BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042574
(929 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 147/322 (45%), Gaps = 46/322 (14%)
Query: 165 IGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQPLD---LIKLQT-----EIA 215
+ + GM G GK+ + E + + E V WV+V + L+KLQ +
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 209
Query: 216 TALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLV 275
+ Q LP N ++ + R+ ML+ + +LILDD+W+++ L+ ++ C+++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRIL-MLRKHPRSLLILDDVWDSWVLKAF-------DSQCQIL 261
Query: 276 ITTRSLGVSRSMDCKEIGVEL---LSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEEC 332
+TTR V+ S+ + V + L +E+ L + V + + +P E +S+++EC
Sbjct: 262 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLP----EQAHSIIKEC 317
Query: 333 DGLPLAIVTVASCMRGVDEIHEWRNALNELRG----LVRSRNGVNADVLGR-LEFSYHRL 387
G PL + + + +R D + W L +L+ +R + + + L + S L
Sbjct: 318 KGSPLVVSLIGALLR--DFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375
Query: 388 KDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCC 447
++D ++ + ++ +D +P + L W E EEV+D IL VN
Sbjct: 376 RED-IKDYYTDLSILQKDVKVPTKVLCILWDME--TEEVED----------ILQEFVNKS 422
Query: 448 LLERAEDGGCVK--MHDLIRDM 467
LL +G + +HDL D
Sbjct: 423 LLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 150/332 (45%), Gaps = 47/332 (14%)
Query: 165 IGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQPLD---LIKLQT-----EIA 215
+ ++GM G GK+ + E + + E V WV++ + L+KLQ +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 216 TALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLV 275
+ Q LP N ++ + R+ ML+ + +LILDD+W+ + L+ +N C+++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRVL-MLRKHPRSLLILDDVWDPWVLKAF-------DNQCQIL 261
Query: 276 ITTRSLGVSRSMDCKEIGVEL---LSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEEC 332
+TTR V+ S+ + V + L +E+ L + V + +P +S+++EC
Sbjct: 262 LTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLP----AEAHSIIKEC 317
Query: 333 DGLPLAIVTVASCMRGVDEIHEWRNALNELRG----LVRSRNGVNADVLGR-LEFSYHRL 387
G PL + + + +R D + W L +L+ +R + + + L + S L
Sbjct: 318 KGSPLVVSLIGALLR--DFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375
Query: 388 KDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCC 447
++D ++ + ++ +D +P + L W E EEV+D IL VN
Sbjct: 376 RED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE--TEEVED----------ILQEFVNKS 422
Query: 448 LL--ERAEDGGCVKMHDLIRDMALRIKSKSPL 477
LL R C +HDL D L K++S L
Sbjct: 423 LLFCNRNGKSFCYYLHDLQVDF-LTEKNRSQL 453
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 147/322 (45%), Gaps = 46/322 (14%)
Query: 165 IGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQPLD---LIKLQT-----EIA 215
+ + GM G GK+ + E + + E V WV+V + L+KLQ +
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 215
Query: 216 TALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLV 275
+ Q LP N ++ + R+ ML+ + +LILDD+W+++ L+ ++ C+++
Sbjct: 216 ESFSQRLPLNIEEAKDRLRIL-MLRKHPRSLLILDDVWDSWVLKAF-------DSQCQIL 267
Query: 276 ITTRSLGVSRSMDCKEIGVEL---LSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEEC 332
+TTR V+ S+ + V + L +E+ L + V + + +P E +S+++EC
Sbjct: 268 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLP----EQAHSIIKEC 323
Query: 333 DGLPLAIVTVASCMRGVDEIHEWRNALNELRG----LVRSRNGVNADVLGR-LEFSYHRL 387
G PL + + + +R D + W L +L+ +R + + + L + S L
Sbjct: 324 KGSPLVVSLIGALLR--DFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 381
Query: 388 KDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCC 447
++D ++ + ++ +D +P + L W E EEV+D IL VN
Sbjct: 382 RED-IKDYYTDLSILQKDVKVPTKVLCILWDME--TEEVED----------ILQEFVNKS 428
Query: 448 LLERAEDGGCVK--MHDLIRDM 467
LL +G + +HDL D
Sbjct: 429 LLFCDRNGKSFRYYLHDLQVDF 450
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 149/332 (44%), Gaps = 47/332 (14%)
Query: 165 IGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQPLD---LIKLQT-----EIA 215
+ ++GM G GK+ + E + + E V WV++ + L+KLQ +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 216
Query: 216 TALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLV 275
+ Q LP N ++ + R+ ML+ + +LILDD+W+ + L+ +N C+++
Sbjct: 217 ESFSQRLPLNIEEAKDRLRVL-MLRKHPRSLLILDDVWDPWVLKAF-------DNQCQIL 268
Query: 276 ITTRSLGVSRSMDCKEIGVEL---LSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEEC 332
+TT V+ S+ + V + L +E+ L + V + +P +S+++EC
Sbjct: 269 LTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLP----AEAHSIIKEC 324
Query: 333 DGLPLAIVTVASCMRGVDEIHEWRNALNELRG----LVRSRNGVNADVLGR-LEFSYHRL 387
G PL + + + +R D + W L +L+ +R + + + L + S L
Sbjct: 325 KGSPLVVSLIGALLR--DFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 382
Query: 388 KDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCC 447
++D ++ + ++ +D +P + L W E EEV+D IL VN
Sbjct: 383 RED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE--TEEVED----------ILQEFVNKS 429
Query: 448 LL--ERAEDGGCVKMHDLIRDMALRIKSKSPL 477
LL R C +HDL D L K++S L
Sbjct: 430 LLFCNRNGKSFCYYLHDLQVDF-LTEKNRSQL 460
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 24/145 (16%)
Query: 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTN 557
NL + L N ++ +P+ + L L+L N LQ +P+ F + L LNL+H
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 558 IEVLPXXXXXXXXXXXXXXXXXXXXXXVPSVAKLLALQYLDLERTWIEEVPEGM-EMLEN 616
++ LP KL L LDL ++ +PEG+ + L
Sbjct: 145 LQSLPKGV----------------------FDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 617 LSHLYLSSPPLKKFPTGILPRLRNL 641
L L L LK P G+ RL +L
Sbjct: 183 LKDLRLYQNQLKSVPDGVFDRLTSL 207
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 23/123 (18%)
Query: 525 TLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPXXXXXXXXXXXXXXXXXXXXXX 584
T L+ LQ +P F + LK L L ++ LP
Sbjct: 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV------------------- 128
Query: 585 VPSVAKLLALQYLDLERTWIEEVPEGM-EMLENLSHLYLSSPPLKKFPTGILPRLRNLYK 643
KL L YL+L ++ +P+G+ + L NL+ L LS L+ P G+ +L L
Sbjct: 129 ---FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 644 LKL 646
L+L
Sbjct: 186 LRL 188
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 590 KLLALQYLDLERTWIEEVPEGM-EMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSF 648
KL L+ L L ++ +P+G+ + L NL++L L+ L+ P G+ +L NL +L LS+
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 649 GN-EALRETVEEAARLSDGLDSFEGHFSELKDFNIY 683
++L E V + ++LKD +Y
Sbjct: 167 NQLQSLPEGVFD-------------KLTQLKDLRLY 189
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 585 VPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKL 644
V + L ++YL L + ++ ++ L NL++L L+ L+ P G+ +L NL +L
Sbjct: 56 VQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 645 KL 646
L
Sbjct: 115 VL 116
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 6/164 (3%)
Query: 500 ERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE 559
+++ L N + +PS L L L N LQ +P F ++ L+ L ++ ++
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 560 VLPXXXXXXXXXXXXXXXXXXXXXXVPS--VAKLLALQYLDLERTWIEEVPEGM-EMLEN 616
LP +P L L YL L ++ +P+G+ + L +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 617 LSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEA 660
L L L + LK+ P G +L L LKL N L+ E A
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLD--NNQLKRVPEGA 200
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHT 556
+NLE + + DN ++ +P + L+ L L RN L+ +P F + L L+L +
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 557 NIEVLPXXXXXXXXXXXXXXXXXXXXXXVPSVA--KLLALQYLDLERTWIEEVPEG-MEM 613
++ LP VP A KL L+ L L+ ++ VPEG +
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Query: 614 LENLSHLYLSSPPLKKFPTGIL 635
LE L L L P GI+
Sbjct: 204 LEKLKMLQLQENPWDCTCNGII 225
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTN 557
N + + L DN I ++ + L L L N L +P F + L VL+L
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 558 IEVLPXXXXXXXXXXXXXXXXXXXXXXVPSVAKLLALQYLDLERTWIEEVPEGMEMLENL 617
+ VLP +L+ L+ L + + E+P G+E L +L
Sbjct: 100 LTVLPSAV----------------------FDRLVHLKELFMCCNKLTELPRGIERLTHL 137
Query: 618 SHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650
+HL L LK P G RL +L L FGN
Sbjct: 138 THLALDQNQLKSIPHGAFDRLSSLTHAYL-FGN 169
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 596 YLDLERTWIEEVPEGM-EMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN---- 650
YLDLE ++ +P G+ + L +L+ LYL L+ P G+ +L +L L LS
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 651 --------EALRETVEEAARLSDGLDSFEGHFSELKDFNIY 683
L+E +L D ++LKD +Y
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
Score = 36.6 bits (83), Expect = 0.073, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 590 KLLALQYLDLERTWIEEVPEGM-EMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKL 646
KL +L YL+L ++ +P G+ + L L L L++ L+ P G+ +L L L+L
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 590 KLLALQYLDLERTWIEEVPEGM-EMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKL 646
KL L+ L L ++ +P+G+ + L NL++LYL L+ P G+ +L NL +L L
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 23/124 (18%)
Query: 525 TLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPXXXXXXXXXXXXXXXXXXXXXX 584
T L+ LQ +P F + LK L L ++ LP
Sbjct: 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV------------------- 128
Query: 585 VPSVAKLLALQYLDLERTWIEEVPEGM-EMLENLSHLYLSSPPLKKFPTGILPRLRNLYK 643
KL L YL L ++ +P+G+ + L NL+ L L + L+ P G+ +L L +
Sbjct: 129 ---FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQ 185
Query: 644 LKLS 647
L L+
Sbjct: 186 LSLN 189
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 585 VPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKL 644
V + L ++YL L + ++ ++ L NL++L L+ L+ P G+ +L NL +L
Sbjct: 56 VQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 645 KL 646
L
Sbjct: 115 VL 116
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 490 PGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFF 542
PG LE++SL +N++ E+P+ + + L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 591 LLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649
L AL LD+ + +P G + L L LYL LK P G+L L KL L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 650 NEALRETVEEAARLSDGLDSFE 671
N E A L +GL++ +
Sbjct: 159 N-----LTELPAGLLNGLENLD 175
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 490 PGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFF 542
PG LE++SL +N++ E+P+ + + L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 591 LLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649
L AL LD+ + +P G + L L LYL LK P G+L L KL L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 650 NEALRETVEEAARLSDGLDSFE 671
N E A L +GL++ +
Sbjct: 159 N-----LTELPAGLLNGLENLD 175
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 490 PGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFF 542
PG LE++SL +N++ E+P+ + + L TLLLQ N L IP+ FF
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 193
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 591 LLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649
L AL LD+ + +P G + L L LYL LK P G+L L KL L+
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 650 NEALRETVEEAARLSDGLDSFE 671
N E A L +GL++ +
Sbjct: 160 N-----LTELPAGLLNGLENLD 176
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 490 PGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFF 542
PG LE++SL +N++ E+P+ + + L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 591 LLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649
L AL LD+ + +P G + L L LYL LK P G+L L KL L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 650 NEALRETVEEAARLSDGLDSFE 671
N E A L +GL++ +
Sbjct: 159 N-----LTELPAGLLNGLENLD 175
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 490 PGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFF 542
PG LE++SL +N++ E+P+ + + L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 591 LLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649
L AL LD+ + +P G + L L LYL LK P G+L L KL L+
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 650 NEALRETVEEAARLSDGLDSFE 671
N E A L +GL++ +
Sbjct: 159 N-----LTELPAGLLNGLENLD 175
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 490 PGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFF 542
PG LE++SL +N + E+P+ + + L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 591 LLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGIL---PRLRNLYKLKL 646
L AL LD+ + +P G + L L LYL LK P G+L P+L KL
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE-----KL 153
Query: 647 SFGNEALRETVEEAARLSDGLDSFE 671
S N L E A L +GL++ +
Sbjct: 154 SLANNQLTEL---PAGLLNGLENLD 175
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 490 PGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFF 542
PG LE++SL +N + E+P+ + + L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 591 LLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGIL---PRLRNLYKLKL 646
L AL LD+ + +P G + L L LYL LK P G+L P+L KL
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE-----KL 153
Query: 647 SFGNEALRETVEEAARLSDGLDSFE 671
S N L E A L +GL++ +
Sbjct: 154 SLANNQLTEL---PAGLLNGLENLD 175
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 490 PGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFF 542
PG LE++SL +N + E+P+ + + L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 591 LLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGIL---PRLRNLYKLKL 646
L AL LD+ + +P G + L L LYL LK P G+L P+L KL
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE-----KL 153
Query: 647 SFGNEALRETVEEAARLSDGLDSFE 671
S N L E A L +GL++ +
Sbjct: 154 SLANNQLTEL---PAGLLNGLENLD 175
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 490 PGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFF 542
PG LE++SL +N + E+P+ + + L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 591 LLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGIL---PRLRNLYKLKL 646
L AL LD+ + +P G + L L LYL LK P G+L P+L KL
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE-----KL 153
Query: 647 SFGNEALRETVEEAARLSDGLDSFE 671
S N L E A L +GL++ +
Sbjct: 154 SLANNQLTEL---PAGLLNGLENLD 175
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 490 PGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFF 542
PG LE++SL +N + E+P+ + + L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 591 LLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGIL---PRLRNLYKLKL 646
L AL LD+ + +P G + L L LYL LK P G+L P+L KL
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE-----KL 153
Query: 647 SFGNEALRETVEEAARLSDGLDSFE 671
S N L E A L +GL++ +
Sbjct: 154 SLANNDLTEL---PAGLLNGLENLD 175
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 590 KLLALQYLDLERTWIEEVPEGM-EMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKL 646
KL L L L + I+ +P+G+ + L L+ LYL L+ P G+ +L L +L L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 594 LQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKL 646
++ LDL I+ +P+ + LE L L ++S LK P GI RL +L K+ L
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 147 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 182
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 158 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 193
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 158 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 193
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 152 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 187
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 185 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 220
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 147 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 182
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 591 LLALQYLDLERTWIEEVPEGM-EMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLS 647
L L L L + +P G+ + L L LYL LK P+G+ RL L +L+L+
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 591 LLALQYLDLERTWIEEVPEGM-EMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLS 647
L L L L + +P G+ + L L LYL LK P+G+ RL L +L+L+
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 148 KVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVV---IWVTVSQP 204
++ E + L G+K + ++G+ G GKT + + + RL+ + V+ I+V
Sbjct: 30 RLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89
Query: 205 LDLIKLQTEIATALKQSLPENEDKV-----RRAGRLSEMLKAKAKFVLILDDM 252
++ + IA A+ +P V R RLS + + ++++LD++
Sbjct: 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRL---RGIYIIVLDEI 139
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT +++E+ N + +E +V V
Sbjct: 143 KGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGV 181
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 598 DLERTWIEE------VPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLS 647
D +R W+ P + L NL LY +S L PTG+ +L L +L L+
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 198 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 236
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 150 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 188
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 591 LLALQYLDLERTWIEEVPEGM-EMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649
L L YL+L + +P G+ + L L+HL L LK P G+ L++L + L F
Sbjct: 63 LTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYL-FN 121
Query: 650 N 650
N
Sbjct: 122 N 122
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 140 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 178
>pdb|2AWZ|A Chain A, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5h)
pdb|2AWZ|B Chain B, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5h)
pdb|2AX0|A Chain A, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5x)
pdb|2AX0|B Chain B, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5x)
pdb|2AX1|A Chain A, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5ee)
pdb|2AX1|B Chain B, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5ee)
Length = 580
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 336 PLAIVTVASCMR--GVDEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSY 384
P I VASC+R GV + WR+ +R + SR G A + G+ F++
Sbjct: 479 PGEINRVASCLRKLGVPPLRAWRHRARNVRARLLSRGG-RAAICGKYLFNW 528
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 57/153 (37%), Gaps = 5/153 (3%)
Query: 499 LERVSLMDN-HIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTN 557
LE++ L DN + + L TL L R G LQ + F + L+ L L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA 140
Query: 558 IEVLPXXXXXXXXXXXXXXXXXXXXXXVPSVA--KLLALQYLDLERTWIEEV-PEGMEML 614
++ LP VP A L +L L L + + V P L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 615 ENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLS 647
L LYL + L PT L LR L L+L+
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 57/153 (37%), Gaps = 5/153 (3%)
Query: 499 LERVSLMDN-HIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTN 557
LE++ L DN + + L TL L R G LQ + F + L+ L L
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA 139
Query: 558 IEVLPXXXXXXXXXXXXXXXXXXXXXXVPSVA--KLLALQYLDLERTWIEEV-PEGMEML 614
++ LP VP A L +L L L + + V P L
Sbjct: 140 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Query: 615 ENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLS 647
L LYL + L PT L LR L L+L+
Sbjct: 200 GRLMTLYLFANNLSALPTEALAPLRALQYLRLN 232
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 594 LQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNL 641
++ LDL I +P+ + L+ L L ++S LK P G+ RL +L
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 25/83 (30%)
Query: 497 ENLERVSLMDNHIE-EIPSNMSPHCKILSTLLLQRNGYLQRIPECF-------------- 541
++L+ +SL +N EIP +S C L+ L L N + +P F
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 542 ----------FMHMRGLKVLNLS 554
+ MRGLKVL+LS
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLS 351
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 594 LQYLDLERTWIEEVPEGM-EMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLS 647
L +L+L R IEE+P + + LENL + S L++ P GI ++ L +L L+
Sbjct: 149 LSHLEL-RANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLA 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,620,850
Number of Sequences: 62578
Number of extensions: 1025860
Number of successful extensions: 3259
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3166
Number of HSP's gapped (non-prelim): 105
length of query: 929
length of database: 14,973,337
effective HSP length: 108
effective length of query: 821
effective length of database: 8,214,913
effective search space: 6744443573
effective search space used: 6744443573
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)