRLGKLSVAE-NQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIG 80 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 80 (388)
+|..+.+++. |++|++++ |.+++.+|..|.++++|++|++++|.+.+.+|..|.++++|++|++++|.+.+..|..|.
T Consensus 68 ~~~~l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 68 IPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp CCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred cChhHhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 6889999987 99999995 999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCCCCCEEeccCCcccccCCcCCCCCC-CCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCC
Q 042573 81 NLTSLAILDFAENMLEGSIPSSLGKCQ-NLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLG 159 (388)
Q Consensus 81 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~ 159 (388)
.+++|++|++++|.+++.+|..+..++ +|+.|++++|.+.+..|..+..+. + +.|++++|.+++..+..+..+++|+
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-~~L~Ls~N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-AFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C-SEEECCSSEEEECCGGGCCTTSCCS
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c-cEEECcCCcccCcCCHHHhcCCCCC
Confidence 999999999999999988999999998 999999999999988999998887 6 9999999999998999999999999
Q ss_pred EEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEccccc
Q 042573 160 VISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNH 239 (388)
Q Consensus 160 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~ 239 (388)
.|++++|.+++..+. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+
T Consensus 225 ~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred EEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 999999999866665 788999999999999999999999999999999999999999888876 788999999999999
Q ss_pred CcccCC
Q 042573 240 FEGEVP 245 (388)
Q Consensus 240 ~~~~~~ 245 (388)
.-|..|
T Consensus 303 ~lc~~p 308 (313)
T 1ogq_A 303 CLCGSP 308 (313)
T ss_dssp EEESTT
T ss_pred CccCCC
Confidence 665544
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-32 Score=256.77 Aligned_cols=87 Identities=30% Similarity=0.344 Sum_probs=42.1
Q ss_pred CCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcc
Q 042573 157 NLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLS 236 (388)
Q Consensus 157 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~ 236 (388)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 34444444444444444444445555555555555544444444444555555555555544444444444455555555
Q ss_pred cccCccc
Q 042573 237 FNHFEGE 243 (388)
Q Consensus 237 ~n~~~~~ 243 (388)
+|.+++.
T Consensus 356 ~N~l~~~ 362 (455)
T 3v47_A 356 YNHIRAL 362 (455)
T ss_dssp SSCCCEE
T ss_pred CCccccc
Confidence 5544443
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=260.16 Aligned_cols=260 Identities=22% Similarity=0.223 Sum_probs=141.8
Q ss_pred hhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCC
Q 042573 4 EAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLT 83 (388)
Q Consensus 4 ~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 83 (388)
+.|.++++ |++|+|++|.+++..|..|.++++|++|+|++|.+....+..|.++++|++|+|++|.+.+..+..|..++
T Consensus 50 ~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 50 DEFASFPH-LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hHccCCCC-CCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 44555554 66666666666665566666666666666666666644444556666666666666666655566666666
Q ss_pred CCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEc
Q 042573 84 SLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISL 163 (388)
Q Consensus 84 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 163 (388)
+|++|++++|.+....+..|..+++|+.|++++|+++...+..+..++.+ +.|++++|.+.+..+..|..+++|+.|++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL-IVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC-CEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC-cEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 66666666666665555666666666666666666654433344455554 45555555444333333333333332222
Q ss_pred ------------------------ccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccc
Q 042573 164 ------------------------SENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGR 219 (388)
Q Consensus 164 ------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 219 (388)
++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred CCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence 22333322223344555566666666666555555555555555555555555555
Q ss_pred cchhhhcCCCCcEEEcccccCcccCCC-CCcCCCCccccccCCCCCc
Q 042573 220 IPKYFENFLFLQKLNLSFNHFEGEVPI-KGVFSNSSAISLDGNDNLC 265 (388)
Q Consensus 220 ~~~~l~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~~~~~~~~~c 265 (388)
.+..+..+++|+.|++++|.++...+. ...++++..+++.+|+..|
T Consensus 288 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 555555555555555555555543221 1223444555555555544
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=1.3e-31 Score=250.56 Aligned_cols=240 Identities=24% Similarity=0.283 Sum_probs=217.1
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||..+ +.++++|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.++...+..|..
T Consensus 69 iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 69 VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp CCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred cCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 45544 346999999999999999999999999999999999999888899999999999999999999777788999
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCC-cCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCE
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKN-NLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGV 160 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~ 160 (388)
+++|++|+|++|.+....+..|.++++|+.|++++| .+....+..+..++.+ ++|++++|.+++. | .+..+++|+.
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~~-~-~~~~l~~L~~ 222 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMCNIKDM-P-NLTPLVGLEE 222 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTSCCSSC-C-CCTTCTTCCE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCCccccc-c-cccccccccE
Confidence 999999999999999877788999999999999984 4443344468889998 9999999999864 3 5788999999
Q ss_pred EEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccC
Q 042573 161 ISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHF 240 (388)
Q Consensus 161 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~ 240 (388)
|+|++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 99999999988899999999999999999999988999999999999999999999988888899999999999999999
Q ss_pred cccCCCC
Q 042573 241 EGEVPIK 247 (388)
Q Consensus 241 ~~~~~~~ 247 (388)
.|.|...
T Consensus 303 ~CdC~~~ 309 (452)
T 3zyi_A 303 NCDCDIL 309 (452)
T ss_dssp ECSTTTH
T ss_pred CCCCCch
Confidence 9998753
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=9.3e-32 Score=252.14 Aligned_cols=263 Identities=22% Similarity=0.249 Sum_probs=208.8
Q ss_pred ChhhhhccccccEEEeecCceee-cCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcC--c
Q 042573 3 PEAVGNLSTRLGKLSVAENQLFG-NIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSS--I 79 (388)
Q Consensus 3 p~~~~~l~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--~ 79 (388)
|..+.++++ |++|++++|.+.+ ..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..+.. |
T Consensus 47 ~~~~~~l~~-L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 125 (455)
T 3v47_A 47 ETSFSRLQD-LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125 (455)
T ss_dssp TTTTSSCTT-CCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred hhHhccCcc-ccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence 566777776 8888888887763 34566788888888888888887777777888888888888888776544433 7
Q ss_pred cCCCCCCEEeccCCcccccCCcC-CCCCCCCCEEeCCCCcCCCcCChhhhcc----------------------------
Q 042573 80 GNLTSLAILDFAENMLEGSIPSS-LGKCQNLILLDLSKNNLSGTIPTEVIGL---------------------------- 130 (388)
Q Consensus 80 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~---------------------------- 130 (388)
..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence 77888888888888877665655 6777778888877777765544333221
Q ss_pred ---------------------------------------------------------------------CcccceEEccC
Q 042573 131 ---------------------------------------------------------------------PSFSIYLNLSQ 141 (388)
Q Consensus 131 ---------------------------------------------------------------------~~l~~~L~l~~ 141 (388)
+.+ +.|++++
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~l~~ 284 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV-KTCDLSK 284 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC-CEEECCS
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc-eEEEecC
Confidence 234 6667777
Q ss_pred ccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccc
Q 042573 142 NQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIP 221 (388)
Q Consensus 142 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 221 (388)
|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 77777778889999999999999999998888889999999999999999998888899999999999999999998889
Q ss_pred hhhhcCCCCcEEEcccccCcccCCCC-CcCCCCccccccCCCCCcCC
Q 042573 222 KYFENFLFLQKLNLSFNHFEGEVPIK-GVFSNSSAISLDGNDNLCGG 267 (388)
Q Consensus 222 ~~l~~l~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 267 (388)
..+..+++|+.|++++|++++..+.. ..++.+..+++.+|+..|..
T Consensus 365 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred hhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 99999999999999999999754432 56778899999999988854
No 9
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.98 E-value=2.1e-31 Score=248.29 Aligned_cols=240 Identities=25% Similarity=0.302 Sum_probs=217.2
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||..++ .++++|+|++|.++...+..|.++++|++|+|++|.+....+..|.++++|++|+|++|.++...+..|..
T Consensus 58 iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 58 VPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp CCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred CCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 565554 45999999999999998899999999999999999999888889999999999999999999777778999
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCc-CCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCE
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNN-LSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGV 160 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~ 160 (388)
+++|++|++++|.+....+..|..+++|+.|++++|+ +....+..+..++.+ ++|++++|.++.. | .+..+++|+.
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~~-~-~~~~l~~L~~ 211 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLREI-P-NLTPLIKLDE 211 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCSSC-C-CCTTCSSCCE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCccc-c-ccCCCcccCE
Confidence 9999999999999998778899999999999999854 443444468889999 9999999999844 4 4788999999
Q ss_pred EEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccC
Q 042573 161 ISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHF 240 (388)
Q Consensus 161 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~ 240 (388)
|+|++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|+|++|+++...+..+..+++|+.|++++|++
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99999999988899999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred cccCCCC
Q 042573 241 EGEVPIK 247 (388)
Q Consensus 241 ~~~~~~~ 247 (388)
.|+|...
T Consensus 292 ~CdC~l~ 298 (440)
T 3zyj_A 292 NCNCDIL 298 (440)
T ss_dssp ECSSTTH
T ss_pred cCCCCch
Confidence 9998743
No 10
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.98 E-value=1.5e-32 Score=243.80 Aligned_cols=264 Identities=24% Similarity=0.265 Sum_probs=221.1
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccC--CCccccCCCCCCEEEcccCcccccCCcCc
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGR--IPGSIGDLQKLQRLWLKGNKFWGEIPSSI 79 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 79 (388)
||..+ +++|++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|++++|.+. .+|..+
T Consensus 22 ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~ 97 (306)
T 2z66_A 22 VPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 97 (306)
T ss_dssp CCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEE
T ss_pred CCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhc
Confidence 45544 34599999999999976666789999999999999998732 2556778999999999999987 466678
Q ss_pred cCCCCCCEEeccCCcccccCC-cCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcC-CCCcccccCCC
Q 042573 80 GNLTSLAILDFAENMLEGSIP-SSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNG-PLPSNFGILKN 157 (388)
Q Consensus 80 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~-~~~~~~~~l~~ 157 (388)
..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..++.+ +.|++++|.+++ ..|..+..+++
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTT
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccccccchhHHhhCcC
Confidence 899999999999999986554 578999999999999999987788888889999 999999999986 57888999999
Q ss_pred CCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCC-CCcEEEcc
Q 042573 158 LGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFL-FLQKLNLS 236 (388)
Q Consensus 158 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~l~l~ 236 (388)
|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..++ +|+.|+++
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 99999999999988888899999999999999999977777888999999999999999998888888885 89999999
Q ss_pred cccCcccCCCC---CcCCCCccccccCCCCCcCCCCC
Q 042573 237 FNHFEGEVPIK---GVFSNSSAISLDGNDNLCGGISD 270 (388)
Q Consensus 237 ~n~~~~~~~~~---~~~~~~~~~~~~~~~~~c~~~~~ 270 (388)
+|+++|.++.. .++.....+.+..+...|..+..
T Consensus 257 ~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 257 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp TCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred CCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 99999987642 22333344444455556665443
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=1.8e-31 Score=251.60 Aligned_cols=257 Identities=21% Similarity=0.220 Sum_probs=223.2
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||..+ +.++++|+|++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..|.+
T Consensus 26 ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 26 VPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp CCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred CCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 56544 456999999999999988999999999999999999999888999999999999999999999777778999
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEE
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVI 161 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L 161 (388)
+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..++.+ +.|++++|.+++..+..+..+++|+.|
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL-EQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC-CEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC-CEEECCCCcCcccChhHhcccCCCcEE
Confidence 9999999999999998889999999999999999999998888889999999 999999999997777789999999999
Q ss_pred EcccCcccccCChhhccccccceecccC------------------------ccccccCCccCcCCCCCCEEECCCCcCc
Q 042573 162 SLSENKLSGEIPSSLGSCIRLEQLVMNG------------------------NFFRGNIPSSFSSLRGIEKLDLSRNNLS 217 (388)
Q Consensus 162 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 217 (388)
++++|.+.+..+..|..+++|+.|++++ |.++...+..+..+++|+.|++++|.++
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 9999999877766666666655555554 5554333345778899999999999999
Q ss_pred cccchhhhcCCCCcEEEcccccCcccCCCC-CcCCCCccccccCCC
Q 042573 218 GRIPKYFENFLFLQKLNLSFNHFEGEVPIK-GVFSNSSAISLDGND 262 (388)
Q Consensus 218 ~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~-~~~~~~~~~~~~~~~ 262 (388)
+..+..+..+++|+.|++++|.+++..+.. ..++++..+++.+|.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 888888999999999999999999865532 456778888888775
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.98 E-value=2e-31 Score=234.05 Aligned_cols=253 Identities=22% Similarity=0.247 Sum_probs=219.8
Q ss_pred cEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCC
Q 042573 14 GKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAEN 93 (388)
Q Consensus 14 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 93 (388)
++++.+++.++. +|..+ .++|++|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 678898888884 45433 479999999999999777788999999999999999999888899999999999999999
Q ss_pred c-ccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccC
Q 042573 94 M-LEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEI 172 (388)
Q Consensus 94 ~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 172 (388)
. +....+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|+.|++++|.+++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 7 776668899999999999999999997778888899999 99999999999777778999999999999999999777
Q ss_pred ChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCCC
Q 042573 173 PSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSN 252 (388)
Q Consensus 173 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~ 252 (388)
+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.|.++..+....
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence 77799999999999999999988899999999999999999999988888899999999999999999998875433333
Q ss_pred CccccccCCCCCcCCCCC
Q 042573 253 SSAISLDGNDNLCGGISD 270 (388)
Q Consensus 253 ~~~~~~~~~~~~c~~~~~ 270 (388)
+.......+...|..|+.
T Consensus 250 l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHHCCSEECCCBEEESGG
T ss_pred HHhcccccCccccCCchH
Confidence 344444555666765543
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=6.6e-31 Score=255.17 Aligned_cols=261 Identities=26% Similarity=0.270 Sum_probs=147.1
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCC-ccccCCCCCCEEEcccCcccccC--CcC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIP-GSIGDLQKLQRLWLKGNKFWGEI--PSS 78 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~--~~~ 78 (388)
+|+++..+++ |++|++++|.+++..|..+.++++|++|++++|.+.+.++ ..+.++++|++|++++|.+.+.. +..
T Consensus 293 lp~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 293 LPSGLVGLST-LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCSSCCSCTT-CCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CChhhccccc-CCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 3444444443 4444444444444444444444455555555544442222 23445555555555555554433 445
Q ss_pred ccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChh-hhccCcccceEEccCccCcCCCCcccccCCC
Q 042573 79 IGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTE-VIGLPSFSIYLNLSQNQLNGPLPSNFGILKN 157 (388)
Q Consensus 79 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~ 157 (388)
+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. +..++.+ +.|++++|.+.+..+..+..+++
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL-KVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC-CEEECTTCCCBTTCTTTTTTCTT
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC-CEEECCCCccCCcCHHHHhCCCC
Confidence 555555555555555555555555556666666666666555443332 4555555 56666666666555556666666
Q ss_pred CCEEEcccCccccc---CChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEE
Q 042573 158 LGVISLSENKLSGE---IPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLN 234 (388)
Q Consensus 158 L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~ 234 (388)
|+.|++++|.+++. .+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..+++| .|+
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 66666666666541 22345566666666666666666666666666666666666666666666666666666 666
Q ss_pred cccccCcccCCCC-CcCCCCccccccCCCCCc
Q 042573 235 LSFNHFEGEVPIK-GVFSNSSAISLDGNDNLC 265 (388)
Q Consensus 235 l~~n~~~~~~~~~-~~~~~~~~~~~~~~~~~c 265 (388)
+++|++++..+.. ..++.+..+++.+|+..|
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 6666666544321 334556666777777666
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=5.2e-30 Score=235.29 Aligned_cols=256 Identities=21% Similarity=0.201 Sum_probs=185.2
Q ss_pred CChh-hhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCcc
Q 042573 2 LPEA-VGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIG 80 (388)
Q Consensus 2 ip~~-~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 80 (388)
||.. +..+++ |++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+....+..|.
T Consensus 60 l~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 138 (390)
T 3o6n_A 60 LPAALLDSFRQ-VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138 (390)
T ss_dssp ECTHHHHHCCC-CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CChhHhccccc-CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhc
Confidence 4555 456775 99999999999888888899999999999999999877788888999999999999998855555678
Q ss_pred CCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhcc------------------------------
Q 042573 81 NLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGL------------------------------ 130 (388)
Q Consensus 81 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~------------------------------ 130 (388)
.+++|++|++++|.+....+..+..+++|+.|++++|.+++.....+..+
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence 89999999999999987778888999999999999998874322222111
Q ss_pred -------CcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCC
Q 042573 131 -------PSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSL 203 (388)
Q Consensus 131 -------~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 203 (388)
+.+ +.|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++ ++..+..+
T Consensus 219 ~~~~~~~~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l 294 (390)
T 3o6n_A 219 VVRGPVNVEL-TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 294 (390)
T ss_dssp EEECCCCSSC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCC
T ss_pred eccccccccc-cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCC
Confidence 122 4444445544432 345666777777777777776666677777777777777777764 34445566
Q ss_pred CCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCCCCccccccCCCCCc
Q 042573 204 RGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGNDNLC 265 (388)
Q Consensus 204 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~c 265 (388)
++|++|++++|+++ .+|..+..+++|+.|++++|+++.. + ...++.+..+++.+|+..|
T Consensus 295 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEH
T ss_pred CCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccc
Confidence 77777777777776 3444566677777777777777643 2 3456667777777777666
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.3e-30 Score=247.71 Aligned_cols=257 Identities=21% Similarity=0.200 Sum_probs=213.9
Q ss_pred CChh-hhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCcc
Q 042573 2 LPEA-VGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIG 80 (388)
Q Consensus 2 ip~~-~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 80 (388)
||.. +..+++ |++|+|++|.+++..+..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+.+..+..|.
T Consensus 66 lp~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 144 (597)
T 3oja_B 66 LPAALLDSFRQ-VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144 (597)
T ss_dssp ECTHHHHHCCC-CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCHHHHccCCC-CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence 4554 456776 99999999999988888999999999999999999988888899999999999999999866666789
Q ss_pred CCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhcc------------------------------
Q 042573 81 NLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGL------------------------------ 130 (388)
Q Consensus 81 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~------------------------------ 130 (388)
.+++|++|++++|.+++..|..|..+++|+.|++++|.+.+.....+..+
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence 99999999999999998888889999999999999998875432222111
Q ss_pred -------CcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCC
Q 042573 131 -------PSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSL 203 (388)
Q Consensus 131 -------~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 203 (388)
+.+ +.|++++|.+++ +..+..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++ +|..+..+
T Consensus 225 ~~~~~~~~~L-~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 225 VVRGPVNVEL-TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp EEECSCCSCC-CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred ccccccCCCC-CEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence 123 556666666654 3567888999999999999998889999999999999999999985 46666778
Q ss_pred CCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCCCCccccccCCCCCcC
Q 042573 204 RGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGNDNLCG 266 (388)
Q Consensus 204 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 266 (388)
++|+.|+|++|.++ .+|..+..+++|+.|++++|++.+.. ...++.+..+++.+|++.|.
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 99999999999998 56667888999999999999998652 45677888999999988875
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.8e-30 Score=230.01 Aligned_cols=224 Identities=19% Similarity=0.248 Sum_probs=204.5
Q ss_pred cccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 12 RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 12 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
++++|+|++|.++ .+|..+.++++|++|++++|.+. .+|..+.++++|++|+|++|.+. .+|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 4999999999998 66777888999999999999998 88889999999999999999998 778899999999999999
Q ss_pred CCcccccCCcCCCC---------CCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEE
Q 042573 92 ENMLEGSIPSSLGK---------CQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVIS 162 (388)
Q Consensus 92 ~n~l~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 162 (388)
+|++.+.+|..+.. +++|++|++++|.++ .+|..+..++.+ +.|++++|.+++ .|..+..+++|+.|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 99888888887764 899999999999998 788889999999 899999999995 566789999999999
Q ss_pred cccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCc
Q 042573 163 LSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 163 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~ 241 (388)
+++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999899999999999999999999998899999999999999999999999999999999999999999877665
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.3e-29 Score=225.78 Aligned_cols=248 Identities=22% Similarity=0.284 Sum_probs=191.9
Q ss_pred ccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEec
Q 042573 11 TRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDF 90 (388)
Q Consensus 11 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 90 (388)
.+|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 35888888888888777777888888888888888888777888888888888888888877 4454443 68888888
Q ss_pred cCCcccccCCcCCCCCCCCCEEeCCCCcCCC--cCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcc
Q 042573 91 AENMLEGSIPSSLGKCQNLILLDLSKNNLSG--TIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKL 168 (388)
Q Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 168 (388)
++|.+....+..+.++++|+.|++++|.+.. ..+..+..++.+ +.|++++|.++. .|..+. ++|+.|++++|.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L-~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL-SYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC-CEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc-CEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 8888887666678888888888888888753 556677788888 888888888874 333332 6888888888888
Q ss_pred cccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC-
Q 042573 169 SGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK- 247 (388)
Q Consensus 169 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~- 247 (388)
++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 8777788888888999999988888777777888888999999998888 66777888888899999988887543321
Q ss_pred ------CcCCCCccccccCCCCCcC
Q 042573 248 ------GVFSNSSAISLDGNDNLCG 266 (388)
Q Consensus 248 ------~~~~~~~~~~~~~~~~~c~ 266 (388)
.....+..+++.+|+..+.
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CCcccccccccccceEeecCccccc
Confidence 1124455667777776553
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=3.3e-31 Score=239.97 Aligned_cols=259 Identities=19% Similarity=0.180 Sum_probs=195.5
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||.+++ ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..
T Consensus 46 iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 46 IPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp CCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred cccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 566554 35999999999999887778999999999999999999888888999999999999999998655556899
Q ss_pred CCCCCEEeccCCcccccCC-cCCCCCCCCCEEeCCCC-cCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCC
Q 042573 82 LTSLAILDFAENMLEGSIP-SSLGKCQNLILLDLSKN-NLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLG 159 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~ 159 (388)
+++|++|++++|.+....+ ..+..+++|++|++++| .+....+..+..++.+ +.|++++|.+++..+..+..+++|+
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL-EELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE-EEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC-CEEECCCCCcCccCHHHHhccccCC
Confidence 9999999999999995444 47899999999999998 4665667788899999 9999999999988888999999999
Q ss_pred EEEcccCcccccCChhhccccccceecccCccccccCCccCc---CCCCCCEEECCCCcCccc----cchhhhcCCCCcE
Q 042573 160 VISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFS---SLRGIEKLDLSRNNLSGR----IPKYFENFLFLQK 232 (388)
Q Consensus 160 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~ 232 (388)
+|++++|.+.......+..+++|+.|++++|.+++..+..+. ....++.++++++.+++. +|..+..+++|+.
T Consensus 202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~ 281 (353)
T 2z80_A 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281 (353)
T ss_dssp EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence 999999999744444455689999999999998865433222 234455555555554432 3444455555555
Q ss_pred EEcccccCcccCCCC--CcCCCCccccccCCCCCc
Q 042573 233 LNLSFNHFEGEVPIK--GVFSNSSAISLDGNDNLC 265 (388)
Q Consensus 233 l~l~~n~~~~~~~~~--~~~~~~~~~~~~~~~~~c 265 (388)
|++++|+++. +|.. ..++++..+++.+|+..|
T Consensus 282 L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 282 LEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccC
Confidence 5555555552 2221 234445555555555544
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.3e-29 Score=225.90 Aligned_cols=246 Identities=24% Similarity=0.276 Sum_probs=188.9
Q ss_pred cccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 12 RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 12 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
+|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+. .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 4888888888888777777888888888888888887777778888888888888888877 4444443 788888888
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCcCCC--cCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCccc
Q 042573 92 ENMLEGSIPSSLGKCQNLILLDLSKNNLSG--TIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLS 169 (388)
Q Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 169 (388)
+|.+....+..|..+++|+.|++++|.+.. ..+..+..+ .+ +.|++++|.+++ .|..+. ++|+.|++++|.++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L-~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL-NYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC-SCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc-CEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence 888886666667888888888888888752 455555555 66 788888888875 343332 68888999999988
Q ss_pred ccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC--
Q 042573 170 GEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK-- 247 (388)
Q Consensus 170 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~-- 247 (388)
+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 777778888899999999999998777778888899999999999988 66777888899999999999888643321
Q ss_pred -----CcCCCCccccccCCCCCcC
Q 042573 248 -----GVFSNSSAISLDGNDNLCG 266 (388)
Q Consensus 248 -----~~~~~~~~~~~~~~~~~c~ 266 (388)
.....+..+++.+|+..+.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGG
T ss_pred ccccccccccccceEeecCccccc
Confidence 1134466777888876643
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=4.9e-30 Score=225.22 Aligned_cols=235 Identities=20% Similarity=0.181 Sum_probs=206.9
Q ss_pred cccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCc-ccccCCcCccCCCCCCEE
Q 042573 10 STRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNK-FWGEIPSSIGNLTSLAIL 88 (388)
Q Consensus 10 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L 88 (388)
+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|. +....+..|..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4469999999999998888889999999999999999998888999999999999999997 776668899999999999
Q ss_pred eccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcc
Q 042573 89 DFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKL 168 (388)
Q Consensus 89 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 168 (388)
++++|.++...+..+.++++|++|++++|.+....+..+..++.+ +.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 999999998888899999999999999999997666678889999 9999999999977777899999999999999999
Q ss_pred cccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCC
Q 042573 169 SGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPI 246 (388)
Q Consensus 169 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~ 246 (388)
++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+.. .-...++.+..+.+.+.|..|.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 9888999999999999999999999777777899999999999999998544321 1112344555778888888774
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.7e-30 Score=252.51 Aligned_cols=255 Identities=22% Similarity=0.281 Sum_probs=217.8
Q ss_pred CChhhhhccccccEEEeecCceeec-----------------Cccccc--CCCCCCEEECcCCccccCCCccccCCCCCC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGN-----------------IPSGLT--NLVNLELLDLGDNQFTGRIPGSIGDLQKLQ 62 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 62 (388)
||++++++++ |++|+|++|.+++. +|..+. ++++|++|++++|.+.+.+|..|+++++|+
T Consensus 198 ip~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTK-LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccC-CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 7899999987 99999999999985 888888 999999999999999999999999999999
Q ss_pred EEEcccCc-ccc-cCCcCccCC------CCCCEEeccCCcccccCCc--CCCCCCCCCEEeCCCCcCCCcCChhhhccCc
Q 042573 63 RLWLKGNK-FWG-EIPSSIGNL------TSLAILDFAENMLEGSIPS--SLGKCQNLILLDLSKNNLSGTIPTEVIGLPS 132 (388)
Q Consensus 63 ~L~L~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 132 (388)
+|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. .+.++++|+.|++++|.+.+.+| .+..++.
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 99999998 887 788877776 99999999999999 7888 89999999999999999998888 8888888
Q ss_pred ccceEEccCccCcCCCCcccccCCC-CCEEEcccCcccccCChhhcccc--ccceecccCccccccCCccCc-------C
Q 042573 133 FSIYLNLSQNQLNGPLPSNFGILKN-LGVISLSENKLSGEIPSSLGSCI--RLEQLVMNGNFFRGNIPSSFS-------S 202 (388)
Q Consensus 133 l~~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~ 202 (388)
+ +.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+. +|+.|++++|.+.+..|..+. .
T Consensus 355 L-~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 355 L-ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp E-SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred C-CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 8 89999999998 77778899998 999999999998 6777666544 899999999999888888777 7
Q ss_pred CCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCc---------CCCCccccccCCCC
Q 042573 203 LRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGV---------FSNSSAISLDGNDN 263 (388)
Q Consensus 203 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~---------~~~~~~~~~~~~~~ 263 (388)
+++|++|++++|+++...+..+..+++|+.|++++|.++ .+|.... ++.+..+++..|..
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcC
Confidence 778999999999998655566667888999999999888 5553211 11666777766653
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.4e-29 Score=245.80 Aligned_cols=241 Identities=23% Similarity=0.234 Sum_probs=220.1
Q ss_pred ChhhhhccccccEEEeecCceeecCc-ccccCCCCCCEEECcCCccccCC--CccccCCCCCCEEEcccCcccccCCcCc
Q 042573 3 PEAVGNLSTRLGKLSVAENQLFGNIP-SGLTNLVNLELLDLGDNQFTGRI--PGSIGDLQKLQRLWLKGNKFWGEIPSSI 79 (388)
Q Consensus 3 p~~~~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 79 (388)
|..+..+++ |++|++++|.+.+.++ ..|.++++|++|++++|.+.+.. +..+.++++|++|++++|.+.+..+..|
T Consensus 318 ~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 318 QISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp GGCGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred hhhhhccCc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 567888887 9999999999986655 45899999999999999998655 7789999999999999999998889999
Q ss_pred cCCCCCCEEeccCCcccccCCc-CCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCC---CCcccccC
Q 042573 80 GNLTSLAILDFAENMLEGSIPS-SLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGP---LPSNFGIL 155 (388)
Q Consensus 80 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~---~~~~~~~l 155 (388)
..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+..++.+ ++|++++|.+++. .+..+..+
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGC
T ss_pred cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccC
Confidence 9999999999999999876554 48999999999999999998888889999999 9999999999862 33578999
Q ss_pred CCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEc
Q 042573 156 KNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNL 235 (388)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l 235 (388)
++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..++.| .|++++|++++..|..+..+++|+.+++
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence 999999999999998889999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCcccCCC
Q 042573 236 SFNHFEGEVPI 246 (388)
Q Consensus 236 ~~n~~~~~~~~ 246 (388)
++|++.|.|+.
T Consensus 555 ~~N~~~c~c~~ 565 (606)
T 3t6q_A 555 RQNPLDCTCSN 565 (606)
T ss_dssp TTCCEECSGGG
T ss_pred CCCCccccCCc
Confidence 99999999874
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=254.47 Aligned_cols=250 Identities=22% Similarity=0.233 Sum_probs=195.9
Q ss_pred cccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 12 RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 12 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
+|++|++++|.+++..+..|..+++|+.|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|..+++|++|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 48889998888888888888888899999999988887778888888889999999888887778888888889999998
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCcCCCcCC----------------------------------------hhhhccC
Q 042573 92 ENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIP----------------------------------------TEVIGLP 131 (388)
Q Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----------------------------------------~~~~~~~ 131 (388)
+|.+....+..|..+++|+.|++++|.++.... ..+..++
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~ 426 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC
Confidence 888887777778888888888888887763210 0122455
Q ss_pred cccceEEccCccCcCCCCc-ccccCCCCCEEEcccCccc-----ccCChhhccccccceecccCccccccCCccCcCCCC
Q 042573 132 SFSIYLNLSQNQLNGPLPS-NFGILKNLGVISLSENKLS-----GEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRG 205 (388)
Q Consensus 132 ~l~~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 205 (388)
.+ +.|++++|.+++..+. .+..+++|+.|++++|.++ +..+..|..+++|+.|++++|.+++..|..+..+++
T Consensus 427 ~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 427 HL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp TC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred cc-ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 55 6666666666643322 3444667777777777765 233455778899999999999999888888899999
Q ss_pred CCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCCCCccccccCCCCCcC
Q 042573 206 IEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGNDNLCG 266 (388)
Q Consensus 206 L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 266 (388)
|+.|+|++|++++..+..+. ++|+.|++++|.+++..|. .+.++..+++.+||+.|.
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICE 562 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCS
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCcccc
Confidence 99999999999987776665 7899999999999887773 466788888889988884
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=6.6e-29 Score=232.26 Aligned_cols=249 Identities=23% Similarity=0.258 Sum_probs=219.7
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
...++.++..++. +|..+. ++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 5678888888874 565444 6899999999999988899999999999999999999988889999999999999999
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCc-cCcCCCCcccccCCCCCEEEcccCccccc
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQN-QLNGPLPSNFGILKNLGVISLSENKLSGE 171 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 171 (388)
|.++...+..|..+++|++|++++|.+....+..+..++.+ +.|++++| .+....+..|.++++|+.|++++|.+++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL-MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc-cEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99998777889999999999999999997666788899999 99999995 45544555789999999999999999854
Q ss_pred CChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC-CcC
Q 042573 172 IPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK-GVF 250 (388)
Q Consensus 172 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~-~~~ 250 (388)
| .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..|..+++|+.|++++|.++...+.. ..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 4 4788999999999999999888999999999999999999999999999999999999999999998654432 456
Q ss_pred CCCccccccCCCCCcCC
Q 042573 251 SNSSAISLDGNDNLCGG 267 (388)
Q Consensus 251 ~~~~~~~~~~~~~~c~~ 267 (388)
+++..+++.+|++.|..
T Consensus 290 ~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDC 306 (452)
T ss_dssp TTCCEEECCSSCEECST
T ss_pred cCCCEEEccCCCcCCCC
Confidence 78889999999998863
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.7e-29 Score=244.13 Aligned_cols=226 Identities=25% Similarity=0.282 Sum_probs=129.1
Q ss_pred CChhhhhc------cccccEEEeecCceeecCcc--cccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccc
Q 042573 2 LPEAVGNL------STRLGKLSVAENQLFGNIPS--GLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWG 73 (388)
Q Consensus 2 ip~~~~~l------~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 73 (388)
||.+++.+ ++ |++|++++|.++ .+|. .|.++++|++|++++|.+.+.+| .+.++++|++|++++|.+.
T Consensus 291 lp~~~~~L~~~~~l~~-L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~- 366 (636)
T 4eco_A 291 LKDDWQALADAPVGEK-IQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT- 366 (636)
T ss_dssp HHHHHHHHHHSGGGGT-CCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-
T ss_pred chHHHHhhhccccCCC-CCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-
Confidence 45555555 54 777777777777 5665 67777777777777777766666 6666677777777777666
Q ss_pred cCCcCccCCCC-CCEEeccCCcccccCCcCCCCCC--CCCEEeCCCCcCCCcCChhhh-------ccCcccceEEccCcc
Q 042573 74 EIPSSIGNLTS-LAILDFAENMLEGSIPSSLGKCQ--NLILLDLSKNNLSGTIPTEVI-------GLPSFSIYLNLSQNQ 143 (388)
Q Consensus 74 ~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~-------~~~~l~~~L~l~~n~ 143 (388)
.+|..+..+++ |++|++++|.++ .+|..+..+. +|+.|++++|.+.+..|..+. .++.+ +.|++++|.
T Consensus 367 ~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L-~~L~Ls~N~ 444 (636)
T 4eco_A 367 EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV-SSINLSNNQ 444 (636)
T ss_dssp ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE-EEEECCSSC
T ss_pred cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC-CEEECcCCc
Confidence 55666666666 777777766666 4555554433 566666666666555555444 44455 555666655
Q ss_pred CcCCCCcccccCCCCCEEEcccCcccccCChhhccc-------cccceecccCccccccCCccCc--CCCCCCEEECCCC
Q 042573 144 LNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSC-------IRLEQLVMNGNFFRGNIPSSFS--SLRGIEKLDLSRN 214 (388)
Q Consensus 144 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n 214 (388)
++...+..+..+++|+.|++++|.++...+..+... ++|+.|++++|.++ .+|..+. .+++|+.|++++|
T Consensus 445 l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSS
T ss_pred cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCC
Confidence 553333334445555555555555552222122211 15555555555555 3444443 4555555555555
Q ss_pred cCccccchhhhcCCCCcEEEc
Q 042573 215 NLSGRIPKYFENFLFLQKLNL 235 (388)
Q Consensus 215 ~l~~~~~~~l~~l~~L~~l~l 235 (388)
++++ +|..+..+++|+.|++
T Consensus 524 ~l~~-ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 524 SFSK-FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp CCSS-CCCGGGGCSSCCEEEC
T ss_pred CCCC-cChhhhcCCCCCEEEC
Confidence 5554 4444445555555555
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.2e-29 Score=231.20 Aligned_cols=250 Identities=24% Similarity=0.283 Sum_probs=220.3
Q ss_pred cccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 12 RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 12 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
....++..+..++ .+|..+. ++++.|+|++|.+....+..|.++++|++|+|++|.+.+..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3667888888888 4565554 789999999999998888999999999999999999998888899999999999999
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCcc-CcCCCCcccccCCCCCEEEcccCcccc
Q 042573 92 ENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQ-LNGPLPSNFGILKNLGVISLSENKLSG 170 (388)
Q Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~ 170 (388)
+|.++...+..|..+++|+.|++++|.+....+..+..++.+ +.|++++|. +....+..|.++++|+.|++++|.++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL-RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc-CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 999997777789999999999999999997777788899999 999999954 55445567899999999999999998
Q ss_pred cCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC-Cc
Q 042573 171 EIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK-GV 249 (388)
Q Consensus 171 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~-~~ 249 (388)
.+| .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..|..+++|+.|++++|+++...+.. ..
T Consensus 199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 444 4788999999999999999888999999999999999999999999999999999999999999999654432 45
Q ss_pred CCCCccccccCCCCCcCC
Q 042573 250 FSNSSAISLDGNDNLCGG 267 (388)
Q Consensus 250 ~~~~~~~~~~~~~~~c~~ 267 (388)
++.+..+++.+||+.|..
T Consensus 278 l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CTTCCEEECCSSCEECSS
T ss_pred ccCCCEEEcCCCCccCCC
Confidence 678889999999999853
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=6.5e-29 Score=222.80 Aligned_cols=230 Identities=24% Similarity=0.299 Sum_probs=204.1
Q ss_pred hhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCC
Q 042573 4 EAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLT 83 (388)
Q Consensus 4 ~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 83 (388)
..+.++++ |++|++++|.+++..|..|.++++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..|..++
T Consensus 70 ~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~ 145 (330)
T 1xku_A 70 GDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLN 145 (330)
T ss_dssp TTTTTCTT-CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred hhhccCCC-CCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCc
Confidence 36788886 999999999999888999999999999999999998 5565543 7999999999999977777899999
Q ss_pred CCCEEeccCCcccc--cCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEE
Q 042573 84 SLAILDFAENMLEG--SIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVI 161 (388)
Q Consensus 84 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L 161 (388)
+|++|++++|.+.. ..+..+..+++|+.|++++|.+. .+|..+. +.+ +.|++++|.+++..+..+..+++|+.|
T Consensus 146 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSL-TELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTC-SEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccC-CEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 99999999999864 66788999999999999999998 4555443 566 999999999998888899999999999
Q ss_pred EcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhc------CCCCcEEEc
Q 042573 162 SLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFEN------FLFLQKLNL 235 (388)
Q Consensus 162 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~l~l 235 (388)
++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.++.+++
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence 99999999888888999999999999999998 77888999999999999999999887777654 367899999
Q ss_pred ccccCcc
Q 042573 236 SFNHFEG 242 (388)
Q Consensus 236 ~~n~~~~ 242 (388)
++|++..
T Consensus 301 ~~N~~~~ 307 (330)
T 1xku_A 301 FSNPVQY 307 (330)
T ss_dssp CSSSSCG
T ss_pred ecCcccc
Confidence 9999875
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-29 Score=244.72 Aligned_cols=264 Identities=22% Similarity=0.243 Sum_probs=216.4
Q ss_pred ChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCC
Q 042573 3 PEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNL 82 (388)
Q Consensus 3 p~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 82 (388)
|..|..+++ |++|+|++|.+++..|..|.++++|++|+|++|.+....+..|.++++|++|+|++|.+.+..|..|..+
T Consensus 92 ~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 170 (597)
T 3oja_B 92 TYAFAYAHT-IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170 (597)
T ss_dssp TTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred hHHhcCCCC-CCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence 457888886 9999999999999888889999999999999999996666678999999999999999998888899999
Q ss_pred CCCCEEeccCCcccccCCcCCCCC-------------------------------------CCCCEEeCCCCcCCCcCCh
Q 042573 83 TSLAILDFAENMLEGSIPSSLGKC-------------------------------------QNLILLDLSKNNLSGTIPT 125 (388)
Q Consensus 83 ~~L~~L~l~~n~l~~~~~~~~~~l-------------------------------------~~L~~L~l~~n~~~~~~~~ 125 (388)
++|++|++++|.+++.....+.++ ++|+.|++++|.+++ +.
T Consensus 171 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~ 248 (597)
T 3oja_B 171 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TA 248 (597)
T ss_dssp TTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CG
T ss_pred CcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--Ch
Confidence 999999999999885432222221 246666666666654 36
Q ss_pred hhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCC
Q 042573 126 EVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRG 205 (388)
Q Consensus 126 ~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 205 (388)
.+..++.+ +.|++++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++
T Consensus 249 ~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~ 325 (597)
T 3oja_B 249 WLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 325 (597)
T ss_dssp GGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred hhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCC
Confidence 68888999 999999999999889999999999999999999986 4556677999999999999998 66777888999
Q ss_pred CCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCCCCccccccCCCCCcCCCCCCCCCCC
Q 042573 206 IEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGNDNLCGGISDLHLSTC 276 (388)
Q Consensus 206 L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~c 276 (388)
|+.|++++|.+++.. +..+++|+.|++++|++.|.+.. .++.......+..++..|+.........|
T Consensus 326 L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~~~~~~~~c 392 (597)
T 3oja_B 326 LENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDYQLEHGLC 392 (597)
T ss_dssp CSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTTCEEETTEE
T ss_pred CCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcchhccCCcc
Confidence 999999999998663 56778999999999999987642 34445555556677778876544333333
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.6e-28 Score=239.62 Aligned_cols=95 Identities=24% Similarity=0.296 Sum_probs=78.0
Q ss_pred CChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC-CcC
Q 042573 172 IPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK-GVF 250 (388)
Q Consensus 172 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~-~~~ 250 (388)
.|..|..+++|+.|++++|++++..|..|.++++|++|+|++|++++..+..+..+++|+.|++++|++++..+.. ..+
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 4455667788888999999888888888888999999999999999888888888999999999999998876643 223
Q ss_pred -CCCccccccCCCCCcC
Q 042573 251 -SNSSAISLDGNDNLCG 266 (388)
Q Consensus 251 -~~~~~~~~~~~~~~c~ 266 (388)
.+++.+++.+||+.|.
T Consensus 566 ~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 566 PSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CTTCCEEECTTCCBCCS
T ss_pred hCcCCEEEeeCCCCccc
Confidence 5678889999999884
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=5.9e-29 Score=244.58 Aligned_cols=260 Identities=23% Similarity=0.222 Sum_probs=190.6
Q ss_pred hhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCc----------------------------cccCCCcccc
Q 042573 5 AVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQ----------------------------FTGRIPGSIG 56 (388)
Q Consensus 5 ~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~----------------------------~~~~~~~~~~ 56 (388)
.+..+++ |++|++++|.+++..+..|.++++|++|++++|. +.+..|..|.
T Consensus 324 ~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 324 SFQWLKC-LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTCTT-CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hcccCCC-CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 4556665 8888888888887777777777777777766553 3334455566
Q ss_pred CCCCCCEEEcccCcccccCC-cCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCC--CcCChhhhccCcc
Q 042573 57 DLQKLQRLWLKGNKFWGEIP-SSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLS--GTIPTEVIGLPSF 133 (388)
Q Consensus 57 ~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~l 133 (388)
.+++|++|++++|.+.+.++ ..|..+++|++|++++|.+....+..|..+++|+.|++++|.+. +..|..+..++.+
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 66666666666666655444 45666666777777776666666666667777777777776664 3566777778888
Q ss_pred cceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCC--------hhhccccccceecccCccccccCCccCcCCCC
Q 042573 134 SIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIP--------SSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRG 205 (388)
Q Consensus 134 ~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 205 (388)
+.|++++|.+++..+..|..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.++...+..+..+++
T Consensus 483 -~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 483 -TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561 (680)
T ss_dssp -CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred -CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence 888888888887777778888888888888888875422 23677888888888888888555567888888
Q ss_pred CCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC-C-cCCCCccccccCCCCCcC
Q 042573 206 IEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK-G-VFSNSSAISLDGNDNLCG 266 (388)
Q Consensus 206 L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~-~-~~~~~~~~~~~~~~~~c~ 266 (388)
|+.|++++|++++..+..|..+++|+.|++++|.+++..+.. . .++++..+++.+||+.|.
T Consensus 562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 999999999988777777888888999999999888654421 1 467788889999999885
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=4.2e-29 Score=242.50 Aligned_cols=254 Identities=22% Similarity=0.201 Sum_probs=176.8
Q ss_pred hhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCccccc--CCcCccCC
Q 042573 5 AVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGE--IPSSIGNL 82 (388)
Q Consensus 5 ~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l 82 (388)
.+..+++ |++|++++|.+ +.+| .+ .+++|++|++++|...... .+..+++|++|++++|.+.+. .+..+..+
T Consensus 302 ~l~~~~~-L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 302 DVPKHFK-WQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp CCCTTCC-CSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred hcccccc-CCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 5566665 88888888888 4566 34 7777777777777543322 456777777777777777654 36667777
Q ss_pred CCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCC-hhhhccCcccceEEccCccCcCCCCcccccCCCCCEE
Q 042573 83 TSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIP-TEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVI 161 (388)
Q Consensus 83 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L 161 (388)
++|++|++++|.+.. +|..+..+++|+.|++++|.+.+..+ ..+..++.+ +.|++++|.+++..+..+..+++|+.|
T Consensus 376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCCCccchhhhcCCCCCCEE
Confidence 777777777777664 45667777777777777777765555 456667777 777777777776667777777777777
Q ss_pred EcccCcccc-cCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccC
Q 042573 162 SLSENKLSG-EIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHF 240 (388)
Q Consensus 162 ~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~ 240 (388)
++++|.+++ ..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 777777765 3566677777777777777777766677777777777777777777777777777777777777777777
Q ss_pred cccCCCCCcCC-CCccccccCCCCCcC
Q 042573 241 EGEVPIKGVFS-NSSAISLDGNDNLCG 266 (388)
Q Consensus 241 ~~~~~~~~~~~-~~~~~~~~~~~~~c~ 266 (388)
+...+....++ ++..+++.+|+..|.
T Consensus 534 ~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 534 ETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred cccCHhHhhhcccCcEEEccCCCcccC
Confidence 74322223333 466777777777764
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=4.3e-29 Score=242.40 Aligned_cols=232 Identities=24% Similarity=0.204 Sum_probs=125.3
Q ss_pred hccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccC--CCccccCCCCCCEEEcccCcccccCCcCccCCCCC
Q 042573 8 NLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGR--IPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSL 85 (388)
Q Consensus 8 ~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 85 (388)
.+++ |++|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ +|..+..+++|
T Consensus 326 ~l~~-L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L 401 (606)
T 3vq2_A 326 DLPF-LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEEL 401 (606)
T ss_dssp CCSS-CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTC
T ss_pred CCCc-cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCC
Confidence 4443 555555555433222 344555555555555555433 24455555555555555555542 33455555555
Q ss_pred CEEeccCCcccccCC-cCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcC-CCCcccccCCCCCEEEc
Q 042573 86 AILDFAENMLEGSIP-SSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNG-PLPSNFGILKNLGVISL 163 (388)
Q Consensus 86 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L 163 (388)
++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..++.+ +.|++++|.+++ ..|..+..+++|+.|++
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-CEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence 555555555554444 345555555555555555555555555555555 555555555554 24555555555555555
Q ss_pred ccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCC-CCcEEEcccccCcc
Q 042573 164 SENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFL-FLQKLNLSFNHFEG 242 (388)
Q Consensus 164 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~l~l~~n~~~~ 242 (388)
++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|++.|
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 555555555555555555555555555555555555555555555555555555 3333355554 35555555555555
Q ss_pred cCC
Q 042573 243 EVP 245 (388)
Q Consensus 243 ~~~ 245 (388)
.|+
T Consensus 560 ~c~ 562 (606)
T 3vq2_A 560 ICE 562 (606)
T ss_dssp SST
T ss_pred CCc
Confidence 554
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.3e-28 Score=220.99 Aligned_cols=249 Identities=19% Similarity=0.246 Sum_probs=210.1
Q ss_pred ChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCC
Q 042573 3 PEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNL 82 (388)
Q Consensus 3 p~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 82 (388)
|..+.++++ |++|++++|.+++..|..|.++++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..|..+
T Consensus 71 ~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l 146 (332)
T 2ft3_A 71 KDDFKGLQH-LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGL 146 (332)
T ss_dssp TTTTTTCTT-CCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSC
T ss_pred HhHhhCCCC-CcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCC
Confidence 457888987 999999999999988999999999999999999998 5565554 899999999999997777789999
Q ss_pred CCCCEEeccCCccc--ccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCE
Q 042573 83 TSLAILDFAENMLE--GSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGV 160 (388)
Q Consensus 83 ~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~ 160 (388)
++|++|++++|.++ +..+..+..+ +|+.|++++|.+++ +|..+. +.+ +.|++++|.+++..+..+..+++|+.
T Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L-~~L~l~~n~i~~~~~~~l~~l~~L~~ 221 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETL-NELHLDHNKIQAIELEDLLRYSKLYR 221 (332)
T ss_dssp SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSC-SCCBCCSSCCCCCCTTSSTTCTTCSC
T ss_pred ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCC-CEEECCCCcCCccCHHHhcCCCCCCE
Confidence 99999999999996 3677888888 99999999999984 555443 566 89999999999888889999999999
Q ss_pred EEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcC------CCCcEEE
Q 042573 161 ISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENF------LFLQKLN 234 (388)
Q Consensus 161 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l------~~L~~l~ 234 (388)
|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+... +.|+.++
T Consensus 222 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred EECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence 999999999888888999999999999999998 778889999999999999999998877776543 6789999
Q ss_pred cccccCccc-CCC--CCcCCCCccccccCC
Q 042573 235 LSFNHFEGE-VPI--KGVFSNSSAISLDGN 261 (388)
Q Consensus 235 l~~n~~~~~-~~~--~~~~~~~~~~~~~~~ 261 (388)
+++|++... ++. ...++.+..+++.+|
T Consensus 301 l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred eecCcccccccCcccccccchhhhhhcccc
Confidence 999998742 221 133445555555444
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1e-28 Score=226.68 Aligned_cols=245 Identities=20% Similarity=0.185 Sum_probs=170.8
Q ss_pred hccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCE
Q 042573 8 NLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAI 87 (388)
Q Consensus 8 ~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 87 (388)
.+++ +++|++++|.++...+..|.++++|++|++++|.+....+..|.++++|++|+|++|.+.+..|..|..+++|++
T Consensus 43 ~l~~-l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNN-QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCC-CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCC-ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3454 999999999999877777899999999999999999877889999999999999999999888888999999999
Q ss_pred EeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCc
Q 042573 88 LDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENK 167 (388)
Q Consensus 88 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 167 (388)
|++++|.++...+..|.++++|++|++++|.+.+..+..+..++.+ +.|++++|.+++.. +..+++|+.|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL-QNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC-CEEECCSSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC-CEEECCCCcCCccc---cccccccceeeccccc
Confidence 9999999996655667999999999999999997777788999999 99999999998653 2333444444444333
Q ss_pred cccc------------------CChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCC
Q 042573 168 LSGE------------------IPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLF 229 (388)
Q Consensus 168 l~~~------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 229 (388)
+++. .+. ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++
T Consensus 198 l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 198 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp CSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred ccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 3210 010 0123445555555544432 33444455555555555555444555555555
Q ss_pred CcEEEcccccCcccCCCCCcCCCCccccccCC
Q 042573 230 LQKLNLSFNHFEGEVPIKGVFSNSSAISLDGN 261 (388)
Q Consensus 230 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 261 (388)
|+.|++++|.+++.......++++..+++.+|
T Consensus 274 L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 274 LERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp CCEEECCSSCCCEEECSSSCCTTCCEEECCSS
T ss_pred CCEEECCCCcCcccCcccCCCCCCCEEECCCC
Confidence 55555555555443222233344444444444
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.8e-29 Score=219.55 Aligned_cols=249 Identities=23% Similarity=0.290 Sum_probs=216.4
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCccccc--CCcCccCCCCCCEEec
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGE--IPSSIGNLTSLAILDF 90 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l 90 (388)
-+.++.+++.++. +|..+. ++|++|++++|.+....+..|.++++|++|+|++|.+... .+..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 5688999999884 555443 6899999999999965566689999999999999998733 3566778999999999
Q ss_pred cCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCC-hhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCccc
Q 042573 91 AENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIP-TEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLS 169 (388)
Q Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 169 (388)
++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..++.+ ++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC-CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCC-CEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 999998 466778999999999999999986544 578889999 99999999999888888999999999999999998
Q ss_pred c-cCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC-
Q 042573 170 G-EIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK- 247 (388)
Q Consensus 170 ~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~- 247 (388)
+ ..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 6 57888999999999999999999888999999999999999999999888888999999999999999999876643
Q ss_pred CcC-CCCccccccCCCCCcC
Q 042573 248 GVF-SNSSAISLDGNDNLCG 266 (388)
Q Consensus 248 ~~~-~~~~~~~~~~~~~~c~ 266 (388)
..+ ..+..+++.+|+..|.
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCTTCCEEECTTCCEECS
T ss_pred HhhhccCCEEEccCCCeecc
Confidence 334 4788999999998774
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.5e-29 Score=222.52 Aligned_cols=212 Identities=23% Similarity=0.326 Sum_probs=197.4
Q ss_pred CCChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCcc
Q 042573 1 MLPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIG 80 (388)
Q Consensus 1 ~ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 80 (388)
.||..++++++ |++|+|++|.++ .+|..|.++++|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|..+.
T Consensus 95 ~lp~~l~~l~~-L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 95 QFPDQAFRLSH-LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp SCCSCGGGGTT-CSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred hcChhhhhCCC-CCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 47889999986 999999999999 78888999999999999999998 7898999999999999999988888888776
Q ss_pred C---------CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcc
Q 042573 81 N---------LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSN 151 (388)
Q Consensus 81 ~---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~ 151 (388)
. +++|++|++++|.++ .+|..+.++++|+.|++++|.+. .+|..+..++.+ +.|++++|.+.+..|..
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L-~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL-EELDLRGCTALRNYPPI 248 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC-CEEECTTCTTCCBCCCC
T ss_pred hccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC-CEEECcCCcchhhhHHH
Confidence 4 999999999999999 78889999999999999999999 577789999999 99999999999999999
Q ss_pred cccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCcc
Q 042573 152 FGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSG 218 (388)
Q Consensus 152 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 218 (388)
+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++..+.+..
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998876653
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=5.6e-28 Score=237.65 Aligned_cols=232 Identities=23% Similarity=0.193 Sum_probs=158.6
Q ss_pred hhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCC
Q 042573 5 AVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTS 84 (388)
Q Consensus 5 ~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 84 (388)
.|.++++ |++|++++|.+++..|..|.++++|++|++++|.+....+..|+++++|++|++++|.+.+..+..|.++++
T Consensus 44 ~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 44 NFTRYSQ-LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGTT-CSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HHhCCCc-CcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 4666665 777777777777777777777777777777777777555556777777777777777777666667777777
Q ss_pred CCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhh--ccCcccceEEccCccCcCCCCcccccC-------
Q 042573 85 LAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVI--GLPSFSIYLNLSQNQLNGPLPSNFGIL------- 155 (388)
Q Consensus 85 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~l~~~L~l~~n~~~~~~~~~~~~l------- 155 (388)
|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .++.+ +.|++++|.+++..+..+..+
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL-KKLELSSNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE-SEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc-cEEECCCCcccccChhhhhhhhhhhhhh
Confidence 88888877777776677777777788888877777755544443 33566 777777777776655554433
Q ss_pred --------------------CCCCEEEcccCcccccCChhhccccc--cceecccCccccccCCccCcCCCCCCEEECCC
Q 042573 156 --------------------KNLGVISLSENKLSGEIPSSLGSCIR--LEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSR 213 (388)
Q Consensus 156 --------------------~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 213 (388)
++|+.|++++|.+++..+..+..++. |+.|++++|.+.+..+..+..+++|++|++++
T Consensus 202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence 34556666666666666666666544 77777777777766666777777777777777
Q ss_pred CcCccccchhhhcCCCCcEEEcccc
Q 042573 214 NNLSGRIPKYFENFLFLQKLNLSFN 238 (388)
Q Consensus 214 n~l~~~~~~~l~~l~~L~~l~l~~n 238 (388)
|.+++..+..+..+++|+.+++++|
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 282 NNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CccCccChhhhcCCCCccEEeccch
Confidence 7776666555555555555555444
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=4.7e-28 Score=232.74 Aligned_cols=131 Identities=21% Similarity=0.208 Sum_probs=85.1
Q ss_pred ccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCccccc--CChhhccccccceecccCccccccCC-ccCcCCCC
Q 042573 129 GLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGE--IPSSLGSCIRLEQLVMNGNFFRGNIP-SSFSSLRG 205 (388)
Q Consensus 129 ~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~ 205 (388)
.++.+ ++|++++|.+++..+..+.++++|+.|++++|.+++. .|..+..+++|+.|++++|.+++.+| ..+..+++
T Consensus 351 ~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 351 SPSSF-TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SCCCC-CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCCc-eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 34556 7888888888877778888888888888888888753 23557778888888888888876344 34566666
Q ss_pred CCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCCCCccccccCCC
Q 042573 206 IEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGND 262 (388)
Q Consensus 206 L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
|++|++++|++++..+..+. ++|+.|++++|.++...+....++.+..+++.+|.
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC
Confidence 77777777766654443332 45666666666655322222334455555555544
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=244.87 Aligned_cols=119 Identities=24% Similarity=0.238 Sum_probs=57.8
Q ss_pred hhhhccccccEEEeecCceeec-CcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcC--ccC
Q 042573 5 AVGNLSTRLGKLSVAENQLFGN-IPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSS--IGN 81 (388)
Q Consensus 5 ~~~~l~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~ 81 (388)
.|.++++ |++|+|++|...+. .|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+.. |.+
T Consensus 43 ~~~~l~~-L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 43 SFPFLEQ-LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SCSSCCS-CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred HCccccc-CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 3344433 44444444422222 2444555555555555555555444555555555555555555554433332 555
Q ss_pred CCCCCEEeccCCcccccCC-cCCCCCCCCCEEeCCCCcCCCcCC
Q 042573 82 LTSLAILDFAENMLEGSIP-SSLGKCQNLILLDLSKNNLSGTIP 124 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~ 124 (388)
+++|++|++++|.+.+..+ ..|.++++|+.|++++|.+.+..+
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 5555555555555544322 345555555555555555544333
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=8e-28 Score=210.12 Aligned_cols=229 Identities=22% Similarity=0.212 Sum_probs=185.9
Q ss_pred EEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCc
Q 042573 15 KLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENM 94 (388)
Q Consensus 15 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 94 (388)
+++..+..++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3455555555 3454443 578888888888886666678888888888888888887777788888888888888888
Q ss_pred ccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCC-CCcccccCCCCCEEEcccCcccccCC
Q 042573 95 LEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGP-LPSNFGILKNLGVISLSENKLSGEIP 173 (388)
Q Consensus 95 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 173 (388)
++...+..|.++++|++|++++|.+.+..+..+..++.+ +.|++++|.+++. .|..+..+++|+.|++++|.+++..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 887777788888888888888888886655567788888 8888888888764 57889999999999999999988777
Q ss_pred hhhccccccc----eecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCC
Q 042573 174 SSLGSCIRLE----QLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKG 248 (388)
Q Consensus 174 ~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~ 248 (388)
..+..+++|+ .|++++|.+.+..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|+++|.|+...
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 7787777777 899999999866665554 4589999999999998877788999999999999999999987543
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.5e-28 Score=229.81 Aligned_cols=251 Identities=23% Similarity=0.269 Sum_probs=162.1
Q ss_pred hhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccc-cCCcCccCC
Q 042573 4 EAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWG-EIPSSIGNL 82 (388)
Q Consensus 4 ~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l 82 (388)
..+..+++ |++|+|++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|+|++|.+.+ ..|..|..+
T Consensus 39 ~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 39 SDILSLSK-LRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp HHHTTCTT-CCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred hhcccccc-ccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccC
Confidence 56777776 888888888888877888888888888888888887 34443 67778888888887765 356677777
Q ss_pred CCCCEEeccCCccc-------------------------ccCCcCCCCCC------------------------------
Q 042573 83 TSLAILDFAENMLE-------------------------GSIPSSLGKCQ------------------------------ 107 (388)
Q Consensus 83 ~~L~~L~l~~n~l~-------------------------~~~~~~~~~l~------------------------------ 107 (388)
++|++|++++|.+. +..|..+..+.
T Consensus 115 ~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 194 (520)
T 2z7x_B 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194 (520)
T ss_dssp TTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEE
T ss_pred CcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceee
Confidence 77777777766553 12233333311
Q ss_pred -----------------------------------------------------CCCEEeCCCCcCCCcCChhh-------
Q 042573 108 -----------------------------------------------------NLILLDLSKNNLSGTIPTEV------- 127 (388)
Q Consensus 108 -----------------------------------------------------~L~~L~l~~n~~~~~~~~~~------- 127 (388)
+|+.|++++|.+.+.+|..+
T Consensus 195 L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~ 274 (520)
T 2z7x_B 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274 (520)
T ss_dssp CCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCC
T ss_pred ccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccccc
Confidence 45566666665554444332
Q ss_pred ----------------------------------------------hccCcccceEEccCccCcCCCCcccccCCCCCEE
Q 042573 128 ----------------------------------------------IGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVI 161 (388)
Q Consensus 128 ----------------------------------------------~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L 161 (388)
..++.+ ++|++++|.+++..|..+..+++|+.|
T Consensus 275 l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L 353 (520)
T 2z7x_B 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF-LHLDFSNNLLTDTVFENCGHLTELETL 353 (520)
T ss_dssp CCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC-CEEECCSSCCCTTTTTTCCCCSSCCEE
T ss_pred CceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcc-cEEEeECCccChhhhhhhccCCCCCEE
Confidence 345556 778888888887777777778888888
Q ss_pred EcccCcccc--cCChhhccccccceecccCccccccCCc-cCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccc
Q 042573 162 SLSENKLSG--EIPSSLGSCIRLEQLVMNGNFFRGNIPS-SFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFN 238 (388)
Q Consensus 162 ~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n 238 (388)
++++|.+++ ..|..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|
T Consensus 354 ~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N 431 (520)
T 2z7x_B 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN 431 (520)
T ss_dssp ECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred EccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence 888888775 3445677777788888888877763443 355566666666666666554444332 45555555555
Q ss_pred cCcccCCC-CCcCCCCccccccCCC
Q 042573 239 HFEGEVPI-KGVFSNSSAISLDGND 262 (388)
Q Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (388)
.++ .+|. ...++.+..+++.+|.
T Consensus 432 ~l~-~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 432 KIK-SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred ccc-ccchhhhcCCCCCEEECCCCc
Confidence 555 2221 2234444555554443
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.5e-28 Score=237.24 Aligned_cols=98 Identities=28% Similarity=0.327 Sum_probs=90.1
Q ss_pred CcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcC-
Q 042573 149 PSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENF- 227 (388)
Q Consensus 149 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l- 227 (388)
|..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++..|..+..+
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 566 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 566 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC
T ss_pred chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh
Confidence 4456677889999999999998889999999999999999999998889999999999999999999999999999988
Q ss_pred CCCcEEEcccccCcccCCC
Q 042573 228 LFLQKLNLSFNHFEGEVPI 246 (388)
Q Consensus 228 ~~L~~l~l~~n~~~~~~~~ 246 (388)
.+|+.|++++|+|.|+|..
T Consensus 567 ~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 567 SSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTCCEEECTTCCBCCSGGG
T ss_pred CcCCEEEeeCCCCcccCCc
Confidence 5899999999999999874
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=2.3e-29 Score=223.72 Aligned_cols=231 Identities=21% Similarity=0.246 Sum_probs=179.0
Q ss_pred CChhhhhccccccEEEeecCcee-ecCccccc-------CCCCCCEEECcCCccccCCCccc--cCCCCCCEEEcccCcc
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLF-GNIPSGLT-------NLVNLELLDLGDNQFTGRIPGSI--GDLQKLQRLWLKGNKF 71 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~~ 71 (388)
+|..++.. |++|+|++|.++ ..+|..+. ++++|++|++++|.+++..|..+ ..+++|++|+|++|.+
T Consensus 57 ~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 57 DLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred cHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 46666544 888888888884 34555444 68899999999999887777765 7888999999999988
Q ss_pred cccCCcCccCC-----CCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCc--CChhh--hccCcccceEEccCc
Q 042573 72 WGEIPSSIGNL-----TSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGT--IPTEV--IGLPSFSIYLNLSQN 142 (388)
Q Consensus 72 ~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~--~~~~~l~~~L~l~~n 142 (388)
++. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+ ..++.+ ++|++++|
T Consensus 134 ~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-~~L~L~~N 211 (312)
T 1wwl_A 134 ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL-QVLALRNA 211 (312)
T ss_dssp SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC-CEEECTTS
T ss_pred cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC-CEEECCCC
Confidence 866 7767666 8899999999998877778888899999999998887643 23333 677787 88999998
Q ss_pred cCcCC---CCcccccCCCCCEEEcccCcccccCC-hhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCcc
Q 042573 143 QLNGP---LPSNFGILKNLGVISLSENKLSGEIP-SSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSG 218 (388)
Q Consensus 143 ~~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 218 (388)
.+++. ....+..+++|+.|++++|.+++..| ..+..+++|+.|++++|.++ .+|..+. ++|++|++++|++++
T Consensus 212 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS
T ss_pred cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC
Confidence 88732 22334567889999999998887664 34556788899999999888 6666665 788899999998886
Q ss_pred ccchhhhcCCCCcEEEcccccCcc
Q 042573 219 RIPKYFENFLFLQKLNLSFNHFEG 242 (388)
Q Consensus 219 ~~~~~l~~l~~L~~l~l~~n~~~~ 242 (388)
. |. +..+++|+.|++++|++++
T Consensus 289 ~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 289 N-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C-CC-TTTSCEEEEEECTTCTTTC
T ss_pred C-hh-HhhCCCCCEEeccCCCCCC
Confidence 6 44 7788888899999888875
No 44
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.4e-28 Score=243.77 Aligned_cols=253 Identities=21% Similarity=0.212 Sum_probs=205.6
Q ss_pred CChhhhhccccccEEEeecCceee-----------------cCccccc--CCCCCCEEECcCCccccCCCccccCCCCCC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFG-----------------NIPSGLT--NLVNLELLDLGDNQFTGRIPGSIGDLQKLQ 62 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 62 (388)
||.+++++++ |++|+|++|.+++ .+|..+. ++++|++|+|++|.+.+.+|..|.++++|+
T Consensus 440 IP~~l~~L~~-L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTK-LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCC-CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 7999999987 9999999999998 3788876 999999999999999989999999999999
Q ss_pred EEEcccCc-ccc-cCCcCccC-------CCCCCEEeccCCcccccCCc--CCCCCCCCCEEeCCCCcCCCcCChhhhccC
Q 042573 63 RLWLKGNK-FWG-EIPSSIGN-------LTSLAILDFAENMLEGSIPS--SLGKCQNLILLDLSKNNLSGTIPTEVIGLP 131 (388)
Q Consensus 63 ~L~L~~n~-~~~-~~~~~~~~-------l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 131 (388)
+|+|++|. +++ .+|..+.. +++|++|++++|.++ .+|. .+.++++|+.|++++|.+. .+| .+..++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 99999998 877 67765554 459999999999999 7888 8999999999999999998 777 888899
Q ss_pred cccceEEccCccCcCCCCcccccCCC-CCEEEcccCcccccCChhhccccc--cceecccCccccccCCccC---c--CC
Q 042573 132 SFSIYLNLSQNQLNGPLPSNFGILKN-LGVISLSENKLSGEIPSSLGSCIR--LEQLVMNGNFFRGNIPSSF---S--SL 203 (388)
Q Consensus 132 ~l~~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~---~--~l 203 (388)
.+ +.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++. |+.|++++|.+.+.+|... . .+
T Consensus 596 ~L-~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 596 KL-TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp EE-SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred cc-eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 98 89999999999 77888899998 999999999998 67776666544 8999999998876655322 2 33
Q ss_pred CCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCC-c--------CCCCccccccCCC
Q 042573 204 RGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKG-V--------FSNSSAISLDGND 262 (388)
Q Consensus 204 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~-~--------~~~~~~~~~~~~~ 262 (388)
++|+.|++++|.++...+..+..+++|+.|++++|.++ .+|... . ++++..+++.+|.
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC
Confidence 57888888888888544444557788888888888887 444321 1 1156666666664
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.3e-28 Score=244.00 Aligned_cols=189 Identities=22% Similarity=0.372 Sum_probs=135.3
Q ss_pred CCccccCCCCCCEEEcccCcccc-----------------cCCcCcc--CCCCCCEEeccCCcccccCCcCCCCCCCCCE
Q 042573 51 IPGSIGDLQKLQRLWLKGNKFWG-----------------EIPSSIG--NLTSLAILDFAENMLEGSIPSSLGKCQNLIL 111 (388)
Q Consensus 51 ~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 111 (388)
+|..|+++++|++|+|++|.+++ .+|..+. ++++|++|+|++|.+.+.+|..+.++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56667777777777777777776 2677666 7777777777777777777777777777777
Q ss_pred EeCCCCc-CCC-cCChhhhccC-------cccceEEccCccCcCCCCc--ccccCCCCCEEEcccCcccccCChhhcccc
Q 042573 112 LDLSKNN-LSG-TIPTEVIGLP-------SFSIYLNLSQNQLNGPLPS--NFGILKNLGVISLSENKLSGEIPSSLGSCI 180 (388)
Q Consensus 112 L~l~~n~-~~~-~~~~~~~~~~-------~l~~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 180 (388)
|++++|+ +++ .+|..+..++ .+ +.|++++|.++ .+|. .+.++++|+.|++++|.++ .+| .+..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L-~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKI-QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTC-CEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCc-cEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 7777776 665 5666665554 66 77777777777 5666 6777777777777777777 556 677777
Q ss_pred ccceecccCccccccCCccCcCCCC-CCEEECCCCcCccccchhhhcCC--CCcEEEcccccCcccCC
Q 042573 181 RLEQLVMNGNFFRGNIPSSFSSLRG-IEKLDLSRNNLSGRIPKYFENFL--FLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~l~l~~n~~~~~~~ 245 (388)
+|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..+. +|+.|++++|.+.+.+|
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence 7777777777777 66666777777 777777777777 5555555443 37777777777766544
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.8e-28 Score=231.41 Aligned_cols=114 Identities=23% Similarity=0.267 Sum_probs=101.7
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||..++ ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|+|++|.++ .+|.. .
T Consensus 15 ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 15 VPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp CCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred cccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence 676665 45999999999999888889999999999999999999888899999999999999999998 45554 8
Q ss_pred CCCCCEEeccCCcccc-cCCcCCCCCCCCCEEeCCCCcCCC
Q 042573 82 LTSLAILDFAENMLEG-SIPSSLGKCQNLILLDLSKNNLSG 121 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~ 121 (388)
+++|++|++++|.+++ .+|..+.++++|++|++++|.+.+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 9999999999999987 468899999999999999988763
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=8e-28 Score=231.14 Aligned_cols=114 Identities=22% Similarity=0.234 Sum_probs=94.2
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||..++ .+|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+|++|.++ .+|.. .
T Consensus 46 ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 46 VPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp CCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred CCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 565543 45999999999998888888999999999999999998777888889999999999999887 45554 7
Q ss_pred CCCCCEEeccCCccccc-CCcCCCCCCCCCEEeCCCCcCCC
Q 042573 82 LTSLAILDFAENMLEGS-IPSSLGKCQNLILLDLSKNNLSG 121 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~ 121 (388)
+++|++|++++|.++.. .|..|.++++|++|++++|.+..
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 88999999999988863 45788888889998888888764
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=6.8e-29 Score=233.54 Aligned_cols=227 Identities=22% Similarity=0.190 Sum_probs=193.3
Q ss_pred CChhhhhccc---cccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcC
Q 042573 2 LPEAVGNLST---RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSS 78 (388)
Q Consensus 2 ip~~~~~l~~---~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 78 (388)
+|..+..+.. +|++|+|++|.+++..|..|.++++|++|+|++|.+++..| +..+++|++|+|++|.+++..
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--- 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--- 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---
Confidence 4555555441 49999999999999888899999999999999999986554 889999999999999987543
Q ss_pred ccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccc-cCCC
Q 042573 79 IGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFG-ILKN 157 (388)
Q Consensus 79 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~-~l~~ 157 (388)
..++|++|++++|.+++..+. .+++|+.|++++|.+++..+..+..++.+ +.|++++|.+++..|..+. .+++
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTT
T ss_pred --CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCc
Confidence 238999999999999876554 45789999999999998888888899999 9999999999987777775 7899
Q ss_pred CCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEccc
Q 042573 158 LGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSF 237 (388)
Q Consensus 158 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~ 237 (388)
|+.|+|++|.+++..+ +..+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.+++++
T Consensus 171 L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTT
T ss_pred ccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCC
Confidence 9999999999986633 3468999999999999996544 48889999999999999995 677788899999999999
Q ss_pred ccCccc
Q 042573 238 NHFEGE 243 (388)
Q Consensus 238 n~~~~~ 243 (388)
|++.|.
T Consensus 247 N~l~c~ 252 (487)
T 3oja_A 247 NGFHCG 252 (487)
T ss_dssp CCBCHH
T ss_pred CCCcCc
Confidence 999854
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=5.8e-28 Score=231.73 Aligned_cols=257 Identities=19% Similarity=0.198 Sum_probs=165.5
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||..++ ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+..|..
T Consensus 20 ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 20 IPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp CCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred ccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 555443 34888888888887777777777888888888888877666777777788888888888777666666777
Q ss_pred CCCCCEEeccCCcccc-cCCcCCCCCCCCCEEeCCCCcCCCcCC-hhhhccCcccceEEccCccCcCCCCccccc-----
Q 042573 82 LTSLAILDFAENMLEG-SIPSSLGKCQNLILLDLSKNNLSGTIP-TEVIGLPSFSIYLNLSQNQLNGPLPSNFGI----- 154 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~----- 154 (388)
+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.++ ..+..++.+ +.|++++|.+++..|..+..
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL-NELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE-EEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc-CeeeccCCcccccChhhhhccccCc
Confidence 7788888888777764 245567777777777777776332333 455566666 66666666655444433322
Q ss_pred -------------------CCCCCEEEcccCccccc--------------------------------------------
Q 042573 155 -------------------LKNLGVISLSENKLSGE-------------------------------------------- 171 (388)
Q Consensus 155 -------------------l~~L~~L~L~~n~l~~~-------------------------------------------- 171 (388)
+++|+.|++++|.+++.
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 34444444444444321
Q ss_pred ---------------------------------------------------------------------CChhh-ccccc
Q 042573 172 ---------------------------------------------------------------------IPSSL-GSCIR 181 (388)
Q Consensus 172 ---------------------------------------------------------------------~~~~~-~~l~~ 181 (388)
+|..+ ..+++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~ 335 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcc
Confidence 12222 34667
Q ss_pred cceecccCccccccCC---ccCcCCCCCCEEECCCCcCccccc--hhhhcCCCCcEEEcccccCcccCCCCCcCCCCccc
Q 042573 182 LEQLVMNGNFFRGNIP---SSFSSLRGIEKLDLSRNNLSGRIP--KYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAI 256 (388)
Q Consensus 182 L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~ 256 (388)
|+.|++++|.+.+..| ..+..+++|++|++++|++++..+ ..+..+++|+.|++++|+++.........++++.+
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEE
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEE
Confidence 7777777777765543 235667778888888887775532 45777788888888888877432223445566666
Q ss_pred cccCCC
Q 042573 257 SLDGND 262 (388)
Q Consensus 257 ~~~~~~ 262 (388)
++.+|.
T Consensus 416 ~Ls~N~ 421 (549)
T 2z81_A 416 NLSSTG 421 (549)
T ss_dssp ECTTSC
T ss_pred ECCCCC
Confidence 666654
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.4e-28 Score=221.16 Aligned_cols=251 Identities=20% Similarity=0.170 Sum_probs=182.1
Q ss_pred hccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCE
Q 042573 8 NLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAI 87 (388)
Q Consensus 8 ~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 87 (388)
.++. ....+++++.++. +|..+. ++|++|++++|.++...+..|.++++|++|++++|.+++..+..|.++++|++
T Consensus 29 ~C~~-~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDR-NGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECT-TSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCC-CeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3444 5567777788774 454443 57888888888888666667888888888888888888777778888888888
Q ss_pred EeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCC-hhhhccCcccceEEccCc-cCcCCCCcccccCCCCCEEEccc
Q 042573 88 LDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIP-TEVIGLPSFSIYLNLSQN-QLNGPLPSNFGILKNLGVISLSE 165 (388)
Q Consensus 88 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~ 165 (388)
|++++|.++...+..+.++++|++|++++|++..... ..+..++.+ +.|++++| .+....+..+.++++|+.|++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL-QILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC-CEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC-cEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 8888888885544557888888888888888874333 367778888 88888888 46655566788888888888888
Q ss_pred CcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhh---cCCCCcEEEcccccCcc
Q 042573 166 NKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFE---NFLFLQKLNLSFNHFEG 242 (388)
Q Consensus 166 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~l~l~~n~~~~ 242 (388)
|.+++..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+. ....++.++++++.+.+
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 888877788888888888888888887644333344578888888888888766544332 34567778888777765
Q ss_pred c----CC-CCCcCCCCccccccCCCC
Q 042573 243 E----VP-IKGVFSNSSAISLDGNDN 263 (388)
Q Consensus 243 ~----~~-~~~~~~~~~~~~~~~~~~ 263 (388)
. +| ....++++..+++.+|..
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cchhhhHHHHhcccCCCEEECCCCCC
Confidence 2 11 113456778888887753
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.4e-26 Score=201.46 Aligned_cols=206 Identities=23% Similarity=0.253 Sum_probs=139.5
Q ss_pred CCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCC
Q 042573 37 LELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSK 116 (388)
Q Consensus 37 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 116 (388)
.+.++++++.++ .+|..+. ++|++|+|++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 455555555554 3333332 3455555555555544444555555555555555555544444455556666666666
Q ss_pred CcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccC
Q 042573 117 NNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNI 196 (388)
Q Consensus 117 n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 196 (388)
|.+....+..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..
T Consensus 95 n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNL-AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCC-CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 65554444444555555 56666666666555666777788888888888887666666778888888888888888776
Q ss_pred CccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCC
Q 042573 197 PSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPI 246 (388)
Q Consensus 197 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~ 246 (388)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|.|..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 77788889999999999999877777788889999999999999988863
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=5.3e-27 Score=204.89 Aligned_cols=214 Identities=21% Similarity=0.271 Sum_probs=189.7
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||..+ +.+|++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|++++|.+.+..+..|..
T Consensus 22 ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 22 IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred cCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 55544 446999999999999888888999999999999999999777888999999999999999999888889999
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCc-CChhhhccCcccceEEccCccCcCCCCcccccCCCCC-
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGT-IPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLG- 159 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~- 159 (388)
+++|++|++++|.+....+..+..+++|++|++++|.+... +|..+..++.+ +.|++++|.+++..+..+..+.+|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-CEEECCCCCCCcCCHHHhhhhhhccc
Confidence 99999999999999987777899999999999999999863 58899999999 9999999999987777888777777
Q ss_pred ---EEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCcccc
Q 042573 160 ---VISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRI 220 (388)
Q Consensus 160 ---~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 220 (388)
.|++++|.+++..+..+ ...+|+.|++++|.+++..+..+..+++|+.|++++|.++...
T Consensus 178 l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 89999999996666554 4458999999999999777777889999999999999998654
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=228.35 Aligned_cols=255 Identities=25% Similarity=0.279 Sum_probs=165.8
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
+|+.+..+++ |++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..
T Consensus 274 ~~~~~~~l~~-L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~ 345 (570)
T 2z63_A 274 IIDLFNCLTN-VSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VD 345 (570)
T ss_dssp STTTTGGGTT-CSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CB
T ss_pred chhhhcCcCc-ccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--cc
Confidence 4566777776 999999999888 467777777 8888888888887 4544 3566677777777665544333 55
Q ss_pred CCCCCEEeccCCcccccC--CcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCC-cccccCCCC
Q 042573 82 LTSLAILDFAENMLEGSI--PSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLP-SNFGILKNL 158 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~-~~~~~l~~L 158 (388)
+++|++|++++|.+++.. +..+..+++|++|++++|.+.+. +..+..++.+ +.|++++|.+.+..+ ..+..+++|
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQL-EHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTC-CEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCC-CEEEccCCccccccchhhhhcCCCC
Confidence 667777777777665432 44556666677777766666533 3335666666 666666666665443 345666666
Q ss_pred CEEEcccCcccccCChhhccccccceecccCcccc-ccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEccc
Q 042573 159 GVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFR-GNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSF 237 (388)
Q Consensus 159 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~ 237 (388)
+.|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|+.|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 66666666666666666666666666666666665 34566666666666666666666666666666666666666666
Q ss_pred ccCcccCCC-CCcCCCCccccccCCCCCcC
Q 042573 238 NHFEGEVPI-KGVFSNSSAISLDGNDNLCG 266 (388)
Q Consensus 238 n~~~~~~~~-~~~~~~~~~~~~~~~~~~c~ 266 (388)
|++++..+. ...++.+..+++.+|+..|.
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 666654432 23455566666666666553
No 54
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.3e-26 Score=209.37 Aligned_cols=238 Identities=24% Similarity=0.353 Sum_probs=141.1
Q ss_pred hhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCC
Q 042573 6 VGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSL 85 (388)
Q Consensus 6 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 85 (388)
+..+++ |++|++++|.+++. ..|.++++|++|++++|.+.. ++. +..+++|++|++++|...... ..+..+++|
T Consensus 84 ~~~l~~-L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L 157 (347)
T 4fmz_A 84 LSNLVK-LTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGL 157 (347)
T ss_dssp GTTCTT-CCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTC
T ss_pred hhcCCc-CCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccc-cchhhCCCC
Confidence 677776 99999999988863 358889999999999998874 333 778888888888888655333 347777888
Q ss_pred CEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEccc
Q 042573 86 AILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSE 165 (388)
Q Consensus 86 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 165 (388)
++|++++|.+....+ +..+++|+.|++++|.+.+. +. +..++.+ +.+++++|.+++..+ +..+++|+.|++++
T Consensus 158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L-~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSL-HYFTAYVNQITDITP--VANMTRLNSLKIGN 230 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred cEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCcc-ceeecccCCCCCCch--hhcCCcCCEEEccC
Confidence 888888777764322 66777777777777776632 22 4555555 556665555553322 45555555555555
Q ss_pred CcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCC
Q 042573 166 NKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 166 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~ 245 (388)
|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+
T Consensus 231 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 231 NKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred CccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh
Confidence 55543222 44555555555555555432 2344445555555555555433 234444555555555555443322
Q ss_pred C-CCcCCCCccccccCCC
Q 042573 246 I-KGVFSNSSAISLDGND 262 (388)
Q Consensus 246 ~-~~~~~~~~~~~~~~~~ 262 (388)
. ...++++..+++.+|+
T Consensus 305 ~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHHHTCTTCSEEECCSSS
T ss_pred hHhhccccCCEEEccCCc
Confidence 1 1223344444444443
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-27 Score=213.41 Aligned_cols=215 Identities=21% Similarity=0.171 Sum_probs=125.0
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
|++|+|++|.+++..|..|.++++|++|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|++|++++
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~ 108 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCC
Confidence 6666666666666555566666666666666666654332 556666666666666655322 235666666666
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCccc-ccCCCCCEEEcccCccccc
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNF-GILKNLGVISLSENKLSGE 171 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~ 171 (388)
|.+++..+.. +++|+.|++++|++++..+..+..++.+ +.|++++|.+++..+..+ ..+++|++|++++|.+++.
T Consensus 109 n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 109 NNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp SCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 6665443322 4556666666666665445455556666 666666666665444444 3456666666666666543
Q ss_pred CChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcc
Q 042573 172 IPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEG 242 (388)
Q Consensus 172 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~ 242 (388)
.. ...+++|++|++++|.+++. |..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++.|
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 185 KG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred cc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 21 22356666666666666533 333555666666666666666 344455566666666666666663
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=223.48 Aligned_cols=184 Identities=22% Similarity=0.278 Sum_probs=157.7
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||..+ +.++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..+..|..
T Consensus 22 ip~~l---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 22 IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp CCSSS---CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred cCCCc---cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 56543 456999999999999988889999999999999999999888888999999999999999999888889999
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCC-cCChhhhccCcccceEEccCccCcCCCCcccccCCCC--
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSG-TIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNL-- 158 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L-- 158 (388)
+++|++|++++|.++...+..+.++++|++|++++|.+.+ .+|..+..++.+ +.|++++|.+++..+..++.+.+|
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC-CEEeCcCCccceecHHHccchhccch
Confidence 9999999999999997666679999999999999999986 368899999999 999999999998777788888888
Q ss_pred --CEEEcccCcccccCChhhccccccceecccCc
Q 042573 159 --GVISLSENKLSGEIPSSLGSCIRLEQLVMNGN 190 (388)
Q Consensus 159 --~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 190 (388)
+.|++++|.+++..+..+... +|+.|++++|
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred hhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence 889999998876666555443 4555555544
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=3.8e-26 Score=200.38 Aligned_cols=207 Identities=23% Similarity=0.222 Sum_probs=152.5
Q ss_pred ccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCC
Q 042573 31 LTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLI 110 (388)
Q Consensus 31 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 110 (388)
+.+++++++++++++.++ .+|..+. ++++.|+|++|.+.+..+..|..+++|++|++++|.++...+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 456666777777777766 3444332 467777777777766666667777777777777777664322 25667777
Q ss_pred EEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCc
Q 042573 111 LLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGN 190 (388)
Q Consensus 111 ~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 190 (388)
.|++++|.+. .+|..+..++.+ +.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 7777777776 556666677777 77777777777666677888888888888888888766666778888888888888
Q ss_pred cccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCC
Q 042573 191 FFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 191 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~ 245 (388)
+++...+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|++.|.|.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 888666666778889999999999988 556666677889999999999988774
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.8e-27 Score=211.91 Aligned_cols=240 Identities=21% Similarity=0.198 Sum_probs=202.1
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
++.++++.+.+.......+..+++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 6666777777766666667788899999999999997777899999999999999999986554 89999999999999
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccC
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEI 172 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 172 (388)
|.+++.. ..++|+.|++++|.+.+..+. .++.+ +.|++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSC-EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCC-CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9998532 348999999999999865443 35667 99999999999887888999999999999999999877
Q ss_pred Chhhc-cccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCC
Q 042573 173 PSSLG-SCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFS 251 (388)
Q Consensus 173 ~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~ 251 (388)
+..+. .+++|++|++++|.+++.. ....+++|++|++++|++++..+ .+..+++|+.|++++|+++........++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~l~ 237 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQ 237 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred HHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchhhHhhcCC
Confidence 76664 6899999999999998663 23358999999999999996544 58899999999999999996544446677
Q ss_pred CCccccccCCCCCcC
Q 042573 252 NSSAISLDGNDNLCG 266 (388)
Q Consensus 252 ~~~~~~~~~~~~~c~ 266 (388)
.+..+++.+|+..|+
T Consensus 238 ~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 238 NLEHFDLRGNGFHCG 252 (317)
T ss_dssp TCCEEECTTCCCBHH
T ss_pred CCCEEEccCCCccCc
Confidence 889999999998774
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.2e-27 Score=220.18 Aligned_cols=222 Identities=21% Similarity=0.213 Sum_probs=191.9
Q ss_pred CCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEE
Q 042573 33 NLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILL 112 (388)
Q Consensus 33 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 112 (388)
.+++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..| |..+++|++|+|++|.+++..+ .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34489999999999998888899999999999999999986655 8999999999999999985432 3899999
Q ss_pred eCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhc-cccccceecccCcc
Q 042573 113 DLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLG-SCIRLEQLVMNGNF 191 (388)
Q Consensus 113 ~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~ 191 (388)
++++|.+.+..+. .++.+ +.|++++|.+++..+..+..+++|+.|+|++|.+++..|..+. .+++|+.|++++|.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSC-EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCcc---ccCCC-CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999999865543 35677 9999999999988888999999999999999999988887776 78999999999999
Q ss_pred ccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCCCCccccccCCCCCcCCC
Q 042573 192 FRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGNDNLCGGI 268 (388)
Q Consensus 192 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 268 (388)
+++..+ ...+++|+.|+|++|.+++..+ .+..+++|+.|++++|.+++..+....++.+..+++.+|+..|+.+
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 987633 3458999999999999997655 4889999999999999999755555667888999999999998654
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=7.1e-27 Score=224.16 Aligned_cols=236 Identities=25% Similarity=0.293 Sum_probs=162.6
Q ss_pred ChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCccccc-CCcCccC
Q 042573 3 PEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGE-IPSSIGN 81 (388)
Q Consensus 3 p~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~ 81 (388)
|.++..+++ |++|++++|.+++..|..|.++++|++|++++|.+.+..+..|+++++|++|++++|.+.+. .|..+.+
T Consensus 43 ~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 43 HGDLRACAN-LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121 (549)
T ss_dssp SSTTSSCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred hhhhhcCCc-ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence 566777776 88888888888887778888888888888888888866666688888888888888887753 4567778
Q ss_pred CCCCCEEeccCCcccccC-CcCCCCCCCCCEEeCCCCcCCCcCChhhhc------------------------cCcccce
Q 042573 82 LTSLAILDFAENMLEGSI-PSSLGKCQNLILLDLSKNNLSGTIPTEVIG------------------------LPSFSIY 136 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------------------------~~~l~~~ 136 (388)
+++|++|++++|.+.+.+ +..+.++++|+.|++++|.+.+..|..+.. ++.+ ++
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-~~ 200 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV-RY 200 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTB-SE
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccc-cE
Confidence 888888888877733233 346666677777777666665544443322 3333 44
Q ss_pred EEccCccCcCC---------------------------------------------------------------------
Q 042573 137 LNLSQNQLNGP--------------------------------------------------------------------- 147 (388)
Q Consensus 137 L~l~~n~~~~~--------------------------------------------------------------------- 147 (388)
|++++|.+++.
T Consensus 201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 280 (549)
T 2z81_A 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280 (549)
T ss_dssp EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC
T ss_pred EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh
Confidence 55555544331
Q ss_pred --------------------------------------------CCccc-ccCCCCCEEEcccCcccccCCh---hhccc
Q 042573 148 --------------------------------------------LPSNF-GILKNLGVISLSENKLSGEIPS---SLGSC 179 (388)
Q Consensus 148 --------------------------------------------~~~~~-~~l~~L~~L~L~~n~l~~~~~~---~~~~l 179 (388)
.|..+ ..+++|+.|++++|.+++..|. .+..+
T Consensus 281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred cccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 12222 3578888888888888765532 25667
Q ss_pred cccceecccCccccccCC--ccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCc
Q 042573 180 IRLEQLVMNGNFFRGNIP--SSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 180 ~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~ 241 (388)
++|+.|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 788888888888764432 34667778888888888877 45666666777777777777765
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.5e-25 Score=194.85 Aligned_cols=208 Identities=23% Similarity=0.298 Sum_probs=185.3
Q ss_pred hccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCE
Q 042573 8 NLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAI 87 (388)
Q Consensus 8 ~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 87 (388)
.+...+++++++++.++. +|..+. ++|++|++++|.+....+..|.++++|++|++++|.++...+..|..+++|++
T Consensus 13 ~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 13 SCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp EEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred EeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 344458899999999994 565454 68999999999999777778999999999999999998777777899999999
Q ss_pred EeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCc
Q 042573 88 LDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENK 167 (388)
Q Consensus 88 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 167 (388)
|++++|.+....+..|..+++|++|++++|.+....+..+..++.+ ++|++++|.+++..+..|..+++|+.|++++|.
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-CEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 9999999998777888999999999999999997777778899999 999999999998777779999999999999999
Q ss_pred ccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccc
Q 042573 168 LSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGR 219 (388)
Q Consensus 168 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 219 (388)
+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 9977777789999999999999999977777788999999999999998744
No 62
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.7e-25 Score=202.04 Aligned_cols=234 Identities=24% Similarity=0.342 Sum_probs=124.1
Q ss_pred hccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCE
Q 042573 8 NLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAI 87 (388)
Q Consensus 8 ~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 87 (388)
.+++ |++|+++++.+... + .+..+++|++|++++|.+.. ++. +.++++|++|++++|.+... +.+..+++|++
T Consensus 42 ~l~~-L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELES-ITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHTT-CSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hccc-ccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 4443 66666666666532 2 25566666666666666653 222 55666666666666665532 24666666666
Q ss_pred EeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCc
Q 042573 88 LDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENK 167 (388)
Q Consensus 88 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 167 (388)
|++++|.+... +. +..+++|+.|++++|..... ...+..++.+ ++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 115 L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L-~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 115 LYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGL-NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTC-CEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCC-cEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 66666666532 22 55666666666666644322 2235555555 566666665553322 5555666666666665
Q ss_pred ccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC
Q 042573 168 LSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK 247 (388)
Q Consensus 168 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~ 247 (388)
+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.++.. +..
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~ 261 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAV 261 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhH
Confidence 553222 4455555555555555543322 4445555555555555554332 44555555555555555432 222
Q ss_pred CcCCCCccccccCC
Q 042573 248 GVFSNSSAISLDGN 261 (388)
Q Consensus 248 ~~~~~~~~~~~~~~ 261 (388)
..++++..+++.+|
T Consensus 262 ~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 262 KDLTKLKMLNVGSN 275 (347)
T ss_dssp TTCTTCCEEECCSS
T ss_pred hcCCCcCEEEccCC
Confidence 33444444444444
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.3e-26 Score=205.91 Aligned_cols=204 Identities=22% Similarity=0.262 Sum_probs=174.5
Q ss_pred hccccccEEEeecCceeecCcccc--cCCCCCCEEECcCCccccCCCccccCC-----CCCCEEEcccCcccccCCcCcc
Q 042573 8 NLSTRLGKLSVAENQLFGNIPSGL--TNLVNLELLDLGDNQFTGRIPGSIGDL-----QKLQRLWLKGNKFWGEIPSSIG 80 (388)
Q Consensus 8 ~l~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~ 80 (388)
.+++ |++|++++|.+++..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..|.
T Consensus 93 ~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISG-LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSC-CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCC-ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 6776 9999999999998888876 8999999999999999966 7777776 8999999999999988889999
Q ss_pred CCCCCCEEeccCCccccc--CCcC--CCCCCCCCEEeCCCCcCCCc--CC-hhhhccCcccceEEccCccCcCCCC-ccc
Q 042573 81 NLTSLAILDFAENMLEGS--IPSS--LGKCQNLILLDLSKNNLSGT--IP-TEVIGLPSFSIYLNLSQNQLNGPLP-SNF 152 (388)
Q Consensus 81 ~l~~L~~L~l~~n~l~~~--~~~~--~~~l~~L~~L~l~~n~~~~~--~~-~~~~~~~~l~~~L~l~~n~~~~~~~-~~~ 152 (388)
.+++|++|++++|.+.+. .+.. +..+++|++|++++|++++. .+ ..+..++.+ +.|++++|.+++..+ ..+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL-QGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC-SEEECTTSCCCSSCCCSCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC-CEEECCCCcCCcccchhhh
Confidence 999999999999997654 2333 38899999999999999832 22 233567888 999999999998764 456
Q ss_pred ccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccc
Q 042573 153 GILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGR 219 (388)
Q Consensus 153 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 219 (388)
..+++|+.|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++++.
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 77899999999999998 6666665 8999999999999866 65 88999999999999999853
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.3e-25 Score=209.13 Aligned_cols=239 Identities=27% Similarity=0.373 Sum_probs=126.3
Q ss_pred hhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCC
Q 042573 6 VGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSL 85 (388)
Q Consensus 6 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 85 (388)
+..+++ |++|++++|.+++..+ |.++++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +..+++|
T Consensus 64 ~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNN-LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNL 136 (466)
T ss_dssp GGGCTT-CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhhhcC-CCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCC
Confidence 555654 7777777777775443 6777777777777777764333 6666777777777766654322 5566666
Q ss_pred CEEeccCCcccccC-------------------CcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcC
Q 042573 86 AILDFAENMLEGSI-------------------PSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNG 146 (388)
Q Consensus 86 ~~L~l~~n~l~~~~-------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~ 146 (388)
++|++++|.+.... ...+.++++|+.|++++|.+... ..+..++.+ +.|++++|.+.+
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-~~L~l~~n~l~~ 213 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNL-ESLIATNNQISD 213 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCC
T ss_pred CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCC-CEEEecCCcccc
Confidence 66666666554210 01244555666666666665422 234455555 555555555543
Q ss_pred CCC--------------------cccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCC
Q 042573 147 PLP--------------------SNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGI 206 (388)
Q Consensus 147 ~~~--------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 206 (388)
..+ ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|
T Consensus 214 ~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 214 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred cccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 322 223444444444444444443222 4444555555555555443222 4445555
Q ss_pred CEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCCCCccccccCC
Q 042573 207 EKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGN 261 (388)
Q Consensus 207 ~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 261 (388)
+.|++++|++++..+ +..+++|+.|++++|++++..+ ...++++..+++.+|
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC
Confidence 555555555554332 4455555555555555554433 233444455555444
No 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=3e-25 Score=208.25 Aligned_cols=217 Identities=28% Similarity=0.423 Sum_probs=163.4
Q ss_pred hccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCE
Q 042573 8 NLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAI 87 (388)
Q Consensus 8 ~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 87 (388)
.+++ |++|++.++.+.. +| .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 44 ~l~~-l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQ-VTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHT-CCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred Hhcc-ccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 3555 9999999999985 44 48899999999999999985443 8999999999999999985544 999999999
Q ss_pred EeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCC-------------------hhhhccCcccceEEccCccCcCCC
Q 042573 88 LDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIP-------------------TEVIGLPSFSIYLNLSQNQLNGPL 148 (388)
Q Consensus 88 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------~~~~~~~~l~~~L~l~~n~~~~~~ 148 (388)
|++++|.++...+ +..+++|++|++++|.+.+... ..+..++.+ +.|++++|.+++.
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL-ERLDISSNKVSDI- 192 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTC-CEEECCSSCCCCC-
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCC-CEEECcCCcCCCC-
Confidence 9999999986533 8999999999999998874211 125566777 8999999998854
Q ss_pred CcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCC
Q 042573 149 PSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFL 228 (388)
Q Consensus 149 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 228 (388)
..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..++
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred -hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 357889999999999999876544 55667777777777766542 234555666666666666654433 45555
Q ss_pred CCcEEEcccccCcc
Q 042573 229 FLQKLNLSFNHFEG 242 (388)
Q Consensus 229 ~L~~l~l~~n~~~~ 242 (388)
+|+.|++++|.+++
T Consensus 266 ~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 266 KLTELKLGANQISN 279 (466)
T ss_dssp TCSEEECCSSCCCC
T ss_pred CCCEEECCCCccCc
Confidence 55555555555544
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.5e-25 Score=195.00 Aligned_cols=220 Identities=23% Similarity=0.233 Sum_probs=186.7
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
+..+++..+.+.+.. .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+. +.+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCccccccc--ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 555666666666442 3567889999999999887 333 578899999999999988753 4788999999999999
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccC
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEI 172 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 172 (388)
|.+++..+..+..+++|++|++++|++.+..+..+..++.+ ++|++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 99997777778999999999999999987666678888888 89999999999777777889999999999999999777
Q ss_pred ChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCC
Q 042573 173 PSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPI 246 (388)
Q Consensus 173 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~ 246 (388)
+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+. +++|+.+++..|.++|.+|.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 77788999999999999999988888889999999999999988743 55788899999999998875
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.4e-24 Score=202.40 Aligned_cols=213 Identities=21% Similarity=0.172 Sum_probs=159.4
Q ss_pred hhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCC
Q 042573 4 EAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLT 83 (388)
Q Consensus 4 ~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 83 (388)
..+.++++ |++|++++|.+++. | .|..+++|++|++++|.+++. + ++.+++|++|++++|.+++. + +..++
T Consensus 36 ~~~~~l~~-L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 36 ISEEQLAT-LTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEHHHHTT-CCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred cChhHcCC-CCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 45677876 99999999998865 4 588889999999999998854 3 78888999999999988764 2 78888
Q ss_pred CCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEc
Q 042573 84 SLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISL 163 (388)
Q Consensus 84 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 163 (388)
+|++|++++|.+++. + +..+++|++|++++|++++. + +..++.+ +.|++++|...+.. .+..+++|+.|++
T Consensus 107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L-~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQL-TELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTC-CEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcC-CEEECCCCCccccc--ccccCCcCCEEEC
Confidence 999999999988863 3 78888899999988888753 2 6667777 78888877554444 3667777778888
Q ss_pred ccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCccc
Q 042573 164 SENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGE 243 (388)
Q Consensus 164 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~ 243 (388)
++|.+++. + +..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|++++.
T Consensus 178 s~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 178 SFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 77777753 3 56677777777777777644 35666777777777777775 33 56667777777777777654
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2.5e-24 Score=200.65 Aligned_cols=235 Identities=20% Similarity=0.179 Sum_probs=196.1
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
+| ++..+++ |++|++++|.+++. | +..+++|++|++++|.+++. + ++++++|++|++++|.+++. + +..
T Consensus 57 ~~-~l~~l~~-L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~ 125 (457)
T 3bz5_A 57 MT-GIEKLTG-LTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQ 125 (457)
T ss_dssp CT-TGGGCTT-CSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTT
T ss_pred Ch-hhcccCC-CCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCC
Confidence 45 6788886 99999999999975 3 88999999999999999864 3 88999999999999999864 3 889
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEE
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVI 161 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L 161 (388)
+++|++|++++|.+++. .+..+++|+.|++++|...+.+ .+..++.+ +.|++++|.+++. + +..+++|+.|
T Consensus 126 l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L-~~L~ls~n~l~~l-~--l~~l~~L~~L 196 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQL-TTLDCSFNKITEL-D--VSQNKLLNRL 196 (457)
T ss_dssp CTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTC-CEEECCSSCCCCC-C--CTTCTTCCEE
T ss_pred CCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcC-CEEECCCCcccee-c--cccCCCCCEE
Confidence 99999999999999974 3889999999999999655454 47788888 9999999999974 3 7889999999
Q ss_pred EcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCC-------CCcEEE
Q 042573 162 SLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFL-------FLQKLN 234 (388)
Q Consensus 162 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-------~L~~l~ 234 (388)
++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|++++..+..+..+. +|+.++
T Consensus 197 ~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 197 NCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID 270 (457)
T ss_dssp ECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred ECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEE
Confidence 9999999865 37889999999999999996 45 78899999999999999987655554443 455666
Q ss_pred cccccCcccCCCCCcCCCCccccccCCCC
Q 042573 235 LSFNHFEGEVPIKGVFSNSSAISLDGNDN 263 (388)
Q Consensus 235 l~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (388)
+++|++.+.+|. ..++.+..+++.+|..
T Consensus 271 l~~n~~~~~~~~-~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 271 LTHNTQLIYFQA-EGCRKIKELDVTHNTQ 298 (457)
T ss_dssp CTTCTTCCEEEC-TTCTTCCCCCCTTCTT
T ss_pred CCCCccCCcccc-cccccCCEEECCCCcc
Confidence 677776666663 4567888888888763
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1e-25 Score=196.18 Aligned_cols=204 Identities=22% Similarity=0.219 Sum_probs=130.7
Q ss_pred CCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCC
Q 042573 36 NLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLS 115 (388)
Q Consensus 36 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 115 (388)
.+..+++..+.+... ..+..+++|+.|++++|.+.. .+.+..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 344445555544322 234456667777777766542 23466667777777777766642 356666777777777
Q ss_pred CCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCcccccc
Q 042573 116 KNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGN 195 (388)
Q Consensus 116 ~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 195 (388)
+|.+++..+..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNL-KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCccChhHhcCCcCC-CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 777765555556666666 6777777777666555666677777777777777655555566667777777777777655
Q ss_pred CCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCC
Q 042573 196 IPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPI 246 (388)
Q Consensus 196 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~ 246 (388)
.+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 555566667777777777777766666666677777777777777666653
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=8.6e-25 Score=191.75 Aligned_cols=204 Identities=23% Similarity=0.243 Sum_probs=181.4
Q ss_pred hhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCC
Q 042573 6 VGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSL 85 (388)
Q Consensus 6 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 85 (388)
+.++++ +++++++++.++. +|..+. ++++.|++++|.+.+..+..|.++++|++|+|++|.+++..+. ..+++|
T Consensus 6 ~~~l~~-l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVAS-HLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTT-CCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCC-ccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 556776 9999999999985 555443 7899999999999988888999999999999999999865443 789999
Q ss_pred CEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEccc
Q 042573 86 AILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSE 165 (388)
Q Consensus 86 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 165 (388)
++|++++|.+. .+|..+..+++|++|++++|+++...+..+..++.+ +.|++++|.+++..+..|..+++|+.|+|++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 99999999998 678889999999999999999997777889999999 9999999999988888899999999999999
Q ss_pred CcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCcc
Q 042573 166 NKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSG 218 (388)
Q Consensus 166 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 218 (388)
|.++...+..|..+++|+.|++++|.++ .+|..+...+.|+.|++++|.+..
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9999777777888999999999999998 677777788899999999999874
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=4.7e-25 Score=188.30 Aligned_cols=198 Identities=17% Similarity=0.184 Sum_probs=148.1
Q ss_pred CCCCEEECcCCccccCCCccccCCCCCCEEEcccCc-ccccCCcCccCCCCCCEEeccC-CcccccCCcCCCCCCCCCEE
Q 042573 35 VNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNK-FWGEIPSSIGNLTSLAILDFAE-NMLEGSIPSSLGKCQNLILL 112 (388)
Q Consensus 35 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 112 (388)
++|++|++++|.+++..+..|.++++|++|++++|. +.+..+..|..+++|++|++++ |.++...+..|.++++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 367777777777776666677777777777777775 6655556777777777777777 77776666677777777777
Q ss_pred eCCCCcCCCcCChhhhccCcccc---eEEccCc-cCcCCCCcccccCCCCC-EEEcccCcccccCChhhccccccceecc
Q 042573 113 DLSKNNLSGTIPTEVIGLPSFSI---YLNLSQN-QLNGPLPSNFGILKNLG-VISLSENKLSGEIPSSLGSCIRLEQLVM 187 (388)
Q Consensus 113 ~l~~n~~~~~~~~~~~~~~~l~~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l 187 (388)
++++|.+++ +|. +..++.+ + .|++++| .+++..+..|.++++|+ .|++++|.++...+..+.. ++|+.|++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L-~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYST-DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBC-CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCcc-ccc-ccccccc-ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 777777764 554 6666666 5 8888888 77766666788888898 9999999888444444544 78999999
Q ss_pred cCcc-ccccCCccCcCC-CCCCEEECCCCcCccccchhhhcCCCCcEEEccccc
Q 042573 188 NGNF-FRGNIPSSFSSL-RGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNH 239 (388)
Q Consensus 188 ~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~ 239 (388)
++|+ +++..+..+..+ ++|+.|++++|+++...+. .+++|+.|+++++.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 9995 887777788888 8999999999999865444 56788888888763
No 72
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1.8e-26 Score=211.36 Aligned_cols=241 Identities=19% Similarity=0.223 Sum_probs=179.9
Q ss_pred CChhhhhccccccEEEeecCceeecCc----ccccCCCCCCEEECcCCcc---ccCCCccc-------cCCCCCCEEEcc
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIP----SGLTNLVNLELLDLGDNQF---TGRIPGSI-------GDLQKLQRLWLK 67 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~n~~---~~~~~~~~-------~~l~~L~~L~L~ 67 (388)
++..+..+++ |++|+|++|.++...+ ..|..+++|++|+|++|.+ .+.+|..+ ..+++|++|+|+
T Consensus 24 l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSC-CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCC-ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 5667777876 9999999998887633 3467889999999988644 33444443 678899999999
Q ss_pred cCcccc----cCCcCccCCCCCCEEeccCCcccccCCc----CCCCC---------CCCCEEeCCCCcCCC-cCC---hh
Q 042573 68 GNKFWG----EIPSSIGNLTSLAILDFAENMLEGSIPS----SLGKC---------QNLILLDLSKNNLSG-TIP---TE 126 (388)
Q Consensus 68 ~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l---------~~L~~L~l~~n~~~~-~~~---~~ 126 (388)
+|.+.. .++..+..+++|++|+|++|.++...+. .+..+ ++|++|++++|+++. ..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 998876 3566778889999999999988643222 23333 789999999988862 333 35
Q ss_pred hhccCcccceEEccCccCcC-----CCCcccccCCCCCEEEcccCccc----ccCChhhccccccceecccCcccccc--
Q 042573 127 VIGLPSFSIYLNLSQNQLNG-----PLPSNFGILKNLGVISLSENKLS----GEIPSSLGSCIRLEQLVMNGNFFRGN-- 195 (388)
Q Consensus 127 ~~~~~~l~~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~-- 195 (388)
+..++.+ +.|++++|.++. ..+..+..+++|+.|+|++|.++ ..++..+..+++|+.|++++|.+++.
T Consensus 183 l~~~~~L-~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 183 FQSHRLL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHCTTC-CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHhCCCc-CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 5677777 889999988873 23336778889999999999885 45667778888899999999988765
Q ss_pred --CCccCc--CCCCCCEEECCCCcCcc----ccchhh-hcCCCCcEEEcccccCcccC
Q 042573 196 --IPSSFS--SLRGIEKLDLSRNNLSG----RIPKYF-ENFLFLQKLNLSFNHFEGEV 244 (388)
Q Consensus 196 --~~~~~~--~l~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~l~l~~n~~~~~~ 244 (388)
++..+. .+++|++|+|++|.+++ .+|..+ ..+++|+.|++++|++++..
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 445553 37889999999999887 366666 55788999999998887654
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=1.6e-24 Score=185.04 Aligned_cols=196 Identities=18% Similarity=0.183 Sum_probs=97.6
Q ss_pred cccEEEeecCceeecCcccccCCCCCCEEECcCCc-cccCCCccccCCCCCCEEEccc-CcccccCCcCccCCCCCCEEe
Q 042573 12 RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQ-FTGRIPGSIGDLQKLQRLWLKG-NKFWGEIPSSIGNLTSLAILD 89 (388)
Q Consensus 12 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~ 89 (388)
+|++|++++|++++..+..|.++++|++|++++|. ++.+.+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 35555555555555444455555555555555554 4444444455555555555555 555544444555555555555
Q ss_pred ccCCcccccCCcCCCCCCCCC---EEeCCCC-cCCCcCChhhhccCcccc-eEEccCccCcCCCCcccccCCCCCEEEcc
Q 042573 90 FAENMLEGSIPSSLGKCQNLI---LLDLSKN-NLSGTIPTEVIGLPSFSI-YLNLSQNQLNGPLPSNFGILKNLGVISLS 164 (388)
Q Consensus 90 l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~l~~-~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 164 (388)
+++|.+++ +|. +..+++|+ .|++++| .+....+..+..++.+ + .|++++|.++...+..|.. ++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-EEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-eeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 55555553 333 44555555 5555555 5543333344455555 4 5555555555332333333 455555555
Q ss_pred cCc-ccccCChhhccc-cccceecccCccccccCCccCcCCCCCCEEECCCC
Q 042573 165 ENK-LSGEIPSSLGSC-IRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN 214 (388)
Q Consensus 165 ~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 214 (388)
+|. ++...+..|..+ ++|+.|++++|.+++. |.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 553 554444445555 5555555555555422 221 3345555555443
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=1e-24 Score=193.53 Aligned_cols=224 Identities=21% Similarity=0.207 Sum_probs=160.8
Q ss_pred ccEEEeecCceeecCcc---cccCCCCCCEEECcCCccccCCCccc--cCCCCCCEEEcccCcccccCC----cCccCCC
Q 042573 13 LGKLSVAENQLFGNIPS---GLTNLVNLELLDLGDNQFTGRIPGSI--GDLQKLQRLWLKGNKFWGEIP----SSIGNLT 83 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~~~~l~ 83 (388)
++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|+|++|.+.+..+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 66777777666532111 12234668888888888887777777 788888888888888876444 2345688
Q ss_pred CCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCc--C--ChhhhccCcccceEEccCccCcCCCC--c-ccccCC
Q 042573 84 SLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGT--I--PTEVIGLPSFSIYLNLSQNQLNGPLP--S-NFGILK 156 (388)
Q Consensus 84 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~--~~~~~~~~~l~~~L~l~~n~~~~~~~--~-~~~~l~ 156 (388)
+|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..++.+ ++|++++|.++.... . .+..++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI-QNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC-CSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC-CEEECCCCCCCchHHHHHHHHhcCC
Confidence 888888888888877778888888888888888876532 1 1223566777 788888888863211 1 246778
Q ss_pred CCCEEEcccCcccccCChhhccc---cccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEE
Q 042573 157 NLGVISLSENKLSGEIPSSLGSC---IRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKL 233 (388)
Q Consensus 157 ~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l 233 (388)
+|++|+|++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 88888888888887666666555 68888888888887 5566554 7888888888888864 22 5677888888
Q ss_pred EcccccCcc
Q 042573 234 NLSFNHFEG 242 (388)
Q Consensus 234 ~l~~n~~~~ 242 (388)
++++|+++.
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 888888763
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.9e-23 Score=178.39 Aligned_cols=180 Identities=21% Similarity=0.239 Sum_probs=111.7
Q ss_pred CCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCC
Q 042573 36 NLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLS 115 (388)
Q Consensus 36 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 115 (388)
..++++++++.++ .+|..+. ++|+.|+|++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567777777776 4555443 567777777777776666677777777777777777776666667777777777777
Q ss_pred CCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCcccccc
Q 042573 116 KNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGN 195 (388)
Q Consensus 116 ~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 195 (388)
+|+++...+..+.. +++|++|+|++|.+++..+..|..+++|+.|++++|.+++.
T Consensus 92 ~n~l~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 92 NNQLASLPLGVFDH-------------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCCCCCTTTTTT-------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccChhHhcc-------------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 77666443334444 44555555555555444444444555555555555555544
Q ss_pred CCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCccc
Q 042573 196 IPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGE 243 (388)
Q Consensus 196 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~ 243 (388)
.+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.|.
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 444555556666666666666655555566666666666666666655
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=6.2e-24 Score=188.50 Aligned_cols=202 Identities=19% Similarity=0.156 Sum_probs=170.5
Q ss_pred ccccccEEEeecCceeecCcccc--cCCCCCCEEECcCCccccCCC----ccccCCCCCCEEEcccCcccccCCcCccCC
Q 042573 9 LSTRLGKLSVAENQLFGNIPSGL--TNLVNLELLDLGDNQFTGRIP----GSIGDLQKLQRLWLKGNKFWGEIPSSIGNL 82 (388)
Q Consensus 9 l~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 82 (388)
+++ |++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|+|++|.+.+..+..|..+
T Consensus 90 ~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSR-LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSC-CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCc-eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 454 9999999999999988888 899999999999999986554 344578999999999999998888899999
Q ss_pred CCCCEEeccCCccccc----CCcCCCCCCCCCEEeCCCCcCCCcCCh----hhhccCcccceEEccCccCcCCCCccccc
Q 042573 83 TSLAILDFAENMLEGS----IPSSLGKCQNLILLDLSKNNLSGTIPT----EVIGLPSFSIYLNLSQNQLNGPLPSNFGI 154 (388)
Q Consensus 83 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~l~~~L~l~~n~~~~~~~~~~~~ 154 (388)
++|++|++++|++.+. .+..+..+++|++|++++|+++ ..+. .+..++.+ ++|++++|.+++..|..+..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L-~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQP-HSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCC-SSEECTTSCCCCCCCSCCSS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCC-CEEECCCCCCCccchhhHHh
Confidence 9999999999997642 2334578999999999999997 3333 24677888 99999999999887777766
Q ss_pred C---CCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCcc
Q 042573 155 L---KNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSG 218 (388)
Q Consensus 155 l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 218 (388)
+ ++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus 247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 6 69999999999999 5666553 7999999999999854 33 5778999999999999974
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=1.3e-23 Score=185.95 Aligned_cols=209 Identities=24% Similarity=0.329 Sum_probs=163.0
Q ss_pred EEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCc
Q 042573 15 KLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENM 94 (388)
Q Consensus 15 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 94 (388)
.+.+..+.+++.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP 96 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc
Confidence 3345555555432 24567788888888888873 44 57788888888888888874433 8888888888888888
Q ss_pred ccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCCh
Q 042573 95 LEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPS 174 (388)
Q Consensus 95 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 174 (388)
+... ..+..+++|+.|++++|.+.+ ++ .+..++.+ +.|++++|.+++..+ +..+++|+.|++++|.+++..+
T Consensus 97 l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 97 LKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNL-QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp CSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCC-CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-
Confidence 8753 367888888888888888874 33 37788888 888998888885543 7888999999999999885433
Q ss_pred hhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcc
Q 042573 175 SLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEG 242 (388)
Q Consensus 175 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~ 242 (388)
+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred -hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7888999999999999875543 6788999999999999986653 7889999999999999976
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=9e-23 Score=175.36 Aligned_cols=180 Identities=21% Similarity=0.230 Sum_probs=137.4
Q ss_pred cccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 12 RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 12 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
..++++++++.++ .+|..+. ++|+.|++++|.+.+..+..|.++++|++|+|++|.+.+..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4789999999998 4555554 689999999999998888889999999999999999998888889999999999999
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCccccc
Q 042573 92 ENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGE 171 (388)
Q Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 171 (388)
+|.++...+..|..+++|++|++++|++++..+..+..+ ++|+.|+|++|.+++.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-------------------------~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-------------------------TKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-------------------------TTCCEEECCSSCCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC-------------------------CcccEEECcCCcCCcc
Confidence 999998878889999999999999998874433333444 4455555555555544
Q ss_pred CChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccc
Q 042573 172 IPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGR 219 (388)
Q Consensus 172 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 219 (388)
.+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 444455555555555555555545555566667777777777777644
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=3.3e-23 Score=183.42 Aligned_cols=196 Identities=25% Similarity=0.350 Sum_probs=169.0
Q ss_pred hhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCC
Q 042573 6 VGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSL 85 (388)
Q Consensus 6 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 85 (388)
...+++ |++|++++|.++. ++ .+..+++|++|++++|.+... +. +.++++|++|++++|.+.+. +.+..+++|
T Consensus 37 ~~~l~~-L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDG-ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHHT-CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHHcCC-cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 345776 9999999999985 44 589999999999999999854 44 89999999999999998753 468999999
Q ss_pred CEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEccc
Q 042573 86 AILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSE 165 (388)
Q Consensus 86 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 165 (388)
++|++++|.++.. + .+..+++|+.|++++|.+.+.. . +..++.+ +.|++++|.+++..+ +..+++|+.|++++
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS-P-LAGLTNL-QYLSIGNAQVSDLTP--LANLSKLTTLKADD 182 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG-G-GGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc-c-ccCCCCc-cEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence 9999999999864 3 3899999999999999998543 3 8888998 999999999986543 88999999999999
Q ss_pred CcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccc
Q 042573 166 NKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGR 219 (388)
Q Consensus 166 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 219 (388)
|.+++..+ +..+++|+.|++++|.+++.. .+..+++|+.|++++|++++.
T Consensus 183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 183 NKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred CccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 99985543 788999999999999998655 378899999999999999854
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=7.5e-25 Score=196.90 Aligned_cols=223 Identities=17% Similarity=0.163 Sum_probs=177.4
Q ss_pred ccccEEEeecCceeecCcccccCC--CCCCEEECcCCccccCCCccccCCCCCCEEEcccCccccc-CCcCccCCCCCCE
Q 042573 11 TRLGKLSVAENQLFGNIPSGLTNL--VNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGE-IPSSIGNLTSLAI 87 (388)
Q Consensus 11 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~ 87 (388)
..+++++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34888999988876 3456666 8899999999998866555 55789999999999988755 6777888999999
Q ss_pred EeccCCcccccCCcCCCCCCCCCEEeCCCC-cCCCc-CChhhhccCcccceEEccCc-cCcCC-CCcccccCC-CCCEEE
Q 042573 88 LDFAENMLEGSIPSSLGKCQNLILLDLSKN-NLSGT-IPTEVIGLPSFSIYLNLSQN-QLNGP-LPSNFGILK-NLGVIS 162 (388)
Q Consensus 88 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~l~~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~ 162 (388)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+..++.+ +.|++++| .+++. .+..+..++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L-~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL-DELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC-CEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC-CEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 999999888777778888999999999998 56642 55567788888 89999999 88754 456678888 999999
Q ss_pred cccC--ccc-ccCChhhccccccceecccCcc-ccccCCccCcCCCCCCEEECCCCc-CccccchhhhcCCCCcEEEccc
Q 042573 163 LSEN--KLS-GEIPSSLGSCIRLEQLVMNGNF-FRGNIPSSFSSLRGIEKLDLSRNN-LSGRIPKYFENFLFLQKLNLSF 237 (388)
Q Consensus 163 L~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~l~l~~ 237 (388)
+++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 9999 444 3456667788999999999998 666677788888999999999985 3333333677889999999998
Q ss_pred c
Q 042573 238 N 238 (388)
Q Consensus 238 n 238 (388)
|
T Consensus 282 ~ 282 (336)
T 2ast_B 282 I 282 (336)
T ss_dssp S
T ss_pred c
Confidence 8
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1e-24 Score=197.75 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=45.0
Q ss_pred EeecCceeecCcccccCCCCCCEEECcCCccccCCC----ccccCCC-CCCEEEcccCcccccCCcCccCC-----CCCC
Q 042573 17 SVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIP----GSIGDLQ-KLQRLWLKGNKFWGEIPSSIGNL-----TSLA 86 (388)
Q Consensus 17 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~~L~ 86 (388)
++++|.+++.+|..+...++|++|++++|.+....+ ..+.+++ +|++|+|++|.+.+..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 444444444444433333345555555554443333 3344444 45555555554443333333332 4455
Q ss_pred EEeccCCcccccCCcC----CCCC-CCCCEEeCCCCcCC
Q 042573 87 ILDFAENMLEGSIPSS----LGKC-QNLILLDLSKNNLS 120 (388)
Q Consensus 87 ~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~~~ 120 (388)
+|++++|.++...+.. +..+ ++|+.|++++|.++
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 5555555444332221 2222 44555555555444
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=4.9e-22 Score=190.76 Aligned_cols=212 Identities=25% Similarity=0.334 Sum_probs=116.0
Q ss_pred CChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
||..++ ++|++|++++|.++. +|. .+++|++|+|++|.++ .+|. .+++|++|+|++|.+++ +|. .
T Consensus 55 lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~ 119 (622)
T 3g06_A 55 LPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---L 119 (622)
T ss_dssp CCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---C
T ss_pred cChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---C
Confidence 455444 347888888887774 333 4677777777777776 3443 55677777777776653 232 3
Q ss_pred CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhh-----------------ccCcccceEEccCccC
Q 042573 82 LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVI-----------------GLPSFSIYLNLSQNQL 144 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----------------~~~~l~~~L~l~~n~~ 144 (388)
+++|+.|++++|.++. +|.. +++|++|++++|.+++ +|..+. .++.+ +.|++++|.+
T Consensus 120 l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L-~~L~Ls~N~l 193 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGL-QELSVSDNQL 193 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTC-CEEECCSSCC
T ss_pred CCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCC-cEEECCCCCC
Confidence 4455555555555542 2221 2445555555554442 121111 11333 4555555554
Q ss_pred cCCCCccc-----------------ccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCC
Q 042573 145 NGPLPSNF-----------------GILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIE 207 (388)
Q Consensus 145 ~~~~~~~~-----------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 207 (388)
++. |..+ ..+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+
T Consensus 194 ~~l-~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~ 264 (622)
T 3g06_A 194 ASL-PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLL 264 (622)
T ss_dssp SCC-CCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred CCC-CCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCc
Confidence 431 1111 012455666666665553 23 23456666666666665 3333 346677
Q ss_pred EEECCCCcCccccchhhhcCCCCcEEEcccccCcccC
Q 042573 208 KLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEV 244 (388)
Q Consensus 208 ~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~ 244 (388)
.|++++|+++ .+|..+..+++|+.|++++|++++..
T Consensus 265 ~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 7777777776 44566777777777777777776543
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=1.9e-22 Score=187.83 Aligned_cols=234 Identities=23% Similarity=0.322 Sum_probs=132.6
Q ss_pred CCChhhhhccccccEEEeecCceeecCcccccCCCCC-------------CEEECcCCccccCCCccccCCCCCCEEEcc
Q 042573 1 MLPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNL-------------ELLDLGDNQFTGRIPGSIGDLQKLQRLWLK 67 (388)
Q Consensus 1 ~ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 67 (388)
+||++++++++ |++|++++|.+++..|..+.++.+| ++|++++|.+++ +|.. .++|++|+++
T Consensus 25 ~iP~~i~~L~~-L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~ 99 (454)
T 1jl5_A 25 EMPVEAENVKS-KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVAS 99 (454)
T ss_dssp ---------CC-HHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECC
T ss_pred hCChhHhcccc-hhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEcc
Confidence 36777777775 7777777777777777766665543 666666665553 2221 2345555555
Q ss_pred cCcccccCCcCc----------------cCC-CCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhcc
Q 042573 68 GNKFWGEIPSSI----------------GNL-TSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGL 130 (388)
Q Consensus 68 ~n~~~~~~~~~~----------------~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 130 (388)
+|.+++ +|..+ ..+ ++|++|++++|.+++ +| .+.++++|++|++++|++++ +|..+
T Consensus 100 ~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--- 172 (454)
T 1jl5_A 100 CNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--- 172 (454)
T ss_dssp SSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---
T ss_pred CCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---
Confidence 554443 22211 011 466666666666664 44 46667777777777776663 34322
Q ss_pred CcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEE
Q 042573 131 PSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLD 210 (388)
Q Consensus 131 ~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 210 (388)
..+ ++|++++|.+++ .| .+.++++|+.|++++|.+++ +|.. .++|+.|++++|.+. .+| .+..+++|++|+
T Consensus 173 ~~L-~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~ 243 (454)
T 1jl5_A 173 PSL-EFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIY 243 (454)
T ss_dssp TTC-CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEE
T ss_pred ccc-cEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEE
Confidence 244 677777777665 33 46677777777777777764 3321 246777777777776 455 366777777788
Q ss_pred CCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCCCCccccccCCC
Q 042573 211 LSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGND 262 (388)
Q Consensus 211 l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
+++|++++. |.. +++|+.|++++|.+++ +|. ..+.+..+++.+|.
T Consensus 244 l~~N~l~~l-~~~---~~~L~~L~l~~N~l~~-l~~--~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 244 ADNNLLKTL-PDL---PPSLEALNVRDNYLTD-LPE--LPQSLTFLDVSENI 288 (454)
T ss_dssp CCSSCCSSC-CSC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC
T ss_pred CCCCcCCcc-ccc---ccccCEEECCCCcccc-cCc--ccCcCCEEECcCCc
Confidence 777777743 322 3567777777777765 222 23455555655553
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.3e-23 Score=188.78 Aligned_cols=236 Identities=17% Similarity=0.208 Sum_probs=187.3
Q ss_pred hhhhc--cccccEEEeecCceeecCcccccCCCCCCEEECcCCccccC-CCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 5 AVGNL--STRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGR-IPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 5 ~~~~l--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
.+..+ +. ++.|++++|.+.+..+. +..+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+..
T Consensus 63 ~~~~~~~~~-l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 63 VTGRLLSQG-VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp HHHHHHHTT-CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred HHHhhhhcc-ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 34444 54 99999999999987665 55799999999999998754 6777889999999999999988777888889
Q ss_pred CCCCCEEeccCC-ccccc-CCcCCCCCCCCCEEeCCCC-cCCCc-CChhhhccC-cccceEEccCc--cCc-CCCCcccc
Q 042573 82 LTSLAILDFAEN-MLEGS-IPSSLGKCQNLILLDLSKN-NLSGT-IPTEVIGLP-SFSIYLNLSQN--QLN-GPLPSNFG 153 (388)
Q Consensus 82 l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~-~l~~~L~l~~n--~~~-~~~~~~~~ 153 (388)
+++|++|++++| .+++. ++..+..+++|+.|++++| .+++. ++..+..++ .+ +.|++++| .++ +..+..+.
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEECCSCGGGSCHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEEeCCCcccCCHHHHHHHHh
Confidence 999999999999 57642 5666788999999999999 88754 466678888 88 99999999 455 34566778
Q ss_pred cCCCCCEEEcccCc-ccccCChhhccccccceecccCcc-ccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCc
Q 042573 154 ILKNLGVISLSENK-LSGEIPSSLGSCIRLEQLVMNGNF-FRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQ 231 (388)
Q Consensus 154 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 231 (388)
.+++|+.|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| ++...-..+. .++.
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~ 296 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALP 296 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHST
T ss_pred hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCc
Confidence 89999999999999 776777788899999999999995 33332335778999999999999 5533222232 2356
Q ss_pred EEEcccccCcccCCC
Q 042573 232 KLNLSFNHFEGEVPI 246 (388)
Q Consensus 232 ~l~l~~n~~~~~~~~ 246 (388)
.|++++|.+++..|.
T Consensus 297 ~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 297 HLQINCSHFTTIARP 311 (336)
T ss_dssp TSEESCCCSCCTTCS
T ss_pred ceEEecccCccccCC
Confidence 666899999987664
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=4e-24 Score=193.93 Aligned_cols=237 Identities=16% Similarity=0.182 Sum_probs=181.2
Q ss_pred hhhccccccEEEeecCceeecCc----ccccCCC-CCCEEECcCCccccCCCccccCC-----CCCCEEEcccCcccccC
Q 042573 6 VGNLSTRLGKLSVAENQLFGNIP----SGLTNLV-NLELLDLGDNQFTGRIPGSIGDL-----QKLQRLWLKGNKFWGEI 75 (388)
Q Consensus 6 ~~~l~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~ 75 (388)
+...+++|++|+|++|.+++..+ ..|.+++ +|++|+|++|.+....+..+..+ ++|++|+|++|.+.+..
T Consensus 17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 34455569999999999998776 7788999 99999999999987777767664 99999999999998666
Q ss_pred CcC----ccCC-CCCCEEeccCCcccccCCcC----CCC-CCCCCEEeCCCCcCCCcCCh----hhhccC-cccceEEcc
Q 042573 76 PSS----IGNL-TSLAILDFAENMLEGSIPSS----LGK-CQNLILLDLSKNNLSGTIPT----EVIGLP-SFSIYLNLS 140 (388)
Q Consensus 76 ~~~----~~~l-~~L~~L~l~~n~l~~~~~~~----~~~-l~~L~~L~l~~n~~~~~~~~----~~~~~~-~l~~~L~l~ 140 (388)
+.. +..+ ++|++|++++|.++...+.. +.. .++|++|++++|.+++.... .+...+ .+ +.|+++
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L-~~L~Ls 175 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV-NSLNLR 175 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC-CEEECT
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc-cEeeec
Confidence 654 4445 89999999999998655433 334 36999999999999854433 334555 66 899999
Q ss_pred CccCcCCCCcccc----cC-CCCCEEEcccCccccc----CChhhcc-ccccceecccCccccccCC----ccCcCCCCC
Q 042573 141 QNQLNGPLPSNFG----IL-KNLGVISLSENKLSGE----IPSSLGS-CIRLEQLVMNGNFFRGNIP----SSFSSLRGI 206 (388)
Q Consensus 141 ~n~~~~~~~~~~~----~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~~----~~~~~l~~L 206 (388)
+|.+++..+..+. .. ++|+.|+|++|.+++. ++..+.. .++|++|++++|.+++..+ ..+..+++|
T Consensus 176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L 255 (362)
T 3goz_A 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTC
T ss_pred CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCc
Confidence 9999876654444 34 5999999999999853 3344444 3589999999999876543 345677889
Q ss_pred CEEECCCCcCccccc-------hhhhcCCCCcEEEcccccCccc
Q 042573 207 EKLDLSRNNLSGRIP-------KYFENFLFLQKLNLSFNHFEGE 243 (388)
Q Consensus 207 ~~L~l~~n~l~~~~~-------~~l~~l~~L~~l~l~~n~~~~~ 243 (388)
+.|++++|.+....+ ..+..+++|+.+++++|++...
T Consensus 256 ~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 999999998554432 3455677788999999998765
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=4.9e-22 Score=179.26 Aligned_cols=237 Identities=18% Similarity=0.115 Sum_probs=126.4
Q ss_pred cEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCC-cCccCCCCCCE-Eecc
Q 042573 14 GKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIP-SSIGNLTSLAI-LDFA 91 (388)
Q Consensus 14 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~-L~l~ 91 (388)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.++.|.++++|++|+|++|.+.+.++ .+|.++++|++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45566666666 344433 2456666666666664444556666666666666666544333 35566666554 3444
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccC-ccCcCCCCcccccCC-CCCEEEcccCccc
Q 042573 92 ENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQ-NQLNGPLPSNFGILK-NLGVISLSENKLS 169 (388)
Q Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~-n~~~~~~~~~~~~l~-~L~~L~L~~n~l~ 169 (388)
.|+++...|..|..+++|++|++++|++....+..+.....+ ..+++.+ +.+....+..|..+. .++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l-~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK-VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC-EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchh-hhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 566665555666666666666666666654444444444444 4555543 344433344444443 4566666666666
Q ss_pred ccCChhhccccccceecccC-ccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCC
Q 042573 170 GEIPSSLGSCIRLEQLVMNG-NFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKG 248 (388)
Q Consensus 170 ~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~ 248 (388)
...+. .....+|++|++.+ |.++...+..|..+++|+.|++++|+++...+.. +.+|+.|.+.++.--..+|...
T Consensus 168 ~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 168 EIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp EECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTT
T ss_pred CCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCch
Confidence 33333 22345566666653 4444333445566666666666666666444333 2345555554443333444444
Q ss_pred cCCCCccccc
Q 042573 249 VFSNSSAISL 258 (388)
Q Consensus 249 ~~~~~~~~~~ 258 (388)
.++++..+.+
T Consensus 244 ~l~~L~~l~l 253 (350)
T 4ay9_X 244 KLVALMEASL 253 (350)
T ss_dssp TCCSCCEEEC
T ss_pred hCcChhhCcC
Confidence 4555554444
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=3.5e-22 Score=186.06 Aligned_cols=232 Identities=21% Similarity=0.272 Sum_probs=121.4
Q ss_pred ChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCC-------------CEEEcccC
Q 042573 3 PEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKL-------------QRLWLKGN 69 (388)
Q Consensus 3 p~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-------------~~L~L~~n 69 (388)
|+.+. .. +|++|++++|.+ +.+|..|.++++|++|++++|.+.+.+|..++++.+| ++|++++|
T Consensus 5 p~~~~-~~-~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 5 PRNVS-NT-FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccccc-cc-cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 34443 34 499999999999 6889999999999999999999999999999988865 99999999
Q ss_pred cccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCC-------------------cCChhhhcc
Q 042573 70 KFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSG-------------------TIPTEVIGL 130 (388)
Q Consensus 70 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-------------------~~~~~~~~~ 130 (388)
.+++ +|.. .++|++|++++|.+++ +|..+ ++|+.|++++|.+.+ .+| .+..+
T Consensus 82 ~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~~---~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l 152 (454)
T 1jl5_A 82 GLSS-LPEL---PPHLESLVASCNSLTE-LPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNS 152 (454)
T ss_dssp CCSC-CCSC---CTTCSEEECCSSCCSS-CCCCC---TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTC
T ss_pred cccc-CCCC---cCCCCEEEccCCcCCc-ccccc---CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCC
Confidence 9874 3432 3678888888888775 44332 445555555555442 133 24444
Q ss_pred CcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEE
Q 042573 131 PSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLD 210 (388)
Q Consensus 131 ~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 210 (388)
+.+ ++|++++|.+++ .|.. ..+|++|++++|.+++ +| .+..+++|+.|++++|.+++ +|.. .++|++|+
T Consensus 153 ~~L-~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 153 SFL-KIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp TTC-CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred CCC-CEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 444 444444444442 2211 1244455555554443 23 34555555555555555543 2221 13566666
Q ss_pred CCCCcCccccchhhhcCCCCcEEEcccccCcccCCCCCcCCCCccccccCCC
Q 042573 211 LSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGND 262 (388)
Q Consensus 211 l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 262 (388)
+++|.++ .+| .+..+++|+.|++++|.+++ +|. ....+..+++..|.
T Consensus 222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNY 268 (454)
T ss_dssp CCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSC
T ss_pred CcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCc
Confidence 6666665 334 36667777777777777765 221 23556666665554
No 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.6e-21 Score=161.35 Aligned_cols=182 Identities=25% Similarity=0.263 Sum_probs=137.8
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
-+.++.+++.++. +|..+ .++|++|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 9 ~~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 4677787777774 34333 46888999999888866666778888899999988888866666778888888888888
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccC
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEI 172 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 172 (388)
|.++...+..+..+++|++|++++|.+.+..+..+..++.+ +.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL-KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC-CEEECCCCccceeCHHHhccCCCccEEEecCCCeec--
Confidence 88886666667888888888888888886555556777777 788888888876666667777888888888886653
Q ss_pred ChhhccccccceecccCccccccCCccCcCCCC
Q 042573 173 PSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRG 205 (388)
Q Consensus 173 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 205 (388)
.++.|+.|+++.|.+++.+|..++.++.
T Consensus 163 -----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 -----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3456777777777777777776665543
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.6e-24 Score=197.03 Aligned_cols=236 Identities=19% Similarity=0.253 Sum_probs=186.5
Q ss_pred cCcccccCCCCCCEEECcCCccccC----CCccccCCCCCCEEEcccCc---ccccCCcCc-------cCCCCCCEEecc
Q 042573 26 NIPSGLTNLVNLELLDLGDNQFTGR----IPGSIGDLQKLQRLWLKGNK---FWGEIPSSI-------GNLTSLAILDFA 91 (388)
Q Consensus 26 ~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~---~~~~~~~~~-------~~l~~L~~L~l~ 91 (388)
.++..+..+++|++|+|++|.+... ++..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3566788899999999999998754 33447789999999999964 444455444 789999999999
Q ss_pred CCcccc----cCCcCCCCCCCCCEEeCCCCcCCCcCChhhh----cc---------CcccceEEccCccCcC-CCC---c
Q 042573 92 ENMLEG----SIPSSLGKCQNLILLDLSKNNLSGTIPTEVI----GL---------PSFSIYLNLSQNQLNG-PLP---S 150 (388)
Q Consensus 92 ~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~~---------~~l~~~L~l~~n~~~~-~~~---~ 150 (388)
+|.++. .++..+..+++|++|++++|.++...+..+. .+ +.+ ++|++++|.++. ..+ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL-RSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC-CEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC-cEEECCCCCCCcHHHHHHHH
Confidence 999986 3667788999999999999998644333333 33 788 999999999973 333 4
Q ss_pred ccccCCCCCEEEcccCcccc-----cCChhhccccccceecccCcccc----ccCCccCcCCCCCCEEECCCCcCccc--
Q 042573 151 NFGILKNLGVISLSENKLSG-----EIPSSLGSCIRLEQLVMNGNFFR----GNIPSSFSSLRGIEKLDLSRNNLSGR-- 219 (388)
Q Consensus 151 ~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~-- 219 (388)
.+..+++|+.|++++|.++. ..+..+..+++|+.|++++|.++ ..+|..+..+++|++|+|++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 56788999999999999973 23436788999999999999996 45777888899999999999999876
Q ss_pred --cchhhhc--CCCCcEEEcccccCcc----cCCCC--CcCCCCccccccCCC
Q 042573 220 --IPKYFEN--FLFLQKLNLSFNHFEG----EVPIK--GVFSNSSAISLDGND 262 (388)
Q Consensus 220 --~~~~l~~--l~~L~~l~l~~n~~~~----~~~~~--~~~~~~~~~~~~~~~ 262 (388)
++..+.. +++|+.|++++|.++. .++.. ..++.+..+++.+|+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4556644 8999999999999987 24422 235777888887775
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=2.1e-21 Score=175.15 Aligned_cols=231 Identities=18% Similarity=0.186 Sum_probs=182.3
Q ss_pred CCChhhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCC-CccccCCCCCCE-EEcccCcccccCCcC
Q 042573 1 MLPEAVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRI-PGSIGDLQKLQR-LWLKGNKFWGEIPSS 78 (388)
Q Consensus 1 ~ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~-L~L~~n~~~~~~~~~ 78 (388)
+||..+ +.++++|+|++|+|+.+.+.+|.++++|++|+|++|.+.+.+ +..|.+++++++ +.+.+|++....|..
T Consensus 23 ~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 23 EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 367655 456999999999999877788999999999999999986544 457889998875 666778999888899
Q ss_pred ccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCC-CcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCC
Q 042573 79 IGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSK-NNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKN 157 (388)
Q Consensus 79 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~ 157 (388)
|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+...++.|++++|.++...+..| ...+
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~ 178 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQ 178 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccc
Confidence 99999999999999999977777777778888898865 566645555667766544899999999996555555 4467
Q ss_pred CCEEEccc-CcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcc
Q 042573 158 LGVISLSE-NKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLS 236 (388)
Q Consensus 158 L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~ 236 (388)
|+.|++.+ |.++...+..|..+++|+.|++++|+++...+.. +..|+.|.+.++.--...| .+..+++|+.+++.
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 99999975 6677555567899999999999999998554443 4667777776665444555 47889999999997
Q ss_pred ccc
Q 042573 237 FNH 239 (388)
Q Consensus 237 ~n~ 239 (388)
++.
T Consensus 255 ~~~ 257 (350)
T 4ay9_X 255 YPS 257 (350)
T ss_dssp CHH
T ss_pred CCc
Confidence 654
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=9e-25 Score=204.99 Aligned_cols=250 Identities=19% Similarity=0.145 Sum_probs=178.6
Q ss_pred cccEEEeecCceee----cCcccccCCCCCCEEECcCCccccCCCccc-----cCCCCCCEEEcccCcccccC----CcC
Q 042573 12 RLGKLSVAENQLFG----NIPSGLTNLVNLELLDLGDNQFTGRIPGSI-----GDLQKLQRLWLKGNKFWGEI----PSS 78 (388)
Q Consensus 12 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~----~~~ 78 (388)
+|++|++++|.++. .++..|..+++|++|++++|.+....+..+ ...++|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 49999999999985 457888999999999999999864333322 23567999999999887543 455
Q ss_pred ccCCCCCCEEeccCCcccccCCcCCC-----CCCCCCEEeCCCCcCCCc----CChhhhccCcccceEEccCccCcCCC-
Q 042573 79 IGNLTSLAILDFAENMLEGSIPSSLG-----KCQNLILLDLSKNNLSGT----IPTEVIGLPSFSIYLNLSQNQLNGPL- 148 (388)
Q Consensus 79 ~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~l~~~L~l~~n~~~~~~- 148 (388)
+..+++|++|++++|.+....+..+. .+++|+.|++++|.++.. ++..+..++.+ +.|++++|.+++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL-RELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC-CEEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc-cEEeccCCcCChHHH
Confidence 66788999999999988754333332 356899999999988753 35566777888 89999998876532
Q ss_pred ----CcccccCCCCCEEEcccCccccc----CChhhccccccceecccCccccccCCccCc-----CCCCCCEEECCCCc
Q 042573 149 ----PSNFGILKNLGVISLSENKLSGE----IPSSLGSCIRLEQLVMNGNFFRGNIPSSFS-----SLRGIEKLDLSRNN 215 (388)
Q Consensus 149 ----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~ 215 (388)
+..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 22223578899999999988753 455666788899999999888654333222 23688888888888
Q ss_pred Cccc----cchhhhcCCCCcEEEcccccCcccCCCC------CcCCCCccccccCCC
Q 042573 216 LSGR----IPKYFENFLFLQKLNLSFNHFEGEVPIK------GVFSNSSAISLDGND 262 (388)
Q Consensus 216 l~~~----~~~~l~~l~~L~~l~l~~n~~~~~~~~~------~~~~~~~~~~~~~~~ 262 (388)
+++. .+..+..+++|+.|++++|.++...+.. ...+.+..+++.+|.
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 8765 4556667788888888888876532110 113466677776664
No 92
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=1.3e-20 Score=180.98 Aligned_cols=222 Identities=27% Similarity=0.342 Sum_probs=153.1
Q ss_pred cccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 12 RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 12 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|.++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4999999999999 5666554 89999999999998 4555 5789999999999987 4554 78999999999
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCC--CcccccC--------------
Q 042573 92 ENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPL--PSNFGIL-------------- 155 (388)
Q Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~--~~~~~~l-------------- 155 (388)
+|.++. +|. .+++|+.|++++|+++. +|.. ++.+ ++|++++|.+++.. +..+..+
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L-~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~ 180 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGL-QELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP 180 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTC-CEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCC-CEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccC
Confidence 999985 444 56899999999999984 5543 3666 89999999887531 1222222
Q ss_pred CCCCEEEcccCcccccCChhh---cc--------------ccccceecccCccccccCCccCcCCCCCCEEECCCCcCcc
Q 042573 156 KNLGVISLSENKLSGEIPSSL---GS--------------CIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSG 218 (388)
Q Consensus 156 ~~L~~L~L~~n~l~~~~~~~~---~~--------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 218 (388)
++|+.|++++|.+++ +|..+ .. +++|+.|++++|.+++ +| ..+++|+.|++++|.++.
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred CCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc
Confidence 667777777777764 22211 11 1445555555555553 33 234566667777766663
Q ss_pred ccchhhhcCCCCcEEEcccccCcccCC-CCCcCCCCccccccCCCC
Q 042573 219 RIPKYFENFLFLQKLNLSFNHFEGEVP-IKGVFSNSSAISLDGNDN 263 (388)
Q Consensus 219 ~~~~~l~~l~~L~~l~l~~n~~~~~~~-~~~~~~~~~~~~~~~~~~ 263 (388)
. |. .+++|+.|++++|.++ .+| ....++++..+++.+|+.
T Consensus 256 l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 256 L-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp C-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred C-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence 3 32 4566777777777777 333 224455666777777654
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2e-21 Score=162.00 Aligned_cols=164 Identities=24% Similarity=0.212 Sum_probs=145.6
Q ss_pred cccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEe
Q 042573 10 STRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILD 89 (388)
Q Consensus 10 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 89 (388)
+++|++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|++++|.+++..+..|..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34599999999999988777899999999999999999977777789999999999999999977777789999999999
Q ss_pred ccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCccc
Q 042573 90 FAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLS 169 (388)
Q Consensus 90 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 169 (388)
+++|.+++..+..+..+++|+.|++++|.+++..+..+..++.+ +.|++++|.+.+ .+++|+.|+++.|.++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL-QYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc-cEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 99999997777778999999999999999996666668889999 999999998773 4568999999999999
Q ss_pred ccCChhhccccc
Q 042573 170 GEIPSSLGSCIR 181 (388)
Q Consensus 170 ~~~~~~~~~l~~ 181 (388)
+.+|..++.++.
T Consensus 179 g~ip~~~~~l~~ 190 (208)
T 2o6s_A 179 GVVRNSAGSVAP 190 (208)
T ss_dssp TTBBCTTSSBCT
T ss_pred ceeeccCccccC
Confidence 999988776554
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=8.9e-24 Score=198.21 Aligned_cols=259 Identities=18% Similarity=0.111 Sum_probs=178.5
Q ss_pred CChhhhhccccccEEEeecCceeecCcccc-----cCCCCCCEEECcCCccccCC----CccccCCCCCCEEEcccCccc
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLFGNIPSGL-----TNLVNLELLDLGDNQFTGRI----PGSIGDLQKLQRLWLKGNKFW 72 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~~~ 72 (388)
+|..+..+++ |++|++++|.+++..+..+ ...++|++|++++|.++... +..+..+++|++|++++|.+.
T Consensus 105 l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 105 LSSTLRTLPT-LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHTTSCTT-CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHccCCc-eeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 3566778886 9999999999876544333 33568999999999887532 455667789999999999876
Q ss_pred ccCCcCcc-----CCCCCCEEeccCCccccc----CCcCCCCCCCCCEEeCCCCcCCCcCChh-----hhccCcccceEE
Q 042573 73 GEIPSSIG-----NLTSLAILDFAENMLEGS----IPSSLGKCQNLILLDLSKNNLSGTIPTE-----VIGLPSFSIYLN 138 (388)
Q Consensus 73 ~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~~~l~~~L~ 138 (388)
...+..+. ..++|++|++++|.++.. ++..+..+++|+.|++++|.+.+..... +..++.+ +.|+
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L-~~L~ 262 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL-RTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC-CEEE
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc-eEEE
Confidence 54433332 356889999998888753 4566677888888888888876432211 1246667 8888
Q ss_pred ccCccCcCC----CCcccccCCCCCEEEcccCcccccCChhhcc-----ccccceecccCcccccc----CCccCcCCCC
Q 042573 139 LSQNQLNGP----LPSNFGILKNLGVISLSENKLSGEIPSSLGS-----CIRLEQLVMNGNFFRGN----IPSSFSSLRG 205 (388)
Q Consensus 139 l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~----~~~~~~~l~~ 205 (388)
+++|.++.. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.+++. ++..+..+++
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 888888753 4555667888888888888886544333332 25788888888887754 3455556688
Q ss_pred CCEEECCCCcCccccchhhhc-----CCCCcEEEcccccCcc----cCCC-CCcCCCCccccccCCC
Q 042573 206 IEKLDLSRNNLSGRIPKYFEN-----FLFLQKLNLSFNHFEG----EVPI-KGVFSNSSAISLDGND 262 (388)
Q Consensus 206 L~~L~l~~n~l~~~~~~~l~~-----l~~L~~l~l~~n~~~~----~~~~-~~~~~~~~~~~~~~~~ 262 (388)
|++|++++|.+++..+..+.. .++|+.|++++|.++. .++. ....+.+..+++.+|+
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 888888888887655544432 5678888888888774 2221 1234566777776665
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=1.9e-21 Score=163.29 Aligned_cols=157 Identities=22% Similarity=0.312 Sum_probs=101.0
Q ss_pred CEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccC
Q 042573 62 QRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQ 141 (388)
Q Consensus 62 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~ 141 (388)
+.++++++.++ .+|..+. ++|++|++++|.++...+..|..+++|+.|++++|.+..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-------------------- 70 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-------------------- 70 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------------------
Confidence 45566666555 3343332 456666666666665545555555666666665555543
Q ss_pred ccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccc
Q 042573 142 NQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIP 221 (388)
Q Consensus 142 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 221 (388)
..+..|.++++|++|+|++|.++...+..|..+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+
T Consensus 71 -----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 71 -----LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp -----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -----cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 344455555666666666666664444445666667777777777766666777777788888888888887777
Q ss_pred hhhhcCCCCcEEEcccccCcccCCC
Q 042573 222 KYFENFLFLQKLNLSFNHFEGEVPI 246 (388)
Q Consensus 222 ~~l~~l~~L~~l~l~~n~~~~~~~~ 246 (388)
..+..+++|+.|++++|++.|.|..
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred HHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 7777788888888888888877653
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=6.9e-21 Score=180.63 Aligned_cols=187 Identities=25% Similarity=0.319 Sum_probs=146.9
Q ss_pred cccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 12 RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 12 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
+|++|++++|.+++ +|..+ +++|++|+|++|.++ .+| ..+++|++|+|++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 48999999999886 55544 378999999999988 566 457889999999998886 565 655 89999999
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCccccc
Q 042573 92 ENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGE 171 (388)
Q Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 171 (388)
+|.+++ +|. .+++|+.|++++|.+++ +|. .++.+ +.|++++|.+++ +|. |. ++|+.|+|++|.|+ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 999886 555 67889999999999885 555 45667 889999999886 554 55 88999999999988 5
Q ss_pred CChhhcccccc-------ceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcC
Q 042573 172 IPSSLGSCIRL-------EQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENF 227 (388)
Q Consensus 172 ~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 227 (388)
+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+|++|.+++..|..+..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 555 543 66 88999999888 567777778899999999999988888777664
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=5.1e-21 Score=173.30 Aligned_cols=181 Identities=23% Similarity=0.176 Sum_probs=120.1
Q ss_pred CEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCcc-CCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCC
Q 042573 38 ELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIG-NLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSK 116 (388)
Q Consensus 38 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 116 (388)
+.++++++.+. .+|..+. ..++.|+|++|.+++..+..|. .+++|++|+|++|.++...+..|.++++|+.|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56777777776 4554442 3467777777777766666665 777777777777777766666677777777777777
Q ss_pred CcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccC
Q 042573 117 NNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNI 196 (388)
Q Consensus 117 n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 196 (388)
|++....+ ..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.++...
T Consensus 98 N~l~~~~~-------------------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 98 NHLHTLDE-------------------------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp SCCCEECT-------------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CcCCcCCH-------------------------HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 66654333 33445555555666666655555555556666666666666665433
Q ss_pred CccC---cCCCCCCEEECCCCcCccccchhhhcCCC--CcEEEcccccCcccCCC
Q 042573 197 PSSF---SSLRGIEKLDLSRNNLSGRIPKYFENFLF--LQKLNLSFNHFEGEVPI 246 (388)
Q Consensus 197 ~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~l~l~~n~~~~~~~~ 246 (388)
+..+ ..+++|+.|+|++|+++...+..+..++. ++.|++++|+|.|.|..
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 3333 45788889999999888777777887776 47899999999888753
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=162.24 Aligned_cols=138 Identities=22% Similarity=0.235 Sum_probs=98.7
Q ss_pred CCEEeCCCCcCCCcCC-hhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecc
Q 042573 109 LILLDLSKNNLSGTIP-TEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVM 187 (388)
Q Consensus 109 L~~L~l~~n~~~~~~~-~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 187 (388)
++.|++++|.+++..+ ..+..++.+ +.|++++|.+++..+..|.++++|+.|+|++|.+++..+..|..+++|++|++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 3445555554443322 224445555 55555555555555556677777777888888777666666777888888888
Q ss_pred cCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCCC
Q 042573 188 NGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPIK 247 (388)
Q Consensus 188 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~ 247 (388)
++|.+++..|..+..+++|++|+|++|++++..|..+..+++|+.|++++|++.|.|+..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 888888777788888888888888888888887888888888999999999998887743
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=8.1e-20 Score=173.34 Aligned_cols=181 Identities=24% Similarity=0.354 Sum_probs=152.2
Q ss_pred CCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCC
Q 042573 36 NLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLS 115 (388)
Q Consensus 36 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 115 (388)
+|+.|++++|.+++ +|..+ +++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999985 66655 378999999999998 566 457999999999999996 666 655 99999999
Q ss_pred CCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCcccccc
Q 042573 116 KNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGN 195 (388)
Q Consensus 116 ~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 195 (388)
+|.+++ +|. .++.+ +.|++++|.+++ +|. .+++|+.|+|++|.+++ +|. +. ++|+.|++++|.++ .
T Consensus 129 ~N~l~~-lp~---~l~~L-~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALL-EYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccc-cEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 999986 665 56777 999999999996 444 57899999999999996 565 65 89999999999998 5
Q ss_pred CCccCcCCCCC-------CEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCC
Q 042573 196 IPSSFSSLRGI-------EKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 196 ~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~ 245 (388)
+|. +.. +| +.|+|++|+++ .+|..+..+++|+.|++++|++++.+|
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 565 553 77 99999999999 467777779999999999999987654
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=3.7e-20 Score=167.60 Aligned_cols=177 Identities=24% Similarity=0.185 Sum_probs=142.5
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCcccc-CCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIG-DLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
-++++++++.++. +|..+. +.++.|+|++|.++...+..|. ++++|++|+|++|.+.+..+..|..+++|++|+|+
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 5789999999885 555443 5689999999999987777787 89999999999999998888889999999999999
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCccc---ccCCCCCEEEcccCcc
Q 042573 92 ENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNF---GILKNLGVISLSENKL 168 (388)
Q Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~---~~l~~L~~L~L~~n~l 168 (388)
+|.++...+..|..+++|+.|+|++|.+....+..+..++.| +.|++++|.++...+..| ..+++|+.|+|++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL-QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC-CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 999998777889999999999999999987777788888888 888888888886554455 5578888888888888
Q ss_pred cccCChhhccccc--cceecccCcccc
Q 042573 169 SGEIPSSLGSCIR--LEQLVMNGNFFR 193 (388)
Q Consensus 169 ~~~~~~~~~~l~~--L~~L~l~~n~l~ 193 (388)
+...+..+..++. ++.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 7555555666655 356666666554
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=7.8e-21 Score=182.21 Aligned_cols=190 Identities=23% Similarity=0.382 Sum_probs=134.7
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4445566666654432 4567788888888888763 34 47778888888888888775443 77888888888888
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccC
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEI 172 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 172 (388)
|.+.. + ..+..+++|+.|+|++|.+.+ + ..+..++.| +.|++++|.+++. ..+..+++|+.|+|++|.+++..
T Consensus 97 N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 88774 2 367778888888888888764 2 456777777 7778877777754 45677777777888777777554
Q ss_pred ChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccc
Q 042573 173 PSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGR 219 (388)
Q Consensus 173 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 219 (388)
| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 4 66777777777777777643 3466777777777777777654
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1.1e-19 Score=152.47 Aligned_cols=153 Identities=22% Similarity=0.248 Sum_probs=99.4
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
-+.++++++.++. +|..+. ++|+.|++++|.+....+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++
T Consensus 13 ~~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 4566677776663 344332 5677777777777665566677777777777777777666666777777777777777
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCccc
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLS 169 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 169 (388)
|.++...+..|..+++|+.|++++|.+.+..+..+..++.+ +.|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL-NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC-CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77775555556667777777777777665555556666666 66666666666555555666666666666666554
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=2.7e-20 Score=163.25 Aligned_cols=191 Identities=23% Similarity=0.356 Sum_probs=145.7
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
+..+.+..+.+++.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 333455555555432 24567888888888888873 34 47778888888888888875443 88888888888888
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccC
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEI 172 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 172 (388)
|.++.. ..+..+++|+.|++++|++.+. ..+..++.+ +.|++++|.+++. ..+..+++|+.|++++|.+++..
T Consensus 100 n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 100 NKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp SCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCC-CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 888752 3478888888888888888743 467778888 8889988888865 56788889999999999888654
Q ss_pred ChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCcccc
Q 042573 173 PSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRI 220 (388)
Q Consensus 173 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 220 (388)
+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++...
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred h--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 4 78888999999999988754 3 4778889999999999887543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=6.3e-20 Score=160.93 Aligned_cols=190 Identities=20% Similarity=0.263 Sum_probs=160.2
Q ss_pred CCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCC
Q 042573 36 NLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLS 115 (388)
Q Consensus 36 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 115 (388)
++..+.+..+.+.... .+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|+.|+++
T Consensus 25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 3445556666665322 345789999999999998744 3 58899999999999999996544 8999999999999
Q ss_pred CCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCcccccc
Q 042573 116 KNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGN 195 (388)
Q Consensus 116 ~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 195 (388)
+|.+.+ . ..+..++.+ +.|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 99 ~n~l~~-~-~~l~~l~~L-~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 99 ENKVKD-L-SSLKDLKKL-KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp SSCCCC-G-GGGTTCTTC-CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCC-C-hhhccCCCC-CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 999974 3 448889999 9999999999864 5688999999999999999865 5688999999999999999866
Q ss_pred CCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcc
Q 042573 196 IPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEG 242 (388)
Q Consensus 196 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~ 242 (388)
.+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred hh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 54 88999999999999999865 3 48899999999999999875
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.8e-19 Score=152.25 Aligned_cols=156 Identities=22% Similarity=0.261 Sum_probs=93.7
Q ss_pred CCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEcc
Q 042573 61 LQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140 (388)
Q Consensus 61 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~ 140 (388)
-+.++.+++.+. .+|..+. ++|++|+|++|.+.+..+..|..+++|+.|++++|++.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-------------------- 77 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-------------------- 77 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC--------------------
Confidence 345666655554 3343332 55666666666666555555556666666666655554
Q ss_pred CccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCcccc
Q 042573 141 QNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRI 220 (388)
Q Consensus 141 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 220 (388)
...+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..
T Consensus 78 -----~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 78 -----ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp -----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred -----CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence 333334455555666666666665444444555666666666666665 45555666677777777777777666
Q ss_pred chhhhcCCCCcEEEcccccCcccCC
Q 042573 221 PKYFENFLFLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 221 ~~~l~~l~~L~~l~l~~n~~~~~~~ 245 (388)
+..+..+++|+.|++++|++.|.|+
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHHHhCCCCCCEEEeeCCCccCCcc
Confidence 6666777777777777777777665
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=151.20 Aligned_cols=154 Identities=22% Similarity=0.265 Sum_probs=106.2
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCC-ccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIP-GSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
-+++++++|.++. +|..+. +.+++|++++|.+++..+ ..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 4577777777764 444332 456777777777775533 446677777777777777776666677777777777777
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccc
Q 042573 92 ENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSG 170 (388)
Q Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 170 (388)
+|.+++..+..|..+++|++|++++|++.+..+..+..++.+ +.|++++|.+++..|..|..+++|+.|++++|.+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV-RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC-SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC-CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 777776666667777777777777777776666666666666 677777777766666666666777777777766653
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.6e-19 Score=173.18 Aligned_cols=175 Identities=24% Similarity=0.305 Sum_probs=152.5
Q ss_pred hhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCC
Q 042573 6 VGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSL 85 (388)
Q Consensus 6 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 85 (388)
+..++. |++|++++|.+... + .|..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ + +.+..+++|
T Consensus 39 ~~~L~~-L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNS-IDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKL 111 (605)
T ss_dssp HHHHTT-CCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTC
T ss_pred hhcCCC-CCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCC
Confidence 356766 99999999999854 3 58999999999999999985544 8899999999999999874 3 378999999
Q ss_pred CEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEccc
Q 042573 86 AILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSE 165 (388)
Q Consensus 86 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 165 (388)
++|+|++|.+... ..+..+++|+.|+|++|.+.+. ..+..++.| +.|++++|.+.+..+ +..+++|+.|+|++
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L-~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-DTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC-SEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC-CEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence 9999999999853 5688999999999999999854 678899999 999999999997665 89999999999999
Q ss_pred CcccccCChhhccccccceecccCccccccC
Q 042573 166 NKLSGEIPSSLGSCIRLEQLVMNGNFFRGNI 196 (388)
Q Consensus 166 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 196 (388)
|.+++. ..+..+++|+.|+|++|.+.+..
T Consensus 185 N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 185 NHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 999864 35889999999999999998543
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=6.4e-19 Score=148.91 Aligned_cols=153 Identities=26% Similarity=0.315 Sum_probs=109.5
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
-+.++.+++.++ .+|..+. ++|++|+|++|.+.+..+..|.++++|++|+|++|.+....+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 567777777776 3444333 6788888888888776677777788888888888877655556677778888888888
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccc
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSG 170 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 170 (388)
|.++...+..|..+++|+.|++++|++. .+|..+..++.+ +.|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL-THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC-CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 8777666666777778888888777777 566666666666 677777777765555566666777777777766653
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=4.8e-19 Score=146.17 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=108.1
Q ss_pred cCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCE
Q 042573 32 TNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLIL 111 (388)
Q Consensus 32 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 111 (388)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.+. .++.+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55667777777777776 444 5667777777777777553 2346777777777777777777666677777777777
Q ss_pred EeCCCCcCCCcCChhhhccCcccceEEccCcc-CcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCc
Q 042573 112 LDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQ-LNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGN 190 (388)
Q Consensus 112 L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 190 (388)
|++++|.+++..+..+..++.+ +.|++++|. ++ ..+ .+..+++|+.|++++|.+++. + .+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L-~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKV-NSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSC-CEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCC-CEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCc
Confidence 7777777776666677777777 777887776 44 333 577778888888888888743 3 5677788888888888
Q ss_pred ccc
Q 042573 191 FFR 193 (388)
Q Consensus 191 ~l~ 193 (388)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 765
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=9.9e-19 Score=144.25 Aligned_cols=153 Identities=14% Similarity=0.192 Sum_probs=87.3
Q ss_pred cCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccc
Q 042573 56 GDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSI 135 (388)
Q Consensus 56 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 135 (388)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+..++.+ +
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL-T 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC-C
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC-C
Confidence 44556666666666655 333 45566666666666664432 2355566666666666666655455556666666 6
Q ss_pred eEEccCccCcCCCCcccccCCCCCEEEcccCc-ccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCC
Q 042573 136 YLNLSQNQLNGPLPSNFGILKNLGVISLSENK-LSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN 214 (388)
Q Consensus 136 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 214 (388)
+|++++|.+++..+..+..+++|+.|++++|. ++ .++ .+..+++|+.|++++|.+++. + .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCc
Confidence 66666666665555556666666666666665 43 333 455666666666666666532 2 4455566666666666
Q ss_pred cCc
Q 042573 215 NLS 217 (388)
Q Consensus 215 ~l~ 217 (388)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 654
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=4.7e-19 Score=152.93 Aligned_cols=167 Identities=22% Similarity=0.301 Sum_probs=95.9
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
+..++++++.+++.. .+..+++|++|++++|.+. .++ .+..+++|++|+|++|.+.+..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 666677777776433 4666777777777777776 344 56667777777777777664433 66777777777777
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccC
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEI 172 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 172 (388)
|.+++. +. +.. ++|+.|++++|.+++ . ..+.. +++|+.|++++|.+++.
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~-------------------------l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRD-T-DSLIH-------------------------LKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSB-S-GGGTT-------------------------CTTCCEEECTTSCCCBC-
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCC-C-hhhcC-------------------------cccccEEECCCCcCCCC-
Confidence 776642 22 222 566666666666553 1 23444 44455555555554432
Q ss_pred ChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccc
Q 042573 173 PSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGR 219 (388)
Q Consensus 173 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 219 (388)
+ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.++..
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 1 344455555555555555433 3444555556666665555533
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=5.6e-19 Score=144.98 Aligned_cols=133 Identities=26% Similarity=0.352 Sum_probs=68.5
Q ss_pred CEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEccc
Q 042573 86 AILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSE 165 (388)
Q Consensus 86 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 165 (388)
+++++++|.++ .+|..+. .+|+.|++++|.+.+..+.. .|..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~------------------------~~~~l~~L~~L~Ls~ 63 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDG------------------------LFGRLPHLVKLELKR 63 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSC------------------------SGGGCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcc------------------------ccccCCCCCEEECCC
Confidence 45666666664 3444332 25555555555555333221 244445555555555
Q ss_pred CcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCC
Q 042573 166 NKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 166 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~ 245 (388)
|.+++..|..|..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|+++|.++
T Consensus 64 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 64 NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 55554444445555555555555555554444445555555555555555555555555555555555555555555544
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=1.2e-21 Score=186.68 Aligned_cols=180 Identities=21% Similarity=0.242 Sum_probs=94.0
Q ss_pred cCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCc-------------ccccCCcCccCCCCCCEEe-ccCCcccc
Q 042573 32 TNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNK-------------FWGEIPSSIGNLTSLAILD-FAENMLEG 97 (388)
Q Consensus 32 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~n~l~~ 97 (388)
..+++|+.|+|++|.+. .+|..++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45677788888888776 567777777788877776553 2334455566666666666 44443220
Q ss_pred cCCc------CCC--CCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCccc
Q 042573 98 SIPS------SLG--KCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLS 169 (388)
Q Consensus 98 ~~~~------~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 169 (388)
. +. .+. ....|+.|++++|.+++ +|. +..++.+ +.|++++|.++ .+|..+..+++|+.|+|++|.++
T Consensus 425 L-~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 425 L-RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp H-HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred h-hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccC-cEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 0 00 000 00124555555555542 333 4444444 45555555554 34444555555555555555554
Q ss_pred ccCChhhccccccceecccCccccccC-CccCcCCCCCCEEECCCCcCccc
Q 042573 170 GEIPSSLGSCIRLEQLVMNGNFFRGNI-PSSFSSLRGIEKLDLSRNNLSGR 219 (388)
Q Consensus 170 ~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 219 (388)
+ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|+|++|.+++.
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 3 23 4444555555555555554443 44555555555555555555443
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.2e-18 Score=150.35 Aligned_cols=171 Identities=21% Similarity=0.223 Sum_probs=119.9
Q ss_pred CCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEE
Q 042573 33 NLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILL 112 (388)
Q Consensus 33 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 112 (388)
++.++..++++++.+.. ++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 34455566666666652 22 35566666666666666552 33 45566666666666666654322 5556666666
Q ss_pred eCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccc
Q 042573 113 DLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFF 192 (388)
Q Consensus 113 ~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 192 (388)
++++|++. +..+ +.. ++|+.|++++|.+++. ..+..+++|+.|++++|++
T Consensus 91 ~L~~N~l~-------------------------~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 91 SVNRNRLK-------------------------NLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp ECCSSCCS-------------------------CCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccC-------------------------CcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcC
Confidence 66655554 2111 112 6889999999998853 3588999999999999999
Q ss_pred cccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCccc
Q 042573 193 RGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGE 243 (388)
Q Consensus 193 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~ 243 (388)
++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 141 ~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 141 KSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 865 3 678899999999999999977 6788999999999999999865
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=2.4e-18 Score=153.80 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=52.4
Q ss_pred ccccccEEEeecCcee--ecCcccccCCCCCCEEECcCCccccCCCccccC--------CCCCCEEEcccCcccccCCcC
Q 042573 9 LSTRLGKLSVAENQLF--GNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGD--------LQKLQRLWLKGNKFWGEIPSS 78 (388)
Q Consensus 9 l~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~ 78 (388)
++ +|++|||++|++. ......+ +.++.+.+..+.+ .+..|.+ |++|+.|+|.. .++.+.+.+
T Consensus 48 l~-~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FP-SLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CT-TCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hc-cCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 44 4999999999998 2222212 1233344444422 2334444 55666666655 455444555
Q ss_pred ccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCC
Q 042573 79 IGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLS 115 (388)
Q Consensus 79 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 115 (388)
|.++++|++|++..|.+....+..|..+.++..+.+.
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCc
Confidence 5566666666666555554455555555544444443
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=8.9e-19 Score=172.04 Aligned_cols=217 Identities=21% Similarity=0.193 Sum_probs=123.5
Q ss_pred ccEEEeecCceeecCcccccCCCCCCE-----EECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCE
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLEL-----LDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAI 87 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~-----L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 87 (388)
++.|+|.+|.+... +..+-....|.. +++..|.+. ..+..+..+++|+.|+|++|.+. .+|..+..+++|++
T Consensus 175 ~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 175 TPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSC
T ss_pred cceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCE
Confidence 78889988888753 333322233333 333344444 56778889999999999999988 67777779999999
Q ss_pred EeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCc
Q 042573 88 LDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENK 167 (388)
Q Consensus 88 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 167 (388)
|+|++|.++ .+|..|.++++|+.|+|++|.++ .+|..+..++.| ++|++++|.++ .+|..|..+++|+.|+|++|.
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL-KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC-SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC-CEEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence 999999999 78899999999999999999999 789999999999 99999999998 667779999999999999999
Q ss_pred ccccCChhhccccc-cceecccCccccccCCccCcCCCCCCEEECCCC--------cCccccchhhhcCCCCcEEEcccc
Q 042573 168 LSGEIPSSLGSCIR-LEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN--------NLSGRIPKYFENFLFLQKLNLSFN 238 (388)
Q Consensus 168 l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--------~l~~~~~~~l~~l~~L~~l~l~~n 238 (388)
+++.+|..+..+.. +..+++++|.+++.+|. .|+.|+++.| .+.+..+..+..+..+....+++|
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~N 401 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYN 401 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecc
Confidence 99888877765432 34578999999877665 4566667766 333333334445555566677777
Q ss_pred cCcc
Q 042573 239 HFEG 242 (388)
Q Consensus 239 ~~~~ 242 (388)
-+..
T Consensus 402 il~~ 405 (727)
T 4b8c_D 402 TLCQ 405 (727)
T ss_dssp CCCG
T ss_pred cccc
Confidence 7653
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=4.7e-18 Score=139.45 Aligned_cols=131 Identities=24% Similarity=0.336 Sum_probs=97.9
Q ss_pred EEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCc
Q 042573 111 LLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGN 190 (388)
Q Consensus 111 ~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 190 (388)
.++++++++. .+|..+. +.+ +.|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|..+++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l-~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDV-TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTC-CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCCC--CCC-CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4455555544 3333221 233 56666666665 44566777778888888888887776777888888888888888
Q ss_pred cccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCC
Q 042573 191 FFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPI 246 (388)
Q Consensus 191 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~ 246 (388)
.+++..+..+..+++|+.|+|++|+++...+..|..+++|+.|++++|++.|.|..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 88877777888889999999999999977777888899999999999999988764
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=4.1e-21 Score=183.08 Aligned_cols=184 Identities=21% Similarity=0.182 Sum_probs=152.7
Q ss_pred cCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCc-------------ccccCCcCCCCCCCCCEEe-CCCCcCCC
Q 042573 56 GDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENM-------------LEGSIPSSLGKCQNLILLD-LSKNNLSG 121 (388)
Q Consensus 56 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~~ 121 (388)
..+++|+.|+|++|.+. .+|..++++++|+.|+++.|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 57899999999999997 779999999999999997764 3455667778888888888 5555433
Q ss_pred cCCh------hhhc--cCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCcccc
Q 042573 122 TIPT------EVIG--LPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFR 193 (388)
Q Consensus 122 ~~~~------~~~~--~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 193 (388)
.++. .+.. ...+ +.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L-~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADV-RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhhhhcccccccCccCc-eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 1111 1111 1235 899999999996 555 999999999999999999 77889999999999999999999
Q ss_pred ccCCccCcCCCCCCEEECCCCcCcccc-chhhhcCCCCcEEEcccccCcccCCCC
Q 042573 194 GNIPSSFSSLRGIEKLDLSRNNLSGRI-PKYFENFLFLQKLNLSFNHFEGEVPIK 247 (388)
Q Consensus 194 ~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~l~l~~n~~~~~~~~~ 247 (388)
+ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..+..
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 6 56 7899999999999999999887 999999999999999999999876643
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=3.7e-17 Score=134.11 Aligned_cols=174 Identities=22% Similarity=0.308 Sum_probs=110.3
Q ss_pred CEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCc-CCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEcc
Q 042573 62 QRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPS-SLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLS 140 (388)
Q Consensus 62 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~ 140 (388)
+++++++|.+. .+|..+.. +|++|++++|.++...+. .|..+++|++|++++|.+++..|..+..+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---------- 77 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA---------- 77 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc----------
Confidence 78999999986 66665543 999999999999876654 48899999999999888876555555444
Q ss_pred CccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCcccc
Q 042573 141 QNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRI 220 (388)
Q Consensus 141 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 220 (388)
++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..|..+..+++|++|++++|.+....
T Consensus 78 ---------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 78 ---------------SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp ---------------TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred ---------------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 44555555555555444444555566666666666666566666677777788888888777554
Q ss_pred c-hhhhcCCCCcEEEcccccCcccCCCCCcCCCCccccccCCCCCcCC
Q 042573 221 P-KYFENFLFLQKLNLSFNHFEGEVPIKGVFSNSSAISLDGNDNLCGG 267 (388)
Q Consensus 221 ~-~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 267 (388)
+ .++.. .++...+..+...|..| ..+......++..+...|..
T Consensus 143 ~l~~~~~--~l~~~~~~~~~~~C~~P--~~l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 143 HLAWFAE--WLRKKSLNGGAARCGAP--SKVRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp GGHHHHH--HHHHHCCSGGGCBBCSS--TTTTTSBGGGSCTTTCCCCC
T ss_pred cchHHHH--HHHHcCCCCCCCCCCCC--hHHcCCChhhCcHhhcCcCC
Confidence 3 22211 12222334445555444 23444444455555556654
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.3e-18 Score=170.86 Aligned_cols=181 Identities=25% Similarity=0.295 Sum_probs=113.3
Q ss_pred cCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCC
Q 042573 26 NIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGK 105 (388)
Q Consensus 26 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 105 (388)
..+..|..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34677888888999999999887 66666668888999999999888 77888888999999999999888 67888888
Q ss_pred CCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCC-CCEEEcccCcccccCChhhccccccce
Q 042573 106 CQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKN-LGVISLSENKLSGEIPSSLGSCIRLEQ 184 (388)
Q Consensus 106 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~ 184 (388)
+++|++|+|++|.++ .+|..+..++.| +.|++++|.+++..|..+..+.. +..++|++|.+++.+|. .|..
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L-~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~ 363 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNL-QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRF 363 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTC-CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCc-cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccce
Confidence 889999999988887 677778888888 88999999888777766654321 22467888888877665 3455
Q ss_pred ecccCc--------cccccCCccCcCCCCCCEEECCCCcCc
Q 042573 185 LVMNGN--------FFRGNIPSSFSSLRGIEKLDLSRNNLS 217 (388)
Q Consensus 185 L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~ 217 (388)
|+++.| .+.+..+..+..+..+....++.|-+.
T Consensus 364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------------CCC
T ss_pred eEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 566655 233333334445555666667777654
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.6e-17 Score=148.40 Aligned_cols=225 Identities=14% Similarity=0.157 Sum_probs=159.7
Q ss_pred ccccccEEEeecCceeecCcccccC-CCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC------
Q 042573 9 LSTRLGKLSVAENQLFGNIPSGLTN-LVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN------ 81 (388)
Q Consensus 9 l~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~------ 81 (388)
++. +++|.++++ +...-...+.. +++|++|+|++|++. .....-+.++.++.+.+..+. +.+.+|.+
T Consensus 24 ~~~-l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANS-ITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HHH-CSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred hCc-eeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecCccccccccccccccccc---cCHHHhcccccccc
Confidence 444 899999864 22211223444 789999999999987 111112223335566666663 44567888
Q ss_pred --CCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccC----cCCCCccc---
Q 042573 82 --LTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQL----NGPLPSNF--- 152 (388)
Q Consensus 82 --l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~----~~~~~~~~--- 152 (388)
+++|+.|+|.+ .++...+.+|.++++|+.|++..|.+....+..|..+..+ ..+....+.. ......+|
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l-~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTA-IFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCE-EEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCce-EEecCcchhhhhccccccccccccc
Confidence 99999999999 8887778899999999999999998876666666666555 4554433111 00000011
Q ss_pred -----------------------------------------------ccCCCCCEEEcccCcccccCChhhcccccccee
Q 042573 153 -----------------------------------------------GILKNLGVISLSENKLSGEIPSSLGSCIRLEQL 185 (388)
Q Consensus 153 -----------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 185 (388)
..+++|+.+++++|.++......|.++.+|+.+
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 126789999999888887777778888999999
Q ss_pred cccCccccccCCccCcCCCCCC-EEECCCCcCccccchhhhcCCCCcEEEcccccCccc
Q 042573 186 VMNGNFFRGNIPSSFSSLRGIE-KLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGE 243 (388)
Q Consensus 186 ~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~ 243 (388)
++.+| +....+.+|.++.+|+ .+++.+ .++.+.+.+|..+++|+.+++++|.++..
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 99888 7767778888888898 999888 77777778888999999999888887643
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=4.2e-17 Score=130.86 Aligned_cols=132 Identities=23% Similarity=0.238 Sum_probs=78.0
Q ss_pred CCCCEEECcCCccc-cCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEe
Q 042573 35 VNLELLDLGDNQFT-GRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLD 113 (388)
Q Consensus 35 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 113 (388)
++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666654 34455555566666666666665533 4555666666666666666554555555566666666
Q ss_pred CCCCcCCCcC-ChhhhccCcccceEEccCccCcCCCC---cccccCCCCCEEEcccCccc
Q 042573 114 LSKNNLSGTI-PTEVIGLPSFSIYLNLSQNQLNGPLP---SNFGILKNLGVISLSENKLS 169 (388)
Q Consensus 114 l~~n~~~~~~-~~~~~~~~~l~~~L~l~~n~~~~~~~---~~~~~l~~L~~L~L~~n~l~ 169 (388)
+++|.+++.. +..+..++.+ +.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L-~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECL-KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCC-CEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCC-CEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666665321 1455556666 666666666664443 35666777777777777665
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=4.6e-19 Score=171.41 Aligned_cols=238 Identities=13% Similarity=0.033 Sum_probs=111.0
Q ss_pred CChhhhhccccccEEEeecCcee---ecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCC-c
Q 042573 2 LPEAVGNLSTRLGKLSVAENQLF---GNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIP-S 77 (388)
Q Consensus 2 ip~~~~~l~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~ 77 (388)
+|..+..+++ |++|++++.... ...+..+..+++|+.|+++++... .+|..+..+++|++|+|++|.+..... .
T Consensus 235 l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 235 LVGFFKAAAN-LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp GHHHHHHCTT-CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred HHHHHhhhhH-HHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 4556667765 888888653222 112233445555555555554222 344444455555555555555332211 1
Q ss_pred CccCCCCCCEEeccC-----------------------------------Cccccc-CCcCCCCCCCCCEEeCCCCcCCC
Q 042573 78 SIGNLTSLAILDFAE-----------------------------------NMLEGS-IPSSLGKCQNLILLDLSKNNLSG 121 (388)
Q Consensus 78 ~~~~l~~L~~L~l~~-----------------------------------n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~ 121 (388)
.+..+++|++|+++. +.++.. ++.....+++|++|+++.+.+++
T Consensus 313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 234445555555442 222211 11112234555555554444443
Q ss_pred cCChhhhc-cCcccceEEcc----CccCcCC-----CCcccccCCCCCEEEcccCc--ccccCChhhc-cccccceeccc
Q 042573 122 TIPTEVIG-LPSFSIYLNLS----QNQLNGP-----LPSNFGILKNLGVISLSENK--LSGEIPSSLG-SCIRLEQLVMN 188 (388)
Q Consensus 122 ~~~~~~~~-~~~l~~~L~l~----~n~~~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~l~ 188 (388)
.....+.. ++.+ +.|+++ .|.+++. .+..+.++++|+.|+++.|. +++.....+. .+++|+.|+++
T Consensus 393 ~~~~~l~~~~~~L-~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 393 ESLESIGTYLKNL-CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHHHHHHHCCSC-CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred HHHHHHHhhCCCC-cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence 33333333 4444 555553 3344432 11223445556666654322 3322222222 25556666666
Q ss_pred Ccccccc-CCccCcCCCCCCEEECCCCcCccc-cchhhhcCCCCcEEEcccccCcc
Q 042573 189 GNFFRGN-IPSSFSSLRGIEKLDLSRNNLSGR-IPKYFENFLFLQKLNLSFNHFEG 242 (388)
Q Consensus 189 ~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~l~l~~n~~~~ 242 (388)
+|.+++. .+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|+++.
T Consensus 472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp SCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 6665542 233334556666666666665533 22333456666666666666553
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=1.1e-15 Score=139.37 Aligned_cols=217 Identities=12% Similarity=0.070 Sum_probs=148.2
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+-+..|.+|.+|+.+++..|.++.....+|. ..+|+.+.+..
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred ccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence 777777655 665666677774 577777775 55545566777778888888877777755556665 57777777764
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCccc---
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLS--- 169 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~--- 169 (388)
+ +.......|.++++|+.+++..+ +......+|.+ ..+ +.+.+. +.++.....+|.++++|+.+++.+|.+.
T Consensus 213 ~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L-~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 213 T-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI-TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp T-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC-SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred c-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc-cEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 3 55556677777788888887654 44344445555 455 677773 4455455667777888888888776654
Q ss_pred --ccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCc
Q 042573 170 --GEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 170 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~ 241 (388)
......|.++++|+.+.+.+ .++.....+|.++.+|+.+++.++ ++.....+|..+ +|+.+++.+|...
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 34556677778888888874 466566677777788888888554 665666777777 7888888777554
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=2.4e-16 Score=126.47 Aligned_cols=133 Identities=23% Similarity=0.180 Sum_probs=88.8
Q ss_pred CCCCCEEEcccCccc-ccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccce
Q 042573 58 LQKLQRLWLKGNKFW-GEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIY 136 (388)
Q Consensus 58 l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~ 136 (388)
.++|++|++++|.+. +.+|..+..+++|++|++++|.++.. ..+..+++|+.|++++|.+.+..|..+..++.+ ++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL-TH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC-CE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC-CE
Confidence 367888888888876 56676777788888888888887754 667777788888888777775566655556666 67
Q ss_pred EEccCccCcCCC-CcccccCCCCCEEEcccCcccccCC---hhhccccccceecccCcccc
Q 042573 137 LNLSQNQLNGPL-PSNFGILKNLGVISLSENKLSGEIP---SSLGSCIRLEQLVMNGNFFR 193 (388)
Q Consensus 137 L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~ 193 (388)
|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 777777666432 2455666666666666666664433 24555556666666555554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=6.1e-17 Score=127.18 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=58.6
Q ss_pred cccEEEeecCcee-ecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEec
Q 042573 12 RLGKLSVAENQLF-GNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDF 90 (388)
Q Consensus 12 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 90 (388)
+|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3666666666665 44555555666666666666665533 44555556666666666555444444445555555555
Q ss_pred cCCccccc-CCcCCCCCCCCCEEeCCCCcCC
Q 042573 91 AENMLEGS-IPSSLGKCQNLILLDLSKNNLS 120 (388)
Q Consensus 91 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~ 120 (388)
++|.+++. .+..+..+++|+.|++++|.++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 55555532 1244555555555555555554
No 127
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=4.8e-18 Score=164.29 Aligned_cols=133 Identities=14% Similarity=0.048 Sum_probs=63.3
Q ss_pred CCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCC-cccccCCCCCEEEcccCcccccCChhhcccc
Q 042573 102 SLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLP-SNFGILKNLGVISLSENKLSGEIPSSLGSCI 180 (388)
Q Consensus 102 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 180 (388)
.+..+++|+.|+++++.. ..++..+..++.+ ++|++++|.+++... ..+..+++|+.|+++++...+.++..+..++
T Consensus 265 ~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L-~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGP-NEMPILFPFAAQI-RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCCCTTCCEEEETTCCT-TTGGGGGGGGGGC-CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred HhhccccccccCccccch-hHHHHHHhhcCCC-cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCC
Confidence 344445555555544322 2344445555566 666666666543222 2245566666666663222222223334455
Q ss_pred ccceecccC-----------ccccccC-CccCcCCCCCCEEECCCCcCccccchhhhc-CCCCcEEEcc
Q 042573 181 RLEQLVMNG-----------NFFRGNI-PSSFSSLRGIEKLDLSRNNLSGRIPKYFEN-FLFLQKLNLS 236 (388)
Q Consensus 181 ~L~~L~l~~-----------n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~l~l~ 236 (388)
+|++|++++ |.+++.. +.....+++|++|++..|.+++..+..+.. +++|+.|+++
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 666666662 3333221 111223455666666555555444444433 5556666554
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=4.3e-16 Score=126.09 Aligned_cols=111 Identities=24% Similarity=0.310 Sum_probs=81.2
Q ss_pred ceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCC
Q 042573 135 IYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN 214 (388)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 214 (388)
+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 56666666665555555666777777777777777555555677777777777777777666666777788888888888
Q ss_pred cCccccchhhhcCCCCcEEEcccccCcccCC
Q 042573 215 NLSGRIPKYFENFLFLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 215 ~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~ 245 (388)
++++..+..+..+++|+.|++++|++.|.++
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 111 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8886666667778888888888888887766
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=3.5e-16 Score=122.80 Aligned_cols=127 Identities=21% Similarity=0.214 Sum_probs=65.9
Q ss_pred CCCCEEEcccCccc-ccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceE
Q 042573 59 QKLQRLWLKGNKFW-GEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYL 137 (388)
Q Consensus 59 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L 137 (388)
++|+.|++++|.+. +.+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..|..+..++.+ +.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL-THL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC-CEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC-CEE
Confidence 34555555555544 34444445555555555555555433 445555555555555555554344444445555 555
Q ss_pred EccCccCcCC-CCcccccCCCCCEEEcccCcccccCC---hhhccccccceeccc
Q 042573 138 NLSQNQLNGP-LPSNFGILKNLGVISLSENKLSGEIP---SSLGSCIRLEQLVMN 188 (388)
Q Consensus 138 ~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~ 188 (388)
++++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555432 12445556666666666666654433 345555555555554
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=1.7e-15 Score=138.23 Aligned_cols=220 Identities=13% Similarity=0.115 Sum_probs=183.9
Q ss_pred cccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 12 RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 12 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
+|+++.+.. .++.+...+|.++++|+.+++.+|.++.+....|. +.+|+.+.|..+ +..+...+|.++++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 499999986 77778888999999999999999999866667776 689999999855 776778899999999999998
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCc-----CCCCcccccCCCCCEEEcccC
Q 042573 92 ENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLN-----GPLPSNFGILKNLGVISLSEN 166 (388)
Q Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~L~~n 166 (388)
.+ ++......|.+ .+|+.+.+. +.+......+|.++..| +.+.+.++.+. .....+|.++++|+.+++..
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L-~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPEL-AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTC-CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCC-CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 75 55566677877 799999994 55665667789999999 99999888765 35667899999999999994
Q ss_pred cccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCC-CCcEEEcccccCc
Q 042573 167 KLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFL-FLQKLNLSFNHFE 241 (388)
Q Consensus 167 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~l~l~~n~~~ 241 (388)
.++......|.++.+|+.+.+..+ ++.....+|.++ +|+.+++.+|.+.......|..++ +++.+.+..+.+.
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 577677788999999999999766 666778899999 999999999998877778888875 6888888776543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=8.8e-16 Score=125.85 Aligned_cols=127 Identities=25% Similarity=0.317 Sum_probs=69.4
Q ss_pred cEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCC
Q 042573 14 GKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAEN 93 (388)
Q Consensus 14 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 93 (388)
++++++++.++. +|..+. ++|++|++++|.++ .+|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 455555555552 333222 45566666666555 44455555555555555555555554455555555555555555
Q ss_pred cccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCccc
Q 042573 94 MLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLS 169 (388)
Q Consensus 94 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 169 (388)
.++...+..|..+++|+.|++++|.++ ...+..|..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-------------------------VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-------------------------BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-------------------------eeChhhhhcCccccEEEeCCCCee
Confidence 555544445555555555555555554 333334555666666666666664
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=2.5e-15 Score=121.49 Aligned_cols=130 Identities=25% Similarity=0.269 Sum_probs=74.4
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
.+.++++++.++. +|..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 5566666666653 33222 24666666666666654455556666666666666666544444556666666666666
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccc
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSG 170 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 170 (388)
|.+++..+..+..+++|+.|++++|.++ +..+..+..+++|+.|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------------------------~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-------------------------SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-------------------------CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-------------------------EeCHHHhcCCcccCEEEecCCCeec
Confidence 6666544444555555555555555554 3333334555666666666666654
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=1.7e-15 Score=122.44 Aligned_cols=109 Identities=21% Similarity=0.198 Sum_probs=61.0
Q ss_pred ccCCCCCCEEECcCCccccCCCccccCC-CCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCC
Q 042573 31 LTNLVNLELLDLGDNQFTGRIPGSIGDL-QKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNL 109 (388)
Q Consensus 31 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 109 (388)
+.++.+|++|++++|.+. .++. +..+ ++|++|++++|.+++. ..|..+++|++|++++|.++...+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 556667777777777766 3343 3333 3677777777666643 456666666666666666664433334566666
Q ss_pred CEEeCCCCcCCCcCCh--hhhccCcccceEEccCccCc
Q 042573 110 ILLDLSKNNLSGTIPT--EVIGLPSFSIYLNLSQNQLN 145 (388)
Q Consensus 110 ~~L~l~~n~~~~~~~~--~~~~~~~l~~~L~l~~n~~~ 145 (388)
+.|++++|.+. .++. .+..++.+ +.|++++|.++
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L-~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSL-TYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTC-CEEECCSSGGG
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCC-CEEEecCCCCC
Confidence 66666666654 2332 33344444 44444444443
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=1.9e-17 Score=160.18 Aligned_cols=177 Identities=12% Similarity=0.123 Sum_probs=83.6
Q ss_pred hccccccEEEeecCc--eeec-CcccccCCCCCCEEECcCC-ccccCCCccccCCCCCCEEEcccCc-------------
Q 042573 8 NLSTRLGKLSVAENQ--LFGN-IPSGLTNLVNLELLDLGDN-QFTGRIPGSIGDLQKLQRLWLKGNK------------- 70 (388)
Q Consensus 8 ~l~~~L~~L~l~~~~--~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~------------- 70 (388)
.+++ |++|++++|. ++.. ++..+.++++|++|++++| .+. .++..+..+++|++|++..+.
T Consensus 182 ~~~~-L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 182 TYTS-LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TCCC-CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred cCCc-CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 4444 8888888776 2211 1222345688888888877 222 244444455555555543321
Q ss_pred -------------cc----ccCCcCccCCCCCCEEeccCCcccccC-CcCCCCCCCCCEEeCCCCcCCCc-CChhhhccC
Q 042573 71 -------------FW----GEIPSSIGNLTSLAILDFAENMLEGSI-PSSLGKCQNLILLDLSKNNLSGT-IPTEVIGLP 131 (388)
Q Consensus 71 -------------~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~ 131 (388)
+. ..++..+..+++|++|++++|.++... ...+..+++|+.|++++| +... .+.....++
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 00 112222234567777777777654321 122345666666666655 2211 111112345
Q ss_pred cccceEEccC---------ccCcCCCCccc-ccCCCCCEEEcccCcccccCChhhc-cccccceeccc
Q 042573 132 SFSIYLNLSQ---------NQLNGPLPSNF-GILKNLGVISLSENKLSGEIPSSLG-SCIRLEQLVMN 188 (388)
Q Consensus 132 ~l~~~L~l~~---------n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~ 188 (388)
.+ +.|++.+ +.+++.....+ ..+++|+.|.+..|.+++.....+. .+++|+.|+++
T Consensus 339 ~L-~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 339 DL-RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp TC-CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CC-CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 55 5665522 22222111111 2245555555555555433333332 34555555555
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=1.2e-14 Score=117.36 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=90.4
Q ss_pred cccCCCCCCEEEcccCcccccCCcCccCCC-CCCEEeccCCcccccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCc
Q 042573 54 SIGDLQKLQRLWLKGNKFWGEIPSSIGNLT-SLAILDFAENMLEGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPS 132 (388)
Q Consensus 54 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 132 (388)
.+.++.+|+.|++++|.+.. ++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..++.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 45678889999999998874 343 44444 889999998888864 67788888888888888887543344466777
Q ss_pred ccceEEccCccCcCCCCc--ccccCCCCCEEEcccCcccccCCh----hhccccccceecccCcccc
Q 042573 133 FSIYLNLSQNQLNGPLPS--NFGILKNLGVISLSENKLSGEIPS----SLGSCIRLEQLVMNGNFFR 193 (388)
Q Consensus 133 l~~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~ 193 (388)
+ ++|++++|.+.. .+. .+..+++|+.|++++|.++. .|. .+..+++|+.|++++|...
T Consensus 90 L-~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 L-TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp C-CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred C-CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7 777777777753 333 56666777777777777663 333 2555555666666555443
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=2e-16 Score=152.92 Aligned_cols=109 Identities=16% Similarity=0.193 Sum_probs=54.6
Q ss_pred hccccccEEEeecCceeecCccccc-CCCCCCEEECcCC-ccccC-CCccccCCCCCCEEEcccCcccccCCcCc----c
Q 042573 8 NLSTRLGKLSVAENQLFGNIPSGLT-NLVNLELLDLGDN-QFTGR-IPGSIGDLQKLQRLWLKGNKFWGEIPSSI----G 80 (388)
Q Consensus 8 ~l~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~ 80 (388)
.+++ |++|+|++|.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|+|++|.+++..+..+ .
T Consensus 103 ~~~~-L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTW-LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTT-CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCC-CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3443 66666666666554444443 4566666666666 33211 22233356666666666666543332222 2
Q ss_pred CCCCCCEEeccCCc--ccc-cCCcCCCCCCCCCEEeCCCC
Q 042573 81 NLTSLAILDFAENM--LEG-SIPSSLGKCQNLILLDLSKN 117 (388)
Q Consensus 81 ~l~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~l~~n 117 (388)
.+++|++|++++|. +.. .+...+..+++|+.|++++|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 45566666666654 110 01111233456666666655
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=2.1e-14 Score=115.13 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=85.6
Q ss_pred ceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCC
Q 042573 135 IYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN 214 (388)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 214 (388)
+.+++++|.++. +|..+ .++|+.|+|++|.+++..+..|..+++|+.|++++|++++..+..+..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 567777777764 44333 267888888888888777777888888888888888888766777788888888888888
Q ss_pred cCccccchhhhcCCCCcEEEcccccCcccCC
Q 042573 215 NLSGRIPKYFENFLFLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 215 ~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~ 245 (388)
++++..+..|..+++|+.|++++|+++|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 8887777778888889999999998888876
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=3.9e-14 Score=113.48 Aligned_cols=108 Identities=24% Similarity=0.281 Sum_probs=91.2
Q ss_pred cccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 12 RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 12 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
..+++++++|.++. +|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 47889999999885 55544 3789999999999987778889999999999999999987777778899999999999
Q ss_pred CCcccccCCcCCCCCCCCCEEeCCCCcCCCc
Q 042573 92 ENMLEGSIPSSLGKCQNLILLDLSKNNLSGT 122 (388)
Q Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 122 (388)
+|.+++..+..|..+++|+.|++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999877677788999999999999988743
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=4.5e-17 Score=134.41 Aligned_cols=133 Identities=20% Similarity=0.269 Sum_probs=66.5
Q ss_pred CCCCCCEEECcCCccccCCCc------cccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCcccccCCcCCCCC
Q 042573 33 NLVNLELLDLGDNQFTGRIPG------SIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKC 106 (388)
Q Consensus 33 ~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 106 (388)
....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 334444445555444444333 45555555555555555543 33 4555555555555555555 334444444
Q ss_pred CCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCC-cccccCCCCCEEEcccCccccc
Q 042573 107 QNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLP-SNFGILKNLGVISLSENKLSGE 171 (388)
Q Consensus 107 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 171 (388)
++|+.|++++|++++ ++ .+..++.+ +.|++++|.+++..+ ..+..+++|+.|++++|.+.+.
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L-~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNL-RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHS-SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCC-CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555555555555543 22 34444444 555555555543211 2345555566666666655443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=9.9e-17 Score=132.33 Aligned_cols=132 Identities=20% Similarity=0.247 Sum_probs=74.8
Q ss_pred CCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccc
Q 042573 102 SLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIR 181 (388)
Q Consensus 102 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 181 (388)
.+..+++|++|++++|.+.+ +| .+..++.+ ++|++++|.++ .+|..+..+++|+.|++++|.+++. | .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L-~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCC
Confidence 44444455555555554442 33 44444444 45555555554 3344444555666666666666642 2 4556666
Q ss_pred cceecccCccccccCC-ccCcCCCCCCEEECCCCcCccccch----------hhhcCCCCcEEEcccccCc
Q 042573 182 LEQLVMNGNFFRGNIP-SSFSSLRGIEKLDLSRNNLSGRIPK----------YFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 182 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~l~~l~~L~~l~l~~n~~~ 241 (388)
|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|| +++++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777777776654322 3456667777777777777655443 366777888776 55554
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=5.6e-14 Score=112.98 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=84.1
Q ss_pred ceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCC
Q 042573 135 IYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRN 214 (388)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 214 (388)
+.+++++|.++ .+|..+. ++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+..+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777776 4444332 67888888888888777777888888888888888888666666778888888888888
Q ss_pred cCccccchhhhcCCCCcEEEcccccCcccCC
Q 042573 215 NLSGRIPKYFENFLFLQKLNLSFNHFEGEVP 245 (388)
Q Consensus 215 ~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~ 245 (388)
++++..+..+..+++|+.|++++|++.|.++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8887766678888888888888888888765
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=9e-14 Score=111.77 Aligned_cols=105 Identities=25% Similarity=0.343 Sum_probs=85.7
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
-+.+++++|.++ .+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 577888888887 4555443 7888999999988877788888888899999999888876666678888899999998
Q ss_pred CcccccCCcCCCCCCCCCEEeCCCCcCC
Q 042573 93 NMLEGSIPSSLGKCQNLILLDLSKNNLS 120 (388)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 120 (388)
|.++...+..|..+++|+.|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8888666666888888888888888876
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=1.9e-12 Score=116.32 Aligned_cols=92 Identities=23% Similarity=0.161 Sum_probs=44.7
Q ss_pred cccCCCCCEEEccc-CcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCC
Q 042573 152 FGILKNLGVISLSE-NKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFL 230 (388)
Q Consensus 152 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 230 (388)
+..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44444455555543 455444444444555555555555555544444445555555555555555544443333333 5
Q ss_pred cEEEcccccCcccC
Q 042573 231 QKLNLSFNHFEGEV 244 (388)
Q Consensus 231 ~~l~l~~n~~~~~~ 244 (388)
+.|++++|++.|.|
T Consensus 106 ~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 106 QELVLSGNPLHCSC 119 (347)
T ss_dssp CEEECCSSCCCCCG
T ss_pred eEEEeeCCCccCCC
Confidence 55555555555444
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=4e-12 Score=114.24 Aligned_cols=106 Identities=20% Similarity=0.132 Sum_probs=90.5
Q ss_pred ccEEEeecC-ceeecCcccccCCCCCCEEECcC-CccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEec
Q 042573 13 LGKLSVAEN-QLFGNIPSGLTNLVNLELLDLGD-NQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDF 90 (388)
Q Consensus 13 L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 90 (388)
-..++++++ .++. +|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|
T Consensus 10 ~~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 10 SSGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SSCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CCEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 346788887 7884 666 99999999999996 9998777788999999999999999999888888999999999999
Q ss_pred cCCcccccCCcCCCCCCCCCEEeCCCCcCCC
Q 042573 91 AENMLEGSIPSSLGKCQNLILLDLSKNNLSG 121 (388)
Q Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 121 (388)
++|.+++..+..|..++ |+.|+|.+|.+..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999976666676665 9999999998864
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=2.2e-14 Score=129.67 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=79.2
Q ss_pred CCCCEEEcccCcccccCCcCc-cCCCCCCEEeccCCcccccCCcCC-----CCCCCCCEEeCCCCcCCCc----CChhhh
Q 042573 59 QKLQRLWLKGNKFWGEIPSSI-GNLTSLAILDFAENMLEGSIPSSL-----GKCQNLILLDLSKNNLSGT----IPTEVI 128 (388)
Q Consensus 59 ~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~ 128 (388)
++|++|+|++|.+.......+ ..+.+|++|+|++|.++......+ ...++|+.|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555555432211111 223455556666555543211111 2345566666666655421 222234
Q ss_pred ccCcccceEEccCccCcCC----CCcccccCCCCCEEEcccCcccccC----ChhhccccccceecccCccccccCCccC
Q 042573 129 GLPSFSIYLNLSQNQLNGP----LPSNFGILKNLGVISLSENKLSGEI----PSSLGSCIRLEQLVMNGNFFRGNIPSSF 200 (388)
Q Consensus 129 ~~~~l~~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 200 (388)
..+.+ ++|++++|.+++. +...+...++|+.|+|++|.+++.. ...+...++|++|++++|.+++.....+
T Consensus 181 ~~~~L-~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 181 GNTSV-THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp TCSSC-CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCCCc-CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 45555 6666666665532 2334556667888888888776432 2334455778888888887765433322
Q ss_pred cCC---C--CCCEEE--CCCCcCc
Q 042573 201 SSL---R--GIEKLD--LSRNNLS 217 (388)
Q Consensus 201 ~~l---~--~L~~L~--l~~n~l~ 217 (388)
..+ . .|+.+. +..+.+.
T Consensus 260 ~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 260 RDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHCC------CEEECCCC----CH
T ss_pred HHHhcCCCccchhhHhhhcCCccC
Confidence 211 2 266666 6666655
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=1.4e-13 Score=124.27 Aligned_cols=161 Identities=18% Similarity=0.189 Sum_probs=106.8
Q ss_pred CCCCCEEeccCCcccccCCcC----CC-CCCCCCEEeCCCCcCCCcCChhhh-ccCcccceEEccCccCcCCCCccc---
Q 042573 82 LTSLAILDFAENMLEGSIPSS----LG-KCQNLILLDLSKNNLSGTIPTEVI-GLPSFSIYLNLSQNQLNGPLPSNF--- 152 (388)
Q Consensus 82 l~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~~L~l~~n~~~~~~~~~~--- 152 (388)
+++|++|++++|.++...... +. ..++|+.|+|++|.++......+. .+..+ +.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L-~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA-RKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTE-EEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhc-cHhhcCCCCCCHHHHHHHHHH
Confidence 456777777777766432222 22 235778888888777543222222 34455 788888887764433333
Q ss_pred --ccCCCCCEEEcccCccccc----CChhhccccccceecccCcccccc----CCccCcCCCCCCEEECCCCcCcccc--
Q 042573 153 --GILKNLGVISLSENKLSGE----IPSSLGSCIRLEQLVMNGNFFRGN----IPSSFSSLRGIEKLDLSRNNLSGRI-- 220 (388)
Q Consensus 153 --~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-- 220 (388)
...++|+.|+|++|.++.. +...+...++|++|+|++|.+.+. +...+...++|+.|+|++|.+++..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2356789999999988642 233346678899999999988753 2455566778999999999998643
Q ss_pred --chhhhcCCCCcEEEcccccCccc
Q 042573 221 --PKYFENFLFLQKLNLSFNHFEGE 243 (388)
Q Consensus 221 --~~~l~~l~~L~~l~l~~n~~~~~ 243 (388)
...+...++|+.|++++|+++..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHH
Confidence 34455678899999999988743
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.26 E-value=2.8e-10 Score=103.96 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=63.9
Q ss_pred hhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCc---cccCCCccccCCCCCCEEEcccCcccccCCcCccCC
Q 042573 6 VGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQ---FTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNL 82 (388)
Q Consensus 6 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 82 (388)
|.++...|+.+.+..+ ++.+...+|.++.+|+.+.+..+. ++.+-..+|.++.+|+.+.+..+ ++.+...+|..+
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 3344334888888754 666777888888888888887653 44444566777777777666544 343445566666
Q ss_pred CCCCEEeccCCcccccCCcCCCCCCCCCEEeC
Q 042573 83 TSLAILDFAENMLEGSIPSSLGKCQNLILLDL 114 (388)
Q Consensus 83 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 114 (388)
.+|+.+.+..+. .......|..+..|+.+.+
T Consensus 137 ~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~ 167 (394)
T 4gt6_A 137 EELDTVTIPEGV-TSVADGMFSYCYSLHTVTL 167 (394)
T ss_dssp TTCCEEECCTTC-CEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccee-eeecccceecccccccccc
Confidence 666666665332 2223344444444544444
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.22 E-value=3.3e-10 Score=103.52 Aligned_cols=201 Identities=15% Similarity=0.103 Sum_probs=113.6
Q ss_pred CcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCCccc----------
Q 042573 27 IPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLE---------- 96 (388)
Q Consensus 27 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~---------- 96 (388)
...+|.++++|+.+.+.++... +....|.++.+|+.+.+..+ +..+...+|.++..|+.+.+..+...
T Consensus 154 ~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~ 231 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTG 231 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCC
T ss_pred chhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCC
Confidence 3456677777777777654322 44556666777777766654 33344556666666666655443221
Q ss_pred -----------ccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEccc
Q 042573 97 -----------GSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSE 165 (388)
Q Consensus 97 -----------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 165 (388)
......|..+..|+.+.+..+... .....+..+..+ +.+....+.+ ....|..+.+|+.+.+..
T Consensus 232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l-~~~~~~~~~i---~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGL-KKVIYGSVIV---PEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTC-CEEEECSSEE---CTTTTTTCTTCCEEEECT
T ss_pred CceEEECCCceecccccccccccceeEEcCCCcce-eecccccccccc-ceeccCceee---cccccccccccccccccc
Confidence 112234444555555555443222 333334444444 3444333221 223456666777777765
Q ss_pred CcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEccc
Q 042573 166 NKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSF 237 (388)
Q Consensus 166 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~ 237 (388)
+ ++......|.++.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+++++..
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 4 44344556777777777777644 55455667777777777777665 5555666777777777777654
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.18 E-value=5.3e-10 Score=102.12 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=66.6
Q ss_pred hhhhccccccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCc--------------
Q 042573 5 AVGNLSTRLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNK-------------- 70 (388)
Q Consensus 5 ~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-------------- 70 (388)
+|.++.+ |+++.|.. .++.+...+|.++.+|+.+++..+ ++.+-...|.++.+|+.+.+..+-
T Consensus 66 AF~~c~~-L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRK-VTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTT-EEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred HhhCCCC-ceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 3445655 88888864 466666778888888888888754 443445567677766666554321
Q ss_pred -------ccccCCcCccCCCCCCEEeccCCcccccCCcCCCCCCCCCEEeCCCC
Q 042573 71 -------FWGEIPSSIGNLTSLAILDFAENMLEGSIPSSLGKCQNLILLDLSKN 117 (388)
Q Consensus 71 -------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 117 (388)
.......+|.++.+|+.+.+..+. .......|.++.+|+.+++..+
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence 111223456666777777775443 2244456666666766666543
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.14 E-value=1e-09 Score=100.25 Aligned_cols=229 Identities=11% Similarity=0.131 Sum_probs=156.7
Q ss_pred hhhhccccccEEEeecCc---eeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccC
Q 042573 5 AVGNLSTRLGKLSVAENQ---LFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGN 81 (388)
Q Consensus 5 ~~~~l~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 81 (388)
+|.++.+ |+.+.+..+. ++.+...+|.++.+|+.+.+..+ +..+....|.++.+|+.+.+..+ +..+...+|..
T Consensus 82 AF~~C~~-L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~ 158 (394)
T 4gt6_A 82 AFYNCTS-LKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSY 158 (394)
T ss_dssp TTTTCTT-CCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred HhhCCcc-CceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceec
Confidence 4556765 9999998763 66666778888888888887665 44355567778888888887644 33344556666
Q ss_pred CCCCCEEeccCCcc---------------------cccCCcCCCCCCCCCEEeCCCCc----------------------
Q 042573 82 LTSLAILDFAENML---------------------EGSIPSSLGKCQNLILLDLSKNN---------------------- 118 (388)
Q Consensus 82 l~~L~~L~l~~n~l---------------------~~~~~~~~~~l~~L~~L~l~~n~---------------------- 118 (388)
+.+|+.+.+..+-- .......|..+.++.........
T Consensus 159 c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (394)
T 4gt6_A 159 CYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY 238 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC
T ss_pred ccccccccccceeeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeeccccccccccccc
Confidence 66666666654311 11122334444455444332211
Q ss_pred --------------CCCcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccce
Q 042573 119 --------------LSGTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQ 184 (388)
Q Consensus 119 --------------~~~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 184 (388)
+......+|..+..+ +.+.+..+... ....+|.++++|+.+.+.. .++......|.++.+|+.
T Consensus 239 ~~~~~~~~~~ip~~v~~i~~~aF~~c~~L-~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~ 315 (394)
T 4gt6_A 239 PSQREDPAFKIPNGVARIETHAFDSCAYL-ASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKS 315 (394)
T ss_dssp CTTCCCSEEECCTTEEEECTTTTTTCSSC-CEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCE
T ss_pred ccccccceEEcCCcceEcccceeeecccc-cEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCE
Confidence 111112345666777 78888765443 5567889999999999974 455566778999999999
Q ss_pred ecccCccccccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCc
Q 042573 185 LVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 185 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~ 241 (388)
+.+..+ ++.+...+|.++.+|+.+.+..+ ++.....+|..+.+|+.+++.++...
T Consensus 316 i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 316 IDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred EEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 999875 66567789999999999999765 77677889999999999999887543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=3.6e-11 Score=107.69 Aligned_cols=84 Identities=12% Similarity=0.210 Sum_probs=56.5
Q ss_pred cCCCCCEEEcccCcccccCChhhc---cccccceecccCcccccc----CCccCcCCCCCCEEECCCCcCccccchhhhc
Q 042573 154 ILKNLGVISLSENKLSGEIPSSLG---SCIRLEQLVMNGNFFRGN----IPSSFSSLRGIEKLDLSRNNLSGRIPKYFEN 226 (388)
Q Consensus 154 ~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 226 (388)
.+++|+.|+|.+|.+.+.....+. .+++|+.|+|+.|.+.+. ++..+..+++|+.|++++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 467899999998888643332232 467888888888887754 2333345688888888888887554444443
Q ss_pred -CCCCcEEEccccc
Q 042573 227 -FLFLQKLNLSFNH 239 (388)
Q Consensus 227 -l~~L~~l~l~~n~ 239 (388)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3557777665
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=6e-11 Score=106.26 Aligned_cols=83 Identities=19% Similarity=0.354 Sum_probs=42.3
Q ss_pred cCcccceEEccCccCcCCCCccc---ccCCCCCEEEcccCccccc----CChhhccccccceecccCccccccCCccCcC
Q 042573 130 LPSFSIYLNLSQNQLNGPLPSNF---GILKNLGVISLSENKLSGE----IPSSLGSCIRLEQLVMNGNFFRGNIPSSFSS 202 (388)
Q Consensus 130 ~~~l~~~L~l~~n~~~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 202 (388)
++.| +.|++.+|.+.+.....+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.+++.....+..
T Consensus 251 ~p~L-r~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 251 FPNL-KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp CTTC-CEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCc-CEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 3444 555555555442211111 1345677777777766542 2222344567777777777665443322221
Q ss_pred -CCCCCEEECCCCc
Q 042573 203 -LRGIEKLDLSRNN 215 (388)
Q Consensus 203 -l~~L~~L~l~~n~ 215 (388)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 1 2456776665
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.94 E-value=6.3e-08 Score=87.85 Aligned_cols=217 Identities=15% Similarity=0.115 Sum_probs=119.6
Q ss_pred cccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEecc
Q 042573 12 RLGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFA 91 (388)
Q Consensus 12 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 91 (388)
+|+++.+. ..++.+...+|.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ +..+...+|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 48888886 3466677778888888888888654 554555667666 4666655433 33333344443 256666554
Q ss_pred CCc---------------------ccccCCcCCCCCCCCCEEeCCCCcCC------------------------------
Q 042573 92 ENM---------------------LEGSIPSSLGKCQNLILLDLSKNNLS------------------------------ 120 (388)
Q Consensus 92 ~n~---------------------l~~~~~~~~~~l~~L~~L~l~~n~~~------------------------------ 120 (388)
.+- ++......|..+.+++.+.+..+...
T Consensus 122 ~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
T 4h09_A 122 GATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTI 201 (379)
T ss_dssp TTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEEC
T ss_pred Cccccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccccccccc
Confidence 321 11112234455555555544322110
Q ss_pred -----CcCChhhhccCcccceEEccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCcccccc
Q 042573 121 -----GTIPTEVIGLPSFSIYLNLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGN 195 (388)
Q Consensus 121 -----~~~~~~~~~~~~l~~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 195 (388)
......+.....+ +.+.+..+ +......+|.++..|+.+.+..+ ++......|..+.+|+.+.+..+ +...
T Consensus 202 ~~~~~~i~~~~f~~~~~l-~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i 277 (379)
T 4h09_A 202 PSTVKTVTAYGFSYGKNL-KKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTV 277 (379)
T ss_dssp CTTCCEECTTTTTTCSSC-SEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEE
T ss_pred ccceeEEeeccccccccc-ceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceec
Confidence 0111122333344 45555433 23234455666677777777654 33344455666666776666543 3334
Q ss_pred CCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEccc
Q 042573 196 IPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSF 237 (388)
Q Consensus 196 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~ 237 (388)
....|.++.+|+.+.+.++.++.+...+|..+.+|+.+.+..
T Consensus 278 ~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred cccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 455666667777777766666655666677777777776643
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.74 E-value=3.8e-07 Score=82.67 Aligned_cols=216 Identities=10% Similarity=0.039 Sum_probs=144.9
Q ss_pred ccEEEeecCceeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccC
Q 042573 13 LGKLSVAENQLFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAE 92 (388)
Q Consensus 13 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 92 (388)
|+.+.+..+ ++.+...+|.+. +|+.+.+..+-.. +-...|.++ +|+.+.+..+ ++......|..+.+++.+.+..
T Consensus 93 l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 93 LQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CCEEEECTT-CCEECTTTTTTC-CCSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred CceEECCce-eeEeccceeccC-CcccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence 777777543 454555667654 6888888765322 334445443 4555544433 3334444555555555554432
Q ss_pred Ccc-----------------------------------cccCCcCCCCCCCCCEEeCCCCcCCCcCChhhhccCcccceE
Q 042573 93 NML-----------------------------------EGSIPSSLGKCQNLILLDLSKNNLSGTIPTEVIGLPSFSIYL 137 (388)
Q Consensus 93 n~l-----------------------------------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L 137 (388)
+.. .......+..+.+|+.+.+..+ +.......+..+..+ +.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L-~~i 245 (379)
T 4h09_A 168 NNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKAL-DEI 245 (379)
T ss_dssp TCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSC-CEE
T ss_pred ccceeecccceecccccceeccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccc-eEE
Confidence 211 1122345667788888888654 443455667778888 888
Q ss_pred EccCccCcCCCCcccccCCCCCEEEcccCcccccCChhhccccccceecccCccccccCCccCcCCCCCCEEECCCCcCc
Q 042573 138 NLSQNQLNGPLPSNFGILKNLGVISLSENKLSGEIPSSLGSCIRLEQLVMNGNFFRGNIPSSFSSLRGIEKLDLSRNNLS 217 (388)
Q Consensus 138 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 217 (388)
.+..+ ++.....+|.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.++.....+|.++.+|+.+.+.++ ++
T Consensus 246 ~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~ 322 (379)
T 4h09_A 246 AIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK 322 (379)
T ss_dssp EECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred EcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence 88765 55566678888999999999764 44455667889999999999998888777889999999999999765 66
Q ss_pred cccchhhhcCCCCcEEEcccc
Q 042573 218 GRIPKYFENFLFLQKLNLSFN 238 (388)
Q Consensus 218 ~~~~~~l~~l~~L~~l~l~~n 238 (388)
.+...+|..+.+|+++.+..+
T Consensus 323 ~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 323 TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECTTTTTTCTTCCCCCCCTT
T ss_pred EEHHHHhhCCCCCCEEEECCc
Confidence 667788999999998887543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.59 E-value=5.1e-09 Score=89.00 Aligned_cols=63 Identities=24% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCCCCEEEcccCcccc--cCCcCccCCCCCCEEeccCCccccc-CCcCCCCCCCCCEEeCCCCcCCC
Q 042573 58 LQKLQRLWLKGNKFWG--EIPSSIGNLTSLAILDFAENMLEGS-IPSSLGKCQNLILLDLSKNNLSG 121 (388)
Q Consensus 58 l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~ 121 (388)
+++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ....+..+ +|+.|+|++|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 4445555555555443 2223334455555555555555432 01112222 55555555555544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=2.9e-09 Score=86.17 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=69.3
Q ss_pred cccccCCCCCCEEECcCC-ccccC----CCccccCCCCCCEEEcccCccccc----CCcCccCCCCCCEEeccCCccccc
Q 042573 28 PSGLTNLVNLELLDLGDN-QFTGR----IPGSIGDLQKLQRLWLKGNKFWGE----IPSSIGNLTSLAILDFAENMLEGS 98 (388)
Q Consensus 28 ~~~~~~l~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~ 98 (388)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344556677777777776 65421 223445566777777777766432 223344556777777777776632
Q ss_pred ----CCcCCCCCCCCCEEeC--CCCcCCCcC----ChhhhccCcccceEEccCccCc
Q 042573 99 ----IPSSLGKCQNLILLDL--SKNNLSGTI----PTEVIGLPSFSIYLNLSQNQLN 145 (388)
Q Consensus 99 ----~~~~~~~l~~L~~L~l--~~n~~~~~~----~~~~~~~~~l~~~L~l~~n~~~ 145 (388)
+...+...++|++|+| ++|.+.... ...+...+.+ +.|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L-~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTL-LKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSC-CEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCc-CEEeccCCCCC
Confidence 3445566667777777 667765332 2233444566 77777777664
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=5.6e-08 Score=82.60 Aligned_cols=64 Identities=25% Similarity=0.327 Sum_probs=28.8
Q ss_pred cCCCCCEEEcccCcccc--cCChhhccccccceecccCcccccc-CCccCcCCCCCCEEECCCCcCcc
Q 042573 154 ILKNLGVISLSENKLSG--EIPSSLGSCIRLEQLVMNGNFFRGN-IPSSFSSLRGIEKLDLSRNNLSG 218 (388)
Q Consensus 154 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~ 218 (388)
++++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ....+..+ .|++|+|++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 34555555555555553 2223344455555555555555433 01111122 45555555555543
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=9e-08 Score=77.31 Aligned_cols=88 Identities=16% Similarity=0.235 Sum_probs=51.6
Q ss_pred cCCCCCEEEcccCccccc----CChhhccccccceecccCcccccc----CCccCcCCCCCCEEEC--CCCcCcccc---
Q 042573 154 ILKNLGVISLSENKLSGE----IPSSLGSCIRLEQLVMNGNFFRGN----IPSSFSSLRGIEKLDL--SRNNLSGRI--- 220 (388)
Q Consensus 154 ~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l--~~n~l~~~~--- 220 (388)
..++|++|+|++|.+... +...+...++|++|+|++|.+.+. +...+...++|++|+| ++|.+....
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 334566666666665422 122233345566666666666543 2344555567888888 677776542
Q ss_pred -chhhhcCCCCcEEEcccccCc
Q 042573 221 -PKYFENFLFLQKLNLSFNHFE 241 (388)
Q Consensus 221 -~~~l~~l~~L~~l~l~~n~~~ 241 (388)
...+...++|++|++++|.+.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCcCEEeccCCCCC
Confidence 334555677888888877764
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=1.1e-07 Score=75.09 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=40.0
Q ss_pred CCCEEECcCCccccCCCccccCCCCCCEEEcccCc-ccccCCcCccCC----CCCCEEeccCCc-ccccCCcCCCCCCCC
Q 042573 36 NLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKGNK-FWGEIPSSIGNL----TSLAILDFAENM-LEGSIPSSLGKCQNL 109 (388)
Q Consensus 36 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~~L 109 (388)
.|+.||+++|.++..--..+.++++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555443222334455555555555553 332211223332 246666666653 443222334456666
Q ss_pred CEEeCCCCc
Q 042573 110 ILLDLSKNN 118 (388)
Q Consensus 110 ~~L~l~~n~ 118 (388)
+.|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666653
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=3.5e-07 Score=72.13 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=46.5
Q ss_pred ceEEccCccCcCCCCcccccCCCCCEEEcccCc-ccccCChhhccc----cccceecccCcc-ccccCCccCcCCCCCCE
Q 042573 135 IYLNLSQNQLNGPLPSNFGILKNLGVISLSENK-LSGEIPSSLGSC----IRLEQLVMNGNF-FRGNIPSSFSSLRGIEK 208 (388)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 208 (388)
+.|+++++.++...-..+..+++|+.|+|++|. +++.--..+..+ ++|++|++++|. +++..-..+..+++|++
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 677777776665444455666777777777764 543333334332 356666666653 55443344455566666
Q ss_pred EECCCCc
Q 042573 209 LDLSRNN 215 (388)
Q Consensus 209 L~l~~n~ 215 (388)
|+++++.
T Consensus 144 L~L~~c~ 150 (176)
T 3e4g_A 144 LFLSDLP 150 (176)
T ss_dssp EEEESCT
T ss_pred EECCCCC
Confidence 6666654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.87 E-value=2.8e-05 Score=58.38 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=50.7
Q ss_pred ceecccCcccc-ccCCccCcCCCCCCEEECCCCcCccccchhhhcCCCCcEEEcccccCcccCCC
Q 042573 183 EQLVMNGNFFR-GNIPSSFSSLRGIEKLDLSRNNLSGRIPKYFENFLFLQKLNLSFNHFEGEVPI 246 (388)
Q Consensus 183 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~ 246 (388)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|++++|+|.|+|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 36777777775 24555443 5799999999999988888999999999999999999998874
No 162
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=97.73 E-value=5.5e-05 Score=66.07 Aligned_cols=49 Identities=37% Similarity=0.540 Sum_probs=42.4
Q ss_pred cccccCHHHHHHhhcCCCcC------ceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 330 SVLRVSYENLFKATDGFSLE------NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 330 ~~~~~~~~~l~~at~~f~~~------~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
....+++.++..++++|+.. +.||+|+||.||+|+..+. .||||++...
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~----~vavK~~~~~ 65 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNT----TVAVKKLAAM 65 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESSSC----EEEEEEECCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEECCc----eEEEEEEecc
Confidence 34678999999999999988 8899999999999998433 7999999754
No 163
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=97.71 E-value=2.6e-05 Score=68.81 Aligned_cols=53 Identities=45% Similarity=0.653 Sum_probs=44.4
Q ss_pred hcccccCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCCC
Q 042573 329 ASVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHG 384 (388)
Q Consensus 329 ~~~~~~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~ 384 (388)
.....++++++..++++|...+.||+|+||.||+|+..+| . .||||++.....
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~-~--~vavK~~~~~~~ 67 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADG-T--LVAVKRLKEERT 67 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSS-C--CEEEEECCC---
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCC-C--EEEEEEeccccC
Confidence 3456789999999999999999999999999999998666 3 799999976543
No 164
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=97.70 E-value=2.1e-05 Score=68.63 Aligned_cols=34 Identities=35% Similarity=0.553 Sum_probs=25.3
Q ss_pred ceeecCCCceEEEEEeCC---CCceeEEEEEEeecCC
Q 042573 350 NLIGAGSFGSVYKGILTH---DDHETLVAVKVLNLEH 383 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~---g~~~~~vavK~l~~~~ 383 (388)
+.||+|+||.||+|++.+ +.+++.||||+++...
T Consensus 32 ~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~ 68 (308)
T 4gt4_A 32 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA 68 (308)
T ss_dssp EEEEECSSCEEEEEEEC-------CEEEEEEECCC-C
T ss_pred eEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECccc
Confidence 679999999999999842 2244589999997654
No 165
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=97.61 E-value=3e-05 Score=68.41 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=28.3
Q ss_pred CCCcCceeecCCCceEEEEEeCC---CCceeEEEEEEeecC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTH---DDHETLVAVKVLNLE 382 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~---g~~~~~vavK~l~~~ 382 (388)
+|.-.+.||+|+||.||+|++.+ ..+++.||||+++..
T Consensus 42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~ 82 (329)
T 4aoj_A 42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA 82 (329)
T ss_dssp GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC
T ss_pred HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC
Confidence 34445789999999999999853 114568999999764
No 166
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=97.35 E-value=6.9e-05 Score=68.91 Aligned_cols=46 Identities=26% Similarity=0.438 Sum_probs=38.4
Q ss_pred cCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 334 VSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 334 ~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
..+.++..++++|...+.||+|+||.||+|+..+. |..||||++++
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~--~~~vAvK~~~~ 109 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNA--DKVFAMKILNK 109 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEEEH
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCC--CcEEEEEEEEH
Confidence 45667777888999999999999999999999654 24899999964
No 167
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=97.31 E-value=0.00012 Score=63.61 Aligned_cols=35 Identities=46% Similarity=0.663 Sum_probs=27.3
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++|.-.+.||+|+||+||+|++.+ .||||.++...
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~-----~vAvK~~~~~~ 70 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG-----DVAVKILKVVD 70 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS-----EEEEEECCCSS
T ss_pred HHeEEeeEEeeCCCcEEEEEEECC-----cEEEEEEEecC
Confidence 344556789999999999999853 48999997543
No 168
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=97.27 E-value=9.4e-05 Score=65.09 Aligned_cols=48 Identities=44% Similarity=0.612 Sum_probs=39.5
Q ss_pred ccCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 333 RVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 333 ~~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++.+.++..++++|.....||+|+||.||+|+..+| . .||||++....
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~-~--~vavK~~~~~~ 75 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDG-A--KVALKRRTPES 75 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTC-C--EEEEEECCSCC
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCC-C--EEEEEEecccC
Confidence 456667788899999999999999999999998665 3 89999987653
No 169
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=97.17 E-value=0.00033 Score=61.56 Aligned_cols=50 Identities=28% Similarity=0.200 Sum_probs=38.2
Q ss_pred ccccCHHHHHHhhcC----------CCcCceeecCCCceEEEEEeC-CCCceeEEEEEEeecCC
Q 042573 331 VLRVSYENLFKATDG----------FSLENLIGAGSFGSVYKGILT-HDDHETLVAVKVLNLEH 383 (388)
Q Consensus 331 ~~~~~~~~l~~at~~----------f~~~~~lg~g~fg~vy~g~l~-~g~~~~~vavK~l~~~~ 383 (388)
...++++++.++++. |.....||+|+||.||+|+.. +| . .||||++....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g-~--~vavK~~~~~~ 82 (321)
T 2c30_A 22 SGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSG-R--QVAVKMMDLRK 82 (321)
T ss_dssp ---CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTC-C--EEEEEEEETTT
T ss_pred CCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCC-c--EEEEEEEeccc
Confidence 356899999999876 344468999999999999985 34 3 89999997654
No 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.17 E-value=5.8e-05 Score=60.61 Aligned_cols=112 Identities=12% Similarity=0.167 Sum_probs=60.1
Q ss_pred ccCCCCCCEEECcCC-cccc----CCCccccCCCCCCEEEcccCccccc----CCcCccCCCCCCEEeccCCccccc---
Q 042573 31 LTNLVNLELLDLGDN-QFTG----RIPGSIGDLQKLQRLWLKGNKFWGE----IPSSIGNLTSLAILDFAENMLEGS--- 98 (388)
Q Consensus 31 ~~~l~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~--- 98 (388)
+.+-+.|+.|+|+++ .|.. .+...+..-..|+.|+|++|.+... +...+..-..|++|+|+.|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345566777777664 5431 1223344455677777777766532 223344556777777777776632
Q ss_pred -CCcCCCCCCCCCEEeCCCCc---CCCc----CChhhhccCcccceEEccCcc
Q 042573 99 -IPSSLGKCQNLILLDLSKNN---LSGT----IPTEVIGLPSFSIYLNLSQNQ 143 (388)
Q Consensus 99 -~~~~~~~l~~L~~L~l~~n~---~~~~----~~~~~~~~~~l~~~L~l~~n~ 143 (388)
+...+..-..|+.|+|+++. +... +...+..-+.+ +.|+++.|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL-~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESL-LRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSC-CEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCc-CeEeccCCC
Confidence 23445555667777776542 2211 22233444555 667766554
No 171
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=97.12 E-value=0.00025 Score=63.12 Aligned_cols=47 Identities=26% Similarity=0.222 Sum_probs=33.7
Q ss_pred HHHHhhcCCCcCceeecCCCceEEEEEeCCC---CceeEEEEEEeecCCC
Q 042573 338 NLFKATDGFSLENLIGAGSFGSVYKGILTHD---DHETLVAVKVLNLEHG 384 (388)
Q Consensus 338 ~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g---~~~~~vavK~l~~~~~ 384 (388)
+.+...++|.-.+.||+|+||.||+|+..+. ..++.||||+++....
T Consensus 58 ~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~ 107 (353)
T 4ase_A 58 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT 107 (353)
T ss_dssp HHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCC
T ss_pred ccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccC
Confidence 3334445666668899999999999997431 1345899999986543
No 172
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=97.04 E-value=0.00044 Score=61.80 Aligned_cols=40 Identities=33% Similarity=0.456 Sum_probs=31.3
Q ss_pred hhcCCCcCceeecCCCceEEEEEe--CCCCceeEEEEEEeecC
Q 042573 342 ATDGFSLENLIGAGSFGSVYKGIL--THDDHETLVAVKVLNLE 382 (388)
Q Consensus 342 at~~f~~~~~lg~g~fg~vy~g~l--~~g~~~~~vavK~l~~~ 382 (388)
-.+.|.-.+.||+|+||.||+|+- ..+ .+..||||++...
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~-~~~~vAiK~i~~~ 60 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVG-PEEKIALKHLIPT 60 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTS-CEEEEEEEEECTT
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCC-CCCEEEEEEEccc
Confidence 346677788999999999999974 333 4568999998654
No 173
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.94 E-value=0.0012 Score=49.25 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=20.6
Q ss_pred CCCEEEcccCcccccCCcCccCCCCCCEEeccCCccc
Q 042573 60 KLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAENMLE 96 (388)
Q Consensus 60 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 96 (388)
+|++|+|++|.++...+..|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555555444445555556666666655543
No 174
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=96.93 E-value=0.00054 Score=60.52 Aligned_cols=37 Identities=32% Similarity=0.313 Sum_probs=28.4
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.|...+.||+|+||.||+|+-.. +|..||||+++...
T Consensus 75 ~y~~~~~iG~G~fG~V~~a~~~~--tg~~vAiK~i~~~~ 111 (346)
T 4fih_A 75 YLDNFIKIGEGSTGIVCIATVRS--SGKLVAVKKMDLRK 111 (346)
T ss_dssp TEEEEEEEEECSSCEEEEEEETT--TCCEEEEEEEEGGG
T ss_pred hcEEeEEeecCcCeEEEEEEECC--CCCEEEEEEEecCc
Confidence 35555679999999999998753 23489999997544
No 175
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=96.92 E-value=0.00068 Score=58.43 Aligned_cols=33 Identities=39% Similarity=0.438 Sum_probs=26.2
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+..||+|+||.||+|+.... +..||||++....
T Consensus 31 ~~~iG~G~fg~Vy~a~~~~~--~~~vAiK~i~~~~ 63 (290)
T 3fpq_A 31 DIEIGRGSFKTVYKGLDTET--TVEVAWCELQDRK 63 (290)
T ss_dssp EEEEEECSSEEEEEEEETTT--CCEEEEEEEEGGG
T ss_pred eeEEecCcCcEEEEEEECCC--CeEEEEEEEchhh
Confidence 35799999999999988543 3489999997543
No 176
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.91 E-value=0.0005 Score=55.13 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=43.1
Q ss_pred CCCCEEEcccCcccccC----ChhhccccccceecccCcccccc----CCccCcCCCCCCEEECCCC---cCccc----c
Q 042573 156 KNLGVISLSENKLSGEI----PSSLGSCIRLEQLVMNGNFFRGN----IPSSFSSLRGIEKLDLSRN---NLSGR----I 220 (388)
Q Consensus 156 ~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n---~l~~~----~ 220 (388)
..|+.|+|++|.+...- ...+..-..|++|+|++|.+.+. +.+.+..-..|++|+|++| .+... +
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 45566666666554221 12222334566666666665533 2233444456777777654 23321 2
Q ss_pred chhhhcCCCCcEEEccccc
Q 042573 221 PKYFENFLFLQKLNLSFNH 239 (388)
Q Consensus 221 ~~~l~~l~~L~~l~l~~n~ 239 (388)
...+..-++|..|+++.|.
T Consensus 150 a~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhCCCcCeEeccCCC
Confidence 3345555667777776443
No 177
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=96.85 E-value=0.0002 Score=62.67 Aligned_cols=37 Identities=32% Similarity=0.385 Sum_probs=29.2
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.... |..||||++...
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~--~~~vavK~~~~~ 93 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKED--GRLYAVKRSMSP 93 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTT--SCEEEEEEESSS
T ss_pred hheeeeheeccCCCeEEEEEEECCC--CeEEEEEEeccc
Confidence 4566678899999999999998632 238999998654
No 178
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=96.81 E-value=0.00094 Score=60.64 Aligned_cols=39 Identities=31% Similarity=0.293 Sum_probs=29.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHG 384 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~ 384 (388)
+.|...+.||+|+||.||+|+-.. +|..||||++.....
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~--tg~~vAiK~i~~~~~ 189 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRS--SGKLVAVKKMDLRKQ 189 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETT--TCCEEEEEEEESTTC
T ss_pred HhcEeeeEeccCcCcEEEEEEECC--CCCEEEEEEEeccch
Confidence 346666789999999999998753 234899999976543
No 179
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=96.76 E-value=0.00053 Score=60.33 Aligned_cols=38 Identities=29% Similarity=0.296 Sum_probs=28.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.|.....||+|+||.||+|+-.. +|..||||+++...
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~--~g~~vAiK~i~~~~ 95 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQ--TGFQCAVKKVRLEV 95 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETT--TCCEEEEEEEETTT
T ss_pred hheEeCcEeccCCCeEEEEEEECC--CCCEEEEEEECHHH
Confidence 345555679999999999998743 23489999998654
No 180
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=96.70 E-value=0.0007 Score=58.74 Aligned_cols=38 Identities=37% Similarity=0.542 Sum_probs=28.8
Q ss_pred CCCcCceeecCCCceEEEEEe-CCCCceeEEEEEEeecC
Q 042573 345 GFSLENLIGAGSFGSVYKGIL-THDDHETLVAVKVLNLE 382 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l-~~g~~~~~vavK~l~~~ 382 (388)
+|.-.+.||+|+||.||+|+- .++.+++.||||.++..
T Consensus 25 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~ 63 (304)
T 3ubd_A 25 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKA 63 (304)
T ss_dssp GEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESE
T ss_pred ccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehH
Confidence 455668899999999999975 33224458999999654
No 181
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=96.68 E-value=0.0014 Score=58.56 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=39.4
Q ss_pred cCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 334 VSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 334 ~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
...+++....+.|...+.||+|+||.||+|+-.+| . .||||++....
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~-~--~vavK~~~~~~ 58 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEG-I--PVAIKRVFNTV 58 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTS-C--EEEEEEECEEC
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCC-C--eEEEEeccccC
Confidence 34578888889999999999999999999988665 3 89999996543
No 182
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=96.68 E-value=0.0018 Score=56.98 Aligned_cols=50 Identities=32% Similarity=0.452 Sum_probs=27.6
Q ss_pred ccCHHHHHHhhcCCCc---------CceeecCCCceEEEEEeCC-CCceeEEEEEEeecC
Q 042573 333 RVSYENLFKATDGFSL---------ENLIGAGSFGSVYKGILTH-DDHETLVAVKVLNLE 382 (388)
Q Consensus 333 ~~~~~~l~~at~~f~~---------~~~lg~g~fg~vy~g~l~~-g~~~~~vavK~l~~~ 382 (388)
..++.+...++..|.. .+.||+|+||.||+|+... |..+..||||+++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~ 88 (325)
T 3kul_A 29 PHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAG 88 (325)
T ss_dssp --------------CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTT
T ss_pred cccccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCC
Confidence 3455666666655544 3789999999999999842 323447999999764
No 183
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=96.66 E-value=0.00096 Score=59.02 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+|...+.||+|+||.||+|+-.. +|..||||+++...
T Consensus 25 ~Y~~~~~lG~G~fg~V~~a~~~~--~~~~vAiK~i~~~~ 61 (350)
T 4b9d_A 25 KYVRLQKIGEGSFGKAILVKSTE--DGRQYVIKEINISR 61 (350)
T ss_dssp CEEEEEEC------CEEEEEETT--TCCEEEEEEEECTT
T ss_pred ceEEeEEEecCCCeEEEEEEECC--CCCEEEEEEEehHH
Confidence 45556789999999999998743 22389999997654
No 184
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=96.57 E-value=0.0015 Score=59.13 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=28.0
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+|...+.||+|+||.||+|+-.. +|..||||+++..
T Consensus 55 ~Y~~~~~lG~G~fG~V~~a~~~~--t~~~vAiK~i~~~ 90 (398)
T 4b99_A 55 EYEIIETIGNGAYGVVSSARRRL--TGQQVAIKKIPNA 90 (398)
T ss_dssp SEEEEEEEEECSSCEEEEEEETT--TCCEEEEEEETTT
T ss_pred CeEEEEEEecccCeEEEEEEECC--CCCEEEEEEECcc
Confidence 45556789999999999998743 2348999999754
No 185
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=96.55 E-value=0.001 Score=57.86 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=28.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|.-.+.||+|+||.||+|+-.. +|..||||.+.+.
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~--~~~~~AiK~i~k~ 68 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELA--TSREYAIKILEKR 68 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETT--TCCEEEEEEEEHH
T ss_pred cccEEEEEEecccCeEEEEEEECC--CCCEEEEEEEEHH
Confidence 356667899999999999998743 2348999999753
No 186
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=96.54 E-value=0.00091 Score=60.95 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=37.4
Q ss_pred cCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 334 VSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 334 ~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
+.+++.....++|...+.||+|+||.||+++.... |..||||++++
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~--~~~vAiK~l~k 96 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQT--GQVYAMKIMNK 96 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTT--CCEEEEEEEEH
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCC--CCEEEEEEEeH
Confidence 45666677788999899999999999999998532 23899999964
No 187
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=96.54 E-value=0.0014 Score=58.36 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=37.6
Q ss_pred cCHHHHHHhhcCCCcCceeecCCCceEEEEEeCC---CCceeEEEEEEeecCC
Q 042573 334 VSYENLFKATDGFSLENLIGAGSFGSVYKGILTH---DDHETLVAVKVLNLEH 383 (388)
Q Consensus 334 ~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~---g~~~~~vavK~l~~~~ 383 (388)
+...+.+...++|...+.||+|+||.||+|+..+ ..++..||||+++...
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~ 64 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA 64 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC
Confidence 4455556667788888999999999999998632 1245689999997643
No 188
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=96.45 E-value=0.0013 Score=59.94 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=36.3
Q ss_pred CHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 335 SYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 335 ~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
.++++....++|...+.||+|+||.||+|+.... |..||||+++.
T Consensus 60 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~--~~~~AiK~~~k 104 (410)
T 3v8s_A 60 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKST--RKVYAMKLLSK 104 (410)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTT--CCEEEEEEEEH
T ss_pred HHHhcccCccccEEEEEEEcCCCEEEEEEEECCC--CcEEEEEEEeh
Confidence 3456666778888889999999999999998653 23899999965
No 189
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=96.36 E-value=0.0012 Score=60.22 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=29.9
Q ss_pred HhhcCCCcCceeecCCCceEEEEEeC-CCCceeEEEEEEeec
Q 042573 341 KATDGFSLENLIGAGSFGSVYKGILT-HDDHETLVAVKVLNL 381 (388)
Q Consensus 341 ~at~~f~~~~~lg~g~fg~vy~g~l~-~g~~~~~vavK~l~~ 381 (388)
..+..|...+.||+|+||.||+|+-. .| + .||||.+..
T Consensus 75 ~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g-~--~vAvK~~~~ 113 (413)
T 3dzo_A 75 ERPRTLVRGTVLGQEDPYAYLEATDQETG-E--SFEVHVPYF 113 (413)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEEEETTTC-C--EEEEEEECC
T ss_pred CCceeEEEecccccCCCEEEEEEEecCCC-C--ceEEEEEec
Confidence 34455666789999999999999964 34 3 899999874
No 190
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=96.33 E-value=0.0023 Score=56.99 Aligned_cols=45 Identities=31% Similarity=0.420 Sum_probs=25.5
Q ss_pred HHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 337 ENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 337 ~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.+.....++|...+.||+|+||.||+|+.... |..||||++....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~ 60 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKST--GMSVAIKKVIQDP 60 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTT--CCEEEEEEEECCT
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCC--CCEEEEEEEecCc
Confidence 44556677888889999999999999998532 2389999986643
No 191
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=96.19 E-value=0.0047 Score=54.44 Aligned_cols=50 Identities=36% Similarity=0.521 Sum_probs=27.6
Q ss_pred cCHHHHHHhhcCCCc---------CceeecCCCceEEEEEeCC--CCceeEEEEEEeecCC
Q 042573 334 VSYENLFKATDGFSL---------ENLIGAGSFGSVYKGILTH--DDHETLVAVKVLNLEH 383 (388)
Q Consensus 334 ~~~~~l~~at~~f~~---------~~~lg~g~fg~vy~g~l~~--g~~~~~vavK~l~~~~ 383 (388)
....+...++..|.. .+.||+|+||.||+|+... +..+..||||+++...
T Consensus 25 ~~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~ 85 (333)
T 1mqb_A 25 AMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY 85 (333)
T ss_dssp -------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC
T ss_pred cccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC
Confidence 344455555555544 4789999999999998843 2234579999997643
No 192
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=96.18 E-value=0.0029 Score=58.51 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=31.9
Q ss_pred HhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 341 KATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 341 ~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
...++|...+.||+|+||.||+|+..++ . .||||+++...
T Consensus 185 i~~~~~~~~~~lG~G~fg~V~~~~~~~~-~--~vavK~~~~~~ 224 (454)
T 1qcf_A 185 IPRESLKLEKKLGAGQFGEVWMATYNKH-T--KVAVKTMKPGS 224 (454)
T ss_dssp CCGGGEEEEEEEECCSSEEEEEEEETTT-E--EEEEEEECTTS
T ss_pred echHHeEEEEEcccCCceEEEEEEECCc-c--EEEEEEecCCC
Confidence 3345566678999999999999999765 4 79999998643
No 193
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=96.16 E-value=0.0048 Score=52.97 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=32.2
Q ss_pred HHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 336 YENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 336 ~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
...+.....-+.-.+.||+|+||.||+|+..+| . .||||.++...
T Consensus 82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g-~--~valK~~~~~~ 126 (282)
T 1zar_A 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKF-G--ECVVKFHKVGH 126 (282)
T ss_dssp HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTT-E--EEEEEEECC--
T ss_pred HHHHHhCCeEEEecCEeccCCCceEEEEEeCCC-C--EEEEEEEECCC
Confidence 344444444555568899999999999999545 3 89999997543
No 194
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=96.15 E-value=0.003 Score=57.13 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=30.7
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++|...+.||+|+||.||+|+..+. +..||||.+++..
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~~~--~~~~AvK~~~k~~ 89 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLKKT--DRIYAMRVVKKEL 89 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEEEGGG
T ss_pred hHcEEEEEEeeCCCeEEEEEEECCC--CCEEEEEEEEhhh
Confidence 4566678999999999999998654 3489999998653
No 195
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=96.13 E-value=0.0017 Score=57.95 Aligned_cols=50 Identities=22% Similarity=0.354 Sum_probs=39.0
Q ss_pred cccccCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 330 SVLRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 330 ~~~~~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
....+++++.....+.|...+.||+|+||.||+|+.... |..||||.++.
T Consensus 21 ~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vavK~~~~ 70 (360)
T 3llt_A 21 EIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDN--KKYYAVKVVRN 70 (360)
T ss_dssp GGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTT--CCEEEEEEECS
T ss_pred cceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCC--CeEEEEEEecc
Confidence 344566666666778888889999999999999998543 23899999864
No 196
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=96.11 E-value=0.0027 Score=60.99 Aligned_cols=37 Identities=32% Similarity=0.590 Sum_probs=29.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|.-.++||+|+||.||+++-.. +|..||||.+++.
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~--tg~~~AiK~i~K~ 225 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKAD--TGKMYAMKCLDKK 225 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETT--TCCEEEEEEEEHH
T ss_pred HHeEEEEEEecccCeEEEEEEECC--CCCEEEEEEEeHH
Confidence 567777899999999999998854 2348999999643
No 197
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=96.11 E-value=0.0022 Score=56.29 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=27.8
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+..+ + .||||++...
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~~--~--~vavK~~~~~ 58 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLLN--E--YVAVKIFPIQ 58 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEETT--E--EEEEEEECGG
T ss_pred hhchhhheecccCceEEEEEEECC--C--EEEEEEeecC
Confidence 345556789999999999999863 2 8999998643
No 198
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=96.02 E-value=0.0074 Score=51.93 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=28.7
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++....+||+|+||.||+|+.... +..||||.+....
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~--~~~vaiK~~~~~~ 59 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSN--QVRIAIKEIPERD 59 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTT--CCEEEEEEEECCC
T ss_pred CCCCcEEEeecCcEEEEEEEECCC--CeEEEEEEccCCc
Confidence 455567999999999999987443 2389999997653
No 199
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=95.99 E-value=0.0034 Score=54.71 Aligned_cols=36 Identities=28% Similarity=0.551 Sum_probs=27.4
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.|...+.||+|+||.||+|+..+| . .||||++....
T Consensus 22 ~y~~~~~lG~G~~g~V~~~~~~~~-~--~vavK~~~~~~ 57 (311)
T 3niz_A 22 KYQKLEKVGEGTYGVVYKAKDSQG-R--IVALKRIRLDA 57 (311)
T ss_dssp EEEEEEEEEECSSCEEEEEEETTS-C--EEEEEEEC---
T ss_pred hhHhhhhccCCCCeEEEEEEECCC-C--EEEEEEEeccc
Confidence 344457899999999999998665 3 89999997543
No 200
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=95.99 E-value=0.0034 Score=55.48 Aligned_cols=45 Identities=31% Similarity=0.382 Sum_probs=34.1
Q ss_pred HHHhhcCCCcCceeecCCCceEEEEEeCCC---CceeEEEEEEeecCC
Q 042573 339 LFKATDGFSLENLIGAGSFGSVYKGILTHD---DHETLVAVKVLNLEH 383 (388)
Q Consensus 339 l~~at~~f~~~~~lg~g~fg~vy~g~l~~g---~~~~~vavK~l~~~~ 383 (388)
+....++|...+.||+|+||.||+|+..+. .++..||||.++...
T Consensus 42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~ 89 (343)
T 1luf_A 42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA 89 (343)
T ss_dssp TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC
T ss_pred eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc
Confidence 334456777788999999999999998541 134589999997643
No 201
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=95.98 E-value=0.005 Score=54.71 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=30.0
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.+.|...+.||+|+||.||+|+..+. +..||||.++..
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~--~~~vavK~~~~~ 89 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGT--QKPYALKVLKKT 89 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTT--CCEEEEEEEEC-
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCC--CcEEEEEEeccc
Confidence 35566678999999999999998643 238999999764
No 202
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=95.97 E-value=0.002 Score=56.58 Aligned_cols=50 Identities=30% Similarity=0.529 Sum_probs=36.4
Q ss_pred cccCHHHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 332 LRVSYENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 332 ~~~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
..+++.++....+.|...+.||+|+||.||+|+.... |..||||.+....
T Consensus 12 ~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~--~~~vaiK~~~~~~ 61 (326)
T 2x7f_A 12 DEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKT--GQLAAIKVMDVTG 61 (326)
T ss_dssp ----CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEECCS
T ss_pred hhccchhccCCCCcEEEEEEeccCCCEEEEEEEECCC--CCeEEEEEEecCc
Confidence 3455566666778888889999999999999998432 2389999987543
No 203
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=95.96 E-value=0.0047 Score=56.11 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=22.2
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
..+||+|+||.||+|+..++.++..||||++...
T Consensus 26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~ 59 (405)
T 3rgf_A 26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT 59 (405)
T ss_dssp SCCCC-----EEEEEEESSSSCCCCEEEEECSSS
T ss_pred CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC
Confidence 3579999999999999864334458999999754
No 204
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=95.95 E-value=0.0045 Score=56.56 Aligned_cols=36 Identities=36% Similarity=0.614 Sum_probs=28.3
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
|...+.||+|+||.||+|+.... |..||||++....
T Consensus 56 y~~~~~lG~G~fg~Vy~~~~~~~--~~~vaiK~~~~~~ 91 (420)
T 1j1b_A 56 YTDTKVIGNGSFGVVYQAKLCDS--GELVAIKKVLQDK 91 (420)
T ss_dssp EEEEEEEEECSSEEEEEEEETTT--CCEEEEEEEECCT
T ss_pred EEeeeEEeeCCCEEEEEEEECCC--CcEEEEEEecccc
Confidence 44567899999999999998542 2389999997643
No 205
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=95.94 E-value=0.0036 Score=56.09 Aligned_cols=39 Identities=36% Similarity=0.521 Sum_probs=28.7
Q ss_pred cCCCcCceeecCCCceEEEEEeCC---CCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTH---DDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~---g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|++.+ ...+..||||+++..
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~ 112 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV 112 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSS
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccc
Confidence 345556789999999999999742 113458999999654
No 206
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=95.92 E-value=0.004 Score=55.90 Aligned_cols=40 Identities=35% Similarity=0.601 Sum_probs=29.3
Q ss_pred cCCCcCceeecCCCceEEEEEeCC-CCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTH-DDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~-g~~~~~vavK~l~~~~ 383 (388)
++|...+.||+|+||.||+|+... +..+..||||+++...
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~ 85 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY 85 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc
Confidence 356667899999999999998741 1134589999997643
No 207
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=95.90 E-value=0.005 Score=53.64 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=36.2
Q ss_pred cCHHHHHHhhcCCCcCceeecCCCceEEEEEeCC---CCceeEEEEEEeecCC
Q 042573 334 VSYENLFKATDGFSLENLIGAGSFGSVYKGILTH---DDHETLVAVKVLNLEH 383 (388)
Q Consensus 334 ~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~---g~~~~~vavK~l~~~~ 383 (388)
+...+.....++|...+.||+|+||.||+|+..+ ..++..||||.++...
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~ 69 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA 69 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC
Confidence 3444445556677777899999999999998632 1245689999997643
No 208
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=95.89 E-value=0.0054 Score=52.63 Aligned_cols=38 Identities=42% Similarity=0.635 Sum_probs=29.6
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++|...+.||+|+||.||+|+.... +..||||++....
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~ 56 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKD--KSVVAIKSLILGD 56 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTT--CCEEEEEECCCCT
T ss_pred ccceehhccccCCceeEEEEEEcCC--ceEEEEEEeeccc
Confidence 4566668899999999999998543 2389999986543
No 209
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=95.88 E-value=0.005 Score=59.44 Aligned_cols=34 Identities=38% Similarity=0.552 Sum_probs=27.3
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.||+|+||.||+|.+.....+..||||+++...
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~ 408 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA 408 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGG
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEecccc
Confidence 4799999999999988544345689999997653
No 210
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=95.84 E-value=0.0049 Score=55.32 Aligned_cols=37 Identities=38% Similarity=0.560 Sum_probs=29.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.... +..||||.++..
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~--~~~~AiK~~~~~ 74 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAE--EVFYAVKVLQKK 74 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTT--CCEEEEEEEEGG
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCC--CCEEEEEEEEHH
Confidence 4566678999999999999998543 348999999764
No 211
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=95.84 E-value=0.0064 Score=53.65 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=30.4
Q ss_pred hhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 342 ATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 342 at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
..++|.....||+|+||.||+|+.... |..||||+++...
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~--~~~vavK~~~~~~ 88 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPS--GQIMAVKRIRATV 88 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEECSCC
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCC--CCEEEEEEecccc
Confidence 345666667899999999999987432 2389999997643
No 212
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=95.83 E-value=0.0054 Score=54.20 Aligned_cols=40 Identities=25% Similarity=0.459 Sum_probs=30.6
Q ss_pred hhcCCCcCceeecCCCceEEEEEeC----CCCceeEEEEEEeecC
Q 042573 342 ATDGFSLENLIGAGSFGSVYKGILT----HDDHETLVAVKVLNLE 382 (388)
Q Consensus 342 at~~f~~~~~lg~g~fg~vy~g~l~----~g~~~~~vavK~l~~~ 382 (388)
..++|...+.||+|+||.||+|+.. .+ .+..||||.+...
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~-~~~~vavK~~~~~ 86 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTG-VSIQVAVKMLKEK 86 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSS-CEEEEEEEEECC-
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCC-cceEEEEEecccc
Confidence 3456666789999999999999972 23 4568999999754
No 213
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=95.80 E-value=0.0051 Score=56.76 Aligned_cols=38 Identities=32% Similarity=0.520 Sum_probs=30.6
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.++|...+.||+|+||.||+|+..++ . .||||+++...
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~-~--~vavK~~~~~~ 220 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGT-T--RVAIKTLKPGT 220 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTT-E--EEEEEECCTTS
T ss_pred hhHceeeeeecCCCCeEEEEEEECCC-c--eEEEEEeccCC
Confidence 34455567899999999999999765 3 79999998654
No 214
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=95.79 E-value=0.005 Score=53.66 Aligned_cols=37 Identities=35% Similarity=0.444 Sum_probs=29.0
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.++|...+.||+|+||.||+|+.. | + .||||.+....
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~~-~-~--~vavK~~~~~~ 72 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEWH-G-S--DVAVKILMEQD 72 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-T-E--EEEEEEECCCC
T ss_pred hhHceeeeEeecCCCeEEEEEEEC-C-C--cEEEEEecCCC
Confidence 445666678999999999999884 3 2 79999987543
No 215
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=95.77 E-value=0.0045 Score=55.66 Aligned_cols=37 Identities=43% Similarity=0.656 Sum_probs=29.1
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.... |..||||.++..
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~--~~~vavK~~~~~ 150 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRAD--NTLVAVKSCRET 150 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTT--CCEEEEEECCTT
T ss_pred HHeEEeeEeccCCCCeEEEEEEecC--CeEEEEEEcccc
Confidence 4455568899999999999999633 238999998754
No 216
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=95.76 E-value=0.0044 Score=55.69 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=28.0
Q ss_pred cCCCcCceeecCCCceEEEEEeC-CCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILT-HDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~-~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.. +| + .||||++...
T Consensus 73 ~~y~~~~~lG~G~~g~V~~a~~~~~~-~--~vavK~~~~~ 109 (377)
T 3byv_A 73 RTLVRGTVLGQEDPYAYLEATDQETG-E--SFEVHVPYFT 109 (377)
T ss_dssp EEEEEEEEEEEETTEEEEEEEC-CCC-C--EEEEEEEEEC
T ss_pred ceEEEcceeecCCCEEEEEEEECCCC-c--EEEEEEEeec
Confidence 44555678999999999999974 34 3 8999999754
No 217
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=95.76 E-value=0.0046 Score=52.94 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=27.0
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++|...+.||+|+||.||+|+..++ . .||||+++...
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~-~--~vavK~~~~~~ 60 (283)
T 3gen_A 24 KDLTFLKELGTGQFGVVKYGKWRGQ-Y--DVAIKMIKEGS 60 (283)
T ss_dssp GGEEEEEECC---CEEEEEEEETTT-E--EEEEEEECTTS
T ss_pred HHHHhHhhcCCCCCceEEEEEEcCC-C--eEEEEEecCCC
Confidence 4455567899999999999999766 4 79999997654
No 218
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=95.75 E-value=0.0034 Score=55.36 Aligned_cols=35 Identities=31% Similarity=0.546 Sum_probs=28.0
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+|...+.||+|+||.||+|+. .| . .||||++....
T Consensus 21 ~y~~~~~lG~G~~g~V~~~~~-~~-~--~vAvK~~~~~~ 55 (336)
T 2vuw_A 21 KLQRCEKIGEGVFGEVFQTIA-DH-T--PVAIKIIAIEG 55 (336)
T ss_dssp HHHTCEEEEEETTEEEEEEEE-TT-E--EEEEEEEEESC
T ss_pred cchheeeecccCceEEEEEEe-CC-c--eEEEEEEecCC
Confidence 344458899999999999988 34 3 89999998654
No 219
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=95.75 E-value=0.0083 Score=52.60 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=28.7
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.... |..||||+++..
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~--~~~vaiK~~~~~ 58 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPS--GQIMAVKRIRST 58 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTT--TEEEEEEEEECC
T ss_pred HHhhehheeccCCCEEEEEEEEcCC--CCEEEEEEeecc
Confidence 4566668899999999999998532 238999999764
No 220
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=95.74 E-value=0.0086 Score=51.49 Aligned_cols=39 Identities=38% Similarity=0.550 Sum_probs=27.7
Q ss_pred CCCcCc-eeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLEN-LIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~-~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.|.... .||+|+||.||+|+..+...+..||||.++...
T Consensus 17 ~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~ 56 (291)
T 1xbb_A 17 LLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA 56 (291)
T ss_dssp GEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC---
T ss_pred hhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccc
Confidence 344445 899999999999977443345689999997643
No 221
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=95.72 E-value=0.0056 Score=55.31 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=29.3
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.|...+.||+|+||.||+|+..+| . .||||++....
T Consensus 57 ~y~~~~~LG~G~fg~Vy~~~~~~~-~--~vaiK~~~~~~ 92 (390)
T 2zmd_A 57 IYSILKQIGSGGSSKVFQVLNEKK-Q--IYAIKYVNLEE 92 (390)
T ss_dssp EEEEEEEEECCSSEEEEEEECTTC-C--EEEEEEEECTT
T ss_pred ceEEEEEEccCCCeEEEEEEcCCC-C--EEEEEEEeccc
Confidence 366668899999999999988665 3 89999997643
No 222
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=95.72 E-value=0.0098 Score=57.19 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=26.5
Q ss_pred eeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 351 LIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 351 ~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.||+|+||.||+|++.....+..||||+++...
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~ 375 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT 375 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCC
Confidence 699999999999998542245589999998653
No 223
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=95.72 E-value=0.0052 Score=54.69 Aligned_cols=38 Identities=37% Similarity=0.579 Sum_probs=30.0
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.++|...+.||+|+||.||+|+.... |..||||.++..
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~--~~~~AvK~~~~~ 59 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKET--GDLYAVKVLKKD 59 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEEHH
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCC--CCEEEEEEEEHH
Confidence 35677778999999999999998542 238999999753
No 224
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=95.68 E-value=0.006 Score=54.88 Aligned_cols=39 Identities=36% Similarity=0.596 Sum_probs=30.7
Q ss_pred HhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 341 KATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 341 ~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
...++|...+.||+|+||.||+|+-... |..||||+++.
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vaiK~~~~ 89 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKAYDRVE--QEWVAIKIIKN 89 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEETTT--TEEEEEEEECS
T ss_pred EeeeeEEEEEEEeecCCEEEEEEEEcCC--CcEEEEEEEec
Confidence 3456677778999999999999987543 24899999964
No 225
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=95.68 E-value=0.0075 Score=52.38 Aligned_cols=40 Identities=33% Similarity=0.489 Sum_probs=30.0
Q ss_pred cCCCcCceeecCCCceEEEEEeC---CCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILT---HDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~---~g~~~~~vavK~l~~~~ 383 (388)
++|...+.||+|+||.||+|+.. +...+..||||+++...
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~ 65 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA 65 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch
Confidence 45556688999999999999862 11245699999997653
No 226
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=95.67 E-value=0.004 Score=55.65 Aligned_cols=40 Identities=23% Similarity=0.425 Sum_probs=29.6
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCC---ceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDD---HETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~---~~~~vavK~l~~~ 382 (388)
.++|...+.||+|+||.||+|+...+. .+..||||.+...
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 76 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSD 76 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETT
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeecc
Confidence 346666788999999999999986531 1247999998754
No 227
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=95.67 E-value=0.0086 Score=51.47 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=30.1
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHG 384 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~ 384 (388)
+.|.....||+|+||.||+|+.... |..||||.+.....
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~--~~~vavK~~~~~~~ 69 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTAL--DRQVALTFVDPQGV 69 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTT--TEEEEEEESCTTCC
T ss_pred CcEEEEEEEcccCCeEEEEEEecCC--CceEEEEEECcccc
Confidence 3455567899999999999988542 24899999986543
No 228
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=95.66 E-value=0.0024 Score=55.87 Aligned_cols=49 Identities=33% Similarity=0.503 Sum_probs=35.8
Q ss_pred cCHHHHHHhhcCCCcCceeecCCCceEEEEEeCC---CCceeEEEEEEeecC
Q 042573 334 VSYENLFKATDGFSLENLIGAGSFGSVYKGILTH---DDHETLVAVKVLNLE 382 (388)
Q Consensus 334 ~~~~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~---g~~~~~vavK~l~~~ 382 (388)
+..++.+.+.++|...+.||+|+||.||+|+..+ ...+..||||++...
T Consensus 15 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~ 66 (322)
T 1p4o_A 15 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA 66 (322)
T ss_dssp CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT
T ss_pred cChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccc
Confidence 3344555566777778899999999999998742 113458999999754
No 229
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=95.64 E-value=0.0042 Score=55.54 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=29.2
Q ss_pred HhhcCCCcCceeecCCCceEEEEEeCC---CCceeEEEEEEeecC
Q 042573 341 KATDGFSLENLIGAGSFGSVYKGILTH---DDHETLVAVKVLNLE 382 (388)
Q Consensus 341 ~at~~f~~~~~lg~g~fg~vy~g~l~~---g~~~~~vavK~l~~~ 382 (388)
...+.|...+.||+|+||.||+|+..+ ...+..||||+++..
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 106 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA 106 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC
Confidence 344566667889999999999995311 012348999999764
No 230
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=95.63 E-value=0.0076 Score=52.73 Aligned_cols=39 Identities=36% Similarity=0.664 Sum_probs=30.1
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.+.|...+.||+|+||.||+|+.... |..||||++....
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~--~~~vavK~~~~~~ 80 (320)
T 3a99_A 42 ESQYQVGPLLGSGGFGSVYSGIRVSD--NLPVAIKHVEKDR 80 (320)
T ss_dssp TTTEEEEEECSSSSSCEEEEEEETTT--TEEEEEEEEEGGG
T ss_pred cCceEEEEEEeeCCCeEEEEEEECCC--CcEEEEEEEeccc
Confidence 34566668899999999999987433 2489999997653
No 231
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=95.62 E-value=0.0041 Score=54.16 Aligned_cols=43 Identities=35% Similarity=0.566 Sum_probs=28.8
Q ss_pred HhhcCCCcCceeecCCCceEEEEEeCC-CCceeEEEEEEeecCC
Q 042573 341 KATDGFSLENLIGAGSFGSVYKGILTH-DDHETLVAVKVLNLEH 383 (388)
Q Consensus 341 ~at~~f~~~~~lg~g~fg~vy~g~l~~-g~~~~~vavK~l~~~~ 383 (388)
...++|...+.||+|+||.||+|+... +..+..||||+++...
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~ 74 (313)
T 3brb_A 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDN 74 (313)
T ss_dssp CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---C
T ss_pred cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccc
Confidence 344555666789999999999998843 2245689999987543
No 232
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=95.61 E-value=0.011 Score=51.05 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=29.6
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.|...+.||+|+||.||+|+-... |..||||++....
T Consensus 20 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~ 57 (297)
T 3fxz_A 20 KKYTRFEKIGQGASGTVYTAMDVAT--GQEVAIRQMNLQQ 57 (297)
T ss_dssp GTBCCCEEEEEETTEEEEEEEBTTT--CCEEEEEEEEGGG
T ss_pred hceeeeeeeccCCCeEEEEEEECCC--CcEEEEEEeeccc
Confidence 4567778999999999999986332 2389999997543
No 233
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=95.57 E-value=0.0067 Score=57.31 Aligned_cols=38 Identities=32% Similarity=0.520 Sum_probs=30.8
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.++|...+.||+|+||.||+|+..++ . .||||+++...
T Consensus 266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~-~--~vavK~~~~~~ 303 (535)
T 2h8h_A 266 RESLRLEVKLGQGCFGEVWMGTWNGT-T--RVAIKTLKPGT 303 (535)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTT-E--EEEEEEECTTS
T ss_pred hhhhhhheecccCCCeEEEEEEECCC-c--eEEEEEeCCCC
Confidence 44555667899999999999999765 3 79999998654
No 234
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=95.56 E-value=0.024 Score=32.56 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=14.9
Q ss_pred ccceeehhhhHHHHHHHHHHHHHHHHhhccc
Q 042573 286 RSLKLIIPVVTVILLVTGMSCFIITSWQSKS 316 (388)
Q Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 316 (388)
....++.++++.++++++++..+++++|||+
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 3345666666544444444444444444443
No 235
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=95.56 E-value=0.0073 Score=52.18 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=26.8
Q ss_pred CCcCceeecCCCceEEEEEeCC--CCceeEEEEEEeecCC
Q 042573 346 FSLENLIGAGSFGSVYKGILTH--DDHETLVAVKVLNLEH 383 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~--g~~~~~vavK~l~~~~ 383 (388)
|...+.||+|+||.||+|++.. ...|..||||+++...
T Consensus 23 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~ 62 (302)
T 4e5w_A 23 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES 62 (302)
T ss_dssp EEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC---
T ss_pred hhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc
Confidence 4445789999999999999621 1144589999997543
No 236
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=95.55 E-value=0.0074 Score=54.06 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=29.2
Q ss_pred cCCCcCceeecCCCceEEEEEeCC-----CCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTH-----DDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~-----g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+..+ ...+..||||.++..
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~ 124 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD 124 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC
Confidence 445556789999999999998732 114458999999765
No 237
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=95.52 E-value=0.0028 Score=55.25 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=33.3
Q ss_pred HHHHHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 337 ENLFKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 337 ~~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.+....+.|...+.||+|+||.||+++..+| . .||||.+....
T Consensus 21 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~-~--~vavK~~~~~~ 64 (313)
T 3cek_A 21 QSMSVKGRIYSILKQIGSGGSSKVFQVLNEKK-Q--IYAIKYVNLEE 64 (313)
T ss_dssp CEEEETTEEEEEEEEEECCSSEEEEEEECTTC-C--EEEEEEEECSS
T ss_pred eeeeeccceEEEEEEecCCCCEEEEEEEcCCC-c--EEEEEEecccc
Confidence 33334445666678899999999999988665 3 89999997543
No 238
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=95.52 E-value=0.0062 Score=56.20 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=28.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++|...+.||+|+||.||+|+.. | + .||||.++...
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~~-~-~--~vavK~~~~~~ 228 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDYR-G-N--KVAVKCIKNDA 228 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET-T-E--EEEEEEESSCT
T ss_pred HHeEEEeeecCcCCeeEEEEEec-C-C--eEEEEEeCCch
Confidence 44555678999999999999985 3 2 79999997654
No 239
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=95.52 E-value=0.0086 Score=54.83 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=28.5
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.|...+.||+|+||.||+|+-... |..||||+++..
T Consensus 98 ry~~~~~LG~G~fg~V~~a~~~~~--~~~vAvK~~~~~ 133 (429)
T 3kvw_A 98 RYEVLKVIGKGSFGQVVKAYDHKV--HQHVALKMVRNE 133 (429)
T ss_dssp TEEEEEEEEESSSEEEEEEEETTT--TEEEEEEEECSC
T ss_pred cEEEEEEcccCccEEEEEEEECCC--CcEEEEEEECCc
Confidence 455568899999999999987543 348999999653
No 240
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=95.44 E-value=0.0092 Score=51.86 Aligned_cols=40 Identities=33% Similarity=0.554 Sum_probs=29.0
Q ss_pred hhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 342 ATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 342 at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
-.++|...+.||+|+||.||+|+.... |..||||.+....
T Consensus 29 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~--~~~vavK~~~~~~ 68 (312)
T 2iwi_A 29 FEAEYRLGPLLGKGGFGTVFAGHRLTD--RLQVAIKVIPRNR 68 (312)
T ss_dssp ----CEEEEEEEEETTEEEEEEECTTT--CCEEEEEECCSTT
T ss_pred hhhceEEeeEEEcCCCEEEEEEEEccC--CeEEEEEEEeccc
Confidence 345677788999999999999987432 2389999996543
No 241
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=95.44 E-value=0.011 Score=53.01 Aligned_cols=33 Identities=42% Similarity=0.656 Sum_probs=26.2
Q ss_pred CceeecCCCceEEEEEeC--CCCceeEEEEEEeecC
Q 042573 349 ENLIGAGSFGSVYKGILT--HDDHETLVAVKVLNLE 382 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~--~g~~~~~vavK~l~~~ 382 (388)
.+.||+|+||.||+|+.. ++ .+..||||.++..
T Consensus 94 ~~~LG~G~fg~Vy~~~~~~~~~-~~~~vavK~~~~~ 128 (373)
T 3c1x_A 94 NEVIGRGHFGCVYHGTLLDNDG-KKIHCAVKSLNRI 128 (373)
T ss_dssp EEEEECCSSSEEEEEEEEETTT-EEEEEEEEECCSC
T ss_pred CcEeeeCCCeEEEEEEEECCCC-cEEEEEEEEcCCC
Confidence 467999999999999883 33 4457999998754
No 242
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=95.43 E-value=0.0084 Score=53.68 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=29.7
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.+|...+.||+|+||.||+|+.... |..||||++....
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vavK~~~~~~ 99 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVER--LEDFALKVFTMGA 99 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEEECCS
T ss_pred eeeeeeeeccCCCCEEEEEEEECCC--CceeEEEEEEecc
Confidence 3455668899999999999997532 2389999998754
No 243
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=95.40 E-value=0.011 Score=52.37 Aligned_cols=37 Identities=35% Similarity=0.437 Sum_probs=28.5
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.|...+.||+|+||.||+|+-... |..||||++....
T Consensus 55 ~y~~~~~lG~G~~g~Vy~a~~~~~--~~~vaiK~~~~~~ 91 (348)
T 1u5q_A 55 LFSDLREIGHGSFGAVYFARDVRN--SEVVAIKKMSYSG 91 (348)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEEESCS
T ss_pred heeeeeEEccCCCEEEEEEEEccC--CeEEEEEEEcccc
Confidence 355667899999999999986432 2389999997543
No 244
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=95.38 E-value=0.0058 Score=53.75 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=29.4
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.++|...+.||+|+||.||+|+.. | . .||||++...
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~-~-~--~vavK~~~~~ 71 (337)
T 3mdy_A 36 AKQIQMVKQIGKGRYGEVWMGKWR-G-E--KVAVKVFFTT 71 (337)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEET-T-E--EEEEEEEEGG
T ss_pred ccceEEEeEeecCCCeEEEEEEEC-C-c--eEEEEEEecc
Confidence 356777789999999999999986 3 3 8999998643
No 245
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=95.38 E-value=0.0055 Score=54.49 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=30.9
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.++|...+.||+|+||.||+|+..+ +|..||||.++..
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~--~~~~~AiK~~~~~ 56 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKG--TDELYAVKILKKD 56 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETT--EEEEEEEEEEEHH
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECC--CCCEEEEEEEEHH
Confidence 3567777899999999999999854 3458999999753
No 246
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=95.33 E-value=0.0083 Score=52.90 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=29.3
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++|...+.||+|+||.||+|+-... |..||||+++...
T Consensus 24 ~~y~~~~~lG~G~~g~Vy~a~~~~~--~~~vavK~~~~~~ 61 (335)
T 3dls_A 24 QKYSTMSPLGSGAFGFVWTAVDKEK--NKEVVVKFIKKEK 61 (335)
T ss_dssp HHEEEEEECSSSSSCSEEEEEETTT--TEEEEEEEEESTT
T ss_pred cceEEEeEEEecCCEEEEEEEECCC--CcEEEEEEEehhh
Confidence 3455567899999999999986433 2489999998654
No 247
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=95.31 E-value=0.0082 Score=53.41 Aligned_cols=38 Identities=32% Similarity=0.539 Sum_probs=28.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCC-CceeEEEEEEeec
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHD-DHETLVAVKVLNL 381 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g-~~~~~vavK~l~~ 381 (388)
++|...+.||+|+||.||+|+...+ .+|..||||.++.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~ 92 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKK 92 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeH
Confidence 4566678899999999999988321 1334899999864
No 248
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=95.30 E-value=0.01 Score=51.06 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=26.7
Q ss_pred cCceeecCCCceEEEEEeCC-CCceeEEEEEEeecC
Q 042573 348 LENLIGAGSFGSVYKGILTH-DDHETLVAVKVLNLE 382 (388)
Q Consensus 348 ~~~~lg~g~fg~vy~g~l~~-g~~~~~vavK~l~~~ 382 (388)
.++.||+|+||.||+|+..+ +..+..||||++...
T Consensus 25 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~ 60 (298)
T 3pls_A 25 SDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRI 60 (298)
T ss_dssp EEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTC
T ss_pred cCceeccCCCceEEEEEEecCCCceeeeeeeecccc
Confidence 34789999999999998733 323447999998753
No 249
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=95.29 E-value=0.011 Score=51.70 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=27.7
Q ss_pred CCcCceeecCCCceEEEEEeC---CCCceeEEEEEEeecC
Q 042573 346 FSLENLIGAGSFGSVYKGILT---HDDHETLVAVKVLNLE 382 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~---~g~~~~~vavK~l~~~ 382 (388)
|...+.||+|+||.||+|++. .. +|..||||++...
T Consensus 43 y~~~~~lg~G~~g~V~~~~~~~~~~~-~~~~vavK~~~~~ 81 (326)
T 2w1i_A 43 LKFLQQLGKGNFGSVEMCRYDPLQDN-TGEVVAVKKLQHS 81 (326)
T ss_dssp EEEEEEEECCSSEEEEEEEECTTSSS-CCEEEEEEEESSC
T ss_pred ceeeeeeccCCCeEEEEEEeccccCC-CceEEEEEEeccC
Confidence 444578999999999999963 22 4559999999764
No 250
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=95.27 E-value=0.011 Score=51.80 Aligned_cols=37 Identities=27% Similarity=0.511 Sum_probs=28.2
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+-... |..||||.++..
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~ 72 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITN--NEKVVVKILKPV 72 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTT--CCEEEEEEECSC
T ss_pred CceEEEEEecccCCeEEEEEEECCC--CcEEEEEEeccc
Confidence 3455567899999999999987433 238999998753
No 251
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=95.27 E-value=0.0091 Score=52.35 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=28.3
Q ss_pred CCCcCceeecCCCceEEEEEeCC--CCceeEEEEEEeecC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTH--DDHETLVAVKVLNLE 382 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~--g~~~~~vavK~l~~~ 382 (388)
+|...+.||+|+||.||+|++.. ...|..||||++...
T Consensus 24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~ 63 (327)
T 3lxl_A 24 HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS 63 (327)
T ss_dssp GEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC
T ss_pred hhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC
Confidence 34445789999999999999621 114458999999754
No 252
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=95.27 E-value=0.01 Score=50.95 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=29.4
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEHG 384 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~~ 384 (388)
.|...+.||+|+||.||+++.... |..||||++.....
T Consensus 23 ~y~~~~~lg~G~~g~V~~~~~~~~--~~~~aiK~~~~~~~ 60 (285)
T 3is5_A 23 LFIFKRKLGSGAFGDVHLVEERSS--GLERVIKTINKDRS 60 (285)
T ss_dssp HEEEEEEEEECSSCEEEEEEETTT--CCEEEEEEEEGGGC
T ss_pred heeecceeccCCCeEEEEEEEccC--CceEEEEEeecccc
Confidence 355568899999999999988543 23899999976543
No 253
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=95.27 E-value=0.012 Score=53.74 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=30.1
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.++|...+.||+|+||.||+|+.... |..||||.+...
T Consensus 134 ~~~y~~~~~LG~G~~g~V~~a~~~~~--~~~vavK~~~~~ 171 (419)
T 3i6u_A 134 RDEYIMSKTLGSGACGEVKLAFERKT--CKKVAIRIISKR 171 (419)
T ss_dssp HTTEEEEEEEEECSSSEEEEEEETTT--CCEEEEEEEEGG
T ss_pred hccEEEEeEEeeCCCeEEEEEEECCC--CcEEEEEEEEec
Confidence 45666678899999999999988543 348999999753
No 254
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=95.25 E-value=0.012 Score=53.11 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=28.3
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
+.|...+.||+|+||.||+|+-... |..||||+++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~ 72 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQG--KKFVAMKVVKS 72 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEECS
T ss_pred CeEEEEEEeeecCCeeEEEEEecCC--CeEEEEEEEec
Confidence 4455667899999999999987543 24899999964
No 255
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=95.22 E-value=0.014 Score=52.13 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=30.5
Q ss_pred hcCCCcCceeecCCCceEEEEEeC-CCCceeEEEEEEeecCC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILT-HDDHETLVAVKVLNLEH 383 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~-~g~~~~~vavK~l~~~~ 383 (388)
.++|...+.||+|+||.||+|+.. +| . .||||.++...
T Consensus 93 ~~~y~~~~~lg~G~~g~Vy~a~~~~~g-~--~vavK~~~~~~ 131 (365)
T 2y7j_A 93 YQKYDPKDVIGRGVSSVVRRCVHRATG-H--EFAVKIMEVTA 131 (365)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTC-C--EEEEEEEETTS
T ss_pred hhhcccceEEecCCCEEEEEEEECCCC-c--EEEEEEEEccc
Confidence 345666789999999999999985 34 3 89999987653
No 256
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=95.22 E-value=0.007 Score=56.57 Aligned_cols=39 Identities=28% Similarity=0.580 Sum_probs=30.4
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
..+|...+.||+|+||.||+|+..+. +..||||+++...
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~--~~~vavK~~~~~~ 257 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKY--SLTVAVKTLKEDT 257 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGG--TEEEEEEECCSSS
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCC--CeEEEEEEecCcc
Confidence 34455568899999999999999652 2489999997653
No 257
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=95.22 E-value=0.011 Score=50.75 Aligned_cols=35 Identities=46% Similarity=0.685 Sum_probs=27.7
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.|...+.||+|+||.||+|+..+ .||||.++...
T Consensus 24 ~~y~~~~~lG~G~~g~Vy~~~~~~-----~vavK~~~~~~ 58 (289)
T 3og7_A 24 GQITVGQRIGSGSFGTVYKGKWHG-----DVAVKMLNVTA 58 (289)
T ss_dssp TSCEEEEEEEECSSEEEEEEESSS-----EEEEEEESCSS
T ss_pred cceeeeeEecCCCCeEEEEEEEcC-----ceEEEEEeccC
Confidence 456666889999999999998742 49999997543
No 258
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=95.21 E-value=0.011 Score=52.10 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=28.8
Q ss_pred cCCCcCceeecCCCceEEEEEeCCC-----CceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHD-----DHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g-----~~~~~vavK~l~~~~ 383 (388)
++|...+.||+|+||.||+|+..+. ..+..||||+++...
T Consensus 35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~ 79 (334)
T 2pvf_A 35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA 79 (334)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC
T ss_pred hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC
Confidence 4555568899999999999987420 134489999997643
No 259
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=95.21 E-value=0.017 Score=49.91 Aligned_cols=38 Identities=42% Similarity=0.743 Sum_probs=29.2
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.|...+.||+|+||.||+|+-... |..||||.+....
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~ 59 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRT--QKVVAIKIIDLEE 59 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTT--CCEEEEEEEETTT
T ss_pred HHHHHhhhhcccCCeEEEEEEECCC--CcEEEEEEecccc
Confidence 3455567899999999999987432 2389999997654
No 260
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=95.18 E-value=0.016 Score=48.93 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.5
Q ss_pred CceeecCCCceEEEEEe-CCCCceeE--EEEEEeecC
Q 042573 349 ENLIGAGSFGSVYKGIL-THDDHETL--VAVKVLNLE 382 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l-~~g~~~~~--vavK~l~~~ 382 (388)
...||+|+||.||+|+. .+| . . ||||..+..
T Consensus 52 ~~~ig~G~~g~Vy~a~~~~~g-~--~~~vAvK~~~~~ 85 (258)
T 1zth_A 52 GGVISTGKEANVFYADGVFDG-K--PVAMAVKIYRIE 85 (258)
T ss_dssp EEEEEECSSEEEEEEEEEETT-E--EEEEEEEEECCC
T ss_pred CCEEeecceEEEEEEEEcCCC-c--EeeEEEEEEECC
Confidence 46799999999999998 556 4 7 999987543
No 261
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=95.18 E-value=0.012 Score=51.76 Aligned_cols=39 Identities=38% Similarity=0.621 Sum_probs=30.2
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.++|...+.||+|+||.||+|+-... |..||||+++...
T Consensus 33 ~~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~~ 71 (329)
T 3gbz_A 33 IDRYRRITKLGEGTYGEVYKAIDTVT--NETVAIKRIRLEH 71 (329)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTT--TEEEEEEECCCCC
T ss_pred hhhEEEEEEEEecCCeEEEEEEECCC--CceEEEEEEcccc
Confidence 35666678999999999999986432 3489999997543
No 262
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=95.16 E-value=0.0047 Score=54.09 Aligned_cols=45 Identities=33% Similarity=0.583 Sum_probs=27.3
Q ss_pred HHHHhhcCCCcCceeecCCCceEEEEEeCCCC-ceeEEEEEEeecC
Q 042573 338 NLFKATDGFSLENLIGAGSFGSVYKGILTHDD-HETLVAVKVLNLE 382 (388)
Q Consensus 338 ~l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~-~~~~vavK~l~~~ 382 (388)
++....++|...+.||+|+||.||+|+..... ....||||.++..
T Consensus 17 ~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~ 62 (323)
T 3qup_A 17 DVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKAD 62 (323)
T ss_dssp TTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC---
T ss_pred hcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEeccc
Confidence 33344567777889999999999999885431 1126999998754
No 263
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=95.14 E-value=0.015 Score=51.76 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=29.6
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.|...+.||+|+||.||+++-... |..||||++....
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vavK~~~~~~ 57 (361)
T 3uc3_A 20 DRYDFVKDIGSGNFGVARLMRDKLT--KELVAVKYIERGA 57 (361)
T ss_dssp TTEEEEEEESSSTTSSEEEEEETTT--CCEEEEEEEESST
T ss_pred CcEEEEEEeccCCCEEEEEEEECCC--CcEEEEEEEecCc
Confidence 4455567899999999999988532 2389999997654
No 264
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=95.14 E-value=0.012 Score=55.94 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=28.7
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|.-.+.||+|+||.||+|+-.. +|..||||.+...
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~--tg~~~AiK~i~~~ 193 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERA--TGNNFAAKFVMTP 193 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETT--TCCEEEEEEEECC
T ss_pred cccEEEEEEeeccCeEEEEEEECC--CCCEEEEEEEecc
Confidence 345556789999999999998743 2348999999754
No 265
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=95.13 E-value=0.014 Score=50.97 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=27.5
Q ss_pred CcCceeecCCCceEEEEEeCC--CCceeEEEEEEeecCC
Q 042573 347 SLENLIGAGSFGSVYKGILTH--DDHETLVAVKVLNLEH 383 (388)
Q Consensus 347 ~~~~~lg~g~fg~vy~g~l~~--g~~~~~vavK~l~~~~ 383 (388)
...+.||+|+||.||++++.. ..+|..||||+++...
T Consensus 34 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~ 72 (318)
T 3lxp_A 34 KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA 72 (318)
T ss_dssp EEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC
T ss_pred hhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc
Confidence 445789999999999998732 1145589999997653
No 266
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=95.13 E-value=0.013 Score=51.57 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=27.0
Q ss_pred CCCc-CceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 345 GFSL-ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 345 ~f~~-~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+|.. .++||+|+||.||+|+.... |..||||++...
T Consensus 29 ~y~i~~~~lG~G~~g~V~~~~~~~~--~~~vavK~~~~~ 65 (336)
T 3fhr_A 29 DYQLSKQVLGLGVNGKVLECFHRRT--GQKCALKLLYDS 65 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEESS
T ss_pred eeEecceeeeeCCCeEEEEEEECCC--CCEEEEEEecCc
Confidence 4444 35799999999999988632 238999998653
No 267
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=95.12 E-value=0.019 Score=49.24 Aligned_cols=32 Identities=41% Similarity=0.446 Sum_probs=25.8
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
...||+|+||.||+|+.... +..||+|.+...
T Consensus 31 ~~~lg~G~~g~Vy~~~~~~~--~~~va~k~~~~~ 62 (290)
T 1t4h_A 31 DIEIGRGSFKTVYKGLDTET--TVEVAWCELQDR 62 (290)
T ss_dssp EEEEEECSSEEEEEEEETTT--CCEEEEEEEEGG
T ss_pred eeeccCCCCeEEEEeEecCC--ceEEEEEEecch
Confidence 35799999999999988554 348999998754
No 268
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=95.11 E-value=0.016 Score=51.92 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=28.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.|...+.||+|+||.||+|+-... |..||||++...
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~~~~--~~~vaiK~~~~~ 78 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAIDKRS--GEKVAIKKLSRP 78 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEECST
T ss_pred ccEEEEeEEecCCCeEEEEEEECCC--CCEEEEEEeccc
Confidence 4555567899999999999987532 348999999764
No 269
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=95.09 E-value=0.011 Score=52.00 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=29.2
Q ss_pred cCCCcCceeecCCCceEEEEEeCC-CCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTH-DDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~-g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+++... ..+|..||||.++..
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~ 56 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKA 56 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHH
Confidence 456666899999999999998731 113348999999764
No 270
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=95.09 E-value=0.014 Score=52.45 Aligned_cols=40 Identities=33% Similarity=0.429 Sum_probs=29.2
Q ss_pred cCCCcCceeecCCCceEEEEEeCC-----CCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTH-----DDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~-----g~~~~~vavK~l~~~~ 383 (388)
+.|...+.||+|+||.||+|+..+ ...+..||||+++...
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~ 113 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA 113 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc
Confidence 345556789999999999998632 1134589999997653
No 271
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=95.09 E-value=0.016 Score=51.77 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=26.9
Q ss_pred CcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 347 SLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 347 ~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.-...||+|+||.||+|+-.+| . .||||.++..
T Consensus 98 ~I~~~IG~Gk~a~VY~a~d~~G-~--~vAvKi~r~~ 130 (397)
T 4gyi_A 98 SVGSRIGVGKESDIMIVADEKG-K--QKVLKIHRLG 130 (397)
T ss_dssp EEEEEEEECSSEEEEEEECTTC-C--EEEEEEECTT
T ss_pred EecCEeeeCCceEEEEEECCCC-C--EEEEEEEecc
Confidence 3346899999999999988766 3 8999988654
No 272
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=95.06 E-value=0.016 Score=51.33 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=28.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+-... |..||||++...
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~ 60 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRS--GEKVAIKKLSRP 60 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEESST
T ss_pred ceEEEeeeEecCCCeEEEEEEECCC--CCEEEEEEeccc
Confidence 4455668899999999999987532 348999999654
No 273
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=95.06 E-value=0.014 Score=53.46 Aligned_cols=37 Identities=38% Similarity=0.585 Sum_probs=29.5
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+-... |..||||++...
T Consensus 26 ~~y~~~~~lG~G~~g~V~~a~~~~~--~~~vAiK~~~~~ 62 (432)
T 3n9x_A 26 DNYIIKHLIGRGSYGYVYLAYDKNT--EKNVAIKKVNRM 62 (432)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTT--TEEEEEEEECST
T ss_pred CCEEEEEEEeecCCEEEEEEEECCC--CcEEEEEEeCch
Confidence 4566678899999999999987543 348999999754
No 274
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=95.05 E-value=0.01 Score=57.65 Aligned_cols=38 Identities=32% Similarity=0.486 Sum_probs=30.5
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.++|...+.||+|+||.||+|+..+. |..||||+++..
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~--~~~vAvK~l~~~ 377 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGT--DELYAVKILKKD 377 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSS--CCEEEEEEEEHH
T ss_pred ccceEEEEEEccCCCEEEEEEEECCC--CcEEEEEEEecc
Confidence 35677778999999999999998643 348999999753
No 275
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=95.04 E-value=0.013 Score=51.84 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=29.7
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++|...+.||+|+||.||+++-... |..||||.++...
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~--~~~~avK~~~~~~ 59 (342)
T 2qr7_A 22 DGYEVKEDIGVGSYSVCKRCIHKAT--NMEFAVKIIDKSK 59 (342)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEEETTT
T ss_pred ccEEEEEEEeeCCCEEEEEEEECCC--CCEEEEEEEEccc
Confidence 3455567899999999999988542 3489999997654
No 276
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=94.99 E-value=0.013 Score=51.80 Aligned_cols=41 Identities=27% Similarity=0.512 Sum_probs=31.2
Q ss_pred HHhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 340 FKATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 340 ~~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
....+.|...+.||+|+||.||+|+.... +..||||.+...
T Consensus 22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vaiK~~~~~ 62 (345)
T 3hko_A 22 LELQKKYHLKGAIGQGSYGVVRVAIENQT--RAIRAIKIMNKN 62 (345)
T ss_dssp HHHHHHEEEEEEEEECSSCEEEEEEETTT--CCEEEEEEEEHH
T ss_pred hhhhhheeecceeeecCCeEEEEEEECCC--CceEEEeehhhh
Confidence 34445577778999999999999987443 348999998643
No 277
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=94.98 E-value=0.015 Score=50.95 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=26.0
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.||+|+||.||+|+.... |..||||.+....
T Consensus 35 ~~lG~G~~g~V~~~~~~~~--~~~vavK~~~~~~ 66 (327)
T 3lm5_A 35 KELGRGKFAVVRQCISKST--GQEYAAKFLKKRR 66 (327)
T ss_dssp EEEEEETTEEEEEEEETTT--CCEEEEEEEESEE
T ss_pred ceeCCCCCeEEEEEEECCC--CCEEEEEEEehhh
Confidence 6799999999999988542 2389999997643
No 278
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=94.97 E-value=0.013 Score=52.01 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=28.8
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+++.... |..||||.++..
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~--~~~~aiK~~~~~ 77 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKES--GNHYAMKILDKQ 77 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTT--CCEEEEEEEEHH
T ss_pred HHCEEEEEeecCcCcEEEEEEECCC--CCEEEEEEEEhH
Confidence 3456668899999999999998532 238999998653
No 279
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=94.97 E-value=0.013 Score=54.03 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=21.5
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.|...+.||+|+||.||+|+-... |..||||++...
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vaiK~i~~~ 89 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLE--KRVVAIKKILRV 89 (458)
T ss_dssp TTEEECCC-------CEEEEEECC----CEEEEEEECST
T ss_pred CCeEEeeEeeecCCeEEEEEEECCC--CcEEEEEEechh
Confidence 4566678899999999999987432 348999999653
No 280
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=94.97 E-value=0.013 Score=51.52 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=28.5
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.|.....||+|+||.||+|+.... |..||||++....
T Consensus 26 ~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~ 62 (331)
T 4aaa_A 26 KYENLGLVGEGSYGMVMKCRNKDT--GRIVAIKKFLESD 62 (331)
T ss_dssp GEEEEEEGGGGTTSSEEEEEETTT--CCEEEEEEEESCS
T ss_pred hheeeeEEeecCCEEEEEEEECCC--CceEEEEEEecCC
Confidence 344457899999999999998642 2389999986543
No 281
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=94.96 E-value=0.017 Score=50.15 Aligned_cols=34 Identities=47% Similarity=0.679 Sum_probs=26.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+..+ .+|||.++..
T Consensus 36 ~~~~~~~~lG~G~~g~Vy~~~~~~-----~~avk~~k~~ 69 (307)
T 3lb7_A 36 SEVMLSTRIGSGSFGTVYKGKWHG-----DVAVKILKVV 69 (307)
T ss_dssp TSCCEEEEEEECSSCEEEEEESSS-----EEEEEECCCS
T ss_pred cceEEEeEecCCCCeEEEEEEECC-----EEEEEEEecC
Confidence 455666789999999999998742 4899988754
No 282
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=94.94 E-value=0.013 Score=55.31 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=29.3
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.... |..||||++...
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~t--g~~vAiK~l~k~ 221 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKAT--GKLYACKKLNKK 221 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTT--CCEEEEEEEEHH
T ss_pred hheEEEEEEeeCCCeEEEEEEECCC--CcEEEEEEEEhH
Confidence 4566668899999999999998542 238999999653
No 283
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=94.94 E-value=0.012 Score=50.11 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=28.5
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++|...+.||+|+||.||+|+.. | . .||||.++...
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~-~-~--~vavK~~~~~~ 56 (278)
T 1byg_A 21 KELKLLQTIGKGEFGDVMLGDYR-G-N--KVAVKCIKNDA 56 (278)
T ss_dssp GGEEEEEEEEECSSCEEEEEEET-T-E--EEEEEECCCCC
T ss_pred hhceEEeEEecCCCceEEEEEEc-C-C--EEEEEEecchh
Confidence 34555688999999999999985 3 3 89999987643
No 284
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=94.94 E-value=0.012 Score=51.68 Aligned_cols=39 Identities=36% Similarity=0.521 Sum_probs=26.1
Q ss_pred cCCCcCceeecCCCceEEEEEeCC---CCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTH---DDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~---g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+..+ ..++..||||++...
T Consensus 30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 71 (327)
T 2yfx_A 30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV 71 (327)
T ss_dssp GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSS
T ss_pred hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccc
Confidence 456667889999999999998632 113448999999654
No 285
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=94.89 E-value=0.018 Score=49.98 Aligned_cols=37 Identities=32% Similarity=0.518 Sum_probs=26.7
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.... |..||||+++..
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~--~~~vavK~~~~~ 68 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLD--GVPVALKKVQIF 68 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTT--CCEEEEEEECTT
T ss_pred cceEEEEeecCCCCceEEEEEEcCC--CceEEEEeeehh
Confidence 3466668899999999999987432 238999999753
No 286
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=94.88 E-value=0.023 Score=49.40 Aligned_cols=37 Identities=32% Similarity=0.656 Sum_probs=29.3
Q ss_pred HhhcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 341 KATDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 341 ~at~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
...++|...+.||+|+||.||+|+..+ .||||.++..
T Consensus 30 i~~~~~~~~~~lg~G~~g~V~~~~~~~-----~~avk~~~~~ 66 (319)
T 2y4i_B 30 IPFEQLEIGELIGKGRFGQVYHGRWHG-----EVAIRLIDIE 66 (319)
T ss_dssp SCCSCEECCCBCCCSSSSEEEEEEESS-----SEEEEECCCC
T ss_pred CCHHHeEEeeEeccCCceEEEEEEEcC-----eEEEEEeecC
Confidence 334566667899999999999999843 3899998754
No 287
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=94.87 E-value=0.017 Score=51.56 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=29.7
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.+.|...+.||+|+||.||+|+-... +..||||++...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vaiK~~~~~ 63 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLN--KVRVAIKKISPF 63 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEECCT
T ss_pred cccEEEEEEeecCCCeEEEEEEECCC--CeEEEEEEeccc
Confidence 34566678999999999999987433 348999999753
No 288
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=94.87 E-value=0.015 Score=50.94 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=28.5
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+....+....||||+++..
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~ 63 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY 63 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccc
Confidence 345556889999999999998854323224699999754
No 289
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=94.84 E-value=0.016 Score=50.86 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.5
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.+|...+.||+|+||.||+|+.... |..||||++...
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~ 64 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGS--GREYALKRLLSN 64 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTT--CCEEEEEEEEES
T ss_pred ceEEEEEEEccCCceEEEEEEECCC--CcEEEEEEecCC
Confidence 4555668899999999999997432 238999998543
No 290
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=94.83 E-value=0.014 Score=50.77 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=23.5
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++|.....||+|+||.||+|+.... |..||||++....
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~ 62 (318)
T 2dyl_A 25 NDLENLGEMGSGTCGQVWKMRFRKT--GHVIAVKQMRRSG 62 (318)
T ss_dssp GGEEEEEEC------CEEEEEETTT--CCEEEEEEEETTS
T ss_pred ccccccceeeecCCeeEEEEEEecC--CeEEEEEEecccc
Confidence 4455567899999999999998532 2389999997653
No 291
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=94.79 E-value=0.014 Score=53.69 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=29.2
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+-... |..||||.++..
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vaiK~~~~~ 184 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKEKAT--GRYYAMKILKKE 184 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEEHH
T ss_pred HHcEEeEEEeeCcCEEEEEEEEcCC--CCEEEEEEEEhh
Confidence 4566678999999999999987432 348999999753
No 292
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=94.78 E-value=0.011 Score=52.22 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=29.2
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.++|...+.||+|+||.||+|+.. | + .||||.++..
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~-~-~--~vavK~~~~~ 76 (342)
T 1b6c_B 41 ARTIVLQESIGKGRFGEVWRGKWR-G-E--EVAVKIFSSR 76 (342)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEET-T-E--EEEEEEECGG
T ss_pred cccEEEEeeecCCCCcEEEEEEEc-C-c--cEEEEEeCch
Confidence 356777789999999999999984 3 3 8999998653
No 293
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=94.76 E-value=0.019 Score=51.09 Aligned_cols=37 Identities=32% Similarity=0.429 Sum_probs=29.1
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.... |..||||.+...
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~va~K~~~~~ 69 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPS--GLVMARKLIHLE 69 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTT--CCEEEEEEEECC
T ss_pred ccceeeeeecCCCCeEEEEEEECCC--CcEEEEEEeccc
Confidence 3455567899999999999998632 238999998764
No 294
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=94.76 E-value=0.014 Score=52.83 Aligned_cols=35 Identities=31% Similarity=0.541 Sum_probs=27.8
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
|...+.||+|+||.||+|+...+ . .||||++....
T Consensus 42 Y~~~~~lG~G~~g~V~~a~~~~~-~--~~aikk~~~~~ 76 (394)
T 4e7w_A 42 YTNCKVIGNGSFGVVFQAKLVES-D--EVAIKKVLQDK 76 (394)
T ss_dssp EEEEEEEEEETTEEEEEEEETTT-E--EEEEEEEECCT
T ss_pred EEEeEEEeeCCCeEEEEEEECCC-C--eEEEEEEecCc
Confidence 45567899999999999998665 3 59999986543
No 295
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=94.71 E-value=0.014 Score=55.40 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=29.9
Q ss_pred hcCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.++|...+.||+|+||.||+|+.... |..||||++...
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~t--g~~vAvK~l~k~ 220 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRAT--GKMYACKKLEKK 220 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEEHH
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCC--CCEEEEEEEEhH
Confidence 35577778999999999999998532 338999999653
No 296
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=94.70 E-value=0.021 Score=49.24 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=28.0
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.|.....||+|+||.||+|+.... |..||+|.+....
T Consensus 19 ~~y~i~~~lg~G~~g~V~~~~~~~~--~~~~aiK~~~~~~ 56 (302)
T 2j7t_A 19 EVWEIVGELGDGAFGKVYKAKNKET--GALAAAKVIETKS 56 (302)
T ss_dssp GTEEEEEEEECSTTCCEEEEEETTT--CCEEEEEEEC---
T ss_pred cceeecceeccCCCeEEEEEEEcCC--CcEEEEEEecCCC
Confidence 4455567899999999999998642 2389999986543
No 297
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=94.70 E-value=0.025 Score=50.62 Aligned_cols=37 Identities=27% Similarity=0.225 Sum_probs=29.0
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+-... |..||||++...
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~--~~~vavK~~~~~ 61 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAIL--ERNVAIKKLSRP 61 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEEECT
T ss_pred hheeEeeeeEecCCEEEEEEEECCC--CceEEEEEeccc
Confidence 4566678899999999999986432 348999999754
No 298
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=94.69 E-value=0.017 Score=51.03 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=28.3
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
+.|...+.||+|+||.||+|+-... .+..||||.++.
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~-~~~~vavK~~~~ 55 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHAR-GKSQVALKIIRN 55 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTT-TTEEEEEEEECS
T ss_pred ccEEEEEEeeccCCeEEEEEEecCC-CceEEEEEEEcc
Confidence 4555668899999999999987432 124899999865
No 299
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=94.65 E-value=0.019 Score=50.68 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=28.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+. +| . .||||++...
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~-~~-~--~vavK~~~~~ 65 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK-DN-K--FYALKKYEKS 65 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE-TT-E--EEEEEEEEHH
T ss_pred CceEEEEEEcCCCCeEEEEEEc-CC-c--eEEEEEeecc
Confidence 4566678899999999999998 55 3 8999998654
No 300
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=94.65 E-value=0.017 Score=51.83 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=20.8
Q ss_pred CceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 349 ENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 349 ~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
.+.||+|+||.||+|+.... |..||||.++..
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~--g~~vavK~~~~~ 125 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETAT--GLKLAAKIIKTR 125 (373)
T ss_dssp EEECC-----CEEEEEETTT--CCEEEEEEEECC
T ss_pred ceEEecCcCEEEEEEEEcCC--CcEEEEEEEccc
Confidence 46799999999999988542 238999999764
No 301
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=94.62 E-value=0.017 Score=51.58 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=22.5
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.|...+.||+|+||.||+|+-... |..||||++...
T Consensus 25 ~~y~~~~~lG~G~~g~V~~a~~~~~--~~~vaiK~~~~~ 61 (367)
T 1cm8_A 25 AVYRDLQPVGSGAYGAVCSAVDGRT--GAKVAIKKLYRP 61 (367)
T ss_dssp SSEEEEEEC------CEEEEEETTT--CCEEEEEECSST
T ss_pred ceEEEeEEeeecCCeEEEEEEECCC--CCEEEEEEeCcc
Confidence 4455667899999999999987432 338999999653
No 302
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=94.57 E-value=0.017 Score=49.71 Aligned_cols=37 Identities=38% Similarity=0.622 Sum_probs=26.2
Q ss_pred CCcCceeecCCCceEEEEEeCCC-CceeEEEEEEeecC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHD-DHETLVAVKVLNLE 382 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g-~~~~~vavK~l~~~ 382 (388)
|.-.+.||+|+||.||+|+..+. ..+..||||++...
T Consensus 27 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~ 64 (298)
T 3f66_A 27 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI 64 (298)
T ss_dssp EEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTC
T ss_pred hhhcceeeecCCceEEEEEEecCCCceeEEEEEecccC
Confidence 34457899999999999997432 13346899998753
No 303
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=94.55 E-value=0.019 Score=51.37 Aligned_cols=37 Identities=30% Similarity=0.397 Sum_probs=24.7
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.|...+.||+|+||.||+|+-... |..||||++...
T Consensus 29 ~~y~~~~~lG~G~~g~V~~a~~~~~--~~~vaiK~~~~~ 65 (367)
T 2fst_X 29 ERYQNLSPVGSGAYGSVCAAFDTKT--GLRVAVKKLSRP 65 (367)
T ss_dssp TTEEEEEECC----CCEEEEEETTT--TEEEEEEECSST
T ss_pred CceEEeeEEeecCCeEEEEEEECCC--CCEEEEEEeCcc
Confidence 4566667899999999999986432 348999999653
No 304
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=94.55 E-value=0.0089 Score=51.31 Aligned_cols=38 Identities=34% Similarity=0.495 Sum_probs=22.3
Q ss_pred cCCCcCceeecCCCceEEEEEeC--CCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILT--HDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~--~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.. +| .+..||||.++..
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~-~~~~vavK~~~~~ 57 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSG-KTVSVAVKCLKPD 57 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTS-CEEEEEEEC----
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCC-ceeEEEEEEEccC
Confidence 34555678999999999999873 33 4457999998754
No 305
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=94.54 E-value=0.024 Score=50.60 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=28.4
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.|...+.||+|+||.||+|+-... |..||||.+...
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~ 55 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVN--NTHVAMKIVRGD 55 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTT--TEEEEEEEECSC
T ss_pred CeEEEEEeeeecCCeEEEEEEecCC--CcEEEEEEecCC
Confidence 3455668899999999999987432 238999998643
No 306
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=94.53 E-value=0.024 Score=52.48 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=28.7
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.|...+.||+|+||.||+|+-... |..||||++...
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a~~~~~--~~~vAiK~~~~~ 98 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAAYDAVL--DRNVAIKKLSRP 98 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTT--TEEEEEEEEESG
T ss_pred CCeEEEEEeecCCCeEEEEEEECCC--CCEEEEEEECcc
Confidence 4566668899999999999976432 348999999753
No 307
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=94.48 E-value=0.024 Score=53.08 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=27.1
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.|...+.||+|+||.||+|+-..+ +..||||.+....
T Consensus 36 ~~Y~~~~~lG~G~~g~V~~~~~~~~--~~~~aiK~~~~~~ 73 (504)
T 3q5i_A 36 ESYFKVRKLGSGAYGEVLLCKEKNG--HSEKAIKVIKKSQ 73 (504)
T ss_dssp GTEEEEEEEEC--CEEEEEEEETTT--CCEEEEEEEEC--
T ss_pred cceEEEeEecccCCeEEEEEEECCC--CcEEEEEEEEhhh
Confidence 4566668899999999999998654 2389999997643
No 308
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=94.46 E-value=0.023 Score=49.29 Aligned_cols=37 Identities=32% Similarity=0.567 Sum_probs=29.4
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+.... |..||||.+...
T Consensus 34 ~~y~~~~~lg~G~~g~Vy~~~~~~~--~~~vaiK~~~~~ 70 (309)
T 2h34_A 34 GPYRLRRLVGRGGMGDVYEAEDTVR--ERIVALKLMSET 70 (309)
T ss_dssp CCEEEEEEEEECSSSEEEEEEETTT--TEEEEEEECGGG
T ss_pred ccEEEEEEEcCCCCeeEEEEEEcCC--CeEEEEEecCcc
Confidence 4566678899999999999997543 238999998754
No 309
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=94.45 E-value=0.023 Score=49.38 Aligned_cols=38 Identities=37% Similarity=0.641 Sum_probs=25.4
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.|...+.||+|+||.||+|+.... |..||||++....
T Consensus 29 ~~y~~~~~lg~G~~g~Vy~~~~~~~--~~~vaiK~~~~~~ 66 (314)
T 3com_A 29 EVFDVLEKLGEGSYGSVYKAIHKET--GQIVAIKQVPVES 66 (314)
T ss_dssp -CEEEEEECC----CEEEEEEETTT--CCEEEEEEEETTS
T ss_pred hhhhhheeeccCCCeEEEEEEECCC--CCEEEEEecCchH
Confidence 4566678899999999999988542 2389999997643
No 310
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=94.40 E-value=0.02 Score=51.03 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=29.6
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
++|...+.||+|+||.||+|+-... |..||||.+....
T Consensus 29 ~~y~~~~~lG~G~~g~V~~~~~~~~--~~~~avK~~~~~~ 66 (362)
T 2bdw_A 29 DNYDVKEELGKGAFSVVRRCVHKTT--GLEFAAKIINTKK 66 (362)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEETTT
T ss_pred cCeEEeeEEecCCCeEEEEEEECCC--CCEEEEEEEEccc
Confidence 3466668899999999999987532 3389999997643
No 311
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=94.39 E-value=0.016 Score=51.33 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=28.3
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCC------ceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDD------HETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~------~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+..... .+..||||.+...
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~ 86 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD 86 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc
Confidence 45666688999999999999985410 1348999998754
No 312
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=94.27 E-value=0.036 Score=50.12 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=24.6
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
++||+|+||.||+|+-... |..||||+++.
T Consensus 68 ~~LG~G~~g~V~~~~~~~~--~~~vAiK~~~~ 97 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNKRT--QEKFALKMLQD 97 (400)
T ss_dssp EEEEEETTEEEEEEEETTT--CCEEEEEEEEC
T ss_pred ceeeeccCeEEEEEEECCC--CCEEEEEEeCc
Confidence 5799999999999987532 34899999864
No 313
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=94.25 E-value=0.062 Score=30.78 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=14.1
Q ss_pred cceeehhhhHHHHHHHHHHHHHHHHhhccc
Q 042573 287 SLKLIIPVVTVILLVTGMSCFIITSWQSKS 316 (388)
Q Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 316 (388)
...++.++++.++++++++..+++++|||+
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 345566665544444444444444444443
No 314
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=94.20 E-value=0.022 Score=48.73 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=28.8
Q ss_pred CCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
.|...+.||+|+||.||+|+.... |..||||.+....
T Consensus 23 ~y~i~~~lg~G~~g~V~~~~~~~~--~~~valK~~~~~~ 59 (287)
T 2wei_A 23 RYNIVCMLGKGSFGEVLKCKDRIT--QQEYAVKVINKAS 59 (287)
T ss_dssp HEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEEGGG
T ss_pred cceeeEEEcCCCCEEEEEEEEcCC--CcEEEEEEecccc
Confidence 455568899999999999988532 2389999997543
No 315
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=94.20 E-value=0.03 Score=50.40 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=28.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.|...+.||+|+||.||+|+.... |..||+|.+...
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~--~~~~a~K~~~~~ 87 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKAT--GRVFVAKFINTP 87 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEECC
T ss_pred cceEEEEEEecCCCEEEEEEEECCC--CCEEEEEEeccc
Confidence 3456667899999999999988543 238999998754
No 316
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=94.18 E-value=0.03 Score=49.66 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=26.7
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
|...+.||+|+||.||+|+-... |..||||.+..
T Consensus 26 y~~~~~lG~G~~g~V~~~~~~~~--~~~vavK~~~~ 59 (351)
T 3c0i_A 26 YELCEVIGKGPFSVVRRCINRET--GQQFAVKIVDV 59 (351)
T ss_dssp EEEEEEEEECSSEEEEEEEETTT--CCEEEEEEEEH
T ss_pred eEEeeEEeeCCCEEEEEEEECCC--CCEEEEEEEEh
Confidence 45557899999999999987532 23899999864
No 317
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=94.13 E-value=0.026 Score=49.06 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=25.9
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
++|...+.||+|+||.||+++-... |..||||++..
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~ 64 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHD--GHFYALKRILC 64 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTT--CCEEEEEEEEE
T ss_pred eEEEEEEEecCCCCeEEEEEEecCC--CcEEEEEEEec
Confidence 4556668899999999999987332 23899999864
No 318
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=94.12 E-value=0.023 Score=49.97 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=29.0
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.|...+.||+|+||.||+++..+. +..||+|.+...
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~--~~~~a~K~~~~~ 77 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADT--KEVFAGKIVPKS 77 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEEGG
T ss_pred CceEEEEEEeeCCCeEEEEEEECCC--CCEEEEEEechh
Confidence 3455568899999999999998654 238999998754
No 319
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=94.05 E-value=0.024 Score=51.93 Aligned_cols=37 Identities=30% Similarity=0.569 Sum_probs=27.1
Q ss_pred hhcCCCcCceeecCCCceE-EEEEeCCCCceeEEEEEEeecC
Q 042573 342 ATDGFSLENLIGAGSFGSV-YKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 342 at~~f~~~~~lg~g~fg~v-y~g~l~~g~~~~~vavK~l~~~ 382 (388)
+..+|...++||+|+||.| |++.. +| + .||||++...
T Consensus 22 ~~~~y~~~~~LG~G~~G~V~~~~~~-~~-~--~vAvK~~~~~ 59 (432)
T 3p23_A 22 GKISFCPKDVLGHGAEGTIVYRGMF-DN-R--DVAVKRILPE 59 (432)
T ss_dssp TTEEEEEEEEEEECGGGCEEEEEES-SS-S--EEEEEEECTT
T ss_pred ccEEEecCCeeecCcCEEEEEEEEe-CC-e--EEEEEEECHH
Confidence 3455777789999999985 55554 44 2 7999999754
No 320
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=94.03 E-value=0.043 Score=47.25 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=25.0
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.||+|+||.||+|+-... |..||||+++..
T Consensus 24 ~~lg~G~~g~V~~~~~~~~--~~~vaiK~~~~~ 54 (299)
T 3m2w_A 24 QVLGLGINGKVLQIFNKRT--QEKFALKMLQDC 54 (299)
T ss_dssp EEEEEETTEEEEEEEETTT--CCEEEEEEEECS
T ss_pred cccccCCCeEEEEEEEcCC--CcEEEEEEeccc
Confidence 6799999999999987432 238999998643
No 321
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=94.00 E-value=0.028 Score=48.75 Aligned_cols=40 Identities=35% Similarity=0.465 Sum_probs=29.2
Q ss_pred hcCCCcCceeecCCCceEEEEEeCC---CCceeEEEEEEeecC
Q 042573 343 TDGFSLENLIGAGSFGSVYKGILTH---DDHETLVAVKVLNLE 382 (388)
Q Consensus 343 t~~f~~~~~lg~g~fg~vy~g~l~~---g~~~~~vavK~l~~~ 382 (388)
.++|...+.||+|+||.||+|+... ...+..||||.++..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~ 64 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKEN 64 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTT
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCC
Confidence 3445556789999999999998621 113458999999754
No 322
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.87 E-value=0.025 Score=55.19 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=29.0
Q ss_pred cCCCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.|.....||+|+||.||+|+.... +|..||||++...
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~-~~~~vaiK~~~~~ 117 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNV-NGRPVVLKGLVHS 117 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGG-TTEEEEEEESCSS
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCC-CCcEEEEEEeCcc
Confidence 4566668899999999999998531 1238999998653
No 323
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=93.76 E-value=0.034 Score=51.68 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=27.9
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
|...+.||+|+||.||+|+-... |..||||++....
T Consensus 28 y~~~~~lg~G~~g~V~~~~~~~~--~~~~avK~~~~~~ 63 (484)
T 3nyv_A 28 YKGQRVLGKGSFGEVILCKDKIT--GQECAVKVISKRQ 63 (484)
T ss_dssp EEEEEEEEEETTEEEEEEEETTT--CCEEEEEEEETTT
T ss_pred eEEeeEEecCCCEEEEEEEECCC--CCEEEEEEEEhhh
Confidence 44457899999999999988532 2389999997543
No 324
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=93.73 E-value=0.046 Score=47.89 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=31.8
Q ss_pred HHHhhcCCCcCceeecCCCceEEEEEeCCCC---ceeEEEEEEeecC
Q 042573 339 LFKATDGFSLENLIGAGSFGSVYKGILTHDD---HETLVAVKVLNLE 382 (388)
Q Consensus 339 l~~at~~f~~~~~lg~g~fg~vy~g~l~~g~---~~~~vavK~l~~~ 382 (388)
.+...++|...+.||+|+||.||+|+..+.+ .+..||||.+...
T Consensus 41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 87 (333)
T 2i1m_A 41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKST 87 (333)
T ss_dssp GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTT
T ss_pred ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccc
Confidence 3344566777789999999999999874311 1237999999764
No 325
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=93.66 E-value=0.036 Score=49.82 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=29.3
Q ss_pred cCCCcCceeecC--CCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 344 DGFSLENLIGAG--SFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 344 ~~f~~~~~lg~g--~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
+.|...+.||+| +||.||+|+.... |..||||+++...
T Consensus 25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~--~~~vavK~~~~~~ 64 (389)
T 3gni_B 25 GCYELLTVIGKGFEDLMTVNLARYKPT--GEYVTVRRINLEA 64 (389)
T ss_dssp GGEEEEEEEEEETTTTEEEEEEEETTT--CCEEEEEEEEGGG
T ss_pred CcEEEEecccCCcCCceEEEEEEEcCC--CCEEEEEEecccc
Confidence 345556789999 9999999998532 2389999997643
No 326
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=93.54 E-value=0.042 Score=53.19 Aligned_cols=38 Identities=32% Similarity=0.471 Sum_probs=28.3
Q ss_pred CCCcCceeecCCCceEEEEEeCC-CCceeEEEEEEeecC
Q 042573 345 GFSLENLIGAGSFGSVYKGILTH-DDHETLVAVKVLNLE 382 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~~-g~~~~~vavK~l~~~ 382 (388)
.|...+.||+|+||.||+|+... +..+..||||+++..
T Consensus 391 ~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~ 429 (656)
T 2j0j_A 391 RIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC 429 (656)
T ss_dssp GEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSST
T ss_pred cEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc
Confidence 34445679999999999999843 223458999998754
No 327
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=93.52 E-value=0.046 Score=50.96 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=24.3
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeecCC
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNLEH 383 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~~~ 383 (388)
|...+.||+|+||.||+|+-... +..||||.+....
T Consensus 39 y~~~~~lG~G~~g~V~~~~~~~~--~~~~aiK~~~~~~ 74 (494)
T 3lij_A 39 YQRVKKLGSGAYGEVLLCRDKVT--HVERAIKIIRKTS 74 (494)
T ss_dssp EEEEEEEECC---EEEEEEETTT--CCEEEEEEEEC--
T ss_pred eEEeeEEecCCCEEEEEEEECCC--CcEEEEEEEeccc
Confidence 44557899999999999988533 2389999997643
No 328
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=93.30 E-value=0.027 Score=49.78 Aligned_cols=39 Identities=31% Similarity=0.490 Sum_probs=23.5
Q ss_pred cCCCcCceeecCCCceEEEEEeCC-CCceeEEEEEEeecC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTH-DDHETLVAVKVLNLE 382 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~-g~~~~~vavK~l~~~ 382 (388)
++|...+.||+|+||.||+|+... +..+..||||+....
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~ 76 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQE 76 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecC
Confidence 345556789999999999999853 113348999998764
No 329
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=93.05 E-value=0.06 Score=50.08 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=26.7
Q ss_pred CCcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 346 FSLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 346 f~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
|...+.||+|+||.||+|+-... |..||||++..
T Consensus 24 y~~~~~lG~G~~g~V~~~~~~~~--~~~vavK~~~~ 57 (486)
T 3mwu_A 24 YNIVCMLGKGSFGEVLKCKDRIT--QQEYAVKVINK 57 (486)
T ss_dssp EEEEEEEECCSSSEEEEEEETTT--CCEEEEEEEEH
T ss_pred eEEeEEEeecCCEEEEEEEECCC--CCEEEEEEEec
Confidence 44457899999999999987532 23899999864
No 330
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=92.56 E-value=0.14 Score=48.17 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=18.0
Q ss_pred CcCceeecCCCceEEEEEeCCCCceeEEEEEEeec
Q 042573 347 SLENLIGAGSFGSVYKGILTHDDHETLVAVKVLNL 381 (388)
Q Consensus 347 ~~~~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~~ 381 (388)
..+++||+|+||.||+|+..+. .+|+|+...
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~~~----~~~~k~~~~ 369 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYLDF----DVIIKERVK 369 (540)
T ss_dssp ---------CCEEEEEEECSSC----EEEEEEECC
T ss_pred CCCCEEeeCCCEEEEEEEECCC----eEEEEEEec
Confidence 3457899999999999977554 699998754
No 331
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=91.13 E-value=0.28 Score=28.03 Aligned_cols=7 Identities=43% Similarity=0.525 Sum_probs=2.8
Q ss_pred eehhhhH
Q 042573 290 LIIPVVT 296 (388)
Q Consensus 290 ~~~~i~~ 296 (388)
++.++++
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3334444
No 332
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.89 E-value=1.8 Score=30.13 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=22.9
Q ss_pred eeecCcccccCCCCCCEEECcCCccccCCCccccCCCCCCEEEccc
Q 042573 23 LFGNIPSGLTNLVNLELLDLGDNQFTGRIPGSIGDLQKLQRLWLKG 68 (388)
Q Consensus 23 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 68 (388)
++.+-..+|.++.+|+.+.|..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444455555555555555543 2324444555555555555543
No 333
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.28 E-value=4.4 Score=28.09 Aligned_cols=49 Identities=10% Similarity=0.018 Sum_probs=33.0
Q ss_pred CCccccCCCccccCCCCCCEEEcccCcccccCCcCccCCCCCCEEeccCC
Q 042573 44 DNQFTGRIPGSIGDLQKLQRLWLKGNKFWGEIPSSIGNLTSLAILDFAEN 93 (388)
Q Consensus 44 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 93 (388)
+..++.+-...|.+|..|+.+.|..+ ++.+-..+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34455555667778888888877754 44466667777777777777653
No 334
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=78.83 E-value=1.8 Score=23.85 Aligned_cols=7 Identities=0% Similarity=0.073 Sum_probs=2.9
Q ss_pred HHHHhhc
Q 042573 308 IITSWQS 314 (388)
Q Consensus 308 ~~~~~~~ 314 (388)
.+++|||
T Consensus 31 ~~~~~rr 37 (38)
T 2k1k_A 31 LVFRSRR 37 (38)
T ss_dssp HHHHHCC
T ss_pred HHHHeec
Confidence 3344443
No 335
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=78.81 E-value=1.3 Score=38.87 Aligned_cols=27 Identities=30% Similarity=0.634 Sum_probs=21.7
Q ss_pred HhhcCCCcCceeecCCCceEEEEEeCC
Q 042573 341 KATDGFSLENLIGAGSFGSVYKGILTH 367 (388)
Q Consensus 341 ~at~~f~~~~~lg~g~fg~vy~g~l~~ 367 (388)
...++|...+.||+|+||.||+|+...
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~ 40 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKK 40 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETT
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECC
Confidence 345677778899999999999999854
No 336
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=77.59 E-value=1.3 Score=24.86 Aligned_cols=10 Identities=20% Similarity=0.089 Sum_probs=4.3
Q ss_pred eeehhhhHHH
Q 042573 289 KLIIPVVTVI 298 (388)
Q Consensus 289 ~~~~~i~~~~ 298 (388)
.++.++++++
T Consensus 14 ~I~~~vv~Gv 23 (41)
T 2k9y_A 14 AVIGGVAVGV 23 (41)
T ss_dssp HHHHHHHHHH
T ss_pred EEEeehhHHH
Confidence 3444444444
No 337
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=73.25 E-value=2 Score=37.51 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=19.6
Q ss_pred cCCCcCceeecCCCceEEEEEeCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTH 367 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~ 367 (388)
++|...+.||+|+||.||+|+...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~ 40 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRK 40 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETT
T ss_pred cceeEEEEEecCCCcEEEEEEECC
Confidence 445566889999999999999843
No 338
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=70.52 E-value=2.9 Score=35.40 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.2
Q ss_pred cCCCcCceeecCCCceEEEEEeCC
Q 042573 344 DGFSLENLIGAGSFGSVYKGILTH 367 (388)
Q Consensus 344 ~~f~~~~~lg~g~fg~vy~g~l~~ 367 (388)
++|...+.||+|+||.||+|+...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~ 40 (298)
T 1phk_A 17 ENYEPKEILGRGVSSVVRRCIHKP 40 (298)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETT
T ss_pred hccceeeeecCCCceEEEEEEEcC
Confidence 456667899999999999998854
No 339
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=69.02 E-value=3.5 Score=23.55 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=17.2
Q ss_pred ceeehhhhHHHHHHHHHHHHHHHHhhcccCC
Q 042573 288 LKLIIPVVTVILLVTGMSCFIITSWQSKSKR 318 (388)
Q Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 318 (388)
..++.++++++ ++.+.+.+++.+++.++++
T Consensus 14 ~gVVgGv~~v~-ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 14 AGVIGGLFILV-IVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHTTCSSCCC
T ss_pred EeehHHHHHHH-HHHHHHHHHhhhhhhhhcc
Confidence 34444555544 4556666667777666654
No 340
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=60.83 E-value=2 Score=23.13 Aligned_cols=7 Identities=43% Similarity=0.562 Sum_probs=3.0
Q ss_pred eehhhhH
Q 042573 290 LIIPVVT 296 (388)
Q Consensus 290 ~~~~i~~ 296 (388)
++.++++
T Consensus 10 IaagVvg 16 (35)
T 1iij_A 10 IIATVVG 16 (35)
T ss_dssp HHHHHHH
T ss_pred eHHHHHH
Confidence 3444444
No 341
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=59.76 E-value=5.8 Score=36.51 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=18.3
Q ss_pred CCCcCceeecCCCceEEEEEeC
Q 042573 345 GFSLENLIGAGSFGSVYKGILT 366 (388)
Q Consensus 345 ~f~~~~~lg~g~fg~vy~g~l~ 366 (388)
+|.....||+|+||.||+|+-.
T Consensus 17 ~Y~l~~~LG~G~fg~V~~a~~~ 38 (476)
T 2y94_A 17 HYILGDTLGVGTFGKVKVGKHE 38 (476)
T ss_dssp TEEEEEEEECCSSSCEEEEEET
T ss_pred CEEEEEEEeeCCCeEEEEEEEC
Confidence 4455578999999999999875
No 342
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=60.72 E-value=2.4 Score=23.19 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=11.5
Q ss_pred ehhhhHHHHHHHHHHHHHHHHhhcccC
Q 042573 291 IIPVVTVILLVTGMSCFIITSWQSKSK 317 (388)
Q Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~~~ 317 (388)
+.++++.+++++..+++..+.|+++.|
T Consensus 11 l~avlal~vi~iisLIiLi~~w~qKPr 37 (39)
T 2l6w_A 11 ISAILALVVLTIISLIILIMLWQKKPR 37 (39)
Confidence 333333333333333444555665543
No 343
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=49.85 E-value=13 Score=19.59 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=5.1
Q ss_pred HHHHHhhccc
Q 042573 307 FIITSWQSKS 316 (388)
Q Consensus 307 ~~~~~~~~~~ 316 (388)
-.+.+||.++
T Consensus 25 ~tflywrgrr 34 (40)
T 2l9u_A 25 GTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHH
T ss_pred ceeEEEcccc
Confidence 3445566543
No 344
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=31.77 E-value=4.8 Score=36.88 Aligned_cols=24 Identities=4% Similarity=0.015 Sum_probs=7.9
Q ss_pred CceEEEEEeCCCCceeEEEE------EEeecC
Q 042573 357 FGSVYKGILTHDDHETLVAV------KVLNLE 382 (388)
Q Consensus 357 fg~vy~g~l~~g~~~~~vav------K~l~~~ 382 (388)
||+||+|.+... ..+||| |+++.+
T Consensus 152 fG~v~~g~~~~~--~~~Vav~~~~~~K~~~~~ 181 (463)
T 3cxl_A 152 YTTLNREPAYKK--HMPVLKETHDERDSTGQD 181 (463)
T ss_dssp BCCC-----------CCBGGGC----------
T ss_pred chhhhccccccc--CCchhhhhccCccccccc
Confidence 999999999653 237999 877653
No 345
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=28.41 E-value=84 Score=18.74 Aligned_cols=11 Identities=0% Similarity=0.205 Sum_probs=4.7
Q ss_pred ceeehhhhHHH
Q 042573 288 LKLIIPVVTVI 298 (388)
Q Consensus 288 ~~~~~~i~~~~ 298 (388)
+.+++++++++
T Consensus 10 WiIi~svl~GL 20 (54)
T 2l8s_A 10 WVILLSAFAGL 20 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 346
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=26.39 E-value=47 Score=29.26 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=20.9
Q ss_pred ceeecCCCceEEEEEeCCCCceeEEEEEEee
Q 042573 350 NLIGAGSFGSVYKGILTHDDHETLVAVKVLN 380 (388)
Q Consensus 350 ~~lg~g~fg~vy~g~l~~g~~~~~vavK~l~ 380 (388)
+.+|.|.++.||+++...++. .++||...
T Consensus 36 ~~lg~G~~n~vyrv~~~~~~~--~~vvK~~~ 64 (397)
T 2olc_A 36 QEIGDGNLNYVFHIYDQEHDR--ALIIKQAV 64 (397)
T ss_dssp EECCSSSSEEEEEEEC----C--EEEEEEEC
T ss_pred EECCCCceEEEEEEEECCCCc--EEEEEecc
Confidence 568999999999997743212 69999764
No 347
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=21.49 E-value=41 Score=27.18 Aligned_cols=27 Identities=15% Similarity=-0.092 Sum_probs=19.8
Q ss_pred ecCCCceEEEEEeCCCCceeEEEEEEeecC
Q 042573 353 GAGSFGSVYKGILTHDDHETLVAVKVLNLE 382 (388)
Q Consensus 353 g~g~fg~vy~g~l~~g~~~~~vavK~l~~~ 382 (388)
+.|..+.||+....+| . .++||.-...
T Consensus 29 ~gg~~~~v~~~~~~~g-~--~~vlK~~~~~ 55 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGR-P--VLFVKTDLSG 55 (264)
T ss_dssp CTTSSCEEEEEECTTS-C--CEEEEEECSC
T ss_pred cCCCCceEEEEecCCC-C--eEEEEeCCcc
Confidence 3455699999988666 3 6999987654
Done!